BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048290
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
NC+ L + L N GEIP W G L+NL +L L +N F GNIP +L + LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 61 LNIISGKIPKCF 72
N+ +G IP
Sbjct: 547 TNLFNGTIPAAM 558
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
L +L+LG N G IP G+ L+ L +L L SNK G IP + L + +DLS N +
Sbjct: 658 LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 65 SGKIPK 70
SG IP+
Sbjct: 717 SGPIPE 722
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
N + LD+ N G IP G S+ L +L+L N G+IP ++ L + +LDLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 61 LNIISGKIPKCFNNFSAMTYERCSN 85
N + G+IP+ + + +T SN
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSN 713
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
NCS+L L L N G IP+ G SL L L L N G IP +L ++ ++ L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 61 LNIISGKIPKCFNNFSAMTYERCSN 85
N ++G+IP +N + + + SN
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSN 499
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 5 LRVLDLGKNAFFGEIPTWTGESLQN----LIVLSLKSNKFHGNIPYQLCH--LGFIQVLD 58
L+VLDL N F GE+P ESL N L+ L L SN F G I LC +Q L
Sbjct: 345 LKVLDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 59 LSLNIISGKIPKCFNNFSAM 78
L N +GKIP +N S +
Sbjct: 401 LQNNGFTGKIPPTLSNCSEL 420
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Query: 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP------------------ 45
L+ L L +N F GEIP + + L L L N F+G +P
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 46 -------YQLCHLGFIQVLDLSLNIISGKIPKCFNNFSA--MTYERCSN 85
L + ++VLDLS N SG++P+ N SA +T + SN
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-GFIQVLDLS 60
C++L++L++ N F G IP +SLQ LSL NKF G IP L + LDLS
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKSLQ---YLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 61 LNIISGKIPKCF 72
N G +P F
Sbjct: 303 GNHFYGAVPPFF 314
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 3 SQLRVLDLGKNAFFGEI-PTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSL 61
+ L LDL N F G I P L L L++N F G IP L + + L LS
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 62 NIISGKIPKCFNNFSAM 78
N +SG IP + S +
Sbjct: 428 NYLSGTIPSSLGSLSKL 444
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 13 NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-GFIQVLDLSLNIISGKI 68
N F GE+P T ++ L VL L N+F G +P L +L + LDLS N SG I
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
L+ L L N F G+IP T + L+ L L N G IP L L ++ L L LN++
Sbjct: 396 LQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 65 SGKIPK 70
G+IP+
Sbjct: 455 EGEIPQ 460
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 3 SQLRVLDLGKNAFFGEIPTWTG-ESLQNLIVLSLKSN--KFHGNIPYQLCHLGFIQVLDL 59
+ L LDL +N+ G + T T S L L++ SN F G + L L ++VLDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 60 SLNIISG 66
S N ISG
Sbjct: 159 SANSISG 165
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
NC+ L + L N GEIP W G L+NL +L L +N F GNIP +L + LDL+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 61 LNIISGKIPKCF 72
N+ +G IP
Sbjct: 544 TNLFNGTIPAAM 555
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 7 VLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG 66
+L+LG N G IP G+ L+ L +L L SNK G IP + L + +DLS N +SG
Sbjct: 657 ILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 67 KIPK 70
IP+
Sbjct: 716 PIPE 719
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
N + LD+ N G IP G S+ L +L+L N G+IP ++ L + +LDLS
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 61 LNIISGKIPKCFNNFSAMTYERCSN 85
N + G+IP+ + + +T SN
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSN 710
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
NCS+L L L N G IP+ G SL L L L N G IP +L ++ ++ L L
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 61 LNIISGKIPKCFNNFSAMTYERCSN 85
N ++G+IP +N + + + SN
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSN 496
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCH--LGFIQVLDLSLN 62
L+VLDL N F GE+P +L+ L L SN F G I LC +Q L L N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 63 IISGKIPKCFNNFSAM 78
+GKIP +N S +
Sbjct: 402 GFTGKIPPTLSNCSEL 417
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Query: 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP------------------ 45
L+ L L +N F GEIP + + L L L N F+G +P
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 46 -------YQLCHLGFIQVLDLSLNIISGKIPKCFNNFSA--MTYERCSN 85
L + ++VLDLS N SG++P+ N SA +T + SN
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-GFIQVLDLS 60
C++L++L++ N F G IP +SLQ LSL NKF G IP L + LDLS
Sbjct: 243 CTELKLLNISSNQFVGPIPPLPLKSLQ---YLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 61 LNIISGKIPKCF 72
N G +P F
Sbjct: 300 GNHFYGAVPPFF 311
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 3 SQLRVLDLGKNAFFGEI-PTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSL 61
+ L LDL N F G I P L L L++N F G IP L + + L LS
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 62 NIISGKIPKCFNNFSAM 78
N +SG IP + S +
Sbjct: 425 NYLSGTIPSSLGSLSKL 441
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 13 NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-GFIQVLDLSLNIISGKI 68
N F GE+P T ++ L VL L N+F G +P L +L + LDLS N SG I
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
L+ L L N F G+IP T + L+ L L N G IP L L ++ L L LN++
Sbjct: 393 LQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 65 SGKIPK 70
G+IP+
Sbjct: 452 EGEIPQ 457
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 3 SQLRVLDLGKNAFFGEIPTWTG-ESLQNLIVLSLKSN--KFHGNIPYQLCHLGFIQVLDL 59
+ L LDL +N+ G + T T S L L++ SN F G + L L ++VLDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 60 SLNIISG 66
S N ISG
Sbjct: 156 SANSISG 162
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 67/185 (36%), Gaps = 27/185 (14%)
Query: 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG-FIQVLDLSLNI 63
L LD NA G +P SL NL+ ++ N+ G IP + +S N
Sbjct: 127 LVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 64 ISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKS 123
++GKIP F N + + N G A ++F N L G K+
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 124 TLGL-------------------------VRCLDLSRKIPLGTQLQSFNASVYAGNLELC 158
GL V +L +IP G LQ F+ S YA N LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 159 GLPLA 163
G PL
Sbjct: 306 GSPLP 310
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
+QL L + G IP + + ++ L+ L N G +P + L + + N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 63 IISGKIPKCFNNFS----AMTYER 82
ISG IP + +FS +MT R
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISR 183
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 28.1 bits (61), Expect = 5.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 65 SGKIPKCFNNFSAMTYERCSNPTIGFAK 92
SG C+ NF A C NP GF K
Sbjct: 3 SGSSGDCYKNFVAKKCAGCKNPITGFGK 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,032,794
Number of Sequences: 62578
Number of extensions: 259628
Number of successful extensions: 570
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 33
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)