Query 048290
Match_columns 253
No_of_seqs 284 out of 2127
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 8.8E-20 1.9E-24 179.8 12.0 147 2-161 451-611 (968)
2 PLN03150 hypothetical protein; 99.8 5E-18 1.1E-22 159.5 12.5 118 5-167 420-538 (623)
3 PLN00113 leucine-rich repeat r 99.6 1.5E-14 3.2E-19 142.9 12.2 148 2-161 403-588 (968)
4 PLN03150 hypothetical protein; 99.3 3.9E-12 8.4E-17 119.9 8.4 74 1-75 440-513 (623)
5 KOG0617 Ras suppressor protein 99.3 1.6E-13 3.4E-18 106.3 -2.9 140 2-156 32-185 (264)
6 KOG4194 Membrane glycoprotein 99.1 6.3E-12 1.4E-16 113.2 -0.6 80 2-82 268-347 (873)
7 PF13855 LRR_8: Leucine rich r 99.1 8.7E-11 1.9E-15 76.8 2.9 61 3-64 1-61 (61)
8 KOG4194 Membrane glycoprotein 99.0 6.3E-11 1.4E-15 106.9 1.8 155 1-163 291-458 (873)
9 KOG0617 Ras suppressor protein 99.0 1.2E-11 2.5E-16 96.1 -2.7 118 2-135 55-182 (264)
10 KOG0444 Cytoskeletal regulator 99.0 6.7E-11 1.4E-15 107.7 0.8 147 2-163 221-381 (1255)
11 KOG0444 Cytoskeletal regulator 99.0 9E-11 2E-15 106.8 1.3 128 2-135 102-231 (1255)
12 KOG0618 Serine/threonine phosp 98.9 2.2E-10 4.7E-15 108.0 -0.5 125 2-157 358-489 (1081)
13 KOG0472 Leucine-rich repeat pr 98.8 2.2E-09 4.7E-14 93.3 1.8 118 9-156 418-540 (565)
14 KOG0472 Leucine-rich repeat pr 98.7 3.5E-09 7.5E-14 92.1 1.4 103 2-135 434-537 (565)
15 PF13855 LRR_8: Leucine rich r 98.7 7.4E-09 1.6E-13 67.6 2.5 55 28-82 1-55 (61)
16 PF14580 LRR_9: Leucine-rich r 98.7 1.5E-08 3.3E-13 80.2 4.3 76 2-82 18-94 (175)
17 KOG0532 Leucine-rich repeat (L 98.7 2.8E-09 6E-14 96.1 -0.6 116 2-135 120-243 (722)
18 KOG0618 Serine/threonine phosp 98.7 4E-09 8.7E-14 99.7 -0.3 82 1-86 381-464 (1081)
19 PF14580 LRR_9: Leucine-rich r 98.6 4.8E-08 1E-12 77.4 4.3 77 2-82 41-119 (175)
20 KOG1259 Nischarin, modulator o 98.5 1.8E-08 4E-13 84.8 0.0 76 2-82 283-358 (490)
21 KOG4237 Extracellular matrix p 98.5 1.1E-07 2.4E-12 82.6 3.7 81 1-82 272-352 (498)
22 PLN03210 Resistant to P. syrin 98.5 8E-07 1.7E-11 89.7 10.0 78 2-82 633-710 (1153)
23 PLN03210 Resistant to P. syrin 98.4 7.7E-07 1.7E-11 89.8 8.7 73 5-82 591-663 (1153)
24 KOG4237 Extracellular matrix p 98.4 5E-08 1.1E-12 84.7 -0.0 129 5-162 69-206 (498)
25 PRK15370 E3 ubiquitin-protein 98.4 7.8E-07 1.7E-11 85.4 7.8 55 4-65 221-275 (754)
26 PRK15370 E3 ubiquitin-protein 98.4 1.1E-06 2.3E-11 84.4 7.6 69 4-82 200-268 (754)
27 PF12799 LRR_4: Leucine Rich r 98.3 5.4E-07 1.2E-11 54.6 3.5 36 29-65 2-37 (44)
28 COG4886 Leucine-rich repeat (L 98.3 5.3E-07 1.2E-11 80.6 4.9 39 119-157 248-290 (394)
29 PRK15387 E3 ubiquitin-protein 98.2 1.2E-06 2.5E-11 84.1 5.1 62 3-70 302-379 (788)
30 PF12799 LRR_4: Leucine Rich r 98.2 8.6E-07 1.9E-11 53.7 2.6 38 3-42 1-38 (44)
31 cd00116 LRR_RI Leucine-rich re 98.2 5.5E-07 1.2E-11 77.8 2.1 61 4-65 52-121 (319)
32 cd00116 LRR_RI Leucine-rich re 98.2 5.7E-07 1.2E-11 77.7 1.3 80 2-82 80-171 (319)
33 KOG4579 Leucine-rich repeat (L 98.1 9E-07 1.9E-11 66.6 0.8 77 3-82 53-129 (177)
34 KOG4658 Apoptotic ATPase [Sign 98.0 5.1E-06 1.1E-10 81.1 3.8 79 2-82 544-624 (889)
35 PRK15387 E3 ubiquitin-protein 98.0 5E-06 1.1E-10 79.8 3.2 74 3-86 382-457 (788)
36 KOG4658 Apoptotic ATPase [Sign 97.9 4.8E-06 1E-10 81.3 2.8 79 2-82 570-648 (889)
37 COG4886 Leucine-rich repeat (L 97.9 6.4E-06 1.4E-10 73.6 3.1 75 4-82 141-215 (394)
38 KOG0532 Leucine-rich repeat (L 97.8 3.2E-06 7E-11 76.8 -1.7 78 4-86 167-245 (722)
39 KOG1859 Leucine-rich repeat pr 97.7 6.2E-07 1.4E-11 83.4 -6.8 60 5-69 166-225 (1096)
40 KOG4579 Leucine-rich repeat (L 97.7 3.1E-06 6.7E-11 63.8 -1.9 101 4-135 28-132 (177)
41 KOG1259 Nischarin, modulator o 97.6 1.2E-05 2.5E-10 68.2 -0.0 74 3-82 307-380 (490)
42 KOG3207 Beta-tubulin folding c 97.4 5.7E-05 1.2E-09 66.8 0.7 81 2-82 145-228 (505)
43 KOG1859 Leucine-rich repeat pr 97.3 3.8E-05 8.3E-10 71.9 -1.2 77 2-82 208-285 (1096)
44 KOG1644 U2-associated snRNP A' 97.2 0.00043 9.4E-09 55.5 4.1 76 4-82 43-119 (233)
45 KOG0531 Protein phosphatase 1, 97.2 0.00014 3E-09 65.7 1.3 75 2-82 94-168 (414)
46 KOG3207 Beta-tubulin folding c 97.2 0.00017 3.6E-09 63.9 1.5 85 2-86 171-258 (505)
47 KOG3665 ZYG-1-like serine/thre 97.0 0.00028 6.1E-09 67.5 1.9 78 3-82 122-201 (699)
48 KOG2739 Leucine-rich acidic nu 97.0 0.00061 1.3E-08 56.6 3.0 78 2-82 64-149 (260)
49 PF00560 LRR_1: Leucine Rich R 96.9 0.00042 9E-09 35.2 0.9 19 54-73 2-20 (22)
50 PF00560 LRR_1: Leucine Rich R 96.8 0.00051 1.1E-08 34.9 1.0 20 30-50 2-21 (22)
51 KOG0531 Protein phosphatase 1, 96.8 0.0005 1.1E-08 62.1 1.4 75 2-82 117-192 (414)
52 KOG1644 U2-associated snRNP A' 96.3 0.0048 1E-07 49.6 3.6 80 2-82 63-146 (233)
53 KOG2123 Uncharacterized conser 95.8 0.0011 2.4E-08 55.8 -1.8 78 2-82 40-123 (388)
54 KOG2739 Leucine-rich acidic nu 95.7 0.0043 9.3E-08 51.6 1.2 75 3-82 43-122 (260)
55 KOG2982 Uncharacterized conser 95.6 0.0054 1.2E-07 52.3 1.3 80 2-82 70-152 (418)
56 KOG3665 ZYG-1-like serine/thre 95.5 0.0061 1.3E-07 58.5 1.5 79 2-82 147-226 (699)
57 PF13504 LRR_7: Leucine rich r 94.8 0.022 4.7E-07 26.8 1.5 13 53-65 2-14 (17)
58 PRK15386 type III secretion pr 94.7 0.059 1.3E-06 48.4 5.3 65 2-75 51-117 (426)
59 smart00369 LRR_TYP Leucine-ric 94.7 0.034 7.4E-07 29.1 2.3 21 2-23 1-21 (26)
60 smart00370 LRR Leucine-rich re 94.7 0.034 7.4E-07 29.1 2.3 21 2-23 1-21 (26)
61 PF13306 LRR_5: Leucine rich r 94.5 0.071 1.5E-06 39.3 4.6 77 2-82 11-87 (129)
62 KOG1909 Ran GTPase-activating 94.3 0.031 6.7E-07 48.6 2.5 16 120-135 207-222 (382)
63 KOG0473 Leucine-rich repeat pr 93.9 0.0021 4.5E-08 52.9 -5.1 76 3-82 42-117 (326)
64 KOG2120 SCF ubiquitin ligase, 93.8 0.0027 6E-08 54.0 -4.7 78 4-82 186-266 (419)
65 KOG2982 Uncharacterized conser 92.8 0.07 1.5E-06 45.7 2.1 63 1-64 95-158 (418)
66 PF13306 LRR_5: Leucine rich r 92.8 0.14 2.9E-06 37.8 3.5 76 2-82 34-109 (129)
67 PRK15386 type III secretion pr 92.6 0.28 6.1E-06 44.1 5.7 60 3-73 72-135 (426)
68 KOG1909 Ran GTPase-activating 92.3 0.072 1.6E-06 46.3 1.6 80 2-82 184-276 (382)
69 smart00370 LRR Leucine-rich re 91.9 0.14 3.1E-06 26.6 1.9 14 52-65 2-15 (26)
70 smart00369 LRR_TYP Leucine-ric 91.9 0.14 3.1E-06 26.6 1.9 14 52-65 2-15 (26)
71 PF13516 LRR_6: Leucine Rich r 90.7 0.06 1.3E-06 27.6 -0.3 14 28-41 2-15 (24)
72 KOG2120 SCF ubiquitin ligase, 89.2 0.24 5.2E-06 42.6 1.9 55 26-82 311-369 (419)
73 KOG0473 Leucine-rich repeat pr 87.9 0.024 5.3E-07 46.8 -4.6 62 18-82 32-94 (326)
74 KOG2123 Uncharacterized conser 87.9 0.055 1.2E-06 45.9 -2.6 74 4-82 20-94 (388)
75 COG5238 RNA1 Ran GTPase-activa 87.4 0.42 9E-06 40.6 2.2 80 2-82 29-126 (388)
76 smart00365 LRR_SD22 Leucine-ri 87.0 0.53 1.2E-05 24.8 1.7 14 3-16 2-15 (26)
77 smart00364 LRR_BAC Leucine-ric 85.9 0.53 1.2E-05 24.7 1.3 17 4-21 3-19 (26)
78 COG5238 RNA1 Ran GTPase-activa 85.8 1.2 2.5E-05 38.0 4.1 39 26-64 90-132 (388)
79 smart00368 LRR_RI Leucine rich 83.4 0.91 2E-05 24.2 1.6 14 3-16 2-15 (28)
80 PF04478 Mid2: Mid2 like cell 83.4 1 2.2E-05 34.5 2.5 21 196-216 50-70 (154)
81 PF08693 SKG6: Transmembrane a 82.3 2.3 4.9E-05 24.9 3.0 25 196-220 13-37 (40)
82 PF01102 Glycophorin_A: Glycop 82.0 0.45 9.7E-06 35.3 0.1 26 195-220 64-89 (122)
83 PTZ00382 Variant-specific surf 76.6 1.6 3.5E-05 31.0 1.5 23 195-217 66-88 (96)
84 PF15102 TMEM154: TMEM154 prot 74.0 2.3 4.9E-05 32.5 1.8 14 210-223 74-87 (146)
85 PF07204 Orthoreo_P10: Orthore 68.5 4.4 9.5E-05 28.3 2.1 28 195-222 42-69 (98)
86 PF12191 stn_TNFRSF12A: Tumour 64.2 4 8.7E-05 30.2 1.3 33 195-227 79-111 (129)
87 PF12273 RCR: Chitin synthesis 60.8 5.5 0.00012 29.8 1.6 25 198-222 2-26 (130)
88 PF08374 Protocadherin: Protoc 60.2 11 0.00025 30.6 3.3 19 195-213 38-56 (221)
89 TIGR00864 PCC polycystin catio 58.1 7.5 0.00016 42.9 2.6 32 9-41 1-32 (2740)
90 PF05808 Podoplanin: Podoplani 57.3 3.5 7.5E-05 32.0 0.0 31 195-225 129-160 (162)
91 PF00558 Vpu: Vpu protein; In 54.3 8.3 0.00018 26.3 1.4 27 212-238 22-48 (81)
92 TIGR00864 PCC polycystin catio 54.2 8 0.00017 42.7 2.0 32 34-65 1-32 (2740)
93 KOG3763 mRNA export factor TAP 52.7 11 0.00024 35.2 2.4 78 2-82 217-307 (585)
94 PF14575 EphA2_TM: Ephrin type 51.8 6.5 0.00014 26.4 0.6 18 201-218 7-24 (75)
95 PF02439 Adeno_E3_CR2: Adenovi 51.2 8.8 0.00019 22.1 1.0 10 200-209 8-17 (38)
96 PRK00523 hypothetical protein; 48.3 9.5 0.00021 25.3 1.0 21 207-227 15-35 (72)
97 KOG1947 Leucine rich repeat pr 46.4 8.5 0.00018 34.8 0.7 13 50-62 293-305 (482)
98 PF01034 Syndecan: Syndecan do 45.2 6.4 0.00014 25.5 -0.2 12 198-209 12-23 (64)
99 PF14610 DUF4448: Protein of u 44.4 19 0.00041 28.7 2.4 24 196-219 160-183 (189)
100 PF15179 Myc_target_1: Myc tar 44.1 8 0.00017 30.6 0.1 24 195-218 24-47 (197)
101 PF12606 RELT: Tumour necrosis 43.0 12 0.00026 23.0 0.8 25 210-234 14-38 (50)
102 PRK01844 hypothetical protein; 41.4 15 0.00032 24.5 1.0 19 210-228 17-35 (72)
103 PF06697 DUF1191: Protein of u 39.0 1.2E+02 0.0026 25.9 6.4 12 195-206 213-225 (278)
104 PF04971 Lysis_S: Lysis protei 38.5 22 0.00047 23.4 1.5 25 195-219 33-57 (68)
105 smart00367 LRR_CC Leucine-rich 38.3 21 0.00046 18.2 1.2 12 2-13 1-12 (26)
106 PF11770 GAPT: GRB2-binding ad 38.1 13 0.00028 28.4 0.4 23 201-223 13-35 (158)
107 PF03302 VSP: Giardia variant- 36.7 24 0.00051 31.9 2.0 24 195-218 367-390 (397)
108 PRK14762 membrane protein; Pro 36.6 20 0.00043 18.5 0.8 19 197-215 5-23 (27)
109 PF04478 Mid2: Mid2 like cell 34.0 23 0.00049 27.3 1.2 28 195-223 53-80 (154)
110 KOG3864 Uncharacterized conser 32.4 16 0.00034 29.8 0.1 77 5-82 103-182 (221)
111 PF14986 DUF4514: Domain of un 31.6 50 0.0011 20.5 2.2 15 195-209 22-36 (61)
112 PF03229 Alpha_GJ: Alphavirus 29.7 1.2E+02 0.0027 22.2 4.3 18 207-224 96-113 (126)
113 PF12877 DUF3827: Domain of un 28.4 30 0.00066 32.9 1.3 19 195-213 270-288 (684)
114 PF02480 Herpes_gE: Alphaherpe 27.4 20 0.00044 32.7 0.0 8 220-227 379-386 (439)
115 PF08114 PMP1_2: ATPase proteo 26.6 75 0.0016 18.6 2.2 6 216-221 28-33 (43)
116 PF15345 TMEM51: Transmembrane 26.5 2E+02 0.0043 23.9 5.5 8 196-203 61-68 (233)
117 TIGR03141 cytochro_ccmD heme e 26.2 1.2E+02 0.0025 18.0 3.2 9 221-229 29-37 (45)
118 PF04995 CcmD: Heme exporter p 25.3 1.2E+02 0.0026 18.0 3.1 10 221-230 28-37 (46)
119 PF10954 DUF2755: Protein of u 24.7 63 0.0014 22.4 2.0 11 214-224 89-99 (100)
120 PRK10132 hypothetical protein; 23.6 78 0.0017 22.9 2.4 10 208-217 96-105 (108)
121 PF15069 FAM163: FAM163 family 23.3 99 0.0022 23.5 3.0 23 196-219 7-29 (143)
122 PF05337 CSF-1: Macrophage col 22.8 28 0.00061 29.5 0.0 22 202-223 233-254 (285)
123 PF13268 DUF4059: Protein of u 22.8 1.1E+02 0.0024 20.3 2.8 30 212-241 23-52 (72)
124 PF11980 DUF3481: Domain of un 21.3 54 0.0012 22.5 1.1 9 213-221 35-43 (87)
125 PF05568 ASFV_J13L: African sw 21.1 1.1E+02 0.0024 23.4 2.8 8 217-224 52-59 (189)
126 PF12768 Rax2: Cortical protei 20.2 89 0.0019 26.8 2.5 10 124-133 138-147 (281)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=8.8e-20 Score=179.79 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=109.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|+|++|++.|.+|..+. .++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|..+.++++|+.|
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred CCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 46677777777777777776553 5777777777777777777777777777777777777777777777777777777
Q ss_pred c--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCCCCCCCCC
Q 048290 82 R--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLGTQLQSFN 147 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~~~l~~~~ 147 (253)
+ .|.+. +.+|.. ..+.+.+|. ++|.+|..+..++.|+.+|+++ .+|..+++.++.
T Consensus 529 ~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~ 597 (968)
T PLN00113 529 DLSHNQLS----GQIPASFSEMPVLSQLDLSQNQ-------LSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAIN 597 (968)
T ss_pred ECCCCccc----ccCChhHhCcccCCEEECCCCc-------ccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccC
Confidence 7 33332 223322 223344444 6899999999999999999998 799999999999
Q ss_pred ccccCCcCCCCCcc
Q 048290 148 ASVYAGNLELCGLP 161 (253)
Q Consensus 148 ~~~~~gN~~LCg~~ 161 (253)
..++.||+++||.+
T Consensus 598 ~~~~~~n~~lc~~~ 611 (968)
T PLN00113 598 ASAVAGNIDLCGGD 611 (968)
T ss_pred hhhhcCCccccCCc
Confidence 99999999999865
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.76 E-value=5e-18 Score=159.48 Aligned_cols=118 Identities=26% Similarity=0.401 Sum_probs=98.5
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-C
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-C 83 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~ 83 (253)
++.|+|++|.++|.+|..+. .+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+ +
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 77899999999999999998 899999999999999999999999999999999999999999999999999999998 2
Q ss_pred CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCCCCCCCCCCCCCCccccCCcCCCCCccCC
Q 048290 84 SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLA 163 (253)
Q Consensus 84 n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~~iP~~~~l~~~~~~~~~gN~~LCg~~~~ 163 (253)
++. ++|.+|..++.+. .......+.+|+++||.|..
T Consensus 499 ~N~---------------------------l~g~iP~~l~~~~-----------------~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 499 GNS---------------------------LSGRVPAALGGRL-----------------LHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred CCc---------------------------ccccCChHHhhcc-----------------ccCceEEecCCccccCCCCC
Confidence 222 3777777664321 11223458899999998766
Q ss_pred CCCC
Q 048290 164 NKCP 167 (253)
Q Consensus 164 ~~C~ 167 (253)
..|.
T Consensus 535 ~~C~ 538 (623)
T PLN03150 535 RACG 538 (623)
T ss_pred CCCc
Confidence 6774
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=1.5e-14 Score=142.86 Aligned_cols=148 Identities=24% Similarity=0.310 Sum_probs=89.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCC-----------------------CCCCEEe
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-----------------------GFIQVLD 58 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l-----------------------~~L~~Ld 58 (253)
+++|+.|+|++|++++.+|..+. .++.|+.|+|++|.++|.+|..+..+ ++|+.||
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ 481 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence 44555566666666555555555 55555555555555555554444433 4556666
Q ss_pred ccCCccCCCcChhhhccccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeeccccccccccccee
Q 048290 59 LSLNIISGKIPKCFNNFSAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVR 129 (253)
Q Consensus 59 Ls~N~l~g~ip~~l~~l~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~ 129 (253)
|++|++++.+|..+.++++|+.|+ .|.+ .+.+|.. ..+.+.+|. ++|.+|..+..++.|+
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~p~~~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKL----SGEIPDELSSCKKLVSLDLSHNQ-------LSGQIPASFSEMPVLS 550 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcc----eeeCChHHcCccCCCEEECCCCc-------ccccCChhHhCcccCC
Confidence 666666666666666777777666 3333 2234433 223344444 6888999999999999
Q ss_pred eeccCC-----CCCCC-CCCCCCCccccCCcCCCCCcc
Q 048290 130 CLDLSR-----KIPLG-TQLQSFNASVYAGNLELCGLP 161 (253)
Q Consensus 130 ~LdLS~-----~iP~~-~~l~~~~~~~~~gN~~LCg~~ 161 (253)
.|||++ .+|.. ..+..+....+.+|+..+..|
T Consensus 551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999987 56754 345566666778887665333
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=3.9e-12 Score=119.86 Aligned_cols=74 Identities=34% Similarity=0.573 Sum_probs=70.2
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNF 75 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 75 (253)
++++|+.|+|++|+++|.+|..++ .+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 368899999999999999999998 89999999999999999999999999999999999999999999988764
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-13 Score=106.34 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=106.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
++.++.|-||+|+++ .+|+.+. .+.+|++|++.+|++. .+|.+++.+++|+.|+++-|++. ..|..|++++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 456778999999999 6888998 8999999999999998 78999999999999999999998 899999999999999
Q ss_pred c--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCC
Q 048290 82 R--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFN 147 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~ 147 (253)
+ .|++.. ..+|.. ..+++.+|- -..+|..++.+++|+.|.+.. .+|.. +.+..+.
T Consensus 108 dltynnl~e---~~lpgnff~m~tlralyl~dnd--------fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 108 DLTYNNLNE---NSLPGNFFYMTTLRALYLGDND--------FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred hcccccccc---ccCCcchhHHHHHHHHHhcCCC--------cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 9 565532 223332 122344443 455788888888888887765 55654 4455555
Q ss_pred ccccCCcCC
Q 048290 148 ASVYAGNLE 156 (253)
Q Consensus 148 ~~~~~gN~~ 156 (253)
.....||..
T Consensus 177 elhiqgnrl 185 (264)
T KOG0617|consen 177 ELHIQGNRL 185 (264)
T ss_pred HHhccccee
Confidence 555667743
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.13 E-value=6.3e-12 Score=113.24 Aligned_cols=80 Identities=21% Similarity=0.150 Sum_probs=53.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
|.++++|+|+.|+++..--.|+. +|+.|+.|+||+|.+...-+..+..+++|+.||||+|+++.--|..|..+.+|+.|
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 45667777777777655556666 67777777777777776666667777777777777777775555666666655555
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 347 n 347 (873)
T KOG4194|consen 347 N 347 (873)
T ss_pred c
Confidence 5
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=8.7e-11 Score=76.81 Aligned_cols=61 Identities=31% Similarity=0.355 Sum_probs=53.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCcc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l 64 (253)
++|+.|++++|+++...+..+. ++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999954445666 899999999999999977778899999999999999975
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=6.3e-11 Score=106.90 Aligned_cols=155 Identities=20% Similarity=0.080 Sum_probs=113.5
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+|++|+.||||+|.|...-++.+. -+++|++|+|++|+++..-+..|..|..|+.|.|++|+++..-...|..+++|+.
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred ccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 478999999999999987787777 7999999999999999888889999999999999999999777789999999999
Q ss_pred cc--CCCCCcc------cccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC-CCCCC--CCCCC--CC
Q 048290 81 ER--CSNPTIG------FAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-KIPLG--TQLQS--FN 147 (253)
Q Consensus 81 L~--~n~~~~~------~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-~iP~~--~~l~~--~~ 147 (253)
|+ +|.+... .+..+|.-..+.+.+|. ++.+.-..|..+..|++|||.+ .|-.- ..|.. +.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-------lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk 442 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-------LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK 442 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCce-------eeecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence 99 4554210 01112222344555555 4555666899999999999987 22111 12322 22
Q ss_pred ccccCCcCCCCCccCC
Q 048290 148 ASVYAGNLELCGLPLA 163 (253)
Q Consensus 148 ~~~~~gN~~LCg~~~~ 163 (253)
..-+..-..||.+++.
T Consensus 443 ~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 443 ELVMNSSSFLCDCQLK 458 (873)
T ss_pred hhhhcccceEEeccHH
Confidence 3335555678876544
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.03 E-value=1.2e-11 Score=96.09 Aligned_cols=118 Identities=21% Similarity=0.234 Sum_probs=95.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC-CCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS-GKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~ 80 (253)
+.+|+.|++++|++. .+|..+. ++++|+.|+++-|++. ..|..|+.++.|+.|||.+|+++ ..+|..|..++.|+.
T Consensus 55 l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred hhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 678999999999998 7999998 8999999999999997 78999999999999999999997 467988999999998
Q ss_pred cc--CCCCCcccccccccC-CC---cc---cccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER--CSNPTIGFAKLIFVP-AG---TG---YYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~--~n~~~~~~~~~ip~~-~~---l~---~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ +|.+. .+|.. +. ++ +.+|- --..|..++.++.|+.|.+.+
T Consensus 132 lyl~dndfe-----~lp~dvg~lt~lqil~lrdnd--------ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 132 LYLGDNDFE-----ILPPDVGKLTNLQILSLRDND--------LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred HHhcCCCcc-----cCChhhhhhcceeEEeeccCc--------hhhCcHHHHHHHHHHHHhccc
Confidence 88 55552 24444 22 21 22221 234788999999999999887
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=6.7e-11 Score=107.68 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=115.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+.+|..+|||.|.+. .+|..+. ++.+|+.|+||+|+++ .+.-..+.+.+|..|+||.|+++ .+|+++..++.|+.|
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 567888999999998 7899998 8999999999999998 56666778889999999999998 999999999999998
Q ss_pred c--CCCCCcccccccccC-CCcc------cccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCC
Q 048290 82 R--CSNPTIGFAKLIFVP-AGTG------YYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFN 147 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~-~~l~------~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~ 147 (253)
. +|.+. ...||.. +.+. ..+|. -...|+.+..+..|+.|.|++ .+|++ -.+..+.
T Consensus 297 y~n~NkL~---FeGiPSGIGKL~~Levf~aanN~--------LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 297 YANNNKLT---FEGIPSGIGKLIQLEVFHAANNK--------LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK 365 (1255)
T ss_pred HhccCccc---ccCCccchhhhhhhHHHHhhccc--------cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence 8 44442 3346665 3321 23333 566889999999999999998 66776 3456667
Q ss_pred ccccCCcCCCCCccCC
Q 048290 148 ASVYAGNLELCGLPLA 163 (253)
Q Consensus 148 ~~~~~gN~~LCg~~~~ 163 (253)
...+..||.|.-+|.+
T Consensus 366 vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPKP 381 (1255)
T ss_pred eeeccCCcCccCCCCc
Confidence 7778889988876654
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.00 E-value=9e-11 Score=106.83 Aligned_cols=128 Identities=23% Similarity=0.195 Sum_probs=85.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+..|+.||||+|++. ..|..+- ..+++-+|+||+|++..+.-+-|.+|+.|-+||||+|++. .+|..+..+..|++|
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 567888999999998 7888887 7888999999999998443344778999999999999997 788888888888888
Q ss_pred c-CCCCCccc-ccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R-CSNPTIGF-AKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~-~n~~~~~~-~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
. ++|...-+ -..+|....+...+-. +.......+|..+..+.+|..+|||+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms---~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMS---NTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcc---cccchhhcCCCchhhhhhhhhccccc
Confidence 8 55432211 2234443222110000 00012234566666666677777766
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=2.2e-10 Score=108.03 Aligned_cols=125 Identities=24% Similarity=0.225 Sum_probs=93.1
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
.+.|+.|.+.+|+++...=+.+. +.++|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.++..|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 34678899999999987666666 7999999999999997444445889999999999999998 899999999999999
Q ss_pred c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC------CCCCCCCCCCCCccccCCc
Q 048290 82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR------KIPLGTQLQSFNASVYAGN 154 (253)
Q Consensus 82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~------~iP~~~~l~~~~~~~~~gN 154 (253)
. .+|. .-..| .+..++.|+.+|+|+ .+|..-...++....+.||
T Consensus 436 ~ahsN~----------------------------l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 436 RAHSNQ----------------------------LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhcCCc----------------------------eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 8 3332 11234 566777888888887 3333322244555557788
Q ss_pred CCC
Q 048290 155 LEL 157 (253)
Q Consensus 155 ~~L 157 (253)
+++
T Consensus 487 ~~l 489 (1081)
T KOG0618|consen 487 TRL 489 (1081)
T ss_pred ccc
Confidence 753
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.78 E-value=2.2e-09 Score=93.30 Aligned_cols=118 Identities=21% Similarity=0.267 Sum_probs=60.7
Q ss_pred ECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccccCCCCCc
Q 048290 9 DLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTI 88 (253)
Q Consensus 9 ~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~~n~~~~ 88 (253)
++++|.++ .+|..+. .+++|..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|.++-.+..++.+-
T Consensus 418 ~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll------ 487 (565)
T KOG0472|consen 418 VLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLL------ 487 (565)
T ss_pred HhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHH------
Confidence 34444443 4444444 4555555555555554 45555555555555555555554 4555444444444332
Q ss_pred ccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCccccCCcCC
Q 048290 89 GFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVYAGNLE 156 (253)
Q Consensus 89 ~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~~gN~~ 156 (253)
.+++. +....|+.+.++..|+.|||.+ .||.+ +.+.++......|||.
T Consensus 488 -------------as~nq-------i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 488 -------------ASNNQ-------IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred -------------hcccc-------ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 11122 2333334467777777777776 56655 4555555555667764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.73 E-value=3.5e-09 Score=92.07 Aligned_cols=103 Identities=27% Similarity=0.304 Sum_probs=86.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|..|+|++|-+. .+|.+++ .+..|+.|+++.|+|. .+|..+-.+..++.+-.++|++...-|+.+.+|.+|.+|
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~-~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMG-SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhcceeeecccchhh-hcchhhh-hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 578999999999998 7999999 8999999999999997 788877667777777777799986666669999999999
Q ss_pred c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ .|+- -..+|..++++++|++|++++
T Consensus 511 DL~nNd----------------------------lq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 511 DLQNND----------------------------LQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred ccCCCc----------------------------hhhCChhhccccceeEEEecC
Confidence 8 3332 345788999999999999988
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=7.4e-09 Score=67.55 Aligned_cols=55 Identities=31% Similarity=0.429 Sum_probs=50.8
Q ss_pred CCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 28 QNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 28 ~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|+.++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~ 55 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLD 55 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEe
Confidence 5799999999999977677899999999999999999977788999999999998
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.5e-08 Score=80.20 Aligned_cols=76 Identities=32% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhh-hccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF-NNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~ 80 (253)
+.+++.|+|++|.|+ .+. .++..+.+|+.|+|++|.++. + +.+..++.|+.|++++|+++ .++..+ ..+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 456899999999998 454 454347899999999999985 3 35788999999999999998 565445 47899999
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 93 L~ 94 (175)
T PF14580_consen 93 LY 94 (175)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=2.8e-09 Score=96.13 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+..|++|||+.|+++ .+|..+. .|+ |++|.+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l 194 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL 194 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence 567889999999998 7888887 455 899999999997 78999998899999999999998 889999999999998
Q ss_pred c--CCCCCcccccccccC-C-----CcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R--CSNPTIGFAKLIFVP-A-----GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~-~-----~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ .|++.. +|++ . .++++.|. ...+|-.|.+|+.|++|-|.+
T Consensus 195 ~vrRn~l~~-----lp~El~~LpLi~lDfScNk--------is~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 195 NVRRNHLED-----LPEELCSLPLIRLDFSCNK--------ISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHhhhhhhh-----CCHHHhCCceeeeecccCc--------eeecchhhhhhhhheeeeecc
Confidence 8 555532 4443 2 23344444 455777788888888887766
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.65 E-value=4e-09 Score=99.65 Aligned_cols=82 Identities=26% Similarity=0.401 Sum_probs=73.5
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+.++|++|+|++|++. .+|.....+++.|+.|+||+|+++ .+|..+..+..|+.|...+|++. ..| .+..+++|+.
T Consensus 381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 3578999999999998 788776668999999999999998 78999999999999999999998 778 8999999999
Q ss_pred cc--CCCC
Q 048290 81 ER--CSNP 86 (253)
Q Consensus 81 L~--~n~~ 86 (253)
+| .|++
T Consensus 457 lDlS~N~L 464 (1081)
T KOG0618|consen 457 LDLSCNNL 464 (1081)
T ss_pred Eecccchh
Confidence 99 5555
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=4.8e-08 Score=77.37 Aligned_cols=77 Identities=27% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccc-cCCCCCCEEeccCCccCCCcC-hhhhccccCc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQL-CHLGFIQVLDLSLNIISGKIP-KCFNNFSAMT 79 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~-~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~ 79 (253)
+.+|+.|||++|.++ .++ .+. .++.|++|++++|+++. +++.+ ..+++|+.|+|++|++...-- ..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~-~l~-~l~-~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KLE-GLP-GLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S---T-T-----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCc-ccc-Ccc-ChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 568999999999999 565 365 79999999999999985 54444 468999999999999974322 5677888888
Q ss_pred ccc
Q 048290 80 YER 82 (253)
Q Consensus 80 ~L~ 82 (253)
.|+
T Consensus 117 ~L~ 119 (175)
T PF14580_consen 117 VLS 119 (175)
T ss_dssp EEE
T ss_pred eee
Confidence 887
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.8e-08 Score=84.77 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
++.|+.||||+|.|+ .+..++. -+|.++.|++++|.+.. + ..+..+++|+.||||+|.++ .+..+-..+.+++.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 356889999999998 7888886 78999999999999973 3 44889999999999999998 555554555666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
.
T Consensus 358 ~ 358 (490)
T KOG1259|consen 358 K 358 (490)
T ss_pred e
Confidence 5
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.47 E-value=1.1e-07 Score=82.64 Aligned_cols=81 Identities=21% Similarity=0.131 Sum_probs=69.8
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|+.|+|++|++++.-+.+|. ++..++.|.|..|++...-...|.++..|+.|+|.+|+++-.-|..|..+.+|.+
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 367899999999999987788887 8999999999999998665667889999999999999999888888888888888
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
++
T Consensus 351 l~ 352 (498)
T KOG4237|consen 351 LN 352 (498)
T ss_pred ee
Confidence 77
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.46 E-value=8e-07 Score=89.71 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=58.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|+|+++..-+.+|. +. .+++|+.|+|++|..-..+|..++++++|+.|++++|..-+.+|..+ ++++|+.|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 57788888888765556774 55 68888888888877666788888888888888888865555777654 56666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 710 ~ 710 (1153)
T PLN03210 710 N 710 (1153)
T ss_pred e
Confidence 5
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.42 E-value=7.7e-07 Score=89.81 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=34.3
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
|+.|++.+|.+. .+|..+ ...+|+.|+|++|++. .+|..+..+++|+.|+|+++..-+.+|. +..+++|+.|+
T Consensus 591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 444444444443 344443 2445555555555554 3444445555555555554433334442 44445555544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.41 E-value=5e-08 Score=84.70 Aligned_cols=129 Identities=20% Similarity=0.135 Sum_probs=74.5
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccC-CccCCCcChhhhccccCcccc-
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSL-NIISGKIPKCFNNFSAMTYER- 82 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~- 82 (253)
.+.++|..|+|+...|..|. .+++|+.|||++|+|+-+-|.+|.++.+|..|-+-+ |+|+...-+.|+++.+|+.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45667777777733333344 677777777777777766677777777766554433 777633335677777776655
Q ss_pred -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290 83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL 155 (253)
Q Consensus 83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~ 155 (253)
.+. +.-...+.|..++++..|.+-. .|+.+ ..+........+-||
T Consensus 148 Nan~----------------------------i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANH----------------------------INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred Chhh----------------------------hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 111 1333445566666666655543 33432 122333444577788
Q ss_pred CCCCccC
Q 048290 156 ELCGLPL 162 (253)
Q Consensus 156 ~LCg~~~ 162 (253)
+.|.+-+
T Consensus 200 ~icdCnL 206 (498)
T KOG4237|consen 200 FICDCNL 206 (498)
T ss_pred ccccccc
Confidence 8875433
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.40 E-value=7.8e-07 Score=85.36 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=27.3
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 65 (253)
+|+.|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|+|++|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 5666666666666 4554433 24555555555554 3444332 24444444444444
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=1.1e-06 Score=84.39 Aligned_cols=69 Identities=30% Similarity=0.394 Sum_probs=41.5
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+|+.|+|++|+++ .+|..+. .+|+.|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 4666777777776 4665543 36777777777776 3555442 35667777777766 5565443 2455555
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=5.4e-07 Score=54.61 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=19.2
Q ss_pred CccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290 29 NLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65 (253)
Q Consensus 29 ~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 65 (253)
+|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34445555555656666555555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=5.3e-07 Score=80.59 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=26.4
Q ss_pred ccccccccceeeeccCC----CCCCCCCCCCCCccccCCcCCC
Q 048290 119 NEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAGNLEL 157 (253)
Q Consensus 119 p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~gN~~L 157 (253)
+..++.+..++.|++++ .++....+..+....+.+|...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cchhccccccceeccccccccccccccccCccCEEeccCcccc
Confidence 67777888899999988 4554445555666666666543
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.25 E-value=1.2e-06 Score=84.12 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=37.1
Q ss_pred CcceEEECCCCcCccCCCh---hHh-------------hcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC
Q 048290 3 SQLRVLDLGKNAFFGEIPT---WTG-------------ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG 66 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~---~~~-------------~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g 66 (253)
++|+.|+|++|++++ +|. .+. .-..+|+.|+|++|+|++ +|... .+|+.|++++|+++
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp---~~L~~L~Ls~N~L~- 375 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLT- 375 (788)
T ss_pred cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCC---cccceehhhccccc-
Confidence 677888888888875 332 111 001368888888888884 55432 34555666666665
Q ss_pred CcCh
Q 048290 67 KIPK 70 (253)
Q Consensus 67 ~ip~ 70 (253)
.+|.
T Consensus 376 ~LP~ 379 (788)
T PRK15387 376 SLPA 379 (788)
T ss_pred cCcc
Confidence 3553
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=8.6e-07 Score=53.71 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=32.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG 42 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g 42 (253)
++|++|++++|+|+ .+|+.+. +|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCCC
Confidence 57999999999999 6888888 89999999999999983
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.21 E-value=5.5e-07 Score=77.77 Aligned_cols=61 Identities=23% Similarity=0.013 Sum_probs=30.9
Q ss_pred cceEEECCCCcCcc------CCChhHhhcCCCccEEEccCCcCcccCcccccCCCC---CCEEeccCCccC
Q 048290 4 QLRVLDLGKNAFFG------EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGF---IQVLDLSLNIIS 65 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g------~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~---L~~LdLs~N~l~ 65 (253)
+|+.|+++++.+.+ .++..+. .+++|+.|++++|.+.+..+..+..+.. |+.|++++|+++
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 45555555555541 1223343 4555566666655555444444444433 555566555554
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.17 E-value=5.7e-07 Score=77.66 Aligned_cols=80 Identities=24% Similarity=0.156 Sum_probs=61.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCC---ccEEEccCCcCcc----cCcccccCC-CCCCEEeccCCccCCCc----C
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQN---LIVLSLKSNKFHG----NIPYQLCHL-GFIQVLDLSLNIISGKI----P 69 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~---L~~L~L~~N~l~g----~ip~~~~~l-~~L~~LdLs~N~l~g~i----p 69 (253)
+++|+.|++++|.+.+..+..+. .+.+ |+.|++++|++++ .+...+..+ ++|+.|++++|.+++.. +
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 56899999999999876777776 5666 9999999999873 334456667 89999999999998543 3
Q ss_pred hhhhccccCcccc
Q 048290 70 KCFNNFSAMTYER 82 (253)
Q Consensus 70 ~~l~~l~~L~~L~ 82 (253)
..+..+..|+.|+
T Consensus 159 ~~~~~~~~L~~L~ 171 (319)
T cd00116 159 KALRANRDLKELN 171 (319)
T ss_pred HHHHhCCCcCEEE
Confidence 4556667788888
No 33
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=9e-07 Score=66.60 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=62.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
..|+..+|++|.|. .+|+.+....+.+++|+|++|.++ .+|.++..|+.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 35667789999988 677777645668899999999997 78888999999999999999988 7777777788887777
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.98 E-value=5.1e-06 Score=81.09 Aligned_cols=79 Identities=32% Similarity=0.371 Sum_probs=58.7
Q ss_pred CCcceEEECCCCc--CccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCc
Q 048290 2 CSQLRVLDLGKNA--FFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMT 79 (253)
Q Consensus 2 l~~L~~L~Ls~N~--l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 79 (253)
+++|+.|-+..|. +. .++..+...++.|++|||++|.=-+.+|..++.|-+|++|+|++..++ .+|..++++..|.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 4567777777775 33 455554436888888888877666678888888888888888888887 7788888888888
Q ss_pred ccc
Q 048290 80 YER 82 (253)
Q Consensus 80 ~L~ 82 (253)
+|+
T Consensus 622 ~Ln 624 (889)
T KOG4658|consen 622 YLN 624 (889)
T ss_pred eec
Confidence 777
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.96 E-value=5e-06 Score=79.84 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=56.5
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
.+|+.|+|++|+|+ .+|.. .++|+.|++++|+|++ +|... .+|+.|+|++|+++ .+|..+.++++|+.++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred cccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 46788888888888 46643 3578889999999884 66543 46778889999988 7888888888888888
Q ss_pred --CCCC
Q 048290 83 --CSNP 86 (253)
Q Consensus 83 --~n~~ 86 (253)
.|.+
T Consensus 452 Ls~N~L 457 (788)
T PRK15387 452 LEGNPL 457 (788)
T ss_pred CCCCCC
Confidence 4444
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.94 E-value=4.8e-06 Score=81.26 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
++.|++|||++|.=-+.+|..++ +|.+|++|+|++..++ .+|..+.+|..|.+||+..+.-...+|.....+++|++|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 68899999999887779999999 8999999999999998 899999999999999999988766778888889999988
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
.
T Consensus 648 ~ 648 (889)
T KOG4658|consen 648 R 648 (889)
T ss_pred E
Confidence 7
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.92 E-value=6.4e-06 Score=73.65 Aligned_cols=75 Identities=33% Similarity=0.398 Sum_probs=59.9
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+|+.|++++|.+. .+|..+. .+++|+.|++++|+++ .+|...+.++.|+.|++++|+++ .+|........|..+.
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215 (394)
T ss_pred hcccccccccchh-hhhhhhh-ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence 7888999999988 6777777 7899999999999987 66776668888888999999888 7777655555566666
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.75 E-value=3.2e-06 Score=76.78 Aligned_cols=78 Identities=32% Similarity=0.502 Sum_probs=54.2
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER- 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~- 82 (253)
.|..||.+.|.+. .+|..++ .+.+|+.|.++.|++. .+|++++.| .|..||+|.|+++ .||.+|.+|+.|++|.
T Consensus 167 tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 167 TLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence 3445555555555 4555555 5666666666666665 456666644 4778999999998 9999999999999988
Q ss_pred CCCC
Q 048290 83 CSNP 86 (253)
Q Consensus 83 ~n~~ 86 (253)
.||.
T Consensus 242 enNP 245 (722)
T KOG0532|consen 242 ENNP 245 (722)
T ss_pred ccCC
Confidence 5554
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=6.2e-07 Score=83.43 Aligned_cols=60 Identities=28% Similarity=0.311 Sum_probs=38.3
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP 69 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip 69 (253)
|...+.++|.+. .....+. -++.|+.|+|++|+++.. ..+..|..|+.|||++|.+. .+|
T Consensus 166 L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp 225 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVP 225 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccc
Confidence 445566667766 4555555 566777777777777632 25666777777777777776 444
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=3.1e-06 Score=63.76 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=75.1
Q ss_pred cceEEECCCCcCccCCChhHhh--cCCCccEEEccCCcCcccCcccccC-CCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGE--SLQNLIVLSLKSNKFHGNIPYQLCH-LGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~--~l~~L~~L~L~~N~l~g~ip~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
.+..+||++..+- .+++.... ....|...+|++|.|. ..|+.|.. .+-++.|+|++|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4678999999885 67765541 3456667799999998 56666654 458899999999999 89999999999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
++ .+|. -...|..+..|.++..||.-+
T Consensus 105 lNl~~N~----------------------------l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 105 LNLRFNP----------------------------LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccccCc----------------------------cccchHHHHHHHhHHHhcCCC
Confidence 98 4333 122455556677888888755
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.63 E-value=1.2e-05 Score=68.20 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=42.6
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+.++.|++|+|.+. .+.. +. .+++|+.|||++|.++ .+..+-..+.+.+.|.|+.|.+. .+ ..++.+-+|..|+
T Consensus 307 Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLD 380 (490)
T ss_pred cceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecc
Confidence 56777888888877 3433 55 5778888888888776 33333344455555555555543 11 2344444444444
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=5.7e-05 Score=66.80 Aligned_cols=81 Identities=26% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccc-cCCCCCCEEeccCCccCCCc-ChhhhccccC
Q 048290 2 CSQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQL-CHLGFIQVLDLSLNIISGKI-PKCFNNFSAM 78 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~-~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L 78 (253)
|++++.||||.|-|+...|- .|...|++|+.|+|+.|++.-.+.... ..+++|+.|.|+.+.|+..- -.....+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 66777777777777643331 233367777777777777764443322 34566777777777776332 2344556667
Q ss_pred cccc
Q 048290 79 TYER 82 (253)
Q Consensus 79 ~~L~ 82 (253)
..|+
T Consensus 225 ~~L~ 228 (505)
T KOG3207|consen 225 EVLY 228 (505)
T ss_pred HHhh
Confidence 6666
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=3.8e-05 Score=71.93 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=40.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~ 80 (253)
|.+|++|||++|.++ .+|..-..++. |+.|.+++|.++.. ..+.+|.+|+.|||++|-+++.-. .-+..+.+|+.
T Consensus 208 l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred cccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 445555555555555 44432111222 55555555555432 235567777777777777664432 23455566666
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|.
T Consensus 284 L~ 285 (1096)
T KOG1859|consen 284 LW 285 (1096)
T ss_pred Hh
Confidence 65
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.00043 Score=55.52 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=48.9
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ 82 (253)
....+||++|.+. .++ .+. .++.|.+|.|.+|+++..-|.--.-+++|+.|.|.+|++...-. .-+..++.|+.|.
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcc-cCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4567888888876 444 243 67888888888888885444433445678888888888762111 2355566666655
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.19 E-value=0.00014 Score=65.71 Aligned_cols=75 Identities=32% Similarity=0.337 Sum_probs=52.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|++.+|+|.. +...+. .+++|++|+|++|.++... .+..++.|+.|++++|.++ .++ .+..+..|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhh-cccchh-hhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcc
Confidence 5678888888888874 443344 6888888888888887553 3456666888888888886 333 34556666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 168 ~ 168 (414)
T KOG0531|consen 168 D 168 (414)
T ss_pred c
Confidence 6
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00017 Score=63.94 Aligned_cols=85 Identities=21% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCccc-CcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGN-IPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|+.|+|+.|++.-.........+++|..|.|+.+.|+-. +-.....+++|..|+|..|...+.-......+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 688999999999987544443333577888888888888732 2223456778888888888643333444556667777
Q ss_pred cc--CCCC
Q 048290 81 ER--CSNP 86 (253)
Q Consensus 81 L~--~n~~ 86 (253)
|+ +|++
T Consensus 251 LdLs~N~l 258 (505)
T KOG3207|consen 251 LDLSNNNL 258 (505)
T ss_pred ccccCCcc
Confidence 77 4444
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.00028 Score=67.45 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=60.4
Q ss_pred CcceEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCccc-CcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 3 SQLRVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGN-IPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
.+|++||+++.... ...|..++.-||+|+.|.+++-.+... .-.-..++++|..||+|+.+++. + ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 47899999997654 234566776789999999999777532 23445789999999999999983 3 67888999988
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|.
T Consensus 200 L~ 201 (699)
T KOG3665|consen 200 LS 201 (699)
T ss_pred Hh
Confidence 86
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00061 Score=56.59 Aligned_cols=78 Identities=26% Similarity=0.294 Sum_probs=44.2
Q ss_pred CCcceEEECCCC--cCccCCChhHhhcCCCccEEEccCCcCcccCccc---ccCCCCCCEEeccCCccCCCcC---hhhh
Q 048290 2 CSQLRVLDLGKN--AFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQ---LCHLGFIQVLDLSLNIISGKIP---KCFN 73 (253)
Q Consensus 2 l~~L~~L~Ls~N--~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~---~~~l~~L~~LdLs~N~l~g~ip---~~l~ 73 (253)
|++|+.|++|.| ++++.++...- .+++|++|+|++|+++- +.. +..+.+|..||+.++.-++.-- ..|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 456667777777 55555555444 56777777777777652 333 3344555666666665543211 2344
Q ss_pred ccccCcccc
Q 048290 74 NFSAMTYER 82 (253)
Q Consensus 74 ~l~~L~~L~ 82 (253)
-+++|++|+
T Consensus 141 ll~~L~~LD 149 (260)
T KOG2739|consen 141 LLPSLKYLD 149 (260)
T ss_pred Hhhhhcccc
Confidence 556666665
No 49
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.89 E-value=0.00042 Score=35.21 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=9.0
Q ss_pred CCEEeccCCccCCCcChhhh
Q 048290 54 IQVLDLSLNIISGKIPKCFN 73 (253)
Q Consensus 54 L~~LdLs~N~l~g~ip~~l~ 73 (253)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555554 4444433
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.84 E-value=0.00051 Score=34.86 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=10.7
Q ss_pred ccEEEccCCcCcccCcccccC
Q 048290 30 LIVLSLKSNKFHGNIPYQLCH 50 (253)
Q Consensus 30 L~~L~L~~N~l~g~ip~~~~~ 50 (253)
|++|+|++|+|+ .+|++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 555555555555 45554443
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.81 E-value=0.0005 Score=62.07 Aligned_cols=75 Identities=25% Similarity=0.172 Sum_probs=59.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChh-hhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKC-FNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~ 80 (253)
|++|++|||++|+|+...+ +. .++.|+.|++++|.++.. ..+..+..|+.+++++|.+...-+ . ...+..++.
T Consensus 117 ~~~L~~L~ls~N~I~~i~~--l~-~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~ 190 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEG--LS-TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEE 190 (414)
T ss_pred hhcchheeccccccccccc--hh-hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHH
Confidence 6889999999999995444 44 688899999999999843 456679999999999999984443 2 466666766
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
+.
T Consensus 191 l~ 192 (414)
T KOG0531|consen 191 LD 192 (414)
T ss_pred Hh
Confidence 66
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.0048 Score=49.65 Aligned_cols=80 Identities=20% Similarity=0.090 Sum_probs=60.5
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCccCCCcC---hhhhcccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNIISGKIP---KCFNNFSA 77 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~ 77 (253)
+..|..|.|++|+|+. |.+.+..-+++|..|.|.+|++...- -.-+..++.|++|.+-+|..+..-- -.+..+++
T Consensus 63 l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 5789999999999995 55456546789999999999997321 1236678899999999998873321 24567788
Q ss_pred Ccccc
Q 048290 78 MTYER 82 (253)
Q Consensus 78 L~~L~ 82 (253)
|+.||
T Consensus 142 l~~LD 146 (233)
T KOG1644|consen 142 LRTLD 146 (233)
T ss_pred ceEee
Confidence 88887
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0011 Score=55.82 Aligned_cols=78 Identities=21% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccCCccCCCcCh-----hhhcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSLNIISGKIPK-----CFNNF 75 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~-----~l~~l 75 (253)
++.|++|.||-|+|+..-| +. .|++|+.|+|+.|.|...-- .-+.++++|+.|.|..|.-.|.-+. .+.-|
T Consensus 40 Mp~lEVLsLSvNkIssL~p--l~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP--LQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred cccceeEEeeccccccchh--HH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 6789999999999994433 44 79999999999999974321 2367899999999999999888763 46678
Q ss_pred ccCcccc
Q 048290 76 SAMTYER 82 (253)
Q Consensus 76 ~~L~~L~ 82 (253)
++|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 8888887
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.0043 Score=51.61 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=51.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCC--cCcccCcccccCCCCCCEEeccCCccCCCcChhh---hcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN--KFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF---NNFSA 77 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N--~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l---~~l~~ 77 (253)
..|+.|.+.+-.++. +- .+. .|++|+.|.++.| +.++.++.-...+++|++|+|++|++. ++..+ ..+.+
T Consensus 43 ~~le~ls~~n~gltt-~~-~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-LT-NFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceee-cc-cCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcc
Confidence 456667777766662 22 233 6889999999999 666666666667799999999999997 24433 44445
Q ss_pred Ccccc
Q 048290 78 MTYER 82 (253)
Q Consensus 78 L~~L~ 82 (253)
|..|+
T Consensus 118 L~~Ld 122 (260)
T KOG2739|consen 118 LKSLD 122 (260)
T ss_pred hhhhh
Confidence 55555
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.0054 Score=52.29 Aligned_cols=80 Identities=23% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCcceEEECCCCcCccC--CChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccC
Q 048290 2 CSQLRVLDLGKNAFFGE--IPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAM 78 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~--~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L 78 (253)
++.++.|||..|.|+.. +. .+..++|.|++|+|+.|.+...|-..-..+.+|+.|-|.+..+...-- ..+..++.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45677788888888742 22 233378888888888888876553322456677888777776654432 344556555
Q ss_pred cccc
Q 048290 79 TYER 82 (253)
Q Consensus 79 ~~L~ 82 (253)
+.|.
T Consensus 149 telH 152 (418)
T KOG2982|consen 149 TELH 152 (418)
T ss_pred hhhh
Confidence 5554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.51 E-value=0.0061 Score=58.50 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=56.1
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~ 80 (253)
|++|+.|.+++=.+...--..+..++++|..||+|+.+++-. ..++.|++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 678899999887775432122333789999999999888743 667888888888776655542 11235778888888
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
||
T Consensus 225 LD 226 (699)
T KOG3665|consen 225 LD 226 (699)
T ss_pred ee
Confidence 88
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.79 E-value=0.022 Score=26.85 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=5.1
Q ss_pred CCCEEeccCCccC
Q 048290 53 FIQVLDLSLNIIS 65 (253)
Q Consensus 53 ~L~~LdLs~N~l~ 65 (253)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.74 E-value=0.059 Score=48.42 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCC-ccCCCcChhhhcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLN-IISGKIPKCFNNF 75 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l 75 (253)
|.+++.|++++|.++ .+|. + ..+|+.|.+++ +.++ .+|..+ ..+|+.|++++| .+. .+|..+..|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccccceE
Confidence 578899999999998 6772 2 34799999987 5554 566655 258999999998 554 677654443
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.65 E-value=0.034 Score=29.10 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=12.6
Q ss_pred CCcceEEECCCCcCccCCChhH
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWT 23 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~ 23 (253)
+++|+.|+|++|+++ .+|...
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356666666666666 455544
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.65 E-value=0.034 Score=29.10 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=12.6
Q ss_pred CCcceEEECCCCcCccCCChhH
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWT 23 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~ 23 (253)
+++|+.|+|++|+++ .+|...
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356666666666666 455544
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.50 E-value=0.071 Score=39.29 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
|++|+.+.+.. .+. .++.....++.+|+.+.+.++ +...-...|.++.+|+.+.+.+ .+...-...|..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 34566666653 344 233322225556666666554 4433334455665666666644 3321222345555555554
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
.
T Consensus 87 ~ 87 (129)
T PF13306_consen 87 D 87 (129)
T ss_dssp E
T ss_pred c
Confidence 4
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.30 E-value=0.031 Score=48.55 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=11.7
Q ss_pred cccccccceeeeccCC
Q 048290 120 EYKSTLGLVRCLDLSR 135 (253)
Q Consensus 120 ~~~~~l~~L~~LdLS~ 135 (253)
..+..++.|+.|||..
T Consensus 207 eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRD 222 (382)
T ss_pred HHHHhCCcceeeeccc
Confidence 3456778888888865
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.92 E-value=0.0021 Score=52.89 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=56.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
...+.||++.|++- .+-..+. -++.|..|+++.|++. ..|.+++++..+..+++.+|+.+ ..|.+++..+.++.++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s-~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFS-ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHH-hhccchH-HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 34567888888776 4555565 5777888888888876 67888888888888888877776 7777888877777766
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.0027 Score=54.03 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=56.2
Q ss_pred cceEEECCCCcCccCC-ChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc-cCCC-cChhhhccccCcc
Q 048290 4 QLRVLDLGKNAFFGEI-PTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI-ISGK-IPKCFNNFSAMTY 80 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~-p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~-l~g~-ip~~l~~l~~L~~ 80 (253)
.|++||||+-.++..- -.-+. .+.+|+-|.|.++++...|-..+..-.+|..|||+..+ |+.. ..-.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs-~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILS-QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHH-HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5788999998887432 22333 68899999999999998888888888899999998742 2211 1124567777777
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 265 LN 266 (419)
T KOG2120|consen 265 LN 266 (419)
T ss_pred cC
Confidence 76
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=0.07 Score=45.70 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=48.3
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNII 64 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l 64 (253)
+++.|++|+|+.|.++..|-..-. .+.+|++|.|.+..+.-.- ...+..++.++.|.+|.|++
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 478899999999999876654323 5789999999988876433 33467788889999999954
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.77 E-value=0.14 Score=37.75 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.+++.++ +. .++.....++++|+.+.+.+ .+...-...|..+++|+.+++..| +...-...|.+. .|+.+
T Consensus 34 ~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 34 CTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp -TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred cccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 567899999886 66 45544443787999999976 444344556788999999999776 553344567776 77766
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
.
T Consensus 109 ~ 109 (129)
T PF13306_consen 109 N 109 (129)
T ss_dssp E
T ss_pred E
Confidence 5
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.56 E-value=0.28 Score=44.14 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=40.4
Q ss_pred CcceEEECCC-CcCccCCChhHhhcCCCccEEEccCC-cCcccCcccccCCCCCCEEeccCCccC--CCcChhhh
Q 048290 3 SQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSN-KFHGNIPYQLCHLGFIQVLDLSLNIIS--GKIPKCFN 73 (253)
Q Consensus 3 ~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~ip~~~~~l~~L~~LdLs~N~l~--g~ip~~l~ 73 (253)
.+|+.|++++ ++++ .+|..+. ++|+.|++++| .+. .+|. +|..|+++.|... +.+|..+.
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~LP---~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSIP---EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchhh---hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHh
Confidence 3689999987 5665 6786553 58999999988 554 5664 3666777766542 35565444
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.35 E-value=0.072 Score=46.34 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=55.1
Q ss_pred CCcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCCCcChhhh
Q 048290 2 CSQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISGKIPKCFN 73 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 73 (253)
++.|+.+.++.|.|... +-..+. .+++|++|||+.|.|+-. +...++.+++|+.|+++++.++..=...|.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 35678888888887521 223455 689999999999999743 244577888999999999988744332332
Q ss_pred -----ccccCcccc
Q 048290 74 -----NFSAMTYER 82 (253)
Q Consensus 74 -----~l~~L~~L~ 82 (253)
..++|+.+.
T Consensus 263 ~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 263 DALKESAPSLEVLE 276 (382)
T ss_pred HHHhccCCCCceec
Confidence 345677766
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.89 E-value=0.14 Score=26.64 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=8.6
Q ss_pred CCCCEEeccCCccC
Q 048290 52 GFIQVLDLSLNIIS 65 (253)
Q Consensus 52 ~~L~~LdLs~N~l~ 65 (253)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.89 E-value=0.14 Score=26.64 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=8.6
Q ss_pred CCCCEEeccCCccC
Q 048290 52 GFIQVLDLSLNIIS 65 (253)
Q Consensus 52 ~~L~~LdLs~N~l~ 65 (253)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.73 E-value=0.06 Score=27.56 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=5.7
Q ss_pred CCccEEEccCCcCc
Q 048290 28 QNLIVLSLKSNKFH 41 (253)
Q Consensus 28 ~~L~~L~L~~N~l~ 41 (253)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444555554444
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=0.24 Score=42.56 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=30.1
Q ss_pred cCCCccEEEccCC-cCcccCcccccCCCCCCEEeccCCccCCCcChh---hhccccCcccc
Q 048290 26 SLQNLIVLSLKSN-KFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKC---FNNFSAMTYER 82 (253)
Q Consensus 26 ~l~~L~~L~L~~N-~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~---l~~l~~L~~L~ 82 (253)
.+++|..|||++| .++...-.+|.++..|++|.|+.+. +.+|.. +...++|.+|+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEE
Confidence 5666667776643 3443333445666666666665443 355543 34445555555
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.95 E-value=0.024 Score=46.79 Aligned_cols=62 Identities=31% Similarity=0.328 Sum_probs=51.1
Q ss_pred CCC-hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 18 EIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 18 ~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
.+| ..+. .......||++.|++. .+-..|.-++.|..||++.|++. ..|..++.+.++..++
T Consensus 32 ~~~v~ei~-~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~ 94 (326)
T KOG0473|consen 32 EIPVREIA-SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAA 94 (326)
T ss_pred ccchhhhh-ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHH
Confidence 344 3455 6788899999999997 45677888999999999999998 8899999888888877
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=0.055 Score=45.90 Aligned_cols=74 Identities=22% Similarity=0.125 Sum_probs=56.0
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ 82 (253)
+.+.|+.=+..++. | .+...++.|++|.|+=|.++.. ..+..|++|+.|+|..|.|...-. ..+.++++|+.|-
T Consensus 20 ~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45567777777763 3 2444799999999999999865 347789999999999999873221 4677888888876
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.40 E-value=0.42 Score=40.63 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=44.4
Q ss_pred CCcceEEECCCCcCccCCChhHhh---cCCCccEEEccCCcCccc----Ccc-------cccCCCCCCEEeccCCccCCC
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGE---SLQNLIVLSLKSNKFHGN----IPY-------QLCHLGFIQVLDLSLNIISGK 67 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~---~l~~L~~L~L~~N~l~g~----ip~-------~~~~l~~L~~LdLs~N~l~g~ 67 (253)
+..++.+|||+|-|...-..|+.. +-.+|++.+++.-. +|. +|. .+-.|++|+..+||+|.|...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356788999999886443333331 33455555555422 222 222 345667777777777777655
Q ss_pred cChhhh----ccccCcccc
Q 048290 68 IPKCFN----NFSAMTYER 82 (253)
Q Consensus 68 ip~~l~----~l~~L~~L~ 82 (253)
.|..++ .-+.|..|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~ 126 (388)
T COG5238 108 FPEELGDLISSSTDLVHLK 126 (388)
T ss_pred cchHHHHHHhcCCCceeEE
Confidence 554433 334555555
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.97 E-value=0.53 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=7.3
Q ss_pred CcceEEECCCCcCc
Q 048290 3 SQLRVLDLGKNAFF 16 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~ 16 (253)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.88 E-value=0.53 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=10.5
Q ss_pred cceEEECCCCcCccCCCh
Q 048290 4 QLRVLDLGKNAFFGEIPT 21 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~ 21 (253)
+|+.|++++|+++ .+|.
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 4554
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.85 E-value=1.2 Score=38.01 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred cCCCccEEEccCCcCcccCccc----ccCCCCCCEEeccCCcc
Q 048290 26 SLQNLIVLSLKSNKFHGNIPYQ----LCHLGFIQVLDLSLNII 64 (253)
Q Consensus 26 ~l~~L~~L~L~~N~l~g~ip~~----~~~l~~L~~LdLs~N~l 64 (253)
.|++|+..+||.|.|....|+. +++-+.|.+|.|++|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3555566666666555444443 33445555566655554
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.42 E-value=0.91 Score=24.17 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=8.9
Q ss_pred CcceEEECCCCcCc
Q 048290 3 SQLRVLDLGKNAFF 16 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~ 16 (253)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666664
No 80
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=83.38 E-value=1 Score=34.52 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=9.4
Q ss_pred eeeeehhhHHHHHHHHHHHHh
Q 048290 196 FYLSSILGFFVGFWGVCGTLM 216 (253)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (253)
+++++++|+.+.+++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEEecccHHHHHHHHHhh
Confidence 455555554443333333333
No 81
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=82.28 E-value=2.3 Score=24.88 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=10.1
Q ss_pred eeeeehhhHHHHHHHHHHHHhccCc
Q 048290 196 FYLSSILGFFVGFWGVCGTLMLNRS 220 (253)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (253)
+.+++++.+++.++++.+++++++|
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEe
Confidence 3344444444433333344443333
No 82
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=82.02 E-value=0.45 Score=35.27 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=15.0
Q ss_pred eeeeeehhhHHHHHHHHHHHHhccCc
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLNRS 220 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (253)
..++++++|+++|+++++++++|+.+
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHH
Confidence 34556666777776666655554433
No 83
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=76.56 E-value=1.6 Score=30.95 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=11.3
Q ss_pred eeeeeehhhHHHHHHHHHHHHhc
Q 048290 195 GFYLSSILGFFVGFWGVCGTLML 217 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~ 217 (253)
..++++++|.++++.++++++++
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhh
Confidence 44555555555444444444443
No 84
>PF15102 TMEM154: TMEM154 protein family
Probab=73.99 E-value=2.3 Score=32.45 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=6.3
Q ss_pred HHHHHHhccCchhh
Q 048290 210 GVCGTLMLNRSWRY 223 (253)
Q Consensus 210 ~~~~~~~~~~~~r~ 223 (253)
++++++++.||||.
T Consensus 74 ~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 74 SVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHheeEEeeccc
Confidence 33333334555554
No 85
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=68.51 E-value=4.4 Score=28.31 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=16.8
Q ss_pred eeeeeehhhHHHHHHHHHHHHhccCchh
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLNRSWR 222 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r 222 (253)
|.+++.+.|+++.+++++.++.++.+|+
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 6677777777766665444444444554
No 86
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=64.19 E-value=4 Score=30.20 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=0.0
Q ss_pred eeeeeehhhHHHHHHHHHHHHhccCchhhHHHH
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFN 227 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 227 (253)
|.+.+.+.++++++.++.++++++|.+|++.|.
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp ---------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhccccCC
Confidence 333333334443344444556666666655443
No 87
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.75 E-value=5.5 Score=29.76 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=11.2
Q ss_pred eeehhhHHHHHHHHHHHHhccCchh
Q 048290 198 LSSILGFFVGFWGVCGTLMLNRSWR 222 (253)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~r 222 (253)
+++.+++|+++++++++++++.++|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444443333333
No 88
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=60.23 E-value=11 Score=30.62 Aligned_cols=19 Identities=5% Similarity=0.079 Sum_probs=9.9
Q ss_pred eeeeeehhhHHHHHHHHHH
Q 048290 195 GFYLSSILGFFVGFWGVCG 213 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ 213 (253)
.+++++++|++++++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred eeeeeeecchhhhHHHHHH
Confidence 4566666665554444333
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.13 E-value=7.5 Score=42.92 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=26.2
Q ss_pred ECCCCcCccCCChhHhhcCCCccEEEccCCcCc
Q 048290 9 DLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH 41 (253)
Q Consensus 9 ~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~ 41 (253)
||++|+|+ .+|......+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 68999999 566655558999999999999876
No 90
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=57.32 E-value=3.5 Score=31.96 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred eeeeeehhhHHHHHHHHHHHHh-ccCchhhHH
Q 048290 195 GFYLSSILGFFVGFWGVCGTLM-LNRSWRYGF 225 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~ 225 (253)
+.++++++|+++++.++.++++ +.|++.-+|
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp --------------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 5667777777776666555544 455555554
No 91
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=54.31 E-value=8.3 Score=26.33 Aligned_cols=27 Identities=4% Similarity=-0.085 Sum_probs=8.0
Q ss_pred HHHHhccCchhhHHHHHHHhhhhhhhH
Q 048290 212 CGTLMLNRSWRYGFFNFLTSMKDWVYV 238 (253)
Q Consensus 212 ~~~~~~~~~~r~~~~~~~~~~~~~~~~ 238 (253)
+..+++....+.+-.+.+|...+|+.+
T Consensus 22 vW~iv~ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 22 VWTIVYIEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp HHHHH------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 333444444444444666666666544
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.23 E-value=8 Score=42.73 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=28.5
Q ss_pred EccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290 34 SLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65 (253)
Q Consensus 34 ~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 65 (253)
||++|+|+..-+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999766777999999999999999885
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.71 E-value=11 Score=35.17 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCcceEEECCCCcCccCCC--hhHhhcCCCccEEEccCC--cCcccCcccccCC--CCCCEEeccCCccCCCcCh---hh
Q 048290 2 CSQLRVLDLGKNAFFGEIP--TWTGESLQNLIVLSLKSN--KFHGNIPYQLCHL--GFIQVLDLSLNIISGKIPK---CF 72 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p--~~~~~~l~~L~~L~L~~N--~l~g~ip~~~~~l--~~L~~LdLs~N~l~g~ip~---~l 72 (253)
...+..+.|++|++-. +. ..+....++|..|+|++| .+. -..++..+ ..|+.|-|.+|.+....-. .+
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 3567788999998863 22 223335789999999999 333 22333333 3467888999988654321 12
Q ss_pred h----ccccCcccc
Q 048290 73 N----NFSAMTYER 82 (253)
Q Consensus 73 ~----~l~~L~~L~ 82 (253)
. -++.|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2 456677776
No 94
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=51.79 E-value=6.5 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.085 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHHhcc
Q 048290 201 ILGFFVGFWGVCGTLMLN 218 (253)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (253)
++|+++.+.++++++++.
T Consensus 7 ~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhheeEEEEE
Confidence 334333333333333333
No 95
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=51.23 E-value=8.8 Score=22.08 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=4.0
Q ss_pred ehhhHHHHHH
Q 048290 200 SILGFFVGFW 209 (253)
Q Consensus 200 ~~~~~~~~~~ 209 (253)
+++|+++|+.
T Consensus 8 IIv~V~vg~~ 17 (38)
T PF02439_consen 8 IIVAVVVGMA 17 (38)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 96
>PRK00523 hypothetical protein; Provisional
Probab=48.31 E-value=9.5 Score=25.34 Aligned_cols=21 Identities=5% Similarity=-0.171 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccCchhhHHHH
Q 048290 207 GFWGVCGTLMLNRSWRYGFFN 227 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~r~~~~~ 227 (253)
.++.+++.+++.|++-.+|++
T Consensus 15 li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 15 LIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777777666
No 97
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=46.40 E-value=8.5 Score=34.76 Aligned_cols=13 Identities=31% Similarity=0.151 Sum_probs=6.5
Q ss_pred CCCCCCEEeccCC
Q 048290 50 HLGFIQVLDLSLN 62 (253)
Q Consensus 50 ~l~~L~~LdLs~N 62 (253)
.+++|+.|+|+.+
T Consensus 293 ~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 RCPSLRELDLSGC 305 (482)
T ss_pred hcCcccEEeeecC
Confidence 3444555555544
No 98
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=45.22 E-value=6.4 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=0.0
Q ss_pred eeehhhHHHHHH
Q 048290 198 LSSILGFFVGFW 209 (253)
Q Consensus 198 ~~~~~~~~~~~~ 209 (253)
.++++|.++|++
T Consensus 12 aavIaG~Vvgll 23 (64)
T PF01034_consen 12 AAVIAGGVVGLL 23 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 99
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=44.43 E-value=19 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=9.6
Q ss_pred eeeeehhhHHHHHHHHHHHHhccC
Q 048290 196 FYLSSILGFFVGFWGVCGTLMLNR 219 (253)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~ 219 (253)
+++++-+.+++.++++++.++..|
T Consensus 160 laI~lPvvv~~~~~~~~~~~~~~R 183 (189)
T PF14610_consen 160 LAIALPVVVVVLALIMYGFFFWNR 183 (189)
T ss_pred EEEEccHHHHHHHHHHHhhheeec
Confidence 444444444443333333333333
No 100
>PF15179 Myc_target_1: Myc target protein 1
Probab=44.12 E-value=8 Score=30.59 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=14.9
Q ss_pred eeeeeehhhHHHHHHHHHHHHhcc
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLN 218 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~ 218 (253)
.+.+++++|+++|.++.+.+.++.
T Consensus 24 aF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778777776655544443
No 101
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=43.00 E-value=12 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=14.7
Q ss_pred HHHHHHhccCchhhHHHHHHHhhhh
Q 048290 210 GVCGTLMLNRSWRYGFFNFLTSMKD 234 (253)
Q Consensus 210 ~~~~~~~~~~~~r~~~~~~~~~~~~ 234 (253)
++++++++....++.|.+.+|...+
T Consensus 14 ~lLg~~I~~~~K~ygYkht~d~~e~ 38 (50)
T PF12606_consen 14 GLLGLSICTTLKAYGYKHTVDPLED 38 (50)
T ss_pred HHHHHHHHHHhhccccccccCCCCC
Confidence 3444555555666677777776433
No 102
>PRK01844 hypothetical protein; Provisional
Probab=41.39 E-value=15 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=11.1
Q ss_pred HHHHHHhccCchhhHHHHH
Q 048290 210 GVCGTLMLNRSWRYGFFNF 228 (253)
Q Consensus 210 ~~~~~~~~~~~~r~~~~~~ 228 (253)
.+++.+++.|++-.+|++-
T Consensus 17 G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 17 GVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666676666554
No 103
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=39.01 E-value=1.2e+02 Score=25.92 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=5.2
Q ss_pred eeee-eehhhHHH
Q 048290 195 GFYL-SSILGFFV 206 (253)
Q Consensus 195 ~~~~-~~~~~~~~ 206 (253)
|.++ +++.|+++
T Consensus 213 W~iv~g~~~G~~~ 225 (278)
T PF06697_consen 213 WKIVVGVVGGVVL 225 (278)
T ss_pred EEEEEEehHHHHH
Confidence 5433 33455443
No 104
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=38.47 E-value=22 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=14.5
Q ss_pred eeeeeehhhHHHHHHHHHHHHhccC
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLNR 219 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (253)
|..++++.|++++++..+.=++|++
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~ 57 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKI 57 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhh
Confidence 6666766666666655444444443
No 105
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.27 E-value=21 Score=18.19 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=6.9
Q ss_pred CCcceEEECCCC
Q 048290 2 CSQLRVLDLGKN 13 (253)
Q Consensus 2 l~~L~~L~Ls~N 13 (253)
|++|+.|+|+++
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 355666666655
No 106
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=38.06 E-value=13 Score=28.44 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHhccCchhh
Q 048290 201 ILGFFVGFWGVCGTLMLNRSWRY 223 (253)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~r~ 223 (253)
++|+.+.++++++.+-+.+.|++
T Consensus 13 ~igi~Ll~lLl~cgiGcvwhwkh 35 (158)
T PF11770_consen 13 SIGISLLLLLLLCGIGCVWHWKH 35 (158)
T ss_pred HHHHHHHHHHHHHhcceEEEeec
Confidence 34444334444444444444443
No 107
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=36.72 E-value=24 Score=31.86 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=14.7
Q ss_pred eeeeeehhhHHHHHHHHHHHHhcc
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLN 218 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~ 218 (253)
..+++|+|++|+++..++++|.+|
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhh
Confidence 566666666666666666665543
No 108
>PRK14762 membrane protein; Provisional
Probab=36.63 E-value=20 Score=18.48 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=10.9
Q ss_pred eeeehhhHHHHHHHHHHHH
Q 048290 197 YLSSILGFFVGFWGVCGTL 215 (253)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~ 215 (253)
.+.+++.|++|+.++.+++
T Consensus 5 lw~i~iifligllvvtgvf 23 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666654
No 109
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.02 E-value=23 Score=27.31 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=18.3
Q ss_pred eeeeeehhhHHHHHHHHHHHHhccCchhh
Q 048290 195 GFYLSSILGFFVGFWGVCGTLMLNRSWRY 223 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 223 (253)
++++++++++++++++++ ++++.|+.|.
T Consensus 53 GvVVGVGg~ill~il~lv-f~~c~r~kkt 80 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALV-FIFCIRRKKT 80 (154)
T ss_pred EEEecccHHHHHHHHHhh-eeEEEecccC
Confidence 788888887777655544 5555555544
No 110
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=16 Score=29.82 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=42.8
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-ccccc-CCCCCCEEeccCC-ccCCCcChhhhccccCccc
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLC-HLGFIQVLDLSLN-IISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~-~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L 81 (253)
++.+|-++..|...=-..+. +++.++.|.+.+..--+.. -+.++ -.++|+.|+|++| +|+..--.++..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34556666555533223344 5666666666654422110 01122 3468899999976 5554444567777777776
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
.
T Consensus 182 ~ 182 (221)
T KOG3864|consen 182 H 182 (221)
T ss_pred H
Confidence 5
No 111
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=31.59 E-value=50 Score=20.51 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=7.8
Q ss_pred eeeeeehhhHHHHHH
Q 048290 195 GFYLSSILGFFVGFW 209 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (253)
..+++.++|+++...
T Consensus 22 Ya~IGtalGvaisAg 36 (61)
T PF14986_consen 22 YAIIGTALGVAISAG 36 (61)
T ss_pred eeeehhHHHHHHHHH
Confidence 455555555554433
No 112
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=29.74 E-value=1.2e+02 Score=22.16 Aligned_cols=18 Identities=17% Similarity=-0.108 Sum_probs=8.0
Q ss_pred HHHHHHHHHhccCchhhH
Q 048290 207 GFWGVCGTLMLNRSWRYG 224 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~r~~ 224 (253)
....+++...+.+|.+++
T Consensus 96 L~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 96 LTLAAMGAGALLRRCCRR 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444554444444333
No 113
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.41 E-value=30 Score=32.93 Aligned_cols=19 Identities=5% Similarity=-0.102 Sum_probs=11.1
Q ss_pred eeeeeehhhHHHHHHHHHH
Q 048290 195 GFYLSSILGFFVGFWGVCG 213 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ 213 (253)
|+++++++.++++++++++
T Consensus 270 WII~gVlvPv~vV~~Iiii 288 (684)
T PF12877_consen 270 WIIAGVLVPVLVVLLIIII 288 (684)
T ss_pred EEEehHhHHHHHHHHHHHH
Confidence 8888876655544444333
No 114
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.44 E-value=20 Score=32.74 Aligned_cols=8 Identities=13% Similarity=-0.143 Sum_probs=0.0
Q ss_pred chhhHHHH
Q 048290 220 SWRYGFFN 227 (253)
Q Consensus 220 ~~r~~~~~ 227 (253)
++|+++..
T Consensus 379 rrrR~~~~ 386 (439)
T PF02480_consen 379 RRRRRQRD 386 (439)
T ss_dssp --------
T ss_pred hhcccccc
Confidence 33333333
No 115
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.57 E-value=75 Score=18.59 Aligned_cols=6 Identities=33% Similarity=1.221 Sum_probs=2.8
Q ss_pred hccCch
Q 048290 216 MLNRSW 221 (253)
Q Consensus 216 ~~~~~~ 221 (253)
+..|+|
T Consensus 28 ~iYRKw 33 (43)
T PF08114_consen 28 FIYRKW 33 (43)
T ss_pred HHHHHH
Confidence 334555
No 116
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.48 E-value=2e+02 Score=23.89 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=3.0
Q ss_pred eeeeehhh
Q 048290 196 FYLSSILG 203 (253)
Q Consensus 196 ~~~~~~~~ 203 (253)
+++.+++|
T Consensus 61 AyVLVG~G 68 (233)
T PF15345_consen 61 AYVLVGSG 68 (233)
T ss_pred EEehhhHH
Confidence 33333333
No 117
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.21 E-value=1.2e+02 Score=18.01 Aligned_cols=9 Identities=22% Similarity=0.043 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 048290 221 WRYGFFNFL 229 (253)
Q Consensus 221 ~r~~~~~~~ 229 (253)
.+++..+.+
T Consensus 29 ~~r~~~~~l 37 (45)
T TIGR03141 29 DRRRLLREL 37 (45)
T ss_pred HHHHHHHHH
Confidence 333334433
No 118
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.26 E-value=1.2e+02 Score=18.00 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=3.8
Q ss_pred hhhHHHHHHH
Q 048290 221 WRYGFFNFLT 230 (253)
Q Consensus 221 ~r~~~~~~~~ 230 (253)
.+++..+.++
T Consensus 28 ~~r~~~~~l~ 37 (46)
T PF04995_consen 28 RRRRLRKELK 37 (46)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 119
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.66 E-value=63 Score=22.40 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=5.4
Q ss_pred HHhccCchhhH
Q 048290 214 TLMLNRSWRYG 224 (253)
Q Consensus 214 ~~~~~~~~r~~ 224 (253)
++-++.|||++
T Consensus 89 v~~l~lrwr~r 99 (100)
T PF10954_consen 89 VIALILRWRHR 99 (100)
T ss_pred HHHHHHHHHhc
Confidence 33344566653
No 120
>PRK10132 hypothetical protein; Provisional
Probab=23.56 E-value=78 Score=22.90 Aligned_cols=10 Identities=20% Similarity=0.085 Sum_probs=4.2
Q ss_pred HHHHHHHHhc
Q 048290 208 FWGVCGTLML 217 (253)
Q Consensus 208 ~~~~~~~~~~ 217 (253)
+.+++++++.
T Consensus 96 vG~llG~Ll~ 105 (108)
T PRK10132 96 VGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHh
Confidence 3334444433
No 121
>PF15069 FAM163: FAM163 family
Probab=23.26 E-value=99 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=9.5
Q ss_pred eeeeehhhHHHHHHHHHHHHhccC
Q 048290 196 FYLSSILGFFVGFWGVCGTLMLNR 219 (253)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~ 219 (253)
++.|.+++.++ ++.+++++.++|
T Consensus 7 VItGgILAtVI-LLcIIaVLCYCR 29 (143)
T PF15069_consen 7 VITGGILATVI-LLCIIAVLCYCR 29 (143)
T ss_pred EEechHHHHHH-HHHHHHHHHHHh
Confidence 34444444443 333444444433
No 122
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=22.79 E-value=28 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhccCchhh
Q 048290 202 LGFFVGFWGVCGTLMLNRSWRY 223 (253)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~r~ 223 (253)
.+++++++.|.+.++|++|||.
T Consensus 233 PSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 233 PSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ----------------------
T ss_pred cchhhhhhhccceeeecccccc
Confidence 3444445556666666555543
No 123
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=22.75 E-value=1.1e+02 Score=20.27 Aligned_cols=30 Identities=3% Similarity=-0.095 Sum_probs=16.2
Q ss_pred HHHHhccCchhhHHHHHHHhhhhhhhHHhH
Q 048290 212 CGTLMLNRSWRYGFFNFLTSMKDWVYVIWA 241 (253)
Q Consensus 212 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 241 (253)
++.++...|+.++.=+...+.+...|....
T Consensus 23 ~~~~wi~~Ra~~~~DKT~~eRQa~LyD~lm 52 (72)
T PF13268_consen 23 VSGIWILWRALRKKDKTAKERQAFLYDMLM 52 (72)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 333444445555555556666666666544
No 124
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=21.29 E-value=54 Score=22.48 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=3.7
Q ss_pred HHHhccCch
Q 048290 213 GTLMLNRSW 221 (253)
Q Consensus 213 ~~~~~~~~~ 221 (253)
++++++.|+
T Consensus 35 ~vvL~C~r~ 43 (87)
T PF11980_consen 35 GVVLYCHRF 43 (87)
T ss_pred HHHHhhhhh
Confidence 334444444
No 125
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=21.08 E-value=1.1e+02 Score=23.36 Aligned_cols=8 Identities=0% Similarity=-0.138 Sum_probs=3.4
Q ss_pred ccCchhhH
Q 048290 217 LNRSWRYG 224 (253)
Q Consensus 217 ~~~~~r~~ 224 (253)
+.+|.|++
T Consensus 52 cssRKkKa 59 (189)
T PF05568_consen 52 CSSRKKKA 59 (189)
T ss_pred HhhhhHHH
Confidence 33444444
No 126
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.23 E-value=89 Score=26.76 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=5.3
Q ss_pred cccceeeecc
Q 048290 124 TLGLVRCLDL 133 (253)
Q Consensus 124 ~l~~L~~LdL 133 (253)
.+..|+.+.+
T Consensus 138 ~I~~l~~~~l 147 (281)
T PF12768_consen 138 TIRGLQVLPL 147 (281)
T ss_pred EEEEEEEEec
Confidence 3445555555
Done!