Query 048289
Match_columns 920
No_of_seqs 804 out of 5986
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-89 1.3E-93 832.2 41.8 702 1-845 16-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.3E-69 1.8E-73 654.8 40.3 633 78-815 50-699 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-57 1.2E-61 546.5 51.9 604 56-814 8-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-55 1.6E-59 527.9 47.5 593 81-834 7-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4E-51 1.4E-55 486.8 46.0 536 159-813 16-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.2E-50 4E-55 482.8 44.2 540 129-789 14-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-51 2.2E-55 500.9 38.1 564 159-845 8-592 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-50 4.5E-55 482.3 37.5 536 157-814 13-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-50 1.1E-54 494.5 36.6 533 57-789 9-564 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-49 1.3E-53 469.6 40.7 536 56-681 15-569 (606)
11 4eco_A Uncharacterized protein 100.0 6.1E-51 2.1E-55 484.3 15.3 502 1-573 34-601 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 3.2E-47 1.1E-51 458.3 27.9 495 1-596 273-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-45 3.6E-50 437.0 35.7 513 158-815 10-537 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-44 4.2E-49 425.6 34.3 468 229-814 28-515 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 4.9E-44 1.7E-48 422.7 39.3 494 78-677 28-538 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-43 5.3E-48 416.2 37.0 492 39-600 3-514 (549)
17 4eco_A Uncharacterized protein 100.0 4.7E-44 1.6E-48 425.1 20.4 444 227-809 81-600 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-41 5.9E-46 406.7 40.6 526 159-811 35-582 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-43 3.3E-47 406.3 25.2 452 255-813 4-485 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 2E-42 6.7E-47 403.7 27.5 456 206-789 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 3.1E-42 1.1E-46 415.0 27.6 225 227-465 323-615 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-40 1.1E-44 395.5 44.0 562 28-681 11-591 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-40 1.1E-44 388.1 22.8 226 513-814 277-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-39 1.3E-43 378.9 27.8 464 178-678 30-518 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.2E-37 4E-42 353.6 28.3 300 274-620 10-310 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 2E-38 6.8E-43 359.9 18.9 393 297-816 9-418 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1E-35 3.5E-40 340.9 30.3 382 231-674 14-412 (455)
28 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-36 7.6E-41 343.4 23.2 362 246-681 37-398 (457)
29 3v47_A TOLL-like receptor 5B a 100.0 1.1E-34 3.7E-39 332.4 34.5 137 512-648 275-412 (455)
30 1ogq_A PGIP-2, polygalacturona 100.0 5.3E-37 1.8E-41 331.6 14.4 284 1-334 10-302 (313)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-35 1.3E-39 333.2 26.7 361 336-815 31-393 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 2.4E-34 8.3E-39 331.3 22.4 346 425-837 15-361 (477)
33 1o6v_A Internalin A; bacterial 100.0 2.4E-32 8.3E-37 313.0 35.2 346 52-437 46-391 (466)
34 1o6v_A Internalin A; bacterial 100.0 5.5E-32 1.9E-36 310.1 34.8 349 75-486 43-391 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-34 2.5E-38 307.0 17.1 258 513-841 51-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 1.5E-31 5E-36 308.1 30.2 323 57-390 16-339 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 4.9E-31 1.7E-35 295.1 27.7 348 30-409 3-352 (390)
38 4fmz_A Internalin; leucine ric 100.0 9.3E-30 3.2E-34 280.1 32.2 306 74-408 40-345 (347)
39 3oja_B Anopheles plasmodium-re 100.0 2.6E-30 8.9E-35 305.3 29.3 347 28-409 7-358 (597)
40 4fmz_A Internalin; leucine ric 100.0 1.7E-29 5.7E-34 278.1 30.4 304 51-384 43-346 (347)
41 3o6n_A APL1; leucine-rich repe 100.0 5.4E-30 1.8E-34 286.7 26.1 134 537-679 227-361 (390)
42 3oja_B Anopheles plasmodium-re 100.0 1.3E-29 4.3E-34 299.4 26.3 134 537-679 233-367 (597)
43 4fcg_A Uncharacterized protein 100.0 2.5E-30 8.6E-35 280.9 12.1 260 1-309 31-311 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.8E-32 2.3E-36 309.7 -1.9 388 323-809 3-440 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-28 5.6E-33 268.1 23.7 284 472-807 35-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.5E-27 5.1E-32 260.3 29.8 293 54-381 33-329 (330)
47 1xku_A Decorin; proteoglycan, 100.0 3.1E-27 1E-31 257.8 30.1 289 78-406 31-329 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-27 4.1E-32 261.2 26.1 293 54-382 35-331 (332)
49 1z7x_W Ribonuclease inhibitor; 100.0 9.3E-31 3.2E-35 300.3 -0.7 359 78-458 3-412 (461)
50 3ogk_B Coronatine-insensitive 99.9 8.8E-30 3E-34 302.0 0.7 410 73-487 68-530 (592)
51 2z80_A TOLL-like receptor 2, v 99.9 7.7E-28 2.6E-32 265.1 15.8 275 493-813 33-318 (353)
52 2z66_A Variable lymphocyte rec 99.9 1.5E-26 5.3E-31 249.4 20.7 249 494-812 10-264 (306)
53 3ogk_B Coronatine-insensitive 99.9 1.5E-28 5.3E-33 291.3 4.5 460 52-518 73-589 (592)
54 3zyi_A Leucine-rich repeat-con 99.9 4.5E-26 1.6E-30 259.8 23.6 247 493-810 56-304 (452)
55 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-26 1.1E-30 244.2 20.4 255 494-794 14-270 (285)
56 2z80_A TOLL-like receptor 2, v 99.9 3.3E-26 1.1E-30 252.1 20.0 289 31-388 21-318 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 9E-26 3.1E-30 256.4 22.9 246 493-809 45-292 (440)
58 1wwl_A Monocyte differentiatio 99.9 5.8E-28 2E-32 260.9 3.9 203 561-811 97-311 (312)
59 4fcg_A Uncharacterized protein 99.9 2.7E-26 9.2E-31 249.1 16.6 223 537-809 82-314 (328)
60 2z66_A Variable lymphocyte rec 99.9 9.9E-26 3.4E-30 243.1 19.7 276 474-795 11-297 (306)
61 1wwl_A Monocyte differentiatio 99.9 4.6E-27 1.6E-31 253.8 4.0 246 491-787 43-311 (312)
62 3g06_A SSPH2 (leucine-rich rep 99.9 9.1E-25 3.1E-29 254.9 22.4 285 27-386 9-299 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-24 9.8E-29 250.7 25.6 175 444-644 40-214 (622)
64 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-24 6.4E-29 230.4 21.4 264 473-782 14-284 (285)
65 3zyi_A Leucine-rich repeat-con 99.9 6.5E-24 2.2E-28 242.0 25.5 229 103-360 75-303 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.9 8E-27 2.7E-31 252.5 1.0 245 512-814 34-281 (317)
67 3zyj_A Leucine-rich repeat-con 99.9 3E-23 1E-27 235.6 26.6 246 56-360 47-292 (440)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-25 1.2E-29 239.5 9.4 244 513-814 11-256 (317)
69 3oja_A Leucine-rich immune mol 99.9 2.1E-25 7.1E-30 255.5 7.5 234 513-804 35-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 3.5E-23 1.2E-27 219.4 20.8 226 541-814 12-242 (276)
71 3oja_A Leucine-rich immune mol 99.9 3.3E-24 1.1E-28 245.5 13.1 222 535-814 33-256 (487)
72 2p1m_B Transport inhibitor res 99.9 6.3E-26 2.1E-30 269.0 -2.5 109 532-641 428-541 (594)
73 2p1m_B Transport inhibitor res 99.9 2.7E-26 9.1E-31 272.2 -6.2 400 76-480 103-541 (594)
74 2o6q_A Variable lymphocyte rec 99.9 4E-22 1.4E-26 210.3 23.8 217 37-312 2-218 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 1.2E-22 4.1E-27 215.3 19.6 227 496-789 12-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 206.4 21.3 206 537-813 17-222 (270)
77 4glp_A Monocyte differentiatio 99.9 5.3E-23 1.8E-27 221.8 10.9 205 561-810 93-308 (310)
78 3rfs_A Internalin B, repeat mo 99.9 3.5E-22 1.2E-26 210.9 13.3 203 533-815 38-241 (272)
79 3goz_A Leucine-rich repeat-con 99.9 3.8E-23 1.3E-27 228.1 5.2 87 725-811 197-299 (362)
80 3rfs_A Internalin B, repeat mo 99.9 3.6E-22 1.2E-26 210.8 12.1 219 445-676 20-241 (272)
81 3goz_A Leucine-rich repeat-con 99.9 6.5E-23 2.2E-27 226.3 5.8 260 496-793 3-305 (362)
82 2ca6_A RAN GTPase-activating p 99.9 5.2E-23 1.8E-27 229.5 0.8 196 580-813 91-320 (386)
83 2ast_B S-phase kinase-associat 99.8 3.2E-22 1.1E-26 218.8 6.4 250 513-814 48-311 (336)
84 3m19_A Variable lymphocyte rec 99.8 7.4E-21 2.5E-25 198.2 15.2 211 561-844 16-232 (251)
85 2ca6_A RAN GTPase-activating p 99.8 2.8E-22 9.7E-27 223.5 2.9 155 251-405 159-339 (386)
86 4glp_A Monocyte differentiatio 99.8 8.1E-21 2.8E-25 204.7 13.9 206 536-786 91-308 (310)
87 3m19_A Variable lymphocyte rec 99.8 1E-19 3.6E-24 189.5 20.4 180 492-673 15-195 (251)
88 1p9a_G Platelet glycoprotein I 99.8 1.3E-19 4.5E-24 192.6 21.1 175 180-358 32-206 (290)
89 1p9a_G Platelet glycoprotein I 99.8 2.2E-19 7.4E-24 190.9 22.7 207 175-389 6-213 (290)
90 2xwt_C Thyrotropin receptor; s 99.8 1.9E-20 6.5E-25 193.6 13.6 196 560-806 32-236 (239)
91 2ast_B S-phase kinase-associat 99.8 9.2E-21 3.1E-25 207.2 10.7 255 155-465 47-314 (336)
92 2xwt_C Thyrotropin receptor; s 99.8 2.7E-20 9.1E-25 192.5 12.6 200 510-783 29-237 (239)
93 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4.2E-24 194.8 17.8 189 561-810 43-231 (308)
94 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.6E-24 198.6 15.4 241 494-807 12-257 (350)
95 1h6u_A Internalin H; cell adhe 99.8 7.7E-19 2.6E-23 188.6 17.2 195 74-313 37-231 (308)
96 3cvr_A Invasion plasmid antige 99.8 3.4E-19 1.2E-23 205.2 14.6 190 536-797 59-255 (571)
97 2o6s_A Variable lymphocyte rec 99.8 6.4E-19 2.2E-23 177.8 13.5 174 494-676 10-184 (208)
98 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.6E-23 175.4 14.6 196 539-792 10-205 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.1E-18 7.1E-23 189.1 14.4 231 539-818 12-245 (350)
100 3cvr_A Invasion plasmid antige 99.8 2.5E-18 8.6E-23 198.0 15.4 210 29-297 32-252 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8E-22 167.5 15.4 160 495-679 15-175 (220)
102 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4E-22 177.7 13.0 186 564-810 29-214 (291)
103 2v9t_B SLIT homolog 2 protein 99.7 3.7E-17 1.3E-21 166.0 15.7 160 494-678 14-173 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 8.9E-17 3E-21 163.2 15.8 144 539-687 14-158 (220)
105 1m9s_A Internalin B; cell inva 99.7 2.6E-17 9E-22 191.8 13.3 191 537-788 22-213 (605)
106 2v9t_B SLIT homolog 2 protein 99.7 1.1E-16 3.8E-21 162.4 15.6 143 539-686 14-156 (220)
107 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 162.2 16.3 156 493-674 21-176 (229)
108 2xot_A Amphoterin-induced prot 99.7 2.9E-17 1E-21 180.7 11.0 179 494-674 21-206 (361)
109 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.1E-21 186.3 14.7 196 513-769 22-218 (605)
110 3e6j_A Variable lymphocyte rec 99.7 7.5E-16 2.6E-20 157.5 16.9 144 538-687 21-164 (229)
111 2xot_A Amphoterin-induced prot 99.7 2.1E-16 7.1E-21 173.9 13.7 172 474-645 22-203 (361)
112 1h6t_A Internalin B; cell adhe 99.7 8.9E-16 3E-20 163.1 17.2 149 176-336 65-213 (291)
113 4b8c_D Glucose-repressible alc 99.7 2.8E-17 9.5E-22 196.8 6.0 191 567-813 209-408 (727)
114 1w8a_A SLIT protein; signaling 99.7 6.5E-17 2.2E-21 160.4 7.6 113 723-836 53-166 (192)
115 1xeu_A Internalin C; cellular 99.7 9E-17 3.1E-21 168.0 8.8 167 561-811 21-187 (263)
116 1dce_A Protein (RAB geranylger 99.7 2.1E-18 7.2E-23 199.9 -4.6 185 582-815 348-552 (567)
117 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.9E-21 167.2 8.9 170 534-787 17-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 2.8E-18 9.5E-23 198.9 -4.1 205 418-664 346-567 (567)
119 4b8c_D Glucose-repressible alc 99.6 6.4E-17 2.2E-21 193.6 3.2 125 518-647 207-332 (727)
120 4ezg_A Putative uncharacterize 99.6 3E-15 1E-19 149.2 13.7 152 176-335 41-193 (197)
121 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.6E-20 149.4 12.7 106 201-310 42-147 (197)
122 1w8a_A SLIT protein; signaling 99.6 6.7E-15 2.3E-19 145.8 14.5 138 539-680 11-149 (192)
123 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.5E-18 136.4 14.6 138 539-681 13-150 (193)
124 3sb4_A Hypothetical leucine ri 99.5 1.2E-14 4.2E-19 157.6 7.7 102 298-402 225-327 (329)
125 2ell_A Acidic leucine-rich nuc 99.5 2.7E-14 9.4E-19 138.3 9.2 129 512-642 24-158 (168)
126 3sb4_A Hypothetical leucine ri 99.5 2.1E-14 7.1E-19 155.8 9.2 217 154-377 100-327 (329)
127 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.4E-19 135.5 7.7 126 512-639 17-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.5 2.1E-13 7.1E-18 135.0 13.8 127 495-645 14-140 (193)
129 2o6r_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 133.2 13.5 130 494-646 10-139 (177)
130 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.6E-18 133.4 11.4 132 227-360 24-160 (168)
131 2o6r_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 131.4 14.4 133 538-674 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 1.4E-13 4.7E-18 130.3 10.7 127 227-355 17-148 (149)
133 4fdw_A Leucine rich hypothetic 99.4 6.9E-12 2.4E-16 138.7 21.7 214 157-380 159-379 (401)
134 1ds9_A Outer arm dynein; leuci 99.4 4.8E-15 1.6E-19 147.9 -3.5 82 724-809 93-185 (198)
135 3g39_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 129.8 9.6 90 724-813 30-119 (170)
136 4fs7_A Uncharacterized protein 99.4 1E-11 3.6E-16 138.1 21.1 327 245-636 65-393 (394)
137 4fdw_A Leucine rich hypothetic 99.4 2.5E-11 8.4E-16 134.3 23.1 178 222-408 175-357 (401)
138 1ds9_A Outer arm dynein; leuci 99.4 1.6E-14 5.4E-19 144.1 -3.7 133 602-786 43-186 (198)
139 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 126.7 9.8 89 724-812 33-121 (174)
140 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.7E-17 127.9 8.6 136 531-671 14-154 (176)
141 4fs7_A Uncharacterized protein 99.3 4E-11 1.4E-15 133.4 22.1 288 73-406 66-353 (394)
142 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.2E-17 126.9 8.7 130 511-645 18-154 (176)
143 3g39_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 120.0 11.5 90 583-674 30-119 (170)
144 2r9u_A Variable lymphocyte rec 99.3 2.4E-11 8.2E-16 117.8 11.7 102 539-642 15-116 (174)
145 3un9_A NLR family member X1; l 99.2 5.7E-13 1.9E-17 146.0 -3.3 69 724-792 183-259 (372)
146 3un9_A NLR family member X1; l 99.2 1.7E-12 5.9E-17 142.2 -1.1 87 724-810 155-253 (372)
147 4gt6_A Cell surface protein; l 99.1 4.9E-09 1.7E-13 116.4 23.9 331 267-669 55-390 (394)
148 4gt6_A Cell surface protein; l 99.1 1E-08 3.5E-13 113.8 23.4 327 73-431 58-388 (394)
149 2ifg_A High affinity nerve gro 99.0 8.7E-10 3E-14 120.3 12.0 113 564-681 13-127 (347)
150 2ifg_A High affinity nerve gro 99.0 3.6E-10 1.2E-14 123.3 8.7 87 723-810 30-117 (347)
151 2ra8_A Uncharacterized protein 98.7 9.1E-09 3.1E-13 111.5 6.6 62 147-211 164-227 (362)
152 4h09_A Hypothetical leucine ri 98.7 7.8E-07 2.7E-11 98.0 22.4 300 74-405 42-342 (379)
153 2ra8_A Uncharacterized protein 98.7 4.7E-09 1.6E-13 113.8 3.4 63 724-786 252-321 (362)
154 4h09_A Hypothetical leucine ri 98.7 7.7E-07 2.6E-11 98.1 20.6 63 577-640 280-342 (379)
155 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.6E-12 97.5 2.0 84 729-814 148-238 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 6.7E-08 2.3E-12 94.3 0.4 94 75-168 33-136 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 1.7E-07 5.9E-12 91.4 2.7 117 97-213 30-161 (185)
158 3rw6_A Nuclear RNA export fact 98.3 4.3E-07 1.5E-11 93.0 5.6 79 722-802 168-257 (267)
159 3e4g_A ATP synthase subunit S, 97.9 4.6E-06 1.6E-10 78.9 4.2 86 103-190 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.6 3.7E-05 1.3E-09 72.7 3.8 13 345-357 137-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00014 4.9E-09 70.1 0.9 66 123-188 66-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00032 1.1E-08 67.7 2.9 116 75-190 38-168 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0035 1.2E-07 56.3 5.5 57 727-785 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.0086 3E-07 53.8 6.2 56 494-549 11-68 (130)
165 2lz0_A Uncharacterized protein 41.6 42 0.0014 27.8 5.5 45 571-616 8-52 (100)
166 2lz0_A Uncharacterized protein 33.9 33 0.0011 28.4 3.7 49 592-641 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-89 Score=832.21 Aligned_cols=702 Identities=30% Similarity=0.452 Sum_probs=516.0
Q ss_pred CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCccccceEecCCCCcEEEEECCCCCCccc---CCCCCCccCC
Q 048289 1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGS---IPSDSSLFSL 77 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~~~~~l~~l 77 (920)
|||+||+++.||. ++++|..+++||.|+||+|+ .++|++|+|+++.+.|. +++ ++..+
T Consensus 16 all~~k~~~~~~~---------------~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L 76 (768)
T 3rgz_A 16 QLISFKDVLPDKN---------------LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSL 76 (768)
T ss_dssp HHHHHHTTCSCTT---------------SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTC
T ss_pred HHHHHHhhCCCcc---------------cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhcc
Confidence 7899999997542 68999888999999999998 58999999999999987 777 89999
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCc--cccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289 78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA--EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN 155 (920)
Q Consensus 78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~ 155 (920)
++|+.++++.+.+.. +|+.++++++|++|+|++|.+.+.+|. .++++++|++|++++|.+...... ..+.+++
T Consensus 77 ~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~ 151 (768)
T 3rgz_A 77 TGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV---SGGLKLN 151 (768)
T ss_dssp TTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC---CSCCCCT
T ss_pred CcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH---HHhccCC
Confidence 999999999998744 678899999999999999999998988 899999999999999966432111 1125678
Q ss_pred CCCEEEcCCCCCCCCcchh---ccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289 156 ELQELVLNSVDMSYEVPSF---LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232 (920)
Q Consensus 156 ~L~~L~L~~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 232 (920)
+|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++| .+.+.+|.++.+++|++|
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L 228 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHL 228 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCC-cCCCCCcccccCCCCCEE
Confidence 8888888888887777766 67788888888888887765543 67778888888887 566666667777777777
Q ss_pred EccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcC-CCCCEEECcCCCC
Q 048289 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL-TQLSFLDFSNNQL 311 (920)
Q Consensus 233 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l 311 (920)
++++|.+.+.+|..++.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred ECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 77777777777777777777777777777777666654 67777777777777777777666554 7777777777777
Q ss_pred CCcccccccCCCcCceeeccCccccccCCcc-ccCCCCCCEEEccCCCCCCCchhhhhcCC-CCCEEEccCCcCCCcchh
Q 048289 312 NGPISSSVSRLHSLVTIYLSYNSLNGTIPSG-LFTSPLLESIDLRNNQLTGSISNSISELV-NLIDLSLSSNNLSGNVEL 389 (920)
Q Consensus 312 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~ 389 (920)
.+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.++.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 7777777777777777777777776666655 66677777777777777666666666665 666666666665543221
Q ss_pred hhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCc-CCchhhhcccccceeccCCCccCCCCCchhhccC
Q 048289 390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468 (920)
Q Consensus 390 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 468 (920)
... ...+++|++|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+. .
T Consensus 387 ~~~------------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~ 440 (768)
T 3rgz_A 387 NLC------------------------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--S 440 (768)
T ss_dssp TTT------------------------CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--G
T ss_pred hhh------------------------hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--c
Confidence 110 011345555555555554 4566666666677777776666666665554 2
Q ss_pred CCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcC
Q 048289 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548 (920)
Q Consensus 469 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 548 (920)
++ +|++|++++|.+++.+|..+..+++|++|++++|++
T Consensus 441 l~------------------------------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 441 LS------------------------------------------KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp CT------------------------------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CC------------------------------------------CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 22 444455555555556666666666777777777777
Q ss_pred CCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh
Q 048289 549 NGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL 627 (920)
Q Consensus 549 ~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 627 (920)
++.+|..+...+ |++|++++|++++.+|..+..+++|++|+|++|++++.+|..+.++++|++|++++|+++|.+|..+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 666666666655 6666666666666666666667777777777777776777777777777777777777777777666
Q ss_pred cCCCCCCEEEccCc-eee---------------------cccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccc
Q 048289 628 GALSELQVLILRSN-RFH---------------------GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM 685 (920)
Q Consensus 628 ~~l~~L~~L~L~~N-~l~---------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~ 685 (920)
.....+..+++..+ ++. +..+... ..++.++.++++.|.+.|.+|
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~~g~~~----------- 625 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTS----------- 625 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG--GGGGGTCCSCTTSCEEEEECC-----------
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhh--hccccccccccccceecccCc-----------
Confidence 65555444433321 110 0000000 011112222223333333222
Q ss_pred cCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcC
Q 048289 686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP 765 (920)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 765 (920)
.....++.|+.|||++|+++|.+|.++++++.|+.|+|++|+++|.||
T Consensus 626 --------------------------------~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 626 --------------------------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp --------------------------------CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred --------------------------------hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 122335778999999999999999999999999999999999999999
Q ss_pred cccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccCCcCCCCCCCCCCCCCCC
Q 048289 766 YSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE 845 (920)
Q Consensus 766 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~ 845 (920)
.+|+++++|++||||+|+++|.||..++++++|++||+++|+++|+||.++||.+|...+|.||++|||.|+. .|....
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 897553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-69 Score=654.81 Aligned_cols=633 Identities=31% Similarity=0.430 Sum_probs=477.2
Q ss_pred CCCCEEECCCCCCCCC--CCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289 78 PHLQILNLAFNDFNYS--YISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN 155 (920)
Q Consensus 78 ~~L~~L~Ls~~~~~~~--~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~ 155 (920)
.+++.|+|+++.+.+. .+|+.+.++++|+.++++.+.+. .+|..++++++|++|||++|.+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l---------------- 112 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSL---------------- 112 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEE----------------
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcC----------------
Confidence 4677888888877652 15667788888888888887765 4667788888888888887743
Q ss_pred CCCEEEcCCCCCCCCcch--hccCCCCCCEEEccCCcCCCCCCccc-CCCCCCCEEEccCCCCCCcCCC-C---cCCCCC
Q 048289 156 ELQELVLNSVDMSYEVPS--FLTNLSSLTSLDLGNCGLQGSIPENI-FRLPNLQNLILSYNKNLTSVFP-K---VNWSSP 228 (920)
Q Consensus 156 ~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~-~---~~~l~~ 228 (920)
++.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++| .+.+..+ . +..+++
T Consensus 113 ------------~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 113 ------------SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGE 179 (768)
T ss_dssp ------------EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTT
T ss_pred ------------CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCC
Confidence 334455 66667777777777776666666554 66777777777777 5555544 2 567777
Q ss_pred CCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC
Q 048289 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308 (920)
Q Consensus 229 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 308 (920)
|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 180 L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 77777777777765553 7888899999999988877776 88899999999999999888888899999999999999
Q ss_pred CCCCCcccccccCCCcCceeeccCccccccCCccccCC-CCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcc
Q 048289 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNV 387 (920)
Q Consensus 309 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 387 (920)
|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..+..+++|++|++++|.+++.+
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 9888776665 78899999999999988888888775 89999999999999888999999999999999999888777
Q ss_pred hhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhccc-ccceeccCCCccCCCCCchhhc
Q 048289 388 ELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH-RLQILDLSDNQIRGGIPNWIWN 466 (920)
Q Consensus 388 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~ 466 (920)
+...+..+++|++|++++|.++. .+|..+..++ +|+.|++++|.+.+.+|..+..
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~------------------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSG------------------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEE------------------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CHHHHhcCCCCCEEeCcCCccCc------------------------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 77767777777777777766542 2566676666 7888888888777666655431
Q ss_pred cCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCC
Q 048289 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNN 546 (920)
Q Consensus 467 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 546 (920)
.. +++|++|++++|.+++.+|..+.++++|++|++++|
T Consensus 391 ~~------------------------------------------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 391 NP------------------------------------------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ST------------------------------------------TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred cc------------------------------------------cCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 11 235666667777777777777777777777777777
Q ss_pred cCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCch
Q 048289 547 SLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA 625 (920)
Q Consensus 547 ~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 625 (920)
++++.+|..+...+ |+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 77777777777666 77777777777777777777777888888888888777777777888888888888888877788
Q ss_pred hhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceecc----
Q 048289 626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY---- 701 (920)
Q Consensus 626 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~---- 701 (920)
+++.+++|++|++++|++++.+|..+ ..+++|+.||+++|+++|.+|..++.... +....... .....+...
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIA-GKRYVYIKNDGMK 584 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTT-CBCCSTTC-SCEEEEEECCSCC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccc-hhhhhccc-ccccccccccccc
Confidence 88888888888888888877777665 45677888888888888888766543221 11111000 000000000
Q ss_pred -CcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCC
Q 048289 702 -GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLS 780 (920)
Q Consensus 702 -~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls 780 (920)
............+........+..+..++++.|.++|.+|..++.++.|+.|||++|+++|.+|.+++++++|++|||+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 0000111122333333333445667788999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcccccCCCCCCeeeccCCcccCCCCCC
Q 048289 781 SNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815 (920)
Q Consensus 781 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 815 (920)
+|+++|.||..++++++|++||+|+|+++|.||..
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 99999999999999999999999999999999975
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-57 Score=546.53 Aligned_cols=604 Identities=23% Similarity=0.229 Sum_probs=385.0
Q ss_pred EEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcC
Q 048289 56 GLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS 135 (920)
Q Consensus 56 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls 135 (920)
.++++++.+. .+|. .+. +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++|+++
T Consensus 8 ~~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 8 VADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp EEECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred eeECCCCCcc-cccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 3555566554 4554 332 5677777777766652 33346666777777777776666666666666666666666
Q ss_pred CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC
Q 048289 136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN 215 (920)
Q Consensus 136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 215 (920)
+|.+. ...+..|+++++|++|++++|.+.+..|..++++++|++|++++| .
T Consensus 82 ~n~l~----------------------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 132 (680)
T 1ziw_A 82 HNELS----------------------------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-G 132 (680)
T ss_dssp SSCCC----------------------------CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-C
T ss_pred CCccC----------------------------ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-c
Confidence 66443 333345666666666666666666555556666666666666666 4
Q ss_pred CCcCCC-CcCCCCCCCEEEccCCcCccccccccc--CCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccch
Q 048289 216 LTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLG--NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292 (920)
Q Consensus 216 ~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 292 (920)
+.+..+ .++.+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++.++.+.....
T Consensus 133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 444444 556666677777777777666555543 45788888888888887777788888888888888877664332
Q ss_pred hhhh---cCCCCCEEECcCCCCCCcccccccCCCc--CceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhh
Q 048289 293 CIFA---NLTQLSFLDFSNNQLNGPISSSVSRLHS--LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSI 367 (920)
Q Consensus 293 ~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 367 (920)
..+. ..++|+.|++++|.+.+..+..+..++. |++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT
T ss_pred HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh
Confidence 2221 3478888888888888877777777754 8888888888877777778888888888888888887777778
Q ss_pred hcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc-hhhhccccc
Q 048289 368 SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRL 446 (920)
Q Consensus 368 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L 446 (920)
..+++|+.|++++|...+.+.... ++ .++ ..+..+++|
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~---lp--------------------------------------~i~~~~~~~l~~L 331 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLAS---LP--------------------------------------KIDDFSFQWLKCL 331 (680)
T ss_dssp TTCTTCCEEECTTCBCCC---------CC--------------------------------------EECTTTTTTCTTC
T ss_pred cCCCCccEEeccchhhhccccccc---cc--------------------------------------ccChhhcccCCCC
Confidence 888888888887765443221100 00 000 134445556
Q ss_pred ceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCc--cCCCCcccceEecccCcCCCCCCCCCCCCceEEecCcee
Q 048289 447 QILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKL 524 (920)
Q Consensus 447 ~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l 524 (920)
+.|++++|.+.+..+..+. .+++|++|++++|.+... ....+..+ ..++|+.|++++|++
T Consensus 332 ~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~~~----------------~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSL----------------AHSPLHILNLTKNKI 393 (680)
T ss_dssp CEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEECTTTTGGG----------------TTSCCCEEECTTSCC
T ss_pred CEEECCCCccCCCChhHhc--cccCCcEEECCCCchhhhhcchhhhccc----------------ccCcCceEECCCCCC
Confidence 6666666666555554444 455555555555543211 11111000 013566666777777
Q ss_pred cccCcccccCCCCcCeEeCCCCcCCCcCc-ccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccc--cccC
Q 048289 525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIP-PCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE--GSVP 600 (920)
Q Consensus 525 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p 600 (920)
++..|.+|..+++|+.|++++|.+.+.+| ..+.... |+.|++++|++.+..+..|..+++|+.|++++|.++ +..|
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 66667777777777777777777765544 3344444 555566555555555555555556666666665554 3455
Q ss_pred ccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhh
Q 048289 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQN 680 (920)
Q Consensus 601 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 680 (920)
..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+.. +|....
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------~~~~~~-- 529 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA----------------------NPGGPI-- 529 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT----------------------STTSCC--
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh----------------------ccCCcc--
Confidence 55555555555555555555555555555555555555555544321111 010000
Q ss_pred hhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccc
Q 048289 681 FQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKL 760 (920)
Q Consensus 681 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 760 (920)
.....++.|+.|+|++|+++...+..|+++++|+.|+|++|++
T Consensus 530 -------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 530 -------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp -------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 0011246678899999999855455688999999999999999
Q ss_pred cCCcCcccccccCCccccCCCCcccccCccccc-CCCCCCeeeccCCcccCCCCC
Q 048289 761 TGLIPYSLENLTQLESLDLSSNKVAGEIPWQLT-SLNFLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 761 ~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~ls~N~l~g~iP~ 814 (920)
++..+..|..+++|++|+|++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 988888889999999999999999998888887 788999999999998877654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.5e-55 Score=527.93 Aligned_cols=593 Identities=21% Similarity=0.223 Sum_probs=375.2
Q ss_pred CEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEE
Q 048289 81 QILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQEL 160 (920)
Q Consensus 81 ~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L 160 (920)
++++++++.++. +|..+. +++++|+|++|.+++..+..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----------------------- 59 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN----------------------- 59 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-----------------------
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-----------------------
Confidence 345666665544 554443 55666666666665444445555555555555555
Q ss_pred EcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCc
Q 048289 161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM 240 (920)
Q Consensus 161 ~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 240 (920)
.+++..|..++++++|++|++++|.+++..+..|+.+++|++|++++| .+ .
T Consensus 60 -----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l-----------------------~ 110 (680)
T 1ziw_A 60 -----TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SI-----------------------Q 110 (680)
T ss_dssp -----CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CC-----------------------C
T ss_pred -----ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-cc-----------------------C
Confidence 333455666667777777777777776444445666666666666666 33 3
Q ss_pred ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhh--cCCCCCEEECcCCCCCCccccc
Q 048289 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA--NLTQLSFLDFSNNQLNGPISSS 318 (920)
Q Consensus 241 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~ 318 (920)
+..|..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 33334445555555555555555544444455555555555555555544444332 3345555555555555555555
Q ss_pred ccCCCcCceeeccCccccccCCccc---cCCCCCCEEEccCCCCCCCchhhhhcCCC--CCEEEccCCcCCCcchhhhhh
Q 048289 319 VSRLHSLVTIYLSYNSLNGTIPSGL---FTSPLLESIDLRNNQLTGSISNSISELVN--LIDLSLSSNNLSGNVELYMFA 393 (920)
Q Consensus 319 l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~ 393 (920)
+..+++|+.+++.++.+.+.....+ ...++|+.|++++|.+.+..+..+..++. |+.|++++|.+++ +....+.
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~ 269 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFA 269 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCccccc
Confidence 5555555555555544432111111 02245566666666655555555554432 5555555555542 1112222
Q ss_pred hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCc
Q 048289 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLN 473 (920)
Q Consensus 394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~ 473 (920)
.+++|++|++++|.++. ..|..+..+++|+.|++++|...+.++..
T Consensus 270 ~l~~L~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~---------- 315 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQH------------------------LFSHSLHGLFNVRYLNLKRSFTKQSISLA---------- 315 (680)
T ss_dssp TCTTCCEEECCSCCBSE------------------------ECTTTTTTCTTCCEEECTTCBCCC---------------
T ss_pred CcccccEeeCCCCccCc------------------------cChhhhcCCCCccEEeccchhhhcccccc----------
Confidence 22233333222222211 12344555555666666554433221100
Q ss_pred EEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcC-
Q 048289 474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI- 552 (920)
Q Consensus 474 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~- 552 (920)
.++.+. ......+++|++|++++|.+++..+..|.++++|++|++++|.+....
T Consensus 316 ---------------~lp~i~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 316 ---------------SLPKID----------DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp ----------------CCEEC----------TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred ---------------cccccC----------hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 000000 000112457778888888888888888888999999999998765321
Q ss_pred c-ccccc---cccceeecCCCcccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCCcccccCchhh
Q 048289 553 P-PCLAN---SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNNRINGTFPAWL 627 (920)
Q Consensus 553 p-~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l 627 (920)
+ ..+.. ..|+.|++++|++++..|..|..+++|+.|++++|++++.+| ..|.++++|++|++++|++.+..+..|
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh
Confidence 2 22222 249999999999999999999999999999999999987666 688999999999999999998888999
Q ss_pred cCCCCCCEEEccCceee--cccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289 628 GALSELQVLILRSNRFH--GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY 705 (920)
Q Consensus 628 ~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 705 (920)
..+++|++|++++|.+. +.+|..+ ..+++|+.|++++|++++..| ..+.+
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~i~~-~~~~~------------------------- 502 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIANIND-DMLEG------------------------- 502 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCCCCT-TTTTT-------------------------
T ss_pred hcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCcCCh-hhhcc-------------------------
Confidence 99999999999999987 3455544 568899999999999986544 22222
Q ss_pred eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch--------hhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289 706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP--------EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777 (920)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 777 (920)
++.|++|+|++|.+++..+ ..++.+++|+.|+|++|+++...+..|+++++|++|
T Consensus 503 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 503 -----------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp -----------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -----------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 4567899999999986422 247899999999999999997666789999999999
Q ss_pred cCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCC--CCCCCCcccccCCcCCCC
Q 048289 778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGK--QFHTFSSDSYNGNMGLCG 834 (920)
Q Consensus 778 ~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg 834 (920)
||++|++++..|..|..+++|++|++++|++++..|... .+.........|||..|.
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999998888889999999999999999998766421 233333444455555554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-51 Score=486.77 Aligned_cols=536 Identities=21% Similarity=0.188 Sum_probs=330.5
Q ss_pred EEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCC
Q 048289 159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGC 237 (920)
Q Consensus 159 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n 237 (920)
.++.++..++ .+|..+. +.+++|++++|.+++..|..|.++++|++|++++| .+....| .|..+++|++|++++|
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCC
Confidence 4555554444 2333332 24555555555555544555555555555555555 3333333 3444444444444444
Q ss_pred cCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccc
Q 048289 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS 317 (920)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 317 (920)
.+.+..|.+++++++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 44444444444444444444444444433334444444444444444444432212222244444444444444444344
Q ss_pred cccCCCcCc--eeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhc
Q 048289 318 SVSRLHSLV--TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAEL 395 (920)
Q Consensus 318 ~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 395 (920)
.++.+++|+ +|++++|.+.+..|.. .....|+.|++++|. ..+..+.. +
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~~~~L~~L~l~~~~---~~~~~~~~-------------------------l 222 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGA-FDSAVFQSLNFGGTQ---NLLVIFKG-------------------------L 222 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTT-TTTCEEEEEECTTCS---CHHHHHHH-------------------------T
T ss_pred hhhhhcccceeEEecCCCccCccChhH-hhhccccccccCCch---hHHHHhhh-------------------------c
Confidence 444444444 4444444444322222 122334444444332 12222222 2
Q ss_pred CCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCC-chhhhccc--ccceeccCCCccCCCCCchhhccCCCCC
Q 048289 396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEF-PDFLRTQH--RLQILDLSDNQIRGGIPNWIWNVGKDTL 472 (920)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~~~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~L 472 (920)
.++....+....+... . ...+ +..+..+. +|+.|++++|.+.+..+..+. .+++|
T Consensus 223 ~~~~l~~l~~~~~~~~------------~--------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L 280 (606)
T 3t6q_A 223 KNSTIQSLWLGTFEDM------------D--------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH--CFSGL 280 (606)
T ss_dssp TTCEEEEEECCCCTTS------------C--------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT--TCTTC
T ss_pred cccchhheechhhccc------------c--------ccccChhHhchhhcCceeEEEeecCccCccCHHHhc--cccCC
Confidence 2222221111111000 0 0001 11122211 455555665555554444444 44455
Q ss_pred cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcC
Q 048289 473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI 552 (920)
Q Consensus 473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 552 (920)
++|++++|.++.++.. + ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus 281 ~~L~l~~n~l~~lp~~-l------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 281 QELDLTATHLSELPSG-L------------------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp SEEECTTSCCSCCCSS-C------------------CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred CEEeccCCccCCCChh-h------------------cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 5555555544433210 0 11346777777777777777778888888888888888888666
Q ss_pred ccc-ccccc-cceeecCCCcccccC--CccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCch-hh
Q 048289 553 PPC-LANSS-LWFLDMRMNNFHGSI--PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA-WL 627 (920)
Q Consensus 553 p~~-~~~~~-L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l 627 (920)
|.. +...+ |++|++++|.+++.. +..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..|. .+
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 554 55555 888888888888766 77888899999999999999888888899999999999999999877654 48
Q ss_pred cCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCC-ch-HHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289 628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVL-PT-RYFQNFQAMMHGNNNSAEGGNMYINYGNEY 705 (920)
Q Consensus 628 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 705 (920)
..+++|++|++++|.+.+..|..+ ..+++|+.|++++|++++.. |. ..+
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~--------------------------- 472 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL--------------------------- 472 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG---------------------------
T ss_pred hCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh---------------------------
Confidence 889999999999999888777655 45789999999999887632 11 111
Q ss_pred eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289 706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785 (920)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 785 (920)
..++.|+.|++++|.+++.+|..|+.+++|+.|+|++|++++.+|+.+.++++| +||+++|+++
T Consensus 473 ---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 473 ---------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp ---------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred ---------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 124678999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCcccccCCCCCCeeeccCCcccCCCC
Q 048289 786 GEIPWQLTSLNFLQVLNLSQNQLVGPIP 813 (920)
Q Consensus 786 g~ip~~l~~l~~L~~L~ls~N~l~g~iP 813 (920)
+.+|..+..+++|+++++++|++.+..|
T Consensus 537 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 537 IILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999998766
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-50 Score=482.75 Aligned_cols=540 Identities=19% Similarity=0.181 Sum_probs=399.1
Q ss_pred CCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 048289 129 LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNL 208 (920)
Q Consensus 129 L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 208 (920)
-++++.++..+..++... ...+++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL 86 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceEECCCCCcccCcCCC-------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence 347888887776655321 2479999999999999989999999999999999999998889999999999999
Q ss_pred EccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcC
Q 048289 209 ILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287 (920)
Q Consensus 209 ~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 287 (920)
++++| .+.+..| .++.+++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 87 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 87 VLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred eCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 99999 6777666 899999999999999999988788899999999999999999975544555699999999999999
Q ss_pred cccchhhhhcCCCCC--EEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchh
Q 048289 288 TGQIPCIFANLTQLS--FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN 365 (920)
Q Consensus 288 ~~~~p~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 365 (920)
++..|..++.+++|+ .|++++|.+.+..+..+.. .+|++|++++|.. ++..+..+..++...+....+.+
T Consensus 166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~---- 237 (606)
T 3t6q_A 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFED---- 237 (606)
T ss_dssp CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTT----
T ss_pred cccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhcc----
Confidence 988899999999999 9999999999887776654 6899999999862 33444444444443333222211
Q ss_pred hhhcCCCCCEEEccCCcCCCcchhhhhhhcC--CCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcc
Q 048289 366 SISELVNLIDLSLSSNNLSGNVELYMFAELK--NLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ 443 (920)
Q Consensus 366 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~ 443 (920)
+...+ +....+..+. +|+.|++++|.++... ......+++|++|++++|.++.+|+.+..+
T Consensus 238 -------~~~~~---------i~~~~~~~l~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l 300 (606)
T 3t6q_A 238 -------MDDED---------ISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELPSGLVGL 300 (606)
T ss_dssp -------SCCCC---------CCGGGGGGGGGSEEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSCCSCCCSSCCSC
T ss_pred -------ccccc---------cChhHhchhhcCceeEEEeecCccCccC-HHHhccccCCCEEeccCCccCCCChhhccc
Confidence 11001 1111222221 3444444444443221 111223444555555555555555555555
Q ss_pred cccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCce
Q 048289 444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNK 523 (920)
Q Consensus 444 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~ 523 (920)
++|++|++++|.+.+..|..+. .++ +|++|++++|.
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~--~l~------------------------------------------~L~~L~l~~n~ 336 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISAS--NFP------------------------------------------SLTHLSIKGNT 336 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGG--GCT------------------------------------------TCSEEECCSCS
T ss_pred ccCCEEECccCCcCcCchhhhh--ccC------------------------------------------cCCEEECCCCC
Confidence 5555555555555543333332 222 33444444444
Q ss_pred ecccCcc-cccCCCCcCeEeCCCCcCCCcC--cccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCcccccc
Q 048289 524 LSGEIPL-SFCNMSSIFYVNLSNNSLNGMI--PPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599 (920)
Q Consensus 524 l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 599 (920)
+.+.+|. .+..+++|++|++++|.+++.. +..+...+ |+.|++++|++.+..|..|..+++|+.|++++|++++..
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 4433332 3666777777777777776554 55555555 778888888887777888888888999999998888766
Q ss_pred Cc-cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecc-cCCCcccCCCCCCcEEEccCCcCcCCCchHH
Q 048289 600 PL-SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP-ITYSVTRFPFPKLRILDLSNNEFTGVLPTRY 677 (920)
Q Consensus 600 p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 677 (920)
|. .+..+++|++|++++|++++..|..+..+++|++|++++|++.+. ++.......+++|+.|++++|++++..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 54 488888999999999998888888888899999999999988763 3333334568899999999999987766432
Q ss_pred HhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccC
Q 048289 678 FQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757 (920)
Q Consensus 678 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 757 (920)
.+ ++.|+.|||++|++++.+|..+.+++.| .|+|++
T Consensus 497 -~~------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 497 -TS------------------------------------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp -TT------------------------------------------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred -cc------------------------------------------ccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 21 4668999999999999999999999999 999999
Q ss_pred ccccCCcCcccccccCCccccCCCCcccccCc
Q 048289 758 NKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789 (920)
Q Consensus 758 N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 789 (920)
|++++.+|..++.+++|+.|++++|++++..+
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999998765
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-51 Score=500.87 Aligned_cols=564 Identities=23% Similarity=0.234 Sum_probs=397.3
Q ss_pred EEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCC-C-CcCCCCCCCEEEccC
Q 048289 159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF-P-KVNWSSPLRFMDLYG 236 (920)
Q Consensus 159 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~-~~~~l~~L~~L~L~~ 236 (920)
..+.++++++.. |. -.++|++|++++|.+++..|..+.++++|++|++++| ...+.+ + .+..+++|++|++++
T Consensus 8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCC
Confidence 344444455433 33 3367777788877777767777777888888888777 333333 3 677777788888888
Q ss_pred CcCcccccccccCCCCCCEEeCcCCcCCccCccc--ccCCCCCCEEEccCCcCcccch-hhhhcCCCCCEEECcCCCCCC
Q 048289 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPST--LSNLQQLRHLDLSNNKFTGQIP-CIFANLTQLSFLDFSNNQLNG 313 (920)
Q Consensus 237 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~ 313 (920)
|.+.+..|.+|+++++|++|++++|.+++..|.. +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8887777888888888888888888887655554 7788888888888888876544 567888888888888888887
Q ss_pred cccccccCC--CcCceeeccCccccccCCccccCCCC------CCEEEccCCCCCCCchhhhhcC---CCCCEEEccCCc
Q 048289 314 PISSSVSRL--HSLVTIYLSYNSLNGTIPSGLFTSPL------LESIDLRNNQLTGSISNSISEL---VNLIDLSLSSNN 382 (920)
Q Consensus 314 ~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~ 382 (920)
..+..+..+ ++|+.|++++|.+.+..|..+..++. |+.|++++|.+.+..+..+... .+++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 777777766 77888888888887766666555544 7777777777666655544432 334444444222
Q ss_pred CCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCC-chhhhc--ccccceeccCCCccCCC
Q 048289 383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEF-PDFLRT--QHRLQILDLSDNQIRGG 459 (920)
Q Consensus 383 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~--~~~L~~L~Ls~n~l~~~ 459 (920)
... . +..+.+... +..+.. .++|+.|++++|.+.+.
T Consensus 243 ~~~-------------------------~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 243 MGA-------------------------G----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp CBC-------------------------S----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccc-------------------------c----------------ccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 110 0 000011100 111111 24455556665555544
Q ss_pred CCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcC
Q 048289 460 IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF 539 (920)
Q Consensus 460 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 539 (920)
.+..+. .+++|+.|++++|.++.+....+. .+++|++|++++|.+++..|..|..+++|+
T Consensus 282 ~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 282 NSRVFE--TLKDLKVLNLAYNKINKIADEAFY------------------GLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp CSCCSS--SCCCCCEEEEESCCCCEECTTTTT------------------TCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred Chhhhh--cCCCCCEEECCCCcCCCCChHHhc------------------CCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 444443 444444444444444433322221 246889999999999988899999999999
Q ss_pred eEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289 540 YVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR 618 (920)
Q Consensus 540 ~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (920)
.|++++|.+.+..+..+...+ |+.|++++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|++++|+
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENR 412 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCc
Confidence 999999999888777787777 999999999998532 3788999999999998 45543 4679999999999
Q ss_pred ccccC-chhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcc
Q 048289 619 INGTF-PAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697 (920)
Q Consensus 619 l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 697 (920)
+++.. +..+..+++|++|++++|++++..+... ...+++|+.|++++|.+++..+....
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~~------------------- 472 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELC------------------- 472 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCCC-------------------
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccccccccc-------------------
Confidence 98653 3346689999999999999986544322 23478999999999999854332100
Q ss_pred eeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777 (920)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 777 (920)
......++.|+.|||++|++++.+|..|+.+++|+.|+|++|++++..|..+. ++|+.|
T Consensus 473 -------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 473 -------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp -------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred -------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 00011256789999999999999999999999999999999999998888777 899999
Q ss_pred cCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccCCcCCCCCCCCCCCCCCC
Q 048289 778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE 845 (920)
Q Consensus 778 ~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~ 845 (920)
||++|++++.+|..|. +|+++++++|++.+..+. ..|......++..+||.|....|..+.
T Consensus 532 ~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 532 DISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp EEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred ECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCCch
Confidence 9999999999998765 689999999999887663 233322234566778877766786543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-50 Score=482.34 Aligned_cols=536 Identities=19% Similarity=0.173 Sum_probs=336.9
Q ss_pred CCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEcc
Q 048289 157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLY 235 (920)
Q Consensus 157 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~ 235 (920)
-++++++++.++. +|..+. +++++|++++|.+++..+..+.++++|++|++++| .+.+..+ .+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECC
Confidence 3567777776653 344333 67777777777777666667777777777777777 4555544 56666777777777
Q ss_pred CCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCc
Q 048289 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGP 314 (920)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (920)
+|.+.+..|.+|+++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|++++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 777666666667777777777777776665555666667777777777776664 4566666667777777777666665
Q ss_pred ccccccCCCcCc----eeeccCccccccCCccccCCCCCCEEEccCCCCC-CCchhhhhcCCCCCEEEccCCcCCCcchh
Q 048289 315 ISSSVSRLHSLV----TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT-GSISNSISELVNLIDLSLSSNNLSGNVEL 389 (920)
Q Consensus 315 ~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 389 (920)
.+..++.+++|+ +|++++|.+.+ ++.......+|++|++++|.+. +..+..+..++.|+.+++..+.+.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~---- 243 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD---- 243 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT----
T ss_pred ChhhhhhhhccccccceeeccCCCcce-eCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc----
Confidence 555555554443 56666666553 2222233335555555555554 2334444555555554444332221
Q ss_pred hhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceecc-CCCccCCCCCchhhccC
Q 048289 390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDL-SDNQIRGGIPNWIWNVG 468 (920)
Q Consensus 390 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~L-s~n~l~~~~~~~~~~~~ 468 (920)
........ ...+..+..+ .++.+++ ..+.+.+.+|. +. .
T Consensus 244 ---------------------~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~--~ 283 (606)
T 3vq2_A 244 ---------------------ERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FH--C 283 (606)
T ss_dssp ---------------------SCCCSCCC---------------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CG--G
T ss_pred ---------------------CCcccccC---------------hHHhhhhhhc-cHhheeccccccccccccc-cc--c
Confidence 10000000 0001111111 2444444 44444444444 32 4
Q ss_pred CCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCc
Q 048289 469 KDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547 (920)
Q Consensus 469 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 547 (920)
+++|+.|++++|.++.++. ..+ ++|++|++++|.+ +.+| .+ .+++|+.|++++|+
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~---------------------~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKH---------------------FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTT---------------------CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCS
T ss_pred CCCCCEEEecCccchhhhhcccc---------------------ccCCEEEcccccC-cccc-cC-CCCccceeeccCCc
Confidence 4555555555555544331 112 3445555555555 3444 33 55666666666664
Q ss_pred CCCcCcccccccc-cceeecCCCccccc--CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCc
Q 048289 548 LNGMIPPCLANSS-LWFLDMRMNNFHGS--IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFP 624 (920)
Q Consensus 548 l~~~~p~~~~~~~-L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 624 (920)
..+.+ .+...+ |+.|++++|.+++. .|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|++.+..|
T Consensus 340 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 340 GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred Cccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 44332 222333 66666666666654 36666777777777777777764 55677777777777777777776666
Q ss_pred -hhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCC-CchHHHhhhhccccCCCCCCCCCcceeccC
Q 048289 625 -AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV-LPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702 (920)
Q Consensus 625 -~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 702 (920)
..+..+++|++|++++|++.+..|..+ ..+++|+.|++++|++++. +|.. +.
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~----------------------- 470 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FA----------------------- 470 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-----------------------
T ss_pred hhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hc-----------------------
Confidence 567777777777777777777666554 4567778888888877763 3321 11
Q ss_pred cceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCC
Q 048289 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782 (920)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 782 (920)
.++.|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..|+++++|++|||++|
T Consensus 471 -------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 471 -------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp -------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred -------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 1456789999999999888889999999999999999999999999999999999999999
Q ss_pred cccccCcccccCCC-CCCeeeccCCcccCCCCC
Q 048289 783 KVAGEIPWQLTSLN-FLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 783 ~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~ 814 (920)
+++ .+|..+..++ +|+++++++|++.+..|.
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999 6777788886 599999999999876663
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-50 Score=494.50 Aligned_cols=533 Identities=20% Similarity=0.253 Sum_probs=350.2
Q ss_pred EECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccC-CccccCCCCCCEEEcC
Q 048289 57 LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQI-PAEISHLSKLVSLDLS 135 (920)
Q Consensus 57 L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls 135 (920)
.+.+++++. .+|. ..++|++|+|++|.++.. .|..|.++++|++|+|++|...+.+ |..+.++++|++|+|+
T Consensus 9 ~dcs~~~L~-~vP~-----lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ-----VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEESCCCSS-CCCS-----SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEccCCCCC-CCCC-----CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 344555554 3332 345667777777766553 4556666777777777766544344 5556666666666666
Q ss_pred CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcc--cCCCCCCCEEEccCC
Q 048289 136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPEN--IFRLPNLQNLILSYN 213 (920)
Q Consensus 136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n 213 (920)
+|.+ .+..|..|.++++|++|++++|.+.+.+|.. +.++++|++|++++|
T Consensus 82 ~N~l----------------------------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 82 SSKI----------------------------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp TCCC----------------------------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CCcC----------------------------cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 6643 3445666667777777777777766555543 666777777777776
Q ss_pred CCCCcCCC--CcCCCCCCCEEEccCCcCcccccccccCC--CCCCEEeCcCCcCCccCcccccCCCC------CCEEEcc
Q 048289 214 KNLTSVFP--KVNWSSPLRFMDLYGCNFMGSIPASLGNL--SQLTYLDLSYNNFSGHIPSTLSNLQQ------LRHLDLS 283 (920)
Q Consensus 214 ~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~ 283 (920)
.+.+..+ .++.+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..++.+++ |++|+++
T Consensus 134 -~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 134 -QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp -CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred -cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 3443322 45666666666666666666666666655 66777777777776666655555544 6777777
Q ss_pred CCcCcccchhhhhcC---CCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccC--CCCCCEEEccCCC
Q 048289 284 NNKFTGQIPCIFANL---TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT--SPLLESIDLRNNQ 358 (920)
Q Consensus 284 ~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~ 358 (920)
+|.+++..+..+... .+++.+.+..+.+... ...+.+.+..+..+.. .++|+.|++++|.
T Consensus 213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCc
Confidence 776665555544432 4556666553322110 0111222112222222 2567888888887
Q ss_pred CCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCch
Q 048289 359 LTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPD 438 (920)
Q Consensus 359 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~ 438 (920)
+.+..+..+..+++|+.|++++|.+.+.. |.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-------------------------------------------------~~ 308 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIA-------------------------------------------------DE 308 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEEC-------------------------------------------------TT
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCC-------------------------------------------------hH
Confidence 77766777777777777777777765321 12
Q ss_pred hhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEE
Q 048289 439 FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFIS 518 (920)
Q Consensus 439 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~ 518 (920)
.+..+++|++|++++|.+.+..|..+. .+ ++|+.|+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l------------------------------------------~~L~~L~ 344 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFY--GL------------------------------------------PKVAYID 344 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCS--SC------------------------------------------TTCCEEE
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhc--CC------------------------------------------CCCCEEE
Confidence 233333444444444444433333332 22 2445555
Q ss_pred ecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccc
Q 048289 519 VSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGS 598 (920)
Q Consensus 519 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 598 (920)
+++|++.+..+..|..+++|++|++++|.+++. +. ...|+.|++++|+++. +|.. ..+++.|++++|++++.
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENL 416 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSS
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCccc-cccc---ccccceeecccCccccC
Confidence 555556556667788899999999999999853 22 2239999999999984 4443 46799999999999864
Q ss_pred cC-ccccCCCCCcEEECCCCcccccCch-hhcCCCCCCEEEccCceeecccCCCc---ccCCCCCCcEEEccCCcCcCCC
Q 048289 599 VP-LSLVNCSFLEVLDVGNNRINGTFPA-WLGALSELQVLILRSNRFHGPITYSV---TRFPFPKLRILDLSNNEFTGVL 673 (920)
Q Consensus 599 ~p-~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~ 673 (920)
.. ..+.++++|++|++++|++++..+. .+..+++|++|++++|.+.+..+... .+..+++|+.|+|++|++++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 33 3356899999999999999976544 45678999999999999975433221 1245789999999999999766
Q ss_pred chHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceE
Q 048289 674 PTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGL 753 (920)
Q Consensus 674 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L 753 (920)
|.. +.+ ++.|+.|||++|++++..|..+. ++|+.|
T Consensus 497 ~~~-~~~------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 497 PGV-FSH------------------------------------------LTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp TTS-SSS------------------------------------------CCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred hhH-ccc------------------------------------------hhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 632 221 46789999999999987777666 899999
Q ss_pred eccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289 754 NFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789 (920)
Q Consensus 754 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 789 (920)
+|++|++++.+|..|. +|+.|++++|.+.+..+
T Consensus 532 ~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 532 DISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred ECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 9999999999998764 78999999999988655
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-49 Score=469.61 Aligned_cols=536 Identities=21% Similarity=0.219 Sum_probs=345.5
Q ss_pred EEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcC
Q 048289 56 GLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS 135 (920)
Q Consensus 56 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls 135 (920)
+++.++..+. .+|. .+. ++|++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 15 ~~~c~~~~l~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCS-SCCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCcc-cCCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 4666777665 4554 332 6777777777777653 44467777777777777777776666667777777777777
Q ss_pred CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC
Q 048289 136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN 215 (920)
Q Consensus 136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 215 (920)
+|++ ++..|..|+++++|++|++++|.+.+..+..++++++|++|++++| .
T Consensus 89 ~n~l----------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 139 (606)
T 3vq2_A 89 GNPI----------------------------QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-F 139 (606)
T ss_dssp TCCC----------------------------CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-C
T ss_pred CCcc----------------------------cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-c
Confidence 6643 3455677788888888888888887666677788888888888777 3
Q ss_pred CCc-CCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCC----EEeCcCCcCCccCcccccCCCCCCEEEccCCcCc-
Q 048289 216 LTS-VFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLT----YLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT- 288 (920)
Q Consensus 216 ~~~-~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~- 288 (920)
+.+ .+| .++.+++|++|++++|.+.+..+..++.+++|+ +|++++|.+++..+..+... +|++|++++|.+.
T Consensus 140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS 218 (606)
T ss_dssp CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCH
T ss_pred ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccch
Confidence 432 334 556666666666666666655555554444333 56666666554443333333 5666666666554
Q ss_pred ccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEc-cCCCCCCCchhhh
Q 048289 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL-RNNQLTGSISNSI 367 (920)
Q Consensus 289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l 367 (920)
+..|..+.++++|+.+++..+.+... ..+.. +....+..+..+ .++.+++ ..+.+.+.++. +
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~ 281 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F 281 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-C
T ss_pred hHHHHHhccccccccccccccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc-c
Confidence 34445555555555555543332211 00000 000011111111 2334444 33444444443 4
Q ss_pred hcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccc
Q 048289 368 SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQ 447 (920)
Q Consensus 368 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~ 447 (920)
..+++|+.|++++|.+.. ++ .+. .+++|++|++++|.++.+|.. .+++|+
T Consensus 282 ~~l~~L~~L~l~~~~~~~-l~--~l~-------------------------~~~~L~~L~l~~n~l~~lp~~--~l~~L~ 331 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKY-LE--DVP-------------------------KHFKWQSLSIIRCQLKQFPTL--DLPFLK 331 (606)
T ss_dssp GGGTTCSEEEEESCCCCC-CC--CCC-------------------------TTCCCSEEEEESCCCSSCCCC--CCSSCC
T ss_pred ccCCCCCEEEecCccchh-hh--hcc-------------------------ccccCCEEEcccccCcccccC--CCCccc
Confidence 445555555555554431 11 233 334444444444444444422 445555
Q ss_pred eeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCcc-----CCCCcccceEecccCcCCCCCCC--CCCCCceEEec
Q 048289 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-----LLPWKNLRYLDLRSNSLKGSIPF--LPPSLNFISVS 520 (920)
Q Consensus 448 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~L~~L~L~~n~l~~~~~~--~~~~L~~L~l~ 520 (920)
.|++++|+..+.. .+. .+++|++|++++|.+++.. ...+++|++|++++|.+.+.... .+++|++|+++
T Consensus 332 ~L~l~~n~~~~~~--~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 332 SLTLTMNKGSISF--KKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp EEEEESCSSCEEC--CCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred eeeccCCcCccch--hhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 5555555333222 111 4455555555555555442 12345566666666665543322 25788899999
Q ss_pred CceecccCc-ccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccc-cCCccccCCCcccEEEccCCcccc
Q 048289 521 NNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHG-SIPQTFSKGSRLTILNLNDNQLEG 597 (920)
Q Consensus 521 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 597 (920)
+|++.+..| ..+..+++|++|++++|.+++..|..+...+ |+.|++++|.+++ .+|..+..+++|+.|++++|++++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 999988877 6888999999999999999988888888777 9999999999998 478899999999999999999999
Q ss_pred ccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCC-CCcEEEccCCcCcCCCchH
Q 048289 598 SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP-KLRILDLSNNEFTGVLPTR 676 (920)
Q Consensus 598 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~ 676 (920)
..|..+.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+ ..++ +|+.|++++|++.+..+..
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~--~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL--QHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG--GGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH--hhhcccCcEEEccCCCcccCCccH
Confidence 99999999999999999999999999999999999999999999998 455553 4565 6999999999999988876
Q ss_pred HHhhh
Q 048289 677 YFQNF 681 (920)
Q Consensus 677 ~~~~l 681 (920)
++..+
T Consensus 565 ~~~~~ 569 (606)
T 3vq2_A 565 KFLQW 569 (606)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 65543
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.1e-51 Score=484.30 Aligned_cols=502 Identities=18% Similarity=0.268 Sum_probs=370.2
Q ss_pred CcccccccCccCCCCCCCCCcc-cCCCCcccCCCCCCCCCccc---cceEecCCCCcEEEEECCCCCCcccCCCCCCccC
Q 048289 1 MLLQFKQLFSFETRQPSGCGRL-QSDSYSKMISWKEEKDCCSW---DGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFS 76 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~-~~~~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~ 76 (920)
||.+||.++..+. |- ..+++...++|..+++||.| .||+|+.. ++|++|+|+++.+.|.+|+ ++++
T Consensus 34 aL~~~~~~~~~~~-------w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~ 103 (636)
T 4eco_A 34 ALKEIWDALNGKN-------WSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQ 103 (636)
T ss_dssp HHHHHHHHTTGGG-------CCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGG
T ss_pred HHHHHHHHcCCCC-------cccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhc
Confidence 5777887776542 22 33456677899988999999 99999865 8999999999999999998 8999
Q ss_pred CCCCCEEECCCCCCCCC-----------CCCCcCCCCCCCCEEeCCCCCCcccCCccccC-CCCCCEEEcCCCCCCCCCC
Q 048289 77 LPHLQILNLAFNDFNYS-----------YISPGFTRFPNLAHLNLSVSSFSGQIPAEISH-LSKLVSLDLSGNSQLGLDT 144 (920)
Q Consensus 77 l~~L~~L~Ls~~~~~~~-----------~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~Ls~n~~~~~~~ 144 (920)
+++|++|+|++|.+... .+|... +..|+ ++++++.+.+..|..+.. +..+..+++....+..
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~--- 177 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK--- 177 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC---
T ss_pred CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc---
Confidence 99999999999975211 133222 45566 777777777766666552 1222333333221111
Q ss_pred chHHHHHhcCCCCCEEEcC--CCCCCCCcchhccCCCCCCEEEccCCcCCCC-----------------CCcccC--CCC
Q 048289 145 PVLKALVQNLNELQELVLN--SVDMSYEVPSFLTNLSSLTSLDLGNCGLQGS-----------------IPENIF--RLP 203 (920)
Q Consensus 145 ~~l~~~~~~l~~L~~L~L~--~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~l~--~l~ 203 (920)
.....++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|+.++ +++
T Consensus 178 -------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 178 -------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp -------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred -------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC
Confidence 011223333333 456777 788899999999999999998875 888888 899
Q ss_pred CCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCc-Ccc-cccccccCC------CCCCEEeCcCCcCCccCcc--ccc
Q 048289 204 NLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCN-FMG-SIPASLGNL------SQLTYLDLSYNNFSGHIPS--TLS 272 (920)
Q Consensus 204 ~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~ 272 (920)
+|++|++++| .+.+.+| .++.+++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++
T Consensus 250 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 250 DLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 9999999998 6677777 78889999999999998 888 788888776 89999999999998 7787 899
Q ss_pred CCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCc-CceeeccCccccccCCccccCCC--CC
Q 048289 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHS-LVTIYLSYNSLNGTIPSGLFTSP--LL 349 (920)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L 349 (920)
.+++|++|++++|.++|.+| .+..+++|++|++++|++. .+|..+..+++ |++|++++|.++ .+|..+...+ +|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 99999999999999998888 8888999999999999988 67778888888 999999999988 7888777654 89
Q ss_pred CEEEccCCCCCCCchhhhh-------cCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCC-----
Q 048289 350 ESIDLRNNQLTGSISNSIS-------ELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN----- 417 (920)
Q Consensus 350 ~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----- 417 (920)
++|++++|.+++..|..+. .+++|++|++++|.++ .++...+..+++|++|++++|.++........
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 9999999999988888887 7788999999999988 67777788889999999999888733211111
Q ss_pred -CCCCcCceEeeeccCCcCCchhhh--cccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccc
Q 048289 418 -SSFPYLSMLSLSSCNISEFPDFLR--TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLR 494 (920)
Q Consensus 418 -~~~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~ 494 (920)
..+++|++|++++|.++.+|..+. .+++|+.|++++|++++ +|..+. .+++|++|++++|+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~l~~L~~L~Ls~N~------------- 547 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL--NSSTLKGFGIRNQR------------- 547 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--GCSSCCEEECCSCB-------------
T ss_pred ccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhh--cCCCCCEEECCCCc-------------
Confidence 012277777777777777777665 77777777777777776 666555 45555555554442
Q ss_pred eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289 495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG 573 (920)
Q Consensus 495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~ 573 (920)
++++|++.+.+|..+..+++|++|++++|++ +.+|..+. ..|+.|++++|.+..
T Consensus 548 -----------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 -----------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp -----------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred -----------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 2355667777777777788888888888887 45665544 236666666665553
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-47 Score=458.31 Aligned_cols=495 Identities=19% Similarity=0.229 Sum_probs=293.1
Q ss_pred CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCC--ccc------------cceEecCCCCcEEEEECCCCCCcc
Q 048289 1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDC--CSW------------DGVTCDMMTGHVTGLDLSCSRLHG 66 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~ 66 (920)
||++||+++.+| + | ..-..|. +.+| |.| .||+|+. .++|+.|+|+++.+.|
T Consensus 273 ALl~~k~~l~~~--~-W----------~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 273 ALKAIWEALDGK--N-W----------RYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp HHHHHHHHTTGG--G-C----------CCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred HHHHHHHHcCCC--C-C----------CcCCCcc-cccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 688999998654 1 1 1112221 2345 999 9999986 5899999999999999
Q ss_pred cCCCCCCccCCCCCCEEEC-CCCCCCCCCCCCc-----------------------------------------------
Q 048289 67 SIPSDSSLFSLPHLQILNL-AFNDFNYSYISPG----------------------------------------------- 98 (920)
Q Consensus 67 ~~~~~~~l~~l~~L~~L~L-s~~~~~~~~i~~~----------------------------------------------- 98 (920)
.+|+ +++++++|++|+| ++|.+.+. .|..
T Consensus 338 ~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 338 RVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp EECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred cCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 9998 8999999999999 77765443 1110
Q ss_pred ----CCCCCCCCEEeCCC--CCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcc
Q 048289 99 ----FTRFPNLAHLNLSV--SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172 (920)
Q Consensus 99 ----~~~l~~L~~L~Ls~--n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 172 (920)
......++.+.+.. |.+++ +|..++++++|++|+|++|.+... .++. ..+..+.+...+.+|
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~---~i~~--------~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYD---NIAV--------DWEDANSDYAKQYEN 482 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGG---GBSS--------SCSCTTSHHHHHHTT
T ss_pred cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCC---cccc--------cccccccccccccCC
Confidence 01112223333322 45554 566666666666666666644320 0000 000000011112366
Q ss_pred hhcc--CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCc-CCC-Cc-------CCCCCCCEEEccCCcCcc
Q 048289 173 SFLT--NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTS-VFP-KV-------NWSSPLRFMDLYGCNFMG 241 (920)
Q Consensus 173 ~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~-~~-------~~l~~L~~L~L~~n~~~~ 241 (920)
..++ ++++|++|++++|.+.+.+|..++++++|++|++++|..+++ .+| .+ ..+++|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 6666 777888888888777777777777777777777777732554 333 22 23346666666666666
Q ss_pred cccc--cccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCC-CCEEECcCCCCCCccccc
Q 048289 242 SIPA--SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ-LSFLDFSNNQLNGPISSS 318 (920)
Q Consensus 242 ~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~ 318 (920)
.+|. .++++++|++|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 5555 6666666666666666666 455 5666666666666666666 55555666666 666666666665 44555
Q ss_pred ccCCCc--CceeeccCccccccCCccc---c--CCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhh
Q 048289 319 VSRLHS--LVTIYLSYNSLNGTIPSGL---F--TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYM 391 (920)
Q Consensus 319 l~~l~~--L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 391 (920)
+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.++ .++...
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------------------------~lp~~~ 692 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-------------------------KFPTEL 692 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------------------------SCCHHH
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-------------------------ccCHHH
Confidence 544433 6666666666654433211 1 2234555555555554 333333
Q ss_pred hhhcCCCceEEcCCCccccCccCCC------CCCCCcCceEeeeccCCcCCchhhh--cccccceeccCCCccCCCCCch
Q 048289 392 FAELKNLLGLDLSHNSLSLSTLLPV------NSSFPYLSMLSLSSCNISEFPDFLR--TQHRLQILDLSDNQIRGGIPNW 463 (920)
Q Consensus 392 ~~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~Ls~n~l~~~~~~~ 463 (920)
+..+++|+.|++++|.++....... ...+++|++|++++|+++.+|..+. .+++|+.|++++|++.+ +|..
T Consensus 693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~ 771 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771 (876)
T ss_dssp HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence 4444444444444444431111000 1123477777777777777777776 77778888888887776 5665
Q ss_pred hhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeC
Q 048289 464 IWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543 (920)
Q Consensus 464 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 543 (920)
+. .+++|+.|++++|. ++++|++.+.+|..+.++++|+.|++
T Consensus 772 l~--~L~~L~~L~Ls~N~------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 772 PL--NSSQLKAFGIRHQR------------------------------------DAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp GG--GCTTCCEEECCCCB------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred hh--cCCCCCEEECCCCC------------------------------------CcccccccccChHHHhcCCCCCEEEC
Confidence 55 55555555555543 34556777777888888888888888
Q ss_pred CCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccc
Q 048289 544 SNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596 (920)
Q Consensus 544 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 596 (920)
++|++ +.+|..+. ..|+.|++++|++....+..+.....+..+.|.+|...
T Consensus 814 s~N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 814 GSNDI-RKVDEKLT-PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CSSCC-CBCCSCCC-SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCC-CccCHhhc-CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 88888 56666544 24666666666666555555544444444555555443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=436.97 Aligned_cols=513 Identities=21% Similarity=0.241 Sum_probs=320.0
Q ss_pred CEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccC
Q 048289 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYG 236 (920)
Q Consensus 158 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~ 236 (920)
+.++.++..++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++| .+.+..+ .+..+++|++|++++
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcC
Confidence 45666665554 3344332 46888888888887666777788888888888887 5555544 577777777777777
Q ss_pred CcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCcc
Q 048289 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPI 315 (920)
Q Consensus 237 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~ 315 (920)
|.+.+..|.+|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..|+++++|++|++++|++.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 77777666777777777777777777776555567777777777777777765 35777777777777777777777666
Q ss_pred cccccCCCcC----ceeeccCccccccCCccccCCCCCCEEEccCCCCCC-CchhhhhcCCCCCEEEccCCcCCCcchhh
Q 048289 316 SSSVSRLHSL----VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG-SISNSISELVNLIDLSLSSNNLSGNVELY 390 (920)
Q Consensus 316 ~~~l~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 390 (920)
+..++.+++| +++++++|.+.+..|..+... +|++|++++|.... ..+..+..++.++...+....+...
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---- 240 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---- 240 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc----
Confidence 6666666666 667777777665444444333 56666666664321 2334455555555444432221100
Q ss_pred hhhhcCCCceEEcCCCccccCccCCCCCCCC--cCceEeeecc-CCc-CCchhhhcccccceeccCCCccCCCCCchhhc
Q 048289 391 MFAELKNLLGLDLSHNSLSLSTLLPVNSSFP--YLSMLSLSSC-NIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466 (920)
Q Consensus 391 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~L~~L~l~~~-~l~-~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 466 (920)
..++. +.... ...++ .++.+++.++ .+. .+|+.+..+++|+.|++++|.+. .+|..+.
T Consensus 241 -----~~l~~--~~~~~---------~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~- 302 (570)
T 2z63_A 241 -----GNLEK--FDKSA---------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY- 302 (570)
T ss_dssp -----SSCEE--CCTTT---------TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-
T ss_pred -----hhhhh--cchhh---------hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-
Confidence 00000 00000 00011 2334444443 222 33455555555566666555554 2444333
Q ss_pred cCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCC
Q 048289 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNN 546 (920)
Q Consensus 467 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 546 (920)
.. +|++|++++|.++.++... +++|+.|++++|.+.+..+. ..+++
T Consensus 303 -~~-~L~~L~l~~n~~~~l~~~~---------------------l~~L~~L~l~~n~~~~~~~~--~~~~~--------- 348 (570)
T 2z63_A 303 -NF-GWQHLELVNCKFGQFPTLK---------------------LKSLKRLTFTSNKGGNAFSE--VDLPS--------- 348 (570)
T ss_dssp -CC-CCSEEEEESCBCSSCCBCB---------------------CSSCCEEEEESCBSCCBCCC--CBCTT---------
T ss_pred -cC-CccEEeeccCcccccCccc---------------------ccccCEEeCcCCcccccccc--ccCCC---------
Confidence 22 3444444433333222222 22333333333333322222 33344
Q ss_pred cCCCcCcccccccccceeecCCCcccccC--CccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCc
Q 048289 547 SLNGMIPPCLANSSLWFLDMRMNNFHGSI--PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFP 624 (920)
Q Consensus 547 ~l~~~~p~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 624 (920)
|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+. +..+++|++|++++|++.+..|
T Consensus 349 --------------L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 349 --------------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp --------------CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT
T ss_pred --------------CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc
Confidence 444444444444332 45566777888888888888754444 7888888888888888877655
Q ss_pred -hhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCc
Q 048289 625 -AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGN 703 (920)
Q Consensus 625 -~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 703 (920)
..+.++++|++|++++|++.+..|..+ ..+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l----------------------------------------------- 444 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIF--NGL----------------------------------------------- 444 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTT--TTC-----------------------------------------------
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhh--hcC-----------------------------------------------
Confidence 457777777777777776665443322 112
Q ss_pred ceeeEEEEEccchhhhhhhcccccEEEcCCCcCC-CCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCC
Q 048289 704 EYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782 (920)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 782 (920)
+.|+.|++++|.++ +.+|..++.+++|+.|+|++|++++.+|..|+.+++|++|++++|
T Consensus 445 --------------------~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 445 --------------------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp --------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------------------CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 34556666666665 456777888889999999999999888999999999999999999
Q ss_pred cccccCcccccCCCCCCeeeccCCcccCCCCCC
Q 048289 783 KVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815 (920)
Q Consensus 783 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 815 (920)
++++.+|..|.++++|++|++++|+++|.+|..
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999988888999999999999999999988864
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-44 Score=425.60 Aligned_cols=468 Identities=18% Similarity=0.199 Sum_probs=267.5
Q ss_pred CCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC
Q 048289 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308 (920)
Q Consensus 229 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 308 (920)
|++|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+.+++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 34444444444444444455555555555555555544445555555555555555555554444455555555555555
Q ss_pred CCCCCc-ccccccCCCcCceeeccCccccccCC-ccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCc
Q 048289 309 NQLNGP-ISSSVSRLHSLVTIYLSYNSLNGTIP-SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386 (920)
Q Consensus 309 n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 386 (920)
|.+.+. .+..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++|+++.|.+. .
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~ 186 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-F 186 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-T
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-c
Confidence 555442 33445555555555555555322332 34555555555555555555555555555556666666655553 3
Q ss_pred chhhhhhhcCCCceEEcCCCccccCccC--CCCCCCCcCceEeeeccCCcC-----CchhhhcccccceeccCCCccCCC
Q 048289 387 VELYMFAELKNLLGLDLSHNSLSLSTLL--PVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRLQILDLSDNQIRGG 459 (920)
Q Consensus 387 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~~L~l~~~~l~~-----lp~~l~~~~~L~~L~Ls~n~l~~~ 459 (920)
++...+..+++|++|++++|.++..... .....+++|+.|++++|.++. ++..+..+++|+.+++++|.+.+.
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence 3333444556666666666665543211 122345666777776665542 223334445555555555554421
Q ss_pred CCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceeccc-----CcccccC
Q 048289 460 IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE-----IPLSFCN 534 (920)
Q Consensus 460 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~ 534 (920)
..- .... .......++++.|++.++.+... ++..+..
T Consensus 267 ~~~--------------------------~~~~------------~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 267 GDF--------------------------NPSE------------SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp SCC--------------------------CCCT------------TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred ccc--------------------------cccc------------hhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 100 0000 00001122334444444333211 1111122
Q ss_pred CCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccc-cCCCcccEEEccCCccccccC---ccccCCCCCc
Q 048289 535 MSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF-SKGSRLTILNLNDNQLEGSVP---LSLVNCSFLE 610 (920)
Q Consensus 535 l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~ 610 (920)
..+ |+.|++++|.+. .+|..+ ..+++|++|++++|++++..| ..+..+++|+
T Consensus 309 ~~~-----------------------L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 309 LEK-----------------------VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp STT-----------------------CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccc-----------------------ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 233 555555555554 333333 456667777777777666543 2356667777
Q ss_pred EEECCCCcccccCc--hhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCC
Q 048289 611 VLDVGNNRINGTFP--AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGN 688 (920)
Q Consensus 611 ~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~ 688 (920)
+|++++|++++..+ ..+..+++|++|++++|+++ .+|..+ ..+++|++|++++|++++ +|...
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~~~~L~~L~Ls~N~l~~-l~~~~----------- 429 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--QWPEKMRFLNLSSTGIRV-VKTCI----------- 429 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC--CCCTTCCEEECTTSCCSC-CCTTS-----------
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh--cccccccEEECCCCCccc-ccchh-----------
Confidence 77777777765432 34666777777777777776 344433 346677788888877763 23111
Q ss_pred CCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCccc
Q 048289 689 NNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSL 768 (920)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 768 (920)
++.|++|||++|++++.+ +.+++|++|+|++|+++ .+|. .
T Consensus 430 ----------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 430 ----------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp ----------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred ----------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 245788999999998753 57889999999999998 5676 5
Q ss_pred ccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCC
Q 048289 769 ENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 769 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 814 (920)
+.+++|++|||++|++++.+|..++++++|++|++++|++.|.+|.
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 7789999999999999999998899999999999999999988874
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=422.72 Aligned_cols=494 Identities=23% Similarity=0.246 Sum_probs=288.9
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCC
Q 048289 78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL 157 (920)
Q Consensus 78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L 157 (920)
+++++|+|++|.++.. .+..|..+++|++|+|++|.+++..|..++++++|++|++++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~------------------- 87 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------------------- 87 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------------
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-------------------
Confidence 3566666666666542 33456666666666666666665555555556666666655553
Q ss_pred CEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCC
Q 048289 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGC 237 (920)
Q Consensus 158 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 237 (920)
+++..+..|.++++|++|++++|.+.+..+..++.+++|++|++++| .+...
T Consensus 88 ---------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~------------------ 139 (570)
T 2z63_A 88 ---------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSF------------------ 139 (570)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCC------------------
T ss_pred ---------CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-cccee------------------
Confidence 33344556677777777777777776444445666666666666666 33321
Q ss_pred cCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCC----CEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL----RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313 (920)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (920)
.+|..++++++|++|++++|.+++..+..++.+++| +.|++++|.+.+..|..+... +|+.|++++|....
T Consensus 140 ----~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 140 ----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214 (570)
T ss_dssp ----CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT
T ss_pred ----cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc
Confidence 234444444444444444444444444444444444 444444444444444433332 44444444442221
Q ss_pred -cccccccCCCcCceeeccCcccccc-----C-CccccCCC--CCCEEEccCC-CCCCCchhhhhcCCCCCEEEccCCcC
Q 048289 314 -PISSSVSRLHSLVTIYLSYNSLNGT-----I-PSGLFTSP--LLESIDLRNN-QLTGSISNSISELVNLIDLSLSSNNL 383 (920)
Q Consensus 314 -~~~~~l~~l~~L~~L~L~~n~l~~~-----~-~~~l~~l~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l 383 (920)
..+..+..++.++...+....+... + ...+..++ .++.++++.+ .+.+..+..+..+++|+.|++++|.+
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 1223333344443333322211100 0 00000000 1233333333 23333333333334444444433333
Q ss_pred CCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCch
Q 048289 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNW 463 (920)
Q Consensus 384 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~ 463 (920)
. .. ......+ +|++|++++|.+..+|. ..+++|+.|++++|.+.+..+.
T Consensus 295 ~-------------------------~l--~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 295 E-------------------------RV--KDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp C-------------------------SC--CBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred h-------------------------hh--hhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-
Confidence 2 11 1111222 45555555555554444 2445555555555555443332
Q ss_pred hhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeC
Q 048289 464 IWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543 (920)
Q Consensus 464 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 543 (920)
. .+++|++|++++|.++...... .....+++|++|++++|.+.+..+. +..+++|+.|++
T Consensus 344 -~--~~~~L~~L~l~~n~l~~~~~~~----------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l 403 (570)
T 2z63_A 344 -V--DLPSLEFLDLSRNGLSFKGCCS----------------QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF 403 (570)
T ss_dssp -C--BCTTCCEEECCSSCCBEEEEEE----------------HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC
T ss_pred -c--cCCCCCEEeCcCCccCcccccc----------------ccccccCccCEEECCCCcccccccc-ccccCCCCEEEc
Confidence 1 3444555555544444321000 0001245677777777777765544 888999999999
Q ss_pred CCCcCCCcCc-ccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccc-cccCccccCCCCCcEEECCCCccc
Q 048289 544 SNNSLNGMIP-PCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE-GSVPLSLVNCSFLEVLDVGNNRIN 620 (920)
Q Consensus 544 s~n~l~~~~p-~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~ 620 (920)
++|.+.+..| ..+...+ |+.|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|+++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 9999887766 4555666 999999999999989999999999999999999998 678999999999999999999999
Q ss_pred ccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHH
Q 048289 621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRY 677 (920)
Q Consensus 621 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 677 (920)
+..|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++++.+|..+
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchH
Confidence 9889999999999999999999998766554 568899999999999999988644
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-43 Score=416.21 Aligned_cols=492 Identities=23% Similarity=0.271 Sum_probs=300.4
Q ss_pred CccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCccc
Q 048289 39 CCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ 118 (920)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~ 118 (920)
.|.|.|+ |+. +++.+. .+|. .+. ++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 5999998 863 345554 5565 333 7899999999998864 567799999999999999999988
Q ss_pred CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCC-CcchhccCCCCCCEEEccCCcCCCCCC-
Q 048289 119 IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY-EVPSFLTNLSSLTSLDLGNCGLQGSIP- 196 (920)
Q Consensus 119 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~- 196 (920)
.|..++++++|++|++++|++... .+..+.++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+|
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSC----CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred ChhhccccccCCEEECCCCccCcc----CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 888899999999999999976542 23345667777777777776665 244566666677777776666333333
Q ss_pred cccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccC--c-cccc
Q 048289 197 ENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI--P-STLS 272 (920)
Q Consensus 197 ~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~ 272 (920)
..+..+++|++|++++| .+.+..+ .++.+++|++|++++|.+.......+..+++|++|++++|.+++.. | ....
T Consensus 142 ~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 220 (549)
T 2z81_A 142 IDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220 (549)
T ss_dssp TTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred hhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhh
Confidence 45666666666666666 4444444 5566666666666666554322222344566666666666665431 1 1123
Q ss_pred CCCCCCEEEccCCcCcccchh----hhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCC
Q 048289 273 NLQQLRHLDLSNNKFTGQIPC----IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348 (920)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 348 (920)
.+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+...... .....+..+++
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~ 282 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGK 282 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTT
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc------------------cchhhhhhhcc
Confidence 355666666666665543332 23345556666666555443210000 00111223344
Q ss_pred CCEEEccCCCCCCC-----chhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCcc--CCCCCCCC
Q 048289 349 LESIDLRNNQLTGS-----ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTL--LPVNSSFP 421 (920)
Q Consensus 349 L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~ 421 (920)
|+.|++.++.+... .+..+...++|+.|++++|.+. .++...+..+++|++|++++|.++.... ......++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 44555444443321 1122233455666666666554 4444444556666666666665543211 11233556
Q ss_pred cCceEeeeccCCcCCc---hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEec
Q 048289 422 YLSMLSLSSCNISEFP---DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDL 498 (920)
Q Consensus 422 ~L~~L~l~~~~l~~lp---~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L 498 (920)
+|++|++++|.++.++ ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.++.+...
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--~~~~L~~L~Ls~N~l~~l~~~---------- 428 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ--WPEKMRFLNLSSTGIRVVKTC---------- 428 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC--CCTTCCEEECTTSCCSCCCTT----------
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc--ccccccEEECCCCCcccccch----------
Confidence 6777777777776654 34677778888888888777 4555544 455666666666665544332
Q ss_pred ccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCcc
Q 048289 499 RSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQT 578 (920)
Q Consensus 499 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~ 578 (920)
.+++|++|++++|++++.. ..+++|++|++++|+++ .+|.......|+.|++++|++++..|..
T Consensus 429 -----------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 429 -----------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp -----------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTG
T ss_pred -----------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHH
Confidence 2345666666666665532 45677888888888887 4555322223888888888888888888
Q ss_pred ccCCCcccEEEccCCccccccC
Q 048289 579 FSKGSRLTILNLNDNQLEGSVP 600 (920)
Q Consensus 579 ~~~l~~L~~L~L~~N~l~~~~p 600 (920)
+..+++|+.|++++|++++..|
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 8888999999999998877655
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-44 Score=425.11 Aligned_cols=444 Identities=20% Similarity=0.284 Sum_probs=259.9
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCC------c------cCcccccCCCCCCEEEccCCcCcccchhh
Q 048289 227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFS------G------HIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294 (920)
Q Consensus 227 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 294 (920)
.+++.|+|+++.+.|.+|.+++++++|++|++++|.+. + .+|... +..|+ ++++++.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 35677777777888888888888888888888887651 1 122222 23344 555555555555544
Q ss_pred hhcC-------------------CCCCEEECc--CCCCCCcccccccCCCcCceeeccCcccccc---------------
Q 048289 295 FANL-------------------TQLSFLDFS--NNQLNGPISSSVSRLHSLVTIYLSYNSLNGT--------------- 338 (920)
Q Consensus 295 l~~l-------------------~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--------------- 338 (920)
+..+ ..++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 3310 011111111 345555 566666666666666666666653
Q ss_pred --CCcccc--CCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCc-CCC-cchhhhhhhcCCCceEEcCCCccccCc
Q 048289 339 --IPSGLF--TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN-LSG-NVELYMFAELKNLLGLDLSHNSLSLST 412 (920)
Q Consensus 339 --~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 412 (920)
+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .++.. +..+.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~---------------- 299 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALA---------------- 299 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHH----------------
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhh----------------
Confidence 666666 66666666666666666666666666666666666665 554 33221 11110
Q ss_pred cCCCCCCCCcCceEeeeccCCcCCch--hhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCC
Q 048289 413 LLPVNSSFPYLSMLSLSSCNISEFPD--FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW 490 (920)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 490 (920)
....+++|++|++++|.++.+|. .+..+++|+.|++++|++.|.+| .+. .
T Consensus 300 ---~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~---------------------- 351 (636)
T 4eco_A 300 ---DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--S---------------------- 351 (636)
T ss_dssp ---HSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--E----------------------
T ss_pred ---ccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC--C----------------------
Confidence 00011222222222333333444 44444444444444444443333 211 1
Q ss_pred cccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCC-cCeEeCCCCcCCCcCcccccccccceeecCCC
Q 048289 491 KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSS-IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMN 569 (920)
Q Consensus 491 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n 569 (920)
+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+....
T Consensus 352 --------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~--------- 400 (636)
T 4eco_A 352 --------------------EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS--------- 400 (636)
T ss_dssp --------------------EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC---------
T ss_pred --------------------CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc---------
Confidence 124455555555555 55666666666 777777766666 4454443321
Q ss_pred cccccCCccccCCCcccEEEccCCccccccCcccc-------CCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCce
Q 048289 570 NFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLV-------NCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642 (920)
Q Consensus 570 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 642 (920)
+++|+.|++++|++++..|..+. .+++|++|++++|+++...+..+..+++|++|++++|+
T Consensus 401 ------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 401 ------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp ------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred ------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 12455555555555554444444 44555555555555553333334445555555555555
Q ss_pred eecccCCCccc------CCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccch
Q 048289 643 FHGPITYSVTR------FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVN 716 (920)
Q Consensus 643 l~~~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (920)
++ .+|..... ..+++|+.|++++|+++ .+|..++.
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------- 509 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------------------------------- 509 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------------------
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------------------
Confidence 55 33332211 11237888888888887 56644310
Q ss_pred hhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEec------cCccccCCcCcccccccCCccccCCCCcccccCcc
Q 048289 717 MEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNF------SHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW 790 (920)
Q Consensus 717 ~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 790 (920)
..++.|+.|+|++|++++ +|..++.+++|+.|+| ++|++.+.+|..++++++|++|||++|++ +.+|.
T Consensus 510 ----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 510 ----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp ----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred ----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 014567888999999887 8888888999999988 56888999999999999999999999999 78888
Q ss_pred cccCCCCCCeeeccCCccc
Q 048289 791 QLTSLNFLQVLNLSQNQLV 809 (920)
Q Consensus 791 ~l~~l~~L~~L~ls~N~l~ 809 (920)
.+. ++|++||+++|++.
T Consensus 584 ~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCC--TTCCEEECCSCTTC
T ss_pred hHh--CcCCEEECcCCCCc
Confidence 766 79999999999776
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-41 Score=406.65 Aligned_cols=526 Identities=23% Similarity=0.252 Sum_probs=319.4
Q ss_pred EEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCC
Q 048289 159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGC 237 (920)
Q Consensus 159 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n 237 (920)
+.+.++-+++ .+|..+. +++++|||++|.+++..+..|.++++|++|+|++| .+.+..+ .|..+++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC
Confidence 4444444444 3343332 35677777777776555566777777777777776 4554444 4666666666666666
Q ss_pred cCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCccc
Q 048289 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPIS 316 (920)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~ 316 (920)
++++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 6665555556666666666666666665555556666666666666666653 245555666666666666666665555
Q ss_pred ccccCCCcCc----eeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhh
Q 048289 317 SSVSRLHSLV----TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392 (920)
Q Consensus 317 ~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 392 (920)
..+..+.+++ .++++.|.+.. ++........++ .+++.+|..........+
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~------------------------~l~l~~n~~~~~~~~~~~ 245 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH------------------------KLTLRNNFDSLNVMKTCI 245 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEE------------------------EEEEESCCSSHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhcccCcccc-cCcccccchhhh------------------------hhhhhcccccccccchhh
Confidence 5544433322 34444444432 222222223334 444444433333333344
Q ss_pred hhcCCCceEEcCCCccccCcc-----CCCCCCCCcCceEeeeccCCc----CCchhhhcccccceeccCCCccCCCCCch
Q 048289 393 AELKNLLGLDLSHNSLSLSTL-----LPVNSSFPYLSMLSLSSCNIS----EFPDFLRTQHRLQILDLSDNQIRGGIPNW 463 (920)
Q Consensus 393 ~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~L~~L~l~~~~l~----~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~ 463 (920)
..+..++...+..+....... .........+....+..+... .++..+.....++.+++.++.+
T Consensus 246 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------- 318 (635)
T 4g8a_A 246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI------- 318 (635)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-------
T ss_pred cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-------
Confidence 444444443332221111000 001111222333333222111 1222333334444444444433
Q ss_pred hhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEe
Q 048289 464 IWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542 (920)
Q Consensus 464 ~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 542 (920)
..+.. ....+++.|++.+|.+.+..+.....++.+++.+|.+.... ....+++|+.++
T Consensus 319 -------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ 377 (635)
T 4g8a_A 319 -------------------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLD 377 (635)
T ss_dssp -------------------EECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEE
T ss_pred -------------------ccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc--ccccccccccch
Confidence 33322 12234555555555555444444556666666666554322 344677788888
Q ss_pred CCCCcCCCc--Ccccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCCc
Q 048289 543 LSNNSLNGM--IPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNNR 618 (920)
Q Consensus 543 Ls~n~l~~~--~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~ 618 (920)
+++|.+... .+....... |+.+++..|.+.. .+..+..+++|+.+++.+|......+ ..+..+++++.++++.|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 888777532 333333333 8888888887764 34567788999999999888766554 567889999999999999
Q ss_pred ccccCchhhcCCCCCCEEEccCceeecc-cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcc
Q 048289 619 INGTFPAWLGALSELQVLILRSNRFHGP-ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697 (920)
Q Consensus 619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 697 (920)
+.+..+..+..+++|++|++++|++... .|..+ .
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~---------------------------~------------------ 491 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---------------------------T------------------ 491 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---------------------------T------------------
T ss_pred cccccccccccchhhhhhhhhhcccccccCchhh---------------------------h------------------
Confidence 9988888888888888888888765432 22111 1
Q ss_pred eeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777 (920)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 777 (920)
.++.|++|||++|++++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|
T Consensus 492 ------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 492 ------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp ------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred ------------------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 13456788888888888888889999999999999999999999999999999999
Q ss_pred cCCCCcccccCcccccCC-CCCCeeeccCCcccCC
Q 048289 778 DLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQLVGP 811 (920)
Q Consensus 778 ~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ 811 (920)
||++|+|++.+|..|..+ ++|++|++++|++...
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999988 6899999999998753
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-43 Score=406.33 Aligned_cols=452 Identities=21% Similarity=0.209 Sum_probs=249.5
Q ss_pred EEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCcc
Q 048289 255 YLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS 334 (920)
Q Consensus 255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 334 (920)
+|++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4455555554 2343333 455555555555554444555555555555555555555555555555555555555555
Q ss_pred ccccCCccccCCCCCCEEEccCCCCCC-CchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCC--ceEEcCCCccccC
Q 048289 335 LNGTIPSGLFTSPLLESIDLRNNQLTG-SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL--LGLDLSHNSLSLS 411 (920)
Q Consensus 335 l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~Ls~n~l~~~ 411 (920)
++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+...
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccc
Confidence 55 34443 55666666666666665 345666666777777777666653 223444444 4444444443100
Q ss_pred ccCCCCCCCCcCceEeeeccCCcCCchhhhccc-ccceeccCCCccCCCCCchhhccCCCCCcEEECCCCc-------Cc
Q 048289 412 TLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH-RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF-------LT 483 (920)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------l~ 483 (920)
...|..+..+. ....+++++|.+.+.++..... .+++|+.+++++|. +.
T Consensus 154 ----------------------~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 154 ----------------------KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK-TVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp ----------------------SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT-TCSEEEECCEEECCSTTTTHHHH
T ss_pred ----------------------ccccccccccccceEEEEeccCcchhhhhhhhhh-cccceeeccccccccccccceee
Confidence 12344444433 3445677888877666554321 56666666666664 21
Q ss_pred Cc--cCCCCcccceEecccCcCCCCCCC------CCCCCceEEecCceecccCcccc-----cCCCCcCeEeCCCCcCCC
Q 048289 484 GI--ELLPWKNLRYLDLRSNSLKGSIPF------LPPSLNFISVSNNKLSGEIPLSF-----CNMSSIFYVNLSNNSLNG 550 (920)
Q Consensus 484 ~~--~~~~~~~L~~L~L~~n~l~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~ 550 (920)
+. ....+++|+.|++++|.+.+..+. ..++|++|++++|++++.+|..+ ..++.|+.+++++|.+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 11 112334455555555544321110 01245555555555554444444 4444444445444444
Q ss_pred cCcccccccccceeecCCCcccccCCccccCC---CcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh
Q 048289 551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKG---SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL 627 (920)
Q Consensus 551 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 627 (920)
.+|. ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..+
T Consensus 289 ~~p~----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 289 GFPQ----------------------SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp CSCT----------------------HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred ecch----------------------hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 2221 222221 34555555555543211 11345555555555555555555555
Q ss_pred cCCCCCCEEEccCceeec--ccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289 628 GALSELQVLILRSNRFHG--PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY 705 (920)
Q Consensus 628 ~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 705 (920)
..+++|++|++++|++.+ .+|..+ ..+++|+.|++++|++++.+|...+.
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~-------------------------- 396 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKGDCS-------------------------- 396 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGCSCC--------------------------
T ss_pred ccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCcCCcccccchhc--------------------------
Confidence 555555555555555553 222211 34556666666666666545532111
Q ss_pred eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289 706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785 (920)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 785 (920)
.++.|+.|++++|.+++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 397 ----------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 397 ----------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp ----------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred ----------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 134567788888888777776654 68888888888888 67777778888888888888888
Q ss_pred ccCcc-cccCCCCCCeeeccCCcccCCCC
Q 048289 786 GEIPW-QLTSLNFLQVLNLSQNQLVGPIP 813 (920)
Q Consensus 786 g~ip~-~l~~l~~L~~L~ls~N~l~g~iP 813 (920)
+ +|. .+..+++|++|++++|++++..|
T Consensus 458 ~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 458 S-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 4 554 48888889999999998887655
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=403.68 Aligned_cols=456 Identities=21% Similarity=0.197 Sum_probs=262.3
Q ss_pred CEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCC
Q 048289 206 QNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285 (920)
Q Consensus 206 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 285 (920)
++|++++| .++.....+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+.+++|++|++++|
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35566665 3443222232 55555555555555555555555555555555555555555555555555555555555
Q ss_pred cCcccchhhhhcCCCCCEEECcCCCCCC-cccccccCCCcCceeeccCccccccCCccccCCCCC--CEEEccCCCC--C
Q 048289 286 KFTGQIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL--ESIDLRNNQL--T 360 (920)
Q Consensus 286 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~ 360 (920)
.++ .+|.. .+++|++|++++|++++ .+|..++.+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 555 33333 45555555555555554 244555555555555555555543 223334444 5555555555 4
Q ss_pred CCchhhhhcCC-CCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccC-------
Q 048289 361 GSISNSISELV-NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN------- 432 (920)
Q Consensus 361 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~------- 432 (920)
+..|..+..+. +...+++++|.+.+.+....+. .+++|+.+++++|.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~-------------------------~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK-------------------------TVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT-------------------------TCSEEEECCEEECCSTTTTHH
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhh-------------------------cccceeeccccccccccccce
Confidence 44444443333 1223344444444333333333 34444444444443
Q ss_pred CcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---
Q 048289 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF--- 509 (920)
Q Consensus 433 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--- 509 (920)
+....+.+..+++|+.|++++|.+.+..+..+.. ....++|++|++++|++.+.+|.
T Consensus 209 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------------------~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--------------------LVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp HHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH--------------------HHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred eecchhhhccccchhhccccccccCHHHHHHHHH--------------------HhhhCcccEEEeecccccCccccchh
Confidence 1111123444455555555554443322111100 00012444555555554443332
Q ss_pred -----CCCCCceEEecCceecccCc-ccccCC---CCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCcccc
Q 048289 510 -----LPPSLNFISVSNNKLSGEIP-LSFCNM---SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFS 580 (920)
Q Consensus 510 -----~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~ 580 (920)
.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+.
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------------~~~ 321 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-------------------------CPS 321 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------------------CCS
T ss_pred hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-------------------------chh
Confidence 245788899999998 455 444443 56778888777765321 013
Q ss_pred CCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccc--cCchhhcCCCCCCEEEccCceeecccCCCcccCCCCC
Q 048289 581 KGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING--TFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK 658 (920)
Q Consensus 581 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 658 (920)
.+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|... ...+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCcc
Confidence 45566666666666666666666666777777777777665 445666677777777777777766444331 134677
Q ss_pred CcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCC
Q 048289 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG 738 (920)
Q Consensus 659 L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~ 738 (920)
|+.|++++|++++.+|... .+.|+.||+++|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l---------------------------------------------~~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL---------------------------------------------PPRIKVLDLHSNKIK- 434 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC---------------------------------------------CTTCCEEECCSSCCC-
T ss_pred CCEEECcCCCCCcchhhhh---------------------------------------------cccCCEEECCCCccc-
Confidence 8888888888876555321 145789999999998
Q ss_pred CchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289 739 RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789 (920)
Q Consensus 739 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 789 (920)
.+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 788888899999999999999996444459999999999999999998765
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-42 Score=415.02 Aligned_cols=225 Identities=18% Similarity=0.196 Sum_probs=119.6
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCEEeC-cCCcCCccCccccc---------------------------------
Q 048289 227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDL-SYNNFSGHIPSTLS--------------------------------- 272 (920)
Q Consensus 227 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~l~--------------------------------- 272 (920)
.++..|+|+++.+.|.+|.+++++++|++|+| ++|.+.|..|....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46777888888888888888888888888888 77766554221100
Q ss_pred ------------------CCCCCCEEEcc--CCcCcccchhhhhcCCCCCEEECcCCCCCCc-ccccccCCCcCceeecc
Q 048289 273 ------------------NLQQLRHLDLS--NNKFTGQIPCIFANLTQLSFLDFSNNQLNGP-ISSSVSRLHSLVTIYLS 331 (920)
Q Consensus 273 ------------------~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~ 331 (920)
....++.+.+. .|.+++ +|..++++++|++|++++|++++. ++..+ +..+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~--------~~~s 473 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW--------EDAN 473 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--------SCTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc--------cccc
Confidence 01111222222 134443 444455555555555555555441 00000 0000
Q ss_pred CccccccCCcccc--CCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCc-CCC-cchhhhhh-------hcCCCce
Q 048289 332 YNSLNGTIPSGLF--TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN-LSG-NVELYMFA-------ELKNLLG 400 (920)
Q Consensus 332 ~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------~l~~L~~ 400 (920)
.|.+.+.+|..+. .+++|++|+|++|.+.+.+|..+..+++|+.|++++|+ +++ .++. .+. .+++|+.
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQI 552 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccE
Confidence 0000012555554 55666666666666555556556666666666666665 554 2322 122 2336666
Q ss_pred EEcCCCccccCccCC--CCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhh
Q 048289 401 LDLSHNSLSLSTLLP--VNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIW 465 (920)
Q Consensus 401 L~Ls~n~l~~~~~~~--~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 465 (920)
|++++|.++ .+.. ....+++|++|++++|.++.+| .+..+++|+.|++++|.+. .+|..+.
T Consensus 553 L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~ 615 (876)
T 4ecn_A 553 FYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC 615 (876)
T ss_dssp EECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSC
T ss_pred EEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHh
Confidence 666666655 2222 2445666666666666666666 6677777777777777776 5555444
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-40 Score=395.53 Aligned_cols=562 Identities=22% Similarity=0.197 Sum_probs=331.0
Q ss_pred cccCCCCCCCCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCE
Q 048289 28 SKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAH 107 (920)
Q Consensus 28 ~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~ 107 (920)
..+++|+.+. +..|+...|.... +..+-++.++. .+|. .+. +++++|||++|.++.. .+.+|.++++|++
T Consensus 11 ~~~~~~~~~~-p~~~~~c~~~~~~---~~~~c~~~~l~-~vP~--~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~ 80 (635)
T 4g8a_A 11 DKLAAANSSI-PESWEPCVEVVPN---ITYQCMELNFY-KIPD--NLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQV 80 (635)
T ss_dssp ---------------CCSEEEETT---TEEECTTSCCS-SCCS--SSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred chhhcccCCC-CCCCCCccccCCC---CEEECCCCCcC-ccCC--CCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCE
Confidence 3677886543 3345543333211 12355555555 4554 332 4688888888888763 3456888888888
Q ss_pred EeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEcc
Q 048289 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLG 187 (920)
Q Consensus 108 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls 187 (920)
|+|++|.+++..|.+|.++++|++|+|++|++.. ..+..|.++++|++|+++
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~----------------------------l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----------------------------LALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----------------------------ECGGGGTTCTTCCEEECT
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC----------------------------CCHHHhcCCCCCCEEECC
Confidence 8888888886666678888888888888885543 334456666666666666
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccCCCCCCc-CCC-CcCCCCCCCEEEccCCcCcccccccccCCCC----CCEEeCcCC
Q 048289 188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTS-VFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQ----LTYLDLSYN 261 (920)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~L~~n 261 (920)
+|.+++..+..|+++++|++|++++| .+.. ..+ .++.+++|++|++++|.+.+..+..+..+.+ ...++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 66666544455666666666666666 3322 233 4455666666666666666665665554433 336777777
Q ss_pred cCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCC------CCcccccccCCCcCceeeccCcc
Q 048289 262 NFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQL------NGPISSSVSRLHSLVTIYLSYNS 334 (920)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~L~~L~L~~n~ 334 (920)
.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+.. .......+..+..+....+..+.
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 7765444333 33456667777765542 2344566667766655543322 11222233333444444433322
Q ss_pred ccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccC
Q 048289 335 LNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414 (920)
Q Consensus 335 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 414 (920)
..... ......+....+++.+.+..+.+... ..+.....++.|++.+|.+....
T Consensus 291 ~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-- 344 (635)
T 4g8a_A 291 LDYYL---------------------DGIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQFP-- 344 (635)
T ss_dssp CCSCE---------------------EECTTTTGGGTTCSEEEEESCEEEEC---GGGGSCCCCSEEEEESCEESSCC--
T ss_pred hcccc---------------------cchhhhhhhhcccccccccccccccc---cccccchhhhhhhcccccccCcC--
Confidence 21100 01111233334444444444433211 11223334444444444432211
Q ss_pred CCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCC--CCchhhccCCCCCcEEECCCCcCcCccCCCCcc
Q 048289 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGG--IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKN 492 (920)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 492 (920)
...++.|+.+.+..+.....+. ...+++|+.+++++|.+... .+.... ...+|+.+++..+.+......
T Consensus 345 --~~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~---- 415 (635)
T 4g8a_A 345 --TLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSN---- 415 (635)
T ss_dssp --CCBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSC----
T ss_pred --cccchhhhhcccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccccccccccc----
Confidence 1123445555555554433221 22345555555555554321 122222 334444444444433222110
Q ss_pred cceEecccCcCCCCCCCCCCCCceEEecCceecccCc-ccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN 570 (920)
Q Consensus 493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~ 570 (920)
....++|+.++++.|......+ ..+..+++++.++++.|.+.+..+..+...+ ++.|++++|+
T Consensus 416 ---------------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 416 ---------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp ---------------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred ---------------ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 1124566667776666554443 4577788888888888888887777777766 8889998887
Q ss_pred c-cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289 571 F-HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649 (920)
Q Consensus 571 l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 649 (920)
+ .+..|..|..+++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|.
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 4 446788899999999999999999999999999999999999999999998899999999999999999999988877
Q ss_pred CcccCCC-CCCcEEEccCCcCcCCCchHHHhhh
Q 048289 650 SVTRFPF-PKLRILDLSNNEFTGVLPTRYFQNF 681 (920)
Q Consensus 650 ~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l 681 (920)
.+ ..+ ++|+.|++++|++.+.....+|..|
T Consensus 561 ~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 561 EL--QHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp CT--TCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred HH--HhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 66 334 6899999999999998876666544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-40 Score=388.11 Aligned_cols=226 Identities=20% Similarity=0.268 Sum_probs=137.1
Q ss_pred CCceEEecCceecccCcccc-----cCCCCcCeEeCCCCcCCCcCcc-ccc----ccccceeecCCCcccccCCccccCC
Q 048289 513 SLNFISVSNNKLSGEIPLSF-----CNMSSIFYVNLSNNSLNGMIPP-CLA----NSSLWFLDMRMNNFHGSIPQTFSKG 582 (920)
Q Consensus 513 ~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p~-~~~----~~~L~~L~L~~n~l~~~~~~~~~~l 582 (920)
+|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+|. .+. ...|+.|++++|.+.... ....+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 66777777777777777666 5666666666666665 3342 111 122666666666554221 11345
Q ss_pred CcccEEEccCCccccccCccccCCCCCcEEECCCCccccc--CchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCc
Q 048289 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT--FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLR 660 (920)
Q Consensus 583 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 660 (920)
++|++|++++|++++..|..+.++++|++|++++|++++. +|..+.+++ +|+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~--------------------------~L~ 406 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS--------------------------SLE 406 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT--------------------------TCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC--------------------------CCC
Confidence 5555566666555555555555555555555555555542 233444444 455
Q ss_pred EEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCc
Q 048289 661 ILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRI 740 (920)
Q Consensus 661 ~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~i 740 (920)
.|++++|++++.+|...+.. ++.|+.|++++|.+++.+
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~------------------------------------------l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAW------------------------------------------AESILVLNLSSNMLTGSV 444 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCC------------------------------------------CTTCCEEECCSSCCCGGG
T ss_pred EEECCCCcCCCccChhhhcC------------------------------------------cccCCEEECCCCCCCcch
Confidence 55555555554444321111 244567777777777666
Q ss_pred hhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCccc-ccCCCCCCeeeccCCcccCCCCC
Q 048289 741 PEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 741 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 814 (920)
|..+. ++|+.|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|++|++++|++.+..|.
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 65544 67888888888887 566666688888888888888884 4444 78888888888888888876663
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-39 Score=378.89 Aligned_cols=464 Identities=22% Similarity=0.258 Sum_probs=321.5
Q ss_pred CCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 048289 178 LSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL 256 (920)
Q Consensus 178 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 256 (920)
+...++++++++.++ .+|..+. ++|++|++++| .+.+..+ .+..+++|++|++++|.+++..|.+|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 344588899988888 4776554 78888888888 5665554 77778888888888888877777778888888888
Q ss_pred eCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCcccccccCCCcC--ceeeccCc
Q 048289 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSL--VTIYLSYN 333 (920)
Q Consensus 257 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n 333 (920)
++++|.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|++.+. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 88888877 34544 67788888888888775 3456777788888888888777653 33444444 77777777
Q ss_pred cc--cccCCccccCCC-CCCEEEccCCCCCCCchh-hhhcCCCCCEEEccCCcCCCc---chhhhhhhcCCCceEEcCCC
Q 048289 334 SL--NGTIPSGLFTSP-LLESIDLRNNQLTGSISN-SISELVNLIDLSLSSNNLSGN---VELYMFAELKNLLGLDLSHN 406 (920)
Q Consensus 334 ~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n 406 (920)
.+ .+..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|..... .....+..+++|+.++++++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 77 666666665543 111446666666554332 344556666666666642110 01123344455555554444
Q ss_pred ccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhcc---CCCCCcEEECCCCcCc
Q 048289 407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV---GKDTLNHLNLSHNFLT 483 (920)
Q Consensus 407 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~L~~L~Ls~n~l~ 483 (920)
.+.. +.+..++..+. .++|++|++++|.+.+.+|..++.. .++.|+.+++..+.+
T Consensus 260 ~l~~--------------------~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~- 317 (562)
T 3a79_B 260 ETTW--------------------KCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF- 317 (562)
T ss_dssp EECH--------------------HHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred cCcH--------------------HHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence 3321 11112222222 2367777777777777676655211 333333344444443
Q ss_pred CccCC------CCcccceEecccCcCCCCCC-CCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCc--Ccc
Q 048289 484 GIELL------PWKNLRYLDLRSNSLKGSIP-FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM--IPP 554 (920)
Q Consensus 484 ~~~~~------~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~ 554 (920)
.++.. ...+|++|++++|.+..... ..+++|++|++++|++++..|..+.++++|++|++++|++++. +|.
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 11100 11458888888888765443 5578899999999999998999999999999999999999863 345
Q ss_pred cccccc-cceeecCCCcccccCC-ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCC
Q 048289 555 CLANSS-LWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSE 632 (920)
Q Consensus 555 ~~~~~~-L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 632 (920)
.+...+ |+.|++++|++++.+| ..+..+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 666666 9999999999998455 5688999999999999999988777665 79999999999999 67777779999
Q ss_pred CCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHH
Q 048289 633 LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYF 678 (920)
Q Consensus 633 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 678 (920)
|++|++++|++++ +|.. ....+++|+.|++++|++.+.+|..++
T Consensus 475 L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 475 LQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 9999999999994 5544 235689999999999999999886655
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-37 Score=353.59 Aligned_cols=300 Identities=22% Similarity=0.247 Sum_probs=174.9
Q ss_pred CCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEE
Q 048289 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESID 353 (920)
Q Consensus 274 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 353 (920)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+.+|+.+++..|.. ..+++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46778888888887 57777788888888888888887777777777777765555554432 3457777
Q ss_pred ccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCC
Q 048289 354 LRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI 433 (920)
Q Consensus 354 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l 433 (920)
+++|.+++. |. -.++|++|++++|.+++ ++. .+++|++|++++|.++.... ..++|++|++++|.+
T Consensus 78 l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 78 LNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQL 143 (454)
T ss_dssp CTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCC
T ss_pred ecCCccccC-CC---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCC
Confidence 777777652 22 13567777777777765 321 23677777777776654321 125788888888888
Q ss_pred cCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCC
Q 048289 434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPP 512 (920)
Q Consensus 434 ~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~ 512 (920)
+.+| .+..+++|++|++++|++++ +|.. ..+|++|++++|.+++++. ..+++|++|++++|++.+ +|..++
T Consensus 144 ~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~-----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~~ 215 (454)
T 1jl5_A 144 EKLP-ELQNSSFLKIIDVDNNSLKK-LPDL-----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLPL 215 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCCT
T ss_pred CCCc-ccCCCCCCCEEECCCCcCcc-cCCC-----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCCcC
Confidence 8877 47888888888888888875 4542 3478888888888777642 345677777777777776 444456
Q ss_pred CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccC
Q 048289 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLND 592 (920)
Q Consensus 513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 592 (920)
+|++|++++|.++ .+| .+..+++|++|++++|++++ +|... ..|+.|++++|++++ +|.. .++|+.|++++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLP--PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCC--TTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccc--cccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 7777777777776 455 36777777777777777764 33321 225666666666554 2322 24555555555
Q ss_pred CccccccCccccCCCCCcEEECCCCccc
Q 048289 593 NQLEGSVPLSLVNCSFLEVLDVGNNRIN 620 (920)
Q Consensus 593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 620 (920)
|++++. |.. .++|++|++++|+++
T Consensus 287 N~l~~l-~~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 287 NIFSGL-SEL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp SCCSEE-SCC---CTTCCEEECCSSCCS
T ss_pred CccCcc-cCc---CCcCCEEECcCCcCC
Confidence 555531 110 134555555555554
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-38 Score=359.92 Aligned_cols=393 Identities=26% Similarity=0.309 Sum_probs=215.6
Q ss_pred cCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEE
Q 048289 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDL 376 (920)
Q Consensus 297 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 376 (920)
..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+.+|+.+++..|. ..++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEE
Confidence 347888899999988 6788888889999999999998888888888877777666665442 1457888
Q ss_pred EccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCcc
Q 048289 377 SLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQI 456 (920)
Q Consensus 377 ~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l 456 (920)
++++|.+++... ..++|++|++++|.++... ..+++|++|++++|.++.+|... ++|++|++++|++
T Consensus 77 ~l~~~~l~~lp~-----~~~~L~~L~l~~n~l~~lp-----~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l 143 (454)
T 1jl5_A 77 ELNNLGLSSLPE-----LPPHLESLVASCNSLTELP-----ELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQL 143 (454)
T ss_dssp ECTTSCCSCCCS-----CCTTCSEEECCSSCCSSCC-----CCCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCC
T ss_pred EecCCccccCCC-----CcCCCCEEEccCCcCCccc-----cccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCC
Confidence 888887764221 1256666666666654321 12245555555555555544321 3455555555555
Q ss_pred CCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCC
Q 048289 457 RGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536 (920)
Q Consensus 457 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 536 (920)
++ +| .+. .+ ++|++|++++|++++ +|..+++|++|++++|++++ +| .+.+++
T Consensus 144 ~~-lp-~~~--~l---------------------~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~ 195 (454)
T 1jl5_A 144 EK-LP-ELQ--NS---------------------SFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLP 195 (454)
T ss_dssp SS-CC-CCT--TC---------------------TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC-Cc-ccC--CC---------------------CCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCC
Confidence 43 33 222 34 445555555555554 33344567777777777765 44 467777
Q ss_pred CcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289 537 SIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616 (920)
Q Consensus 537 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (920)
+|++|++++|++++ +|... ..|+.|++++|.++ .+| .+..+++|+.|++++|++++ +|.. .++|++|++++
T Consensus 196 ~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 266 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRD 266 (454)
T ss_dssp TCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCS
T ss_pred CCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCC
Confidence 77777777777765 33322 24777777777777 445 36777777777777777774 4432 36777777777
Q ss_pred CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289 617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696 (920)
Q Consensus 617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 696 (920)
|++++ +|.. .++|++|++++|++++. +. ..++|+.|++++|++++. +.
T Consensus 267 N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-----~~~~L~~L~l~~N~l~~i-~~--------------------- 314 (454)
T 1jl5_A 267 NYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-----LPPNLYYLNASSNEIRSL-CD--------------------- 314 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-----CCTTCCEEECCSSCCSEE-CC---------------------
T ss_pred Ccccc-cCcc---cCcCCEEECcCCccCcc-cC-----cCCcCCEEECcCCcCCcc-cC---------------------
Confidence 77775 4433 36777777777777652 11 125677777777777641 10
Q ss_pred ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcc
Q 048289 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES 776 (920)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~ 776 (920)
.++.|+.|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|++
T Consensus 315 -------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~ 361 (454)
T 1jl5_A 315 -------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQ 361 (454)
T ss_dssp -------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred -------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccE
Confidence 01346677777777775 4543 4677777777777774 454 3567777
Q ss_pred ccCCCCcccc--cCcccccCC-------------CCCCeeeccCCcccC--CCCCCC
Q 048289 777 LDLSSNKVAG--EIPWQLTSL-------------NFLQVLNLSQNQLVG--PIPQGK 816 (920)
Q Consensus 777 L~Ls~N~l~g--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~iP~~~ 816 (920)
|++++|++++ .+|.++..+ ++|++|++++|+++| .||...
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 7777777777 677776666 789999999999998 888654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-35 Score=340.92 Aligned_cols=382 Identities=21% Similarity=0.253 Sum_probs=242.3
Q ss_pred EEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc-hhhhhcCCCCCEEECcCC
Q 048289 231 FMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI-PCIFANLTQLSFLDFSNN 309 (920)
Q Consensus 231 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 309 (920)
.++.+++.++ .+|. + .++|++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555544 3343 2 256777777777777666777777777777777777776444 456777777777777777
Q ss_pred CCCCcccccccCCCcCceeeccCccccccCCcc--ccCCCCCCEEEccCCCCCCCchhh-hhcCCCCCEEEccCCcCCCc
Q 048289 310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG--LFTSPLLESIDLRNNQLTGSISNS-ISELVNLIDLSLSSNNLSGN 386 (920)
Q Consensus 310 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~ 386 (920)
++.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 777666777777777777777777776544433 666677777777777776665554 56667777777777666543
Q ss_pred chhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchh---------hhcccccceeccCCCccC
Q 048289 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF---------LRTQHRLQILDLSDNQIR 457 (920)
Q Consensus 387 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~---------l~~~~~L~~L~Ls~n~l~ 457 (920)
.+ ..+..+ ..++|+.|++++|.+..++.. +..+++|+.|++++|++.
T Consensus 170 ~~-~~l~~l-----------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 170 CE-EDLLNF-----------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CT-TTSGGG-----------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred Ch-hhhhcc-----------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 22 222222 113344444444444433321 234456777777777766
Q ss_pred CCCCchhhcc-CCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCccccc--C
Q 048289 458 GGIPNWIWNV-GKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFC--N 534 (920)
Q Consensus 458 ~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~ 534 (920)
+..|..+... ...+++.|++++|.+.+... ..+.+....+..+. .
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------------------------GHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------------------------TCCSSCCCCTTTTGGGT
T ss_pred ccchhhhhccccccceeeEeecccccccccc--------------------------------chhhhccCccccccccc
Confidence 6555554311 12455555555554332211 00111111111121 1
Q ss_pred CCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEE
Q 048289 535 MSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD 613 (920)
Q Consensus 535 l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 613 (920)
.++|+.|++++|.+++..|..+...+ |+.|++++|++++..|..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 24566666666666666666665555 66677777777767777777788888888888888877777888888888888
Q ss_pred CCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCc
Q 048289 614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLP 674 (920)
Q Consensus 614 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 674 (920)
+++|++++..|..|..+++|++|++++|++++..+..+ ..+++|+.|++++|++++.+|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCC
Confidence 88888887778888888888888888888876444333 457888899999999988888
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-36 Score=343.40 Aligned_cols=362 Identities=22% Similarity=0.236 Sum_probs=231.9
Q ss_pred cccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcC
Q 048289 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSL 325 (920)
Q Consensus 246 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 325 (920)
.++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|++++. + ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 344444444444444444432 2 344444445555544444432 2 44444555555555544432 1 4444555
Q ss_pred ceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCC
Q 048289 326 VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSH 405 (920)
Q Consensus 326 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 405 (920)
++|++++|.+++ ++ +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCC
Confidence 555555554443 22 44445555555555555442 1444555555555555333333 234455555555555
Q ss_pred CccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCc
Q 048289 406 NSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485 (920)
Q Consensus 406 n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 485 (920)
|.++... ...+++|++|++++|.++.++ +..+++|+.|++++|++++ +| +. .+++|+.|++++|.++++
T Consensus 180 n~l~~l~----l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 180 NKITELD----VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCCCCC----CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCC
T ss_pred Cccceec----cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--cc--ccCCCCEEEeeCCcCCCc
Confidence 5554421 334566666666666666653 6667777888888887776 44 33 667888888888888887
Q ss_pred cCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceee
Q 048289 486 ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLD 565 (920)
Q Consensus 486 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~ 565 (920)
+...+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.. ...|+.|+
T Consensus 249 ~~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L~ 313 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ--AAGITELD 313 (457)
T ss_dssp CCTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT--TCCCSCCC
T ss_pred CHHHCCCCCEEeccCC-----------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC--CCcceEec
Confidence 7777788888888776 46678888888877776 567899999999999988877742 22366666
Q ss_pred cCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeec
Q 048289 566 MRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645 (920)
Q Consensus 566 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 645 (920)
+++| ++|+.|++++|++++. + +.++++|+.|++++|++++ ++.|..|++++|.+.|
T Consensus 314 l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 314 LSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp CTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred hhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence 5554 6899999999999984 3 8899999999999999986 3566777899999988
Q ss_pred ccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289 646 PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681 (920)
Q Consensus 646 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 681 (920)
. ..+..|..+++++|+++|.+|..++...
T Consensus 370 ~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~ 398 (457)
T 3bz5_A 370 E-------GQTITMPKETLTNNSLTIAVSPDLLDQF 398 (457)
T ss_dssp E-------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred c-------ceeeecCccccccCcEEEEcChhHhccc
Confidence 6 1345678899999999999997765443
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-34 Score=332.42 Aligned_cols=137 Identities=17% Similarity=0.235 Sum_probs=116.4
Q ss_pred CCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEc
Q 048289 512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNL 590 (920)
Q Consensus 512 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 590 (920)
++|++|++++|.+++..|..+..+++|++|++++|++++..|..+...+ |+.|++++|.+++..|..|..+++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 3566777777777777777888888888888888888877777777766 888888888888888888889999999999
Q ss_pred cCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccC
Q 048289 591 NDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648 (920)
Q Consensus 591 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 648 (920)
++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999998888899999999999999999997777778899999999999999987765
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.3e-37 Score=331.62 Aligned_cols=284 Identities=30% Similarity=0.445 Sum_probs=199.1
Q ss_pred CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCcc--ccceEecCCC--CcEEEEECCCCCCcc--cCCCCCCc
Q 048289 1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCS--WDGVTCDMMT--GHVTGLDLSCSRLHG--SIPSDSSL 74 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~~~l 74 (920)
||++||+++.++. .+++|..+++||. |.||+|+..+ ++|++|+|+++.+.| .+|. .+
T Consensus 10 aL~~~k~~~~~~~---------------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l 72 (313)
T 1ogq_A 10 ALLQIKKDLGNPT---------------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SL 72 (313)
T ss_dssp HHHHHHHHTTCCG---------------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GG
T ss_pred HHHHHHHhcCCcc---------------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hH
Confidence 6899999986542 5899988889998 9999998654 899999999999998 7777 78
Q ss_pred cCCCCCCEEECCC-CCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289 75 FSLPHLQILNLAF-NDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN 153 (920)
Q Consensus 75 ~~l~~L~~L~Ls~-~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~ 153 (920)
..+++|++|++++ |.+.+. +|..++++++|++|+|++|.+++.+|..+.++++|++|++++|.+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-------------- 137 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-------------- 137 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE--------------
T ss_pred hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc--------------
Confidence 8899999999985 777765 788888888888888888888888888888888888888888744
Q ss_pred CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCC-CCCEEEccCCCCCCcCCC-CcCCCCCCCE
Q 048289 154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLP-NLQNLILSYNKNLTSVFP-KVNWSSPLRF 231 (920)
Q Consensus 154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~-~~~~l~~L~~ 231 (920)
++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++| .+.+.+| .+..++ |++
T Consensus 138 --------------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 138 --------------SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp --------------ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSE
T ss_pred --------------CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccE
Confidence 334555666666666666666666666666666665 6666666665 3443333 333333 555
Q ss_pred EEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCC
Q 048289 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311 (920)
Q Consensus 232 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 311 (920)
|++++|.+.+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 55555555555666666666666666666666644443 55566666666666666666666666666666666666666
Q ss_pred CCcccccccCCCcCceeeccCcc
Q 048289 312 NGPISSSVSRLHSLVTIYLSYNS 334 (920)
Q Consensus 312 ~~~~~~~l~~l~~L~~L~L~~n~ 334 (920)
++.+|.. ..+++|+.+++++|.
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCC-ccccccChHHhcCCC
Confidence 6555554 555666666666665
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.8e-35 Score=333.20 Aligned_cols=361 Identities=19% Similarity=0.182 Sum_probs=233.8
Q ss_pred cccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCC
Q 048289 336 NGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP 415 (920)
Q Consensus 336 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 415 (920)
.+..+..+..+++|++|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~------ 98 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLT------ 98 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS------
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCc------
Confidence 334445566677777777777777754 3 567777777777777776642 1 445555555555555544
Q ss_pred CCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccce
Q 048289 416 VNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRY 495 (920)
Q Consensus 416 ~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~ 495 (920)
.++ +..+++|++|++++|++++. + +. .+++|++|++++|.++++....+++|++
T Consensus 99 -------------------~~~--~~~l~~L~~L~L~~N~l~~l-~--~~--~l~~L~~L~l~~N~l~~l~l~~l~~L~~ 152 (457)
T 3bz5_A 99 -------------------NLD--VTPLTKLTYLNCDTNKLTKL-D--VS--QNPLLTYLNCARNTLTEIDVSHNTQLTE 152 (457)
T ss_dssp -------------------CCC--CTTCTTCCEEECCSSCCSCC-C--CT--TCTTCCEEECTTSCCSCCCCTTCTTCCE
T ss_pred -------------------eee--cCCCCcCCEEECCCCcCCee-c--CC--CCCcCCEEECCCCccceeccccCCcCCE
Confidence 332 44445555555555555442 2 22 4455555555555555555445556666
Q ss_pred EecccCcCCCCCCC-CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccc
Q 048289 496 LDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHG 573 (920)
Q Consensus 496 L~L~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~ 573 (920)
|++++|+..+.++. .+++|++|++++|++++ +| +..+++|+.|++++|++++. .+...+ |+.|++++|++++
T Consensus 153 L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp EECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred EECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 66666643333322 24566666666666665 23 56666777777777776654 134444 6677777777766
Q ss_pred cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR 653 (920)
Q Consensus 574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 653 (920)
+| +..+++|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|++.+.+|.
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---- 282 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---- 282 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----
Confidence 34 566677777777777776543 344566666666654 345667777777776663
Q ss_pred CCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCC
Q 048289 654 FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSG 733 (920)
Q Consensus 654 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~ 733 (920)
..+++|+.|++++|++.+.+|... ..+..... ...+.|++|++++
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~----~~L~~L~l-------------------------------~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQA----AGITELDL-------------------------------SQNPKLVYLYLNN 327 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTT----CCCSCCCC-------------------------------TTCTTCCEEECTT
T ss_pred cccccCCEEECCCCcccceeccCC----CcceEech-------------------------------hhcccCCEEECCC
Confidence 346788888888888887777421 11211110 1136789999999
Q ss_pred CcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCC
Q 048289 734 NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813 (920)
Q Consensus 734 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 813 (920)
|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|+++|. .++..|..+++++|+++|.||
T Consensus 328 N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 328 TELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred Cccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 999984 3 9999999999999999997 35788899999999987 355678899999999999999
Q ss_pred CC
Q 048289 814 QG 815 (920)
Q Consensus 814 ~~ 815 (920)
..
T Consensus 392 ~~ 393 (457)
T 3bz5_A 392 PD 393 (457)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=331.31 Aligned_cols=346 Identities=19% Similarity=0.183 Sum_probs=268.3
Q ss_pred eEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCC
Q 048289 425 MLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK 504 (920)
Q Consensus 425 ~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~ 504 (920)
.++.+++.++.+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.++.+.+..+.+
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~------------ 78 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFNN------------ 78 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTT------------
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhhC------------
Confidence 45555556666665432 4566666666666655555554 5555555555555555543322221
Q ss_pred CCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCC
Q 048289 505 GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGS 583 (920)
Q Consensus 505 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~ 583 (920)
+++|++|++++|++++..+..|.++++|++|++++|++.+..+..+.... |+.|++++|.+.+..+..|..++
T Consensus 79 ------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 79 ------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp ------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred ------CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 34667777777777766666778888888888888888887777777776 89999999999888888999999
Q ss_pred cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEE
Q 048289 584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD 663 (920)
Q Consensus 584 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 663 (920)
+|+.|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++... ....+|+.|+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ 230 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLS 230 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEE
Confidence 99999999999997777789999999999999999998888889999999999999998888777655 3455899999
Q ss_pred ccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhh
Q 048289 664 LSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEV 743 (920)
Q Consensus 664 Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~ 743 (920)
+++|++++ +|...+.. ++.|+.|+|++|.+++..+..
T Consensus 231 l~~n~l~~-~~~~~~~~------------------------------------------l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 231 ITHCNLTA-VPYLAVRH------------------------------------------LVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp EESSCCCS-CCHHHHTT------------------------------------------CTTCCEEECCSSCCCEECTTS
T ss_pred CcCCcccc-cCHHHhcC------------------------------------------ccccCeeECCCCcCCccChhh
Confidence 99999984 55443332 456799999999999888889
Q ss_pred hhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCc
Q 048289 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823 (920)
Q Consensus 744 l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 823 (920)
|..+++|+.|+|++|++++..|.+|..+++|++|||++|++++..+..|..+++|++|++++|++.+..+....+.....
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~ 347 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR 347 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc
Confidence 99999999999999999999999999999999999999999998888999999999999999999875442211112223
Q ss_pred ccccCCcCCCCCCC
Q 048289 824 DSYNGNMGLCGFPL 837 (920)
Q Consensus 824 ~~~~~n~~lcg~~~ 837 (920)
..+.++...|+.|.
T Consensus 348 ~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 348 LNFNRQQPTCATPE 361 (477)
T ss_dssp SCCTTCCCBEEESG
T ss_pred cccCccCceeCCch
Confidence 34566777786653
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-32 Score=313.02 Aligned_cols=346 Identities=26% Similarity=0.350 Sum_probs=204.6
Q ss_pred CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCE
Q 048289 52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS 131 (920)
Q Consensus 52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 131 (920)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+.. ++. ++.+++|++|++++|.+.+..+ ++++++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 357777777776652 33 36677777777777777765 343 7777777777777777764333 777777777
Q ss_pred EEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 048289 132 LDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILS 211 (920)
Q Consensus 132 L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 211 (920)
|++++|.+..++. +.++++|++|++++|.+.+. + .+..+++|++|++++ .+.+. ..+.++++|++|+++
T Consensus 117 L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 117 LTLFNNQITDIDP------LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDIS 185 (466)
T ss_dssp EECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECC
T ss_pred EECCCCCCCCChH------HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECc
Confidence 7777776654321 56667777777777666543 2 366666777777653 33322 226666666666666
Q ss_pred CCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc
Q 048289 212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291 (920)
Q Consensus 212 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 291 (920)
+| .+.. ++.+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. ..+..+++|++|++++|.+.+..
T Consensus 186 ~n-~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 186 SN-KVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp SS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CC-cCCC-ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence 66 3332 2345556666666666666655443 55566666666666666532 34556666666666666666443
Q ss_pred hhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCC
Q 048289 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV 371 (920)
Q Consensus 292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 371 (920)
+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..++
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc
Confidence 3 5566666666666666654433 5556666666666666653322 4555666666666666665443 45566
Q ss_pred CCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc
Q 048289 372 NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP 437 (920)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp 437 (920)
+|+.|++++|.+++. ..+..+++|+.|++++|++++.. + ...+++|+.|++++|.++.+|
T Consensus 332 ~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLT--P-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCG--G-GTTCTTCCEEECCCEEEECCC
T ss_pred cCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccc--h-hhcCCCCCEEeccCCcccCCc
Confidence 666666666665543 23455556666666655554332 1 344455555555555554443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.5e-32 Score=310.07 Aligned_cols=349 Identities=26% Similarity=0.337 Sum_probs=239.5
Q ss_pred cCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcC
Q 048289 75 FSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNL 154 (920)
Q Consensus 75 ~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l 154 (920)
..+++|++|+++++.+.. +| .+..+++|++|+|++|.+++. |. +.++++|++|++++|.+..+.. +.++
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l 111 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP------LANL 111 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh------hcCC
Confidence 457889999999998875 55 478899999999999999854 44 8999999999999998765432 6788
Q ss_pred CCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEc
Q 048289 155 NELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234 (920)
Q Consensus 155 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 234 (920)
++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++++ ... .+.+..+++|++|++
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~--~~~-~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ--VTD-LKPLANLTTLERLDI 184 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES--CCC-CGGGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc--ccC-chhhccCCCCCEEEC
Confidence 889999998888876544 7888888888888888774 33 4788888888888643 222 234667777777777
Q ss_pred cCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCc
Q 048289 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP 314 (920)
Q Consensus 235 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (920)
++|.+.+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 77776643 236677777777777777765433 56677777777777776643 3466677777777777777654
Q ss_pred ccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhh
Q 048289 315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAE 394 (920)
Q Consensus 315 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 394 (920)
.+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~ 329 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSS 329 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGG
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hcc
Confidence 43 6666777777777776664322 5566667777777666665433 5566666666666666654332 344
Q ss_pred cCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcE
Q 048289 395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH 474 (920)
Q Consensus 395 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~ 474 (920)
+++|++|++++| .++.+ ..+..+++|+.|++++|++.+..| +. .+++|+.
T Consensus 330 l~~L~~L~l~~n-------------------------~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~ 379 (466)
T 1o6v_A 330 LTKLQRLFFYNN-------------------------KVSDV-SSLANLTNINWLSAGHNQISDLTP--LA--NLTRITQ 379 (466)
T ss_dssp CTTCCEEECCSS-------------------------CCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GT--TCTTCCE
T ss_pred CccCCEeECCCC-------------------------ccCCc-hhhccCCCCCEEeCCCCccCccch--hh--cCCCCCE
Confidence 555555555555 44444 245566667777777777666555 33 5667777
Q ss_pred EECCCCcCcCcc
Q 048289 475 LNLSHNFLTGIE 486 (920)
Q Consensus 475 L~Ls~n~l~~~~ 486 (920)
|++++|.+++.+
T Consensus 380 L~l~~n~~~~~p 391 (466)
T 1o6v_A 380 LGLNDQAWTNAP 391 (466)
T ss_dssp EECCCEEEECCC
T ss_pred EeccCCcccCCc
Confidence 777777776654
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.3e-34 Score=307.00 Aligned_cols=258 Identities=31% Similarity=0.521 Sum_probs=186.2
Q ss_pred CCceEEecCceecc--cCcccccCCCCcCeEeCCC-CcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEE
Q 048289 513 SLNFISVSNNKLSG--EIPLSFCNMSSIFYVNLSN-NSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589 (920)
Q Consensus 513 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 589 (920)
+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+ |..|..+++|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-----------------------p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-----------------------PPAIAKLTQLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-----------------------CGGGGGCTTCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-----------------------ChhHhcCCCCCEEE
Confidence 56666666666665 5566666666666666653 5555444 44555555555555
Q ss_pred ccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCC-CCcEEEccCCc
Q 048289 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP-KLRILDLSNNE 668 (920)
Q Consensus 590 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~ 668 (920)
|++|++++.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ ..++ +|+.|++++|+
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCe
Confidence 55555555555555555556666666665555555555556666666666666555555443 2344 66667777776
Q ss_pred CcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccC
Q 048289 669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLN 748 (920)
Q Consensus 669 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~ 748 (920)
+++.+|..+ .. +. |+.|++++|.+++.+|..++.++
T Consensus 186 l~~~~~~~~-~~------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 186 LTGKIPPTF-AN------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp EEEECCGGG-GG------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred eeccCChHH-hC------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCC
Confidence 666666432 11 22 68899999999988999999999
Q ss_pred CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccC
Q 048289 749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNG 828 (920)
Q Consensus 749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~ 828 (920)
+|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.|
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 999999999999988777 7889999999999999999999999999999999999999999999988788888888899
Q ss_pred CcCCCCCCCCCCC
Q 048289 829 NMGLCGFPLSEKC 841 (920)
Q Consensus 829 n~~lcg~~~~~~c 841 (920)
|+.+||.|+. .|
T Consensus 301 N~~lc~~p~~-~C 312 (313)
T 1ogq_A 301 NKCLCGSPLP-AC 312 (313)
T ss_dssp SSEEESTTSS-CC
T ss_pred CCCccCCCCC-CC
Confidence 9999998875 47
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=308.10 Aligned_cols=323 Identities=22% Similarity=0.235 Sum_probs=262.3
Q ss_pred EECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCC
Q 048289 57 LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSG 136 (920)
Q Consensus 57 L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~ 136 (920)
++.++..+. .+|. .+ .+++++|+|++|.++.. .+..|.++++|++|+|++|.+++..|..+.++++|++|++++
T Consensus 16 v~c~~~~l~-~ip~--~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 16 VLCHRKRFV-AVPE--GI--PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EECCSCCCS-SCCS--CC--CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCcC-cCCC--CC--CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 344444444 4454 33 35889999999998874 567789999999999999999988888899999999999999
Q ss_pred CCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCC
Q 048289 137 NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNL 216 (920)
Q Consensus 137 n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 216 (920)
|.+..++.. .+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++| .+
T Consensus 90 n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l 164 (477)
T 2id5_A 90 NRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NL 164 (477)
T ss_dssp SCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CC
T ss_pred CcCCccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cC
Confidence 987765433 3467888888888888888888888888999999999999888777888888899999999888 55
Q ss_pred CcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhh
Q 048289 217 TSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF 295 (920)
Q Consensus 217 ~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 295 (920)
....+ .+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|.++...+..+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 55444 57788888888888888888777788888889999988887776777666666788899998888886655778
Q ss_pred hcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCE
Q 048289 296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLID 375 (920)
Q Consensus 296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 375 (920)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 88888999999988888777778888888888888888888777888888888888888888888777777888888888
Q ss_pred EEccCCcCCCcchhh
Q 048289 376 LSLSSNNLSGNVELY 390 (920)
Q Consensus 376 L~L~~n~l~~~~~~~ 390 (920)
|++++|++.+.....
T Consensus 325 L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 325 LILDSNPLACDCRLL 339 (477)
T ss_dssp EECCSSCEECSGGGH
T ss_pred EEccCCCccCccchH
Confidence 888888887655443
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=4.9e-31 Score=295.15 Aligned_cols=348 Identities=22% Similarity=0.230 Sum_probs=231.9
Q ss_pred cCCCCCCCCCcc-ccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCc-CCCCCCCCE
Q 048289 30 MISWKEEKDCCS-WDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAH 107 (920)
Q Consensus 30 l~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~-~~~l~~L~~ 107 (920)
+++|..+.+||. |.++.|....-++ +-..... .... .-..++++++|+++++.+.. +|.. +..+++|++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i---~~~~~~~--~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~ 73 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI---DMQTQDV--YFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVEL 73 (390)
T ss_dssp ----CCEECBCC------EEEESCEE---CSSCCCC--EESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCSE
T ss_pred cCCCCCccceehhhhhhccceeeeee---ecccccc--cccc--cccccCCceEEEecCCchhh--CChhHhcccccCcE
Confidence 678988888875 4444443211111 1111111 1111 23457889999999888765 5554 678899999
Q ss_pred EeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEcc
Q 048289 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLG 187 (920)
Q Consensus 108 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls 187 (920)
|++++|.+.+..+..++.+++|++|++++|.+..+... .+.++++|++|++++|.++...+..+.++++|++|+++
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 99999998877777888999999999999877654432 35677888888888888876555556788888888888
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccC
Q 048289 188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI 267 (920)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (920)
+|.+.+..+..+..+++|++|++++| .+... .+..+++|+.|++++|.+.+ +...++|++|++++|.+...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~- 220 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV- 220 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-
T ss_pred CCccCccChhhccCCCCCCEEECCCC-cCCcc--ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-
Confidence 88888766777888888888888887 44432 35566777888887776653 23345777888888777643
Q ss_pred cccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCC
Q 048289 268 PSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSP 347 (920)
Q Consensus 268 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 347 (920)
|. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..++
T Consensus 221 ~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~ 295 (390)
T 3o6n_A 221 RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295 (390)
T ss_dssp EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCT
T ss_pred cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCC
Confidence 32 2346777888888777753 45777777888888887777777777777777777777777776 3455556677
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289 348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409 (920)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 409 (920)
+|++|++++|.++ .+|..+..+++|+.|++++|.++.. + +..+++|+.|++++|++.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEE
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C---chhhccCCEEEcCCCCcc
Confidence 7777777777776 3455566667777777777766532 1 344455555555555443
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=9.3e-30 Score=280.13 Aligned_cols=306 Identities=28% Similarity=0.369 Sum_probs=185.8
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289 74 LFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN 153 (920)
Q Consensus 74 l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~ 153 (920)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+..++ .+..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~------~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS------ALQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG------GGTT
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch------HHcC
Confidence 3455666666666666554 33 25566666666666666653 333 666666666666666554321 2455
Q ss_pred CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEE
Q 048289 154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD 233 (920)
Q Consensus 154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 233 (920)
+++|++|++++|.+.+..+ +..+++|++|++++|.....+ ..+..+++|++|++++| .+.... .+..+++|++|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~-~~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES-KVKDVT-PIANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEE
T ss_pred CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCC-CcCCch-hhccCCCCCEEE
Confidence 5566666666655554332 566666666666666544333 33666666666666666 333222 255666666666
Q ss_pred ccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313 (920)
Q Consensus 234 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (920)
+++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 66666654322 6666777777777777664433 6667777777777777764433 6667777777777777665
Q ss_pred cccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhh
Q 048289 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFA 393 (920)
Q Consensus 314 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 393 (920)
. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+ +.
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~ 330 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LA 330 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GG
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hh
Confidence 3 3466667777777777766532 345666777777777777776666667777777777777777664433 55
Q ss_pred hcCCCceEEcCCCcc
Q 048289 394 ELKNLLGLDLSHNSL 408 (920)
Q Consensus 394 ~l~~L~~L~Ls~n~l 408 (920)
.+++|++|++++|.+
T Consensus 331 ~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 331 SLSKMDSADFANQVI 345 (347)
T ss_dssp GCTTCSEESSSCC--
T ss_pred hhhccceeehhhhcc
Confidence 566666666666655
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.6e-30 Score=305.26 Aligned_cols=347 Identities=22% Similarity=0.249 Sum_probs=241.9
Q ss_pred cccCCCCCCCCCcc----ccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCc-CCCC
Q 048289 28 SKMISWKEEKDCCS----WDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRF 102 (920)
Q Consensus 28 ~~l~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~-~~~l 102 (920)
..+++|..+.+||. |.++.|+. + ++.........+ .-..+.++++|+++++.+.. +|.. +..+
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l 74 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRK--LPAALLDSF 74 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCEESC----SSGGGCCCSEEEESSCEESE--ECTHHHHHC
T ss_pred ccccCCCCCCcCcccCcCceeEecCc---e---ecccccccccCc----ccccCCCceEEEeeCCCCCC--cCHHHHccC
Confidence 36789988888874 66665542 1 122121111111 22356788899998888766 5543 6788
Q ss_pred CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCC
Q 048289 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT 182 (920)
Q Consensus 103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 182 (920)
++|++|+|++|.+.+..|..++.+++|++|++++|.+..++. ..+.++++|++|++++|.++...+..|.++++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH----HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 899999999999887777788889999999999887765443 2356778888888888888866666678888888
Q ss_pred EEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCc
Q 048289 183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNN 262 (920)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 262 (920)
+|++++|.+.+..|..+..+++|++|++++| .+.+. .++.+++|+.|++++|.+.+ +...++|++|++++|.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 222 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBC--CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCc--ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCc
Confidence 8888888888777777888888888888887 44443 35567778888888877654 3344678888888887
Q ss_pred CCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCcc
Q 048289 263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342 (920)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (920)
+... +..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ +|..
T Consensus 223 l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 296 (597)
T 3oja_B 223 INVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 296 (597)
T ss_dssp CCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECS
T ss_pred cccc-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcc
Confidence 7643 2222 35788888888887753 567778888888888888877777777788888888888887764 5666
Q ss_pred ccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289 343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409 (920)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 409 (920)
+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|+.|++++|++.
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEE
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCC
Confidence 666777888888887777 4556667777777777777777632 1 344555555555555543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.7e-29 Score=278.13 Aligned_cols=304 Identities=22% Similarity=0.359 Sum_probs=262.5
Q ss_pred CCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCC
Q 048289 51 TGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLV 130 (920)
Q Consensus 51 ~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 130 (920)
-.++++|+++++.+.. ++ .+..+++|++|++++|.++. ++. +..+++|++|++++|.+++ +| .+.++++|+
T Consensus 43 l~~L~~L~l~~~~i~~-~~---~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ---GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred cccccEEEEeCCcccc-ch---hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 3579999999998863 33 58899999999999999986 555 8999999999999999984 44 699999999
Q ss_pred EEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 048289 131 SLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLIL 210 (920)
Q Consensus 131 ~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 210 (920)
+|++++|.+..++. +..+++|++|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 114 ~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 114 ELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp EEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred EEECcCCcccCchh------hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 99999998876432 77899999999999976655444 8999999999999999885433 889999999999
Q ss_pred cCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCccc
Q 048289 211 SYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ 290 (920)
Q Consensus 211 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 290 (920)
++| .+... +.+..+++|+++++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 185 ~~n-~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 185 NYN-QIEDI-SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp TTS-CCCCC-GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred cCC-ccccc-ccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 999 55543 348889999999999999987654 8899999999999999986533 89999999999999999864
Q ss_pred chhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcC
Q 048289 291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL 370 (920)
Q Consensus 291 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 370 (920)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..| +..+
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l 332 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence 4688999999999999999875 468899999999999999998888889999999999999999998766 8899
Q ss_pred CCCCEEEccCCcCC
Q 048289 371 VNLIDLSLSSNNLS 384 (920)
Q Consensus 371 ~~L~~L~L~~n~l~ 384 (920)
++|++|++++|.++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 99999999999875
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.4e-30 Score=286.69 Aligned_cols=134 Identities=23% Similarity=0.255 Sum_probs=86.1
Q ss_pred CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289 537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG 615 (920)
Q Consensus 537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 615 (920)
+|+.|++++|.+++. ..+...+ |+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|+++
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence 344444444444432 2233333 5555555555555566667777777777777777774 45556677788888888
Q ss_pred CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHh
Q 048289 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ 679 (920)
Q Consensus 616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 679 (920)
+|+++ .+|..+..+++|++|++++|+++.. + ...+++|+.|++++|++.+.....++.
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K----LSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCcce-ecCccccccCcCCEEECCCCcccee-C----chhhccCCEEEcCCCCccchhHHHHHH
Confidence 88877 4566677778888888888887643 2 235678888888888888754444433
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-29 Score=299.40 Aligned_cols=134 Identities=23% Similarity=0.250 Sum_probs=87.8
Q ss_pred CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289 537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG 615 (920)
Q Consensus 537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 615 (920)
+|+.|++++|.+++. ..+...+ |+.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|+
T Consensus 233 ~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 344444444444431 2233333 5555555555555666667777777888888887775 45566677888888888
Q ss_pred CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHh
Q 048289 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ 679 (920)
Q Consensus 616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 679 (920)
+|+++ .+|..+..+++|++|++++|++.+.. ...+++|+.|++++|++.+..+..++.
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 88887 56777777888888888888876542 234678888899998888765444433
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.5e-30 Score=280.92 Aligned_cols=260 Identities=23% Similarity=0.371 Sum_probs=167.0
Q ss_pred CcccccccCccCCCCCCCCCcccCCCCcccCCC----CCCCCCccccceEecC--------CCCcEEEEECCCCCCcccC
Q 048289 1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISW----KEEKDCCSWDGVTCDM--------MTGHVTGLDLSCSRLHGSI 68 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~ 68 (920)
||++||+.+..+.. +.+++| ....++|.|.|+.|+. ...+|+.|+|+++.+. .+
T Consensus 31 aLl~~k~~~~~~~~-------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 31 VLSQWQRHYNADRN-------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp HHHHHHHHHHHCCT-------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred HHHHHHHhccCCch-------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 57888888753322 256788 4567899999999952 2367888888888776 56
Q ss_pred CCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHH
Q 048289 69 PSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLK 148 (920)
Q Consensus 69 ~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~ 148 (920)
|. .+..+++|++|+|++|.+.. +|..++.+++|++|+|++|.++ .+|..++++++|++|++++|...
T Consensus 97 p~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-------- 163 (328)
T 4fcg_A 97 PD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-------- 163 (328)
T ss_dssp CS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC--------
T ss_pred Ch--hhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc--------
Confidence 65 57777788888887777772 7777777777777777777777 66777777777777777776433
Q ss_pred HHHhcCCCCCEEEcCCCCCCCCcchh---------ccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcC
Q 048289 149 ALVQNLNELQELVLNSVDMSYEVPSF---------LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV 219 (920)
Q Consensus 149 ~~~~~l~~L~~L~L~~~~~~~~~~~~---------l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 219 (920)
+.+|.. +..+++|++|++++|.++ .+|..+..+++|++|++++| .+.+.
T Consensus 164 --------------------~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-~l~~l 221 (328)
T 4fcg_A 164 --------------------TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-PLSAL 221 (328)
T ss_dssp --------------------CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS-CCCCC
T ss_pred --------------------cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC-CCCcC
Confidence 233332 344677777777777776 66666777777777777766 44433
Q ss_pred CCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCC
Q 048289 220 FPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299 (920)
Q Consensus 220 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 299 (920)
.+.+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+++++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 33455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCEEECcCC
Q 048289 300 QLSFLDFSNN 309 (920)
Q Consensus 300 ~L~~L~L~~n 309 (920)
+|+.+++..+
T Consensus 302 ~L~~l~l~~~ 311 (328)
T 4fcg_A 302 ANCIILVPPH 311 (328)
T ss_dssp TTCEEECCGG
T ss_pred CceEEeCCHH
Confidence 5555555443
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6.8e-32 Score=309.74 Aligned_cols=388 Identities=20% Similarity=0.149 Sum_probs=212.8
Q ss_pred CcCceeeccCccccccCCcc-ccCCCCCCEEEccCCCCCCC----chhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCC
Q 048289 323 HSLVTIYLSYNSLNGTIPSG-LFTSPLLESIDLRNNQLTGS----ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397 (920)
Q Consensus 323 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 397 (920)
++|++|++++|.++...... +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+......+..++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 44566666666654322121 34455566666666655532 23344455555555555555543222222222220
Q ss_pred CceEEcCCCccccCccCCCCCCCCcCceEeeeccCCc-----CCchhhhcccccceeccCCCccCCCCCchhhccCCCCC
Q 048289 398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS-----EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTL 472 (920)
Q Consensus 398 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L 472 (920)
..++|++|++++|.++ .++..+..+++|++|++++|.+.+..+..+...-.
T Consensus 83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--- 138 (461)
T 1z7x_W 83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL--- 138 (461)
T ss_dssp ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT---
T ss_pred ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh---
Confidence 0013444444444443 23555666666666666666654333322221000
Q ss_pred cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceeccc----CcccccCCCCcCeEeCCCCcC
Q 048289 473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE----IPLSFCNMSSIFYVNLSNNSL 548 (920)
Q Consensus 473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l 548 (920)
.. .++|++|++++|++++. ++..+..+++|++|++++|.+
T Consensus 139 ---------------~~---------------------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 139 ---------------DP---------------------QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ---------------ST---------------------TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ---------------cC---------------------CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 00 11344444444444432 244455566777777777766
Q ss_pred CCcCcccccc-----c-ccceeecCCCccccc----CCccccCCCcccEEEccCCcccccc-----CccccCCCCCcEEE
Q 048289 549 NGMIPPCLAN-----S-SLWFLDMRMNNFHGS----IPQTFSKGSRLTILNLNDNQLEGSV-----PLSLVNCSFLEVLD 613 (920)
Q Consensus 549 ~~~~p~~~~~-----~-~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~ 613 (920)
.+..+..+.. . .|+.|++++|.+++. ++..+..+++|+.|++++|++++.. +..+..+++|++|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 5433322221 2 367777777766653 3555666777888888887776432 22233567788888
Q ss_pred CCCCccccc----CchhhcCCCCCCEEEccCceeecccCCCccc---CCCCCCcEEEccCCcCcCCCchHHHhhhhcccc
Q 048289 614 VGNNRINGT----FPAWLGALSELQVLILRSNRFHGPITYSVTR---FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686 (920)
Q Consensus 614 L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 686 (920)
+++|++++. ++..+..+++|++|++++|++.+..+..+.. ...++|+.|++++|.+++.....+...+
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l----- 337 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL----- 337 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-----
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH-----
Confidence 888877754 4666667778888888888775432221111 1235788888888877754222211111
Q ss_pred CCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhc-----cCCCceEeccCcccc
Q 048289 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK-----LNSLKGLNFSHNKLT 761 (920)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~ 761 (920)
..++.|++||+++|.+++..+..+.. .++|+.|+|++|.++
T Consensus 338 ----------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 338 ----------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp ----------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ----------------------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 11356778888888887766655543 568888888888887
Q ss_pred C----CcCcccccccCCccccCCCCcccccCccccc-----CCCCCCeeeccCCccc
Q 048289 762 G----LIPYSLENLTQLESLDLSSNKVAGEIPWQLT-----SLNFLQVLNLSQNQLV 809 (920)
Q Consensus 762 ~----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-----~l~~L~~L~ls~N~l~ 809 (920)
+ .+|..+..+++|++||+++|++++.-...+. ....|+.|++.++...
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 6 6777778888888888888887754211111 1234566666555443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.6e-28 Score=268.06 Aligned_cols=284 Identities=21% Similarity=0.233 Sum_probs=187.9
Q ss_pred CcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcC
Q 048289 472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548 (920)
Q Consensus 472 L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 548 (920)
++.++++++.++.++....++++.|++++|.+.+..+. ..++|++|++++|++++..|..|.++++|++|++++|++
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 44445554444444443344555555555555544332 245677777777777777777788888888888888877
Q ss_pred CCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccc--cccCccccCCCCCcEEECCCCcccccCchh
Q 048289 549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE--GSVPLSLVNCSFLEVLDVGNNRINGTFPAW 626 (920)
Q Consensus 549 ~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 626 (920)
+ .+|..+. ..|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..+..+ +|++|++++|++++ +|..
T Consensus 115 ~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~ 190 (332)
T 2ft3_A 115 V-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD 190 (332)
T ss_dssp C-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS
T ss_pred C-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc
Confidence 7 3444443 34778888888877666667777778888888888775 3566667766 77778888887774 4444
Q ss_pred hcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCccee
Q 048289 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY 706 (920)
Q Consensus 627 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 706 (920)
+. ++|++|++++|++.+..+..+ ..+++|+.|++++|++++..|.. +..
T Consensus 191 ~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~-~~~-------------------------- 239 (332)
T 2ft3_A 191 LP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGS-LSF-------------------------- 239 (332)
T ss_dssp SC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTG-GGG--------------------------
T ss_pred cc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhH-hhC--------------------------
Confidence 33 677777777777776655444 45677777777777777654422 111
Q ss_pred eEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccc------cCCccccCC
Q 048289 707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL------TQLESLDLS 780 (920)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l------~~L~~L~Ls 780 (920)
++.|+.|+|++|+++ .+|..++.+++|+.|++++|++++..+..|..+ .+|+.|+++
T Consensus 240 ----------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 240 ----------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ----------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ----------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence 345677777777777 667777777777777777777777766666543 567777777
Q ss_pred CCccc--ccCcccccCCCCCCeeeccCCc
Q 048289 781 SNKVA--GEIPWQLTSLNFLQVLNLSQNQ 807 (920)
Q Consensus 781 ~N~l~--g~ip~~l~~l~~L~~L~ls~N~ 807 (920)
+|.+. +..|..|..++.|+.+++++|+
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccCcccccccchhhhhhccccc
Confidence 77776 5666777777777777777764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-27 Score=260.33 Aligned_cols=293 Identities=22% Similarity=0.243 Sum_probs=199.9
Q ss_pred EEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEE
Q 048289 54 VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD 133 (920)
Q Consensus 54 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 133 (920)
++.++++++.+. .+|. .+ .+.|++|++++|.++.. .+..|+++++|++|+|++|.+++..|..++++++|++|+
T Consensus 33 l~~l~~~~~~l~-~lp~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPK--DL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTEEECTTSCCC-SCCC--SC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CeEEEecCCCcc-ccCc--cC--CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 445666666665 4554 33 36899999999999874 445799999999999999999988899999999999999
Q ss_pred cCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEcc
Q 048289 134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQG--SIPENIFRLPNLQNLILS 211 (920)
Q Consensus 134 Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~ 211 (920)
+++|.+..++... .++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 107 Ls~n~l~~l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 107 LSKNQLKELPEKM-------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCSSCCSBCCSSC-------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCCCcCCccChhh-------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 9999887655432 2688899999998888888888888899999998888753 566777888888888888
Q ss_pred CCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc
Q 048289 212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291 (920)
Q Consensus 212 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 291 (920)
+| .+......+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus 180 ~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 87 4443222222 56666666666666665666666666666666666666555555666666666666666665 45
Q ss_pred hhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCC--Cchhhhhc
Q 048289 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG--SISNSISE 369 (920)
Q Consensus 292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~ 369 (920)
|..+..+++|++|++++|++++..+..|.... .....+.++.+++++|.+.. ..|..|..
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCcccccc
Confidence 55566666666666666666554444332210 00112455666666665542 44556666
Q ss_pred CCCCCEEEccCC
Q 048289 370 LVNLIDLSLSSN 381 (920)
Q Consensus 370 l~~L~~L~L~~n 381 (920)
+.+++.+++++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 667777777665
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.1e-27 Score=257.83 Aligned_cols=289 Identities=22% Similarity=0.270 Sum_probs=201.5
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCC
Q 048289 78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL 157 (920)
Q Consensus 78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L 157 (920)
.++++++++++.++. +|..+. ++|++|++++|.+++..+..++++++|++|++++|.+.
T Consensus 31 c~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----------------- 89 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS----------------- 89 (330)
T ss_dssp EETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-----------------
T ss_pred CCCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-----------------
Confidence 367788888777764 565443 57788888888887665666777777777777777554
Q ss_pred CEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccC
Q 048289 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYG 236 (920)
Q Consensus 158 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~ 236 (920)
+..|..+.++++|++|++++|.++ .+|..+. ++|++|++++| .+....+ .+..+++|++|++++
T Consensus 90 -----------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 90 -----------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp -----------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCS
T ss_pred -----------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCC
Confidence 344555566666666666666665 4444433 56666666666 4443333 456666666666666
Q ss_pred CcCcc--cccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCc
Q 048289 237 CNFMG--SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP 314 (920)
Q Consensus 237 n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (920)
|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 66643 556677788888888888888874 454443 7888888888888877778888888888888888888877
Q ss_pred ccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhc------CCCCCEEEccCCcCCC-cc
Q 048289 315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISE------LVNLIDLSLSSNNLSG-NV 387 (920)
Q Consensus 315 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~-~~ 387 (920)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++++|.+.. .+
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc
Confidence 7777888888888888888887 77778888888888888888888766666543 3677888888887752 23
Q ss_pred hhhhhhhcCCCceEEcCCC
Q 048289 388 ELYMFAELKNLLGLDLSHN 406 (920)
Q Consensus 388 ~~~~~~~l~~L~~L~Ls~n 406 (920)
....|..+.+++.+++++|
T Consensus 311 ~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGGGGTTCCCGGGEEC---
T ss_pred CccccccccceeEEEeccc
Confidence 4456666777777777665
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-27 Score=261.22 Aligned_cols=293 Identities=20% Similarity=0.223 Sum_probs=183.6
Q ss_pred EEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEE
Q 048289 54 VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD 133 (920)
Q Consensus 54 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 133 (920)
++.++++++.+. .+|. .+ .++|++|++++|.+... .+..++++++|++|++++|.+++..|..++++++|++|+
T Consensus 35 l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp TTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 456677777765 5555 33 37899999999998763 456799999999999999999988888999999999999
Q ss_pred cCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEcc
Q 048289 134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQG--SIPENIFRLPNLQNLILS 211 (920)
Q Consensus 134 Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~ 211 (920)
+++|.+..++... .++|++|++++|.++...+..+..+++|++|++++|.++. ..+..+..+ +|++|+++
T Consensus 109 L~~n~l~~l~~~~-------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSSCCCSCCSSC-------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCCCcCCccCccc-------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 9999877654432 1577777777777776666667777777777777777642 455555555 66677766
Q ss_pred CCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc
Q 048289 212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291 (920)
Q Consensus 212 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 291 (920)
+| .+......+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus 181 ~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 66 3433222221 45555555555555554455555555555555555555444445555555555555555555 44
Q ss_pred hhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCC--CCchhhhhc
Q 048289 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT--GSISNSISE 369 (920)
Q Consensus 292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~ 369 (920)
|..+..+++|++|++++|++++..+..+.... .....+.|+.|++++|.+. +..+..+..
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccc
Confidence 44455555555555555555443333332210 0001345677777777665 456666777
Q ss_pred CCCCCEEEccCCc
Q 048289 370 LVNLIDLSLSSNN 382 (920)
Q Consensus 370 l~~L~~L~L~~n~ 382 (920)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777777664
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=9.3e-31 Score=300.26 Aligned_cols=359 Identities=19% Similarity=0.217 Sum_probs=181.0
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcc----cCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289 78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSG----QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN 153 (920)
Q Consensus 78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~ 153 (920)
++|++|+|+++.++.......+..+++|++|+|++|.+++ .++..+..+++|++|++++|.+.. .........
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHHHH
Confidence 3455666666655443222224455566666666665553 234445555666666666654321 222222333
Q ss_pred CC----CCCEEEcCCCCCCC----CcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCC
Q 048289 154 LN----ELQELVLNSVDMSY----EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNW 225 (920)
Q Consensus 154 l~----~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 225 (920)
++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+... ....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------------l~~~ 140 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------------LLDP 140 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------------HTST
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------------HhcC
Confidence 33 45555555555543 234444555555555555554432211111100 0112
Q ss_pred CCCCCEEEccCCcCccc----ccccccCCCCCCEEeCcCCcCCccCccccc-----CCCCCCEEEccCCcCccc----ch
Q 048289 226 SSPLRFMDLYGCNFMGS----IPASLGNLSQLTYLDLSYNNFSGHIPSTLS-----NLQQLRHLDLSNNKFTGQ----IP 292 (920)
Q Consensus 226 l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p 292 (920)
.++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 23455555555554442 234445556666666666665543332222 244666666666666542 35
Q ss_pred hhhhcCCCCCEEECcCCCCCCcc-----cccccCCCcCceeeccCcccccc----CCccccCCCCCCEEEccCCCCCCCc
Q 048289 293 CIFANLTQLSFLDFSNNQLNGPI-----SSSVSRLHSLVTIYLSYNSLNGT----IPSGLFTSPLLESIDLRNNQLTGSI 363 (920)
Q Consensus 293 ~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~ 363 (920)
..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 55555666666666666654322 12222455666666666665532 3444555666666666666655443
Q ss_pred hhhhhcC-----CCCCEEEccCCcCCCcch---hhhhhhcCCCceEEcCCCccccCccCCCC----CCCCcCceEeeecc
Q 048289 364 SNSISEL-----VNLIDLSLSSNNLSGNVE---LYMFAELKNLLGLDLSHNSLSLSTLLPVN----SSFPYLSMLSLSSC 431 (920)
Q Consensus 364 ~~~l~~l-----~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~l~~~ 431 (920)
+..+... ++|++|++++|.+++... ...+..+++|++|++++|.++........ ...++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 3333322 466666666666654321 22344556666666666655433211110 12456666666666
Q ss_pred CCc-----CCchhhhcccccceeccCCCccCC
Q 048289 432 NIS-----EFPDFLRTQHRLQILDLSDNQIRG 458 (920)
Q Consensus 432 ~l~-----~lp~~l~~~~~L~~L~Ls~n~l~~ 458 (920)
.++ .+|..+..+++|++|++++|++++
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 665 456666777777777777776654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.8e-30 Score=302.00 Aligned_cols=410 Identities=15% Similarity=0.086 Sum_probs=269.6
Q ss_pred CccCCCCCCEEECCCCCCCC--CCCCCcCC------------CCCCCCEEeCCCCCCcccCCccccCC-C-CCCEEEcCC
Q 048289 73 SLFSLPHLQILNLAFNDFNY--SYISPGFT------------RFPNLAHLNLSVSSFSGQIPAEISHL-S-KLVSLDLSG 136 (920)
Q Consensus 73 ~l~~l~~L~~L~Ls~~~~~~--~~i~~~~~------------~l~~L~~L~Ls~n~~~~~~p~~l~~l-~-~L~~L~Ls~ 136 (920)
.+..+++|++|+|+++.... ..+|..++ .+++|++|+|++|.+++..+..+... + +|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 35567888888887754210 11333333 67888888888888776666666553 3 488888888
Q ss_pred CCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCC----cchhccCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEE
Q 048289 137 NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE----VPSFLTNLSSLTSLDLGNCGLQGS----IPENIFRLPNLQNL 208 (920)
Q Consensus 137 n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L 208 (920)
|.. +....+.....++++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+.++++|++|
T Consensus 148 ~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 148 CSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp CEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred CCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 742 23345666667888888888888877655 344556778888888888887632 33344567888888
Q ss_pred EccCCCCCCcCCCCcCCCCCCCEEEccCCcCc---ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCC
Q 048289 209 ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM---GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285 (920)
Q Consensus 209 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 285 (920)
++++| .+.+....+..+++|++|+++..... ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|
T Consensus 226 ~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTC
T ss_pred eccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCC
Confidence 88887 45443336667788888888754322 234456677788888888775433 56677777888888888888
Q ss_pred cCcccch-hhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccC-----------cccccc-CCccccCCCCCCEE
Q 048289 286 KFTGQIP-CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY-----------NSLNGT-IPSGLFTSPLLESI 352 (920)
Q Consensus 286 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~-~~~~l~~l~~L~~L 352 (920)
.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++. ++.....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 8664433 4467788888888873322223334445678888888883 444432 12223347788888
Q ss_pred EccCCCCCCCchhhhhc-CCCCCEEEcc----CCcCCCc----chhhhhhhcCCCceEEcCCCc--cccCccCCCCCCCC
Q 048289 353 DLRNNQLTGSISNSISE-LVNLIDLSLS----SNNLSGN----VELYMFAELKNLLGLDLSHNS--LSLSTLLPVNSSFP 421 (920)
Q Consensus 353 ~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~ 421 (920)
+++.+.+++..+..+.. +++|+.|+++ .|.+++. .....+.++++|++|++++|. ++..........++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 88888887766666665 7888888885 5566542 122345668888888887543 43332222233467
Q ss_pred cCceEeeeccCCcC--CchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC
Q 048289 422 YLSMLSLSSCNISE--FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL 487 (920)
Q Consensus 422 ~L~~L~l~~~~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 487 (920)
+|++|++++|+++. ++..+..+++|+.|++++|.+++.....+.. .+++|++|++++|+++....
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT-KLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH-HCSSCCEEEEESCBCCTTCT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH-hcCccCeeECcCCcCCHHHH
Confidence 78888888887763 4566677888888888888875443332221 56788888888888776643
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=265.14 Aligned_cols=275 Identities=19% Similarity=0.170 Sum_probs=204.7
Q ss_pred cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF 571 (920)
Q Consensus 493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l 571 (920)
....+++++.++..+...+++|++|++++|.+++..+..|.++++|++|++++|++++..|..+...+ |++|++++|++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 33455566666655555556777777777777776666778888888888888888877677777666 88888888888
Q ss_pred cccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCC-cccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNN-RINGTFPAWLGALSELQVLILRSNRFHGPITY 649 (920)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 649 (920)
++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|++.+..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 86655667888888888888888875444 46788888888888888 46666677788888888888888888877666
Q ss_pred CcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEE
Q 048289 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTI 729 (920)
Q Consensus 650 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 729 (920)
.+ ..+++|+.|++++|++. .+|...+.. ++.|+.|
T Consensus 193 ~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------------------~~~L~~L 227 (353)
T 2z80_A 193 SL--KSIQNVSHLILHMKQHI-LLLEIFVDV------------------------------------------TSSVECL 227 (353)
T ss_dssp TT--TTCSEEEEEEEECSCST-THHHHHHHH------------------------------------------TTTEEEE
T ss_pred HH--hccccCCeecCCCCccc-cchhhhhhh------------------------------------------cccccEE
Confidence 65 45778888888888874 344333221 3567888
Q ss_pred EcCCCcCCCCchhhhh---ccCCCceEeccCccccC----CcCcccccccCCccccCCCCcccccCccc-ccCCCCCCee
Q 048289 730 DLSGNKFQGRIPEVVG---KLNSLKGLNFSHNKLTG----LIPYSLENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVL 801 (920)
Q Consensus 730 ~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L 801 (920)
++++|.+++..+..+. ....++.++|++|.+++ .+|+.++.+++|++||+++|+++. +|.. |.++++|++|
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI 306 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence 8888888876554443 45678888888888876 467888889999999999999984 5544 6889999999
Q ss_pred eccCCcccCCCC
Q 048289 802 NLSQNQLVGPIP 813 (920)
Q Consensus 802 ~ls~N~l~g~iP 813 (920)
++++|++.|..|
T Consensus 307 ~L~~N~~~~~~~ 318 (353)
T 2z80_A 307 WLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCBCCCHH
T ss_pred EeeCCCccCcCC
Confidence 999999988776
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-26 Score=249.42 Aligned_cols=249 Identities=24% Similarity=0.318 Sum_probs=156.6
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCc--Ccccccccc-cceeecCCCc
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM--IPPCLANSS-LWFLDMRMNN 570 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~~~-L~~L~L~~n~ 570 (920)
+.++++++.++..+...++++++|++++|+++...+..|.++++|++|++++|.++.. .+..+.... |++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3455555555555544556777777777777755555577788888888888877632 122222222 4455555544
Q ss_pred ccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649 (920)
Q Consensus 571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 649 (920)
+.. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..+..+..+
T Consensus 90 i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------------- 149 (306)
T 2z66_A 90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL------------------- 149 (306)
T ss_dssp EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-------------------
T ss_pred ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-------------------
Confidence 442 23334444445555555554443332 344444444444444444444444444444
Q ss_pred CcccCCCCCCcEEEccCCcCcC-CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccE
Q 048289 650 SVTRFPFPKLRILDLSNNEFTG-VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT 728 (920)
Q Consensus 650 ~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 728 (920)
++|+.|++++|.+++ .+|.. +. .++.|+.
T Consensus 150 -------~~L~~L~l~~n~l~~~~~~~~-~~------------------------------------------~l~~L~~ 179 (306)
T 2z66_A 150 -------SSLEVLKMAGNSFQENFLPDI-FT------------------------------------------ELRNLTF 179 (306)
T ss_dssp -------TTCCEEECTTCEEGGGEECSC-CT------------------------------------------TCTTCCE
T ss_pred -------cCCCEEECCCCccccccchhH-Hh------------------------------------------hCcCCCE
Confidence 455555555555543 12211 11 1355678
Q ss_pred EEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCC-CCCCeeeccCCc
Q 048289 729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQ 807 (920)
Q Consensus 729 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~ 807 (920)
|++++|.+++..|..++.+++|+.|+|++|++++..+..+..+++|++||+++|++++.+|..+..+ ++|++|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 8888888887778888888888889999998888878788888899999999999998888888888 489999999998
Q ss_pred ccCCC
Q 048289 808 LVGPI 812 (920)
Q Consensus 808 l~g~i 812 (920)
+++..
T Consensus 260 ~~~~c 264 (306)
T 2z66_A 260 FACTC 264 (306)
T ss_dssp EECSG
T ss_pred eeccc
Confidence 88753
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.5e-28 Score=291.31 Aligned_cols=460 Identities=15% Similarity=0.103 Sum_probs=328.2
Q ss_pred CcEEEEECCCCCCc---ccCCCCCCcc------------CCCCCCEEECCCCCCCCCCCCCcCCC-CCC-CCEEeCCCCC
Q 048289 52 GHVTGLDLSCSRLH---GSIPSDSSLF------------SLPHLQILNLAFNDFNYSYISPGFTR-FPN-LAHLNLSVSS 114 (920)
Q Consensus 52 ~~v~~L~L~~~~l~---~~~~~~~~l~------------~l~~L~~L~Ls~~~~~~~~i~~~~~~-l~~-L~~L~Ls~n~ 114 (920)
+++++|+|+++... +.+|. ... .+++|++|+|++|.+++. .+..+.. ++. |++|+|++|.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPE--NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCT--TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCE
T ss_pred CCCeEEEecCCcchhhcccccc--cccccchHHHHHHHhhCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCC
Confidence 35889999875431 23332 222 789999999999987654 2333444 445 9999999986
Q ss_pred -Ccc-cCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCC----CcchhccCCCCCCEEEccC
Q 048289 115 -FSG-QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY----EVPSFLTNLSSLTSLDLGN 188 (920)
Q Consensus 115 -~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~Ls~ 188 (920)
++. .++....++++|++|++++|.+...+...+......+++|++|++++|.+++ .++..+.++++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 221 2333345789999999999977655544477888899999999999999873 3455567899999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCCCCC---cCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCc
Q 048289 189 CGLQGSIPENIFRLPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG 265 (920)
Q Consensus 189 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (920)
|.+.+ ++..+..+++|++|+++...... .....+..+++|+.++++++. ...+|..+..+++|++|++++|.+++
T Consensus 230 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 230 FEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp CBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred ccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 99884 77888899999999998642221 122267888999999998853 45678888899999999999999775
Q ss_pred cCc-ccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC-----------CCCCCcc-cccccCCCcCceeeccC
Q 048289 266 HIP-STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN-----------NQLNGPI-SSSVSRLHSLVTIYLSY 332 (920)
Q Consensus 266 ~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~ 332 (920)
... ..+..+++|++|+++++...+.++..+..+++|++|++++ +.+++.. ......+++|++|+++.
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 433 3468899999999994433344555567899999999993 5665432 23345689999999998
Q ss_pred ccccccCCccccC-CCCCCEEEcc----CCCCCCC-----chhhhhcCCCCCEEEccCCc--CCCcchhhhhhhcCCCce
Q 048289 333 NSLNGTIPSGLFT-SPLLESIDLR----NNQLTGS-----ISNSISELVNLIDLSLSSNN--LSGNVELYMFAELKNLLG 400 (920)
Q Consensus 333 n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~ 400 (920)
+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|+.|+++.|. +++.........+++|++
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 9888766666665 8999999996 6677764 44557789999999998654 665555555556899999
Q ss_pred EEcCCCccccCccCCCCCCCCcCceEeeeccCCcC--CchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECC
Q 048289 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE--FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLS 478 (920)
Q Consensus 401 L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls 478 (920)
|++++|.+++.........+++|++|++++|.++. ++.....+++|+.|++++|++++.....+.. .++.+....+.
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~-~~p~l~~~~~~ 546 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM-ARPYWNIELIP 546 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG-CCTTEEEEEEC
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH-hCCCcEEEEec
Confidence 99999998765544445678999999999999763 5566778999999999999988765444432 45666555554
Q ss_pred CCcCcCcc----CCCCcccceEecccCcCCCCCCCCCCCCceEE
Q 048289 479 HNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFIS 518 (920)
Q Consensus 479 ~n~l~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~ 518 (920)
.+.-.... .......+.+.. .+.+.|..+..|+.+..|+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~p~~~~~l~ 589 (592)
T 3ogk_B 547 SRRVPEVNQQGEIREMEHPAHILA-YYSLAGQRTDCPTTVRVLK 589 (592)
T ss_dssp CC---------------CCCEEEE-EECTTCSCSCCCTTCEECC
T ss_pred CccccccccccCCcCCcchhheEe-eeecCCCccCCCCCeEecC
Confidence 43222111 111122333322 3345566666666766654
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.5e-26 Score=259.81 Aligned_cols=247 Identities=19% Similarity=0.219 Sum_probs=158.4
Q ss_pred cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF 571 (920)
Q Consensus 493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l 571 (920)
...++++++.++..+...++++++|++++|++++..+..|.++++|++|++++|.+++..+..+.... |++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 34556666666555545566777777777777777777777777777777777777655544444444 55555555555
Q ss_pred cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC-cccccCchhhcCCCCCCEEEccCceeecccCCC
Q 048289 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN-RINGTFPAWLGALSELQVLILRSNRFHGPITYS 650 (920)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 650 (920)
++..+..|..+++|++|+|++|+++...+..|.++++|++|++++| .+....+..|.+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------------- 194 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--------------------- 194 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT---------------------
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC---------------------
Confidence 5444444444555555555555554444444444455555555442 222222223333
Q ss_pred cccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEE
Q 048289 651 VTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730 (920)
Q Consensus 651 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 730 (920)
+++|+.|++++|++++. |. +. .++.|+.|+
T Consensus 195 -----l~~L~~L~L~~n~l~~~-~~--~~------------------------------------------~l~~L~~L~ 224 (452)
T 3zyi_A 195 -----LFNLKYLNLGMCNIKDM-PN--LT------------------------------------------PLVGLEELE 224 (452)
T ss_dssp -----CTTCCEEECTTSCCSSC-CC--CT------------------------------------------TCTTCCEEE
T ss_pred -----CCCCCEEECCCCccccc-cc--cc------------------------------------------ccccccEEE
Confidence 45556666666655532 21 00 135577888
Q ss_pred cCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccC
Q 048289 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVG 810 (920)
Q Consensus 731 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 810 (920)
|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|||++|++++..+..|..+++|+.|++++|++..
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88888888778888888888888888888888888888888888888888888888777788888888888888887654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.2e-26 Score=244.16 Aligned_cols=255 Identities=21% Similarity=0.195 Sum_probs=161.5
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc-c
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN-F 571 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~-l 571 (920)
+.++++++.++..+...++++++|++++|.+++..+..|..+++|++|++++|.+++..|..+...+ |++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 3455556665555444566777778888877777777788888888888888888776666666655 7777777776 6
Q ss_pred cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCc
Q 048289 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651 (920)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 651 (920)
....|..|..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 66656777777777777777777777667777777777777777777776666667777777777777777665443333
Q ss_pred ccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEc
Q 048289 652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731 (920)
Q Consensus 652 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 731 (920)
..+++|+.|++++|++++..|..+ .. ++.|+.|++
T Consensus 174 --~~l~~L~~L~l~~n~l~~~~~~~~-~~------------------------------------------l~~L~~L~l 208 (285)
T 1ozn_A 174 --RGLHSLDRLLLHQNRVAHVHPHAF-RD------------------------------------------LGRLMTLYL 208 (285)
T ss_dssp --TTCTTCCEEECCSSCCCEECTTTT-TT------------------------------------------CTTCCEEEC
T ss_pred --cCccccCEEECCCCcccccCHhHc-cC------------------------------------------cccccEeeC
Confidence 335566666666666655444221 10 234556666
Q ss_pred CCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccC
Q 048289 732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS 794 (920)
Q Consensus 732 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 794 (920)
++|.+++..+..+..+++|+.|+|++|++....+.. .-...++.++.+.+.+.+..|..+.+
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 666666555555666666666666666665443321 12233444455555555555555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=252.07 Aligned_cols=289 Identities=20% Similarity=0.199 Sum_probs=166.0
Q ss_pred CCCCCCCCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeC
Q 048289 31 ISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNL 110 (920)
Q Consensus 31 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~L 110 (920)
..|..+..+|.|.|+ |+ ++++.+. .+|. .+. ++|++|++++|.++.. .+..+.++++|++|++
T Consensus 21 ~~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L 83 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CK----------GSSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVL 83 (353)
T ss_dssp ------CCEECTTSE-EE----------CCSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred cCCCccCCCCCCCeE-ee----------CCCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEEC
Confidence 456667778999987 75 3455554 4554 333 5888899988888763 3346888888888888
Q ss_pred CCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCc
Q 048289 111 SVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCG 190 (920)
Q Consensus 111 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 190 (920)
++|.+++..|..++++++|++|++++|++.. ..+..+.++++|++|++++|.
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------------------~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSN----------------------------LSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSS----------------------------CCHHHHTTCTTCSEEECTTCC
T ss_pred CCCccCccCHhhcCCCCCCCEEECCCCcCCc----------------------------CCHhHhCCCccCCEEECCCCC
Confidence 8888887777778888888888888885542 233345666666666666666
Q ss_pred CCCCCC-cccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCc
Q 048289 191 LQGSIP-ENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP 268 (920)
Q Consensus 191 l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 268 (920)
+....+ ..+..+++|++|++++|..+....+ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---- 211 (353)
T 2z80_A 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---- 211 (353)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----
T ss_pred CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----
Confidence 663222 2556666666666666522222222 3344444444444444444444444444444444444444443
Q ss_pred ccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccc---cCCCcCceeeccCccccc----cCCc
Q 048289 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV---SRLHSLVTIYLSYNSLNG----TIPS 341 (920)
Q Consensus 269 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~----~~~~ 341 (920)
...+..+..+++|++|++++|.+++..+..+ .....++.+++.++.+.+ .+|.
T Consensus 212 --------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 212 --------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp --------------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred --------------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 2222222334444444444444443322221 123445555555555543 3556
Q ss_pred cccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcch
Q 048289 342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388 (920)
Q Consensus 342 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 388 (920)
.+..+++|++|++++|+++...+..+..+++|++|++++|++.+..+
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 66777777777777777774433345777788888888888776654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9e-26 Score=256.41 Aligned_cols=246 Identities=19% Similarity=0.212 Sum_probs=161.0
Q ss_pred cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF 571 (920)
Q Consensus 493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l 571 (920)
...++++++.++..+...+++++.|++++|++++..+..|.++++|++|++++|.+++..+..+.... |++|++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 34556666666655555566777777777777777777777777777777777777655555554444 55555555555
Q ss_pred cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc-ccccCchhhcCCCCCCEEEccCceeecccCCC
Q 048289 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR-INGTFPAWLGALSELQVLILRSNRFHGPITYS 650 (920)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 650 (920)
++..+..|..+++|+.|+|++|+++...+..|..+++|++|++++|+ +....+..|.+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------------- 183 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--------------------- 183 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT---------------------
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc---------------------
Confidence 54444455555555555555555554444455555555555555532 22222223444
Q ss_pred cccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEE
Q 048289 651 VTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730 (920)
Q Consensus 651 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 730 (920)
+++|+.|++++|+++. +|. +. .++.|+.||
T Consensus 184 -----l~~L~~L~L~~n~l~~-~~~--~~------------------------------------------~l~~L~~L~ 213 (440)
T 3zyj_A 184 -----LSNLRYLNLAMCNLRE-IPN--LT------------------------------------------PLIKLDELD 213 (440)
T ss_dssp -----CSSCCEEECTTSCCSS-CCC--CT------------------------------------------TCSSCCEEE
T ss_pred -----ccccCeecCCCCcCcc-ccc--cC------------------------------------------CCcccCEEE
Confidence 4455555555555542 221 00 135577888
Q ss_pred cCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV 809 (920)
Q Consensus 731 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 809 (920)
|++|.+++..|..|..+++|+.|+|++|++++..|..|.++++|++|||++|++++..+..|..+++|+.|++++|++.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8888888777888888888888888888888888888888888888888888888877778888888888888888865
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.8e-28 Score=260.89 Aligned_cols=203 Identities=23% Similarity=0.268 Sum_probs=147.0
Q ss_pred cceeecCCCcccccCCccc--cCCCcccEEEccCCccccccCccccCC-----CCCcEEECCCCcccccCchhhcCCCCC
Q 048289 561 LWFLDMRMNNFHGSIPQTF--SKGSRLTILNLNDNQLEGSVPLSLVNC-----SFLEVLDVGNNRINGTFPAWLGALSEL 633 (920)
Q Consensus 561 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L 633 (920)
|++|++++|++++.+|..+ ..+++|++|+|++|++++. |..+..+ ++|++|++++|++++..|..|+.+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 5555555555555555544 5666777777777777655 6666555 677777777777776666777777777
Q ss_pred CEEEccCceeeccc--CCCcccCCCCCCcEEEccCCcCcCC--CchHHHhhhhccccCCCCCCCCCcceeccCcceeeEE
Q 048289 634 QVLILRSNRFHGPI--TYSVTRFPFPKLRILDLSNNEFTGV--LPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709 (920)
Q Consensus 634 ~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (920)
++|++++|++.+.+ +.......+++|++|++++|++++. ++...+.
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------------------------ 225 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA------------------------------ 225 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH------------------------------
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh------------------------------
Confidence 77777777766542 2222224577888888888887731 1212111
Q ss_pred EEEccchhhhhhhcccccEEEcCCCcCCCCch-hhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccC
Q 048289 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP-EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI 788 (920)
Q Consensus 710 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i 788 (920)
.++.|+.|||++|.+++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|++|||++|++++.
T Consensus 226 ------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~- 289 (312)
T 1wwl_A 226 ------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN- 289 (312)
T ss_dssp ------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-
T ss_pred ------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-
Confidence 24568899999999998775 55677899999999999998 7788776 8999999999999987
Q ss_pred cccccCCCCCCeeeccCCcccCC
Q 048289 789 PWQLTSLNFLQVLNLSQNQLVGP 811 (920)
Q Consensus 789 p~~l~~l~~L~~L~ls~N~l~g~ 811 (920)
|. +..+++|++|++++|+++++
T Consensus 290 p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 290 PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hh-HhhCCCCCEEeccCCCCCCC
Confidence 66 89999999999999999864
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.7e-26 Score=249.14 Aligned_cols=223 Identities=22% Similarity=0.270 Sum_probs=145.5
Q ss_pred CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289 537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG 615 (920)
Q Consensus 537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 615 (920)
.++.|++++|.++ .+|..+.... |++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+.++++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444443 2333333333 444444444444 34444455555555555555555 445555555555555555
Q ss_pred CCcccccCchhhc---------CCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhcccc
Q 048289 616 NNRINGTFPAWLG---------ALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686 (920)
Q Consensus 616 ~N~l~~~~p~~l~---------~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 686 (920)
+|++.+.+|..+. ++++|++|++++|+++ .+|..+ ..+++|+.|++++|++++ +|.. +..
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~-l~~~-l~~------ 227 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSA-LGPA-IHH------ 227 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCC-CCGG-GGG------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCc-Cchh-hcc------
Confidence 5555555554443 3666666666666666 444433 446677777777777764 3332 111
Q ss_pred CCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCc
Q 048289 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPY 766 (920)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 766 (920)
++.|++|+|++|++.+.+|..++.+++|+.|+|++|.+.+.+|.
T Consensus 228 ------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 228 ------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp ------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred ------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 35678888888888888888889999999999999999999999
Q ss_pred ccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV 809 (920)
Q Consensus 767 ~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 809 (920)
.++++++|++|||++|++.+.+|..+.++++|+.++++.|.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999988877654
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=9.9e-26 Score=243.09 Aligned_cols=276 Identities=20% Similarity=0.197 Sum_probs=189.8
Q ss_pred EEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceeccc--CcccccCCCCcCeEeCCCCcC
Q 048289 474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGE--IPLSFCNMSSIFYVNLSNNSL 548 (920)
Q Consensus 474 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l 548 (920)
.++++++.++.++....+++++|++++|+++...+. ..++|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 445555555555544445566666666666544332 256777888888877633 366677788899999999988
Q ss_pred CCcCcccccccc-cceeecCCCcccccCC-ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccc-cCch
Q 048289 549 NGMIPPCLANSS-LWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING-TFPA 625 (920)
Q Consensus 549 ~~~~p~~~~~~~-L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~ 625 (920)
.+ +|..+...+ |++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ..|.
T Consensus 91 ~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 74 555566666 9999999999887765 678889999999999999998888889999999999999999987 5788
Q ss_pred hhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289 626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY 705 (920)
Q Consensus 626 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 705 (920)
.+..+++|++|++++|++++..|..+ ..+++|+.|++++|++++..+.. +.
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~-------------------------- 220 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFP-YK-------------------------- 220 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCSBCCSGG-GT--------------------------
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccCccChhh-cc--------------------------
Confidence 88888888888888888877666554 34667777777777776543321 11
Q ss_pred eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhcc-CCCceEeccCccccCCcC--cccccccCCccccCCCC
Q 048289 706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKL-NSLKGLNFSHNKLTGLIP--YSLENLTQLESLDLSSN 782 (920)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip--~~~~~l~~L~~L~Ls~N 782 (920)
.++.|+.||+++|.+++..|..+..+ ++|+.|+|++|++++..+ .-..-+...+.+.+..+
T Consensus 221 ----------------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~ 284 (306)
T 2z66_A 221 ----------------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284 (306)
T ss_dssp ----------------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGG
T ss_pred ----------------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccc
Confidence 13455666777777766666666666 366777777776665432 11223444555556666
Q ss_pred cccccCcccccCC
Q 048289 783 KVAGEIPWQLTSL 795 (920)
Q Consensus 783 ~l~g~ip~~l~~l 795 (920)
.+.+..|..+.+.
T Consensus 285 ~~~C~~p~~~~g~ 297 (306)
T 2z66_A 285 RMECATPSDKQGM 297 (306)
T ss_dssp GCBEEESGGGTTC
T ss_pred ccccCCchhhCCc
Confidence 6666666655543
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.6e-27 Score=253.81 Aligned_cols=246 Identities=22% Similarity=0.264 Sum_probs=183.5
Q ss_pred cccceEecccCcCCCCCCC-CCCCCceEEecCcee-cccCccccc-------CCCCcCeEeCCCCcCCCcCcccc--ccc
Q 048289 491 KNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKL-SGEIPLSFC-------NMSSIFYVNLSNNSLNGMIPPCL--ANS 559 (920)
Q Consensus 491 ~~L~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~~ 559 (920)
++|+.+++++|.+ .+|. .+..++.|++++|.+ ...+|..+. ++++|++|++++|++++.+|..+ ...
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4566777777776 3332 234477778888877 345565554 67888888888888887777765 555
Q ss_pred c-cceeecCCCcccccCCccccCC-----CcccEEEccCCccccccCccccCCCCCcEEECCCCccccc--Cchhh--cC
Q 048289 560 S-LWFLDMRMNNFHGSIPQTFSKG-----SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT--FPAWL--GA 629 (920)
Q Consensus 560 ~-L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~l--~~ 629 (920)
+ |++|++++|++++. |..+..+ ++|++|++++|++++..|..|..+++|++|++++|++.+. .|..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 5 88888888888877 6666665 7888888888888887778888888888888888887765 23344 78
Q ss_pred CCCCCEEEccCceeecc--cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceee
Q 048289 630 LSELQVLILRSNRFHGP--ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYS 707 (920)
Q Consensus 630 l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 707 (920)
+++|++|++++|++++. ++... ...+++|+.|++++|++++.+|...+.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------- 250 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNSLRDAAGAPSCD---------------------------- 250 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSCCCSSCCCSCCC----------------------------
T ss_pred CCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCcCCcccchhhhh----------------------------
Confidence 88888899988888732 11111 124678999999999988866522111
Q ss_pred EEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccccc
Q 048289 708 AILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE 787 (920)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ 787 (920)
.++.|+.|+|++|.++ .+|..+. ++|+.|+|++|++++. |. +..+++|++|++++|++++.
T Consensus 251 --------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 251 --------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred --------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 1356889999999998 7787776 8899999999999987 66 89999999999999998864
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.1e-25 Score=254.91 Aligned_cols=285 Identities=22% Similarity=0.279 Sum_probs=181.2
Q ss_pred CcccCCCCCCCCCccccceEec------CCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCC
Q 048289 27 YSKMISWKEEKDCCSWDGVTCD------MMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFT 100 (920)
Q Consensus 27 ~~~l~~w~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~ 100 (920)
+...+.|....+||.|+|..|. .....++.|+++++.+. .+|. .+. ++|++|+|++|.++. +|.
T Consensus 9 ~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~--- 78 (622)
T 3g06_A 9 DAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA--- 78 (622)
T ss_dssp -CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---
T ss_pred HHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---
Confidence 3466788878899999764321 11235888999999887 6665 443 788899999888875 665
Q ss_pred CCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCC
Q 048289 101 RFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSS 180 (920)
Q Consensus 101 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 180 (920)
.+++|++|+|++|.++ .+|. .+++|++|++++|.+..++. .+++|++|++++|.++.. |.. +++
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~l-p~~---l~~ 142 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSL-PVL---PPG 142 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCC-CCC---CTT
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcC-CCC---CCC
Confidence 5788888888888887 4665 67888888888887665432 345556666655555432 221 245
Q ss_pred CCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcC
Q 048289 181 LTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSY 260 (920)
Q Consensus 181 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 260 (920)
|++|++++|.+++ +|. ..++|+.|++++|.+++ +| ..+++|+.|++++
T Consensus 143 L~~L~Ls~N~l~~-l~~---------------------------~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 143 LQELSVSDNQLAS-LPA---------------------------LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSD 190 (622)
T ss_dssp CCEEECCSSCCSC-CCC---------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred CCEEECcCCcCCC-cCC---------------------------ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCC
Confidence 5555555555542 222 12344555555555543 33 3345666666666
Q ss_pred CcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCC
Q 048289 261 NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340 (920)
Q Consensus 261 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 340 (920)
|.+++ +|. ..++|+.|++++|.++. +|. .+++|+.|++++|++++ +| ..+++|++|++++|.++ .+|
T Consensus 191 N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp 257 (622)
T 3g06_A 191 NQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP 257 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred CCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCC
Confidence 66663 332 23566667777766663 332 23667777777777664 33 34567777777777776 455
Q ss_pred ccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCc
Q 048289 341 SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386 (920)
Q Consensus 341 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 386 (920)
. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 4 4567777888877777 5566777778888888888877743
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.9e-24 Score=250.69 Aligned_cols=175 Identities=26% Similarity=0.317 Sum_probs=91.9
Q ss_pred cccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCce
Q 048289 444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNK 523 (920)
Q Consensus 444 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~ 523 (920)
..++.|++++|.++ .+|..+. ++|++|++++|.++.++. .+++|++|++++|++++.. ..+++|++|++++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCC-CCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCC-CCCCCCCEEECcCCc
Confidence 35777777777776 5555432 567777777777766555 4566666666666665432 255566666666666
Q ss_pred ecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccc
Q 048289 524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL 603 (920)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 603 (920)
+++. |. .+++|+.|++++|++++ +|..+ ..|+.|++++|++++. |. .+++|+.|++++|.+++ +|
T Consensus 113 l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~--- 177 (622)
T 3g06_A 113 LTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP--- 177 (622)
T ss_dssp CCCC-CC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---
T ss_pred CCCC-CC---CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---
Confidence 5542 22 34555666666665553 33221 2255555555555432 22 12345555555555543 33
Q ss_pred cCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289 604 VNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644 (920)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 644 (920)
..+++|+.|++++|++++ +|. .+++|+.|++++|.++
T Consensus 178 ~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc
Confidence 233455555555555543 222 1244455555555444
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.9e-24 Score=230.41 Aligned_cols=264 Identities=18% Similarity=0.156 Sum_probs=198.3
Q ss_pred cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCc-C
Q 048289 473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS-L 548 (920)
Q Consensus 473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 548 (920)
++++.+++.++.++....+++++|++++|.+++..+. ..++|++|++++|.+++..|..|..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 4555555555555544455666666666666655432 25678888888888888878888888999999999987 7
Q ss_pred CCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh
Q 048289 549 NGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL 627 (920)
Q Consensus 549 ~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 627 (920)
.+..|..+...+ |++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 666677777766 9999999999988888888889999999999999987777778888999999999999987777778
Q ss_pred cCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceee
Q 048289 628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYS 707 (920)
Q Consensus 628 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 707 (920)
..+++|++|++++|++.+..|..+ ..+++|+.|++++|++++..+ ..+..
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~--------------------------- 223 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPT-EALAP--------------------------- 223 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCH-HHHTT---------------------------
T ss_pred cCccccCEEECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCCH-HHccc---------------------------
Confidence 889999999999999888777665 457889999999998886443 33322
Q ss_pred EEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCccccc--ccCCccccCCCC
Q 048289 708 AILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLEN--LTQLESLDLSSN 782 (920)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--l~~L~~L~Ls~N 782 (920)
++.|+.|++++|.+....+.. .-...++.+..+.+.+....|+.+.+ +..++..++.+|
T Consensus 224 ---------------l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 224 ---------------LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ---------------CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ---------------CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 356788999999888654421 12234555667888888888887754 556666666654
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=6.5e-24 Score=241.96 Aligned_cols=229 Identities=26% Similarity=0.262 Sum_probs=120.3
Q ss_pred CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCC
Q 048289 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT 182 (920)
Q Consensus 103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 182 (920)
++|++|+|++|.+++..|..+.++++|++|++++|.+..+.. ..+.++++|++|++++|.++...+..|..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV----GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh----hhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 355555555555554445555555555555555554332111 1122233333333333333334444455556666
Q ss_pred EEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCc
Q 048289 183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNN 262 (920)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 262 (920)
+|++++|.+....+..+..+++|++|++++|..+... .+..+..+++|++|++++|.
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----------------------~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----------------------SEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------CTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----------------------ChhhccCCCCCCEEECCCCc
Confidence 6666666655444445555555555555554222211 12234555555555555555
Q ss_pred CCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCcc
Q 048289 263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342 (920)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (920)
+++. | .+..+++|++|++++|.+++..|..|..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..
T Consensus 208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 5532 2 3555566666666666666555556666666666666666666555556666666666666666665444444
Q ss_pred ccCCCCCCEEEccCCCCC
Q 048289 343 LFTSPLLESIDLRNNQLT 360 (920)
Q Consensus 343 l~~l~~L~~L~L~~n~l~ 360 (920)
+..+++|+.|++++|.+.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 555666666666666554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=8e-27 Score=252.54 Aligned_cols=245 Identities=22% Similarity=0.190 Sum_probs=175.9
Q ss_pred CCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEc
Q 048289 512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNL 590 (920)
Q Consensus 512 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 590 (920)
++|++|++++|++++..|..|..+++|++|++++|.+++..+ +...+ |++|++++|++++.. ..++|+.|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 456666666676666666677777777777777777765443 44444 777777777776433 2367777777
Q ss_pred cCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCc
Q 048289 591 NDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670 (920)
Q Consensus 591 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 670 (920)
++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++.+..+..+. ..+++|+.|++++|.++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCc
Confidence 777777654433 46677777777777776666777777777777777777765444331 23577888888888776
Q ss_pred CCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCC
Q 048289 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL 750 (920)
Q Consensus 671 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L 750 (920)
+. |... .++.|++|+|++|.+++ +|..+..+++|
T Consensus 183 ~~-~~~~--------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 216 (317)
T 3o53_A 183 DV-KGQV--------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (317)
T ss_dssp EE-ECCC--------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred cc-cccc--------------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcc
Confidence 43 1100 13567888999998885 44558889999
Q ss_pred ceEeccCccccCCcCcccccccCCccccCCCCccc-ccCcccccCCCCCCeeeccC-CcccCCCCC
Q 048289 751 KGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA-GEIPWQLTSLNFLQVLNLSQ-NQLVGPIPQ 814 (920)
Q Consensus 751 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls~-N~l~g~iP~ 814 (920)
+.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus 217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999984 6888888999999999999998 78888888999999999985 467877664
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=235.60 Aligned_cols=246 Identities=26% Similarity=0.291 Sum_probs=131.9
Q ss_pred EEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcC
Q 048289 56 GLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS 135 (920)
Q Consensus 56 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls 135 (920)
.++.++..+. .+|. .+. +++++|+|++|.+... .+..|.++++|++|+|++|.+++..+..+.++++|++|+++
T Consensus 47 ~v~c~~~~l~-~iP~--~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 47 KVICVRKNLR-EVPD--GIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp EEECCSCCCS-SCCS--CCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred EEEeCCCCcC-cCCC--CCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4555555554 3443 222 4566666666665543 33455566666666666666655444555555555555555
Q ss_pred CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC
Q 048289 136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN 215 (920)
Q Consensus 136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 215 (920)
+|++ +...+..|..+++|++|++++|.+....+..+..+++|++|++++|..
T Consensus 121 ~n~l----------------------------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 121 DNRL----------------------------TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp SSCC----------------------------SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred CCcC----------------------------CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC
Confidence 5543 333334455556666666666665544444555556666666555422
Q ss_pred CCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhh
Q 048289 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF 295 (920)
Q Consensus 216 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 295 (920)
+... .+..|.++++|++|++++|.++. +| .+..+++|++|++++|.+++..|..|
T Consensus 173 l~~i-----------------------~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 173 LSYI-----------------------SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp CCEE-----------------------CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ccee-----------------------CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhh
Confidence 2211 12234445555555555555542 22 24555555555555555555555555
Q ss_pred hcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCC
Q 048289 296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360 (920)
Q Consensus 296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 360 (920)
..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55555555666555555555555555666666666666665444444555666666666666554
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.6e-25 Score=239.53 Aligned_cols=244 Identities=20% Similarity=0.169 Sum_probs=202.6
Q ss_pred CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEcc
Q 048289 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLN 591 (920)
Q Consensus 513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 591 (920)
+++..+++.+.+....+..+..+++|++|++++|.+++..|..+...+ |+.|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 345567777777666666677788999999999999988888888877 9999999999987765 8899999999999
Q ss_pred CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671 (920)
Q Consensus 592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 671 (920)
+|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..+ ..+++|+.|++++|++++
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCc
Confidence 99998533 3489999999999999776543 6889999999999998766554 457899999999999997
Q ss_pred CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc
Q 048289 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751 (920)
Q Consensus 672 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~ 751 (920)
..|..+... ++.|++|+|++|.+++. |. ...+++|+
T Consensus 159 ~~~~~~~~~------------------------------------------l~~L~~L~L~~N~l~~~-~~-~~~l~~L~ 194 (317)
T 3o53_A 159 VNFAELAAS------------------------------------------SDTLEHLNLQYNFIYDV-KG-QVVFAKLK 194 (317)
T ss_dssp EEGGGGGGG------------------------------------------TTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred ccHHHHhhc------------------------------------------cCcCCEEECCCCcCccc-cc-ccccccCC
Confidence 665443221 35689999999999865 33 34589999
Q ss_pred eEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc-CCCCC
Q 048289 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV-GPIPQ 814 (920)
Q Consensus 752 ~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~ 814 (920)
.|+|++|++++. |..+..+++|++|+|++|++++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 195 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred EEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 999999999975 4559999999999999999994 7888999999999999999998 55553
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-25 Score=255.54 Aligned_cols=234 Identities=22% Similarity=0.186 Sum_probs=140.7
Q ss_pred CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEcc
Q 048289 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLN 591 (920)
Q Consensus 513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 591 (920)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +...+ |+.|++++|.+++..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 55666666666666556666666666666666666665444 44444 6666666666654332 2556666666
Q ss_pred CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671 (920)
Q Consensus 592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 671 (920)
+|.+++..+.. +++|+.|++++|++++..|..++.+++|++|++++|.+++..|..+. ..+++|+.|+|++|.+++
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcccc
Confidence 66666544432 35566666666666666566666666666666666666655444331 134566666666666654
Q ss_pred CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc
Q 048289 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751 (920)
Q Consensus 672 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~ 751 (920)
..+.. .++.|+.|+|++|.+++..| .++.+++|+
T Consensus 184 ~~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 217 (487)
T 3oja_A 184 VKGQV---------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT 217 (487)
T ss_dssp EECCC---------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred ccccc---------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCcc
Confidence 31100 03456667777777765333 366777777
Q ss_pred eEeccCccccCCcCcccccccCCccccCCCCccc-ccCcccccCCCCCCeeecc
Q 048289 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA-GEIPWQLTSLNFLQVLNLS 804 (920)
Q Consensus 752 ~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls 804 (920)
.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777775 5666677777777777777776 5666666666666666665
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.5e-23 Score=219.43 Aligned_cols=226 Identities=22% Similarity=0.237 Sum_probs=180.4
Q ss_pred EeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCccc
Q 048289 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620 (920)
Q Consensus 541 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 620 (920)
.+..+..++ .+|..+. ..+++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+++
T Consensus 12 ~~c~~~~l~-~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCS-SCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCcc-ccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 344444443 3444332 23788888888888777778888888999999999888777778888889999999999988
Q ss_pred ccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCC-CchHHHhhhhccccCCCCCCCCCccee
Q 048289 621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV-LPTRYFQNFQAMMHGNNNSAEGGNMYI 699 (920)
Q Consensus 621 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~~~~~~~~~~~~~~ 699 (920)
+..+..|.++++|++|++++|++.+..+..+ ..+++|+.|++++|++++. +|..+ .+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~-~~------------------- 147 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYF-SN------------------- 147 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGG-GG-------------------
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchhh-cc-------------------
Confidence 8888888888999999999998887655443 5678899999999988763 45332 21
Q ss_pred ccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc----eEeccCccccCCcCcccccccCCc
Q 048289 700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK----GLNFSHNKLTGLIPYSLENLTQLE 775 (920)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~l~~L~ 775 (920)
++.|++|++++|++++..+..+..+..|+ .|++++|++++..+..+.. .+|+
T Consensus 148 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~ 203 (276)
T 2z62_A 148 -----------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLK 203 (276)
T ss_dssp -----------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEE
T ss_pred -----------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Cccc
Confidence 45688999999999988888888887777 8999999999877766654 4899
Q ss_pred cccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCC
Q 048289 776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 776 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 814 (920)
+|++++|++++..+..|.++++|+.|++++|++.+..|.
T Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred EEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 999999999988888889999999999999999988774
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-24 Score=245.52 Aligned_cols=222 Identities=21% Similarity=0.190 Sum_probs=188.3
Q ss_pred CCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEE
Q 048289 535 MSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD 613 (920)
Q Consensus 535 l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 613 (920)
+++|+.|++++|.+++..|..+...+ |+.|+|++|.+++..| +..+++|+.|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 44899999999999998888888877 9999999999998776 8899999999999999986443 38999999
Q ss_pred CCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCC
Q 048289 614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAE 693 (920)
Q Consensus 614 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~ 693 (920)
+++|.+++..+. .+++|+.|++++|.+++..|..+ ..+++|+.|++++|.+++.+|..+...
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------------- 167 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------------- 167 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG-------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh-------------
Confidence 999999977664 46889999999999998877665 457899999999999998777553222
Q ss_pred CCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccC
Q 048289 694 GGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQ 773 (920)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 773 (920)
++.|+.|+|++|.+++..+ +..+++|+.|+|++|.+++.+| .+..+++
T Consensus 168 -----------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~ 215 (487)
T 3oja_A 168 -----------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (487)
T ss_dssp -----------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred -----------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCC
Confidence 4568999999999997633 4469999999999999998655 5999999
Q ss_pred CccccCCCCcccccCcccccCCCCCCeeeccCCccc-CCCCC
Q 048289 774 LESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV-GPIPQ 814 (920)
Q Consensus 774 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~ 814 (920)
|+.|||++|++++ +|..+..+++|+.|++++|++. |.+|.
T Consensus 216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 9999999999996 7888999999999999999987 55553
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=6.3e-26 Score=269.02 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=52.6
Q ss_pred ccCCCCcCeEeCCCCcCCCcCcccccc-cc-cceeecCCCcccccCCccc-cCCCcccEEEccCCccccccCc-cccCCC
Q 048289 532 FCNMSSIFYVNLSNNSLNGMIPPCLAN-SS-LWFLDMRMNNFHGSIPQTF-SKGSRLTILNLNDNQLEGSVPL-SLVNCS 607 (920)
Q Consensus 532 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~-L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~ 607 (920)
+..+++|+.|++++ .+++..+..+.. .+ |+.|++++|.+++.....+ ..+++|+.|+|++|.+++.... ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455666666654 443322222221 22 5555555555443322222 3456666666666666433332 233456
Q ss_pred CCcEEECCCCcccccCchhh-cCCCCCCEEEccCc
Q 048289 608 FLEVLDVGNNRINGTFPAWL-GALSELQVLILRSN 641 (920)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N 641 (920)
+|++|++++|+++......+ ..+++|++..+..+
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 66666666666643333333 34555555444443
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=2.7e-26 Score=272.22 Aligned_cols=400 Identities=18% Similarity=0.154 Sum_probs=222.2
Q ss_pred CCCCCCEEECCCCCCCCCCCCCcCC-CCCCCCEEeCCCC-CCccc-CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHh
Q 048289 76 SLPHLQILNLAFNDFNYSYISPGFT-RFPNLAHLNLSVS-SFSGQ-IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ 152 (920)
Q Consensus 76 ~l~~L~~L~Ls~~~~~~~~i~~~~~-~l~~L~~L~Ls~n-~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~ 152 (920)
.+++|++|+|++|.+++. .+..+. .+++|++|+|++| .+++. ++..+.++++|++|++++|.+.......+.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 566777777777766543 222232 5677777777776 34322 3333446777777777777655444444444455
Q ss_pred cCCCCCEEEcCCCC--CCCC-cchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC------CCcCCCCc
Q 048289 153 NLNELQELVLNSVD--MSYE-VPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN------LTSVFPKV 223 (920)
Q Consensus 153 ~l~~L~~L~L~~~~--~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~------~~~~~~~~ 223 (920)
.+++|++|++++|. ++.. +...+..+++|++|++++|...+.++..+..+++|++|+++.+.. +.+..+.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 66777777777765 2211 112234467777777777632223555566677777777655421 11111145
Q ss_pred CCCCCCCEE-EccCCcCcccccccccCCCCCCEEeCcCCcCCccC-cccccCCCCCCEEEccCCcCcc-cchhhhhcCCC
Q 048289 224 NWSSPLRFM-DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI-PSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQ 300 (920)
Q Consensus 224 ~~l~~L~~L-~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~ 300 (920)
..+++|+.+ .+.... .+.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +.. .++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 566667766 333222 2234444456677777777777755332 222456777777777776 332 22333335677
Q ss_pred CCEEECcC---------CCCCCcccccc-cCCCcCceeeccCccccccCCcccc-CCCCCCEEEcc--C----CCCCCC-
Q 048289 301 LSFLDFSN---------NQLNGPISSSV-SRLHSLVTIYLSYNSLNGTIPSGLF-TSPLLESIDLR--N----NQLTGS- 362 (920)
Q Consensus 301 L~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~- 362 (920)
|++|++.+ +.+++.....+ ..+++|++|.+..+.+++..+..+. .+++|++|+++ + +.+++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 77777732 34433222222 2367777777766666644444443 36777777777 3 344421
Q ss_pred ----chhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcC--C
Q 048289 363 ----ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE--F 436 (920)
Q Consensus 363 ----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--l 436 (920)
++..+..+++|+.|++++ .+++.........+++|+.|++++|.+++.........+++|++|++++|.++. +
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 122355677777777766 554333333333477777777777776544332222346777788887777742 2
Q ss_pred chhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCC
Q 048289 437 PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN 480 (920)
Q Consensus 437 p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 480 (920)
......+++|+.|++++|+++......+. ..++.++...+..+
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLNVEVIDER 541 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEEEEEECSS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCEEEEecCC
Confidence 23445577888888888876432222221 14566655555544
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=4e-22 Score=210.27 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=128.1
Q ss_pred CCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCc
Q 048289 37 KDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116 (920)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~ 116 (920)
.++|.|.|+.|... +.++.++++++.+. .+|. .+. ++|++|+|++|.+... .+..|..+++|++|++++|.++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 47899999999743 45678999998887 4554 332 5788888888887653 3346777888888888888777
Q ss_pred ccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCC
Q 048289 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIP 196 (920)
Q Consensus 117 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 196 (920)
...+..+.++++|++|++++|++.. ..+..+..+++|++|++++|.+++..+
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~----------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQA----------------------------LPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCC----------------------------CCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred eeChhhhcCCCCCCEEECCCCcCCc----------------------------CCHhHcccccCCCEEECCCCccCeeCH
Confidence 4444445667777777777775443 233344555666666666666554444
Q ss_pred cccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCC
Q 048289 197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ 276 (920)
Q Consensus 197 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 276 (920)
..+..+++|++|++++| .+ .+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 127 ~~~~~l~~L~~L~Ls~n-~l-----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYN-EL-----------------------QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTTCTTCCEEECCSS-CC-----------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhCcCcCCCEEECCCC-cC-----------------------CccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 44555555555555555 22 2222233444444455555554444443444445555
Q ss_pred CCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289 277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312 (920)
Q Consensus 277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (920)
|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 555555555555444444555555555555555543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.2e-22 Score=215.26 Aligned_cols=227 Identities=22% Similarity=0.218 Sum_probs=140.2
Q ss_pred EecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCccccc
Q 048289 496 LDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGS 574 (920)
Q Consensus 496 L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~ 574 (920)
++..+..+...+...++++++|++++|++++..+..|.++++|++|++++|++++..+..+...+ |++|++++|.+++.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 34444444444444456677777777777766666777777777777777777655444444444 55555555555555
Q ss_pred CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCccccc-CchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289 575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT-FPAWLGALSELQVLILRSNRFHGPITYSVTR 653 (920)
Q Consensus 575 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 653 (920)
.+..|..+++|++|++++|++++..+..+..+++|++|++++|++++. +|..+..+
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l----------------------- 148 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----------------------- 148 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-----------------------
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC-----------------------
Confidence 555555555555555555555544444455555555555555555432 34444444
Q ss_pred CCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhccccc-EEEcC
Q 048289 654 FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFT-TIDLS 732 (920)
Q Consensus 654 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls 732 (920)
++|+.|++++|++++..+. .+..+..+ +.+. .|+++
T Consensus 149 ---~~L~~L~Ls~N~l~~~~~~-~~~~l~~L---------------------------------------~~l~l~L~ls 185 (276)
T 2z62_A 149 ---TNLEHLDLSSNKIQSIYCT-DLRVLHQM---------------------------------------PLLNLSLDLS 185 (276)
T ss_dssp ---TTCCEEECCSSCCCEECGG-GGHHHHTC---------------------------------------TTCCEEEECC
T ss_pred ---CCCCEEECCCCCCCcCCHH-Hhhhhhhc---------------------------------------cccceeeecC
Confidence 4555555555555543332 22332222 1222 78999
Q ss_pred CCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289 733 GNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789 (920)
Q Consensus 733 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 789 (920)
+|.+++..+..+. ..+|+.|+|++|++++..+..|+.+++|++|++++|++++..|
T Consensus 186 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 186 LNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999865555444 4589999999999998878888999999999999999987654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-21 Score=206.44 Aligned_cols=206 Identities=26% Similarity=0.317 Sum_probs=135.4
Q ss_pred CcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289 537 SIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616 (920)
Q Consensus 537 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (920)
..+.++++++.++. +|..+. ..++.|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 34566666666653 343322 2255666666666555555566666666666666666544444455566666666666
Q ss_pred CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289 617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696 (920)
Q Consensus 617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 696 (920)
|++++..+..|..+++| +.|++++|++++..|.. +..
T Consensus 95 n~l~~~~~~~~~~l~~L--------------------------~~L~l~~n~l~~~~~~~-~~~---------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNL--------------------------AELRLDRNQLKSLPPRV-FDS---------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSC--------------------------CEEECCSSCCCCCCTTT-TTT----------------
T ss_pred CcCCcCCHhHcccccCC--------------------------CEEECCCCccCeeCHHH-hCc----------------
Confidence 66654444444444444 44445444444332211 111
Q ss_pred ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcc
Q 048289 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES 776 (920)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~ 776 (920)
++.|++|+|++|.+++..+..|+.+++|+.|+|++|++++..+..|..+++|++
T Consensus 132 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 132 --------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp --------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 355677888888888766667888889999999999998888888888999999
Q ss_pred ccCCCCcccccCcccccCCCCCCeeeccCCcccCCCC
Q 048289 777 LDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813 (920)
Q Consensus 777 L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 813 (920)
|+|++|++++..+..|..+++|+.|++++|++...-+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999998777788889999999999998876543
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.3e-23 Score=221.82 Aligned_cols=205 Identities=22% Similarity=0.236 Sum_probs=152.2
Q ss_pred cceeecCCCcccccCCccc--cCCCcccEEEccCCccccccC----ccccCCCCCcEEECCCCcccccCchhhcCCCCCC
Q 048289 561 LWFLDMRMNNFHGSIPQTF--SKGSRLTILNLNDNQLEGSVP----LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ 634 (920)
Q Consensus 561 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 634 (920)
|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|++.+..|..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 6677777777776666666 677777777777777776444 3345677788888888888777777777888888
Q ss_pred EEEccCceeecc--cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEE
Q 048289 635 VLILRSNRFHGP--ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTV 712 (920)
Q Consensus 635 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (920)
+|++++|++.+. ++.......+++|++|++++|+++. +|.....
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--------------------------------- 218 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA--------------------------------- 218 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH---------------------------------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH---------------------------------
Confidence 888888876653 2222222457889999999998863 2221100
Q ss_pred ccchhhhhhhcccccEEEcCCCcCCCCchhhhhcc---CCCceEeccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289 713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKL---NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789 (920)
Q Consensus 713 ~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 789 (920)
....++.|++|||++|.+++.+|+.++.+ ++|+.|+|++|+++ .+|..+. ++|++|||++|++++. |
T Consensus 219 ------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 219 ------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp ------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred ------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 01124678999999999999888888887 69999999999999 6687775 8999999999999975 3
Q ss_pred ccccCCCCCCeeeccCCcccC
Q 048289 790 WQLTSLNFLQVLNLSQNQLVG 810 (920)
Q Consensus 790 ~~l~~l~~L~~L~ls~N~l~g 810 (920)
. +..++.|+.|++++|+++.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 6788999999999999874
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.5e-22 Score=210.94 Aligned_cols=203 Identities=22% Similarity=0.217 Sum_probs=139.0
Q ss_pred cCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcE
Q 048289 533 CNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611 (920)
Q Consensus 533 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 611 (920)
..+++|+.|++++|.++. ++ .+...+ |++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344555555555555542 22 233333 66666666666542 35677788888888888888777777888888888
Q ss_pred EECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCC
Q 048289 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNS 691 (920)
Q Consensus 612 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~ 691 (920)
|++++|++++..+..+..+++|++|++++|++++..+..+ ..+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l----------------------------------- 156 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKL----------------------------------- 156 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTC-----------------------------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccC-----------------------------------
Confidence 8888888887777778888888888888887764333221 122
Q ss_pred CCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccc
Q 048289 692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL 771 (920)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 771 (920)
+.|+.|++++|++++..|..++.+++|+.|+|++|++++..|..++.+
T Consensus 157 --------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 157 --------------------------------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp --------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred --------------------------------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence 334556666666665555566777777777777777777777777777
Q ss_pred cCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCC
Q 048289 772 TQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815 (920)
Q Consensus 772 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 815 (920)
++|++|++++|.+.+..| .|++++++.|+++|.||..
T Consensus 205 ~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 205 TSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred cCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 888888888887776544 5777888888888888864
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.8e-23 Score=228.11 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=42.9
Q ss_pred cccEEEcCCCcCCCC----chhhhhcc-CCCceEeccCccccCCcCc----ccccccCCccccCCCCcccccC-------
Q 048289 725 IFTTIDLSGNKFQGR----IPEVVGKL-NSLKGLNFSHNKLTGLIPY----SLENLTQLESLDLSSNKVAGEI------- 788 (920)
Q Consensus 725 ~l~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~ip~----~~~~l~~L~~L~Ls~N~l~g~i------- 788 (920)
.|++|||++|.+++. ++..+..+ ++|+.|+|++|.+++..+. .+..+++|++|+|++|.+.+..
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 445555555555542 33344432 3555555555555544332 2234455555555555533322
Q ss_pred cccccCCCCCCeeeccCCcccCC
Q 048289 789 PWQLTSLNFLQVLNLSQNQLVGP 811 (920)
Q Consensus 789 p~~l~~l~~L~~L~ls~N~l~g~ 811 (920)
+..+..++.|+.||+++|++.+.
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 22445555566666666655443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.6e-22 Score=210.78 Aligned_cols=219 Identities=19% Similarity=0.236 Sum_probs=173.1
Q ss_pred ccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCC-CCCCCCceEEecCc
Q 048289 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIP-FLPPSLNFISVSNN 522 (920)
Q Consensus 445 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~~n 522 (920)
.+..+++..+.+.+..... .+++|+.|++++|.++.+.. ..+++|++|++++|.+.+... ..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~~----~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHH----HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccccc----cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence 3444455555444332211 44566666666666665543 345667777777777665321 23578888999999
Q ss_pred eecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCc
Q 048289 523 KLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601 (920)
Q Consensus 523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 601 (920)
.+++..+..|..+++|++|++++|++++..+..+...+ |++|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 98888888889999999999999999987777777766 99999999999988888889999999999999999988888
Q ss_pred cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchH
Q 048289 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTR 676 (920)
Q Consensus 602 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 676 (920)
.+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+++|+.++++.|.++|.+|..
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccCc
Confidence 88999999999999999998888889999999999999998874 4668899999999999999865
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.5e-23 Score=226.26 Aligned_cols=260 Identities=17% Similarity=0.179 Sum_probs=189.5
Q ss_pred EecccCcCCCCCCC---CCCCCceEEecCceecccCc----ccccCCC-CcCeEeCCCCcCCCcCccccccc-----c-c
Q 048289 496 LDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIP----LSFCNMS-SIFYVNLSNNSLNGMIPPCLANS-----S-L 561 (920)
Q Consensus 496 L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~~-----~-L 561 (920)
++++.|.+.+.+|. .+++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+... . |
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45556666655443 24568888888888887766 6777888 89999999999887766666653 4 9
Q ss_pred ceeecCCCcccccCCccc----cCC-CcccEEEccCCccccccCcccc----C-CCCCcEEECCCCcccccC----chhh
Q 048289 562 WFLDMRMNNFHGSIPQTF----SKG-SRLTILNLNDNQLEGSVPLSLV----N-CSFLEVLDVGNNRINGTF----PAWL 627 (920)
Q Consensus 562 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~----p~~l 627 (920)
++|++++|.+++..+..+ ..+ ++|+.|+|++|++++..+..+. . .++|++|++++|++++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999887766543 344 7899999999999876665543 3 368999999999998644 3445
Q ss_pred cCCC-CCCEEEccCceeecccCCCccc--CCC-CCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCc
Q 048289 628 GALS-ELQVLILRSNRFHGPITYSVTR--FPF-PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGN 703 (920)
Q Consensus 628 ~~l~-~L~~L~L~~N~l~~~~~~~~~~--~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 703 (920)
..++ +|++|+|++|++++..+..+.. ..+ ++|+.|||++|.+++.........+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-------------------- 222 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-------------------- 222 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------
Confidence 5665 8999999999987655433211 133 589999999999886543322221111
Q ss_pred ceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchh----hhhccCCCceEeccCccccCCcC-------ccccccc
Q 048289 704 EYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE----VVGKLNSLKGLNFSHNKLTGLIP-------YSLENLT 772 (920)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~----~l~~l~~L~~L~Ls~N~l~~~ip-------~~~~~l~ 772 (920)
..+.|++|||++|.+++..+. .+..+++|+.|+|++|.+.+..+ ..+..++
T Consensus 223 ------------------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 223 ------------------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp ------------------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred ------------------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 134789999999999986653 44677999999999999665543 4677889
Q ss_pred CCccccCCCCcccccCccccc
Q 048289 773 QLESLDLSSNKVAGEIPWQLT 793 (920)
Q Consensus 773 ~L~~L~Ls~N~l~g~ip~~l~ 793 (920)
+|++||+++|++.+..|..+.
T Consensus 285 ~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 285 KIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp EEEEECTTSCBCCGGGCHHHH
T ss_pred ceEEEecCCCcCCCcchHHHH
Confidence 999999999999887665443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.2e-23 Score=229.47 Aligned_cols=196 Identities=19% Similarity=0.179 Sum_probs=139.6
Q ss_pred cCCCcccEEEccCCcccc----ccCccccCCCCCcEEECCCCcccccCchhhc----CC---------CCCCEEEccCce
Q 048289 580 SKGSRLTILNLNDNQLEG----SVPLSLVNCSFLEVLDVGNNRINGTFPAWLG----AL---------SELQVLILRSNR 642 (920)
Q Consensus 580 ~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~----~l---------~~L~~L~L~~N~ 642 (920)
..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567788888888888876 4666777788888888888888654443333 33 788888888888
Q ss_pred ee-cccCCC-cccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289 643 FH-GPITYS-VTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720 (920)
Q Consensus 643 l~-~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (920)
+. +.++.- .....+++|+.|++++|+++..--..... ...
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------~~l 212 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGL 212 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTG
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------HHh
Confidence 76 222210 01124568888888888776210000000 000
Q ss_pred hhcccccEEEcCCCcCC----CCchhhhhccCCCceEeccCccccCC----cCccccc--ccCCccccCCCCcccc----
Q 048289 721 KVLNIFTTIDLSGNKFQ----GRIPEVVGKLNSLKGLNFSHNKLTGL----IPYSLEN--LTQLESLDLSSNKVAG---- 786 (920)
Q Consensus 721 ~~~~~l~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~--l~~L~~L~Ls~N~l~g---- 786 (920)
..++.|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+.. +++|++|+|++|++++
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 12466888999999986 67888889999999999999999876 5666633 8899999999999998
Q ss_pred cCcccc-cCCCCCCeeeccCCcccCCCC
Q 048289 787 EIPWQL-TSLNFLQVLNLSQNQLVGPIP 813 (920)
Q Consensus 787 ~ip~~l-~~l~~L~~L~ls~N~l~g~iP 813 (920)
.+|..+ .++++|++|++++|++++..|
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 588777 668999999999999987764
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.2e-22 Score=218.75 Aligned_cols=250 Identities=17% Similarity=0.170 Sum_probs=180.1
Q ss_pred CCceEEecCceecccCcccccCC--CCcCeEeCCCCcCCCcCcccccccccceeecCCCccccc-CCccccCCCcccEEE
Q 048289 513 SLNFISVSNNKLSGEIPLSFCNM--SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS-IPQTFSKGSRLTILN 589 (920)
Q Consensus 513 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 589 (920)
.++.+++++|.+. +..+..+ +.++.|++++|.+.+..+..+....|++|++++|.+++. ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3566777776665 4455555 778888888888887766654433488888888887765 677778888888888
Q ss_pred ccCCccccccCccccCCCCCcEEECCCC-ccccc-CchhhcCCCCCCEEEccCc-eeecc-cCCCcccCCCC-CCcEEEc
Q 048289 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNN-RINGT-FPAWLGALSELQVLILRSN-RFHGP-ITYSVTRFPFP-KLRILDL 664 (920)
Q Consensus 590 L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L~L 664 (920)
+++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++... ..++ +|+.|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l 202 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNL 202 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEEC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEEEe
Confidence 8888888778888888888999999888 67753 6666788888888888888 77653 22222 3467 8888888
Q ss_pred cCCc--Cc-CCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCc-CCCCc
Q 048289 665 SNNE--FT-GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK-FQGRI 740 (920)
Q Consensus 665 s~N~--l~-~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~i 740 (920)
++|. ++ +.+|.. + ..++.|+.|++++|. +++..
T Consensus 203 ~~~~~~~~~~~l~~~-~------------------------------------------~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 203 SGYRKNLQKSDLSTL-V------------------------------------------RRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp CSCGGGSCHHHHHHH-H------------------------------------------HHCTTCSEEECTTCTTCCGGG
T ss_pred CCCcccCCHHHHHHH-H------------------------------------------hhCCCCCEEeCCCCCcCCHHH
Confidence 8884 43 122211 1 124678889999998 77788
Q ss_pred hhhhhccCCCceEeccCcc-ccCCcCcccccccCCccccCCCCcccccCcccccCC-CCCCeeeccCCcccCCCCC
Q 048289 741 PEVVGKLNSLKGLNFSHNK-LTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 741 p~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~iP~ 814 (920)
+..++.+++|+.|++++|. +.......++++++|++|++++| ++. ..+..+ ..+..|++++|+++|.+|.
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 8888899999999999985 32222236788899999999988 332 234444 3477778899999988875
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=7.4e-21 Score=198.21 Aligned_cols=211 Identities=21% Similarity=0.277 Sum_probs=133.0
Q ss_pred cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640 (920)
Q Consensus 561 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 640 (920)
.+.++++++.++. +|..+. ++++.|+|++|++++..+..|.++++|++|++++|++++..+..|..+++|
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------- 85 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL------- 85 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-------
Confidence 4556666666652 333332 355666666666665555555556666666666666655555555555554
Q ss_pred ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720 (920)
Q Consensus 641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (920)
+.|++++|++++..+ ..+..
T Consensus 86 -------------------~~L~L~~n~l~~~~~-~~~~~---------------------------------------- 105 (251)
T 3m19_A 86 -------------------GTLGLANNQLASLPL-GVFDH---------------------------------------- 105 (251)
T ss_dssp -------------------CEEECTTSCCCCCCT-TTTTT----------------------------------------
T ss_pred -------------------CEEECCCCcccccCh-hHhcc----------------------------------------
Confidence 455555555443222 11111
Q ss_pred hhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCe
Q 048289 721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV 800 (920)
Q Consensus 721 ~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 800 (920)
++.|++|+|++|.+++..+..|+.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++
T Consensus 106 --l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 106 --LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp --CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 345678888888888777777888899999999999999888888999999999999999999888888999999999
Q ss_pred eeccCCcccCCCCCCCCCCCCC------cccccCCcCCCCCCCCCCCCCC
Q 048289 801 LNLSQNQLVGPIPQGKQFHTFS------SDSYNGNMGLCGFPLSEKCSND 844 (920)
Q Consensus 801 L~ls~N~l~g~iP~~~~~~~~~------~~~~~~n~~lcg~~~~~~c~~~ 844 (920)
|++++|++.+..+....+..+- .....|+ .+|+.|....|...
T Consensus 184 L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 184 ITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp EECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred EEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 9999999987644322111110 0111233 36666666667654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.8e-22 Score=223.53 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=82.1
Q ss_pred CCCCEEeCcCCcCC-ccCc---ccccCCCCCCEEEccCCcCcc-----cchhhhhcCCCCCEEECcCCCCC----Ccccc
Q 048289 251 SQLTYLDLSYNNFS-GHIP---STLSNLQQLRHLDLSNNKFTG-----QIPCIFANLTQLSFLDFSNNQLN----GPISS 317 (920)
Q Consensus 251 ~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~~~ 317 (920)
++|++|++++|.++ +.++ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44555555555444 1222 234445555555555555541 12224455555555555555553 33444
Q ss_pred cccCCCcCceeeccCcccccc----CCcccc--CCCCCCEEEccCCCCCC----Cchhhh-hcCCCCCEEEccCCcCCCc
Q 048289 318 SVSRLHSLVTIYLSYNSLNGT----IPSGLF--TSPLLESIDLRNNQLTG----SISNSI-SELVNLIDLSLSSNNLSGN 386 (920)
Q Consensus 318 ~l~~l~~L~~L~L~~n~l~~~----~~~~l~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~L~~n~l~~~ 386 (920)
.+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+++ .++..+ .++++|+.|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 555555555555555555433 344442 26667777777777765 355555 5567777777777777765
Q ss_pred ch--hhhhhhcCCCceEEcCC
Q 048289 387 VE--LYMFAELKNLLGLDLSH 405 (920)
Q Consensus 387 ~~--~~~~~~l~~L~~L~Ls~ 405 (920)
.+ ......+++++.+++..
T Consensus 319 ~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 319 DDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SHHHHHHHHHHHHHTCCEECC
T ss_pred hhHHHHHHHHhhhcCcchhhh
Confidence 53 33334445555444443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=204.67 Aligned_cols=206 Identities=19% Similarity=0.215 Sum_probs=128.6
Q ss_pred CCcCeEeCCCCcCCCcCcccc--cccc-cceeecCCCcccccCC----ccccCCCcccEEEccCCccccccCccccCCCC
Q 048289 536 SSIFYVNLSNNSLNGMIPPCL--ANSS-LWFLDMRMNNFHGSIP----QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF 608 (920)
Q Consensus 536 ~~L~~L~Ls~n~l~~~~p~~~--~~~~-L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 608 (920)
++|++|++++|.+.+..|..+ .... |++|++++|.+++..+ ..+..+++|++|+|++|++++..|..|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555544 3333 5555555555554333 23345667777777777776666667777777
Q ss_pred CcEEECCCCccccc--C--chhhcCCCCCCEEEccCceeecccCCCc-ccCCCCCCcEEEccCCcCcCCCchHHHhhhhc
Q 048289 609 LEVLDVGNNRINGT--F--PAWLGALSELQVLILRSNRFHGPITYSV-TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQA 683 (920)
Q Consensus 609 L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 683 (920)
|++|++++|++.+. + +..+..+++|++|++++|+++...+... ....+++|++||+++|++++.+|..+. .+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~- 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCM- 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCC-
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hcc-
Confidence 77777777776542 1 1223566777777777777652211000 012356777777777777776664321 000
Q ss_pred cccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCC
Q 048289 684 MMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL 763 (920)
Q Consensus 684 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 763 (920)
.++.|++|+|++|+++ .+|..+. ++|+.|+|++|++++.
T Consensus 249 --------------------------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 249 --------------------------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp --------------------------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred --------------------------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 0246788888888888 6677664 7889999999999875
Q ss_pred cCcccccccCCccccCCCCcccc
Q 048289 764 IPYSLENLTQLESLDLSSNKVAG 786 (920)
Q Consensus 764 ip~~~~~l~~L~~L~Ls~N~l~g 786 (920)
|. +..+++|++|+|++|+++.
T Consensus 288 -~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 -PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CC-TTSCCCCSCEECSSTTTSC
T ss_pred -ch-hhhCCCccEEECcCCCCCC
Confidence 33 6778889999999998874
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1e-19 Score=189.46 Aligned_cols=180 Identities=19% Similarity=0.216 Sum_probs=156.0
Q ss_pred ccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN 570 (920)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~ 570 (920)
+.+.++++++.+...+...+++++.|++++|.+++..+..|.++++|++|++++|.+++..+..+.... |+.|++++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 455667777777666656677888899999999888888899999999999999999988887787777 9999999999
Q ss_pred ccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCC
Q 048289 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYS 650 (920)
Q Consensus 571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 650 (920)
+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 99888888999999999999999999877778899999999999999999877778999999999999999999766654
Q ss_pred cccCCCCCCcEEEccCCcCcCCC
Q 048289 651 VTRFPFPKLRILDLSNNEFTGVL 673 (920)
Q Consensus 651 ~~~~~l~~L~~L~Ls~N~l~~~~ 673 (920)
+ ..+++|+.|++++|++.+..
T Consensus 175 ~--~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 175 F--DRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp T--TTCTTCCEEECCSCCBCTTS
T ss_pred H--hCCCCCCEEEeeCCceeCCc
Confidence 4 46789999999999999873
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.3e-19 Score=192.59 Aligned_cols=175 Identities=29% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCc
Q 048289 180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS 259 (920)
Q Consensus 180 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 259 (920)
++++|++++|.+.+..+..+..+++|++|++++| .+.... ..+.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCccc-CCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 4444444444444333444444444444444444 222211 1123333444444444433 334444455555555555
Q ss_pred CCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccC
Q 048289 260 YNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339 (920)
Q Consensus 260 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 339 (920)
+|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 55555444444555555555555555555444444445555555555555554443344444444444444444444 33
Q ss_pred CccccCCCCCCEEEccCCC
Q 048289 340 PSGLFTSPLLESIDLRNNQ 358 (920)
Q Consensus 340 ~~~l~~l~~L~~L~L~~n~ 358 (920)
|..+...+.|+.+++++|.
T Consensus 188 p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCCCSEEECCSCC
T ss_pred ChhhcccccCCeEEeCCCC
Confidence 4444333344444444443
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.2e-19 Score=190.89 Aligned_cols=207 Identities=22% Similarity=0.173 Sum_probs=173.8
Q ss_pred ccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCC
Q 048289 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253 (920)
Q Consensus 175 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 253 (920)
+++++++++++++++.++ .+|..+. +++++|++++| .+.+..+ .+..+++|++|++++|.+++..+ .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 567888999999999888 6676554 68999999999 5666555 78889999999999999886533 2788999
Q ss_pred CEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCc
Q 048289 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333 (920)
Q Consensus 254 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 333 (920)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 67788889999999999999999777788999999999999999999887888889999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchh
Q 048289 334 SLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL 389 (920)
Q Consensus 334 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 389 (920)
++++..+..+..+++|++|++++|.++ .+|..+....+|+.+++++|++.+....
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 998544455677899999999999998 5677777788999999999988765443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.9e-20 Score=193.63 Aligned_cols=196 Identities=19% Similarity=0.160 Sum_probs=131.2
Q ss_pred ccceeecCCCcccccCCccccCCCcccEEEccCCc-cccccCccccCCCCCcEEECCC-CcccccCchhhcCCCCCCEEE
Q 048289 560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQ-LEGSVPLSLVNCSFLEVLDVGN-NRINGTFPAWLGALSELQVLI 637 (920)
Q Consensus 560 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 637 (920)
.++.|++++|++++..+..|..+++|+.|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47777777777777777778888888888888886 7766666788888888888887 888876667777888888888
Q ss_pred ccCceeecccCCCcccCCCCCCc---EEEccCC-cCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEc
Q 048289 638 LRSNRFHGPITYSVTRFPFPKLR---ILDLSNN-EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVK 713 (920)
Q Consensus 638 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (920)
+++|++++ +|. ...+++|+ .|++++| .+++..+ ..+.+
T Consensus 112 l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~--------------------------------- 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPV-NAFQG--------------------------------- 153 (239)
T ss_dssp EEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECT-TTTTT---------------------------------
T ss_pred CCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCc-ccccc---------------------------------
Confidence 88887775 343 23455555 7777777 5553322 21111
Q ss_pred cchhhhhhhccccc-EEEcCCCcCCCCchhhhhccCCCceEeccCcc-ccCCcCcccccc-cCCccccCCCCcccccCcc
Q 048289 714 GVNMEMEKVLNIFT-TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNK-LTGLIPYSLENL-TQLESLDLSSNKVAGEIPW 790 (920)
Q Consensus 714 ~~~~~~~~~~~~l~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l-~~L~~L~Ls~N~l~g~ip~ 790 (920)
++.|+ .|++++|.++ .+|......++|+.|+|++|+ +++..+..|..+ ++|++||+++|++++..+.
T Consensus 154 ---------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 154 ---------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp ---------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred ---------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 34456 6777777776 444433333667777777774 766666667777 7777777777777643332
Q ss_pred cccCCCCCCeeeccCC
Q 048289 791 QLTSLNFLQVLNLSQN 806 (920)
Q Consensus 791 ~l~~l~~L~~L~ls~N 806 (920)
.++.|+.|+++++
T Consensus 224 ---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 ---GLEHLKELIARNT 236 (239)
T ss_dssp ---TCTTCSEEECTTC
T ss_pred ---HhccCceeeccCc
Confidence 4556666666655
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=9.2e-21 Score=207.19 Aligned_cols=255 Identities=19% Similarity=0.177 Sum_probs=136.4
Q ss_pred CCCCEEEcCCCCCCCCcchhccCC--CCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289 155 NELQELVLNSVDMSYEVPSFLTNL--SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232 (920)
Q Consensus 155 ~~L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 232 (920)
..++.++++++.+. +..+..+ ++++.|++++|.+.+. .+.+..+++|++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-------------------------~~~~~~~~~L~~L 98 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-------------------------LAEHFSPFRVQHM 98 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-------------------------CCSCCCCBCCCEE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc-------------------------chhhccCCCCCEE
Confidence 34556666655544 3334444 5555555555555433 3333334444444
Q ss_pred EccCCcCccc-ccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCC-cCcc-cchhhhhcCCCCCEEECcCC
Q 048289 233 DLYGCNFMGS-IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN-KFTG-QIPCIFANLTQLSFLDFSNN 309 (920)
Q Consensus 233 ~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n 309 (920)
++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++|
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 4444454433 5555566666666666666666555556666666666666666 4543 24555566666666666666
Q ss_pred -CCCCc-ccccccCCC-cCceeeccCc--ccc-ccCCccccCCCCCCEEEccCCC-CCCCchhhhhcCCCCCEEEccCCc
Q 048289 310 -QLNGP-ISSSVSRLH-SLVTIYLSYN--SLN-GTIPSGLFTSPLLESIDLRNNQ-LTGSISNSISELVNLIDLSLSSNN 382 (920)
Q Consensus 310 -~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~ 382 (920)
.+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 55543 344455566 6666666666 333 2344445556666666666666 554555566666666666666664
Q ss_pred CCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcc-cccceeccCCCccCCCCC
Q 048289 383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ-HRLQILDLSDNQIRGGIP 461 (920)
Q Consensus 383 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~-~~L~~L~Ls~n~l~~~~~ 461 (920)
-........+..+++|+.|++++| ++. +.+..+ ..++.|++++|++++..|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---------------------------~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPD---------------------------GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCT---------------------------TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCH---------------------------HHHHHHHhhCcceEEecccCccccC
Confidence 111111223444444555444444 211 122222 235666677777777776
Q ss_pred chhh
Q 048289 462 NWIW 465 (920)
Q Consensus 462 ~~~~ 465 (920)
..+.
T Consensus 311 ~~~~ 314 (336)
T 2ast_B 311 PTIG 314 (336)
T ss_dssp SSCS
T ss_pred Cccc
Confidence 6553
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=2.7e-20 Score=192.50 Aligned_cols=200 Identities=21% Similarity=0.239 Sum_probs=118.7
Q ss_pred CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCc-CCCcCcccccccccceeecCCCcccccCCccccCCCcccEE
Q 048289 510 LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS-LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588 (920)
Q Consensus 510 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 588 (920)
.++++++|++++|++++..+..|.++++|++|++++|+ +++..+.. |.++++|++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----------------------f~~l~~L~~L 85 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----------------------FYNLSKVTHI 85 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-----------------------EESCTTCCEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-----------------------cCCCcCCcEE
Confidence 55567777777777776666667777777777777765 55433334 4444445555
Q ss_pred EccC-CccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCC---EEEccCc-eeecccCCCcccCCCCCCc-EE
Q 048289 589 NLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ---VLILRSN-RFHGPITYSVTRFPFPKLR-IL 662 (920)
Q Consensus 589 ~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L 662 (920)
++++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| ++.+..+..+ ..+++|+ .|
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L 161 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTL 161 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEE
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEE
Confidence 5544 44444444444455555555555555443 333 44444444 5555555 4443333222 2355566 66
Q ss_pred EccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCc-CCCCch
Q 048289 663 DLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK-FQGRIP 741 (920)
Q Consensus 663 ~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~ip 741 (920)
++++|+++ .+|...+. .+.|+.|++++|. +++..+
T Consensus 162 ~l~~n~l~-~i~~~~~~-------------------------------------------~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 162 KLYNNGFT-SVQGYAFN-------------------------------------------GTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp ECCSCCCC-EECTTTTT-------------------------------------------TCEEEEEECTTCTTCCEECT
T ss_pred EcCCCCCc-ccCHhhcC-------------------------------------------CCCCCEEEcCCCCCcccCCH
Confidence 66666665 34432211 1356788888884 886667
Q ss_pred hhhhcc-CCCceEeccCccccCCcCcccccccCCccccCCCCc
Q 048289 742 EVVGKL-NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783 (920)
Q Consensus 742 ~~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 783 (920)
..|..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 198 ~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 198 DAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred HHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 778888 8999999999999865443 56788888888763
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.2e-19 Score=194.83 Aligned_cols=189 Identities=21% Similarity=0.317 Sum_probs=133.9
Q ss_pred cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640 (920)
Q Consensus 561 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 640 (920)
|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|++++|++++. ..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 55555555555432 2 35566677777777777764433 66677777777777776643 2466677777777777
Q ss_pred ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720 (920)
Q Consensus 641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (920)
|++++..+ ...+++|+.|++++|++++..+ +..
T Consensus 117 n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~---------------------------------------- 149 (308)
T 1h6u_A 117 TQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAG---------------------------------------- 149 (308)
T ss_dssp SCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGG----------------------------------------
T ss_pred CCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccC----------------------------------------
Confidence 77665322 2456778888888887765432 111
Q ss_pred hhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCe
Q 048289 721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV 800 (920)
Q Consensus 721 ~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 800 (920)
++.|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +..+++|+.
T Consensus 150 --l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 221 (308)
T 1h6u_A 150 --LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221 (308)
T ss_dssp --CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred --CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCE
Confidence 3567888899998886544 8888999999999999987654 7889999999999999987664 788999999
Q ss_pred eeccCCcccC
Q 048289 801 LNLSQNQLVG 810 (920)
Q Consensus 801 L~ls~N~l~g 810 (920)
|++++|++++
T Consensus 222 L~l~~N~i~~ 231 (308)
T 1h6u_A 222 VTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEC
T ss_pred EEccCCeeec
Confidence 9999999876
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.3e-19 Score=198.60 Aligned_cols=241 Identities=18% Similarity=0.171 Sum_probs=140.7
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcc-cccccc--cceeecCCCc
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP-CLANSS--LWFLDMRMNN 570 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~--L~~L~L~~n~ 570 (920)
+++++++++++..+...++++++|++++|+|+...+.+|.++++|++|+|++|++.+.+|. .+.... ++.+.++.|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4566677777765555567888888888888876667888888899888888888765553 334433 3334555566
Q ss_pred ccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC-CcccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN-NRINGTFPAWLGALSELQVLILRSNRFHGPITY 649 (920)
Q Consensus 571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 649 (920)
++...|..|..+++|+.|++++|++++..+..+....++..|++.+ +++....+..|..+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~------------------ 153 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------------ 153 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB------------------
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc------------------
Confidence 6655566666666666666666666554444454555555555543 344433333333332
Q ss_pred CcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEE
Q 048289 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTI 729 (920)
Q Consensus 650 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 729 (920)
..++.|++++|+++. +|...+. ...++.+
T Consensus 154 -------~~l~~L~L~~N~i~~-i~~~~f~-------------------------------------------~~~L~~l 182 (350)
T 4ay9_X 154 -------FESVILWLNKNGIQE-IHNSAFN-------------------------------------------GTQLDEL 182 (350)
T ss_dssp -------SSCEEEECCSSCCCE-ECTTSST-------------------------------------------TEEEEEE
T ss_pred -------hhhhhhccccccccC-CChhhcc-------------------------------------------ccchhHH
Confidence 234555555555543 2222111 1235666
Q ss_pred EcCC-CcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCc
Q 048289 730 DLSG-NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQ 807 (920)
Q Consensus 730 ~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~ 807 (920)
++++ |.++...+..|+.+++|+.|||++|+|+...+..|.+|++|+.+++.+ + ..+| .+.++++|+.++++++.
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~--l-~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--L-KKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT--C-CCCC-CTTTCCSCCEEECSCHH
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC--c-CcCC-CchhCcChhhCcCCCCc
Confidence 6664 344432234567777777777777777765555555555555444322 2 2455 36677777777776543
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=7.7e-19 Score=188.64 Aligned_cols=195 Identities=25% Similarity=0.341 Sum_probs=120.1
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289 74 LFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN 153 (920)
Q Consensus 74 l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~ 153 (920)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|++..++ .+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~------~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS------AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG------GGTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch------hhcC
Confidence 4567778888888877765 44 46777888888888887774 333 777777888887777654321 2344
Q ss_pred CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEE
Q 048289 154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD 233 (920)
Q Consensus 154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 233 (920)
+++|++|++++|.+++.. .+..+++|++|++++|.+.+. . .+..+++|++|+
T Consensus 106 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~-------------------------~-~l~~l~~L~~L~ 157 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI-------------------------S-PLAGLTNLQYLS 157 (308)
T ss_dssp CTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC-------------------------G-GGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcC-------------------------c-cccCCCCccEEE
Confidence 445555555555444321 144445555555555544422 1 244445555555
Q ss_pred ccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313 (920)
Q Consensus 234 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (920)
+++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 158 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 55555554322 6677777777777777764332 6777777777777777775443 6777778888887777764
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3.4e-19 Score=205.16 Aligned_cols=190 Identities=24% Similarity=0.318 Sum_probs=142.9
Q ss_pred CCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289 536 SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG 615 (920)
Q Consensus 536 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 615 (920)
.+++.|++++|.+++ +|..+. ..|+.|++++|+++ .+| ..+++|+.|+|++|++++ +|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 388999999999886 666543 34899999999888 455 446888999999998886 666 554 88899999
Q ss_pred CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCC
Q 048289 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGG 695 (920)
Q Consensus 616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~ 695 (920)
+|++++ +|. .+++|++|++++|++++ +|. .+++|+.|++++|++++ +|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l------------------ 178 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L------------------ 178 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h------------------
Confidence 998886 555 57888888888888876 443 35788888888888876 553 1
Q ss_pred cceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCC-------ceEeccCccccCCcCccc
Q 048289 696 NMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL-------KGLNFSHNKLTGLIPYSL 768 (920)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~~ 768 (920)
.+.|+.|+|++|.|+ .+|. +.. +| +.|+|++|+|+ .+|..+
T Consensus 179 ---------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 179 ---------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 134678888888888 5666 554 66 88888888887 467777
Q ss_pred ccccCCccccCCCCcccccCcccccCCCC
Q 048289 769 ENLTQLESLDLSSNKVAGEIPWQLTSLNF 797 (920)
Q Consensus 769 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 797 (920)
..+++|+.|+|++|++++.+|..+..++.
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 77888888888888888888887776543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.4e-19 Score=177.80 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=148.8
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCccc
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFH 572 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~ 572 (920)
+.++++++.++......++++++|++++|++++..+..|..+++|++|++++|++++..+..+.... |++|++++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3556666666655555567888888888888877777788999999999999999877666666666 999999999999
Q ss_pred ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652 (920)
Q Consensus 573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 652 (920)
+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------- 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence 8888888999999999999999998877889999999999999999998777778999999999999998873
Q ss_pred cCCCCCCcEEEccCCcCcCCCchH
Q 048289 653 RFPFPKLRILDLSNNEFTGVLPTR 676 (920)
Q Consensus 653 ~~~l~~L~~L~Ls~N~l~~~~p~~ 676 (920)
.+++|+.|+++.|+++|.+|..
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCT
T ss_pred --CCCCHHHHHHHHHhCCceeecc
Confidence 4678999999999999999965
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=175.43 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=133.0
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR 618 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (920)
+.++.+++.++. +|..+. ..+++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~-~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSS-CCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccC-CCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 345555555542 333221 136777777777776666667777777777777777776666667777778888888887
Q ss_pred ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcce
Q 048289 619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY 698 (920)
Q Consensus 619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~ 698 (920)
+++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|++++..+ ..+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~-~~~~~------------------ 146 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPD-GVFDR------------------ 146 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCT-TTTTT------------------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCH-HHhcc------------------
Confidence 776666667777788888888887775544333 456778888888888775433 22211
Q ss_pred eccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcccc
Q 048289 699 INYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778 (920)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~ 778 (920)
++.|+.|++++|.+.+. ++.|+.|+++.|+++|.+|..++.++. +
T Consensus 147 ------------------------l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~ 191 (208)
T 2o6s_A 147 ------------------------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----D 191 (208)
T ss_dssp ------------------------CTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----T
T ss_pred ------------------------CCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC----C
Confidence 35678888888887754 457888899999999999988887765 5
Q ss_pred CCCCcccccCcccc
Q 048289 779 LSSNKVAGEIPWQL 792 (920)
Q Consensus 779 Ls~N~l~g~ip~~l 792 (920)
+..+...|..+..+
T Consensus 192 ~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 192 SAKCSGSGKPVRSI 205 (208)
T ss_dssp CSBBTTTCCBGGGC
T ss_pred ccccccCCCcceee
Confidence 66666666555443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=2.1e-18 Score=189.09 Aligned_cols=231 Identities=16% Similarity=0.115 Sum_probs=168.8
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcE-EECCC
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEV-LDVGN 616 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~-L~L~~ 616 (920)
++++.++++++ .+|..+. ..+++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~-~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC-TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC-CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 46777777777 4565442 238889999999987777889999999999999999876555 57888888765 66778
Q ss_pred CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289 617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696 (920)
Q Consensus 617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 696 (920)
|+++...|..|..+++|++|++++|++.+..+... ....++..+++.++.-...+|...+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~---------------- 151 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVG---------------- 151 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTT----------------
T ss_pred CcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchhh----------------
Confidence 99998888899999999999999999886554433 345678888887654333444332211
Q ss_pred ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccC-ccccCCcCcccccccCCc
Q 048289 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH-NKLTGLIPYSLENLTQLE 775 (920)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~~l~~L~ 775 (920)
....++.|+|++|+|+. +|.......+|+.|++++ |.++...+++|+.+++|+
T Consensus 152 -------------------------~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 152 -------------------------LSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp -------------------------SBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred -------------------------cchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 12357889999999994 665555667899999986 666655556889999999
Q ss_pred cccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCC
Q 048289 776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQF 818 (920)
Q Consensus 776 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 818 (920)
+|||++|+|+...+..|.+|+ .|.+.++.--..+|.-..+
T Consensus 206 ~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 206 ILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLPTLEKL 245 (350)
T ss_dssp EEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCCCTTTC
T ss_pred hhhcCCCCcCccChhhhccch---HhhhccCCCcCcCCCchhC
Confidence 999999999976666665554 5555544434477754333
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2.5e-18 Score=197.99 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=123.4
Q ss_pred ccCCCCCCCCCc-----cccce-EecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCC
Q 048289 29 KMISWKEEKDCC-----SWDGV-TCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRF 102 (920)
Q Consensus 29 ~l~~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l 102 (920)
.+.+|....++| .|.|+ .|.. ++++.|+|+++.+.+ +|. .+ +++|++|+|++|.++. +| ..+
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l 99 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELP 99 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCC
T ss_pred HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---ccc
Confidence 466787677778 79999 7863 579999999999886 665 34 3789999999998884 67 457
Q ss_pred CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCC
Q 048289 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT 182 (920)
Q Consensus 103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 182 (920)
++|++|+|++|.+++ +|. +.+ +|++|++++|.+..++. .+ ++|+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~--------~l------------------------~~L~ 143 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE--------LP------------------------ALLE 143 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC--------CC------------------------TTCC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC--------cC------------------------cccc
Confidence 889999999998885 666 654 88888888886654322 23 4444
Q ss_pred EEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccC-----CCCCCEEe
Q 048289 183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN-----LSQLTYLD 257 (920)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~ 257 (920)
+|++++|.+++ +|. .+++|++|++++| .+.+ +|.+. ++|++|++++|.++ .+|. +.. .+.|++|+
T Consensus 144 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~L~~-lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 144 YINADNNQLTM-LPE---LPTSLEVLSVRNN-QLTF-LPELP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFR 213 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSC-CCCCC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEE
T ss_pred EEeCCCCccCc-CCC---cCCCcCEEECCCC-CCCC-cchhh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEe
Confidence 44444444442 332 2344444444444 2222 11111 33444444444433 2333 222 11125555
Q ss_pred CcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhc
Q 048289 258 LSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297 (920)
Q Consensus 258 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 297 (920)
+++|.++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus 214 Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 5555555 34544555555555555555555555555444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=167.48 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=92.6
Q ss_pred eEecccCcCCCCCCCCCCCCceEEecCceecccCc-ccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289 495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG 573 (920)
Q Consensus 495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~ 573 (920)
.+++++|.++..+...++.+++|++++|++++..+ ..|..+++|++|++++|+++ +
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-----------------------~ 71 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-----------------------D 71 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-----------------------E
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-----------------------E
Confidence 45555555544333334445555555555554433 33455555555555555554 4
Q ss_pred cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR 653 (920)
Q Consensus 574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 653 (920)
..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 149 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-- 149 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--
Confidence 444455556666666666666665555556666666666666666666556666666666666666666665555444
Q ss_pred CCCCCCcEEEccCCcCcCCCchHHHh
Q 048289 654 FPFPKLRILDLSNNEFTGVLPTRYFQ 679 (920)
Q Consensus 654 ~~l~~L~~L~Ls~N~l~~~~p~~~~~ 679 (920)
..+++|+.|++++|++.+..+..++.
T Consensus 150 ~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred cCCCCCCEEEecCcCCcCCCchHHHH
Confidence 34666777777777777766655543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.2e-17 Score=177.69 Aligned_cols=186 Identities=21% Similarity=0.335 Sum_probs=130.7
Q ss_pred eecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCcee
Q 048289 564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643 (920)
Q Consensus 564 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 643 (920)
+.+..+.+++..+ +..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++|++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444443322 23456666777777766633 2 36666777777777777765443 66777777777777776
Q ss_pred ecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhc
Q 048289 644 HGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVL 723 (920)
Q Consensus 644 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (920)
++... ...+++|+.|++++|++++. + . +. .+
T Consensus 103 ~~~~~----l~~l~~L~~L~L~~n~i~~~-~-~-l~------------------------------------------~l 133 (291)
T 1h6t_A 103 KDLSS----LKDLKKLKSLSLEHNGISDI-N-G-LV------------------------------------------HL 133 (291)
T ss_dssp CCGGG----GTTCTTCCEEECTTSCCCCC-G-G-GG------------------------------------------GC
T ss_pred CCChh----hccCCCCCEEECCCCcCCCC-h-h-hc------------------------------------------CC
Confidence 65211 24567788888888877652 2 1 11 14
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL 803 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 803 (920)
+.|+.|++++|.+++. ..++.+++|+.|+|++|++++..| +..+++|++|++++|++++. | .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL 207 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 5678899999998875 568889999999999999988766 88999999999999999864 4 4889999999999
Q ss_pred cCCcccC
Q 048289 804 SQNQLVG 810 (920)
Q Consensus 804 s~N~l~g 810 (920)
++|+++.
T Consensus 208 ~~n~i~~ 214 (291)
T 1h6t_A 208 FSQECLN 214 (291)
T ss_dssp EEEEEEC
T ss_pred cCCcccC
Confidence 9999875
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=3.7e-17 Score=166.00 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=86.1
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG 573 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~ 573 (920)
+.++++++.++..+...+++++.|++++|.+++..+..|..+++|++|++++|++++..|..+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~----------------- 76 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF----------------- 76 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-----------------
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-----------------
Confidence 345555555555444445566666666666666666666666666666666666665444444
Q ss_pred cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR 653 (920)
Q Consensus 574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 653 (920)
.++++|++|+|++|+++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+
T Consensus 77 ------~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 148 (220)
T 2v9t_B 77 ------QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF-- 148 (220)
T ss_dssp ------TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--
T ss_pred ------hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--
Confidence 444445555555555543333344445555555555555554444445555555555555555544333222
Q ss_pred CCCCCCcEEEccCCcCcCCCchHHH
Q 048289 654 FPFPKLRILDLSNNEFTGVLPTRYF 678 (920)
Q Consensus 654 ~~l~~L~~L~Ls~N~l~~~~p~~~~ 678 (920)
..+++|+.|++++|++.+.....++
T Consensus 149 ~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred hCCCCCCEEEeCCCCcCCCCccHHH
Confidence 2345566666666666655444443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=8.9e-17 Score=163.21 Aligned_cols=144 Identities=24% Similarity=0.293 Sum_probs=120.9
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCC-ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (920)
+.+++++|.++. +|..+. ..++.|++++|++++..+ ..|..+++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~-iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCccc-CccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 478888888874 555432 227889999999988755 56899999999999999999888889999999999999999
Q ss_pred cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccC
Q 048289 618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHG 687 (920)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~ 687 (920)
++++..+..|..+++|++|+|++|++++..|..+ ..+++|+.|+|++|++++..|.. +..++.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L 158 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF--IGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTL 158 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS--TTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc--CCCccCCEEECCCCcCCEECHHH-hcCCCCCCEE
Confidence 9998888889999999999999999998877766 56899999999999999877744 5555555443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=2.6e-17 Score=191.82 Aligned_cols=191 Identities=24% Similarity=0.309 Sum_probs=130.4
Q ss_pred CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289 537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG 615 (920)
Q Consensus 537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 615 (920)
.+..+.+..+.+....+ +.... |+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 45556677776664433 23334 88888888887754 2 47778888888888888876554 7778888888888
Q ss_pred CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCC
Q 048289 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGG 695 (920)
Q Consensus 616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~ 695 (920)
+|++++ +| .+..+++|+.|+|++|++.+. + ....+++|+.|+|++|++++. + .+.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l-~--~l~---------------- 150 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDI-T--VLS---------------- 150 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCC-G--GGG----------------
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCc-h--hhc----------------
Confidence 888874 23 577778888888888877653 1 124567777777777777653 1 111
Q ss_pred cceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCc
Q 048289 696 NMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLE 775 (920)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 775 (920)
.++.|+.|+|++|.+++..| +..+++|+.|+|++|+|++. ..+..+++|+
T Consensus 151 --------------------------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~ 200 (605)
T 1m9s_A 151 --------------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLD 200 (605)
T ss_dssp --------------------------SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCS
T ss_pred --------------------------ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCC
Confidence 13556777777777776655 77777777777777777764 3577777777
Q ss_pred cccCCCCcccccC
Q 048289 776 SLDLSSNKVAGEI 788 (920)
Q Consensus 776 ~L~Ls~N~l~g~i 788 (920)
.|+|++|++++..
T Consensus 201 ~L~L~~N~l~~~p 213 (605)
T 1m9s_A 201 VLELFSQECLNKP 213 (605)
T ss_dssp EEECCSEEEECCC
T ss_pred EEEccCCcCcCCc
Confidence 7777777777653
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.1e-16 Score=162.44 Aligned_cols=143 Identities=21% Similarity=0.281 Sum_probs=121.1
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR 618 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (920)
+.++++++.++. +|..+. ..++.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCc-CCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888773 555443 349999999999998888899999999999999999999999999999999999999999
Q ss_pred ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhcccc
Q 048289 619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686 (920)
Q Consensus 619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 686 (920)
++...+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|++++..+ ..+..++.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 156 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAF--QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQT 156 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHc--CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCE
Confidence 997777778999999999999999998877665 568999999999999997655 44555555543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.8e-16 Score=162.15 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=92.3
Q ss_pred cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCccc
Q 048289 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFH 572 (920)
Q Consensus 493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~ 572 (920)
-+.++++++.+...+...+++|++|++++|.+++..|..|..+++|++|++++|++.+..
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-------------------- 80 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-------------------- 80 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------------
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--------------------
Confidence 345666666665555545566677777777777666666666777777777666665433
Q ss_pred ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652 (920)
Q Consensus 573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 652 (920)
+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+
T Consensus 81 ---~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~- 155 (229)
T 3e6j_A 81 ---VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF- 155 (229)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT-
T ss_pred ---hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH-
Confidence 334445555555555555555544455555556666666666655 445555556666666666665554333222
Q ss_pred cCCCCCCcEEEccCCcCcCCCc
Q 048289 653 RFPFPKLRILDLSNNEFTGVLP 674 (920)
Q Consensus 653 ~~~l~~L~~L~Ls~N~l~~~~p 674 (920)
..+++|+.|++++|++.+..+
T Consensus 156 -~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 156 -DRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -TTCTTCCEEECTTSCBCTTBG
T ss_pred -hCCCCCCEEEeeCCCccCCcc
Confidence 345667777777777776654
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=180.66 Aligned_cols=179 Identities=22% Similarity=0.194 Sum_probs=141.5
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCccccc-CCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFC-NMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF 571 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l 571 (920)
+.++++++.++..+...++.++.|++++|++++..+..+. ++++|+.|++++|++++..+..+.... |+.|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 4566666666665555566788888888888887777777 889999999999999877777777777 99999999999
Q ss_pred cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh---cCCCCCCEEEccCceeecccC
Q 048289 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL---GALSELQVLILRSNRFHGPIT 648 (920)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~~ 648 (920)
++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|+|++|++++..+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 88888889999999999999999998888899999999999999999986555555 568999999999999875432
Q ss_pred CCcccCCCCC--CcEEEccCCcCcCCCc
Q 048289 649 YSVTRFPFPK--LRILDLSNNEFTGVLP 674 (920)
Q Consensus 649 ~~~~~~~l~~--L~~L~Ls~N~l~~~~p 674 (920)
..+ ..++. ++.|+|++|++.+...
T Consensus 181 ~~~--~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 181 TDL--QKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHH--HHSCHHHHTTEECCSSCEECCHH
T ss_pred HHh--hhccHhhcceEEecCCCccCCcC
Confidence 222 22444 4789999999987654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.2e-16 Score=186.29 Aligned_cols=196 Identities=18% Similarity=0.209 Sum_probs=144.8
Q ss_pred CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEcc
Q 048289 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLN 591 (920)
Q Consensus 513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 591 (920)
.+..+.+..+.+....+ +..++.|+.|++++|.+... + .+..++ |+.|+|++|++++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34455566666654433 45678888888888888743 3 355555 8889998888887655 7888888999999
Q ss_pred CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671 (920)
Q Consensus 592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 671 (920)
+|.+++ +| .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++. . ....+++|+.|+|++|++.+
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h--hhcccCCCCEEECcCCcCCC
Confidence 888875 33 688888899999999888853 4578888899999988888764 1 23467888899999888887
Q ss_pred CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc
Q 048289 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751 (920)
Q Consensus 672 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~ 751 (920)
..| +.. ++.|+.|+|++|.+++. | .+..+++|+
T Consensus 168 ~~~---l~~------------------------------------------l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~ 200 (605)
T 1m9s_A 168 IVP---LAG------------------------------------------LTKLQNLYLSKNHISDL-R-ALAGLKNLD 200 (605)
T ss_dssp CGG---GTT------------------------------------------CTTCCEEECCSSCCCBC-G-GGTTCTTCS
T ss_pred chh---hcc------------------------------------------CCCCCEEECcCCCCCCC-h-HHccCCCCC
Confidence 555 221 35678888888888864 3 588888889
Q ss_pred eEeccCccccCCcCcccc
Q 048289 752 GLNFSHNKLTGLIPYSLE 769 (920)
Q Consensus 752 ~L~Ls~N~l~~~ip~~~~ 769 (920)
.|+|++|++++.....+.
T Consensus 201 ~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 201 VLELFSQECLNKPINHQS 218 (605)
T ss_dssp EEECCSEEEECCCCCCCS
T ss_pred EEEccCCcCcCCcccccc
Confidence 999998888876443333
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=7.5e-16 Score=157.50 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=119.8
Q ss_pred cCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289 538 IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617 (920)
Q Consensus 538 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (920)
.+.++.+++.++ .+|..+. ..|+.|++++|++++..|..|..+++|+.|+|++|+++...+..|..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 456788888776 4554433 34999999999999988999999999999999999998777788899999999999999
Q ss_pred cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccC
Q 048289 618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHG 687 (920)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~ 687 (920)
++++..+..|..+++|++|++++|+++ .+|..+ ..+++|+.|++++|++++..+ ..+..++.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 164 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI--ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHA 164 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG--GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCccc--ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEE
Confidence 999888888999999999999999998 566655 568999999999999996544 555666655543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=2.1e-16 Score=173.85 Aligned_cols=172 Identities=21% Similarity=0.148 Sum_probs=137.5
Q ss_pred EEECCCCcCcCccCCCCcccceEecccCcCCCCCCC----CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCC
Q 048289 474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF----LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549 (920)
Q Consensus 474 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (920)
.++++++.++.++......++.|++++|++++..+. ..++|++|++++|+|++..+..|.++++|++|++++|+++
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 444445555444443344556666666665554332 3568899999999999888889999999999999999999
Q ss_pred CcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccc---cCCCCCcEEECCCCcccccCch
Q 048289 550 GMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL---VNCSFLEVLDVGNNRINGTFPA 625 (920)
Q Consensus 550 ~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~ 625 (920)
+..+..+.... |+.|+|++|++++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|++++..+.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 87777787777 9999999999999999999999999999999999997555555 5799999999999999977777
Q ss_pred hhcCCCC--CCEEEccCceeec
Q 048289 626 WLGALSE--LQVLILRSNRFHG 645 (920)
Q Consensus 626 ~l~~l~~--L~~L~L~~N~l~~ 645 (920)
.+..++. ++.|+|++|++..
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEEC
T ss_pred HhhhccHhhcceEEecCCCccC
Confidence 8888887 4899999999874
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=8.9e-16 Score=163.14 Aligned_cols=149 Identities=26% Similarity=0.288 Sum_probs=65.7
Q ss_pred cCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 048289 176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255 (920)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 255 (920)
..+++|++|++++|.+++.. . +..+++|++|++++| .+.. ++.+..+++|++|++++|.+.+. ..+..+++|++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~ 138 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDEN-KVKD-LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 138 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSS-CCCC-GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred hcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCC-cCCC-ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence 33444444444444443221 1 444444444444444 2221 12233333333333333333321 23444555555
Q ss_pred EeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccc
Q 048289 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335 (920)
Q Consensus 256 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 335 (920)
|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.+
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcc
Confidence 55555555532 345555555555555555554333 45555555555555555432 1 244445555555555544
Q ss_pred c
Q 048289 336 N 336 (920)
Q Consensus 336 ~ 336 (920)
.
T Consensus 213 ~ 213 (291)
T 1h6t_A 213 L 213 (291)
T ss_dssp E
T ss_pred c
Confidence 3
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.8e-17 Score=196.75 Aligned_cols=191 Identities=19% Similarity=0.220 Sum_probs=89.1
Q ss_pred CCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecc
Q 048289 567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP 646 (920)
Q Consensus 567 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 646 (920)
..|++. ..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|+++++|++|+|++|+++ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 334443 44555666666666666666666 45555556666666666666666 56666666666666666666666 4
Q ss_pred cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccc
Q 048289 647 ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIF 726 (920)
Q Consensus 647 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 726 (920)
+|..+ ..+++|++|+|++|.++ .+|.. +.+ ++.|
T Consensus 285 lp~~~--~~l~~L~~L~L~~N~l~-~lp~~-~~~------------------------------------------l~~L 318 (727)
T 4b8c_D 285 LPAEL--GSCFQLKYFYFFDNMVT-TLPWE-FGN------------------------------------------LCNL 318 (727)
T ss_dssp CCSSG--GGGTTCSEEECCSSCCC-CCCSS-TTS------------------------------------------CTTC
T ss_pred cChhh--cCCCCCCEEECCCCCCC-ccChh-hhc------------------------------------------CCCc
Confidence 45444 34566666666666665 44533 211 3455
Q ss_pred cEEEcCCCcCCCCchhhhhccCCC-ceEeccCccccCCcCcccccccCCccccCCCC--------cccccCcccccCCCC
Q 048289 727 TTIDLSGNKFQGRIPEVVGKLNSL-KGLNFSHNKLTGLIPYSLENLTQLESLDLSSN--------KVAGEIPWQLTSLNF 797 (920)
Q Consensus 727 ~~L~Ls~N~l~~~ip~~l~~l~~L-~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N--------~l~g~ip~~l~~l~~ 797 (920)
+.|+|++|.|++.+|..++.+... ..|+|++|.++|.+|.. |+.|++++| .+.+.++..+..+..
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~ 392 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAK 392 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccc
Confidence 667777777777777666554322 23677777777777754 344555555 444555555666677
Q ss_pred CCeeeccCCcccCCCC
Q 048289 798 LQVLNLSQNQLVGPIP 813 (920)
Q Consensus 798 L~~L~ls~N~l~g~iP 813 (920)
+....+++|-+++...
T Consensus 393 ~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 393 RTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ---------CCCGGGC
T ss_pred cceeeeeccccccccC
Confidence 7777788887765443
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.5e-17 Score=160.43 Aligned_cols=113 Identities=26% Similarity=0.402 Sum_probs=93.6
Q ss_pred cccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeee
Q 048289 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLN 802 (920)
Q Consensus 723 ~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 802 (920)
++.|+.|+|++|.+++..|..|+.+++|+.|+|++|+|++..|..|+.+++|++|+|++|++++.+|..|..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45678999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCCCCCCC-CCcccccCCcCCCCCC
Q 048289 803 LSQNQLVGPIPQGKQFHT-FSSDSYNGNMGLCGFP 836 (920)
Q Consensus 803 ls~N~l~g~iP~~~~~~~-~~~~~~~~n~~lcg~~ 836 (920)
+++|+++|..|... +.. +....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence 99999998876321 111 1122334555566655
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=9e-17 Score=168.01 Aligned_cols=167 Identities=21% Similarity=0.275 Sum_probs=102.9
Q ss_pred cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640 (920)
Q Consensus 561 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 640 (920)
+..+++++|.+++.. .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 555566666665433 34555666666666666653 33 45556666666666666654333 55555555555555
Q ss_pred ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720 (920)
Q Consensus 641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (920)
|+++ + +|...
T Consensus 95 N~l~--------------------------~-l~~~~------------------------------------------- 104 (263)
T 1xeu_A 95 NRLK--------------------------N-LNGIP------------------------------------------- 104 (263)
T ss_dssp SCCS--------------------------C-CTTCC-------------------------------------------
T ss_pred CccC--------------------------C-cCccc-------------------------------------------
Confidence 5444 3 11000
Q ss_pred hhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCe
Q 048289 721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV 800 (920)
Q Consensus 721 ~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 800 (920)
.+.|+.|++++|.+++. | .++.+++|+.|+|++|++++. | .++.+++|++|++++|++++. ..+..+++|++
T Consensus 105 --~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 105 --SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp --CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred --cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 02356677777777653 3 477777777777877777765 3 577778888888888887776 56777888888
Q ss_pred eeccCCcccCC
Q 048289 801 LNLSQNQLVGP 811 (920)
Q Consensus 801 L~ls~N~l~g~ 811 (920)
|++++|++++.
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 88888887755
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.1e-18 Score=199.94 Aligned_cols=185 Identities=24% Similarity=0.288 Sum_probs=128.9
Q ss_pred CCcccEEEccCCccccccCccccCCCCCcEEECCCCc-------------ccccCchhhcCCCCCCEEE-ccCceeeccc
Q 048289 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR-------------INGTFPAWLGALSELQVLI-LRSNRFHGPI 647 (920)
Q Consensus 582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~-L~~N~l~~~~ 647 (920)
+++|+.|+|++|+++ .+|..+++|++|++|++++|. +.+..|..++.+++|+.|+ ++.|.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 444555555555554 445555555555555554443 3445555666666666666 4444322100
Q ss_pred CC-----CcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhh
Q 048289 648 TY-----SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV 722 (920)
Q Consensus 648 ~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (920)
.. .+.......|+.|++++|.+++ +|. +..
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~--~~~------------------------------------------ 461 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH--LEQ------------------------------------------ 461 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC--GGG------------------------------------------
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC--ccc------------------------------------------
Confidence 00 0000112358899999999986 553 222
Q ss_pred cccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccC-cccccCCCCCCee
Q 048289 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI-PWQLTSLNFLQVL 801 (920)
Q Consensus 723 ~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L 801 (920)
++.|+.|+|++|.|+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|++|+|++|+|++.+ |..+..+++|++|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 356789999999999 789999999999999999999998 57 8999999999999999999987 9999999999999
Q ss_pred eccCCcccCCCCCC
Q 048289 802 NLSQNQLVGPIPQG 815 (920)
Q Consensus 802 ~ls~N~l~g~iP~~ 815 (920)
++++|+++|.+|..
T Consensus 539 ~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 539 NLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECTTSGGGGSSSCT
T ss_pred EecCCcCCCCccHH
Confidence 99999999887643
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.1e-16 Score=167.23 Aligned_cols=170 Identities=22% Similarity=0.303 Sum_probs=123.9
Q ss_pred CCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEE
Q 048289 534 NMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVL 612 (920)
Q Consensus 534 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 612 (920)
.+..+..+++++|.+++.. .+.... |+.|++++|.++.. + .+..+++|+.|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4567888899999998543 355555 99999999999854 4 68899999999999999997655 9999999999
Q ss_pred ECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCC
Q 048289 613 DVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692 (920)
Q Consensus 613 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~ 692 (920)
++++|++++. |.. .. ++|++|++++|++++. + . ...
T Consensus 91 ~L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~-~-~--l~~------------------------------------- 126 (263)
T 1xeu_A 91 SVNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT-D-S--LIH------------------------------------- 126 (263)
T ss_dssp ECCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS-G-G--GTT-------------------------------------
T ss_pred ECCCCccCCc-Ccc-cc-CcccEEEccCCccCCC-h-h--hcC-------------------------------------
Confidence 9999999863 322 12 5555555555554431 0 0 111
Q ss_pred CCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCccccccc
Q 048289 693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772 (920)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 772 (920)
++.|+.|++++|++++. | .++.+++|+.|+|++|++++. ..+..++
T Consensus 127 ------------------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~ 172 (263)
T 1xeu_A 127 ------------------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLK 172 (263)
T ss_dssp ------------------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred ------------------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCC
Confidence 34566777777777654 3 577777888888888888776 6677788
Q ss_pred CCccccCCCCccccc
Q 048289 773 QLESLDLSSNKVAGE 787 (920)
Q Consensus 773 ~L~~L~Ls~N~l~g~ 787 (920)
+|+.|++++|++++.
T Consensus 173 ~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 173 KVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCEEEEEEEEEECC
T ss_pred CCCEEeCCCCcccCC
Confidence 888888888887765
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.8e-18 Score=198.93 Aligned_cols=205 Identities=19% Similarity=0.144 Sum_probs=136.7
Q ss_pred CCCCcCceEeeeccCCcCCchhhhcccccceeccCCCc-------------cCCCCCchhhccCCCCCcEEECCCCcCcC
Q 048289 418 SSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ-------------IRGGIPNWIWNVGKDTLNHLNLSHNFLTG 484 (920)
Q Consensus 418 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 484 (920)
...+.|+.|++++|.++.+|+.++.+++|+.|++++|. ..+..|..+. .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~---------------- 407 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--Y---------------- 407 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--H----------------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--H----------------
Confidence 45778899999999999999999999999999998775 2222232222 2
Q ss_pred ccCCCCcccceEe-cccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cc
Q 048289 485 IELLPWKNLRYLD-LRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LW 562 (920)
Q Consensus 485 ~~~~~~~~L~~L~-L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~ 562 (920)
+++|+.|+ ++.|.+. .|+.+.+++|.++...+ ..|+.|++++|.+++ +|. +...+ |+
T Consensus 408 -----l~~L~~L~~l~~n~~~--------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~ 466 (567)
T 1dce_A 408 -----FSTLKAVDPMRAAYLD--------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVT 466 (567)
T ss_dssp -----HHHHHHHCGGGHHHHH--------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred -----HHhcccCcchhhcccc--------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCc
Confidence 23444444 3433322 34445555555553322 236777777777765 454 55555 77
Q ss_pred eeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccC-chhhcCCCCCCEEEccCc
Q 048289 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTF-PAWLGALSELQVLILRSN 641 (920)
Q Consensus 563 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N 641 (920)
.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .+.++++|++|+|++|++++.. |..++.+++|++|+|++|
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 7777777777 567777777888888888888875 55 6777788888888888887766 777777888888888888
Q ss_pred eeecccCCCcc-cCCCCCCcEEEc
Q 048289 642 RFHGPITYSVT-RFPFPKLRILDL 664 (920)
Q Consensus 642 ~l~~~~~~~~~-~~~l~~L~~L~L 664 (920)
++++..+.... ...+|+|+.||+
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 77766553321 112667777754
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=6.4e-17 Score=193.60 Aligned_cols=125 Identities=24% Similarity=0.261 Sum_probs=61.1
Q ss_pred EecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccc
Q 048289 518 SVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596 (920)
Q Consensus 518 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 596 (920)
+++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+.... |+.|+|++|.++ .+|..|..+++|+.|+|++|.|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444444 44566666777777777777766 3444433333 555555555555 44555555555555555555555
Q ss_pred cccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeeccc
Q 048289 597 GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPI 647 (920)
Q Consensus 597 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 647 (920)
.+|..|.++++|++|+|++|.|+ .+|..|+.+++|++|+|++|++++.+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence 44555555555555555555554 44444555555555555555444433
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=3e-15 Score=149.18 Aligned_cols=152 Identities=21% Similarity=0.308 Sum_probs=77.4
Q ss_pred cCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 048289 176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255 (920)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 255 (920)
+.+++|++|++++|.+. .+| .+..+++|++|++++| .+. .++.+..+++|++|++++|.+.+..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556667777766666 444 4666666666666666 222 1224444555555555555555444455555555555
Q ss_pred EeCcCCcCCccCcccccCCCCCCEEEccCCc-CcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCcc
Q 048289 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNK-FTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS 334 (920)
Q Consensus 256 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 334 (920)
|++++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++.. .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 5555555554444455555555555555554 33 223 3445555555555555544321 34444444444444444
Q ss_pred c
Q 048289 335 L 335 (920)
Q Consensus 335 l 335 (920)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.8e-15 Score=149.43 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=43.4
Q ss_pred CCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEE
Q 048289 201 RLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHL 280 (920)
Q Consensus 201 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 280 (920)
.+++|++|++++| .+. .++.+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n-~i~-~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVT-DLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESS-CCS-CCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCC-Ccc-ChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555554 222 22234444444444444443221 1233444444444444444443333334444444444
Q ss_pred EccCCcCcccchhhhhcCCCCCEEECcCCC
Q 048289 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310 (920)
Q Consensus 281 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 310 (920)
++++|.+++..+..+..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 444444443333334444444444444443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=6.7e-15 Score=145.84 Aligned_cols=138 Identities=23% Similarity=0.260 Sum_probs=110.3
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCc-cccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQ-TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (920)
+.+++++|.++ .+|..+.. .++.|++++|++++..+. .|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 56777777774 45554332 577888888888776664 4788888999999999998888888888999999999999
Q ss_pred cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhh
Q 048289 618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQN 680 (920)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 680 (920)
++++..+..|.++++|++|+|++|++++..|..+ ..+++|+.|++++|++.+..+..++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 9988888888889999999999999988877665 467899999999999998888665543
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=136.44 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=100.9
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR 618 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (920)
+.+++++|.++ .+|..+. ..++.|++++|+++ .+|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45666776665 3444332 23777777777776 456777788888888888888887777778888888888888888
Q ss_pred ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289 619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681 (920)
Q Consensus 619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 681 (920)
+++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+.....++..+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHH
Confidence 887777778888888888888888876544333 4577888888888888877765555443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.2e-14 Score=157.58 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=61.2
Q ss_pred CCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCC-EEEccCCCCCCCchhhhhcCCCCCEE
Q 048289 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE-SIDLRNNQLTGSISNSISELVNLIDL 376 (920)
Q Consensus 298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L 376 (920)
+++|+.+++++|+++.+.+.+|.++++|+++++.+| +...-+.+|..+++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566666666666666555566666666666666665 4433444555666666 666665 4554455566666666666
Q ss_pred EccCCcCCCcchhhhhhhcCCCceEE
Q 048289 377 SLSSNNLSGNVELYMFAELKNLLGLD 402 (920)
Q Consensus 377 ~L~~n~l~~~~~~~~~~~l~~L~~L~ 402 (920)
+++.|.++ .++..+|.++++|+.++
T Consensus 303 ~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EeCCCccC-ccchhhhcCCcchhhhc
Confidence 66666655 45555566666655554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=2.7e-14 Score=138.27 Aligned_cols=129 Identities=22% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCCceEEecCceec-ccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEE
Q 048289 512 PSLNFISVSNNKLS-GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILN 589 (920)
Q Consensus 512 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 589 (920)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+...+ |++|++++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555555 44555555555555555555555533 2233332 44444444444443444444444444444
Q ss_pred ccCCcccccc-CccccCCCCCcEEECCCCcccccCc---hhhcCCCCCCEEEccCce
Q 048289 590 LNDNQLEGSV-PLSLVNCSFLEVLDVGNNRINGTFP---AWLGALSELQVLILRSNR 642 (920)
Q Consensus 590 L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~N~ 642 (920)
+++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4444444321 1344444444444444444443322 234444444444444443
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=2.1e-14 Score=155.76 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=119.9
Q ss_pred CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC--CCcCCC--CcCCCCCC
Q 048289 154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN--LTSVFP--KVNWSSPL 229 (920)
Q Consensus 154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~--~~~~~~--~~~~l~~L 229 (920)
|++|++|++.+ .++.....+|.+|++|+.+++++|.+....+..|..+.++..+....+.. ....+. .+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 45545555666666666666666666544455555555555554433100 000111 33444455
Q ss_pred C-EEEccCCcCcccccccc----cCCCCCCEEeCcCCcCCccCcccc-cCCCCCCEEEccCCcCcccchhhhhcCCCCCE
Q 048289 230 R-FMDLYGCNFMGSIPASL----GNLSQLTYLDLSYNNFSGHIPSTL-SNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303 (920)
Q Consensus 230 ~-~L~L~~n~~~~~~~~~l----~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 303 (920)
+ .+.+.... .++..+ ....+++.+.+.++-.. .....+ ..+++|+.+++++|.++...+..|.++++|+.
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 4 33333221 112111 12344555555543211 111111 23667777777777666555566777777777
Q ss_pred EECcCCCCCCcccccccCCCcCc-eeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEE
Q 048289 304 LDFSNNQLNGPISSSVSRLHSLV-TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLS 377 (920)
Q Consensus 304 L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 377 (920)
+++.+| +..+.+.+|.++++|+ .+++.+ .++..-+.+|..+++|+.++++.|.++...+.+|.++++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 777766 6556666677777777 777766 55544456666777777777777777766666777777777765
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2.5e-14 Score=135.49 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCCceEEecCceec-ccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEE
Q 048289 512 PSLNFISVSNNKLS-GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILN 589 (920)
Q Consensus 512 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 589 (920)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+...+ |++|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666666 56666667777777777777777654 3344333 66666666666555555555556666666
Q ss_pred ccCCccccc-cCccccCCCCCcEEECCCCcccccCc---hhhcCCCCCCEEEcc
Q 048289 590 LNDNQLEGS-VPLSLVNCSFLEVLDVGNNRINGTFP---AWLGALSELQVLILR 639 (920)
Q Consensus 590 L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~ 639 (920)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23455566666666666666654444 345555555555543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=2.1e-13 Score=134.97 Aligned_cols=127 Identities=22% Similarity=0.250 Sum_probs=75.5
Q ss_pred eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCccccc
Q 048289 495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS 574 (920)
Q Consensus 495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~ 574 (920)
.+++++|.++..+...++++++|++++|.++ .+|..|.++++|+.|++++|++ ++.
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i-----------------------~~i 69 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-----------------------STL 69 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC-----------------------CCC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC-----------------------CEe
Confidence 4444444444333333445555555555554 3444555555555555555554 444
Q ss_pred CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeec
Q 048289 575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645 (920)
Q Consensus 575 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 645 (920)
.+..|.++++|+.|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.+
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 45556666677777777777766666667777777777777777775555566677777777777777654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=2.1e-13 Score=133.18 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=73.5
Q ss_pred ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG 573 (920)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~ 573 (920)
+.++++++++.......++++++|++++|++++..+..|..+++|++|++++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------- 66 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----------------------- 66 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------------------
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-----------------------
Confidence 344444444444333334455555555555554444455555555555555555553
Q ss_pred cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecc
Q 048289 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP 646 (920)
Q Consensus 574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 646 (920)
..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 3344455566666666666666655555556666666666666666654444456666666666666666543
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.3e-13 Score=133.39 Aligned_cols=132 Identities=23% Similarity=0.305 Sum_probs=77.2
Q ss_pred CCCCEEEccCCcCc-ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEE
Q 048289 227 SPLRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305 (920)
Q Consensus 227 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 305 (920)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555555 45555566666666666666666643 4566666666666666666655566666666666666
Q ss_pred CcCCCCCCcc-cccccCCCcCceeeccCccccccCC---ccccCCCCCCEEEccCCCCC
Q 048289 306 FSNNQLNGPI-SSSVSRLHSLVTIYLSYNSLNGTIP---SGLFTSPLLESIDLRNNQLT 360 (920)
Q Consensus 306 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 360 (920)
+++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665432 2455556666666666666553322 24455555555555555544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=3.7e-13 Score=131.44 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=112.4
Q ss_pred cCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289 538 IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617 (920)
Q Consensus 538 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (920)
.+.+++++|.++. +|..+. ..++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~-~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSS-CCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCcc-CCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4677778887764 443332 24889999999998877788899999999999999999877788899999999999999
Q ss_pred cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCc
Q 048289 618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLP 674 (920)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 674 (920)
++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9998888889999999999999999986544333 458899999999999999877
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1.4e-13 Score=130.32 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCCCEEEccCCcCc-ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEE
Q 048289 227 SPLRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305 (920)
Q Consensus 227 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 305 (920)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 55666666677777777777776654 5566677777777777777665666666677777777
Q ss_pred CcCCCCCCc-ccccccCCCcCceeeccCccccccCC---ccccCCCCCCEEEcc
Q 048289 306 FSNNQLNGP-ISSSVSRLHSLVTIYLSYNSLNGTIP---SGLFTSPLLESIDLR 355 (920)
Q Consensus 306 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 355 (920)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777766653 23555556666666666665553322 234444555555443
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=6.9e-12 Score=138.73 Aligned_cols=214 Identities=11% Similarity=0.143 Sum_probs=100.7
Q ss_pred CCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCC-CCcCCCCCCCEEEcc
Q 048289 157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF-PKVNWSSPLRFMDLY 235 (920)
Q Consensus 157 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~ 235 (920)
|+.+.+.. .+......+|.+|++|+.++++.|.++. ++.....+.+|+.+.+..+ +...- ..|..+++|+.+++.
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 44444443 3333444556666666666666655552 3322222456666665533 22111 145555555555554
Q ss_pred CCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCc-----ccchhhhhcCCCCCEEECcCCC
Q 048289 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT-----GQIPCIFANLTQLSFLDFSNNQ 310 (920)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~ 310 (920)
.+ +...-..+|.+ .+|+.+.+. +.++.....+|.++++|+.+++.++.+. ...+..|.+|++|+.+.+. +.
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred CC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 42 23222334444 455555552 2344344455555555555555554443 2333455555555555555 23
Q ss_pred CCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCC-CCCEEEccC
Q 048289 311 LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV-NLIDLSLSS 380 (920)
Q Consensus 311 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~ 380 (920)
+..+...+|.++++|+.+.+..+ ++..-..+|..+ +|+.+++.+|.+.......|..++ +++.|.+..
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 44444455555555555555333 332223344444 555555555544433333444442 344444443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=4.8e-15 Score=147.86 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=60.2
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcC-cccccccCCccccCCCCcccccCccc----------c
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP-YSLENLTQLESLDLSSNKVAGEIPWQ----------L 792 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------l 792 (920)
+.|+.|++++|.+++ +| .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 456778888888875 45 57778888888888888876433 46777888888888888887776653 6
Q ss_pred cCCCCCCeeeccCCccc
Q 048289 793 TSLNFLQVLNLSQNQLV 809 (920)
Q Consensus 793 ~~l~~L~~L~ls~N~l~ 809 (920)
..+++|++|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7788888876 55554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=4.2e-13 Score=129.84 Aligned_cols=90 Identities=24% Similarity=0.253 Sum_probs=84.7
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL 803 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 803 (920)
+.++.|+|++|.+++..|..|+.+++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45789999999999999999999999999999999999998888999999999999999999988888999999999999
Q ss_pred cCCcccCCCC
Q 048289 804 SQNQLVGPIP 813 (920)
Q Consensus 804 s~N~l~g~iP 813 (920)
++|++.+..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987655
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=1e-11 Score=138.07 Aligned_cols=327 Identities=13% Similarity=0.130 Sum_probs=149.8
Q ss_pred ccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCc
Q 048289 245 ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHS 324 (920)
Q Consensus 245 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 324 (920)
.+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++..-...|.++.+|+.+.+..+ +......+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 34555555555555432 44333445555555665555433 33233344555555555544432 22233344444433
Q ss_pred CceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcC
Q 048289 325 LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLS 404 (920)
Q Consensus 325 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 404 (920)
++......... ....++..+++|+.+.+.++. ......+|..+.+|+.+.+..+ ++ .+...+|.++..|+.+.+.
T Consensus 142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFP 216 (394)
T ss_dssp SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCC
T ss_pred cccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecC
Confidence 22222211111 122345555666666665432 2233445666666666666554 22 4455566666666666655
Q ss_pred CCccccCccCCCCCCCCcCceEeeeccCCcCCc-hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCc
Q 048289 405 HNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLT 483 (920)
Q Consensus 405 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 483 (920)
.+..... ........|+.+.+... ++.+. ..+..+..++.+.+..+... +.
T Consensus 217 ~~~~~i~---~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~------------------------i~ 268 (394)
T 4fs7_A 217 NSLYYLG---DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR------------------------IG 268 (394)
T ss_dssp TTCCEEC---TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE------------------------EC
T ss_pred CCceEee---hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce------------------------ee
Confidence 5432211 11122234444444322 11111 22333333333333322111 00
Q ss_pred CccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cc
Q 048289 484 GIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LW 562 (920)
Q Consensus 484 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~ 562 (920)
...+..+..++.+......+. ...|..+.+|+.+.+.++ ++..-..+|..+. |+
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccceeccCceeec------------------------cccccccccccccccccc-cceechhhhcCCCCCC
Confidence 111112222332222222111 223444445555544432 3222233344443 55
Q ss_pred eeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEE
Q 048289 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVL 636 (920)
Q Consensus 563 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 636 (920)
.+++.++ ++.+...+|.+|++|+.+++..+ ++.+...+|.+|++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 5555432 44445567777777777777665 55556667777777777777654 22 234456677766654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=2.5e-11 Score=134.33 Aligned_cols=178 Identities=11% Similarity=0.125 Sum_probs=83.2
Q ss_pred CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCC
Q 048289 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301 (920)
Q Consensus 222 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 301 (920)
.|..+++|+.+++..|.+......+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++..-..+|.+ .+|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 344444444444444444433333333 345555555432 43344445555555555555543 33233344444 455
Q ss_pred CEEECcCCCCCCcccccccCCCcCceeeccCcccc-----ccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEE
Q 048289 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN-----GTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDL 376 (920)
Q Consensus 302 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 376 (920)
+.+.+. +.+..+...+|.++++|+.+++.++.+. ..-+..|..+++|+.+.+.+ .++.....+|.+|.+|+.+
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 555552 3344344455555555555555554432 12233444555555555552 2443444455555555555
Q ss_pred EccCCcCCCcchhhhhhhcCCCceEEcCCCcc
Q 048289 377 SLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408 (920)
Q Consensus 377 ~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 408 (920)
.+..+ ++ .+...+|.++ +|+.+++.+|..
T Consensus 329 ~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 329 TIPAN-VT-QINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EECTT-CC-EECTTSSSSS-CCCEEEECCSSC
T ss_pred EECcc-cc-EEcHHhCCCC-CCCEEEEcCCCC
Confidence 55433 22 3444455555 555555555543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=1.6e-14 Score=144.09 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=90.6
Q ss_pred cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681 (920)
Q Consensus 602 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 681 (920)
.+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|... ..+++|+.|++++|++++ +| . +..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~L~~L~L~~N~l~~-l~-~-~~~- 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADTLEELWISYNQIAS-LS-G-IEK- 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHHCSEEEEEEEECCC-HH-H-HHH-
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCcCCEEECcCCcCCc-CC-c-ccc-
Confidence 55566666666666666664 44 5566666666666666665 233221 224567777777777765 33 1 222
Q ss_pred hccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch-hhhhccCCCceEeccCccc
Q 048289 682 QAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP-EVVGKLNSLKGLNFSHNKL 760 (920)
Q Consensus 682 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l 760 (920)
++.|+.|++++|.+++..+ ..+..+++|+.|++++|++
T Consensus 114 -----------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 -----------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -----------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -----------------------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 3567889999999986433 5788999999999999999
Q ss_pred cCCcCcc----------cccccCCccccCCCCcccc
Q 048289 761 TGLIPYS----------LENLTQLESLDLSSNKVAG 786 (920)
Q Consensus 761 ~~~ip~~----------~~~l~~L~~L~Ls~N~l~g 786 (920)
++.+|.. +..+++|+.|| +|.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8887764 88899999987 666653
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=1.3e-12 Score=126.73 Aligned_cols=89 Identities=27% Similarity=0.265 Sum_probs=82.7
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL 803 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 803 (920)
+.++.|+|++|.+++..|..|+.+++|+.|+|++|+|++..+..|..+++|++|||++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45789999999999999999999999999999999999988888899999999999999999887778999999999999
Q ss_pred cCCcccCCC
Q 048289 804 SQNQLVGPI 812 (920)
Q Consensus 804 s~N~l~g~i 812 (920)
++|++....
T Consensus 113 ~~N~~~c~~ 121 (174)
T 2r9u_A 113 YNNPWDCEC 121 (174)
T ss_dssp CSSCBCTTB
T ss_pred CCCCccccc
Confidence 999998653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.1e-12 Score=127.92 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=101.8
Q ss_pred cccCCCCcCeEeCCCCcCCCcCccccccc-ccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCC
Q 048289 531 SFCNMSSIFYVNLSNNSLNGMIPPCLANS-SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFL 609 (920)
Q Consensus 531 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 609 (920)
.+.++++|+.|++++|.++. +|...... .|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45667788888888888874 35444444 488888888888865 577888889999999999886655666888899
Q ss_pred cEEECCCCcccccCch--hhcCCCCCCEEEccCceeecccCCC--cccCCCCCCcEEEccCCcCcC
Q 048289 610 EVLDVGNNRINGTFPA--WLGALSELQVLILRSNRFHGPITYS--VTRFPFPKLRILDLSNNEFTG 671 (920)
Q Consensus 610 ~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 671 (920)
++|++++|+++ .+|. .+..+++|++|++++|++... |.. .....+++|+.||+++|....
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999886 4554 788888999999999988743 331 012457889999999887653
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.35 E-value=4e-11 Score=133.35 Aligned_cols=288 Identities=11% Similarity=0.064 Sum_probs=128.2
Q ss_pred CccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHh
Q 048289 73 SLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ 152 (920)
Q Consensus 73 ~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~ 152 (920)
+|.++++|+.+.+..+ ++.. -..+|.+|++|+.+++..+ ++..-..++.++++|+.+.+..+ +..++..+ +.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a----F~ 137 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA----FK 137 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT----TT
T ss_pred HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee----ee
Confidence 6777888888888643 3321 1345777888888888654 44334456677777777666554 33222222 22
Q ss_pred cCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232 (920)
Q Consensus 153 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 232 (920)
++..++...... .......+|.++++|+.+.+.++. .......|..+.+|+.+.+..+
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~------------------- 195 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN------------------- 195 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-------------------
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-------------------
Confidence 232222111111 111223345555555555554332 1122334444555555544433
Q ss_pred EccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312 (920)
Q Consensus 233 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (920)
+......++.++..|+.+.+..+... +.........|+.+.+... ++......|..+..|+.+.+..+..
T Consensus 196 ------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~- 265 (394)
T 4fs7_A 196 ------LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL- 265 (394)
T ss_dssp ------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-
T ss_pred ------ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-
Confidence 12122233444444444444332211 1111222334444444322 1112223344445555555444322
Q ss_pred CcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhh
Q 048289 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392 (920)
Q Consensus 313 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 392 (920)
......|..+..++.+......+. ...+..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++ .+...+|
T Consensus 266 ~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF 339 (394)
T 4fs7_A 266 RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSF 339 (394)
T ss_dssp EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTT
T ss_pred eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhc
Confidence 133334444444544444333221 123334455555555433 33233344555555555555432 22 3444555
Q ss_pred hhcCCCceEEcCCC
Q 048289 393 AELKNLLGLDLSHN 406 (920)
Q Consensus 393 ~~l~~L~~L~Ls~n 406 (920)
.+|.+|+.+.+..+
T Consensus 340 ~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 340 RGCTSLSNINFPLS 353 (394)
T ss_dssp TTCTTCCEECCCTT
T ss_pred cCCCCCCEEEECcc
Confidence 55555555555443
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.5e-12 Score=126.90 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=97.0
Q ss_pred CCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEE
Q 048289 511 PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILN 589 (920)
Q Consensus 511 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 589 (920)
+++|++|++++|.++.. |......++|++|++++|.+++. ..+...+ |+.|++++|.+++..+..|..+++|+.|+
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34566666777766633 43222334788888888888764 4455555 88888888888876666668889999999
Q ss_pred ccCCccccccCc--cccCCCCCcEEECCCCcccccCchh----hcCCCCCCEEEccCceeec
Q 048289 590 LNDNQLEGSVPL--SLVNCSFLEVLDVGNNRINGTFPAW----LGALSELQVLILRSNRFHG 645 (920)
Q Consensus 590 L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~ 645 (920)
+++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|....
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999996 4555 7888999999999999998 45553 8889999999999997653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1e-11 Score=119.97 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=44.6
Q ss_pred CcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEE
Q 048289 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRIL 662 (920)
Q Consensus 583 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 662 (920)
++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF--DNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh--cCCCCCCEE
Confidence 344444455554444444444445555555555555554444444455555555555555544333222 234556666
Q ss_pred EccCCcCcCCCc
Q 048289 663 DLSNNEFTGVLP 674 (920)
Q Consensus 663 ~Ls~N~l~~~~p 674 (920)
+|++|++++..+
T Consensus 108 ~L~~N~~~c~c~ 119 (170)
T 3g39_A 108 WLLNNPWDCACS 119 (170)
T ss_dssp ECCSSCBCTTBG
T ss_pred EeCCCCCCCCch
Confidence 666666665544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=2.4e-11 Score=117.77 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=47.8
Q ss_pred CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR 618 (920)
Q Consensus 539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (920)
+.+++++|.++ .+|..+. ..|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 45555555553 3333322 225555555555554445555555555555555555554433444455555555555555
Q ss_pred ccccCchhhcCCCCCCEEEccCce
Q 048289 619 INGTFPAWLGALSELQVLILRSNR 642 (920)
Q Consensus 619 l~~~~p~~l~~l~~L~~L~L~~N~ 642 (920)
+++..+..|..+++|++|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 553333334444444444444433
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=5.7e-13 Score=146.02 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=35.9
Q ss_pred ccccEEEcCCCcCCCC----chhhhhccCCCceEeccCccccCC----cCcccccccCCccccCCCCcccccCcccc
Q 048289 724 NIFTTIDLSGNKFQGR----IPEVVGKLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAGEIPWQL 792 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l 792 (920)
+.|++|||++|.++.. ++..+...+.|+.|+|++|.|++. ++..+...++|++|||++|.|+..-...+
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3455666666665532 244445555666666666666542 22333344566666666666554433333
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.7e-12 Score=142.17 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=71.9
Q ss_pred ccccEEEcCCCcCCC----CchhhhhccCCCceEeccCccccCC----cCcccccccCCccccCCCCccccc----Cccc
Q 048289 724 NIFTTIDLSGNKFQG----RIPEVVGKLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAGE----IPWQ 791 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~ 791 (920)
+.|++|+|++|.++. .++..+...++|++|+|++|.|++. ++..+...++|++|||++|.|+.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 568999999999875 3556668899999999999999864 366778889999999999999863 4455
Q ss_pred ccCCCCCCeeeccCCcccC
Q 048289 792 LTSLNFLQVLNLSQNQLVG 810 (920)
Q Consensus 792 l~~l~~L~~L~ls~N~l~g 810 (920)
+...+.|++||+++|+++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 6677999999999999864
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.12 E-value=4.9e-09 Score=116.41 Aligned_cols=331 Identities=11% Similarity=0.118 Sum_probs=165.5
Q ss_pred CcccccCCC-CCCEEEccCCcCcccchhhhhcCCCCCEEECcCCC---CCCcccccccCCCcCceeeccCccccccCCcc
Q 048289 267 IPSTLSNLQ-QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ---LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342 (920)
Q Consensus 267 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (920)
-..+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++......
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345566663 5777777654 554556677777888887776653 44445566667777776665543 22122344
Q ss_pred ccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCc
Q 048289 343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPY 422 (920)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 422 (920)
+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++ .+...+|.. .+|+.+.+..+.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~--------------- 193 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKV--------------- 193 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTC---------------
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcc---------------
Confidence 455566666666433 22233344555555555555433 11 223333322 233333333221
Q ss_pred CceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCc
Q 048289 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS 502 (920)
Q Consensus 423 L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~ 502 (920)
..--..++..+..++........... +...+.. .... .........
T Consensus 194 ----------~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~-~~~~-------------------~~~~~~~~~--- 239 (394)
T 4gt6_A 194 ----------TRIGTNAFSECFALSTITSDSESYPA-IDNVLYE-KSAN-------------------GDYALIRYP--- 239 (394)
T ss_dssp ----------CEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEE-ECTT-------------------SCEEEEECC---
T ss_pred ----------cccccchhhhccccceeccccccccc-ccceeec-cccc-------------------ccccccccc---
Confidence 11111233333334333332222110 0000000 0000 000000000
Q ss_pred CCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccC
Q 048289 503 LKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSK 581 (920)
Q Consensus 503 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~ 581 (920)
....+..+.+. +.++.....+|.++..|+.+.+.++... .-...+..+. |+.+.+. +.++.+...+|.+
T Consensus 240 -------~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~ 309 (394)
T 4gt6_A 240 -------SQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG 309 (394)
T ss_dssp -------TTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT
T ss_pred -------cccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecC
Confidence 00112222221 1223334556777777777777654332 3344555555 7777775 4555566678888
Q ss_pred CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661 (920)
Q Consensus 582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 661 (920)
|.+|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++......|.++++|+.+++.++..... .+.....|+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~ 382 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQN 382 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC--
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCE
Confidence 888888888754 65566678888888888888654 6655667788888888888888754321 1234567777
Q ss_pred EEccCCcC
Q 048289 662 LDLSNNEF 669 (920)
Q Consensus 662 L~Ls~N~l 669 (920)
+.+..|.+
T Consensus 383 i~i~~~~~ 390 (394)
T 4gt6_A 383 LPVAPGSI 390 (394)
T ss_dssp --------
T ss_pred EEeCCCCE
Confidence 77766544
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1e-08 Score=113.77 Aligned_cols=327 Identities=12% Similarity=0.090 Sum_probs=144.8
Q ss_pred CccCCC-CCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCC---CcccCCccccCCCCCCEEEcCCCCCCCCCCchHH
Q 048289 73 SLFSLP-HLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS---FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLK 148 (920)
Q Consensus 73 ~l~~l~-~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~---~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~ 148 (920)
+|.+++ .|+.+.+..+ ++.. -..+|.+|++|+.+.++.+. ++..-..+|..+.+|+.+.+..+ +..++..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~--- 131 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE--- 131 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT---
T ss_pred hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh---
Confidence 565653 4777777643 2221 23457777777777776542 43333445666666766665544 3322222
Q ss_pred HHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCC
Q 048289 149 ALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP 228 (920)
Q Consensus 149 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 228 (920)
.+..+.+|+.+.+... +.......|..+..|+.+.+..+ +. .+.........|+.+.+..+ ........+..+..
T Consensus 132 -aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 132 -AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFA 206 (394)
T ss_dssp -TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred -hhhhhcccccccccce-eeeecccceecccccccccccce-ee-EeccccccccceeEEEECCc-ccccccchhhhccc
Confidence 2344555555555432 22233344555555555555443 22 11111112344555555433 11111123444444
Q ss_pred CCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC
Q 048289 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308 (920)
Q Consensus 229 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 308 (920)
+.................+........ ....+.....+..+.+.. .+...-..+|..+..|+.+.+..
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred cceecccccccccccceeecccccccc-----------cccccccccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence 444433322211100000000000000 000011112233333321 12222334555666666666654
Q ss_pred CCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcch
Q 048289 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388 (920)
Q Consensus 309 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 388 (920)
+.. .+...+|.++++|+.+.+.. .+...-...|..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++ .+.
T Consensus 275 ~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~ 349 (394)
T 4gt6_A 275 SVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP 349 (394)
T ss_dssp TCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC
T ss_pred ccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh
Confidence 332 23445556666666666642 233223344555666666666543 44344456666777777766543 33 455
Q ss_pred hhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeecc
Q 048289 389 LYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC 431 (920)
Q Consensus 389 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~ 431 (920)
..+|.+|.+|+.+++.++.... .....+..|+.+.+..+
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC--------
T ss_pred HhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCC
Confidence 6667777777777776654332 12234455665555443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=8.7e-10 Score=120.30 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=73.3
Q ss_pred eecCCC-cccccCCccccCCCcccEEEccC-CccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCc
Q 048289 564 LDMRMN-NFHGSIPQTFSKGSRLTILNLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641 (920)
Q Consensus 564 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 641 (920)
++++++ +++. +|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5553 444 66666777777774 7777666666777777777777777777766667777777777777777
Q ss_pred eeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289 642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681 (920)
Q Consensus 642 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 681 (920)
++++..+..+. .+ .|+.|+|++|++.+.....++..+
T Consensus 91 ~l~~~~~~~~~--~~-~L~~l~l~~N~~~c~c~l~~~~~~ 127 (347)
T 2ifg_A 91 ALESLSWKTVQ--GL-SLQELVLSGNPLHCSCALRWLQRW 127 (347)
T ss_dssp CCSCCCSTTTC--SC-CCCEEECCSSCCCCCGGGHHHHHH
T ss_pred ccceeCHHHcc--cC-CceEEEeeCCCccCCCccHHHHHH
Confidence 77654333321 22 377888888888776665555544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=3.6e-10 Score=123.33 Aligned_cols=87 Identities=23% Similarity=0.192 Sum_probs=63.6
Q ss_pred cccccEEEcCC-CcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCee
Q 048289 723 LNIFTTIDLSG-NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVL 801 (920)
Q Consensus 723 ~~~l~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 801 (920)
+..|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++.+|..|++|++|++|||++|+|++..|..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34577777775 777776667777777777777777777777777777777777777777777766666666655 7777
Q ss_pred eccCCcccC
Q 048289 802 NLSQNQLVG 810 (920)
Q Consensus 802 ~ls~N~l~g 810 (920)
++++|++..
T Consensus 109 ~l~~N~~~c 117 (347)
T 2ifg_A 109 VLSGNPLHC 117 (347)
T ss_dssp ECCSSCCCC
T ss_pred EeeCCCccC
Confidence 777777664
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=9.1e-09 Score=111.50 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccC--CCCCCCEEEcc
Q 048289 147 LKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF--RLPNLQNLILS 211 (920)
Q Consensus 147 l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~ 211 (920)
+...+..+++|+.|.++++.-. .++. +. +++|++|++..|.+.......+. .+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4455566666666666655211 1122 22 56677777766655432222222 56666666664
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=7.8e-07 Score=98.02 Aligned_cols=300 Identities=13% Similarity=0.091 Sum_probs=148.7
Q ss_pred ccCCCCCCEEECCCCCCCCCCC-CCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHh
Q 048289 74 LFSLPHLQILNLAFNDFNYSYI-SPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ 152 (920)
Q Consensus 74 l~~l~~L~~L~Ls~~~~~~~~i-~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~ 152 (920)
+....+|+.+.+... ++. | ..+|.+|.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +..++..++ .
T Consensus 42 ~~~~~~i~~v~ip~~-vt~--Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF----~ 111 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITS--IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVF----Q 111 (379)
T ss_dssp GGGGGGCSEEEECTT-EEE--ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTT----T
T ss_pred cccccCCEEEEeCCC-ccC--hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecccee----c
Confidence 344556777776543 221 2 235777777777777543 443334455555 5666665544 333333222 1
Q ss_pred cCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232 (920)
Q Consensus 153 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 232 (920)
. .+|+.+.+..+ +.......|.++ +|+.+.+..+ ++..-...+..+..++.+.+..+. .........
T Consensus 112 ~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~-~~~~~~~~~-------- 178 (379)
T 4h09_A 112 G-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN-KNYVAENYV-------- 178 (379)
T ss_dssp T-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC-SSEEEETTE--------
T ss_pred c-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccccccccccc-ceeecccce--------
Confidence 2 24555555432 111122222222 2333333221 111222333344444444433321 000000000
Q ss_pred EccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312 (920)
Q Consensus 233 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (920)
. ..........+..+..+..+.+..... ......+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++
T Consensus 179 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~ 252 (379)
T 4h09_A 179 L---YNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT 252 (379)
T ss_dssp E---EETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC
T ss_pred e---cccccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc
Confidence 0 000011222344455555555544322 233445556667777776544 33344455667777777777654 44
Q ss_pred CcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhh
Q 048289 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392 (920)
Q Consensus 313 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 392 (920)
.+...+|.++.+|+.+.+..+ +...-...+..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++ .+...+|
T Consensus 253 ~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF 329 (379)
T 4h09_A 253 SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAF 329 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT
T ss_pred EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHh
Confidence 455566777777777776543 33233345566777777777776666555667777777777777543 33 5566677
Q ss_pred hhcCCCceEEcCC
Q 048289 393 AELKNLLGLDLSH 405 (920)
Q Consensus 393 ~~l~~L~~L~Ls~ 405 (920)
.+|.+|+.+.+..
T Consensus 330 ~~C~~L~~i~ip~ 342 (379)
T 4h09_A 330 KNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCCCCCCT
T ss_pred hCCCCCCEEEECC
Confidence 7777777666644
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=4.7e-09 Score=113.77 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=29.5
Q ss_pred ccccEEEcCCCcCCCCchhhhh---ccCCCceEeccCccccCC----cCcccccccCCccccCCCCcccc
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVG---KLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAG 786 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g 786 (920)
+.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++.
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3445555555554433332222 244555555555555442 23333445555555555555543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.68 E-value=7.7e-07 Score=98.09 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=31.5
Q ss_pred ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289 577 QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640 (920)
Q Consensus 577 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 640 (920)
.+|.++++|+.+.+.++.++.+...+|.+|++|+.+.|..+ ++......|.++++|+.+.+..
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 44555555555555555554444455555555555555433 3333344455555555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.1e-07 Score=97.53 Aligned_cols=84 Identities=25% Similarity=0.324 Sum_probs=62.4
Q ss_pred EEcCCCcC---CCCchhhhhccCCCceEeccCccccC--CcCcccccccCCccccCCCCcccccCcccccCCC--CCCee
Q 048289 729 IDLSGNKF---QGRIPEVVGKLNSLKGLNFSHNKLTG--LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLN--FLQVL 801 (920)
Q Consensus 729 L~Ls~N~l---~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L 801 (920)
++++.|.. .+.++....+++.|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 67777743 22333333668889999999999988 5567788889999999999998875 2344444 88999
Q ss_pred eccCCcccCCCCC
Q 048289 802 NLSQNQLVGPIPQ 814 (920)
Q Consensus 802 ~ls~N~l~g~iP~ 814 (920)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999887773
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=6.7e-08 Score=94.33 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=40.0
Q ss_pred cCCCCCCEEECCCC-CCCCC---CCCCcCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCCCCCCCCch
Q 048289 75 FSLPHLQILNLAFN-DFNYS---YISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPV 146 (920)
Q Consensus 75 ~~l~~L~~L~Ls~~-~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 146 (920)
...+.|++|+|++| .+... .+...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.+...+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34455555555555 44321 0122233444555555555554421 2222333344555555555443322223
Q ss_pred HHHHHhcCCCCCEEEc--CCCCCC
Q 048289 147 LKALVQNLNELQELVL--NSVDMS 168 (920)
Q Consensus 147 l~~~~~~l~~L~~L~L--~~~~~~ 168 (920)
+...+...+.|++|++ ++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 3334444444444444 444443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=1.7e-07 Score=91.39 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=81.9
Q ss_pred CcCCCCCCCCEEeCCCC-CCccc----CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCc
Q 048289 97 PGFTRFPNLAHLNLSVS-SFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171 (920)
Q Consensus 97 ~~~~~l~~L~~L~Ls~n-~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 171 (920)
..+...+.|++|+|++| .+.+. +...+...++|++|+|++|.+...+...+...+...++|++|+|++|.+....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34677889999999998 87642 44556777889999999997765445556677777888888888888887653
Q ss_pred ----chhccCCCCCCEEEc--cCCcCCCC----CCcccCCCCCCCEEEccCC
Q 048289 172 ----PSFLTNLSSLTSLDL--GNCGLQGS----IPENIFRLPNLQNLILSYN 213 (920)
Q Consensus 172 ----~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n 213 (920)
...+...++|++|++ ++|.+... +...+...+.|++|++++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 455666677888888 66776643 2233344566666666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=4.3e-07 Score=93.03 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=68.4
Q ss_pred hcccccEEEcCCCcCCC--CchhhhhccCCCceEeccCccccCCcCccccccc--CCccccCCCCcccccCcc-------
Q 048289 722 VLNIFTTIDLSGNKFQG--RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT--QLESLDLSSNKVAGEIPW------- 790 (920)
Q Consensus 722 ~~~~l~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~L~Ls~N~l~g~ip~------- 790 (920)
.++.|+.|+||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 36789999999999998 5678889999999999999999986 4566666 999999999999988773
Q ss_pred cccCCCCCCeee
Q 048289 791 QLTSLNFLQVLN 802 (920)
Q Consensus 791 ~l~~l~~L~~L~ 802 (920)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467888999887
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=4.6e-06 Score=78.91 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=47.5
Q ss_pred CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc---CCCCCEEEcCCCC-CCCCcchhccCC
Q 048289 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN---LNELQELVLNSVD-MSYEVPSFLTNL 178 (920)
Q Consensus 103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~---l~~L~~L~L~~~~-~~~~~~~~l~~l 178 (920)
..|++||++++.+++.--..+.++++|++|+|++|.. +.+.++...-.. +++|++|++++|. +++..-..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~--ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY--IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT--CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc--cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4566666666666655445566677777777777632 222333332221 2356666666653 555444555556
Q ss_pred CCCCEEEccCCc
Q 048289 179 SSLTSLDLGNCG 190 (920)
Q Consensus 179 ~~L~~L~Ls~n~ 190 (920)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 666666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=3.7e-05 Score=72.70 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=5.7
Q ss_pred CCCCCCEEEccCC
Q 048289 345 TSPLLESIDLRNN 357 (920)
Q Consensus 345 ~l~~L~~L~L~~n 357 (920)
.+++|++|++++|
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.00 E-value=0.00014 Score=70.06 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=30.1
Q ss_pred ccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcc----hhccCCCCCCEEEccC
Q 048289 123 ISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP----SFLTNLSSLTSLDLGN 188 (920)
Q Consensus 123 l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~Ls~ 188 (920)
+..-+.|+.|+|++|.+.+.....+...+..-+.|++|+|++|.|..... ..+..-+.|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 33344455555555544433334444444444555555555555543322 2233334455555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00032 Score=67.68 Aligned_cols=116 Identities=10% Similarity=0.011 Sum_probs=75.4
Q ss_pred cCCCCCCEEECCCC-CCCCC---CCCCcCCCCCCCCEEeCCCCCCcccC----CccccCCCCCCEEEcCCCCCCCCCCch
Q 048289 75 FSLPHLQILNLAFN-DFNYS---YISPGFTRFPNLAHLNLSVSSFSGQI----PAEISHLSKLVSLDLSGNSQLGLDTPV 146 (920)
Q Consensus 75 ~~l~~L~~L~Ls~~-~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 146 (920)
..-+.|++|+|+++ .+... .+-.++..-+.|+.|+|++|.+.+.- ...+..-+.|++|+|++|.+...+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34577888888875 65432 12344566778888888888887432 333445677888888888776655556
Q ss_pred HHHHHhcCCCCCEEEcCCC---CCCCC----cchhccCCCCCCEEEccCCc
Q 048289 147 LKALVQNLNELQELVLNSV---DMSYE----VPSFLTNLSSLTSLDLGNCG 190 (920)
Q Consensus 147 l~~~~~~l~~L~~L~L~~~---~~~~~----~~~~l~~l~~L~~L~Ls~n~ 190 (920)
+...+..-+.|++|+|+++ .+... +...+..-+.|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6667777777888888765 33322 23445555677777776554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0035 Score=56.34 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=37.0
Q ss_pred cEEEcCCCcCC-CCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289 727 TTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785 (920)
Q Consensus 727 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 785 (920)
+.+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777776 34554332 35677777777777666666677777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.06 E-value=0.0086 Score=53.76 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=44.5
Q ss_pred ceEecccCcCC--CCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCC
Q 048289 494 RYLDLRSNSLK--GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549 (920)
Q Consensus 494 ~~L~L~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (920)
..++.+++.++ ..+...+++++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777776 444456778999999999998877888888999999999998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.61 E-value=42 Score=27.76 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=25.2
Q ss_pred ccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616 (920)
Q Consensus 571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (920)
++.+-..+|.+|++|+.+.|-.+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444556666666666666543 3334455566666666665544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.91 E-value=33 Score=28.37 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCc
Q 048289 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641 (920)
Q Consensus 592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 641 (920)
+..++.+-..+|.+|++|+.+.|..+ ++..-...|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566666788999999999999876 44456677889999998888664
Done!