Query 048290
Match_columns 253
No_of_seqs 284 out of 2127
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 14:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 2E-23 6.8E-28 199.6 12.1 108 52-171 632-753 (768)
2 1ogq_A PGIP-2, polygalacturona 99.8 8.3E-20 2.9E-24 156.9 8.7 155 2-166 124-312 (313)
3 3rgz_A Protein brassinosteroid 99.7 2.4E-16 8.2E-21 150.6 11.2 80 2-82 465-544 (768)
4 2v9t_B SLIT homolog 2 protein 99.7 2.6E-16 8.7E-21 128.5 9.6 132 3-161 32-169 (220)
5 3e6j_A Variable lymphocyte rec 99.6 8.8E-16 3E-20 126.0 11.6 130 3-161 40-176 (229)
6 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 126.6 11.7 149 3-159 35-194 (251)
7 1ogq_A PGIP-2, polygalacturona 99.6 2E-16 6.9E-21 135.7 6.5 121 2-135 75-206 (313)
8 2v70_A SLIT-2, SLIT homolog 2 99.6 7.9E-16 2.7E-20 125.6 9.6 130 4-161 33-170 (220)
9 3rfs_A Internalin B, repeat mo 99.6 1.9E-15 6.5E-20 127.0 12.0 150 2-161 62-222 (272)
10 2o6q_A Variable lymphocyte rec 99.6 2.5E-15 8.5E-20 126.1 12.5 151 2-161 60-222 (270)
11 1p9a_G Platelet glycoprotein I 99.6 1.9E-15 6.5E-20 128.4 11.5 148 2-160 54-211 (290)
12 1w8a_A SLIT protein; signaling 99.6 2.3E-15 7.9E-20 120.2 10.9 105 4-135 30-135 (192)
13 2o6s_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 119.3 11.8 130 3-160 28-164 (208)
14 1ozn_A Reticulon 4 receptor; N 99.6 2.3E-15 8E-20 127.0 9.8 152 2-161 55-242 (285)
15 2v70_A SLIT-2, SLIT homolog 2 99.6 2.9E-15 9.8E-20 122.2 8.6 106 2-135 56-162 (220)
16 4fcg_A Uncharacterized protein 99.6 2.8E-15 9.4E-20 129.5 8.6 78 2-82 103-189 (328)
17 2z7x_B TOLL-like receptor 1, v 99.6 4E-15 1.4E-19 135.6 10.0 151 2-161 323-485 (520)
18 2wfh_A SLIT homolog 2 protein 99.6 5.5E-15 1.9E-19 118.2 9.6 71 7-82 14-84 (193)
19 3v47_A TOLL-like receptor 5B a 99.6 5.9E-15 2E-19 132.2 10.5 131 3-161 275-412 (455)
20 3vq2_A TLR4, TOLL-like recepto 99.6 4.3E-15 1.5E-19 137.8 8.6 154 1-162 397-563 (606)
21 3j0a_A TOLL-like receptor 5; m 99.6 2.2E-15 7.4E-20 145.4 6.6 146 3-160 401-563 (844)
22 2z62_A TOLL-like receptor 4, v 99.5 2.5E-14 8.5E-19 120.1 11.3 150 3-161 76-241 (276)
23 2v9t_B SLIT homolog 2 protein 99.5 1.1E-14 3.8E-19 118.7 8.9 107 1-135 54-161 (220)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.2E-14 4.3E-19 133.9 9.8 151 2-161 352-514 (562)
25 4fcg_A Uncharacterized protein 99.5 9.4E-15 3.2E-19 126.2 7.8 120 2-135 149-286 (328)
26 4g8a_A TOLL-like receptor 4; l 99.5 1.4E-14 4.9E-19 134.2 8.9 125 3-135 52-182 (635)
27 1w8a_A SLIT protein; signaling 99.5 2.7E-14 9.4E-19 113.9 9.1 125 6-161 11-143 (192)
28 2z66_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 121.6 9.1 152 1-160 99-264 (306)
29 2xot_A Amphoterin-induced prot 99.5 8.3E-15 2.8E-19 128.1 6.1 151 3-160 39-205 (361)
30 3m19_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 116.0 11.2 142 3-155 14-166 (251)
31 2je0_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 108.3 7.7 77 3-82 17-94 (149)
32 4eco_A Uncharacterized protein 99.5 1.3E-14 4.5E-19 135.9 5.7 122 1-135 204-362 (636)
33 2o6s_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 111.7 9.4 107 1-135 50-157 (208)
34 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 113.5 9.8 106 1-135 62-168 (229)
35 1ozn_A Reticulon 4 receptor; N 99.5 1.4E-13 4.8E-18 116.0 10.8 145 3-155 32-188 (285)
36 4g8a_A TOLL-like receptor 4; l 99.5 8.7E-14 3E-18 128.8 10.1 133 2-161 444-584 (635)
37 4eco_A Uncharacterized protein 99.5 2.8E-14 9.5E-19 133.7 6.7 127 14-154 194-363 (636)
38 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 3.9E-18 108.5 9.1 73 6-82 10-82 (177)
39 3rfs_A Internalin B, repeat mo 99.5 1.2E-13 4.1E-18 115.9 9.5 127 1-135 83-214 (272)
40 3zyj_A Leucine-rich repeat-con 99.5 1.5E-13 5E-18 123.1 10.5 81 1-82 86-166 (440)
41 4ecn_A Leucine-rich repeat pro 99.5 4.7E-14 1.6E-18 136.1 7.7 63 19-82 440-521 (876)
42 3zyi_A Leucine-rich repeat-con 99.5 1.6E-13 5.5E-18 123.2 10.7 81 1-82 97-177 (452)
43 2ell_A Acidic leucine-rich nuc 99.5 1.5E-13 5E-18 106.9 9.0 78 2-82 23-101 (168)
44 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 107.5 8.6 101 4-135 10-111 (170)
45 2z63_A TOLL-like receptor 4, v 99.4 1.6E-13 5.5E-18 126.0 9.4 148 2-161 372-535 (570)
46 2o6q_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 112.8 10.1 127 1-135 83-214 (270)
47 3t6q_A CD180 antigen; protein- 99.4 1.2E-13 4.1E-18 128.1 7.8 152 1-161 398-564 (606)
48 4ezg_A Putative uncharacterize 99.4 2.6E-13 8.8E-18 108.5 8.6 75 3-82 44-118 (197)
49 3zyi_A Leucine-rich repeat-con 99.4 3.9E-13 1.3E-17 120.7 9.9 79 3-82 75-153 (452)
50 2z80_A TOLL-like receptor 2, v 99.4 2.9E-13 9.8E-18 117.6 8.6 78 3-82 76-155 (353)
51 3vq2_A TLR4, TOLL-like recepto 99.4 3.1E-13 1.1E-17 125.2 9.1 125 3-135 32-162 (606)
52 2xot_A Amphoterin-induced prot 99.4 2.6E-13 9.1E-18 118.5 8.2 119 6-135 21-145 (361)
53 2o6r_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 103.7 10.1 105 3-135 28-133 (177)
54 2z62_A TOLL-like receptor 4, v 99.4 3.8E-13 1.3E-17 112.8 8.7 125 3-135 28-158 (276)
55 1ziw_A TOLL-like receptor 3; i 99.4 5.7E-13 2E-17 125.2 10.7 80 2-82 404-510 (680)
56 3zyj_A Leucine-rich repeat-con 99.4 5.4E-13 1.8E-17 119.4 10.1 144 3-154 64-217 (440)
57 3v47_A TOLL-like receptor 5B a 99.4 3E-13 1E-17 121.0 8.2 107 1-135 297-404 (455)
58 4ecn_A Leucine-rich repeat pro 99.4 1.4E-13 4.7E-18 132.9 6.3 81 2-82 447-554 (876)
59 3oja_A Leucine-rich immune mol 99.4 1.4E-13 4.9E-18 125.0 5.8 145 3-160 99-253 (487)
60 3t6q_A CD180 antigen; protein- 99.4 4.7E-13 1.6E-17 124.1 9.3 125 3-135 33-162 (606)
61 2id5_A Lingo-1, leucine rich r 99.4 3.3E-13 1.1E-17 121.7 7.9 78 4-82 33-110 (477)
62 3oja_B Anopheles plasmodium-re 99.4 8E-13 2.7E-17 122.8 10.7 80 2-82 98-177 (597)
63 1wwl_A Monocyte differentiatio 99.4 2.7E-13 9.3E-18 116.0 6.6 79 2-82 94-179 (312)
64 1p9a_G Platelet glycoprotein I 99.4 9.1E-13 3.1E-17 111.8 9.8 142 3-155 31-183 (290)
65 4b8c_D Glucose-repressible alc 99.4 4.1E-13 1.4E-17 127.6 8.3 80 2-85 223-303 (727)
66 1wwl_A Monocyte differentiatio 99.4 1.3E-13 4.6E-18 117.9 4.3 143 2-154 120-284 (312)
67 2r9u_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 104.1 8.0 100 5-135 14-114 (174)
68 2z66_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 112.7 8.6 142 2-155 77-234 (306)
69 2xwt_C Thyrotropin receptor; s 99.4 4E-13 1.4E-17 110.4 6.4 79 1-82 53-136 (239)
70 2id5_A Lingo-1, leucine rich r 99.4 5.7E-13 2E-17 120.1 7.6 149 1-157 54-213 (477)
71 2ell_A Acidic leucine-rich nuc 99.4 2.5E-13 8.6E-18 105.6 4.0 104 2-135 48-156 (168)
72 1xku_A Decorin; proteoglycan, 99.4 3.7E-12 1.3E-16 109.4 11.7 77 2-82 75-151 (330)
73 3oja_B Anopheles plasmodium-re 99.4 1.5E-12 5.1E-17 120.9 9.8 124 3-135 51-180 (597)
74 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 102.3 7.7 79 3-82 30-108 (170)
75 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-12 5.6E-17 101.9 8.4 78 1-82 17-94 (176)
76 1dce_A Protein (RAB geranylger 99.4 1.3E-12 4.5E-17 120.8 9.1 99 4-135 442-542 (567)
77 2z81_A CD282 antigen, TOLL-lik 99.4 5.7E-13 2E-17 122.0 6.5 79 3-82 26-104 (549)
78 3o6n_A APL1; leucine-rich repe 99.4 2.9E-12 9.8E-17 112.7 10.5 80 2-82 92-171 (390)
79 2z80_A TOLL-like receptor 2, v 99.3 1.3E-12 4.5E-17 113.4 7.8 121 3-135 52-183 (353)
80 2r9u_A Variable lymphocyte rec 99.3 1.7E-12 5.8E-17 101.9 7.7 79 3-82 33-111 (174)
81 2z81_A CD282 antigen, TOLL-lik 99.3 6.6E-13 2.3E-17 121.5 6.0 107 1-135 48-157 (549)
82 4ezg_A Putative uncharacterize 99.3 1.2E-12 4.1E-17 104.6 6.7 123 2-155 65-192 (197)
83 2z63_A TOLL-like receptor 4, v 99.3 1.9E-12 6.4E-17 118.9 8.7 125 3-135 28-158 (570)
84 1dce_A Protein (RAB geranylger 99.3 1.9E-12 6.4E-17 119.8 8.1 77 2-82 462-539 (567)
85 1ziw_A TOLL-like receptor 3; i 99.3 2.8E-12 9.7E-17 120.4 9.0 80 2-82 48-127 (680)
86 4glp_A Monocyte differentiatio 99.3 2.5E-12 8.6E-17 109.8 7.6 79 3-82 91-175 (310)
87 3o6n_A APL1; leucine-rich repe 99.3 3.7E-12 1.3E-16 111.9 8.8 125 2-135 44-174 (390)
88 3j0a_A TOLL-like receptor 5; m 99.3 1.4E-12 4.9E-17 125.7 5.9 126 2-135 23-157 (844)
89 2wfh_A SLIT homolog 2 protein 99.3 4.3E-12 1.5E-16 101.2 7.7 82 3-86 31-114 (193)
90 1xku_A Decorin; proteoglycan, 99.3 6.9E-12 2.4E-16 107.8 9.5 123 1-135 143-272 (330)
91 3oja_A Leucine-rich immune mol 99.3 2.5E-12 8.4E-17 116.8 6.8 64 2-68 33-96 (487)
92 2ifg_A High affinity nerve gro 99.3 4.4E-12 1.5E-16 109.7 8.1 73 7-82 12-86 (347)
93 2ft3_A Biglycan; proteoglycan, 99.3 1.5E-11 5.1E-16 105.8 11.1 78 1-82 76-153 (332)
94 2z7x_B TOLL-like receptor 1, v 99.3 2.5E-12 8.7E-17 117.0 6.4 75 4-82 22-96 (520)
95 3o53_A Protein LRIM1, AGAP0063 99.3 2.2E-12 7.6E-17 110.5 5.5 145 3-159 99-252 (317)
96 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.6E-16 105.2 9.4 137 2-156 67-212 (291)
97 1a9n_A U2A', U2A'; complex (nu 99.3 2.4E-12 8.1E-17 101.0 4.5 101 3-135 42-149 (176)
98 3o53_A Protein LRIM1, AGAP0063 99.3 4.6E-12 1.6E-16 108.5 6.1 73 2-82 33-105 (317)
99 2ft3_A Biglycan; proteoglycan, 99.3 3.8E-11 1.3E-15 103.3 11.7 143 2-155 101-275 (332)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 7.8E-12 2.7E-16 115.1 7.8 115 5-135 33-155 (562)
101 2xwt_C Thyrotropin receptor; s 99.2 4.7E-12 1.6E-16 104.0 5.4 142 3-157 31-192 (239)
102 1m9s_A Internalin B; cell inva 99.2 2.3E-11 7.8E-16 113.3 10.2 137 2-155 64-208 (605)
103 2je0_A Acidic leucine-rich nuc 99.2 9.1E-12 3.1E-16 94.7 6.1 78 2-82 41-119 (149)
104 4glp_A Monocyte differentiatio 99.2 7.8E-12 2.7E-16 106.7 6.3 144 2-155 116-283 (310)
105 2ifg_A High affinity nerve gro 99.2 1E-11 3.5E-16 107.5 7.0 83 2-86 30-115 (347)
106 1h6u_A Internalin H; cell adhe 99.2 3.8E-11 1.3E-15 102.5 10.1 74 2-82 62-135 (308)
107 1h6u_A Internalin H; cell adhe 99.2 4.7E-11 1.6E-15 102.0 10.5 74 2-82 84-157 (308)
108 4b8c_D Glucose-repressible alc 99.2 2E-11 6.8E-16 116.0 8.5 115 5-135 193-325 (727)
109 4fmz_A Internalin; leucine ric 99.2 5.4E-11 1.8E-15 102.6 8.8 140 2-155 198-344 (347)
110 1xeu_A Internalin C; cellular 99.2 8.7E-11 3E-15 98.1 9.2 138 2-158 40-186 (263)
111 1h6t_A Internalin B; cell adhe 99.1 2.1E-10 7.3E-15 97.1 10.3 137 2-155 45-189 (291)
112 3cvr_A Invasion plasmid antige 99.1 1.3E-10 4.3E-15 107.5 9.1 54 3-65 100-153 (571)
113 1ds9_A Outer arm dynein; leuci 99.1 4.4E-12 1.5E-16 101.3 -1.2 76 3-82 18-99 (198)
114 4fmz_A Internalin; leucine ric 99.1 1.8E-10 6.3E-15 99.3 8.9 118 2-135 220-342 (347)
115 1o6v_A Internalin A; bacterial 99.1 3.1E-10 1.1E-14 102.1 9.9 73 3-82 243-315 (466)
116 3bz5_A Internalin-J, INLJ; leu 99.1 5E-10 1.7E-14 100.8 10.8 72 2-82 41-112 (457)
117 1jl5_A Outer protein YOPM; leu 99.1 4.4E-10 1.5E-14 101.1 10.2 113 3-135 131-246 (454)
118 1m9s_A Internalin B; cell inva 99.1 4.3E-10 1.5E-14 104.6 9.7 118 2-135 86-206 (605)
119 1o6v_A Internalin A; bacterial 99.1 3.8E-10 1.3E-14 101.5 9.1 117 1-135 263-384 (466)
120 1xeu_A Internalin C; cellular 99.1 3.8E-10 1.3E-14 94.2 8.2 115 2-135 62-181 (263)
121 1ds9_A Outer arm dynein; leuci 99.0 6.1E-12 2.1E-16 100.5 -2.8 102 2-135 47-149 (198)
122 2ast_B S-phase kinase-associat 99.0 3.4E-11 1.2E-15 103.4 1.7 80 2-82 92-174 (336)
123 3cvr_A Invasion plasmid antige 99.0 7.5E-10 2.5E-14 102.3 9.8 67 3-82 80-146 (571)
124 1jl5_A Outer protein YOPM; leu 99.0 4.6E-11 1.6E-15 107.5 1.4 63 2-66 10-85 (454)
125 3bz5_A Internalin-J, INLJ; leu 99.0 1.4E-09 4.7E-14 97.9 10.7 71 2-82 84-154 (457)
126 2ast_B S-phase kinase-associat 99.0 2.2E-10 7.5E-15 98.3 3.4 80 2-82 117-201 (336)
127 2ca6_A RAN GTPase-activating p 99.0 1.5E-10 5.1E-15 101.6 2.1 65 2-67 59-137 (386)
128 4ay9_X Follicle-stimulating ho 98.9 9.3E-10 3.2E-14 95.4 6.6 78 3-82 30-110 (350)
129 2ca6_A RAN GTPase-activating p 98.9 2.5E-10 8.6E-15 100.1 1.7 125 3-135 159-312 (386)
130 3goz_A Leucine-rich repeat-con 98.9 4.6E-10 1.6E-14 97.8 3.0 78 4-82 23-115 (362)
131 3rw6_A Nuclear RNA export fact 98.9 1.6E-09 5.4E-14 90.7 6.0 78 2-82 169-257 (267)
132 3goz_A Leucine-rich repeat-con 98.9 8E-10 2.7E-14 96.2 4.2 74 8-82 3-86 (362)
133 3g06_A SSPH2 (leucine-rich rep 98.8 9.5E-09 3.2E-13 95.9 8.1 14 52-65 181-194 (622)
134 3g06_A SSPH2 (leucine-rich rep 98.8 2.3E-08 8E-13 93.2 9.9 55 3-66 101-155 (622)
135 4ay9_X Follicle-stimulating ho 98.8 3.8E-09 1.3E-13 91.5 4.2 73 6-82 12-85 (350)
136 1z7x_W Ribonuclease inhibitor; 98.8 5.6E-10 1.9E-14 99.7 -1.3 68 2-69 226-301 (461)
137 1z7x_W Ribonuclease inhibitor; 98.7 5.3E-09 1.8E-13 93.4 2.0 79 3-82 28-119 (461)
138 3ogk_B Coronatine-insensitive 98.5 5.9E-08 2E-12 89.3 4.6 79 2-82 163-249 (592)
139 3sb4_A Hypothetical leucine ri 98.5 3.2E-07 1.1E-11 78.6 8.4 71 51-134 225-305 (329)
140 3rw6_A Nuclear RNA export fact 98.4 5.5E-08 1.9E-12 81.3 2.0 55 26-82 168-226 (267)
141 3sb4_A Hypothetical leucine ri 98.4 4.9E-07 1.7E-11 77.4 6.4 101 2-132 225-327 (329)
142 3un9_A NLR family member X1; l 98.3 7.4E-08 2.5E-12 84.4 0.2 17 119-135 204-220 (372)
143 3un9_A NLR family member X1; l 98.3 5.9E-08 2E-12 85.0 -0.6 126 3-135 101-248 (372)
144 1io0_A Tropomodulin; LRR prote 98.1 6.3E-07 2.2E-11 70.6 1.5 80 2-82 35-127 (185)
145 3ogk_B Coronatine-insensitive 98.1 4.4E-07 1.5E-11 83.4 0.1 127 2-135 377-522 (592)
146 2p1m_B Transport inhibitor res 97.9 2.4E-06 8.1E-11 78.5 1.7 80 3-82 105-190 (594)
147 2p1m_B Transport inhibitor res 97.9 2E-06 6.9E-11 79.0 -0.0 35 2-36 371-405 (594)
148 1io0_A Tropomodulin; LRR prote 97.8 9E-06 3.1E-10 63.9 2.8 80 2-82 64-157 (185)
149 4fdw_A Leucine rich hypothetic 97.8 6E-05 2E-09 66.5 7.8 75 4-82 158-232 (401)
150 3rfe_A Platelet glycoprotein I 97.5 0.00013 4.3E-09 54.0 5.1 57 6-65 11-68 (130)
151 4fdw_A Leucine rich hypothetic 97.1 0.00056 1.9E-08 60.2 5.6 78 1-82 224-306 (401)
152 3e4g_A ATP synthase subunit S, 97.1 0.00012 4E-09 57.1 1.1 78 4-82 62-145 (176)
153 2ra8_A Uncharacterized protein 97.0 0.0001 3.4E-09 64.2 -0.2 81 2-82 218-313 (362)
154 2ra8_A Uncharacterized protein 97.0 0.00027 9.2E-09 61.4 2.3 56 2-61 171-228 (362)
155 4h09_A Hypothetical leucine ri 96.6 0.0061 2.1E-07 52.6 8.0 56 26-82 261-316 (379)
156 3rfe_A Platelet glycoprotein I 96.6 0.0023 7.7E-08 47.1 4.4 38 3-41 31-68 (130)
157 4gt6_A Cell surface protein; l 96.5 0.0073 2.5E-07 52.6 7.9 103 2-135 264-366 (394)
158 3e4g_A ATP synthase subunit S, 96.5 0.0011 3.9E-08 51.4 2.3 81 27-135 60-148 (176)
159 4fs7_A Uncharacterized protein 96.0 0.011 3.6E-07 51.5 6.3 75 2-82 275-349 (394)
160 4fs7_A Uncharacterized protein 94.9 0.046 1.6E-06 47.4 6.6 120 1-134 251-374 (394)
161 4h09_A Hypothetical leucine ri 94.7 0.066 2.3E-06 46.0 6.9 77 2-82 262-339 (379)
162 1pgv_A TMD-1, tropomodulin TMD 94.6 0.016 5.5E-07 45.7 2.6 63 3-66 41-112 (197)
163 4gt6_A Cell surface protein; l 94.5 0.07 2.4E-06 46.3 6.7 78 1-82 286-363 (394)
164 1pgv_A TMD-1, tropomodulin TMD 93.3 0.046 1.6E-06 43.1 2.8 59 3-62 70-136 (197)
165 2ks1_B Epidermal growth factor 86.3 0.26 9E-06 28.6 1.2 19 203-221 20-38 (44)
166 2k1k_A Ephrin type-A receptor 80.8 0.43 1.5E-05 26.8 0.5 23 195-217 11-33 (38)
167 2l9u_A Receptor tyrosine-prote 76.5 1.2 4.3E-05 24.0 1.5 25 198-222 10-34 (40)
168 2l2t_A Receptor tyrosine-prote 75.3 0.64 2.2E-05 27.0 0.2 18 204-221 20-37 (44)
169 2jwa_A Receptor tyrosine-prote 68.0 1.1 3.6E-05 26.0 -0.0 25 197-221 14-38 (44)
170 2k9y_A Ephrin type-A receptor 49.3 4.1 0.00014 22.9 0.3 7 199-205 18-24 (41)
171 2klu_A T-cell surface glycopro 37.1 9.5 0.00032 23.9 0.6 18 200-217 12-29 (70)
172 2l34_A TYRO protein tyrosine k 34.8 11 0.00037 20.2 0.5 23 195-217 7-29 (33)
173 2lz0_A Uncharacterized protein 22.3 53 0.0018 22.1 2.4 19 120-138 37-55 (100)
174 2llm_A Amyloid beta A4 protein 23.8 25 0.00085 20.0 0.0 22 196-217 18-40 (43)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2e-23 Score=199.59 Aligned_cols=108 Identities=26% Similarity=0.378 Sum_probs=78.4
Q ss_pred CCCCEEeccCCccCCCcChhhhccccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeeccccccc
Q 048290 52 GFIQVLDLSLNIISGKIPKCFNNFSAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYK 122 (253)
Q Consensus 52 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~ 122 (253)
++|+.|||++|+++|.+|..++++++|+.|+ .|.+ .|.+|.. ..+++++|. ++|.+|..+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l----~g~ip~~l~~L~~L~~LdLs~N~-------l~g~ip~~l 700 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI----SGSIPDEVGDLRGLNILDLSSNK-------LDGRIPQAM 700 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSC-------CEECCCGGG
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc----CCCCChHHhCCCCCCEEECCCCc-------ccCcCChHH
Confidence 4455566666666666666666666666666 3334 3345543 223445554 688899999
Q ss_pred ccccceeeeccCC-----CCCCCCCCCCCCccccCCcCCCCCccCCCCCCCCCC
Q 048290 123 STLGLVRCLDLSR-----KIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEES 171 (253)
Q Consensus 123 ~~l~~L~~LdLS~-----~iP~~~~l~~~~~~~~~gN~~LCg~~~~~~C~~~~~ 171 (253)
+.++.|+.||||+ .||.+++|.+++..+|.|||+|||.|+. +|.....
T Consensus 701 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 9999999999887 8999999999999999999999999987 8975543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=8.3e-20 Score=156.90 Aligned_cols=155 Identities=29% Similarity=0.438 Sum_probs=118.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCC-CCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG-FIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|++|+|++|++++.+|..+. .+++|++|+|++|+++|.+|..++.++ +|+.|+|++|++++.+|..+..++ |+.
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 57888888888888888888887 788888888888888888888888887 888888888888888888777776 777
Q ss_pred cc--CCCCCccc--------------------ccccccC------CCcccccceeeeeEEEeecccccccccccceeeec
Q 048290 81 ER--CSNPTIGF--------------------AKLIFVP------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLD 132 (253)
Q Consensus 81 L~--~n~~~~~~--------------------~~~ip~~------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~Ld 132 (253)
|+ .|.+.... .+.+|.. ..+.+.+|. +++.+|..+..++.|+.||
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-------IYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC-------CEECCCGGGGGCTTCCEEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc-------ccCcCChHHhcCcCCCEEE
Confidence 76 33221100 1111111 122233333 5888999999999999999
Q ss_pred cCC-----CCCCCCCCCCCCccccCCcCCCCCccCCCCC
Q 048290 133 LSR-----KIPLGTQLQSFNASVYAGNLELCGLPLANKC 166 (253)
Q Consensus 133 LS~-----~iP~~~~l~~~~~~~~~gN~~LCg~~~~~~C 166 (253)
|++ .+|...++..+....+.+|+++||.|+. .|
T Consensus 275 Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 998 7888888899999999999999998876 67
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.66 E-value=2.4e-16 Score=150.62 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=50.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|+++|.+|.++. ++++|++|+|++|+++|.+|..++.+++|++|+|++|+++|.+|..++++++|+.|
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 45566666666666666666665 56666666666666666666666666666666666666666666666666666665
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 544 ~ 544 (768)
T 3rgz_A 544 D 544 (768)
T ss_dssp E
T ss_pred E
Confidence 5
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=2.6e-16 Score=128.50 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=99.1
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|+|++|++++..+..+. .+++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 3678888888888865555676 788888888888888887788888888888888888888855556678888888887
Q ss_pred CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcCC
Q 048290 83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNLE 156 (253)
Q Consensus 83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~~ 156 (253)
+.+|. +++..|..+..+++|+.|||++ .+|.. ..+..+....+.+|+.
T Consensus 111 -------------------L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 -------------------LNANK-------INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -------------------CCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred -------------------CCCCC-------CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 22222 3667778888899999999987 34432 3455666677889998
Q ss_pred CCCcc
Q 048290 157 LCGLP 161 (253)
Q Consensus 157 LCg~~ 161 (253)
-|.+.
T Consensus 165 ~c~c~ 169 (220)
T 2v9t_B 165 ICDCH 169 (220)
T ss_dssp ECSGG
T ss_pred CCCCc
Confidence 88643
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=8.8e-16 Score=126.01 Aligned_cols=130 Identities=25% Similarity=0.215 Sum_probs=100.4
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|+|++|++++..|..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 5788999999999987788887 799999999999999766566678899999999999999977777788899999888
Q ss_pred -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290 83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL 155 (253)
Q Consensus 83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~ 155 (253)
+++. ++ .+|..+..+++|+.|||++ .+|.. ..+..+....+.+|+
T Consensus 119 Ls~N~---------------------------l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 119 MCCNK---------------------------LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSC---------------------------CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCc---------------------------cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 3322 13 4566777888888888887 44432 345556666688888
Q ss_pred CCCCcc
Q 048290 156 ELCGLP 161 (253)
Q Consensus 156 ~LCg~~ 161 (253)
.-|.++
T Consensus 171 ~~c~c~ 176 (229)
T 3e6j_A 171 WDCECR 176 (229)
T ss_dssp BCTTBG
T ss_pred ccCCcc
Confidence 887653
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.2e-15 Score=126.64 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=112.1
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|+|++|++++..|..+. ++++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 4688999999999987777787 899999999999999988888899999999999999999977778889999999998
Q ss_pred --CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290 83 --CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY 151 (253)
Q Consensus 83 --~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~ 151 (253)
.|.+.......+ +.-..+.+.+|. +++..+..++.+++|+.|||++ .+|.. ..+..+....+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQ-------LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCc-------CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 444432111111 111333445554 5677777889999999999988 44432 34566667778
Q ss_pred CCcCCCCC
Q 048290 152 AGNLELCG 159 (253)
Q Consensus 152 ~gN~~LCg 159 (253)
.+|+.-|.
T Consensus 187 ~~N~~~c~ 194 (251)
T 3m19_A 187 FGNQFDCS 194 (251)
T ss_dssp CSCCBCTT
T ss_pred eCCceeCC
Confidence 89988775
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=2e-16 Score=135.72 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=92.9
Q ss_pred CCcceEEECCC-CcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|++|+|++ |++++.+|..+. ++++|++|+|++|++++.+|..+..+++|++|||++|.+++.+|..+.++++|+.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 67899999994 999989999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred cc--CCCCCcccccccccC--------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER--CSNPTIGFAKLIFVP--------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~--~n~~~~~~~~~ip~~--------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .|.+. +.+|.. ..+.+.+|. +++.+|..+..++ |+.|||++
T Consensus 154 L~L~~N~l~----~~~p~~l~~l~~~L~~L~L~~N~-------l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 154 ITFDGNRIS----GAIPDSYGSFSKLFTSMTISRNR-------LTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSCCE----EECCGGGGCCCTTCCEEECCSSE-------EEEECCGGGGGCC-CSEEECCS
T ss_pred EECcCCccc----CcCCHHHhhhhhcCcEEECcCCe-------eeccCChHHhCCc-ccEEECcC
Confidence 88 44442 233322 122333333 4556666666655 66666665
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=125.56 Aligned_cols=130 Identities=20% Similarity=0.109 Sum_probs=91.3
Q ss_pred cceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
.++.|+|++|++++..|. .+. .+++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|+.|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 467888888888866453 355 788888888888888877777788888888888888888877777788888888887
Q ss_pred -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CC-CCC-CCCCCCCccccCCcC
Q 048290 83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KI-PLG-TQLQSFNASVYAGNL 155 (253)
Q Consensus 83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~i-P~~-~~l~~~~~~~~~gN~ 155 (253)
+++. +++..|..+..+++|+.|||++ .+ |.. ..+..+....+.+|+
T Consensus 112 Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNR---------------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSC---------------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCc---------------------------CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 3222 3555666677777777777776 22 222 334455555677777
Q ss_pred CCCCcc
Q 048290 156 ELCGLP 161 (253)
Q Consensus 156 ~LCg~~ 161 (253)
.-|.++
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 776543
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.9e-15 Score=127.01 Aligned_cols=150 Identities=20% Similarity=0.177 Sum_probs=112.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++ ++ .+. .+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus 62 l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-IS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCC-CG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC-ch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 6789999999999986 44 676 79999999999999998777778999999999999999998777888999999999
Q ss_pred c--CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccc
Q 048290 82 R--CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASV 150 (253)
Q Consensus 82 ~--~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~ 150 (253)
+ .|.+.......+ +.-..+.+.+|. +++..+..++.+++|+.|+|++ .+|.. ..+..+....
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-------LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCC-------cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 8 444432111111 111333444544 5777777788999999999987 34432 4566777777
Q ss_pred cCCcCCCCCcc
Q 048290 151 YAGNLELCGLP 161 (253)
Q Consensus 151 ~~gN~~LCg~~ 161 (253)
+.+|+..|.+|
T Consensus 212 l~~N~~~~~~~ 222 (272)
T 3rfs_A 212 LHDNPWDCTCP 222 (272)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCccccCc
Confidence 89999888654
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.5e-15 Score=126.06 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=89.6
Q ss_pred CCcceEEECCCCcCccCCChh-HhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTW-TGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~-~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|++|+|++|+++. +|.. +. .+++|++|+|++|++++..+..+..+++|++|+|++|.+++..|..|.++++|+.
T Consensus 60 l~~L~~L~l~~n~l~~-i~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQT-LPAGIFK-ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp CTTCCEEECCSSCCSC-CCTTTTS-SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCe-eChhhhc-CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 4566666666666663 3333 33 5666666666666666555555666666777777777766666666666677776
Q ss_pred cc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290 81 ER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS 149 (253)
Q Consensus 81 L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~ 149 (253)
|+ .|.+.......+... ..+.+.++. +++..+..+..+++|+.|||++ .+|.. ..+..+...
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCc-------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 66 333321001111111 222333443 4666666788888888888887 44543 345566667
Q ss_pred ccCCcCCCCCcc
Q 048290 150 VYAGNLELCGLP 161 (253)
Q Consensus 150 ~~~gN~~LCg~~ 161 (253)
.+.+||+-|.+.
T Consensus 211 ~l~~N~~~c~c~ 222 (270)
T 2o6q_A 211 QLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCBCCSSS
T ss_pred EecCCCeeCCCc
Confidence 788998888653
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.9e-15 Score=128.39 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=104.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++ +|.. . .+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus 54 l~~L~~L~L~~n~l~~-~~~~-~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTK-LQVD-G-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp CTTCCEEECTTSCCCE-EECC-S-CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCc-ccCC-C-CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 6788888888888885 4433 4 6888888888888887 677788888888888888888887777788888888888
Q ss_pred c--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCcccc
Q 048290 82 R--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVY 151 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~ 151 (253)
+ .|.+.....+.+... ..+.+.+|. +++..+..+..+++|+.|+|++ .+|.+ .....+....+
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-------CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCc-------CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 8 344422111111111 233445554 4666666788899999999998 56665 23445666678
Q ss_pred CCcCCCCCc
Q 048290 152 AGNLELCGL 160 (253)
Q Consensus 152 ~gN~~LCg~ 160 (253)
.|||+.|.+
T Consensus 203 ~~Np~~C~c 211 (290)
T 1p9a_G 203 HGNPWLCNC 211 (290)
T ss_dssp CSCCBCCSG
T ss_pred CCCCccCcC
Confidence 999999964
No 12
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.3e-15 Score=120.17 Aligned_cols=105 Identities=23% Similarity=0.186 Sum_probs=67.2
Q ss_pred cceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+|+.|+|++|++++..+. .+. .+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|+.|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccc-cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 456666666666644433 244 566666666666666666666666666666666666666665555566666666665
Q ss_pred CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+.+|. +++.+|..+..+++|+.|+|++
T Consensus 109 -------------------L~~N~-------l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 109 -------------------LYDNQ-------ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -------------------CCSSC-------CCEECTTSSTTCTTCCEEECTT
T ss_pred -------------------CCCCc-------CCeeCHHHhhcCCCCCEEEeCC
Confidence 22222 4677778888888888888876
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=5e-15 Score=119.31 Aligned_cols=130 Identities=21% Similarity=0.172 Sum_probs=98.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFD-ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhc-ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5689999999999965555566 799999999999999976666788999999999999999977777789999999988
Q ss_pred -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290 83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL 155 (253)
Q Consensus 83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~ 155 (253)
.++. +++..+..+..+++|+.|+|++ .+|.. ..+..+....+.+|+
T Consensus 107 L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQ---------------------------LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSC---------------------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCc---------------------------CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 3322 2444555567777777777776 34432 345556666677777
Q ss_pred CCCCc
Q 048290 156 ELCGL 160 (253)
Q Consensus 156 ~LCg~ 160 (253)
..|..
T Consensus 160 ~~~~~ 164 (208)
T 2o6s_A 160 WDCTC 164 (208)
T ss_dssp BCCCT
T ss_pred eecCC
Confidence 77654
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=2.3e-15 Score=126.99 Aligned_cols=152 Identities=18% Similarity=0.099 Sum_probs=80.0
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCc-CcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNK-FHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|++|+|++|.+++..|..+. .+++|++|+|++|. ++...|..+..+++|++|++++|.+++..|..+.++++|+.
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 44556666666666554455555 55566666666554 44444555555555555555555555555555555555555
Q ss_pred cc--CCCCCccccc-------------------ccccC--------CCcccccceeeeeEEEeecccccccccccceeee
Q 048290 81 ER--CSNPTIGFAK-------------------LIFVP--------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCL 131 (253)
Q Consensus 81 L~--~n~~~~~~~~-------------------~ip~~--------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~L 131 (253)
|+ .|.+...... .++.. ..+.+.+|. +++..|..+..+++|+.|
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-------VAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEE
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-------ccccCHhHccCcccccEe
Confidence 55 2222110000 11110 111222222 455667777777777777
Q ss_pred ccCC----CCCCC--CCCCCCCccccCCcCCCCCcc
Q 048290 132 DLSR----KIPLG--TQLQSFNASVYAGNLELCGLP 161 (253)
Q Consensus 132 dLS~----~iP~~--~~l~~~~~~~~~gN~~LCg~~ 161 (253)
||++ .+|.. ..+..+....+.+|+..|.++
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 7776 33321 345556666678888877654
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=122.23 Aligned_cols=106 Identities=18% Similarity=0.087 Sum_probs=95.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|+|++|++++..|..+. ++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|+.|
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 67899999999999987777888 89999999999999998888889999999999999999999889999999999999
Q ss_pred c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ .++. +++..|..+..+++|+.|+|++
T Consensus 135 ~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 135 SLYDNQ---------------------------ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp ECTTSC---------------------------CCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCCc---------------------------CCEECHHHhcCCCCCCEEEecC
Confidence 8 3332 3777788899999999999987
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=2.8e-15 Score=129.53 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=56.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhc-------
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNN------- 74 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~------- 74 (253)
+++|++|+|++|.++ .+|..++ .+++|++|+|++|.++ .+|..++.+++|++|+|++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 456777777777777 6777776 6777777777777777 66777777777777777777777777766543
Q ss_pred --cccCcccc
Q 048290 75 --FSAMTYER 82 (253)
Q Consensus 75 --l~~L~~L~ 82 (253)
+++|+.|+
T Consensus 180 ~~l~~L~~L~ 189 (328)
T 4fcg_A 180 QGLVNLQSLR 189 (328)
T ss_dssp EESTTCCEEE
T ss_pred ccCCCCCEEE
Confidence 66666666
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=135.63 Aligned_cols=151 Identities=20% Similarity=0.135 Sum_probs=119.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcc--cCcccccCCCCCCEEeccCCccCCCcChh-hhccccC
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLSLNIISGKIPKC-FNNFSAM 78 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L 78 (253)
+++|++|++++|++++.+|.++. .+++|++|+|++|++++ .+|..++.+++|+.|||++|.+++.+|.. +..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 57899999999999988999988 89999999999999997 66788999999999999999999877764 8888999
Q ss_pred cccc--CCCCCcccccccccC-CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290 79 TYER--CSNPTIGFAKLIFVP-AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS 149 (253)
Q Consensus 79 ~~L~--~n~~~~~~~~~ip~~-~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~ 149 (253)
+.|+ .|.+.......++.. ..+.+.+|. ++ .+|..+..+++|+.|||++ .+|.. ..+..+...
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-------l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-------IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSC-------CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCc-------cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 9998 444533223333322 445556655 34 7888778999999999998 66764 345666777
Q ss_pred ccCCcCCCCCcc
Q 048290 150 VYAGNLELCGLP 161 (253)
Q Consensus 150 ~~~gN~~LCg~~ 161 (253)
.+.+|+..|.++
T Consensus 474 ~l~~N~~~c~c~ 485 (520)
T 2z7x_B 474 WLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCBCCCHH
T ss_pred ECcCCCCcccCC
Confidence 799999998754
No 18
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=118.22 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=38.6
Q ss_pred EEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 7 VLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 7 ~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
.+++++|+++ .+|..+. ++|+.|+|++|+++ .+|..|..+++|+.|+|++|.+++..|..|.++++|+.|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 4555555555 4554332 35555555555554 4455555555555555555555555455555555555555
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=5.9e-15 Score=132.15 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=106.5
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|++++|++++.+|..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|+.|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 5788899999999888888887 789999999999999888888888999999999999999877788888889998888
Q ss_pred -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290 83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL 155 (253)
Q Consensus 83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~ 155 (253)
+++. +++..|..+..+++|+.|||++ .+|.. ..+..+....+.+|+
T Consensus 354 Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 354 LSYNH---------------------------IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCSSC---------------------------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc---------------------------ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 3222 3666788888899999999987 45543 356667777788998
Q ss_pred CCCCcc
Q 048290 156 ELCGLP 161 (253)
Q Consensus 156 ~LCg~~ 161 (253)
.-|.+|
T Consensus 407 l~~~~~ 412 (455)
T 3v47_A 407 WDCSCP 412 (455)
T ss_dssp BCCCTT
T ss_pred cccCCC
Confidence 888765
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=4.3e-15 Score=137.77 Aligned_cols=154 Identities=13% Similarity=-0.001 Sum_probs=117.8
Q ss_pred CCCcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccC
Q 048290 1 NCSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAM 78 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L 78 (253)
++++|+.|++++|++++..| ..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCeeECCCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 36789999999999998777 5676 89999999999999999899999999999999999999998 478889999999
Q ss_pred cccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCC-CCC
Q 048290 79 TYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQ-SFN 147 (253)
Q Consensus 79 ~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~-~~~ 147 (253)
+.|+ .|.+.......+... ..+.+.+|. +++.+|..+..+++|+.|||++ .+|.. ..+. .+.
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-------LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCc-------CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence 9998 444422111111111 333455554 5888899999999999999998 55654 2332 356
Q ss_pred ccccCCcCCCCCccC
Q 048290 148 ASVYAGNLELCGLPL 162 (253)
Q Consensus 148 ~~~~~gN~~LCg~~~ 162 (253)
...+.+||..|.++.
T Consensus 549 ~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 549 FFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSCCCCCSSTT
T ss_pred EEEccCCCcccCCcc
Confidence 667899999997653
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=145.39 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=73.5
Q ss_pred CcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCcccCcc-cccCCCCCCEEeccCCccC-----CCcChhhhcc
Q 048290 3 SQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQVLDLSLNIIS-----GKIPKCFNNF 75 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l 75 (253)
.+++.|++++|++++.-. ..+. ++++|++|+|++|++++..+. .+..+++|+.|+|++|.++ +..|..|.++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHT-TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred cccceeecccCccccCchhhhhh-cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 345667777777764322 2233 566677777777766644332 2344556666666666654 2333445555
Q ss_pred ccCcccc-CC-CCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCCCCCCC
Q 048290 76 SAMTYER-CS-NPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLGTQLQS 145 (253)
Q Consensus 76 ~~L~~L~-~n-~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~~~l~~ 145 (253)
++|+.|+ ++ ++.......+... ..+.+++|. +++..+..+. ++|+.|||++ .+|. .|..
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~ 548 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-------LTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVS 548 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-------CSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSS
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCC-------CCccChhhhh--ccccEEECCCCcCCCCChh--HhCC
Confidence 5555555 22 2211001111100 222233333 3555554444 5677777765 3332 3555
Q ss_pred CCccccCCcCCCCCc
Q 048290 146 FNASVYAGNLELCGL 160 (253)
Q Consensus 146 ~~~~~~~gN~~LCg~ 160 (253)
+....+.|||+.|.+
T Consensus 549 L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 549 LSVLDITHNKFICEC 563 (844)
T ss_dssp CCEEEEEEECCCCSS
T ss_pred cCEEEecCCCccccc
Confidence 666667777777744
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=2.5e-14 Score=120.10 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=70.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccCccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAMTYE 81 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L 81 (253)
++|++|+|++|++++..|..+. ++++|++|++++|.+++..+..++.+++|+.|++++|.+++ .+|..+.++++|+.|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred cCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 3444444444444433333343 44444444444444444333344445555555555555543 234555555555555
Q ss_pred c--CCCCCcccccccccC---C----CcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCC
Q 048290 82 R--CSNPTIGFAKLIFVP---A----GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSF 146 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~---~----~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~ 146 (253)
+ .|.+.......+... . .+.+.+|. +++..+..+. ..+|+.|||++ .+|.. ..+..+
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-------l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-------MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-------CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-------ccccCccccC-CCcccEEECCCCceeecCHhHhcccccc
Confidence 4 222211000001000 0 11122222 2333343333 33688888887 45543 346666
Q ss_pred CccccCCcCCCCCcc
Q 048290 147 NASVYAGNLELCGLP 161 (253)
Q Consensus 147 ~~~~~~gN~~LCg~~ 161 (253)
....+.+|+.-|.++
T Consensus 227 ~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 227 QKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEECCSSCBCCCTT
T ss_pred cEEEccCCcccccCC
Confidence 777789999888654
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=1.1e-14 Score=118.71 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=93.9
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|+.|+|++|++++..|..+. ++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 367899999999999988898998 8999999999999999766666899999999999999999998999999999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .++. +++..+..+..+++|+.|+|++
T Consensus 133 L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 133 LSLYDNK---------------------------LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp EECCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCc---------------------------CCEECHHHHhCCCCCCEEEeCC
Confidence 98 3332 3666677788899999999987
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=1.2e-14 Score=133.86 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=117.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcc--cCcccccCCCCCCEEeccCCccCCCcCh-hhhccccC
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLSLNIISGKIPK-CFNNFSAM 78 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L 78 (253)
+++|++|++++|++++.+|.++. ++++|++|+|++|++++ .+|..+..+++|+.|+|++|++++.+|. .+..+++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 57899999999999998999998 89999999999999997 3457799999999999999999986775 58889999
Q ss_pred cccc--CCCCCcccccccccC-CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290 79 TYER--CSNPTIGFAKLIFVP-AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS 149 (253)
Q Consensus 79 ~~L~--~n~~~~~~~~~ip~~-~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~ 149 (253)
+.|+ .|.+.......++.. ..+.+.+|. ++ .+|..+..++.|+.|||++ .+|.. ..+..+...
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-------l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-------IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSC-------CC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCc-------Cc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 9999 455533223333322 445555555 34 6777777999999999998 67764 455666677
Q ss_pred ccCCcCCCCCcc
Q 048290 150 VYAGNLELCGLP 161 (253)
Q Consensus 150 ~~~gN~~LCg~~ 161 (253)
.+.+|+.-|.++
T Consensus 503 ~l~~N~~~c~c~ 514 (562)
T 3a79_B 503 WLHDNPWDCTCP 514 (562)
T ss_dssp ECCSCCBCCCHH
T ss_pred EecCCCcCCCcc
Confidence 799999999653
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=9.4e-15 Score=126.18 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=88.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhc---------CCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhh
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGES---------LQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF 72 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~---------l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l 72 (253)
+++|++|+|++|++.+.+|..+. . +++|++|+|++|+++ .+|..++.+++|+.|+|++|.+++ +|..+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLA-STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSE-EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred CcCCCEEECCCCCCccccChhHh-hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 67888999999888888887765 4 888999999999888 788888888999999999999884 66678
Q ss_pred hccccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 73 NNFSAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 73 ~~l~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
..+++|+.|+ .|++.. .+|.. ..+.+.++. +.+.+|..+..+++|+.|||++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~-------~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCS-------NLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp GGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCT-------TCCBCCTTGGGCTTCCEEECTT
T ss_pred ccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCC-------chhhcchhhhcCCCCCEEeCCC
Confidence 8888888888 334422 23322 222333332 3667777777777788888776
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=1.4e-14 Score=134.15 Aligned_cols=125 Identities=21% Similarity=0.023 Sum_probs=94.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+++++|||++|+|++..|..|. ++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3689999999999976667787 899999999999999988788899999999999999999977778899999999999
Q ss_pred --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290 83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~ 135 (253)
.|++.......+..- ..+.+.+|. +++ .+|..++.++.|+.|+|++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNL-------IQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-------CCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCc-------cccCCCchhhccchhhhhhcccC
Confidence 444422111111111 223334443 233 4567777788888888876
No 27
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=2.7e-14 Score=113.90 Aligned_cols=125 Identities=22% Similarity=0.196 Sum_probs=103.5
Q ss_pred eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcc-cccCCCCCCEEeccCCccCCCcChhhhccccCcccc-C
Q 048290 6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-C 83 (253)
Q Consensus 6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~ 83 (253)
+.+++++|+++ .+|..+. .+|++|+|++|++++..+. .++.+++|++|+|++|++++..|..|.++++|+.|+ +
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 68999999997 7898765 3999999999999976664 489999999999999999999999999999999998 3
Q ss_pred CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCC-CCCCCCCccccCCcCCC
Q 048290 84 SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLG-TQLQSFNASVYAGNLEL 157 (253)
Q Consensus 84 n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~-~~l~~~~~~~~~gN~~L 157 (253)
++. +++..+..+..+++|+.|||++ .+|.. ..+..+....+.+|+.-
T Consensus 87 ~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENK---------------------------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCC---------------------------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCc---------------------------CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 332 3677788889999999999998 23433 44566777779999998
Q ss_pred CCcc
Q 048290 158 CGLP 161 (253)
Q Consensus 158 Cg~~ 161 (253)
|..+
T Consensus 140 c~c~ 143 (192)
T 1w8a_A 140 CNCH 143 (192)
T ss_dssp CSGG
T ss_pred CcCc
Confidence 8754
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=2.7e-14 Score=121.59 Aligned_cols=152 Identities=16% Similarity=0.072 Sum_probs=109.1
Q ss_pred CCCcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccC
Q 048290 1 NCSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAM 78 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L 78 (253)
++++|++|++++|++++..+ ..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCEEECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 36789999999999986544 4666 79999999999999998888889999999999999999987 578889999999
Q ss_pred cccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCC-CCC-CCC
Q 048290 79 TYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLG-TQL-QSF 146 (253)
Q Consensus 79 ~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~-~~l-~~~ 146 (253)
+.|+ .|.+.......+... ..+.+.+|. +++..+..+..+++|+.|||++ .+|.. ..+ ..+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-------cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 9998 444422111111111 233444544 4666666788889999999987 23322 223 355
Q ss_pred CccccCCcCCCCCc
Q 048290 147 NASVYAGNLELCGL 160 (253)
Q Consensus 147 ~~~~~~gN~~LCg~ 160 (253)
....+.+|+.-|.+
T Consensus 251 ~~L~L~~N~~~~~c 264 (306)
T 2z66_A 251 AFLNLTQNDFACTC 264 (306)
T ss_dssp CEEECTTCCEECSG
T ss_pred CEEEccCCCeeccc
Confidence 56668888877754
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=8.3e-15 Score=128.05 Aligned_cols=151 Identities=22% Similarity=0.133 Sum_probs=97.1
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
..++.|+|++|+|++..+..+..++++|++|+|++|+|++..|..|..+++|++|||++|++++..+..|.++++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 34778888888888655554422588888888888888877777788888888888888888866667788888888888
Q ss_pred --CCCCCcccccccccC---CCcccccceeeeeEEEeeccccccc---ccccceeeeccCC----CCCCC--CCCCC--C
Q 048290 83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYK---STLGLVRCLDLSR----KIPLG--TQLQS--F 146 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~---~~l~~L~~LdLS~----~iP~~--~~l~~--~ 146 (253)
.|.+.......+... ..+.+.+|. +++..+..+ ..+++|+.|||++ .+|.. ..+.. +
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-------l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-------ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-------CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCc-------CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 444422111111111 223344444 355444445 5688999999987 33321 11111 1
Q ss_pred CccccCCcCCCCCc
Q 048290 147 NASVYAGNLELCGL 160 (253)
Q Consensus 147 ~~~~~~gN~~LCg~ 160 (253)
....+.+||+-|.+
T Consensus 192 ~~l~l~~N~~~C~C 205 (361)
T 2xot_A 192 NGLYLHNNPLECDC 205 (361)
T ss_dssp TTEECCSSCEECCH
T ss_pred ceEEecCCCccCCc
Confidence 33568899998864
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=6.9e-14 Score=115.98 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=105.1
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
...+.++++++.++ .+|..+. ++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35678999999999 6887664 5899999999999998888999999999999999999998888999999999999
Q ss_pred --CCCCCcccccc---cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290 83 --CSNPTIGFAKL---IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY 151 (253)
Q Consensus 83 --~n~~~~~~~~~---ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~ 151 (253)
.|.+....... ++.-..+.+.+|. +++..+..+..++.|+.|+|++ .+|.. ..+..+....+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQ-------LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCc-------CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 44443211111 1111333445544 5666677788899999999987 44442 34455555566
Q ss_pred CCcC
Q 048290 152 AGNL 155 (253)
Q Consensus 152 ~gN~ 155 (253)
.+|.
T Consensus 163 ~~N~ 166 (251)
T 3m19_A 163 STNQ 166 (251)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6663
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3.6e-14 Score=108.28 Aligned_cols=77 Identities=22% Similarity=0.201 Sum_probs=71.6
Q ss_pred CcceEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 3 SQLRVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++. ..++.+++|++|+|++|.+++.+|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 57999999999998 78998887 899999999999999976 789999999999999999998899999999999999
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 94 ~ 94 (149)
T 2je0_A 94 N 94 (149)
T ss_dssp E
T ss_pred E
Confidence 9
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.49 E-value=1.3e-14 Score=135.89 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCCcceEEECCCCcCccC-----------------CChhHh-hcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCC
Q 048290 1 NCSQLRVLDLGKNAFFGE-----------------IPTWTG-ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~-----------------~p~~~~-~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N 62 (253)
++++|++|+|++|+++|. +|..++ .++++|++|+|++|++.|.+|..++++++|++|+|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 367888899999998875 787764 14888999999999888888888888889999999988
Q ss_pred c-cCC-CcChhhhcc------ccCcccc--CCCCCccccccccc--C-------CCcccccceeeeeEEEeecccccccc
Q 048290 63 I-ISG-KIPKCFNNF------SAMTYER--CSNPTIGFAKLIFV--P-------AGTGYYYKYLVNLLLTWKGSENEYKS 123 (253)
Q Consensus 63 ~-l~g-~ip~~l~~l------~~L~~L~--~n~~~~~~~~~ip~--~-------~~l~~~~~~~~~~~~~l~g~~p~~~~ 123 (253)
+ ++| .+|..++++ ++|+.|+ .|.+. .+|. . ..+.+.+|. ++|.+| .++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~-------l~g~ip-~~~ 350 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQ-------LEGKLP-AFG 350 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCC-------CEEECC-CCE
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCc-------Cccchh-hhC
Confidence 8 888 888888876 8888888 44442 3443 1 222333333 355666 566
Q ss_pred cccceeeeccCC
Q 048290 124 TLGLVRCLDLSR 135 (253)
Q Consensus 124 ~l~~L~~LdLS~ 135 (253)
.+++|+.|+|++
T Consensus 351 ~l~~L~~L~L~~ 362 (636)
T 4eco_A 351 SEIKLASLNLAY 362 (636)
T ss_dssp EEEEESEEECCS
T ss_pred CCCCCCEEECCC
Confidence 666666666665
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=9.7e-14 Score=111.72 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=88.8
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|++++..+..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCccCccChhhcC-CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 368899999999999965555566 8999999999999999777777899999999999999999777778999999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .++. +++..+..+..+++|+.|++++
T Consensus 129 L~l~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 129 LRLYQNQ---------------------------LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp EECCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCc---------------------------cceeCHHHhccCCCccEEEecC
Confidence 98 3332 2555555677788888888876
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.1e-13 Score=113.53 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=90.2
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|+++...+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred CccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 368899999999999854445566 8999999999999999877777899999999999999999 88999999999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .++. +++..+..+..+++|+.|+|++
T Consensus 140 L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 140 LALDQNQ---------------------------LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp EECCSSC---------------------------CCCCCTTTTTTCTTCCEEECTT
T ss_pred EECCCCc---------------------------CCccCHHHHhCCCCCCEEEeeC
Confidence 98 3332 3555566788899999999987
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=1.4e-13 Score=116.01 Aligned_cols=145 Identities=17% Similarity=0.061 Sum_probs=106.4
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc-cCCCcChhhhccccCccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI-ISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L 81 (253)
++|+.|+|++|++++..+..+. .+++|++|+|++|.+++..|..+..+++|++|+|++|. ++...|..+..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 5799999999999976667787 89999999999999998889999999999999999997 876668899999999999
Q ss_pred c--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccc
Q 048290 82 R--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASV 150 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~ 150 (253)
+ .|.+.......+... ..+.+.++. +++..+..++.+++|+.|+|++ .+|.. ..+..+....
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-------LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCc-------ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 9 444432111111111 233444444 4666666788888999999987 23331 2344555555
Q ss_pred cCCcC
Q 048290 151 YAGNL 155 (253)
Q Consensus 151 ~~gN~ 155 (253)
+.+|.
T Consensus 184 l~~n~ 188 (285)
T 1ozn_A 184 LHQNR 188 (285)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 66663
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=8.7e-14 Score=128.85 Aligned_cols=133 Identities=20% Similarity=0.172 Sum_probs=99.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCc-ccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH-GNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+.+++.++++.|.+++..|..+. .++.|++|+|++|.+. +.+|..|..+++|++|||++|++++..|..|.++++|+.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 56778888888888877777776 7888888888888744 456777888888888888888888888888888888888
Q ss_pred ccCCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CC-CCC-CCC-CCCCccccCC
Q 048290 81 ERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KI-PLG-TQL-QSFNASVYAG 153 (253)
Q Consensus 81 L~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~i-P~~-~~l-~~~~~~~~~g 153 (253)
|+ +++|. +++..|..+..+++|+.|||++ .+ |.. ..+ ..+....+.+
T Consensus 523 L~-------------------Ls~N~-------l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 523 LN-------------------MSHNN-------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EE-------------------CTTSC-------CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred EE-------------------CCCCc-------CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 87 22222 4777788889999999999998 22 322 222 4556667899
Q ss_pred cCCCCCcc
Q 048290 154 NLELCGLP 161 (253)
Q Consensus 154 N~~LCg~~ 161 (253)
||+-|.+.
T Consensus 577 Np~~C~C~ 584 (635)
T 4g8a_A 577 NDFACTCE 584 (635)
T ss_dssp CCBCCSGG
T ss_pred CCCcccCC
Confidence 99999754
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.48 E-value=2.8e-14 Score=133.67 Aligned_cols=127 Identities=13% Similarity=0.018 Sum_probs=99.2
Q ss_pred cCccCCChhHhhcCCCccEEEccCCcCccc-----------------Cccccc--CCCCCCEEeccCCccCCCcChhhhc
Q 048290 14 AFFGEIPTWTGESLQNLIVLSLKSNKFHGN-----------------IPYQLC--HLGFIQVLDLSLNIISGKIPKCFNN 74 (253)
Q Consensus 14 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-----------------ip~~~~--~l~~L~~LdLs~N~l~g~ip~~l~~ 74 (253)
+++| +|.+++ ++++|++|+|++|+++|. +|..++ ++++|++|+|++|++.|.+|..+++
T Consensus 194 ~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 4556 899998 899999999999999996 999999 9999999999999999999999999
Q ss_pred cccCcccc--CCC-CCccccc-ccccC-------------CCcccccceeeeeEEEeeccccc--ccccccceeeeccCC
Q 048290 75 FSAMTYER--CSN-PTIGFAK-LIFVP-------------AGTGYYYKYLVNLLLTWKGSENE--YKSTLGLVRCLDLSR 135 (253)
Q Consensus 75 l~~L~~L~--~n~-~~~~~~~-~ip~~-------------~~l~~~~~~~~~~~~~l~g~~p~--~~~~l~~L~~LdLS~ 135 (253)
+++|+.|+ .|. + .+ .+|.. ..+.+.++. ++ .+|. .++.+++|+.|++++
T Consensus 272 l~~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-------l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 272 LPEMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNN-------LK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp CSSCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-------CS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCCCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCc-------CC-ccCchhhhccCCCCCEEeCcC
Confidence 99999999 444 4 23 33422 334444544 45 7888 899999999999987
Q ss_pred -----CCCCCCCCCCCCccccCCc
Q 048290 136 -----KIPLGTQLQSFNASVYAGN 154 (253)
Q Consensus 136 -----~iP~~~~l~~~~~~~~~gN 154 (253)
.+|.-..+..+....+.+|
T Consensus 340 N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 340 NQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp CCCEEECCCCEEEEEESEEECCSS
T ss_pred CcCccchhhhCCCCCCCEEECCCC
Confidence 5663233444555555555
No 38
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=1.2e-13 Score=108.54 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=37.2
Q ss_pred eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+.+++++|+++ .+|..+ .++|+.|++++|++++..+..+..+++|++|+|++|++++..+..|.++++|+.|+
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 34555555555 344322 23555555555555544444455555555555555555544444455555555555
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=1.2e-13 Score=115.92 Aligned_cols=127 Identities=16% Similarity=0.056 Sum_probs=100.5
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|++++..|..+. .+++|++|+|++|++++..|..++.+++|++|+|++|++++..|..+..+++|+.
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 368899999999999976666677 8999999999999999887778999999999999999999888888899999999
Q ss_pred cc--CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER--CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~--~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .|.+.......+ +.-..+.+.+|. +++..+..+..+++|+.|+|++
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-------LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCc-------CCccCHHHHhCCcCCCEEEccC
Confidence 99 444432111111 111333445544 5788888899999999999987
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=123.08 Aligned_cols=81 Identities=21% Similarity=0.128 Sum_probs=61.7
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|++++..+..+. ++++|++|+|++|++++..+..|..+++|+.|+|++|.++...+..|.++++|+.
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 367788888888888866666776 7888888888888888666667888888888888888887555556666776666
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 165 L~ 166 (440)
T 3zyj_A 165 LD 166 (440)
T ss_dssp EE
T ss_pred eC
Confidence 66
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=4.7e-14 Score=136.11 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=39.9
Q ss_pred CChhHhhcCCCccEEEccCCcCcc-----------------cCccccc--CCCCCCEEeccCCccCCCcChhhhccccCc
Q 048290 19 IPTWTGESLQNLIVLSLKSNKFHG-----------------NIPYQLC--HLGFIQVLDLSLNIISGKIPKCFNNFSAMT 79 (253)
Q Consensus 19 ~p~~~~~~l~~L~~L~L~~N~l~g-----------------~ip~~~~--~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 79 (253)
+|..++ ++++|++|+|++|+|+| .+|..++ ++++|++|+|++|++.|.+|..|+++++|+
T Consensus 440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 555565 56666666666666666 2666655 666666666666666666666666666666
Q ss_pred ccc
Q 048290 80 YER 82 (253)
Q Consensus 80 ~L~ 82 (253)
.|+
T Consensus 519 ~L~ 521 (876)
T 4ecn_A 519 SLN 521 (876)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=1.6e-13 Score=123.20 Aligned_cols=81 Identities=22% Similarity=0.108 Sum_probs=65.1
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|+.|+|++|++++..|..+. ++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..|.++++|+.
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccCCcChhhcc-CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 367888999999999877777777 7889999999999988766677888888999999888888555556777777766
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 176 L~ 177 (452)
T 3zyi_A 176 LD 177 (452)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.5e-13 Score=106.94 Aligned_cols=78 Identities=26% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCcceEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
.++|+.|++++|+++ +.+|..+. .+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+.++++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 367999999999998 78998887 899999999999999976 78999999999999999999889999999999999
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 100 L~ 101 (168)
T 2ell_A 100 LN 101 (168)
T ss_dssp EE
T ss_pred Ee
Confidence 98
No 44
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.6e-13 Score=107.46 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=84.9
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER- 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~- 82 (253)
..+.+|+++|+++ .+|..+ .++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578999999998 588765 37899999999999988899999999999999999999977777889999999998
Q ss_pred CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+++. +++..+..+..+++|+.|+|++
T Consensus 86 ~~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 86 NDNQ---------------------------LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSSC---------------------------CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCc---------------------------cCEeCHHHhcCCCCCCEEEeCC
Confidence 3332 3666666788899999999876
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=125.99 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=107.1
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|++|++++|.+++ +|..+. .+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+.++++|+.
T Consensus 372 ~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 372 TTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp CSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 6788888888888885 444466 78888888888888887665 46788888888888888888888888888888888
Q ss_pred cc-CC-CCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCC
Q 048290 81 ER-CS-NPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQS 145 (253)
Q Consensus 81 L~-~n-~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~ 145 (253)
|+ .+ .+. .+.+|.. ..+.+.++. +++..|..+..+++|+.||+++ .+|.. ..+..
T Consensus 450 L~l~~n~l~---~~~~p~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 450 LKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp EECTTCEEG---GGEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred EECcCCcCc---cccchhhhhcccCCCEEECCCCc-------cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 88 33 331 1223332 223344444 5778888999999999999987 34432 45566
Q ss_pred CCccccCCcCCCCCcc
Q 048290 146 FNASVYAGNLELCGLP 161 (253)
Q Consensus 146 ~~~~~~~gN~~LCg~~ 161 (253)
+....+.+|+..|.+|
T Consensus 520 L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred CcEEEecCCcccCCCc
Confidence 6777788998888644
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=3.6e-13 Score=112.82 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=98.3
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|++++..+..+. .+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 368899999999999965555666 8999999999999999888888999999999999999999777777999999999
Q ss_pred cc-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ . |.+.......+... ..+.+.+|. +++..+..+..+++|+.|+|++
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-------LKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCc-------CCcCCHHHhccccCCCEEEecC
Confidence 99 4 44432111112211 233444444 5666677788999999999987
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=1.2e-13 Score=128.06 Aligned_cols=152 Identities=17% Similarity=0.055 Sum_probs=113.0
Q ss_pred CCCcceEEECCCCcCccCCChh-HhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCC---cChhhhccc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTW-TGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGK---IPKCFNNFS 76 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~-~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~---ip~~l~~l~ 76 (253)
++++|+.|++++|++++..|.. +. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++. .+..+..++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTT-TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred CCccCCeEECCCCcCCCcccchhhh-CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 3678999999999999876654 66 899999999999999988888899999999999999999873 236788999
Q ss_pred cCcccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCC
Q 048290 77 AMTYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQS 145 (253)
Q Consensus 77 ~L~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~ 145 (253)
+|+.|+ .|.+.......+... ..+.+.+|. +++..|+.+..++.| .|||++ .+|.. ..+..
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-------LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCc-------cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 999998 444432111111111 333455554 688899999999999 999988 23322 34556
Q ss_pred CCccccCCcCCCCCcc
Q 048290 146 FNASVYAGNLELCGLP 161 (253)
Q Consensus 146 ~~~~~~~gN~~LCg~~ 161 (253)
+....+.|||..|.++
T Consensus 549 L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSEEECTTCCEECSGG
T ss_pred CCEEeCCCCCccccCC
Confidence 6677789999988654
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=2.6e-13 Score=108.50 Aligned_cols=75 Identities=9% Similarity=0.072 Sum_probs=49.3
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|++++|.++ .+| .+. .+++|++|++++|.++ .++.+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45667777777776 455 455 5777777777777554 234566677777777777777666666666677777666
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.43 E-value=3.9e-13 Score=120.68 Aligned_cols=79 Identities=22% Similarity=0.100 Sum_probs=73.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|+|++|++++..|..+. ++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4789999999999988888888 899999999999999998889999999999999999999977777899999999999
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=117.62 Aligned_cols=78 Identities=21% Similarity=0.128 Sum_probs=33.3
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcCh--hhhccccCcc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPK--CFNNFSAMTY 80 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~ 80 (253)
++|++|+|++|++++..|..+. ++++|++|+|++|++++..+..++++++|++|+|++|++++ +|. .+.++++|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence 3444444444444433333343 44444444444444443222224444444444444444442 222 3444444444
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 154 L~ 155 (353)
T 2z80_A 154 LR 155 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.42 E-value=3.1e-13 Score=125.22 Aligned_cols=125 Identities=17% Similarity=0.019 Sum_probs=98.7
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|||++|++++..|..+. ++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5789999999999987777887 899999999999999988888999999999999999999988899999999999999
Q ss_pred --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290 83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+.......+... ..+.+.++. +++ .+|..++.+++|+.|||++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNF-------IHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSC-------CCCCCCCGGGGTCTTCCEEECCS
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCc-------ccceechHhHhhcCCCCEEEccC
Confidence 444422111111111 233344443 344 5789999999999999987
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=2.6e-13 Score=118.47 Aligned_cols=119 Identities=15% Similarity=0.032 Sum_probs=91.3
Q ss_pred eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCccccc-CCCCCCEEeccCCccCCCcChhhhccccCcccc--
Q 048290 6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC-HLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-- 82 (253)
Q Consensus 6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~-~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-- 82 (253)
+.+++++|+++ .+|..+. ..++.|+|++|+|++..+..+. .+++|+.|+|++|++++..|..|.++++|+.|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57999999999 6887654 4689999999999988787787 999999999999999987788999999999999
Q ss_pred CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 ~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+.......+... ..+.+.+|. +++..|..+..+++|+.|+|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-------IVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-------ccEECHHHhCCcccCCEEECCC
Confidence 444422111111111 233445554 5677788888899999999987
No 53
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=7.9e-13 Score=103.69 Aligned_cols=105 Identities=18% Similarity=0.104 Sum_probs=87.7
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|++++|++++..+..+. .+++|++|+|++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5799999999999965555666 899999999999999977777789999999999999999987778889999999998
Q ss_pred -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
.++. +++..+..+..+++|+.|+|++
T Consensus 107 l~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 107 LDTNQ---------------------------LKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCc---------------------------ceEeCHHHhcCCcccCEEEecC
Confidence 3322 2555555667788889888864
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=3.8e-13 Score=112.79 Aligned_cols=125 Identities=21% Similarity=0.023 Sum_probs=97.2
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|+|++|++++..+..+. ++++|++|+|++|++++..+..+..+++|++|+|++|.+++..|..|.++++|+.|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3589999999999976666787 899999999999999987778899999999999999999988888999999999998
Q ss_pred --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290 83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+.......+... ..+.+.+|. +++ .+|..+..+++|+.|||++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-------IQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-------CCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-------cceecCchhhccCCCCCEEECCC
Confidence 444422111111111 233444444 344 3688999999999999997
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=5.7e-13 Score=125.17 Aligned_cols=80 Identities=26% Similarity=0.301 Sum_probs=49.0
Q ss_pred CCcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCc--------------------------ccCcccccCCCCC
Q 048290 2 CSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFH--------------------------GNIPYQLCHLGFI 54 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~--------------------------g~ip~~~~~l~~L 54 (253)
+++|+.|+|++|.+++.+| ..+. ++++|++|++++|++. +.+|..+..+++|
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGT-TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCEEeCCCCcCccccCccccc-CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 4556666666666655544 3333 4555555555555543 3445566667777
Q ss_pred CEEeccCCccCCCcChhhhccccCcccc
Q 048290 55 QVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 55 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+.|+|++|++++..|..|.++++|+.|+
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 510 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILD 510 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCCCCcCChhhhccccccCEEe
Confidence 7777777777766666677777777776
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=119.36 Aligned_cols=144 Identities=18% Similarity=0.041 Sum_probs=100.6
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++++.|+|++|++++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4689999999999987778888 899999999999999988889999999999999999999977777899999999999
Q ss_pred -C-CCCCccccccc---ccCCCccccc-ceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccC
Q 048290 83 -C-SNPTIGFAKLI---FVPAGTGYYY-KYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYA 152 (253)
Q Consensus 83 -~-n~~~~~~~~~i---p~~~~l~~~~-~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~ 152 (253)
. |.+.......+ +.-..+.+.+ +. +....+..+..+++|+.|+|++ .+|.-..+..+....+.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKR-------LSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS 215 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTT-------CCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCC-------cceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECC
Confidence 4 44422001011 1112222222 11 2333344567777777777776 44543444444444444
Q ss_pred Cc
Q 048290 153 GN 154 (253)
Q Consensus 153 gN 154 (253)
+|
T Consensus 216 ~N 217 (440)
T 3zyj_A 216 GN 217 (440)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=3e-13 Score=120.99 Aligned_cols=107 Identities=21% Similarity=0.136 Sum_probs=95.1
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|+.|+|++|++++..|..+. ++++|++|+|++|.+++..|..+..+++|+.|||++|++++..|..|.++++|+.
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 368899999999999988888888 8999999999999999888999999999999999999999888999999999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .++. +++..+..+..+++|+.|++++
T Consensus 376 L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 376 LALDTNQ---------------------------LKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp EECCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCc---------------------------cccCCHhHhccCCcccEEEccC
Confidence 98 3332 3555666778899999999987
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=1.4e-13 Score=132.88 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=63.6
Q ss_pred CCcceEEECCCCcCcc-----------------CCChhHh-hcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc
Q 048290 2 CSQLRVLDLGKNAFFG-----------------EIPTWTG-ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI 63 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g-----------------~~p~~~~-~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~ 63 (253)
|++|++|+|++|+++| .+|..++ .++++|++|+|++|++.|.+|..++++++|+.|+|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 6778888888888887 3777642 158888888888888888888888888888888888887
Q ss_pred -cCC-CcChhhhccc-------cCcccc
Q 048290 64 -ISG-KIPKCFNNFS-------AMTYER 82 (253)
Q Consensus 64 -l~g-~ip~~l~~l~-------~L~~L~ 82 (253)
++| .+|..+++++ +|+.|+
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred CcccccchHHHHhhhhcccccCCccEEE
Confidence 887 7887777776 777777
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=1.4e-13 Score=124.95 Aligned_cols=145 Identities=14% Similarity=-0.056 Sum_probs=105.5
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhh-ccccCccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFN-NFSAMTYE 81 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~L 81 (253)
++|+.|+|++|.+++..+ . .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. ++++|+.|
T Consensus 99 ~~L~~L~L~~N~l~~~~~---~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC---S-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp TTCCEEECCSSCCCCEEE---C-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECcCCcCCCCCc---c-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 456777777777775433 2 478899999999999998888999999999999999999998888876 78999999
Q ss_pred c-C-CCCCcccccc--cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCccccC
Q 048290 82 R-C-SNPTIGFAKL--IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVYA 152 (253)
Q Consensus 82 ~-~-n~~~~~~~~~--ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~~ 152 (253)
+ + |.+.. .... ++.-..+.+++|. +++..| .+..++.|+.|||++ .+|.. ..+..+....+.
T Consensus 175 ~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~-------l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 175 NLQYNFIYD-VKGQVVFAKLKTLDLSSNK-------LAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp ECTTSCCCE-EECCCCCTTCCEEECCSSC-------CCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred ecCCCcccc-ccccccCCCCCEEECCCCC-------CCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 8 4 44422 1110 1111334455555 466444 488999999999998 45554 445667777899
Q ss_pred CcCCCCCc
Q 048290 153 GNLELCGL 160 (253)
Q Consensus 153 gN~~LCg~ 160 (253)
+|+..|+.
T Consensus 246 ~N~l~c~~ 253 (487)
T 3oja_A 246 GNGFHCGT 253 (487)
T ss_dssp TCCBCHHH
T ss_pred CCCCcCcc
Confidence 99999864
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=4.7e-13 Score=124.06 Aligned_cols=125 Identities=11% Similarity=-0.085 Sum_probs=94.4
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
..+++|||++|.+++..|..+. ++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|+.|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 4689999999999987788888 899999999999999998899999999999999999999988899999999999999
Q ss_pred -C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 -C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 -~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
. |.+.......+... ..+.+.+|. +++..+..+..+++|+.||+++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNH-------ISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSC-------CCCCCCCTTCCCTTCCEEECCS
T ss_pred ccccCcccCCcchhccCCcccEEECCCCc-------ccccCcccccCCcccCEEEccc
Confidence 4 44422001111111 223344443 3553323333488888888887
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=121.71 Aligned_cols=78 Identities=26% Similarity=0.184 Sum_probs=36.4
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+++.|||++|++++..|..+. ++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 344455555555443344444 444455555555444444444444444444444444444433333344444444444
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=8e-13 Score=122.81 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=60.5
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|.+++..|..++ ++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..|+++++|+.|
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCCCHHHHc-CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 56777788888887766666666 67888888888888875545556778888888888888887777778888888877
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 177 ~ 177 (597)
T 3oja_B 177 Q 177 (597)
T ss_dssp E
T ss_pred E
Confidence 7
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=2.7e-13 Score=115.97 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCcceEEECCCCcCccCCChhH--hhcCCCccEEEccCCcCcccCcccccCC-----CCCCEEeccCCccCCCcChhhhc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWT--GESLQNLIVLSLKSNKFHGNIPYQLCHL-----GFIQVLDLSLNIISGKIPKCFNN 74 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~--~~~l~~L~~L~L~~N~l~g~ip~~~~~l-----~~L~~LdLs~N~l~g~ip~~l~~ 74 (253)
+++|++|+|++|++++.+|..+ . .+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEA-TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSC-CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHh-cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5678888888888887777765 5 688888888888888776 7766666 78888888888888777778888
Q ss_pred cccCcccc
Q 048290 75 FSAMTYER 82 (253)
Q Consensus 75 l~~L~~L~ 82 (253)
+++|+.|+
T Consensus 172 l~~L~~L~ 179 (312)
T 1wwl_A 172 FPALSTLD 179 (312)
T ss_dssp CSSCCEEE
T ss_pred CCCCCEEE
Confidence 88888887
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=9.1e-13 Score=111.79 Aligned_cols=142 Identities=16% Similarity=0.096 Sum_probs=87.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++++.|+|++|++++..|..+. .+++|++|+|++|.+++. |.. +.+++|+.|+|++|+++ .+|..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 3567777777777766566666 677777777777777753 322 67777888888888777 6777777778888777
Q ss_pred --CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290 83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY 151 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~ 151 (253)
.|.+.....+.+... ..+.+.+|. +++..+..+..+++|+.|+|++ .+|.+ ..+..+....+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNE-------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCC-------CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 333322111111111 223344444 4666666677788888888876 45543 23444555555
Q ss_pred CCcC
Q 048290 152 AGNL 155 (253)
Q Consensus 152 ~gN~ 155 (253)
.+|.
T Consensus 180 ~~N~ 183 (290)
T 1p9a_G 180 QENS 183 (290)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5553
No 65
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=4.1e-13 Score=127.60 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=72.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.|+ .+|..|+.|++|++|||++|.|+ .+|..|+++++|+.|
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred CCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 578999999999998 7898888 8999999999999998 88999999999999999999999 889999999999999
Q ss_pred c-CCC
Q 048290 82 R-CSN 85 (253)
Q Consensus 82 ~-~n~ 85 (253)
+ .++
T Consensus 299 ~L~~N 303 (727)
T 4b8c_D 299 YFFDN 303 (727)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 8 444
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=1.3e-13 Score=117.92 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcC-----CCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc--Chhh--
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESL-----QNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI--PKCF-- 72 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l-----~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i--p~~l-- 72 (253)
+++|++|+|++|++++. |..+. .+ ++|++|+|++|++++..|..++.+++|+.|||++|++.|.+ |..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 67899999999999976 87777 66 89999999999998888888999999999999999988763 4444
Q ss_pred hccccCcccc--CCCCCc--cccccc----ccCCCcccccceeeeeEEEeecccc-cccccccceeeeccCC----CCCC
Q 048290 73 NNFSAMTYER--CSNPTI--GFAKLI----FVPAGTGYYYKYLVNLLLTWKGSEN-EYKSTLGLVRCLDLSR----KIPL 139 (253)
Q Consensus 73 ~~l~~L~~L~--~n~~~~--~~~~~i----p~~~~l~~~~~~~~~~~~~l~g~~p-~~~~~l~~L~~LdLS~----~iP~ 139 (253)
..+++|+.|+ .|.+.. .....+ +.-..+.+.+|. +++.+| ..+..++.|+.|||++ .||.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-------LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-------CCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-------CCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 8888999988 444421 000011 111334455554 466554 3455677888888887 4554
Q ss_pred CCCCCCCCccccCCc
Q 048290 140 GTQLQSFNASVYAGN 154 (253)
Q Consensus 140 ~~~l~~~~~~~~~gN 154 (253)
.-. ..+....+.+|
T Consensus 271 ~~~-~~L~~L~Ls~N 284 (312)
T 1wwl_A 271 GLP-AKLSVLDLSYN 284 (312)
T ss_dssp SCC-SEEEEEECCSS
T ss_pred hcc-CCceEEECCCC
Confidence 321 34444445555
No 67
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=7.1e-13 Score=104.13 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=82.2
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-C
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-C 83 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~ 83 (253)
-+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+ .
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367999999997 7887653 7899999999999988888999999999999999999976666788999999988 3
Q ss_pred CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 84 SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 84 n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+|. +++..+..+..+++|+.|+|++
T Consensus 90 ~N~---------------------------l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DNH---------------------------LKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSC---------------------------CCCCCTTTTTTCTTCSEEECCS
T ss_pred CCc---------------------------cceeCHHHhccccCCCEEEeCC
Confidence 322 3555556688888999999876
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=7.1e-13 Score=112.72 Aligned_cols=142 Identities=16% Similarity=0.103 Sum_probs=106.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|++|+|++|.++ .+|..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 678999999999998 5787787 89999999999999997655 57999999999999999999999999999999999
Q ss_pred cc-CCC-CCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCC
Q 048290 81 ER-CSN-PTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQS 145 (253)
Q Consensus 81 L~-~n~-~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~ 145 (253)
|+ .++ +.. ..+|.. ..+.+.++. +++..|..+..+++|+.|+|++ .+|.. ..+..
T Consensus 155 L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 155 LKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp EECTTCEEGG---GEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred EECCCCcccc---ccchhHHhhCcCCCEEECCCCC-------cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 98 433 311 012222 233444444 5677788888889999999987 23321 23445
Q ss_pred CCccccCCcC
Q 048290 146 FNASVYAGNL 155 (253)
Q Consensus 146 ~~~~~~~gN~ 155 (253)
+....+.+|.
T Consensus 225 L~~L~L~~N~ 234 (306)
T 2z66_A 225 LQVLDYSLNH 234 (306)
T ss_dssp CCEEECTTSC
T ss_pred CCEeECCCCC
Confidence 5555566664
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=4e-13 Score=110.41 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCCcceEEECCCCc-CccCCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccC
Q 048290 1 NCSQLRVLDLGKNA-FFGEIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAM 78 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~-l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 78 (253)
++++|++|++++|+ +++..+..+. ++++|++|+|++ |++++..+..|..+++|+.|++++|.+++ +|. +..+++|
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L 129 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFY-NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST 129 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEE-SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcC-CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence 36789999999997 8755555676 899999999998 99997777788999999999999999985 776 8888888
Q ss_pred c---ccc
Q 048290 79 T---YER 82 (253)
Q Consensus 79 ~---~L~ 82 (253)
+ .|+
T Consensus 130 ~~L~~L~ 136 (239)
T 2xwt_C 130 DIFFILE 136 (239)
T ss_dssp CSEEEEE
T ss_pred ccccEEE
Confidence 7 777
No 70
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=120.13 Aligned_cols=149 Identities=18% Similarity=0.030 Sum_probs=109.6
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|.+++..|..+. ++++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|+.
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 468999999999999988898998 8999999999999999766667899999999999999999888999999999999
Q ss_pred cc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290 81 ER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS 149 (253)
Q Consensus 81 L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~ 149 (253)
|+ .|.+.......+... ..+.+.++. +++..+..+..+++|+.|+|++ .++.. ..+..+...
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-------LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCC-------CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCc-------CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 99 444422111111111 223344443 4666667788999999999987 22221 334445555
Q ss_pred ccCCcCCC
Q 048290 150 VYAGNLEL 157 (253)
Q Consensus 150 ~~~gN~~L 157 (253)
.+.+|+.+
T Consensus 206 ~l~~~~~~ 213 (477)
T 2id5_A 206 EISHWPYL 213 (477)
T ss_dssp EEECCTTC
T ss_pred eCCCCccc
Confidence 56665443
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=2.5e-13 Score=105.61 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=85.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc-ChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI-PKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~ 80 (253)
+++|++|+|++|.+++. ..+. .+++|++|+|++|++++.+|..+..+++|++|+|++|.+++.. +..+..+++|+.
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLP-KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCC-CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred CCCCCEEeCcCCCCCCh--hhhc-cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 57899999999999965 6677 8999999999999999888888888999999999999998643 378999999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccc---cccccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSEN---EYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p---~~~~~l~~L~~LdLS~ 135 (253)
|+ .++. +++..+ ..+..+++|+.||+++
T Consensus 125 L~l~~N~---------------------------l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 125 LDLFNCE---------------------------VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EECCSSG---------------------------GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EEeeCCc---------------------------CcchHHHHHHHHHhCccCcEecCCC
Confidence 88 3332 243333 4678889999999875
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=3.7e-12 Score=109.45 Aligned_cols=77 Identities=23% Similarity=0.207 Sum_probs=35.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++..|..+. .+++|++|+|++|+++ .+|..+. ++|+.|++++|.+++..+..+.++++|+.|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 34455555555555544444444 4555555555555444 2332221 233333333333433333445556666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 151 ~ 151 (330)
T 1xku_A 151 E 151 (330)
T ss_dssp E
T ss_pred E
Confidence 5
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=1.5e-12 Score=120.95 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=74.8
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
.+++.|++++|.++...+..+. ++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|+.|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHc-cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 5566777777777643333344 677777777777777766666777777777777777777766666677777777776
Q ss_pred --CCCCCcccccc----cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 --CSNPTIGFAKL----IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 --~n~~~~~~~~~----ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+.. .+.. ++.-..+.+.+|. +++..|..++.+++|+.|+|++
T Consensus 130 L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp CCSSCCCC-CCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTTTCTTCCEEECTT
T ss_pred eeCCCCCC-CCHHHhccCCCCCEEEeeCCc-------CCCCChhhhhcCCcCcEEECcC
Confidence 333321 1111 0110222333333 4666677777777777777776
No 74
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=1.2e-12 Score=102.29 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=72.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|+|++|+|++..|..+. ++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|.++++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 5789999999999987788888 899999999999999987777789999999999999999987777899999999998
No 75
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.6e-12 Score=101.93 Aligned_cols=78 Identities=18% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++.+|+.|++++|+++ .+|. +....++|++|+|++|.+++. ..+..+++|+.|+|++|.+++..|..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3678999999999999 5665 442345999999999999975 68999999999999999999655566799999999
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 93 L~ 94 (176)
T 1a9n_A 93 LI 94 (176)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 76
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.3e-12 Score=120.75 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=87.2
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER- 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~- 82 (253)
.|+.|+|++|++++ +|. ++ .+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .++++++|+.|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 58899999999996 786 87 8999999999999999 889999999999999999999996 77 899999999998
Q ss_pred CCCCCcccccccccCCCcccccceeeeeEEEeeccc-ccccccccceeeeccCC
Q 048290 83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSE-NEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~-p~~~~~l~~L~~LdLS~ 135 (253)
++|. +++.+ |..++.+++|+.|||++
T Consensus 516 s~N~---------------------------l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 516 CNNR---------------------------LQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CSSC---------------------------CCSSSTTGGGGGCTTCCEEECTT
T ss_pred CCCC---------------------------CCCCCCcHHHhcCCCCCEEEecC
Confidence 3332 36666 88899999999999986
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.36 E-value=5.7e-13 Score=121.95 Aligned_cols=79 Identities=28% Similarity=0.240 Sum_probs=64.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|||++|++++..|..+. ++++|++|+|++|++++..|..|+.+++|++|||++|.+++..|..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 4678888888888877777777 788888888888888877777888888888888888888877777788888888887
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=2.9e-12 Score=112.69 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++..|..+. ++++|++|+|++|.++...+..|..+++|++|++++|.+++..|..+..+++|+.|
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhc-CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 56677777777777765566566 67777777777777774333345777777777777777776666677777777777
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 171 ~ 171 (390)
T 3o6n_A 171 Q 171 (390)
T ss_dssp E
T ss_pred E
Confidence 6
No 79
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=113.43 Aligned_cols=121 Identities=20% Similarity=0.137 Sum_probs=90.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|+|++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|||++|++++..+..+.++++|+.|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ-RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhc-cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4799999999999976565787 899999999999999988888999999999999999999965556699999999999
Q ss_pred -C-CCCCccccccccc-C--------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 -C-SNPTIGFAKLIFV-P--------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 -~-n~~~~~~~~~ip~-~--------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
. |.+. .+|. . ..+.+.++. .+.+..+..+..++.|+.|++++
T Consensus 131 L~~n~l~-----~l~~~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 131 LLGNPYK-----TLGETSLFSHLTKLQILRVGNMD------TFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp CTTCCCS-----SSCSSCSCTTCTTCCEEEEEESS------SCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCCCCc-----ccCchhhhccCCCCcEEECCCCc------cccccCHHHccCCCCCCEEECCC
Confidence 4 4442 2332 1 222233320 02344455666666777777665
No 80
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.7e-12 Score=101.95 Aligned_cols=79 Identities=24% Similarity=0.161 Sum_probs=71.8
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|+|++|++++..|..+. ++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 5789999999999987788888 899999999999999986666689999999999999999976666799999999998
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.34 E-value=6.6e-13 Score=121.53 Aligned_cols=107 Identities=19% Similarity=0.133 Sum_probs=80.4
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccCc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAMT 79 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~ 79 (253)
++++|++|+|++|++++..|..+. ++++|++|+|++|++++..|..|+++++|++|+|++|.+++ .+|..++++++|+
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 367788888888888877777777 78888888888888887777778888888888888888876 4567788888888
Q ss_pred ccc--CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 80 YER--CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 80 ~L~--~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
.|+ .|.. +....+..+..+++|+.|++++
T Consensus 127 ~L~L~~n~~---------------------------~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 127 TLRIGNVET---------------------------FSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEEEEESSS---------------------------CCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcc---------------------------ccccCHhhhhcccccCeeeccC
Confidence 877 2222 1222335778888899998876
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=1.2e-12 Score=104.59 Aligned_cols=123 Identities=14% Similarity=0.033 Sum_probs=94.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|++++|.++ .++.+. .+++|++|++++|.+++..|..++.+++|++|+|++|.+++..|..+..+++|+.|
T Consensus 65 l~~L~~L~l~~n~~~--~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT--NYNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CTTCSEEEEESCCCS--CCGGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred CCCCCEEEccCCCCC--cchhhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 678999999999776 344777 89999999999999998889999999999999999999998889999999999999
Q ss_pred c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCCcC
Q 048290 82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAGNL 155 (253)
Q Consensus 82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~gN~ 155 (253)
+ .++. ..+.+| .+..+++|+.|++++ .+|.-..+..+....+.+|+
T Consensus 142 ~L~~n~---------------------------~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 142 DLSYNG---------------------------AITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSCT---------------------------BCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred EccCCC---------------------------CccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 8 3331 012233 466777788888777 34433344555555566664
No 83
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=118.87 Aligned_cols=125 Identities=21% Similarity=0.023 Sum_probs=97.4
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++++.|||++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4689999999999987777887 899999999999999988888899999999999999999987788999999999999
Q ss_pred --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290 83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+.......+..- ..+.+.++. +++ .+|..++.+++|+.||+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-------l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-------IQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSC-------CCCCCCCGGGGGCTTCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCc-------cceecChhhhcccCCCCEEeCcC
Confidence 444422000011111 233344443 355 4688999999999999987
No 84
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=1.9e-12 Score=119.75 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc-ChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI-PKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~ 80 (253)
+++|+.|+|++|+++ .+|..++ ++++|+.|+|++|+|++ +| .++.+++|+.|+|++|++++.+ |..++.+++|+.
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred cccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 678999999999999 8999998 89999999999999997 67 8999999999999999999887 999999999999
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 538 L~ 539 (567)
T 1dce_A 538 LN 539 (567)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.32 E-value=2.8e-12 Score=120.42 Aligned_cols=80 Identities=24% Similarity=0.160 Sum_probs=51.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|||++|.+++..|..+. ++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|+.|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 45666666666666665566665 56666666666666664444456666666666666666665555666666666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 127 ~ 127 (680)
T 1ziw_A 127 D 127 (680)
T ss_dssp E
T ss_pred E
Confidence 6
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=109.79 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=44.3
Q ss_pred CcceEEECCCCcCccCCChhH--hhcCCCccEEEccCCcCcccCc----ccccCCCCCCEEeccCCccCCCcChhhhccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWT--GESLQNLIVLSLKSNKFHGNIP----YQLCHLGFIQVLDLSLNIISGKIPKCFNNFS 76 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~--~~~l~~L~~L~L~~N~l~g~ip----~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 76 (253)
++|++|+|++|++++..|..+ . .+++|++|+|++|.+++..| ..+..+++|++|+|++|.+++..|..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEA-TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSC-CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhc-cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 346666666666666555554 4 45566666666666555433 2234455555555555555555555555555
Q ss_pred cCcccc
Q 048290 77 AMTYER 82 (253)
Q Consensus 77 ~L~~L~ 82 (253)
+|+.|+
T Consensus 170 ~L~~L~ 175 (310)
T 4glp_A 170 ALTSLD 175 (310)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 555555
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=3.7e-12 Score=111.94 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=75.5
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
++++++|++++|.++ .+|..+...+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|+.|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356677777777776 3444432267777777777777776666677777777777777777776666667777777777
Q ss_pred c--CCCCCccccccc----ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R--CSNPTIGFAKLI----FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~--~n~~~~~~~~~i----p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ .|.+.. ....+ +.-..+.+.++. +++..|..+..+++|+.|++++
T Consensus 123 ~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTSSCTTCCEEECCS
T ss_pred ECCCCccCc-CCHHHhcCCCCCcEEECCCCc-------cCccChhhccCCCCCCEEECCC
Confidence 7 333321 11111 100222333333 3555666677777777777776
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=125.70 Aligned_cols=126 Identities=16% Similarity=0.035 Sum_probs=96.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
.++|+.|||++|.+++..|..+. ++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|..|.++++|+.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 36789999999999988888888 8999999999999777777 778999999999999999999888999999999999
Q ss_pred cc--CCCCCccc-----ccccccCCCcccccceeeeeEEEeecccc-cccccccceeeeccCC
Q 048290 81 ER--CSNPTIGF-----AKLIFVPAGTGYYYKYLVNLLLTWKGSEN-EYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~--~n~~~~~~-----~~~ip~~~~l~~~~~~~~~~~~~l~g~~p-~~~~~l~~L~~LdLS~ 135 (253)
|+ .|.+.... .+.++.-..+.+.+|. +++..+ ..++++++|+.|+|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-------IRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-------CCCCCCCGGGGTCSSCCEEEEES
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCc-------ccccccchhHhhCCCCCEEECCC
Confidence 99 44442211 0011111223344443 455544 5789999999999987
No 89
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.3e-12 Score=101.25 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=74.7
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|+|++|+++ .+|..+. ++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 47899999999998 7888888 899999999999999988888899999999999999999988888999999999999
Q ss_pred --CCCC
Q 048290 83 --CSNP 86 (253)
Q Consensus 83 --~n~~ 86 (253)
.|.+
T Consensus 109 L~~N~l 114 (193)
T 2wfh_A 109 LHGNDI 114 (193)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 4444
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=6.9e-12 Score=107.77 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=87.9
Q ss_pred CCCcceEEECCCCcCcc--CCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccC
Q 048290 1 NCSQLRVLDLGKNAFFG--EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAM 78 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g--~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 78 (253)
++++|+.|++++|.++. ..+..+. ++++|++|++++|.++. +|..+. ++|+.|++++|.+++..|..+..+++|
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred CCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 36789999999999963 6777787 89999999999999984 666554 789999999999998888889999999
Q ss_pred cccc-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 79 TYER-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 79 ~~L~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+.|+ + |.+.......+... ..+.+.+|. ++ .+|..+..++.|+.||+++
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-------LV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-------CS-SCCTTTTTCSSCCEEECCS
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCc-------Cc-cCChhhccCCCcCEEECCC
Confidence 9988 3 43322111111111 223344443 23 6677777888888888876
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.5e-12 Score=116.82 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=56.5
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI 68 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i 68 (253)
+++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++.+| ++.+++|++|||++|.+++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC
Confidence 35899999999999987778888 89999999999999998766 899999999999999988543
No 92
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=4.4e-12 Score=109.74 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=65.4
Q ss_pred EEECCCC-cCccCCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 7 VLDLGKN-AFFGEIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 7 ~L~Ls~N-~l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
.++++++ +++ .+|. +. .+++|+.|+|++ |+|++..|..|+.|++|+.|+|++|+|++..|..|.++++|+.|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 5688888 898 5888 87 899999999996 999988888899999999999999999988888999999999998
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=1.5e-11 Score=105.84 Aligned_cols=78 Identities=21% Similarity=0.138 Sum_probs=62.3
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|++|+|++|++++..|..+. ++++|++|+|++|+++ .+|..+. ++|++|++++|.+++..+..|.++++|+.
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred CCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 367889999999999877788887 7999999999999887 5666554 67888888888887666666777888877
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 152 L~ 153 (332)
T 2ft3_A 152 IE 153 (332)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=117.04 Aligned_cols=75 Identities=19% Similarity=0.075 Sum_probs=40.2
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+|++|||++|++++..|..+. ++++|++|+|++|++++..|..|+++++|++|||++|+++ .+|.. .+++|++|+
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred cccEEECCCCcccccChhhcc-ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 455555555555544444454 4555555555555555555555555555555555555555 34443 455555555
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=2.2e-12 Score=110.50 Aligned_cols=145 Identities=15% Similarity=-0.032 Sum_probs=100.7
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhh-hccccCccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF-NNFSAMTYE 81 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L 81 (253)
++|+.|++++|++++..+. .+++|+.|+|++|++++..|..++.+++|++|+|++|.+++..|..+ ..+++|+.|
T Consensus 99 ~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 4566777777777653332 46789999999999998778888899999999999999998777766 478899998
Q ss_pred c-CCCCCcccccc--cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCccccCC
Q 048290 82 R-CSNPTIGFAKL--IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVYAG 153 (253)
Q Consensus 82 ~-~n~~~~~~~~~--ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~~g 153 (253)
+ +++......+. ++.-..+.+.+|. +++ +|..+..+++|+.|||++ .+|.. ..+..+....+.+
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~-------l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNK-------LAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSC-------CCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred ECCCCcCcccccccccccCCEEECCCCc-------CCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 8 43332211111 1111334455554 344 444588899999999998 45543 3456667777889
Q ss_pred cCCCCC
Q 048290 154 NLELCG 159 (253)
Q Consensus 154 N~~LCg 159 (253)
|+..|+
T Consensus 247 N~~~~~ 252 (317)
T 3o53_A 247 NGFHCG 252 (317)
T ss_dssp CCCBHH
T ss_pred CCccCc
Confidence 988875
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.28 E-value=1e-11 Score=105.22 Aligned_cols=137 Identities=18% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|+|++|++++ ++. +. .+++|++|+|++|.+++ + +.+..+++|+.|+|++|++++. ..+..+++|+.|
T Consensus 67 l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 4566666666666664 333 54 56666677776666664 2 2366666777777777766642 346666666666
Q ss_pred c-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccC
Q 048290 82 R-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYA 152 (253)
Q Consensus 82 ~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~ 152 (253)
+ + |.+.. . ..+... ..+.+.+|. +++..+ +..++.|+.|+|++ .+|.-..+..+....+.
T Consensus 140 ~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~-------l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 140 YLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-------ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp ECCSSCCCC-C-GGGGGCTTCSEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred EccCCcCCc-c-hhhccCCCCCEEEccCCc-------cccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence 6 3 33221 1 111111 222333333 344443 67777778888776 33333344455555566
Q ss_pred CcCC
Q 048290 153 GNLE 156 (253)
Q Consensus 153 gN~~ 156 (253)
+|+.
T Consensus 209 ~n~i 212 (291)
T 1h6t_A 209 SQEC 212 (291)
T ss_dssp EEEE
T ss_pred CCcc
Confidence 6643
No 97
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=2.4e-12 Score=101.00 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=81.9
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcCh--hhhccccCcc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPK--CFNNFSAMTY 80 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~ 80 (253)
++|++|||++|++++. ..+. .+++|++|+|++|++++..|..+..+++|++|+|++|.++ .+|. .+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence 4899999999999964 4677 8999999999999999765555699999999999999996 6776 8899999999
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccc----cccccceeeeccCC
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEY----KSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~----~~~l~~L~~LdLS~ 135 (253)
|+ .++. ++ .+|.. +..++.|+.||++.
T Consensus 118 L~l~~N~---------------------------i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 118 LCILRNP---------------------------VT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECCSSG---------------------------GG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred EEecCCC---------------------------CC-CcHhHHHHHHHHCCccceeCCCc
Confidence 88 3332 12 23443 77889999999875
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.26 E-value=4.6e-12 Score=108.55 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|||++|++++..|..+. .+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|+.|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 46899999999999987777887 89999999999999997655 899999999999999998433 22566666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 105 ~ 105 (317)
T 3o53_A 105 H 105 (317)
T ss_dssp E
T ss_pred E
Confidence 5
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.25 E-value=3.8e-11 Score=103.25 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC--CCcChhhhcc----
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS--GKIPKCFNNF---- 75 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~--g~ip~~l~~l---- 75 (253)
+++|++|+|++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.++ +..|..+..+
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSC
T ss_pred cCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCE
Confidence 566777777777776 5555432 56666666666666554555666666666666666664 2445555444
Q ss_pred ----------------ccCcccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccC
Q 048290 76 ----------------SAMTYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLS 134 (253)
Q Consensus 76 ----------------~~L~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS 134 (253)
++|+.|+ .|.+.......+... ..+.+.+|. +++..+..+..+++|+.|||+
T Consensus 177 L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-------IRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-------CCCCCTTGGGGCTTCCEEECC
T ss_pred EECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-------CCcCChhHhhCCCCCCEEECC
Confidence 2333333 111111000111111 233444444 466666677777778888877
Q ss_pred C----CCCCC-CCCCCCCccccCCcC
Q 048290 135 R----KIPLG-TQLQSFNASVYAGNL 155 (253)
Q Consensus 135 ~----~iP~~-~~l~~~~~~~~~gN~ 155 (253)
+ .+|.. ..+..+....+.+|.
T Consensus 250 ~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 250 NNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCcCeecChhhhcCccCCEEECCCCC
Confidence 6 45543 334445555555554
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.25 E-value=7.8e-12 Score=115.11 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=68.6
Q ss_pred ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc--
Q 048290 5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-- 82 (253)
Q Consensus 5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-- 82 (253)
.+++|+++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 33 ~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 356677777766 3665432 5666777777776665566666667777777777776666666666666666666
Q ss_pred CCCCCcccccccccC-----CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290 83 CSNPTIGFAKLIFVP-----AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 ~n~~~~~~~~~ip~~-----~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+. .+|.. ..+.+.+|. +++ .+|..++++++|+.|||++
T Consensus 109 ~N~l~-----~lp~~~l~~L~~L~Ls~N~-------l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 109 HNRLQ-----NISCCPMASLRHLDLSFND-------FDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp TSCCC-----EECSCCCTTCSEEECCSSC-------CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred CCcCC-----ccCccccccCCEEECCCCC-------ccccCchHhhcccCcccEEecCC
Confidence 33332 23322 222333333 344 3456777777777777776
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=4.7e-12 Score=103.96 Aligned_cols=142 Identities=9% Similarity=-0.008 Sum_probs=103.5
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCc-CcccCcccccCCCCCCEEeccC-CccCCCcChhhhccccCcc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNK-FHGNIPYQLCHLGFIQVLDLSL-NIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g~ip~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~ 80 (253)
.+|+.|+|++|++++..+..+. ++++|++|++++|. +++..+..|.++++|++|++++ |++++..|..|.++++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4789999999999976666787 89999999999997 8876677899999999999999 9999766788999999999
Q ss_pred cc--CCCCCcccccccccC------C---Ccccccc-eeeeeEEEeeccccccccccccee-eeccCC----CCCCCC-C
Q 048290 81 ER--CSNPTIGFAKLIFVP------A---GTGYYYK-YLVNLLLTWKGSENEYKSTLGLVR-CLDLSR----KIPLGT-Q 142 (253)
Q Consensus 81 L~--~n~~~~~~~~~ip~~------~---~l~~~~~-~~~~~~~~l~g~~p~~~~~l~~L~-~LdLS~----~iP~~~-~ 142 (253)
|+ .|.+.. +|.. . .+.+.+| . +++..+..+..++.|+ .|++++ .||... .
T Consensus 110 L~l~~n~l~~-----lp~~~~l~~L~~L~~L~l~~N~~-------l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 110 LGIFNTGLKM-----FPDLTKVYSTDIFFILEITDNPY-------MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp EEEEEECCCS-----CCCCTTCCBCCSEEEEEEESCTT-------CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred EeCCCCCCcc-----ccccccccccccccEEECCCCcc-------hhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 99 444422 3321 1 2233333 2 4566666788999999 999987 344431 1
Q ss_pred CCCCCccccCCcCCC
Q 048290 143 LQSFNASVYAGNLEL 157 (253)
Q Consensus 143 l~~~~~~~~~gN~~L 157 (253)
...+....+.+|+.+
T Consensus 178 ~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYL 192 (239)
T ss_dssp TCEEEEEECTTCTTC
T ss_pred CCCCCEEEcCCCCCc
Confidence 123444446666433
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=2.3e-11 Score=113.27 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=88.0
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
|++|+.|+|++|++++ +|+ +. .+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + ..+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~~-~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD-IKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCCC-CGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCCC-Chh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 6788888888888885 443 66 78888888888888875 33 68888888888888888875 3 357888888888
Q ss_pred c-CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCC
Q 048290 82 R-CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAG 153 (253)
Q Consensus 82 ~-~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~g 153 (253)
+ +++..... ..+... ..+.+.+|. +++..| +..++.|+.|||++ .+|.-..+..+....+.+
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-------l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQ-------ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCCc-------CCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence 8 33322211 111111 233344443 455555 67778888888876 233333444555555555
Q ss_pred cC
Q 048290 154 NL 155 (253)
Q Consensus 154 N~ 155 (253)
|+
T Consensus 207 N~ 208 (605)
T 1m9s_A 207 QE 208 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=9.1e-12 Score=94.74 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCC-cChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGK-IPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~ 80 (253)
+++|++|++++|.+++. ..+. .+++|++|+|++|.+++.+|..+..+++|+.|++++|.+++. .|..+..+++|+.
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLP-KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCC-CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred cCCCcEEECcCCCCCCc--hhhh-cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 57888999999988864 5666 788899999999999887888888888899999999988863 4477888888888
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
|+
T Consensus 118 L~ 119 (149)
T 2je0_A 118 LD 119 (149)
T ss_dssp EE
T ss_pred Ee
Confidence 88
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=7.8e-12 Score=106.70 Aligned_cols=144 Identities=17% Similarity=0.079 Sum_probs=104.9
Q ss_pred CCcceEEECCCCcCccCCC----hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCC--cC--hhhh
Q 048290 2 CSQLRVLDLGKNAFFGEIP----TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGK--IP--KCFN 73 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p----~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~--ip--~~l~ 73 (253)
+++|++|+|++|++++..| ..+. .+++|++|+|++|.+++..|..++.+++|++|||++|++.+. ++ ..++
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 6789999999999998766 3345 699999999999999988889999999999999999998763 32 3357
Q ss_pred ccccCcccc--CCCCCccccc-------ccccCCCcccccceeeeeEEEeecccccccccc---cceeeeccCC----CC
Q 048290 74 NFSAMTYER--CSNPTIGFAK-------LIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTL---GLVRCLDLSR----KI 137 (253)
Q Consensus 74 ~l~~L~~L~--~n~~~~~~~~-------~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l---~~L~~LdLS~----~i 137 (253)
.+++|++|+ .|.+.. ... .++.-..+.+++|. +++.+|..+..+ ++|+.|||++ .+
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l 266 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNS-------LRATVNPSAPRCMWSSALNSLNLSFAGLEQV 266 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSC-------CCCCCCSCCSSCCCCTTCCCEECCSSCCCSC
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCC-------CCccchhhHHhccCcCcCCEEECCCCCCCch
Confidence 899999999 444421 111 11222455666665 577777777766 5899999987 56
Q ss_pred CCCCCCCCCCccccCCcC
Q 048290 138 PLGTQLQSFNASVYAGNL 155 (253)
Q Consensus 138 P~~~~l~~~~~~~~~gN~ 155 (253)
|..- +..+....+.+|.
T Consensus 267 p~~~-~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 267 PKGL-PAKLRVLDLSSNR 283 (310)
T ss_dssp CSCC-CSCCSCEECCSCC
T ss_pred hhhh-cCCCCEEECCCCc
Confidence 6542 2455555566663
No 105
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1e-11 Score=107.46 Aligned_cols=83 Identities=14% Similarity=0.024 Sum_probs=72.4
Q ss_pred CCcceEEECCC-CcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+++|+.|+|++ |+|++..|..|. ++++|+.|+|++|+|++..|..|.+|++|+.|||++|+|++..|..|..++ |+.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred CCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence 56799999996 999977777888 899999999999999999999999999999999999999976666676666 888
Q ss_pred cc--CCCC
Q 048290 81 ER--CSNP 86 (253)
Q Consensus 81 L~--~n~~ 86 (253)
|+ .|.+
T Consensus 108 l~l~~N~~ 115 (347)
T 2ifg_A 108 LVLSGNPL 115 (347)
T ss_dssp EECCSSCC
T ss_pred EEeeCCCc
Confidence 88 4444
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=3.8e-11 Score=102.54 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++ ++. +. .+++|++|+|++|.+++. | .+..+++|+.|+|++|.+++ +|. +..+++|+.|
T Consensus 62 l~~L~~L~L~~n~i~~-~~~-~~-~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAP-LK-NLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GT-TCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCC-Chh-Hc-cCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence 4566677777776663 343 55 566666666666666642 2 46666666666666666664 232 5566666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 135 ~ 135 (308)
T 1h6u_A 135 Y 135 (308)
T ss_dssp E
T ss_pred E
Confidence 5
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=4.7e-11 Score=101.97 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=41.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++ +| .+. .+++|+.|+|++|++++ +|. +..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 156 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIA-GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGT-TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCC-ch-hhc-CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEE
Confidence 4556666666666653 33 344 56666666666666654 222 5566666666666666654332 5555666665
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 157 ~ 157 (308)
T 1h6u_A 157 S 157 (308)
T ss_dssp E
T ss_pred E
Confidence 5
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=2e-11 Score=115.99 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=73.0
Q ss_pred ceEEECCCCcCcc---------CCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhcc
Q 048290 5 LRVLDLGKNAFFG---------EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNF 75 (253)
Q Consensus 5 L~~L~Ls~N~l~g---------~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 75 (253)
|+.++|+.|.+++ ..|..+. .++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKY-DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred hhcCccCcccccCccccccceecChhhhc-cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 4455666655544 3466676 8999999999999998 78888889999999999999999 999999999
Q ss_pred ccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 76 SAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 76 ~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
++|+.|+ .|.+. .+|.. ..+.+.+|. .+.+|..++.+++|+.|||++
T Consensus 270 ~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~--------l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-----SLPAELGSCFQLKYFYFFDNM--------VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TTCCEEECTTSCCS-----SCCSSGGGGTTCSEEECCSSC--------CCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCEEeCcCCcCC-----ccChhhcCCCCCCEEECCCCC--------CCccChhhhcCCCccEEeCCC
Confidence 9999999 44442 23332 122333333 235666677777777777765
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.18 E-value=5.4e-11 Score=102.65 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=93.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|++++|.+++. +. +. .+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|
T Consensus 198 l~~L~~L~l~~n~l~~~-~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDI-TP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCccceeecccCCCCCC-ch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 57889999999999854 33 66 78999999999999986433 88899999999999988853 468888888888
Q ss_pred c--CCCCCcc-cccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCCc
Q 048290 82 R--CSNPTIG-FAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAGN 154 (253)
Q Consensus 82 ~--~n~~~~~-~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~gN 154 (253)
+ .|.+... ....++.-..+.+.++. +++..|..+..+++|+.|++++ .+|.-..+..+....+.+|
T Consensus 271 ~l~~n~l~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 271 NVGSNQISDISVLNNLSQLNSLFLNNNQ-------LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSC-------CCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred EccCCccCCChhhcCCCCCCEEECcCCc-------CCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 8 3333220 00111111333444444 5777788888888899998887 2222234445555555555
Q ss_pred C
Q 048290 155 L 155 (253)
Q Consensus 155 ~ 155 (253)
+
T Consensus 344 ~ 344 (347)
T 4fmz_A 344 V 344 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=8.7e-11 Score=98.10 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=90.4
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|++++|+++ .+| .+. .+++|+.|+|++|++++..| +..+++|+.|+|++|++++ +|.. .. ++|+.|
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEE
T ss_pred cCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEE
Confidence 467889999999988 566 576 78999999999999986544 8889999999999999885 4432 22 778888
Q ss_pred c--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccC
Q 048290 82 R--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYA 152 (253)
Q Consensus 82 ~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~ 152 (253)
+ .|.+.. .. .+... ..+.+.+|. +++. + .+..++.|+.|||++ .++.-..+..+....+.
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~-------i~~~-~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNK-------LKSI-V-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSC-------CCBC-G-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCc-------CCCC-h-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCC
Confidence 7 343322 11 11111 233444444 3443 3 577888899999987 22222344555555667
Q ss_pred CcCCCC
Q 048290 153 GNLELC 158 (253)
Q Consensus 153 gN~~LC 158 (253)
+|+.-|
T Consensus 181 ~N~~~~ 186 (263)
T 1xeu_A 181 GQKCVN 186 (263)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 776444
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=2.1e-10 Score=97.10 Aligned_cols=137 Identities=14% Similarity=0.057 Sum_probs=97.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|++++|.++. +|. +. .+++|++|+|++|++++..+ +..+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus 45 l~~L~~L~l~~~~i~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCC-CTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred cCcccEEEccCCCccc-Chh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 4679999999999984 554 76 79999999999999997544 9999999999999999985 44 49999999999
Q ss_pred c--CCCCCcccc--cccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCC
Q 048290 82 R--CSNPTIGFA--KLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAG 153 (253)
Q Consensus 82 ~--~n~~~~~~~--~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~g 153 (253)
+ .|.+.. .. ..++.-..+.+.+|. +++. ..+..+++|+.|||++ .+|.-..+..+....+.+
T Consensus 118 ~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-------l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 118 SLEHNGISD-INGLVHLPQLESLYLGNNK-------ITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187 (291)
T ss_dssp ECTTSCCCC-CGGGGGCTTCCEEECCSSC-------CCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ECCCCcCCC-ChhhcCCCCCCEEEccCCc-------CCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCC
Confidence 9 444422 10 111111333444444 3443 5678899999999997 333233455555555666
Q ss_pred cC
Q 048290 154 NL 155 (253)
Q Consensus 154 N~ 155 (253)
|.
T Consensus 188 N~ 189 (291)
T 1h6t_A 188 NH 189 (291)
T ss_dssp SC
T ss_pred Cc
Confidence 63
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.12 E-value=1.3e-10 Score=107.46 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=23.8
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 65 (253)
++|+.|+|++|+|++ +|. +. + +|++|+|++|+|++ +|. .+++|+.|+|++|.++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LP-A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC-T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCCCCC-cch-hh-c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 344444444444443 443 32 1 44444444444443 333 3444444444444444
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=4.4e-12 Score=101.35 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=61.6
Q ss_pred CcceEEECCCCcCccCCCh------hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccc
Q 048290 3 SQLRVLDLGKNAFFGEIPT------WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFS 76 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~------~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 76 (253)
..++.++++.+.++|.+|. .+. .+++|++|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 4567778888888887776 777 78888888888888886 66 7888888888888888888 6787777788
Q ss_pred cCcccc
Q 048290 77 AMTYER 82 (253)
Q Consensus 77 ~L~~L~ 82 (253)
+|+.|+
T Consensus 94 ~L~~L~ 99 (198)
T 1ds9_A 94 TLEELW 99 (198)
T ss_dssp HCSEEE
T ss_pred cCCEEE
Confidence 888887
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.11 E-value=1.8e-10 Score=99.27 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=82.8
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|++++|++++ +|. +. .+++|++|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|
T Consensus 220 ~~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 292 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-LSP-LA-NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCcCCEEEccCCccCC-Ccc-hh-cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence 5788899999998885 444 66 788999999999988763 4688888899999998888854 357888888888
Q ss_pred c--CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R--CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~--~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ .|.+.......+ +.-..+.+.+|. +++..| +..++.|+.||+++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-------ITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSS-------CCCCGG--GGGCTTCSEESSSC
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCc-------cccccC--hhhhhccceeehhh
Confidence 8 344422111111 111333445544 466666 78899999999986
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.09 E-value=3.1e-10 Score=102.09 Aligned_cols=73 Identities=29% Similarity=0.394 Sum_probs=33.4
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|++++|.+++..| +. .+++|+.|++++|.+++..| +..+++|+.|+|++|++++..| +..+++|+.|+
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 344444444444443222 33 44445555555554443222 4445555555555555543332 44555555555
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.08 E-value=5e-10 Score=100.80 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++||+++|.+++ +| .+. .+++|++|+|++|++++. | ++.+++|++|+|++|.+++. | ++++++|+.|
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCccc-Ch-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 4566667777776664 34 455 566666666666666653 3 56666666666666666643 3 5556666665
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 112 ~ 112 (457)
T 3bz5_A 112 N 112 (457)
T ss_dssp E
T ss_pred E
Confidence 5
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.07 E-value=4.4e-10 Score=101.12 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=69.6
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|++|++++|++++ +| .+. ++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|+.|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 467777777777774 66 466 67778888888887775 55433 477777888887775 56 577888888877
Q ss_pred --CCCCCcccccccccC-CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 83 --CSNPTIGFAKLIFVP-AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 83 --~n~~~~~~~~~ip~~-~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
.|.+.. .. .++.. ..+.+.++. ++ .+|. ++.++.|+.|++++
T Consensus 202 l~~N~l~~-l~-~~~~~L~~L~l~~n~-------l~-~lp~-~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 202 ADNNSLKK-LP-DLPLSLESIVAGNNI-------LE-ELPE-LQNLPFLTTIYADN 246 (454)
T ss_dssp CCSSCCSS-CC-CCCTTCCEEECCSSC-------CS-SCCC-CTTCTTCCEEECCS
T ss_pred CCCCcCCc-CC-CCcCcccEEECcCCc-------CC-cccc-cCCCCCCCEEECCC
Confidence 333321 11 11111 333344443 23 4553 66677777777766
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=4.3e-10 Score=104.64 Aligned_cols=118 Identities=17% Similarity=0.053 Sum_probs=85.0
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
|++|+.|+|++|.+++ +| .+. .+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 158 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred CCCCCEEECcCCCCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence 6789999999999985 45 576 799999999999999863 4688899999999999999865 578889999998
Q ss_pred c--CCCCCcccc-cccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R--CSNPTIGFA-KLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~--~n~~~~~~~-~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ .|.+..... ..++.-..+.+.+|. +++. ..+..++.|+.|+|++
T Consensus 159 ~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-------i~~l--~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 159 SLEDNQISDIVPLAGLTKLQNLYLSKNH-------ISDL--RALAGLKNLDVLELFS 206 (605)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSC-------CCBC--GGGTTCTTCSEEECCS
T ss_pred ECcCCcCCCchhhccCCCCCEEECcCCC-------CCCC--hHHccCCCCCEEEccC
Confidence 8 344422111 011111333444444 3443 3578899999999998
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.06 E-value=3.8e-10 Score=101.52 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=83.8
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
++++|+.|++++|++++ +|. +. .+++|+.|+|++|++++..| +..+++|+.|+|++|++++..| +..+++|+.
T Consensus 263 ~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 263 GLTKLTELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred cCCCCCEEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 36889999999999996 444 66 79999999999999997544 8899999999999999998776 789999999
Q ss_pred cc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 81 ER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 81 L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
|+ .|.+.. . ..+... ..+.+.+|. +++..| +..++.|+.|++++
T Consensus 336 L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~-------l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 336 LFFYNNKVSD-V-SSLANLTNINWLSAGHNQ-------ISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp EECCSSCCCC-C-GGGTTCTTCCEEECCSSC-------CCBCGG--GTTCTTCCEEECCC
T ss_pred eECCCCccCC-c-hhhccCCCCCEEeCCCCc-------cCccch--hhcCCCCCEEeccC
Confidence 98 343322 1 011111 222333333 355555 56667777777765
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=3.8e-10 Score=94.22 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=84.1
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|+.|+|++|++++ +|. +. .+++|+.|+|++|++++ +|.. .. ++|+.|+|++|++++ +| .+..+++|+.|
T Consensus 62 l~~L~~L~L~~N~i~~-~~~-l~-~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD-LSP-LK-DLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GT-TCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCC-Chh-hc-cCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEE
Confidence 6789999999999995 555 77 89999999999999986 4433 33 899999999999985 34 58899999999
Q ss_pred c-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 R-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+ + |.+.. .. .+... ..+.+.+|. +++. ..+..++.|+.||+++
T Consensus 134 ~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~-------i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 134 SIRNNKLKS-IV-MLGFLSKLEVLDLHGNE-------ITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp ECTTSCCCB-CG-GGGGCTTCCEEECTTSC-------CCBC--TTSTTCCCCCEEEEEE
T ss_pred ECCCCcCCC-Ch-HHccCCCCCEEECCCCc-------Ccch--HHhccCCCCCEEeCCC
Confidence 8 4 44422 11 11111 333455554 3554 6678899999999987
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=6.1e-12 Score=100.51 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=83.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++ +| .+. .+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 6789999999999996 78 787 8999999999999998 688888888999999999999996 66 68999999998
Q ss_pred cCCCCCcccccccccCCCcccccceeeeeEEEeecccc-cccccccceeeeccCC
Q 048290 82 RCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSEN-EYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p-~~~~~l~~L~~LdLS~ 135 (253)
+ +.+|. +++..+ ..+..+++|+.|++++
T Consensus 121 ~-------------------l~~N~-------i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 121 Y-------------------MSNNK-------ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp E-------------------ESEEE-------CCCHHHHHHHTTTTTCSEEEECS
T ss_pred E-------------------CCCCc-------CCchhHHHHHhcCCCCCEEEecC
Confidence 8 22221 233222 4677889999999986
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.05 E-value=3.4e-11 Score=103.39 Aligned_cols=80 Identities=16% Similarity=0.078 Sum_probs=50.0
Q ss_pred CCcceEEECCCCcCccC-CChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCC-ccCCC-cChhhhccccC
Q 048290 2 CSQLRVLDLGKNAFFGE-IPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN-IISGK-IPKCFNNFSAM 78 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~-~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~~L 78 (253)
+++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++..|..++.+++|+.|+|++| .+++. +|..+.++++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 45566666666666544 555555 5666666666666666666666666666666666666 45542 55556666666
Q ss_pred cccc
Q 048290 79 TYER 82 (253)
Q Consensus 79 ~~L~ 82 (253)
+.|+
T Consensus 171 ~~L~ 174 (336)
T 2ast_B 171 DELN 174 (336)
T ss_dssp CEEE
T ss_pred CEEc
Confidence 6666
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=7.5e-10 Score=102.29 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=42.7
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++|+.|+|++|+|+ .+| . .+++|++|+|++|+|++ +|. +.. +|+.|+|++|++++ +|. .+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~-~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---E-LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---C-CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc---c-ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 34666666666666 455 2 45667777777777765 555 544 67777777777775 555 456666666
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.02 E-value=4.6e-11 Score=107.49 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=32.6
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCC-------------CEEeccCCccCC
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFI-------------QVLDLSLNIISG 66 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L-------------~~LdLs~N~l~g 66 (253)
.+.|+.|++++|++ |.+|..++ ++++|++|++++|.++|.+|..++.+++| +.|++++|.+++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 36789999999999 79999998 89999999999999999999998887754 667777777664
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.01 E-value=1.4e-09 Score=97.94 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=50.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+++|++|+|++|++++ +| ++ ++++|++|+|++|++++ +| ++.+++|++|++++|++++ +| ++++++|+.|
T Consensus 84 l~~L~~L~Ls~N~l~~-~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L 153 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTN-LD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTEL 153 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEE
T ss_pred CCCCCEEECcCCCCce-ee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEE
Confidence 5677888888888875 44 55 67888888888888876 33 7777778888888887776 33 5566666666
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
+
T Consensus 154 ~ 154 (457)
T 3bz5_A 154 D 154 (457)
T ss_dssp E
T ss_pred E
Confidence 5
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.96 E-value=2.2e-10 Score=98.29 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCC-cCccc-CcccccCCCCCCEEeccCC-ccCCC-cChhhhccc-
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN-KFHGN-IPYQLCHLGFIQVLDLSLN-IISGK-IPKCFNNFS- 76 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~-ip~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~- 76 (253)
+++|++|+|++|.+++..|..+. .+++|++|+|++| .+++. +|..+..+++|+.|++++| .+++. +|..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 57788888888888877777777 6888888888888 67653 5666777888888888888 77754 567777777
Q ss_pred cCcccc
Q 048290 77 AMTYER 82 (253)
Q Consensus 77 ~L~~L~ 82 (253)
+|+.|+
T Consensus 196 ~L~~L~ 201 (336)
T 2ast_B 196 TITQLN 201 (336)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 888877
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.96 E-value=1.5e-10 Score=101.59 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=40.2
Q ss_pred CCcceEEECCCC---cCccCCChhH-------hhcCCCccEEEccCCcCcc----cCcccccCCCCCCEEeccCCccCCC
Q 048290 2 CSQLRVLDLGKN---AFFGEIPTWT-------GESLQNLIVLSLKSNKFHG----NIPYQLCHLGFIQVLDLSLNIISGK 67 (253)
Q Consensus 2 l~~L~~L~Ls~N---~l~g~~p~~~-------~~~l~~L~~L~L~~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~ 67 (253)
+++|++|+|++| ++++.+|..+ . .+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++.
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT-TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHh-hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 456667777663 4444555544 3 56667777777777665 3555666666666777766666533
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.94 E-value=9.3e-10 Score=95.44 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=58.7
Q ss_pred CcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcc-cccCCCCCCE-EeccCCccCCCcChhhhccccCc
Q 048290 3 SQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQV-LDLSLNIISGKIPKCFNNFSAMT 79 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~L~~-LdLs~N~l~g~ip~~l~~l~~L~ 79 (253)
++++.|+|++|+|+. +|. .|. ++++|++|+|++|++.+.+|. .|.++++++. ++++.|+++...|..|.++++|+
T Consensus 30 ~~l~~L~Ls~N~i~~-i~~~~f~-~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV-IQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSE-ECTTSST-TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCC-cCHHHHc-CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 468888899998884 554 566 788899999988888766654 4677777664 56667888766677788888888
Q ss_pred ccc
Q 048290 80 YER 82 (253)
Q Consensus 80 ~L~ 82 (253)
.|+
T Consensus 108 ~L~ 110 (350)
T 4ay9_X 108 YLL 110 (350)
T ss_dssp EEE
T ss_pred ccc
Confidence 777
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.91 E-value=2.5e-10 Score=100.14 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=90.7
Q ss_pred CcceEEECCCCcCc-cCCC---hhHhhcCCCccEEEccCCcCc--c---cCcccccCCCCCCEEeccCCccC----CCcC
Q 048290 3 SQLRVLDLGKNAFF-GEIP---TWTGESLQNLIVLSLKSNKFH--G---NIPYQLCHLGFIQVLDLSLNIIS----GKIP 69 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~-g~~p---~~~~~~l~~L~~L~L~~N~l~--g---~ip~~~~~l~~L~~LdLs~N~l~----g~ip 69 (253)
++|++|+|++|+++ +.+| ..+. .+++|+.|+|++|+++ | .+|..+..+++|+.|+|++|.++ +.+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 78999999999998 4455 4566 7999999999999998 3 34558889999999999999996 6788
Q ss_pred hhhhccccCcccc--CCCCCcc----ccccc-----ccCCCcccccceeeeeEEEeec----cccccc-ccccceeeecc
Q 048290 70 KCFNNFSAMTYER--CSNPTIG----FAKLI-----FVPAGTGYYYKYLVNLLLTWKG----SENEYK-STLGLVRCLDL 133 (253)
Q Consensus 70 ~~l~~l~~L~~L~--~n~~~~~----~~~~i-----p~~~~l~~~~~~~~~~~~~l~g----~~p~~~-~~l~~L~~LdL 133 (253)
..+..+++|+.|+ .|.+... +...+ +.-..+.+.+|. +++ .+|..+ .++++|+.|+|
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-------i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-------IELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-------CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-------CCHHHHHHHHHHHHhcCCCceEEEc
Confidence 8999999999999 4444221 01111 111333444444 355 366666 56788888888
Q ss_pred CC
Q 048290 134 SR 135 (253)
Q Consensus 134 S~ 135 (253)
++
T Consensus 311 ~~ 312 (386)
T 2ca6_A 311 NG 312 (386)
T ss_dssp TT
T ss_pred cC
Confidence 76
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.90 E-value=4.6e-10 Score=97.77 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=40.8
Q ss_pred cceEEECCCCcCccCCC----hhHhhcCC-CccEEEccCCcCcccCcccccCC-----CCCCEEeccCCccCCCcChhhh
Q 048290 4 QLRVLDLGKNAFFGEIP----TWTGESLQ-NLIVLSLKSNKFHGNIPYQLCHL-----GFIQVLDLSLNIISGKIPKCFN 73 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p----~~~~~~l~-~L~~L~L~~N~l~g~ip~~~~~l-----~~L~~LdLs~N~l~g~ip~~l~ 73 (253)
+|++|||++|.+++..+ ..+. .++ +|++|+|++|.+++..+..+..+ ++|+.|+|++|.+++..+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 35566666666554333 3443 455 56666666666655545444443 5555566655555554444333
Q ss_pred cc-----ccCcccc
Q 048290 74 NF-----SAMTYER 82 (253)
Q Consensus 74 ~l-----~~L~~L~ 82 (253)
.. ++|+.|+
T Consensus 102 ~~l~~~~~~L~~L~ 115 (362)
T 3goz_A 102 KTLAAIPFTITVLD 115 (362)
T ss_dssp HHHHTSCTTCCEEE
T ss_pred HHHHhCCCCccEEE
Confidence 32 4555555
No 131
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.89 E-value=1.6e-09 Score=90.65 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCcceEEECCCCcCcc--CCChhHhhcCCCccEEEccCCcCcccCcccccCCC--CCCEEeccCCccCCCcCh-------
Q 048290 2 CSQLRVLDLGKNAFFG--EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG--FIQVLDLSLNIISGKIPK------- 70 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g--~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~g~ip~------- 70 (253)
+++|+.|+|++|+|++ .+|..+. .+++|+.|+|++|+|++. .++..+. +|+.|+|++|.+.+.+|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 6789999999999998 5667777 899999999999999975 3455555 999999999999987773
Q ss_pred hhhccccCcccc
Q 048290 71 CFNNFSAMTYER 82 (253)
Q Consensus 71 ~l~~l~~L~~L~ 82 (253)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 477889999888
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=8e-10 Score=96.25 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=39.3
Q ss_pred EECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc----ccccCCC-CCCEEeccCCccCCCcChhhhcc-----cc
Q 048290 8 LDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP----YQLCHLG-FIQVLDLSLNIISGKIPKCFNNF-----SA 77 (253)
Q Consensus 8 L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip----~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l-----~~ 77 (253)
++|+.|+++|.+|..+. ..++|++|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45555555555554443 33445555555555554444 4445555 55555555555555555555443 55
Q ss_pred Ccccc
Q 048290 78 MTYER 82 (253)
Q Consensus 78 L~~L~ 82 (253)
|+.|+
T Consensus 82 L~~L~ 86 (362)
T 3goz_A 82 VTSLN 86 (362)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 55555
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=9.5e-09 Score=95.88 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=7.8
Q ss_pred CCCCEEeccCCccC
Q 048290 52 GFIQVLDLSLNIIS 65 (253)
Q Consensus 52 ~~L~~LdLs~N~l~ 65 (253)
++|+.|+|++|.++
T Consensus 181 ~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 181 SGLQELSVSDNQLA 194 (622)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCCC
Confidence 45555555555555
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.77 E-value=2.3e-08 Score=93.25 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=26.4
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG 66 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g 66 (253)
++|++|+|++|++++ +|. .+++|+.|+|++|++++ +|.. +++|++|+|++|++++
T Consensus 101 ~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 101 PGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp TTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence 344444444444442 332 23445555555555553 3332 2555566666665553
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.76 E-value=3.8e-09 Score=91.54 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=60.0
Q ss_pred eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290 6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER 82 (253)
Q Consensus 6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ 82 (253)
+.++-++|+++ .+|..+. ++++.|+|++|+|+...+..|.++++|++|||++|++.+.+| ..|.+++++..+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 56788899999 7887653 589999999999996555679999999999999999987787 4678888876543
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.76 E-value=5.6e-10 Score=99.74 Aligned_cols=68 Identities=18% Similarity=0.014 Sum_probs=33.6
Q ss_pred CCcceEEECCCCcCccCCC----hhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCCCcC
Q 048290 2 CSQLRVLDLGKNAFFGEIP----TWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISGKIP 69 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p----~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip 69 (253)
+++|+.|+|++|.+++.-. +.+...+++|+.|+|++|.+++. ++..+..+++|+.|||++|.+++..+
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 3555666666665553211 11111345556666666555543 34445555555555555555544333
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.66 E-value=5.3e-09 Score=93.35 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=37.4
Q ss_pred CcceEEECCCCcCcc----CCChhHhhcCCCccEEEccCCcCcccCcccc-cCCC----CCCEEeccCCccCC----CcC
Q 048290 3 SQLRVLDLGKNAFFG----EIPTWTGESLQNLIVLSLKSNKFHGNIPYQL-CHLG----FIQVLDLSLNIISG----KIP 69 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g----~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~-~~l~----~L~~LdLs~N~l~g----~ip 69 (253)
++|+.|+|++|++++ .+|..+. .+++|++|+|++|.++...+..+ ..+. +|++|+|++|.++. .+|
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 445555555555543 1333444 45555555555555544322222 1233 35555555555542 334
Q ss_pred hhhhccccCcccc
Q 048290 70 KCFNNFSAMTYER 82 (253)
Q Consensus 70 ~~l~~l~~L~~L~ 82 (253)
..+..+++|+.|+
T Consensus 107 ~~l~~~~~L~~L~ 119 (461)
T 1z7x_W 107 STLRTLPTLQELH 119 (461)
T ss_dssp HHTTSCTTCCEEE
T ss_pred HHHccCCceeEEE
Confidence 4555555555555
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=5.9e-08 Score=89.29 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=64.4
Q ss_pred CCcceEEECCCCcCccCC----ChhHhhcCCCccEEEccCCcCc----ccCcccccCCCCCCEEeccCCccCCCcChhhh
Q 048290 2 CSQLRVLDLGKNAFFGEI----PTWTGESLQNLIVLSLKSNKFH----GNIPYQLCHLGFIQVLDLSLNIISGKIPKCFN 73 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~----p~~~~~~l~~L~~L~L~~N~l~----g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 73 (253)
|++|++|+|++|.+++.- +.... .+++|+.|+|++|.++ +.++..+.++++|+.|+|++|.+.+ +|..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQ-HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHH-HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHh-cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 678999999999988763 33344 7899999999999997 3445556788999999999999885 778889
Q ss_pred ccccCcccc
Q 048290 74 NFSAMTYER 82 (253)
Q Consensus 74 ~l~~L~~L~ 82 (253)
++++|+.|+
T Consensus 241 ~~~~L~~L~ 249 (592)
T 3ogk_B 241 AAANLEEFC 249 (592)
T ss_dssp HCTTCCEEE
T ss_pred hhhHHHhhc
Confidence 999999887
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=3.2e-07 Score=78.57 Aligned_cols=71 Identities=11% Similarity=-0.122 Sum_probs=43.9
Q ss_pred CCCCCEEeccCCccCCCcChhhhccccCcccc-CCCCCcccccccccC-----C----CcccccceeeeeEEEeeccccc
Q 048290 51 LGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-CSNPTIGFAKLIFVP-----A----GTGYYYKYLVNLLLTWKGSENE 120 (253)
Q Consensus 51 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~n~~~~~~~~~ip~~-----~----~l~~~~~~~~~~~~~l~g~~p~ 120 (253)
+++|+.|+|++|+++..-+.+|.++++|+.++ .+++.. |+.. . .+.+.++ ++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~-----I~~~aF~~~~~L~~~l~l~~~--------l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT-----IGQRVFSNCGRLAGTLELPAS--------VTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE-----ECTTTTTTCTTCCEEEEECTT--------CCEECTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce-----ehHHHhhCChhccEEEEEccc--------ceEEchh
Confidence 67888899998888844446788888888887 444321 2222 1 1111111 2444556
Q ss_pred ccccccceeeeccC
Q 048290 121 YKSTLGLVRCLDLS 134 (253)
Q Consensus 121 ~~~~l~~L~~LdLS 134 (253)
.|.++++|+.++++
T Consensus 292 aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 292 AFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTCTTEEEEEEC
T ss_pred hhhCCccCCEEEeC
Confidence 77777777777774
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=5.5e-08 Score=81.25 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=46.4
Q ss_pred cCCCccEEEccCCcCcc--cCcccccCCCCCCEEeccCCccCCCcChhhhccc--cCcccc
Q 048290 26 SLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFS--AMTYER 82 (253)
Q Consensus 26 ~l~~L~~L~L~~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~L~ 82 (253)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 226 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEE
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEE
Confidence 68999999999999998 5567788999999999999999965 3455555 778777
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=4.9e-07 Score=77.43 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCC-EEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQ-VLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
|++|+.|+|++|+++ .+|...+.++.+|+.|+|.+| ++..-+..|.++++|+ .+++++ .++..-+.+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 678999999999988 455543338999999999988 7766667789999999 999988 676455678999999988
Q ss_pred cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeec
Q 048290 81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLD 132 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~Ld 132 (253)
++ .++- ++...+..|.++++|+.+.
T Consensus 302 l~l~~n~---------------------------i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDK---------------------------ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSC---------------------------CCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCc---------------------------cCccchhhhcCCcchhhhc
Confidence 87 2221 2444556777787787765
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=7.4e-08 Score=84.38 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=10.1
Q ss_pred ccccccccceeeeccCC
Q 048290 119 NEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 119 p~~~~~l~~L~~LdLS~ 135 (253)
...+...+.|+.|||++
T Consensus 204 ~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHGGGCSCCCEEECCS
T ss_pred HHHHhcCCCcCeEECCC
Confidence 34445555677777765
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=5.9e-08 Score=84.98 Aligned_cols=126 Identities=13% Similarity=-0.068 Sum_probs=77.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccc-----cCCCCCCEEeccCCccCCC----cChhhh
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQL-----CHLGFIQVLDLSLNIISGK----IPKCFN 73 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~-----~~l~~L~~LdLs~N~l~g~----ip~~l~ 73 (253)
++|+.|||++|.++..-...+...+++|+.|+|++|.++..-...+ ...++|+.|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5788999999988754333343356788899999998875443443 3467888889988888642 344556
Q ss_pred ccccCcccc-C-CCCCccc----ccccccC---CCcccccceeeeeEEEeec----ccccccccccceeeeccCC
Q 048290 74 NFSAMTYER-C-SNPTIGF----AKLIFVP---AGTGYYYKYLVNLLLTWKG----SENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 74 ~l~~L~~L~-~-n~~~~~~----~~~ip~~---~~l~~~~~~~~~~~~~l~g----~~p~~~~~l~~L~~LdLS~ 135 (253)
..++|+.|+ + |.+.... ...+... ..+.+.+|. ++. .+...+...+.|+.|||++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-------i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-------AGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-------CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-------CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 778888888 3 4332210 1111111 233344433 232 2344455668899999985
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=6.3e-07 Score=70.59 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=57.8
Q ss_pred CCcceEEECCCC-cCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCCC----c
Q 048290 2 CSQLRVLDLGKN-AFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISGK----I 68 (253)
Q Consensus 2 l~~L~~L~Ls~N-~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~----i 68 (253)
.+.|+.|+|++| .++.. +...+. ..++|++|+|++|.+... +...+...+.|+.|+|++|.+... +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 567899999998 88643 334444 568899999999998642 334455667899999999998744 3
Q ss_pred ChhhhccccCcccc
Q 048290 69 PKCFNNFSAMTYER 82 (253)
Q Consensus 69 p~~l~~l~~L~~L~ 82 (253)
...+...+.|+.|+
T Consensus 114 ~~~L~~n~~L~~L~ 127 (185)
T 1io0_A 114 VEALQSNTSLIELR 127 (185)
T ss_dssp HHGGGGCSSCCEEE
T ss_pred HHHHHhCCCceEEE
Confidence 45566667777776
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.09 E-value=4.4e-07 Score=83.44 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=72.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEcc----CCcCccc-----CcccccCCCCCCEEeccCC--ccCCCcCh
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLK----SNKFHGN-----IPYQLCHLGFIQVLDLSLN--IISGKIPK 70 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~----~N~l~g~-----ip~~~~~l~~L~~LdLs~N--~l~g~ip~ 70 (253)
|++|++|+++.|++++..+..+...+++|+.|+|+ .|.+++. ++..+.++++|+.|+|+++ .+++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 56788888877888776666666347788888885 6677653 3334566777777777643 35555555
Q ss_pred hhhc-cccCcccc--CCCCCcccc----cccccCCCcccccceeeeeEEEeecc-cccccccccceeeeccCC
Q 048290 71 CFNN-FSAMTYER--CSNPTIGFA----KLIFVPAGTGYYYKYLVNLLLTWKGS-ENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 71 ~l~~-l~~L~~L~--~n~~~~~~~----~~ip~~~~l~~~~~~~~~~~~~l~g~-~p~~~~~l~~L~~LdLS~ 135 (253)
.+.. +++|+.|+ .+.+..... ...+.-..+.+.++. +++. ++.....+++|+.|+|++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-------FSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-------CBHHHHHHHHHHCSSCCEEEEES
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-------CcHHHHHHHHHhcCccCeeECcC
Confidence 5543 66777776 333321000 001100122233322 2333 344556788899999887
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.93 E-value=2.4e-06 Score=78.48 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=40.0
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCC-cCccc-CcccccCCCCCCEEeccCCccCCCcChhhh----ccc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN-KFHGN-IPYQLCHLGFIQVLDLSLNIISGKIPKCFN----NFS 76 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~----~l~ 76 (253)
++|+.|+|++|.+++..+..+...+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 455566666665555444444323556666666655 33321 233333555666666666655544433333 333
Q ss_pred cCcccc
Q 048290 77 AMTYER 82 (253)
Q Consensus 77 ~L~~L~ 82 (253)
+|+.|+
T Consensus 185 ~L~~L~ 190 (594)
T 2p1m_B 185 SLVSLN 190 (594)
T ss_dssp CCCEEE
T ss_pred cCcEEE
Confidence 555554
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.86 E-value=2e-06 Score=78.96 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=17.9
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLK 36 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~ 36 (253)
|++|+.|+++.|++++..+..+...+++|+.|+|+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 44555555555555544444443235555555555
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=9e-06 Score=63.88 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=62.2
Q ss_pred CCcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEec--cCCccCCCc---
Q 048290 2 CSQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDL--SLNIISGKI--- 68 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdL--s~N~l~g~i--- 68 (253)
.++|++|||++|.++.. +...+. ..++|++|+|++|.++.. +...+...+.|+.|+| ++|.+...-
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 46899999999999753 344455 568999999999999853 4566778889999999 889997543
Q ss_pred -ChhhhccccCcccc
Q 048290 69 -PKCFNNFSAMTYER 82 (253)
Q Consensus 69 -p~~l~~l~~L~~L~ 82 (253)
...+...++|+.|+
T Consensus 143 l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 143 IANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHCSSCCEEE
T ss_pred HHHHHHhCCCcCEEe
Confidence 34455567888887
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.75 E-value=6e-05 Score=66.47 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=40.6
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
+|+.+++.+ .++..-+..|. +|.+|+.++|++|.++..-...|. ..+|+.+.|.++ ++..-..+|.++++|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~-~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFY-YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTT-TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhh-CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 456666654 44422233444 566677777766666643333343 466666666533 4423335566666666655
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.00013 Score=54.00 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=45.8
Q ss_pred eEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290 6 RVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65 (253)
Q Consensus 6 ~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 65 (253)
..+|-+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36888999987 35775543 47899999999999766677889999999999999875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.10 E-value=0.00056 Score=60.21 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=57.6
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC-----CCcChhhhcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS-----GKIPKCFNNF 75 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l 75 (253)
+|++|+.+++..| ++ .++...+.+ .+|+.+.| .|.++..-+..|.++++|+.+++.+|.+. ..-+.+|.++
T Consensus 224 ~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 224 KTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp TCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred CCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 4778999999875 55 344443324 78999999 45566555778999999999999888775 2334688888
Q ss_pred ccCcccc
Q 048290 76 SAMTYER 82 (253)
Q Consensus 76 ~~L~~L~ 82 (253)
++|+.+.
T Consensus 300 ~~L~~l~ 306 (401)
T 4fdw_A 300 PKLARFE 306 (401)
T ss_dssp TTCCEEC
T ss_pred ccCCeEE
Confidence 8988887
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.10 E-value=0.00012 Score=57.06 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=55.6
Q ss_pred cceEEECCCCcCccCCChhHhhcCCCccEEEccCCc-CcccCcccccCC----CCCCEEeccCCc-cCCCcChhhhcccc
Q 048290 4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNK-FHGNIPYQLCHL----GFIQVLDLSLNI-ISGKIPKCFNNFSA 77 (253)
Q Consensus 4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g~ip~~~~~l----~~L~~LdLs~N~-l~g~ip~~l~~l~~ 77 (253)
.|+.||++++.++..--..+. ++++|+.|+|+++. ++..--..++.+ ++|+.|+|+++. ++..--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 588999999988754334455 78999999999875 664333445554 479999999874 66443346777888
Q ss_pred Ccccc
Q 048290 78 MTYER 82 (253)
Q Consensus 78 L~~L~ 82 (253)
|+.|+
T Consensus 141 L~~L~ 145 (176)
T 3e4g_A 141 LKYLF 145 (176)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 88887
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.00 E-value=0.0001 Score=64.18 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCcceEEECCC--CcCccC-----CChhHh-hcCCCccEEEccCCcCcccCcccc---cCCCCCCEEeccCCccCCC---
Q 048290 2 CSQLRVLDLGK--NAFFGE-----IPTWTG-ESLQNLIVLSLKSNKFHGNIPYQL---CHLGFIQVLDLSLNIISGK--- 67 (253)
Q Consensus 2 l~~L~~L~Ls~--N~l~g~-----~p~~~~-~~l~~L~~L~L~~N~l~g~ip~~~---~~l~~L~~LdLs~N~l~g~--- 67 (253)
+++|+.|+|+. |...|. +...+. ..+++|++|+|++|.+....+..+ ..+++|+.|||+.|.+.+.
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence 68999999853 332221 111121 147899999999999986544444 3588999999999999864
Q ss_pred -cChhhhccccCcccc
Q 048290 68 -IPKCFNNFSAMTYER 82 (253)
Q Consensus 68 -ip~~l~~l~~L~~L~ 82 (253)
++..+.++++|+.|+
T Consensus 298 ~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFIN 313 (362)
T ss_dssp HHHTTHHHHTTCSEEE
T ss_pred HHHhhcccCCcceEEE
Confidence 444556788999988
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.98 E-value=0.00027 Score=61.44 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCccccc--CCCCCCEEeccC
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC--HLGFIQVLDLSL 61 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~--~l~~L~~LdLs~ 61 (253)
+++|+.|+|++|.-. .++. + .+++|+.|+|..+.++......++ .+++|+.|+|+.
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 567888888877311 2443 3 377888888887776644333443 677888888753
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.58 E-value=0.0061 Score=52.61 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=24.2
Q ss_pred cCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290 26 SLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER 82 (253)
Q Consensus 26 ~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 82 (253)
++.+|+.+.+..+ +...-...|.++++|+.+++.++.++..-+.+|.++.+|+.+.
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 3444444444322 2222223344555555555554444422234455555555443
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0023 Score=47.11 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=31.8
Q ss_pred CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCc
Q 048290 3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH 41 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~ 41 (253)
.+|+.|||++|+|+ .+|......+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 37999999999999 566554448999999999999875
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.48 E-value=0.0073 Score=52.56 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=53.3
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
|+.|+.+.+.++..+ .-...+. ++..|+.+.+. +.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~-~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFM-NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTT-TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccEEecccccce-ecCcccc-cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 445555555544332 1122333 56666666664 3343333445666666666666543 332223456666666655
Q ss_pred cCCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 82 RCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 82 ~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
. +|.. ++..-...|.++++|+.+++++
T Consensus 340 ~-----------ip~s----------------v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 340 A-----------IPSS----------------VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp E-----------ECTT----------------CCBCCGGGGTTCTTCCEEEESS
T ss_pred E-----------ECcc----------------cCEEhHhHhhCCCCCCEEEECC
Confidence 4 1211 1333445677888888888754
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.46 E-value=0.0011 Score=51.44 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=56.1
Q ss_pred CCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc-cCCCcChhhhcc----ccCcccc-CC--CCCcccccccccCC
Q 048290 27 LQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI-ISGKIPKCFNNF----SAMTYER-CS--NPTIGFAKLIFVPA 98 (253)
Q Consensus 27 l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l----~~L~~L~-~n--~~~~~~~~~ip~~~ 98 (253)
-..|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..+..+ ++|+.|+ +. ++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I------------ 127 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV------------ 127 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC------------
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC------------
Confidence 3579999999999876545567899999999999985 654333345543 3688887 21 22
Q ss_pred CcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290 99 GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR 135 (253)
Q Consensus 99 ~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~ 135 (253)
+..--..+..+++|+.|+|++
T Consensus 128 ----------------TD~Gl~~L~~~~~L~~L~L~~ 148 (176)
T 3e4g_A 128 ----------------TDKGIIALHHFRNLKYLFLSD 148 (176)
T ss_dssp ----------------CHHHHHHGGGCTTCCEEEEES
T ss_pred ----------------CHHHHHHHhcCCCCCEEECCC
Confidence 222223466788999999875
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.99 E-value=0.011 Score=51.52 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=47.2
Q ss_pred CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290 2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE 81 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 81 (253)
+..++.+.+..+.+. ...+. .+.+|+.+.+..+ ++..-..+|.++++|+.++|.++ ++..-..+|.++++|+.+
T Consensus 275 ~~~l~~~~~~~~~i~---~~~F~-~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVP---EKTFY-GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp CTTCCEEEECSSEEC---TTTTT-TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceeccCceeec---ccccc-ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 455566665554432 22344 6788888887654 55344556788888888888654 552334678888888877
Q ss_pred c
Q 048290 82 R 82 (253)
Q Consensus 82 ~ 82 (253)
.
T Consensus 349 ~ 349 (394)
T 4fs7_A 349 N 349 (394)
T ss_dssp C
T ss_pred E
Confidence 6
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.94 E-value=0.046 Score=47.41 Aligned_cols=120 Identities=7% Similarity=-0.078 Sum_probs=73.3
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+|..|+.+.+..+..+ .-...+. .+..++.+....+.+. ...|..+.+|+.+.+.++ ++..-..+|.++++|+.
T Consensus 251 ~~~~l~~~~~~~~~~~-i~~~~F~-~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKLR-IGGSLFY-NCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTCE-ECSCTTT-TCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcce-eeccccc-cccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 3677888888877654 3344555 7889998888776532 346788999999999765 55333467889999988
Q ss_pred cc-CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccC
Q 048290 81 ER-CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLS 134 (253)
Q Consensus 81 L~-~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS 134 (253)
++ .++...-..+++..- ..+.+..+ ++......|.++.+|+.+++.
T Consensus 325 i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--------l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 325 IDLPYLVEEIGKRSFRGCTSLSNINFPLS--------LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECCCTTCCEECTTTTTTCTTCCEECCCTT--------CCEECTTTBTTCTTCCEEEEE
T ss_pred EEeCCcccEEhHHhccCCCCCCEEEECcc--------ccEehHHHhhCCCCCCEEEEC
Confidence 87 443321001111100 11112222 244445577888888888874
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.67 E-value=0.066 Score=45.96 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=57.0
Q ss_pred CCcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 2 CSQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 2 l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
|.+|+.+++..+ +. .++. .+. ++.+|+.+.+.++.++..-...|.++.+|+.++|..+ ++-.-..+|.++++|+.
T Consensus 262 ~~~l~~i~l~~~-i~-~i~~~aF~-~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 262 CTALKTLNFYAK-VK-TVPYLLCS-GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp CTTCCEEEECCC-CS-EECTTTTT-TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred eehhcccccccc-ce-eccccccc-cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 455666666543 33 3443 444 8999999999999888666778999999999999765 55233468999999998
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
+.
T Consensus 338 i~ 339 (379)
T 4h09_A 338 IS 339 (379)
T ss_dssp CC
T ss_pred EE
Confidence 76
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.64 E-value=0.016 Score=45.72 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=40.9
Q ss_pred CcceEEECCCC-cCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCC
Q 048290 3 SQLRVLDLGKN-AFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISG 66 (253)
Q Consensus 3 ~~L~~L~Ls~N-~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g 66 (253)
+.|+.|+|++| +|... +-..+. .-+.|+.|+|++|++... +-..+..-+.|+.|+|+.|.|..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 46788888875 66432 233344 456788888888888632 22334455678888888888863
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.54 E-value=0.07 Score=46.25 Aligned_cols=78 Identities=12% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290 1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY 80 (253)
Q Consensus 1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 80 (253)
+|++|+.+++. +.++ .++...+.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++-.-..+|.++++|+.
T Consensus 286 ~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 286 NCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred cccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 46789999996 4555 455444338999999999865 55444677999999999999765 65333578999999998
Q ss_pred cc
Q 048290 81 ER 82 (253)
Q Consensus 81 L~ 82 (253)
++
T Consensus 362 i~ 363 (394)
T 4gt6_A 362 IE 363 (394)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.29 E-value=0.046 Score=43.08 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=44.5
Q ss_pred CcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCC
Q 048290 3 SQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLN 62 (253)
Q Consensus 3 ~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N 62 (253)
+.|+.|+|++|++... +...+. .-+.|+.|+|++|.|... +-..+..-+.|+.|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 5799999999999743 334444 457899999999999843 2334555677999999875
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=86.33 E-value=0.26 Score=28.64 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHhccCch
Q 048290 203 GFFVGFWGVCGTLMLNRSW 221 (253)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ 221 (253)
|+++.++++++.++|+|+.
T Consensus 20 Gv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3333333333334444443
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=80.77 E-value=0.43 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=13.3
Q ss_pred eeeeeehhhHHHHHHHHHHHHhc
Q 048290 195 GFYLSSILGFFVGFWGVCGTLML 217 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~ 217 (253)
..+.++++|.++++.++++..+|
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHHHHH
Confidence 44566667766666655554443
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=76.55 E-value=1.2 Score=24.03 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=16.2
Q ss_pred eeehhhHHHHHHHHHHHHhccCchh
Q 048290 198 LSSILGFFVGFWGVCGTLMLNRSWR 222 (253)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~r 222 (253)
+.+++|+++.+.++.+.++|+|..|
T Consensus 10 lt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEcccc
Confidence 3456677777777677777765544
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=75.27 E-value=0.64 Score=26.97 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhccCch
Q 048290 204 FFVGFWGVCGTLMLNRSW 221 (253)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ 221 (253)
+++.++++.+.++|+|+.
T Consensus 20 v~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333333334444443
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=68.00 E-value=1.1 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=10.4
Q ss_pred eeeehhhHHHHHHHHHHHHhccCch
Q 048290 197 YLSSILGFFVGFWGVCGTLMLNRSW 221 (253)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (253)
+++.++|+++.+++.+++++|.||.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 4444555433333333334444443
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=49.29 E-value=4.1 Score=22.88 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.7
Q ss_pred eehhhHH
Q 048290 199 SSILGFF 205 (253)
Q Consensus 199 ~~~~~~~ 205 (253)
+++.|++
T Consensus 18 ~vv~Gv~ 24 (41)
T 2k9y_A 18 GVAVGVV 24 (41)
T ss_dssp HHHHHHH
T ss_pred ehhHHHH
Confidence 3333433
No 171
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.13 E-value=9.5 Score=23.95 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=9.1
Q ss_pred ehhhHHHHHHHHHHHHhc
Q 048290 200 SILGFFVGFWGVCGTLML 217 (253)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~ 217 (253)
+++|.++++++.+++.+|
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 445555555555554443
No 172
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=34.80 E-value=11 Score=20.23 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=11.6
Q ss_pred eeeeeehhhHHHHHHHHHHHHhc
Q 048290 195 GFYLSSILGFFVGFWGVCGTLML 217 (253)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~ 217 (253)
..+.++++|-+++..+++..+++
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhh
Confidence 34455555555555544444444
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.34 E-value=53 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=9.5
Q ss_pred cccccccceeeeccCCCCC
Q 048290 120 EYKSTLGLVRCLDLSRKIP 138 (253)
Q Consensus 120 ~~~~~l~~L~~LdLS~~iP 138 (253)
..|.++.+|+.+.+....|
T Consensus 37 ~aF~~C~~L~~i~~~~~~P 55 (100)
T 2lz0_A 37 GMFSGCTALEKLILTGEDP 55 (100)
T ss_dssp TSSTTCTTCCCEEECCSCG
T ss_pred HHHhccCCccEEEEcCCCC
Confidence 3455555555555544333
No 174
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=23.80 E-value=25 Score=20.00 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=8.3
Q ss_pred eeeeeh-hhHHHHHHHHHHHHhc
Q 048290 196 FYLSSI-LGFFVGFWGVCGTLML 217 (253)
Q Consensus 196 ~~~~~~-~~~~~~~~~~~~~~~~ 217 (253)
.++++. +|+++..++++.++++
T Consensus 18 a~iGL~v~gVai~~vIVvsl~ml 40 (43)
T 2llm_A 18 AIIGLMVGGVVIATVIVITLVML 40 (43)
Confidence 344443 2333333334444333
Done!