Query 048292
Match_columns 229
No_of_seqs 141 out of 844
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08760 Cyt_b561_FRRS1_like Eu 100.0 2.1E-34 4.5E-39 241.5 20.6 176 26-204 2-190 (191)
2 smart00665 B561 Cytochrome b-5 100.0 1.4E-27 3E-32 188.5 12.6 124 51-176 1-129 (129)
3 PF03188 Cytochrom_B561: Eukar 99.9 4.7E-25 1E-29 174.9 13.9 129 51-179 1-133 (137)
4 cd08554 Cyt_b561 Eukaryotic cy 99.9 3.7E-24 8E-29 169.2 12.3 126 49-176 2-131 (131)
5 KOG4293 Predicted membrane pro 99.9 2.1E-26 4.5E-31 213.1 -8.1 193 26-218 182-382 (403)
6 cd08766 Cyt_b561_ACYB-1_like P 99.9 1.7E-22 3.8E-27 162.4 13.5 133 44-179 3-139 (144)
7 cd08761 Cyt_b561_CYB561D2_like 99.9 5.8E-22 1.3E-26 165.2 15.0 135 44-178 16-157 (183)
8 PLN02351 cytochromes b561 fami 99.9 1.2E-21 2.7E-26 168.1 16.5 133 44-179 45-181 (242)
9 cd08764 Cyt_b561_CG1275_like N 99.9 1.8E-21 4E-26 165.5 15.1 159 45-205 20-194 (214)
10 cd08765 Cyt_b561_CYBRD1 Verteb 99.9 2.9E-21 6.3E-26 156.4 13.5 133 47-179 10-146 (153)
11 cd08762 Cyt_b561_CYBASC3 Verte 99.9 4.4E-21 9.4E-26 158.5 13.5 132 48-179 34-169 (179)
12 PLN02810 carbon-monoxide oxyge 99.9 2E-20 4.4E-25 159.5 17.6 156 46-204 44-214 (231)
13 PLN02680 carbon-monoxide oxyge 99.8 3.5E-20 7.5E-25 158.9 16.0 133 44-179 42-178 (232)
14 cd08763 Cyt_b561_CYB561 Verteb 99.8 3.6E-20 7.7E-25 148.9 14.0 130 48-179 6-139 (143)
15 KOG1619 Cytochrome b [Energy p 99.8 2.4E-18 5.3E-23 146.7 9.5 132 46-179 52-187 (245)
16 PF10348 DUF2427: Domain of un 99.5 8E-14 1.7E-18 106.6 10.8 91 42-142 11-102 (105)
17 cd08760 Cyt_b561_FRRS1_like Eu 97.1 0.0097 2.1E-07 49.7 11.6 97 81-181 32-129 (191)
18 PF03188 Cytochrom_B561: Eukar 97.1 0.0043 9.3E-08 48.7 8.8 96 44-141 30-131 (137)
19 cd08554 Cyt_b561 Eukaryotic cy 97.1 0.0043 9.2E-08 48.6 8.6 93 85-179 2-95 (131)
20 cd08763 Cyt_b561_CYB561 Verteb 96.9 0.025 5.4E-07 45.6 12.1 94 84-179 6-100 (143)
21 smart00665 B561 Cytochrome b-5 96.9 0.033 7.2E-07 43.5 12.6 93 87-181 1-95 (129)
22 cd08764 Cyt_b561_CG1275_like N 96.9 0.036 7.8E-07 47.6 13.4 98 81-178 20-118 (214)
23 cd08761 Cyt_b561_CYB561D2_like 96.9 0.015 3.3E-07 48.3 10.9 96 81-178 17-116 (183)
24 PF13301 DUF4079: Protein of u 96.9 0.051 1.1E-06 45.2 13.9 60 116-179 112-172 (175)
25 cd08766 Cyt_b561_ACYB-1_like P 96.7 0.078 1.7E-06 42.8 13.4 94 82-177 5-98 (144)
26 PLN02680 carbon-monoxide oxyge 96.4 0.11 2.3E-06 45.2 13.2 93 84-178 46-138 (232)
27 cd08762 Cyt_b561_CYBASC3 Verte 96.2 0.57 1.2E-05 39.1 17.6 96 82-179 32-130 (179)
28 PLN02810 carbon-monoxide oxyge 96.0 0.24 5.1E-06 43.0 12.8 95 82-178 44-138 (231)
29 PLN02351 cytochromes b561 fami 95.8 0.38 8.2E-06 42.0 13.5 94 83-179 49-142 (242)
30 PF00033 Cytochrom_B_N: Cytoch 95.6 0.11 2.3E-06 42.3 9.0 93 86-178 10-127 (188)
31 PF10348 DUF2427: Domain of un 94.7 0.5 1.1E-05 36.0 9.7 89 80-178 13-102 (105)
32 cd08765 Cyt_b561_CYBRD1 Verteb 94.4 2.2 4.8E-05 34.8 13.4 96 82-179 9-107 (153)
33 PF00033 Cytochrom_B_N: Cytoch 93.9 1.5 3.3E-05 35.3 11.7 131 48-179 8-175 (188)
34 PF01794 Ferric_reduct: Ferric 93.4 0.81 1.8E-05 34.5 8.8 48 124-172 1-52 (125)
35 KOG1619 Cytochrome b [Energy p 92.9 3.1 6.6E-05 36.3 12.3 98 42-141 82-185 (245)
36 COG2717 Predicted membrane pro 92.2 6.9 0.00015 33.5 13.7 130 55-197 49-186 (209)
37 PF13172 PepSY_TM_1: PepSY-ass 91.7 0.41 8.8E-06 28.8 4.0 30 150-179 2-31 (34)
38 PF13301 DUF4079: Protein of u 91.7 1.1 2.5E-05 37.2 8.0 79 58-140 91-169 (175)
39 PF10067 DUF2306: Predicted me 91.6 0.9 2E-05 34.2 6.8 31 150-180 2-32 (103)
40 PRK11513 cytochrome b561; Prov 89.5 3.8 8.2E-05 33.9 9.3 28 118-145 42-69 (176)
41 COG5658 Predicted integral mem 89.0 5.8 0.00013 33.8 10.2 84 125-208 5-100 (204)
42 PF01292 Ni_hydr_CYTB: Prokary 88.5 12 0.00025 30.2 12.9 53 87-139 9-64 (182)
43 PF13706 PepSY_TM_3: PepSY-ass 88.4 0.98 2.1E-05 27.8 3.8 30 150-179 1-30 (37)
44 PF10951 DUF2776: Protein of u 88.1 3.2 7E-05 37.3 8.3 84 89-179 155-244 (347)
45 COG3038 CybB Cytochrome B561 [ 87.1 13 0.00029 31.0 11.1 57 89-145 13-74 (181)
46 PRK05771 V-type ATP synthase s 84.7 27 0.00058 34.6 13.8 93 83-176 388-498 (646)
47 PF01292 Ni_hydr_CYTB: Prokary 84.2 20 0.00043 28.7 13.0 50 48-99 6-57 (182)
48 PF13703 PepSY_TM_2: PepSY-ass 84.0 7.6 0.00017 28.1 7.4 30 148-178 56-85 (88)
49 PF13630 SdpI: SdpI/YhfL prote 83.1 3.7 8.1E-05 28.5 5.2 33 148-180 18-50 (76)
50 PRK05419 putative sulfite oxid 80.6 34 0.00075 29.0 13.9 24 151-175 144-167 (205)
51 PF13789 DUF4181: Domain of un 77.5 23 0.0005 26.9 8.3 61 151-213 25-85 (110)
52 COG4244 Predicted membrane pro 76.0 30 0.00066 28.4 9.0 95 80-179 43-144 (160)
53 COG4329 Predicted membrane pro 71.8 7.6 0.00016 31.0 4.4 80 90-170 63-149 (160)
54 PLN02631 ferric-chelate reduct 71.4 24 0.00052 35.6 8.8 21 152-172 187-207 (699)
55 PRK10179 formate dehydrogenase 68.2 75 0.0016 27.0 13.0 30 150-179 106-135 (217)
56 PF10361 DUF2434: Protein of u 68.0 73 0.0016 28.7 10.2 101 116-216 41-154 (296)
57 PF03929 PepSY_TM: PepSY-assoc 67.5 12 0.00026 21.4 3.5 24 154-177 2-25 (27)
58 PRK10639 formate dehydrogenase 64.2 52 0.0011 27.7 8.4 30 150-179 104-133 (211)
59 COG2717 Predicted membrane pro 62.5 13 0.00027 31.9 4.3 41 48-90 112-152 (209)
60 COG3038 CybB Cytochrome B561 [ 62.1 94 0.002 26.0 11.0 63 119-181 10-74 (181)
61 PLN02844 oxidoreductase/ferric 62.0 56 0.0012 33.2 9.4 22 152-173 190-211 (722)
62 CHL00070 petB cytochrome b6 61.5 96 0.0021 26.6 9.5 83 96-183 45-143 (215)
63 PF15330 SIT: SHP2-interacting 60.1 14 0.00029 28.3 3.7 29 189-217 3-31 (107)
64 PF10856 DUF2678: Protein of u 59.8 12 0.00026 29.1 3.3 55 119-179 29-83 (118)
65 TIGR02125 CytB-hydogenase Ni/F 59.5 99 0.0022 25.5 15.8 27 154-180 113-139 (211)
66 PF13706 PepSY_TM_3: PepSY-ass 59.3 14 0.00031 22.5 3.0 23 118-140 5-27 (37)
67 PRK03735 cytochrome b6; Provis 59.0 90 0.0019 26.9 9.0 62 117-183 90-151 (223)
68 KOG1608 Protein transporter of 54.6 1.7E+02 0.0037 26.7 10.1 57 124-180 218-280 (374)
69 CHL00070 petB cytochrome b6 54.3 1.4E+02 0.003 25.6 9.8 96 47-146 31-142 (215)
70 PF14800 DUF4481: Domain of un 51.8 74 0.0016 28.8 7.4 58 154-211 63-120 (308)
71 PLN02292 ferric-chelate reduct 51.3 57 0.0012 33.0 7.4 20 152-171 204-223 (702)
72 PF11158 DUF2938: Protein of u 50.9 31 0.00067 28.0 4.5 52 119-170 92-149 (150)
73 PF04238 DUF420: Protein of un 50.0 1.3E+02 0.0028 23.8 14.3 46 50-105 6-51 (133)
74 PF08507 COPI_assoc: COPI asso 50.0 1.2E+02 0.0026 23.6 11.1 53 149-207 57-109 (136)
75 cd00284 Cytochrome_b_N Cytochr 49.6 1.6E+02 0.0035 24.9 9.4 83 95-182 33-131 (200)
76 MTH00086 CYTB cytochrome b; Pr 49.5 1.6E+02 0.0034 27.3 9.5 58 118-182 69-126 (355)
77 TIGR01583 formate-DH-gamm form 49.1 1.6E+02 0.0034 24.6 12.5 30 150-179 101-130 (204)
78 PRK03735 cytochrome b6; Provis 47.1 1.6E+02 0.0034 25.5 8.5 95 48-146 40-150 (223)
79 PLN02601 beta-carotene hydroxy 46.9 1.1E+02 0.0024 27.4 7.6 77 150-227 93-185 (303)
80 MTH00046 CYTB cytochrome b; Va 44.2 2E+02 0.0043 26.7 9.2 58 118-182 71-128 (355)
81 MTH00131 CYTB cytochrome b; Pr 44.1 1.9E+02 0.0041 26.9 9.3 79 97-182 43-137 (380)
82 TIGR02125 CytB-hydogenase Ni/F 44.1 1.8E+02 0.0039 23.9 11.8 22 49-71 8-29 (211)
83 MTH00145 CYTB cytochrome b; Pr 43.9 2.1E+02 0.0046 26.6 9.5 79 97-182 44-138 (379)
84 PRK11513 cytochrome b561; Prov 43.0 1.9E+02 0.004 23.7 12.5 94 83-176 40-156 (176)
85 MTH00016 CYTB cytochrome b; Va 42.8 2.3E+02 0.005 26.4 9.6 80 96-182 43-138 (378)
86 PF02628 COX15-CtaA: Cytochrom 42.5 2.3E+02 0.005 25.0 9.3 95 121-223 71-167 (302)
87 MTH00100 CYTB cytochrome b; Pr 41.6 2.5E+02 0.0054 26.2 9.6 80 96-182 42-137 (379)
88 PF09990 DUF2231: Predicted me 40.6 1.5E+02 0.0032 21.8 8.8 47 91-137 8-59 (104)
89 PF05393 Hum_adeno_E3A: Human 40.6 51 0.0011 24.4 3.9 25 193-217 40-64 (94)
90 PF07332 DUF1469: Protein of u 40.4 1.6E+02 0.0034 22.1 7.2 25 188-212 74-98 (121)
91 cd01663 Cyt_c_Oxidase_I Cytoch 40.4 3.5E+02 0.0075 26.1 13.4 62 44-105 44-109 (488)
92 PF10002 DUF2243: Predicted me 39.9 2E+02 0.0043 23.2 9.0 79 90-169 50-136 (143)
93 PF10856 DUF2678: Protein of u 39.7 1E+02 0.0022 24.0 5.6 50 86-138 29-78 (118)
94 MTH00034 CYTB cytochrome b; Va 38.9 2.8E+02 0.006 25.8 9.5 80 96-182 42-137 (379)
95 MTH00156 CYTB cytochrome b; Pr 38.2 2.9E+02 0.0062 25.5 9.4 80 96-182 32-127 (356)
96 MTH00224 CYTB cytochrome b; Pr 37.5 2.7E+02 0.0058 26.0 9.1 80 96-182 43-138 (379)
97 PRK10263 DNA translocase FtsK; 37.4 3.7E+02 0.008 29.5 11.0 13 156-168 113-125 (1355)
98 PF13703 PepSY_TM_2: PepSY-ass 37.1 1.3E+02 0.0029 21.5 5.7 25 117-141 60-84 (88)
99 MTH00074 CYTB cytochrome b; Pr 37.1 2.8E+02 0.006 25.8 9.2 81 96-183 43-139 (380)
100 MTH00191 CYTB cytochrome b; Pr 36.9 3.2E+02 0.0069 25.3 9.5 81 95-182 38-134 (365)
101 PRK12585 putative monovalent c 36.8 2.6E+02 0.0057 23.7 8.0 24 82-105 32-57 (197)
102 TIGR00383 corA magnesium Mg(2+ 36.8 1.1E+02 0.0024 27.0 6.4 38 165-202 269-307 (318)
103 PF09323 DUF1980: Domain of un 36.4 2.4E+02 0.0052 23.1 8.0 22 124-145 72-93 (182)
104 PF12650 DUF3784: Domain of un 36.3 1E+02 0.0022 22.5 5.1 27 154-180 40-66 (97)
105 TIGR01620 hyp_HI0043 conserved 35.9 2E+02 0.0044 25.9 7.8 32 182-213 43-78 (289)
106 MTH00022 CYTB cytochrome b; Va 35.3 2.7E+02 0.0059 25.9 8.8 58 118-182 79-136 (379)
107 PRK09546 zntB zinc transporter 34.1 1E+02 0.0022 27.6 5.7 43 160-202 270-313 (324)
108 TIGR02230 ATPase_gene1 F0F1-AT 34.1 2.1E+02 0.0045 21.6 6.6 31 44-74 34-66 (100)
109 PF06341 DUF1056: Protein of u 33.8 1.6E+02 0.0035 20.4 7.0 54 150-207 4-57 (63)
110 PF03729 DUF308: Short repeat 33.0 1.2E+02 0.0026 20.0 4.7 46 120-170 24-69 (72)
111 PF14387 DUF4418: Domain of un 32.8 2.4E+02 0.0052 22.0 6.9 85 81-173 28-120 (124)
112 PF04156 IncA: IncA protein; 32.6 2.4E+02 0.0052 22.9 7.3 20 156-175 3-22 (191)
113 COG3658 Cytochrome b [Energy p 32.2 3E+02 0.0065 23.0 10.9 59 119-177 35-116 (192)
114 TIGR03145 cyt_nit_nrfE cytochr 32.2 5.3E+02 0.012 25.8 14.3 61 46-108 166-227 (628)
115 MTH00033 CYTB cytochrome b; Pr 32.2 4.3E+02 0.0093 24.7 10.0 58 118-182 77-134 (383)
116 PF11118 DUF2627: Protein of u 31.8 1.9E+02 0.0041 20.8 5.5 62 160-221 5-76 (77)
117 PF06027 DUF914: Eukaryotic pr 31.8 4E+02 0.0088 24.3 13.2 52 90-141 133-186 (334)
118 COG0598 CorA Mg2+ and Co2+ tra 31.6 74 0.0016 28.6 4.4 46 159-204 264-313 (322)
119 cd00284 Cytochrome_b_N Cytochr 29.5 3.2E+02 0.007 23.0 7.6 97 48-146 21-131 (200)
120 COG1230 CzcD Co/Zn/Cd efflux s 29.3 4.3E+02 0.0093 23.9 9.8 14 118-131 53-66 (296)
121 PF14358 DUF4405: Domain of un 29.1 1.8E+02 0.0039 19.4 6.7 23 148-170 36-58 (64)
122 PF13572 DUF4134: Domain of un 28.9 1.7E+02 0.0037 22.0 5.2 54 87-140 43-97 (98)
123 PF01794 Ferric_reduct: Ferric 28.3 2.4E+02 0.0052 20.6 6.9 41 119-162 77-119 (125)
124 COG3556 Predicted membrane pro 27.3 3E+02 0.0064 22.1 6.5 90 48-141 7-101 (150)
125 PF10242 L_HGMIC_fpl: Lipoma H 27.2 2.1E+02 0.0045 23.6 6.0 58 47-105 68-126 (181)
126 PRK12405 electron transport co 27.0 4.2E+02 0.0091 23.0 12.8 70 51-131 36-105 (231)
127 COG4097 Predicted ferric reduc 25.6 4.9E+02 0.011 24.7 8.5 54 119-172 39-94 (438)
128 PF02656 DUF202: Domain of unk 25.1 2.3E+02 0.0049 19.3 7.2 19 150-168 8-26 (73)
129 PF10746 Phage_holin_6: Phage 24.5 2.4E+02 0.0051 19.8 4.8 16 198-213 46-61 (66)
130 TIGR00930 2a30 K-Cl cotranspor 23.6 4.8E+02 0.01 27.5 9.1 25 148-172 490-514 (953)
131 PF10129 OpgC_C: OpgC protein; 23.3 5.9E+02 0.013 23.4 13.7 54 51-108 187-240 (358)
132 PRK05415 hypothetical protein; 22.9 4.3E+02 0.0094 24.4 7.7 31 183-213 96-130 (341)
133 COG3182 PiuB Uncharacterized i 22.5 94 0.002 29.7 3.4 33 147-179 3-35 (442)
134 KOG4812 Golgi-associated prote 22.4 1.5E+02 0.0033 26.1 4.4 47 94-141 196-242 (262)
135 PF05568 ASFV_J13L: African sw 22.2 96 0.0021 25.3 2.9 19 206-225 50-68 (189)
136 MTH00119 CYTB cytochrome b; Pr 22.0 6.4E+02 0.014 23.4 9.9 80 96-182 43-138 (380)
137 PF10873 DUF2668: Protein of u 22.0 95 0.002 25.2 2.8 41 187-227 66-106 (155)
138 COG4244 Predicted membrane pro 21.9 4.5E+02 0.0098 21.6 9.8 32 149-180 82-113 (160)
139 PF06653 Claudin_3: Tight junc 21.9 3.8E+02 0.0082 21.5 6.5 10 187-196 133-142 (163)
140 PF08114 PMP1_2: ATPase proteo 21.8 1.6E+02 0.0034 18.7 3.2 13 201-213 26-38 (43)
141 KOG4841 Dolichol-phosphate man 21.6 3.4E+02 0.0074 20.1 5.5 28 153-180 7-34 (95)
142 TIGR00910 2A0307_GadC glutamat 21.6 6.3E+02 0.014 24.1 9.0 14 162-175 406-419 (507)
143 TIGR00353 nrfE c-type cytochro 21.5 8E+02 0.017 24.3 16.2 61 46-108 114-175 (576)
144 PF15102 TMEM154: TMEM154 prot 21.4 42 0.0009 27.2 0.7 12 207-218 81-92 (146)
145 PF11862 DUF3382: Domain of un 21.3 3.5E+02 0.0075 20.0 6.1 75 96-170 14-100 (101)
146 PF08507 COPI_assoc: COPI asso 21.3 3.8E+02 0.0082 20.8 6.2 19 122-140 4-22 (136)
147 PHA03283 envelope glycoprotein 21.2 92 0.002 30.4 3.1 40 183-224 397-437 (542)
148 TIGR02112 cyd_oper_ybgE cyd op 21.0 3.3E+02 0.0071 20.3 5.4 47 118-169 40-88 (93)
149 PRK10588 hypothetical protein; 21.0 2.8E+02 0.0061 20.8 5.1 47 118-169 44-92 (97)
150 PF01372 Melittin: Melittin; 20.8 1.8E+02 0.0038 16.4 3.1 13 203-215 14-26 (26)
151 PF01222 ERG4_ERG24: Ergostero 20.8 5.7E+02 0.012 24.2 8.3 18 128-145 74-91 (432)
152 PF11014 DUF2852: Protein of u 20.3 1.3E+02 0.0029 23.3 3.3 22 52-73 11-32 (115)
153 KOG2082 K+/Cl- cotransporter K 20.2 5.5E+02 0.012 26.8 8.2 16 147-162 597-612 (1075)
154 MTH00053 CYTB cytochrome b; Pr 20.1 7.2E+02 0.016 23.2 10.1 58 118-182 81-138 (381)
155 KOG4671 Brain cell membrane pr 20.0 2E+02 0.0044 24.3 4.5 62 83-146 78-139 (201)
156 PRK05419 putative sulfite oxid 20.0 5.4E+02 0.012 21.7 13.0 52 118-172 41-92 (205)
No 1
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.1e-34 Score=241.45 Aligned_cols=176 Identities=32% Similarity=0.541 Sum_probs=155.7
Q ss_pred CcceEEeecCCccccccC-----------CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHH
Q 048292 26 ENEVTTNLRSGKGQSFSH-----------GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQIS 94 (229)
Q Consensus 26 ~~~~~~dl~~g~~~~~~~-----------~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~ 94 (229)
+++.++|+++|++++.+. +.+..+++||++|++||++++|.|++++||++ .+++.||++|+.+|++
T Consensus 2 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~---~~~~~~~~~H~~~q~~ 78 (191)
T cd08760 2 KSSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFL---LGDPVWFYLHAGLQLL 78 (191)
T ss_pred CcceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCchhHHHHHHHHHH
Confidence 356788888887654332 35778999999999999999999999999974 3578999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHH
Q 048292 95 GYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQ 174 (229)
Q Consensus 95 a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~ 174 (229)
+++++++|+++++.......++.+++|+++|+++++++++|+++|++||.+..+.|+.|+++|+++|++++++|++|+.+
T Consensus 79 ~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~ 158 (191)
T cd08760 79 AVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL 158 (191)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998752233455899999999999999999999999999988899999999999999999999999999
Q ss_pred HhhhccCC--CchHHHHHHHHHHHHHHHHHHH
Q 048292 175 GIIHQSHA--EKWKWLYVAILALLAFLAAALE 204 (229)
Q Consensus 175 Gl~~~~~~--~~~~~~~~~~~~~~~~v~i~le 204 (229)
|+.+.+.. +.+.++|.++++++.++++++|
T Consensus 159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (191)
T cd08760 159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILE 190 (191)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHc
Confidence 99999876 7888999999999999988887
No 2
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.95 E-value=1.4e-27 Score=188.47 Aligned_cols=124 Identities=29% Similarity=0.507 Sum_probs=111.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHHHH
Q 048292 51 AHGILNIIGWGILLPIGVIIARY-LRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGILV 128 (229)
Q Consensus 51 ~Hg~lM~iAw~iL~P~gil~aR~-~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~~v 128 (229)
+||++|++||++++|.|++++|+ .+. .+++.|+++|+.+|+++++++++|+++++...++. .++.+++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~--~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRF--LSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence 59999999999999999999997 333 46789999999999999999999999999875543 245589999999999
Q ss_pred HHHHHHHHHHhhhccCCC---CCCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292 129 FAFATIQILTSFLQPRRE---NECSKWWEIFHQSMGYTVVALSIANIFQGI 176 (229)
Q Consensus 129 ~~l~~lQ~l~G~~rp~~~---~~~R~~~~~~H~~~G~~~~~La~vni~~Gl 176 (229)
+++.++|++.|+++|.++ .+.|+.++++|+++|++++++|++|+.+|+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999988775 678999999999999999999999999985
No 3
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.93 E-value=4.7e-25 Score=174.94 Aligned_cols=129 Identities=28% Similarity=0.447 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHHHHHH
Q 048292 51 AHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILGILVF 129 (229)
Q Consensus 51 ~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG~~v~ 129 (229)
+||++|++||++++|.|++++|+.+..+.+++.|++.|..+|++++++.++|+++++...++ +.++.+++|+++|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 69999999999999999999997432234678899999999999999999999999886543 23455899999999999
Q ss_pred HHHHHHHHHhhhccC---CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 130 AFATIQILTSFLQPR---RENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 130 ~l~~lQ~l~G~~rp~---~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
++.++|++.|++++. .+.+.|+.+++.|+++|++++++|++|+.+|+...
T Consensus 81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~ 133 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEK 133 (137)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998644 44567888999999999999999999999999653
No 4
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.91 E-value=3.7e-24 Score=169.17 Aligned_cols=126 Identities=23% Similarity=0.336 Sum_probs=110.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHHHH
Q 048292 49 RTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILGIL 127 (229)
Q Consensus 49 ~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG~~ 127 (229)
+++||++|+++|++++|.|++.+|++|+. +++.|+++|+.+|++++++.++|+.+++...++ ...+.+++|+++|++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 57999999999999999999999998763 577899999999999999999999999986532 234557999999999
Q ss_pred HHHHHHHHHHHhhhcc---CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292 128 VFAFATIQILTSFLQP---RRENECSKWWEIFHQSMGYTVVALSIANIFQGI 176 (229)
Q Consensus 128 v~~l~~lQ~l~G~~rp---~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl 176 (229)
++++.++|++.|+.++ .+..+.|+.++++|+++|+++++++++|+++|.
T Consensus 80 ~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 80 TVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998754 333335899999999999999999999999884
No 5
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-26 Score=213.12 Aligned_cols=193 Identities=35% Similarity=0.632 Sum_probs=167.0
Q ss_pred CcceEEeecC--Cccccc-----cCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHH
Q 048292 26 ENEVTTNLRS--GKGQSF-----SHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYIL 98 (229)
Q Consensus 26 ~~~~~~dl~~--g~~~~~-----~~~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il 98 (229)
.....+|+.. |..+.. +.+.......||++|..+|++++|.|++.+||+|..+...+.||+.|+.+|..++++
T Consensus 182 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~ 261 (403)
T KOG4293|consen 182 ASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFIL 261 (403)
T ss_pred cceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEE
Confidence 3445566665 332222 223345566699999999999999999999999987777999999999999999999
Q ss_pred HHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292 99 GTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 99 ~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~ 178 (229)
...|+..+.+..+++....+..|..+|+.++++.++|++..++||.++++.|++|||+|+..||..+++|++|++.|+.+
T Consensus 262 ~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l 341 (403)
T KOG4293|consen 262 GVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLEL 341 (403)
T ss_pred EeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhh
Confidence 99999999887766656667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 048292 179 QSHAEKWK-WLYVAILALLAFLAAALEIFRWIVKSKLQLPI 218 (229)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~~~~v~i~lev~~w~~~~r~~~~~ 218 (229)
.++...|. ++|+.+.+...++.+.+|..+|+...++.+|+
T Consensus 342 ~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 382 (403)
T KOG4293|consen 342 LYPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPSPS 382 (403)
T ss_pred hcCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccCcc
Confidence 99888887 78999999999999999999998887776663
No 6
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.89 E-value=1.7e-22 Score=162.41 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=115.6
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhh
Q 048292 44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHR 122 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~ 122 (229)
+....+++|+.+|.+++.++++.|+++.|..| ..++.+..+|+.+|.+++++.++|+...+...++. ..+.+++|+
T Consensus 3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~---~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS 79 (144)
T cd08766 3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVP---GSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS 79 (144)
T ss_pred CCcceeeccHHHHHHHHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence 34568999999999999999999999988765 35777899999999999999999998888765432 345689999
Q ss_pred HHHHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 123 ILGILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 123 ~lG~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+|++++++..+|.+.|+ +.|....+.|+...++|+++|++++++|++++.+|+.+.
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek 139 (144)
T cd08766 80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 377765567888899999999999999999999999875
No 7
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.88 E-value=5.8e-22 Score=165.25 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=112.2
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchh
Q 048292 44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRF-PIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTH 121 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~-~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H 121 (229)
..+.++++||++|+++|++++|.|++..|-.... +.+++.|+++|+.+|.+++++.++|+.+.+...++ +..+.+++|
T Consensus 16 ~~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H 95 (183)
T cd08761 16 PGTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWH 95 (183)
T ss_pred CccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence 3456899999999999999999999975532211 13577899999999999999999999888876443 234558999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc---CCC--CCCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292 122 RILGILVFAFATIQILTSFLQP---RRE--NECSKWWEIFHQSMGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 122 ~~lG~~v~~l~~lQ~l~G~~rp---~~~--~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~ 178 (229)
+++|++++++.++|++.|+.++ ... .++|+.++++|+++|++++++|++|+.+|++.
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998632 222 25788899999999999999999999999988
No 8
>PLN02351 cytochromes b561 family protein
Probab=99.88 E-value=1.2e-21 Score=168.15 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=111.5
Q ss_pred CCcchh-HHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhh
Q 048292 44 GRHHAR-TAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHR 122 (229)
Q Consensus 44 ~~~~~~-~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~ 122 (229)
+.+..+ ++|+++|.+++.+|.+.|++++|.+|. .++.|+.+|+.+|.+|++++++|+...+...++...+.++.|+
T Consensus 45 ~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHS 121 (242)
T PLN02351 45 QEDLVYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHS 121 (242)
T ss_pred CccceeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHH
Confidence 334455 799999999999999999999998863 4566999999999999999999998832211111255689999
Q ss_pred HHHHHHHHHHHHHHHHhhh---ccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 123 ILGILVFAFATIQILTSFL---QPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 123 ~lG~~v~~l~~lQ~l~G~~---rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+|++++++..+|.+.|++ .|......|....++|..+|+.++++|++++.+|+.+.
T Consensus 122 WlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EK 181 (242)
T PLN02351 122 WMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEK 181 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999973 56555567888899999999999999999999999775
No 9
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.87 E-value=1.8e-21 Score=165.52 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=124.1
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC---CCCCCcchh
Q 048292 45 RHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS---SKHYTLKTH 121 (229)
Q Consensus 45 ~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~---~~~~~~~~H 121 (229)
....+++|+.+|++++.++++.|+++.|..|.. .++.+..+|+.+|.+|++++++|+...+...++ ...+.++.|
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlH 97 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLH 97 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchH
Confidence 345799999999999999999999999987742 456678899999999999999999887765332 234568999
Q ss_pred hHHHHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----C-----CCchHHH
Q 048292 122 RILGILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS-----H-----AEKWKWL 188 (229)
Q Consensus 122 ~~lG~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~-----~-----~~~~~~~ 188 (229)
+|+|++++++..+|.+.|+ +.|......|+...++|+++|+.+++++++++.+|+.+.. + +......
T Consensus 98 SwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~N 177 (214)
T cd08764 98 SWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLGN 177 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHHH
Confidence 9999999999999999997 4676554567777889999999999999999999997741 1 2233344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048292 189 YVAILALLAFLAAALEI 205 (229)
Q Consensus 189 ~~~~~~~~~~v~i~lev 205 (229)
..+++.++.++.++.-+
T Consensus 178 ~~gl~~~~fg~~V~~~~ 194 (214)
T cd08764 178 FIGIVLVIFGGLVVYLV 194 (214)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55555554444444433
No 10
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.87 E-value=2.9e-21 Score=156.41 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=115.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHH
Q 048292 47 HARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILG 125 (229)
Q Consensus 47 ~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG 125 (229)
..+++|+.||.+++.+++..++++.|..+..+.+++.+.++|+.+|.+++++.++|+...+...++ ...+.+++|+|+|
T Consensus 10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlG 89 (153)
T cd08765 10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVG 89 (153)
T ss_pred CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 479999999999999999999999875544334577789999999999999999999988886443 2355689999999
Q ss_pred HHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 126 ILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 126 ~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
++++++..+|.+.|+ +.|....+.|+...++|+++|+.+++++++++.+|+.+.
T Consensus 90 l~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek 146 (153)
T cd08765 90 LAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEK 146 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 367655567889999999999999999999999999875
No 11
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.86 E-value=4.4e-21 Score=158.50 Aligned_cols=132 Identities=21% Similarity=0.216 Sum_probs=114.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHH
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGI 126 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~ 126 (229)
.+++|+++|.+++.++...++++.|..+..+.+++.|+.+|..+|.++++++++|+..++...++. ..+.++.|+|+|+
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl 113 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGI 113 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHH
Confidence 699999999999999999999998865543335667899999999999999999999998875543 3556899999999
Q ss_pred HHHHHHHHHHHHhhh---ccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 127 LVFAFATIQILTSFL---QPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 127 ~v~~l~~lQ~l~G~~---rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
+++++..+|.+.|++ .|....+.|....++|+.+|+.++++|++++.+|+.+.
T Consensus 114 ~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek 169 (179)
T cd08762 114 CTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEK 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999973 55555567888899999999999999999999999875
No 12
>PLN02810 carbon-monoxide oxygenase
Probab=99.86 E-value=2e-20 Score=159.53 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=127.0
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHH
Q 048292 46 HHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRIL 124 (229)
Q Consensus 46 ~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~l 124 (229)
+..+++|+++|.+++.++...++++.|.++. .++.+..+|+.+|.++++++++|+...+...++. ..+.++.|+|+
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl 120 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL 120 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence 4489999999999999999999999877653 4667789999999999999999999998865543 35669999999
Q ss_pred HHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc----C-------CCchHHHHH
Q 048292 125 GILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS----H-------AEKWKWLYV 190 (229)
Q Consensus 125 G~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~----~-------~~~~~~~~~ 190 (229)
|++++++..+|.+.|+ +.|......|....++|..+|..++++|++++.+|+.+.. . +........
T Consensus 121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~ 200 (231)
T PLN02810 121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFT 200 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHH
Confidence 9999999999999997 5787766778888899999999999999999999998752 1 122334555
Q ss_pred HHHHHHHHHHHHHH
Q 048292 191 AILALLAFLAAALE 204 (229)
Q Consensus 191 ~~~~~~~~v~i~le 204 (229)
+++.++.++.+++-
T Consensus 201 Glliv~fg~~V~~~ 214 (231)
T PLN02810 201 AIITILYGAFVVLT 214 (231)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 13
>PLN02680 carbon-monoxide oxygenase
Probab=99.85 E-value=3.5e-20 Score=158.91 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=114.3
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhh
Q 048292 44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHR 122 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~ 122 (229)
+....+++|+++|.+++.+++..+++..|..| .+++.+..+|+.+|.+++++.++|+...+...++. ..+.+++|+
T Consensus 42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~---~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHS 118 (232)
T PLN02680 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP---GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHS 118 (232)
T ss_pred CCcceEechHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHH
Confidence 44568999999999999999999999976554 45777889999999999999999999887765533 355689999
Q ss_pred HHHHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 123 ILGILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 123 ~lG~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+|++++++..+|.+.|+ +.|....+.|+...++|+++|+.+++++++++.+|+.+.
T Consensus 119 WlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek 178 (232)
T PLN02680 119 WLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEK 178 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 467655556777789999999999999999999999775
No 14
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.84 E-value=3.6e-20 Score=148.85 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=114.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHHH
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILGI 126 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG~ 126 (229)
.+++|+.+|++++.+++..++++.|..+. .+++.+.++|+.+|.+++++.++|+...+...++ ..++.++.|+|+|+
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~--~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl 83 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRN--ETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGI 83 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHH
Confidence 89999999999999999999999887654 3567788999999999999999999998876443 33556899999999
Q ss_pred HHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 127 LVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 127 ~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
+++++..+|.+.|+ +.|....+.|..+.++|+++|+++++++++++.+|+.+.
T Consensus 84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek 139 (143)
T cd08763 84 LTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 467766667899999999999999999999999999764
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.76 E-value=2.4e-18 Score=146.75 Aligned_cols=132 Identities=19% Similarity=0.261 Sum_probs=116.1
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCC-CCCcchhhHH
Q 048292 46 HHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSK-HYTLKTHRIL 124 (229)
Q Consensus 46 ~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~-~~~~~~H~~l 124 (229)
+..+++|+++|.++|.++--.++++.|.+|+. .++.-.-+|..+|++|++++++|+...+...+... .+.++.|+|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl 129 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL 129 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence 66899999999999999999999999998863 45556789999999999999999998887655432 4558999999
Q ss_pred HHHHHHHHHHHHHHhhh---ccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 125 GILVFAFATIQILTSFL---QPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 125 G~~v~~l~~lQ~l~G~~---rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
|++++.+..+|.+.||+ .|.-..+.|....++|+.+|..++++|++|+.+|+.+.
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek 187 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEK 187 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999974 67666688999999999999999999999999999554
No 16
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.54 E-value=8e-14 Score=106.59 Aligned_cols=91 Identities=24% Similarity=0.412 Sum_probs=77.6
Q ss_pred cCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCC-CCCcch
Q 048292 42 SHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSK-HYTLKT 120 (229)
Q Consensus 42 ~~~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~-~~~~~~ 120 (229)
+++.+....+|+++|.+||++++|+|++..+. | . ++|.++|++++++.++|+.++....+..+ -++++.
T Consensus 11 ~~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~ 80 (105)
T PF10348_consen 11 PSPHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNA 80 (105)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence 34567889999999999999999999887553 3 2 35999999999999999999988654433 347899
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc
Q 048292 121 HRILGILVFAFATIQILTSFLQ 142 (229)
Q Consensus 121 H~~lG~~v~~l~~lQ~l~G~~r 142 (229)
|.++|+++++++++|+++|+++
T Consensus 81 H~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 81 HGKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 17
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.10 E-value=0.0097 Score=49.66 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=71.2
Q ss_pred CCcchhhhHhHHHHHHHHHH-HHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 81 YDEWHPLHMLCQISGYILGT-VGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 81 ~~~Wf~~H~~lq~~a~il~i-~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
.+..++.|..++.+++.+.. +|..++-.... ++......|..+=++.+++.++-..+++... .+.+..++-.|.+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~-~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~ 107 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLL-GDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAI 107 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchh
Confidence 45568999999999987765 44444322112 1222346899999888888888888888764 2234557779999
Q ss_pred HHHHHHHHHHHHHHHHhhhccC
Q 048292 160 MGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~ 181 (229)
+|.+++++.++|...|+.....
T Consensus 108 lGl~~~~l~~lQ~~~G~~~~~~ 129 (191)
T cd08760 108 LGIIVLALAILQPLLGLLRPHP 129 (191)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976643
No 18
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=97.08 E-value=0.0043 Score=48.70 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcC----C--CCCCC
Q 048292 44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGN----S--SKHYT 117 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~----~--~~~~~ 117 (229)
+++..+..|..++.++..... +|...+-..|+. .+++.....|..+-.+++++.+.-...|+.... + .++..
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~-~G~~~~~~~~~~-~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~ 107 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAI-IGFVAIFINKNR-NGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW 107 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHhccc-cCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence 456689999999999988766 555555444542 133455678999999988888877777776421 1 11223
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhh
Q 048292 118 LKTHRILGILVFAFATIQILTSFL 141 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~ 141 (229)
...|..+|.+++++...+...|+.
T Consensus 108 ~~~H~~~G~~~~~l~~~~i~~G~~ 131 (137)
T PF03188_consen 108 NKWHRWLGYLIYVLAIATIFLGLT 131 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999984
No 19
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=97.06 E-value=0.0043 Score=48.63 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=67.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHhHhhhcC-CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHH
Q 048292 85 HPLHMLCQISGYILGTVGWGIGLWLGN-SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYT 163 (229)
Q Consensus 85 f~~H~~lq~~a~il~i~G~~lg~~~~~-~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~ 163 (229)
|..|..++++|+++...-.++.....+ ..+......|..+..+.+++.++-...++..+.. +.++-+.-.|.++|.+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA--GGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccchhHHHHHHHH
Confidence 568999999998765544444433322 1222335689999999999888888888876542 2344566689999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 048292 164 VVALSIANIFQGIIHQ 179 (229)
Q Consensus 164 ~~~La~vni~~Gl~~~ 179 (229)
+.++...|...|+...
T Consensus 80 ~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 80 TVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997664
No 20
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.94 E-value=0.025 Score=45.58 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=69.5
Q ss_pred chhhhHhHHHHHHHHHHHHHHhHhhhcC-CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHH
Q 048292 84 WHPLHMLCQISGYILGTVGWGIGLWLGN-SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGY 162 (229)
Q Consensus 84 Wf~~H~~lq~~a~il~i~G~~lg~~~~~-~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~ 162 (229)
-|.+|..+|++|+++...-.++.+...+ .++......|..++.+.+++.++-...-+..+.+. ..+-+.-.|-|+|.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswlGl 83 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWCGI 83 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHH
Confidence 5899999999999977765656555322 22233356999999999988877766655544433 34556669999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 048292 163 TVVALSIANIFQGIIHQ 179 (229)
Q Consensus 163 ~~~~La~vni~~Gl~~~ 179 (229)
.++++-..|...|+...
T Consensus 84 ~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 84 LTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997553
No 21
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.94 E-value=0.033 Score=43.50 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=65.8
Q ss_pred hhHhHHHHHHHHHH-HHHHhHhh-hcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHH
Q 048292 87 LHMLCQISGYILGT-VGWGIGLW-LGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTV 164 (229)
Q Consensus 87 ~H~~lq~~a~il~i-~G~~lg~~-~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~ 164 (229)
+|..++++++++.. .|..+.-. ....++......|..+..+.+++.++-...++..+.+. .++.++-.|.++|.++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHHH
Confidence 48899999986554 44433321 11112223356899999999988888888887764432 2345677899999999
Q ss_pred HHHHHHHHHHHhhhccC
Q 048292 165 VALSIANIFQGIIHQSH 181 (229)
Q Consensus 165 ~~La~vni~~Gl~~~~~ 181 (229)
+++...|...|+.....
T Consensus 79 ~~l~~~Q~~~G~~~~~~ 95 (129)
T smart00665 79 FVLAGLQWLSGFLRPLP 95 (129)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999876643
No 22
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.90 E-value=0.036 Score=47.56 Aligned_cols=98 Identities=18% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 81 YDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 81 ~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
+...|.+|..+|++|+++...=.++.+...+.. +......|..+..+.+++.++-...-+-.+.+..+..+-+.-.|-|
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence 345799999999999977654444544433211 1222458999999999888777554443444332334445558999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 048292 160 MGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~ 178 (229)
+|..++++-..|...|+..
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999733
No 23
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.89 E-value=0.015 Score=48.26 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=70.0
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHhHhhhcC----CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhH
Q 048292 81 YDEWHPLHMLCQISGYILGTVGWGIGLWLGN----SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIF 156 (229)
Q Consensus 81 ~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~----~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~ 156 (229)
....|..|..+|.+++.+.....++.+...+ .++......|.++..+.+++.++-....+..+.+ +.++-++-.
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~--~~~~hf~s~ 94 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKER--NGKPHFTSW 94 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCCccch
Confidence 4557899999999999877766655544211 1223335789999998888887776666554332 234566678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 048292 157 HQSMGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 157 H~~~G~~~~~La~vni~~Gl~~ 178 (229)
|.++|..+.++...|...|+..
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999854
No 24
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.89 E-value=0.051 Score=45.24 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=45.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhh-hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 116 YTLKTHRILGILVFAFATIQILTSF-LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 116 ~~~~~H~~lG~~v~~l~~lQ~l~G~-~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
...++|-+.|+.+..++.++....- +.+. +++.++..|..++.+++++-.++..+|....
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g----~~~~~R~lHi~lN~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKG----NRPWARRLHIYLNSLALLLFAWQAITGWRIL 172 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999998888876543 2211 2456778999999999999999999998764
No 25
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.72 E-value=0.078 Score=42.75 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=65.1
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHH
Q 048292 82 DEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMG 161 (229)
Q Consensus 82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G 161 (229)
...|.+|..+|++|+++...=.++.+...+.++......|..+=.+.+++.++-...-+..+... ..+-+.-.|-|+|
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlG 82 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLG 82 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHH
Confidence 45799999999999876665455555543322223345888888887777766665544433322 2333455899999
Q ss_pred HHHHHHHHHHHHHHhh
Q 048292 162 YTVVALSIANIFQGII 177 (229)
Q Consensus 162 ~~~~~La~vni~~Gl~ 177 (229)
.+++++-..|...|+.
T Consensus 83 l~t~~L~~lQ~~~G~~ 98 (144)
T cd08766 83 IGTISLFGLQWLFGFV 98 (144)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999975
No 26
>PLN02680 carbon-monoxide oxygenase
Probab=96.43 E-value=0.11 Score=45.17 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred chhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHH
Q 048292 84 WHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYT 163 (229)
Q Consensus 84 Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~ 163 (229)
-|.+|-.+|++|+++...-.++.+...+.++......|..+=.+.+++.++-...-+-.|... .++-+.-.|-|+|..
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~ 123 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLA 123 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHH
Confidence 589999999999999765555555433323333355788887777777665554433333322 234455589999999
Q ss_pred HHHHHHHHHHHHhhh
Q 048292 164 VVALSIANIFQGIIH 178 (229)
Q Consensus 164 ~~~La~vni~~Gl~~ 178 (229)
++++-..|...|+..
T Consensus 124 t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 124 CLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999755
No 27
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.25 E-value=0.57 Score=39.14 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=65.6
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHhHhhhcCC---CCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292 82 DEWHPLHMLCQISGYILGTVGWGIGLWLGNS---SKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ 158 (229)
Q Consensus 82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~---~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~ 158 (229)
...|.+|..+|++|+++.-.=.++.+..... ++......|..+=.+.+++.++-...-+-.|...+ .+-..-.|.
T Consensus 32 ~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~--~~nlySlHS 109 (179)
T cd08762 32 SKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHH--TANLYSLHS 109 (179)
T ss_pred CCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--ccchhhHHH
Confidence 4479999999999998885444555543211 22223568888888888777766665554444331 222333699
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 048292 159 SMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 159 ~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+|..++++-..|-..|+...
T Consensus 110 WlGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 110 WVGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998554
No 28
>PLN02810 carbon-monoxide oxygenase
Probab=95.96 E-value=0.24 Score=42.96 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=67.6
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHH
Q 048292 82 DEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMG 161 (229)
Q Consensus 82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G 161 (229)
+.=|.+|-.+|++|+++.-.=.++.+.....++......|..+=.+.+++.++-...-+-.|... + .+-+--.|.|+|
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~-~-i~nlySLHSWlG 121 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES-G-IANLYSLHSWLG 121 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C-CCceeeHHHHHH
Confidence 34689999999999988876666666543323333466888888777777766655555444433 2 234445999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 048292 162 YTVVALSIANIFQGIIH 178 (229)
Q Consensus 162 ~~~~~La~vni~~Gl~~ 178 (229)
..++++=..|-..|+..
T Consensus 122 l~tv~Lf~lQw~~Gf~~ 138 (231)
T PLN02810 122 IGIISLYGIQWIYGFIV 138 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999833
No 29
>PLN02351 cytochromes b561 family protein
Probab=95.81 E-value=0.38 Score=42.02 Aligned_cols=94 Identities=21% Similarity=0.133 Sum_probs=59.8
Q ss_pred cchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHH
Q 048292 83 EWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGY 162 (229)
Q Consensus 83 ~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~ 162 (229)
..|.+|-.+|++|+++...=.++.+..-+.++......|..+=.+.+++.++-... -.|..++ ..+-+.-.|-|+|.
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~-~i~nlySLHSWlGl 125 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDG-IVANFYSLHSWMGL 125 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccC-CccchhHHHHHHHH
Confidence 34579999999999888765566665433232223557776655555555433333 1222221 12334447999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 048292 163 TVVALSIANIFQGIIHQ 179 (229)
Q Consensus 163 ~~~~La~vni~~Gl~~~ 179 (229)
.++++=..|-..|+...
T Consensus 126 ~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 126 ICVSLFGAQWLTGFMSF 142 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997554
No 30
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=95.59 E-value=0.11 Score=42.25 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=63.6
Q ss_pred hhhHhHHHHHHHHHHHHHHhHhh----hc-CCCCCCCcchhhHHHHHHHHHHHHHHHHhhhc------------------
Q 048292 86 PLHMLCQISGYILGTVGWGIGLW----LG-NSSKHYTLKTHRILGILVFAFATIQILTSFLQ------------------ 142 (229)
Q Consensus 86 ~~H~~lq~~a~il~i~G~~lg~~----~~-~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~r------------------ 142 (229)
..|+..-++-+++.+.|+.+... .. ..........|..+|++.+++.++..+.++.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 36776666666667777776421 11 11123346799999999999999999998887
Q ss_pred cC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292 143 PR--RENECSKWWEIFHQSMGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 143 p~--~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~ 178 (229)
.. ++.+.++.+|...+..-.+++.+..+...+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223445678888888899999999999999988
No 31
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=94.71 E-value=0.5 Score=36.00 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCCcchhhhHhHHHHHHHHHH-HHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292 80 EYDEWHPLHMLCQISGYILGT-VGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ 158 (229)
Q Consensus 80 ~~~~Wf~~H~~lq~~a~il~i-~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~ 158 (229)
+.+...+.|..+|++++++.. +|.+++... .++|...=++-+++.++-.++|.....+. + .-+.+-.|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~--------sr~~~~~q~~~~~l~~~g~~~g~~~~~~~-p-~lyp~n~H~ 82 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNAR--------SRWHLPVQTVFLVLMILGLFLGSVYNGST-P-DLYPNNAHG 82 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCCCCCHHH
Confidence 467789999999999887664 555554331 13565555555555555556665432211 0 134577999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 048292 159 SMGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 159 ~~G~~~~~La~vni~~Gl~~ 178 (229)
-+|+++.++.+++...|+..
T Consensus 83 k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754
No 32
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=94.43 E-value=2.2 Score=34.77 Aligned_cols=96 Identities=22% Similarity=0.127 Sum_probs=62.3
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHhHhhhcC---CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292 82 DEWHPLHMLCQISGYILGTVGWGIGLWLGN---SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ 158 (229)
Q Consensus 82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~---~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~ 158 (229)
+.=|.+|-.+|++|+++.-.=.++.+.... .++......|..+=.+.+++.++-...-+-.|... ..+-+.-.|-
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHS 86 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHS 86 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHH
Confidence 345899999999998885444444443211 11222345777776666666555544444333332 2345566999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 048292 159 SMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 159 ~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+|.+++++-..|...|+...
T Consensus 87 wlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 87 WVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997665
No 33
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=93.87 E-value=1.5 Score=35.32 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=79.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHH---HhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhh---------------
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIAR---YLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWL--------------- 109 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR---~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~--------------- 109 (229)
.+..| +++++++.+++..|..+.. ..............+|..+..+-.++.+.=+...+..
T Consensus 8 ~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 8 TRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 34556 4778889999999987752 1111122445568899877665544444333333322
Q ss_pred ---c-----CCCCCCCcchhhHHHHHHHHHHHHHHHHhhhc--------cCC---CCCCcchhHhHHHHHHHHHHHHHHH
Q 048292 110 ---G-----NSSKHYTLKTHRILGILVFAFATIQILTSFLQ--------PRR---ENECSKWWEIFHQSMGYTVVALSIA 170 (229)
Q Consensus 110 ---~-----~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~r--------p~~---~~~~R~~~~~~H~~~G~~~~~La~v 170 (229)
. .......+...+..-++++.+..++++.|+.. +.. ..........+|.+.+.++.++-.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01112235678888888888999999999877 111 1123567789999999988877766
Q ss_pred HHHHHhhhc
Q 048292 171 NIFQGIIHQ 179 (229)
Q Consensus 171 ni~~Gl~~~ 179 (229)
=++.++...
T Consensus 167 Hi~~a~~~~ 175 (188)
T PF00033_consen 167 HIYAAIFHH 175 (188)
T ss_dssp HHHHHHHBT
T ss_pred HHHHHHHHh
Confidence 666555443
No 34
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=93.40 E-value=0.81 Score=34.52 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCC----CCCCcchhHhHHHHHHHHHHHHHHHHH
Q 048292 124 LGILVFAFATIQILTSFLQPRR----ENECSKWWEIFHQSMGYTVVALSIANI 172 (229)
Q Consensus 124 lG~~v~~l~~lQ~l~G~~rp~~----~~~~R~~~~~~H~~~G~~~~~La~vni 172 (229)
+|.+.+++..++.+.+ .|+.. .+........+|+++|+.+.+++.+=.
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~ 52 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHG 52 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777887777 55432 111222345599999999999988765
No 35
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=92.93 E-value=3.1 Score=36.35 Aligned_cols=98 Identities=22% Similarity=0.362 Sum_probs=66.5
Q ss_pred cCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhh----cC--CCCC
Q 048292 42 SHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWL----GN--SSKH 115 (229)
Q Consensus 42 ~~~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~----~~--~~~~ 115 (229)
+++.+.....|..|-.+|..+-+ .|+..+--..+. .+.+--..+|-.+.+..+++-..=++.|+.. +. +.+.
T Consensus 82 ~~~k~~~KliH~~LH~~Alvl~i-~gl~avf~~hn~-~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs 159 (245)
T KOG1619|consen 82 YTSKKVSKLIHLGLHIIALVLAI-IGLCAVFDSHNL-VGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRS 159 (245)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh-cCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHh
Confidence 45556678899999999876644 554443111111 1122335799999988888877666666653 21 1123
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhh
Q 048292 116 YTLKTHRILGILVFAFATIQILTSFL 141 (229)
Q Consensus 116 ~~~~~H~~lG~~v~~l~~lQ~l~G~~ 141 (229)
....+|..+|+.++++++.|...|+.
T Consensus 160 ~lmP~H~~~Gl~~f~lai~ta~~Gl~ 185 (245)
T KOG1619|consen 160 RLMPWHVFLGLAIFILAIVTALTGLL 185 (245)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999984
No 36
>COG2717 Predicted membrane protein [Function unknown]
Probab=92.17 E-value=6.9 Score=33.53 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhc------CCCCCCCcchhhHHHHHH
Q 048292 55 LNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLG------NSSKHYTLKTHRILGILV 128 (229)
Q Consensus 55 lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~------~~~~~~~~~~H~~lG~~v 128 (229)
...+.+.+++=.....+|+.+ .+.+.++=+.+-+.|+..++.=+..-+... ....+..+.+=-.+|++.
T Consensus 49 ~~al~fLl~~la~tp~~~~~~-----~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~ia 123 (209)
T COG2717 49 IWALIFLLVTLAVTPLARLLK-----QPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIA 123 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHH
Confidence 444555666656666667765 466777888888887777665444332211 111122234455566666
Q ss_pred HHHHHHHHHHhh--hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHH
Q 048292 129 FAFATIQILTSF--LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLA 197 (229)
Q Consensus 129 ~~l~~lQ~l~G~--~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~~~~~~ 197 (229)
++++..-.+--+ .+. +..+.|+..|++ +|.+++||.+=...+ ...+..+.+.|.++.+...
T Consensus 124 flll~pLalTS~k~~~r----rlG~rW~~LHrL-vYl~~~L~~lH~~~s---~K~~~~~~vlY~ii~~~ll 186 (209)
T COG2717 124 FLLLIPLALTSFKWVRR----RLGKRWKKLHRL-VYLALILGALHYLWS---VKIDMPEPVLYAIIFAVLL 186 (209)
T ss_pred HHHHHHHHHHhhHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHH
Confidence 665544433322 111 222689999995 688888887766662 1223445566666544433
No 37
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=91.69 E-value=0.41 Score=28.82 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=25.7
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+.+..+|+++|....+.-.+-+.+|+.+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999988888887664
No 38
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=91.68 E-value=1.1 Score=37.19 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 048292 58 IGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQIL 137 (229)
Q Consensus 58 iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l 137 (229)
++|+.+...|-...=+.+. ++.+..-|...-.....+..+...+.-...++.+....+.|..++.+++++...|.+
T Consensus 91 l~~~~L~~lGG~~~~~~~~----~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 91 LAFMGLGALGGQLGTYRQN----GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHHHHHHHHcchHHHHHcC----CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666555544442 455556698888777777766665554443322223467999999999999999999
Q ss_pred Hhh
Q 048292 138 TSF 140 (229)
Q Consensus 138 ~G~ 140 (229)
.|.
T Consensus 167 tG~ 169 (175)
T PF13301_consen 167 TGW 169 (175)
T ss_pred HHH
Confidence 985
No 39
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=91.57 E-value=0.9 Score=34.24 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
|+.....||++||+-..+..+....|+.+..
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~ 32 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAF 32 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999998888888887754
No 40
>PRK11513 cytochrome b561; Provisional
Probab=89.48 E-value=3.8 Score=33.85 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRR 145 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~ 145 (229)
+..|..+|+++++++++-.+..+.++.+
T Consensus 42 ~~~H~s~G~~vl~L~v~Rl~~r~~~~~P 69 (176)
T PRK11513 42 NMIHVSCGISILVLMVVRLLLRLKYPTP 69 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4789999999999999999999986543
No 41
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=89.01 E-value=5.8 Score=33.83 Aligned_cols=84 Identities=12% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhh-ccCC-----------CCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHH
Q 048292 125 GILVFAFATIQILTSFL-QPRR-----------ENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAI 192 (229)
Q Consensus 125 G~~v~~l~~lQ~l~G~~-rp~~-----------~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~ 192 (229)
|++.-.+.++-.++.+. +|+. ..+.+..|+..|+++|-..++.+.+....+.......+-+...+...
T Consensus 5 ~lv~~gLvilagils~v~yp~~Pn~v~~~r~~~~~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~ 84 (204)
T COG5658 5 GLVLAGLVILAGILSIVLYPKLPNEVVGHRTVDSSPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFA 84 (204)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCccceeeecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHH
Confidence 44444555555555543 4441 12456799999999999999999998888876665444455555554
Q ss_pred HHHHHHHHHHHHHHHH
Q 048292 193 LALLAFLAAALEIFRW 208 (229)
Q Consensus 193 ~~~~~~v~i~lev~~w 208 (229)
.+++.+..+.+.+..+
T Consensus 85 ~~~Il~li~~ls~~l~ 100 (204)
T COG5658 85 AVLILFLILLLSAILV 100 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 42
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=88.45 E-value=12 Score=30.15 Aligned_cols=53 Identities=26% Similarity=0.247 Sum_probs=27.5
Q ss_pred hhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCC--cchhhHHHHHHHHHHHHHHHHh
Q 048292 87 LHMLCQISGYILGTVGWGIGLWLGNSS-KHYT--LKTHRILGILVFAFATIQILTS 139 (229)
Q Consensus 87 ~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~--~~~H~~lG~~v~~l~~lQ~l~G 139 (229)
.|+..-+.-+++.+.|+.+........ .... ...|.++|++++++.++=.+..
T Consensus 9 ~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 9 LHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 566555555555555554432211111 1111 4578888888777766555555
No 43
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=88.42 E-value=0.98 Score=27.77 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=23.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
|+.+...|+|+|.++-++-.+-+.+|....
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~~ 30 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVMV 30 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 567788999999988888888888886543
No 44
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=88.13 E-value=3.2 Score=37.33 Aligned_cols=84 Identities=14% Similarity=0.258 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHHHHHHhHhhhc-C-C-CCCCCcchhhHHHHHHHHHHHHHHHHhhhccCC---CCCCcchhHhHHHHHHH
Q 048292 89 MLCQISGYILGTVGWGIGLWLG-N-S-SKHYTLKTHRILGILVFAFATIQILTSFLQPRR---ENECSKWWEIFHQSMGY 162 (229)
Q Consensus 89 ~~lq~~a~il~i~G~~lg~~~~-~-~-~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~---~~~~R~~~~~~H~~~G~ 162 (229)
..+..+..++.++|++-++.+- + + .+.+.---|--.|+...+-.++-...-+.|..+ ..+.|+.|.+
T Consensus 155 ~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~------- 227 (347)
T PF10951_consen 155 NILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPK------- 227 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHH-------
Confidence 3455577788888888777642 2 2 223334569999999988777777666766544 3355666654
Q ss_pred HHHHHHHHHHHHHhhhc
Q 048292 163 TVVALSIANIFQGIIHQ 179 (229)
Q Consensus 163 ~~~~La~vni~~Gl~~~ 179 (229)
.++++|-+++..|+...
T Consensus 228 lVl~mGsi~~l~Gl~vl 244 (347)
T PF10951_consen 228 LVLVMGSISILWGLYVL 244 (347)
T ss_pred HHHHHhhHHHHhhhheE
Confidence 45566666666666554
No 45
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=87.13 E-value=13 Score=31.03 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHHHHHhHhhhcCCC-----CCCCcchhhHHHHHHHHHHHHHHHHhhhccCC
Q 048292 89 MLCQISGYILGTVGWGIGLWLGNSS-----KHYTLKTHRILGILVFAFATIQILTSFLQPRR 145 (229)
Q Consensus 89 ~~lq~~a~il~i~G~~lg~~~~~~~-----~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~ 145 (229)
+.+..+..++.++.+++|..+.+.+ +....+.|..+|+.+++++++-.+..+..|.+
T Consensus 13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 13 IALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3333344455555556665543222 12346899999999999999999999886654
No 46
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=84.75 E-value=27 Score=34.60 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=47.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCC--------------CC---cchhhHHHHHHHHHHHHHHHHhhhccCC
Q 048292 83 EWHPLHMLCQISGYILGTVGWGIGLWLGNSSKH--------------YT---LKTHRILGILVFAFATIQILTSFLQPRR 145 (229)
Q Consensus 83 ~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~--------------~~---~~~H~~lG~~v~~l~~lQ~l~G~~rp~~ 145 (229)
...+.-..+..+++..++.|+..|-..+..... .. +++=..+.+ .+++.++|..+|....-.
T Consensus 388 ~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-sl~iGvi~i~~g~~l~~~ 466 (646)
T PRK05771 388 GLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILII-SLLIGVIHLFLGLLLGFI 466 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccccccccCCccccCCCccHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777666554421110 01 111122332 233567888877642111
Q ss_pred -CCCCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292 146 -ENECSKWWEIFHQSMGYTVVALSIANIFQGI 176 (229)
Q Consensus 146 -~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl 176 (229)
.-+.+...+-+-..+|+.++++|.+-..++.
T Consensus 467 ~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 467 NNVRKGDYKDAFLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1012223333444577777777777666654
No 47
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=84.17 E-value=20 Score=28.74 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=26.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc--hhhhHhHHHHHHHHH
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEW--HPLHMLCQISGYILG 99 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~W--f~~H~~lq~~a~il~ 99 (229)
.+..| +++++++.+++..|.....-.+.. .....+ ..+|..+..+-..+.
T Consensus 6 ~r~~H-W~~a~~~i~l~~tG~~~~~~~~~~-~~~~~~~~~~~H~~~G~~~~~~~ 57 (182)
T PF01292_consen 6 TRILH-WLNALSFIALIATGLWIHFPPPGL-YFGDFGGVRNWHVIAGLLLFALL 57 (182)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcccccc-cccccchHHhHHHHHHHHHHHHH
Confidence 34556 456777888888887653222211 111222 678988555443333
No 48
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=83.99 E-value=7.6 Score=28.12 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292 148 ECSKWWEIFHQSMGYTVVALSIANIFQGIIH 178 (229)
Q Consensus 148 ~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~ 178 (229)
+.|+ +.-.|+.+|....+.-.+-+.+|+..
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 66699999999998888888888765
No 49
>PF13630 SdpI: SdpI/YhfL protein family
Probab=83.08 E-value=3.7 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 148 ECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 148 ~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
+....|+..|+..|...++.|++.+..|+....
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~ 50 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF 50 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999888887664
No 50
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=80.62 E-value=34 Score=29.00 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=16.4
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHH
Q 048292 151 KWWEIFHQSMGYTVVALSIANIFQG 175 (229)
Q Consensus 151 ~~~~~~H~~~G~~~~~La~vni~~G 175 (229)
+.|+..|+. .+.+.+++.+=.+..
T Consensus 144 ~~Wk~LH~l-~Y~a~~L~~~H~~~~ 167 (205)
T PRK05419 144 KRWQKLHRL-VYLIAILAPLHYLWS 167 (205)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 379999998 555566776665443
No 51
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=77.49 E-value=23 Score=26.89 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=36.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048292 151 KWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSK 213 (229)
Q Consensus 151 ~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~~~~~~~v~i~lev~~w~~~~r 213 (229)
+..|..|++.-+.+.+..++.+..+..+...+... .+..+....++....-....|++.++
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~ra~mEWKy~re 85 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFRFFY--PYILIFLFLIILFCFRAFMEWKYDRE 85 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66789999999999999998887666665432111 12222233333344444555766554
No 52
>COG4244 Predicted membrane protein [Function unknown]
Probab=75.99 E-value=30 Score=28.38 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCcchhhhHhHHHHHHHHHHHHHHhHhhh---cCC--CCCCCcchhhHHHHHHHHHHHHHHHHhhhc--cCCCCCCcch
Q 048292 80 EYDEWHPLHMLCQISGYILGTVGWGIGLWL---GNS--SKHYTLKTHRILGILVFAFATIQILTSFLQ--PRRENECSKW 152 (229)
Q Consensus 80 ~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~---~~~--~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~r--p~~~~~~R~~ 152 (229)
++..|+..=+.....|.+.+..+...++.- .++ .......+|..+|.++.++..+ .+.+| ++.+.. ..
T Consensus 43 ~~~~~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~~la~---~~~~r~~~~~~~~--~~ 117 (160)
T COG4244 43 GKDRWFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLIVLAI---LTAWRYVHRNDAV--AA 117 (160)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCh--hh
Confidence 345688888888778777777776666541 121 1122356888888877764332 23333 333321 11
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 153 WEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 153 ~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
..+.=-+++.++.++-..+..+|-.+.
T Consensus 118 v~~~~L~lsl~~~~Lv~l~g~lG~~l~ 144 (160)
T COG4244 118 VSPAGLLLSLATVLLVALQGYLGAQLV 144 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 223334577777777777777776554
No 53
>COG4329 Predicted membrane protein [Function unknown]
Probab=71.80 E-value=7.6 Score=31.02 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccC-------CCCCCcchhHhHHHHHHH
Q 048292 90 LCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPR-------RENECSKWWEIFHQSMGY 162 (229)
Q Consensus 90 ~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~-------~~~~~R~~~~~~H~~~G~ 162 (229)
.......++++.|+.+-...++ .+++..+.|.+.|-..+....+|..=|.+.|+ +..-.+-.|+..-..+|.
T Consensus 63 LFHa~~wv~tv~Gl~~lwr~gr-r~~~~wSa~~~~G~ll~GaGlFnl~eGtinHqilgiHhv~~~v~~i~wD~gflvlga 141 (160)
T COG4329 63 LFHAFSWVATVGGLFMLWRLGR-RKTFQWSAKYWWGGLLLGAGLFNLYEGTINHQILGIHHVRYVVNVIVWDFGFLVLGA 141 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCcceeehhhhhhhhhhcccchheeehhhhhhhheeeeecccceeeeehhHHHHHHH
Confidence 3445677778877776555444 34556688899998888888888887766543 233345566655555555
Q ss_pred HHHHHHHH
Q 048292 163 TVVALSIA 170 (229)
Q Consensus 163 ~~~~La~v 170 (229)
.+.+.|.+
T Consensus 142 lmviiG~v 149 (160)
T COG4329 142 LMVIIGLV 149 (160)
T ss_pred HHHHHHHH
Confidence 55555543
No 54
>PLN02631 ferric-chelate reductase
Probab=71.36 E-value=24 Score=35.60 Aligned_cols=21 Identities=14% Similarity=0.016 Sum_probs=13.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHH
Q 048292 152 WWEIFHQSMGYTVVALSIANI 172 (229)
Q Consensus 152 ~~~~~H~~~G~~~~~La~vni 172 (229)
.++.+|||+||.+++++++=.
T Consensus 187 ~~i~yHRWlGri~~~la~iH~ 207 (699)
T PLN02631 187 SSIKYHIWLGHVSNFLFLVHT 207 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776665543
No 55
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=68.19 E-value=75 Score=27.01 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=26.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
...+|...+.....+.+++.+.+.+|+.+.
T Consensus 106 ~gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 106 VGKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999886
No 56
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=67.96 E-value=73 Score=28.71 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=58.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhh---hccCC-----CCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccC--CCch
Q 048292 116 YTLKTHRILGILVFAFATIQILTSF---LQPRR-----ENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSH--AEKW 185 (229)
Q Consensus 116 ~~~~~H~~lG~~v~~l~~lQ~l~G~---~rp~~-----~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~--~~~~ 185 (229)
..-..|..+|++.-++..+-..+-+ -+|.+ +.+.+.+=+..-++.+.++...|+++++..++.-.. +...
T Consensus 41 ~~ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~p 120 (296)
T PF10361_consen 41 NPIGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLP 120 (296)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhccccc
Confidence 3357899999988776655554433 23332 222333445556667888888888888887766421 1122
Q ss_pred HH--HHHHHHHHHHHHHHHHH-HHHHHHHhhccC
Q 048292 186 KW--LYVAILALLAFLAAALE-IFRWIVKSKLQL 216 (229)
Q Consensus 186 ~~--~~~~~~~~~~~v~i~le-v~~w~~~~r~~~ 216 (229)
.+ .+.-++...+.++++=| ++.|-..+++|-
T Consensus 121 iil~sfF~~l~~~~~lA~vWE~VRhWGSw~ERQ~ 154 (296)
T PF10361_consen 121 IILQSFFWYLMQPGTLAAVWEAVRHWGSWQERQF 154 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhcc
Confidence 22 23334444555555556 566877666544
No 57
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=67.51 E-value=12 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhh
Q 048292 154 EIFHQSMGYTVVALSIANIFQGII 177 (229)
Q Consensus 154 ~~~H~~~G~~~~~La~vni~~Gl~ 177 (229)
+..|+|++-+.-++-++-+.+|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555555555554
No 58
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=64.16 E-value=52 Score=27.72 Aligned_cols=30 Identities=7% Similarity=0.186 Sum_probs=24.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
...+|...+..-..+.+++.+.+.+|+.+.
T Consensus 104 ~~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 104 TGRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888899998875
No 59
>COG2717 Predicted membrane protein [Function unknown]
Probab=62.53 E-value=13 Score=31.92 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=32.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHh
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHML 90 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~ 90 (229)
....-..+-++||.+++|.++-+.+..+.- -++.|.++|+.
T Consensus 112 ~~rpyitiG~iaflll~pLalTS~k~~~rr--lG~rW~~LHrL 152 (209)
T COG2717 112 LKRPYITIGMIAFLLLIPLALTSFKWVRRR--LGKRWKKLHRL 152 (209)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence 445556778899999999999998877642 23789999994
No 60
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=62.15 E-value=94 Score=26.01 Aligned_cols=63 Identities=14% Similarity=0.025 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhccCC--CCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 048292 119 KTHRILGILVFAFATIQILTSFLQPRR--ENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 119 ~~H~~lG~~v~~l~~lQ~l~G~~rp~~--~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~ 181 (229)
..-..+=+.+..+.+.|...|.++..- ....+.....+|+.+|..+++|.+.=+...+....+
T Consensus 10 ~~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 10 LVQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345556677778888899999875432 222456677799999999999999999998887754
No 61
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=62.05 E-value=56 Score=33.15 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=16.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q 048292 152 WWEIFHQSMGYTVVALSIANIF 173 (229)
Q Consensus 152 ~~~~~H~~~G~~~~~La~vni~ 173 (229)
..+.+|+|+||.+++++.+=..
T Consensus 190 ~~i~fHrWlGr~~~llallH~i 211 (722)
T PLN02844 190 ASVRYHVWLGTSMIFFATVHGA 211 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888776553
No 62
>CHL00070 petB cytochrome b6
Probab=61.50 E-value=96 Score=26.63 Aligned_cols=83 Identities=8% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
.+..+.|+.++.....+. +....+.|.+-.-+.++++.+...-|++...-+.+ |. .-+.
T Consensus 45 ~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-re----~~W~ 119 (215)
T CHL00070 45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKP-RE----LTWV 119 (215)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cc----cCcH
Confidence 445567888776543221 11235688888888888888888888765322211 11 2366
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHAE 183 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~~ 183 (229)
.|.+++++.+...++|..+.-+..
T Consensus 120 ~Gv~l~~l~m~~af~GY~Lpw~q~ 143 (215)
T CHL00070 120 TGVVLAVLTVSFGVTGYSLPWDQI 143 (215)
T ss_pred HHHHHHHHHHHHHHccccCCcchh
Confidence 999999999999999998875443
No 63
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=60.10 E-value=14 Score=28.33 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 048292 189 YVAILALLAFLAAALEIFRWIVKSKLQLP 217 (229)
Q Consensus 189 ~~~~~~~~~~v~i~lev~~w~~~~r~~~~ 217 (229)
..++++++.++.++.-+..|+..+|+.+.
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34555666677777888899888886554
No 64
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=59.77 E-value=12 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 119 KTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 119 ~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
-.|-++|.++.++.++-.+.++++|.++- +..|.+++..+++..+.++.+-...-
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p------~p~~iffavcI~l~~~s~~lLI~WYR 83 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPP------KPLHIFFAVCILLICISAILLIFWYR 83 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCC------CceEEehHHHHHHHHHHHHhheeehh
Confidence 45677777777777777777777665431 23456666666666655555544443
No 65
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=59.53 E-value=99 Score=25.46 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 154 EIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 154 ~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
|..-+..-..++++..+.+.+|+.+..
T Consensus 113 n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 113 NPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777888888889999987753
No 66
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=59.34 E-value=14 Score=22.51 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh
Q 048292 118 LKTHRILGILVFAFATIQILTSF 140 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~ 140 (229)
...|.++|+++-.+.++..+.|.
T Consensus 5 ~~~H~W~Gl~~g~~l~~~~~tG~ 27 (37)
T PF13706_consen 5 RKLHRWLGLILGLLLFVIFLTGA 27 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 46899999999999888888874
No 67
>PRK03735 cytochrome b6; Provisional
Probab=58.98 E-value=90 Score=26.95 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=43.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 117 TLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAE 183 (229)
Q Consensus 117 ~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~ 183 (229)
..+.|.+=.-+.++++.++..-+++...-+.+ |. .-++.|.+++++.+...++|..+.-+..
T Consensus 90 iR~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-re----~~W~~Gv~l~~l~~~~af~GY~Lpw~q~ 151 (223)
T PRK03735 90 VRGMHHWGASLVIVMMFLHTLRVFFTGGYKKP-RE----LNWVVGVLIFFVTVGLGFTGYLLPWDQK 151 (223)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCC-CC----ceeHHHHHHHHHHHHHHhccccCCcccc
Confidence 35678888888888888888877764221111 11 2366899999999999999988875443
No 68
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.58 E-value=1.7e+02 Score=26.70 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=36.3
Q ss_pred HHHHHHHH-HHHHHHHhhhc-----cCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 124 LGILVFAF-ATIQILTSFLQ-----PRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 124 lG~~v~~l-~~lQ~l~G~~r-----p~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
+|++++.| .+.|.+.-..| .++..|.+..|+-.-...-..++++|+.+++.|+.-.+
T Consensus 218 lgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~e 280 (374)
T KOG1608|consen 218 LGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAE 280 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 45555554 34455443222 23344667788866666666788999999999987664
No 69
>CHL00070 petB cytochrome b6
Probab=54.33 E-value=1.4e+02 Score=25.60 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=56.0
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchh------------hhHhHHHHHHHHHHHHHHh----Hhhhc
Q 048292 47 HARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHP------------LHMLCQISGYILGTVGWGI----GLWLG 110 (229)
Q Consensus 47 ~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~------------~H~~lq~~a~il~i~G~~l----g~~~~ 110 (229)
.....=|.+..+++.+.+-.|++.+-++.+-+ +..|.- +=+.++.-|.-+.++...+ ++..+
T Consensus 31 ~~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~--~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~g 108 (215)
T CHL00070 31 NIFYCLGGITLTCFLVQVATGFAMTFYYRPTV--TEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTG 108 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556699999999999999999998887531 111111 1122222222222222221 22222
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 111 NSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146 (229)
Q Consensus 111 ~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~ 146 (229)
...+ +...-=..|++++.+.......|+.-|...
T Consensus 109 sYk~--pre~~W~~Gv~l~~l~m~~af~GY~Lpw~q 142 (215)
T CHL00070 109 GFKK--PRELTWVTGVVLAVLTVSFGVTGYSLPWDQ 142 (215)
T ss_pred hhcC--CcccCcHHHHHHHHHHHHHHHccccCCcch
Confidence 2111 122345789999999999999999887644
No 70
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=51.85 E-value=74 Score=28.80 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048292 154 EIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVK 211 (229)
Q Consensus 154 ~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~~~~~~~v~i~lev~~w~~~ 211 (229)
.+.|..+-.+.++.-|++++.|+.+...+..|.....+-++.+++...+.-+..|.++
T Consensus 63 ~~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~~Llv~l~ai~lt~~l~lv~~~~~r 120 (308)
T PF14800_consen 63 RYFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVGWLLVNLAAIFLTMALILVFMRHQR 120 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHccchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999977777865444433344443333334444433
No 71
>PLN02292 ferric-chelate reductase
Probab=51.33 E-value=57 Score=33.00 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=12.7
Q ss_pred hhHhHHHHHHHHHHHHHHHH
Q 048292 152 WWEIFHQSMGYTVVALSIAN 171 (229)
Q Consensus 152 ~~~~~H~~~G~~~~~La~vn 171 (229)
.++.+|||+||++++++++=
T Consensus 204 ~f~~yHRWlGrii~ll~~lH 223 (702)
T PLN02292 204 SSIKYHIWLGHLVMTLFTSH 223 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666777777766666553
No 72
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=50.87 E-value=31 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=36.0
Q ss_pred chhhHHHHHHHH--HHHHHHHHhh--h--ccCCCCCCcchhHhHHHHHHHHHHHHHHH
Q 048292 119 KTHRILGILVFA--FATIQILTSF--L--QPRRENECSKWWEIFHQSMGYTVVALSIA 170 (229)
Q Consensus 119 ~~H~~lG~~v~~--l~~lQ~l~G~--~--rp~~~~~~R~~~~~~H~~~G~~~~~La~v 170 (229)
-.=-.+|+++.+ ..+.||.+|. . +.++..+.|-.--..|..+|..+++.+.+
T Consensus 92 ~~ali~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~~ 149 (150)
T PF11158_consen 92 LPALIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSALA 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678887766 5789999976 3 22223344555677899999999887753
No 73
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=50.02 E-value=1.3e+02 Score=23.84 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHh
Q 048292 50 TAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGI 105 (229)
Q Consensus 50 ~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~l 105 (229)
.....++.++-..+. .|....|- | + ...|+-+|..++++..+=+++
T Consensus 6 ~l~a~~~~~s~~ll~-~g~~~Ir~-~------~--~~~Hr~~Ml~a~~ls~lFlv~ 51 (133)
T PF04238_consen 6 DLNAVLNAISAVLLL-IGWYFIRR-G------R--IKLHRKLMLTAFVLSALFLVS 51 (133)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHh-C------C--HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655 66665542 1 1 368888888887776654444
No 74
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=49.97 E-value=1.2e+02 Score=23.62 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=33.5
Q ss_pred CcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 048292 149 CSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFR 207 (229)
Q Consensus 149 ~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~~~~~~~v~i~lev~~ 207 (229)
.++.+..+..+.||.++.+=+..+..+. .-+....+.+..+.+++++.+....
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~------~~~~~i~g~~~~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ------SILSIIIGLLLFLVGVIYIILGFFC 109 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6788899999999988766554444444 1222344445555666666666554
No 75
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=49.64 E-value=1.6e+02 Score=24.85 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292 95 GYILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ 158 (229)
Q Consensus 95 a~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~ 158 (229)
-.+..+.|+.+++....+. +....+.|.+-.-..++++.+..+-+++... +|+.. ..-|
T Consensus 33 ~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gs----Y~~pr-e~~W 107 (200)
T cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGS----YKKPR-ELTW 107 (200)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchh-HHHH
Confidence 3445567888877653321 1123467777777777777777777766422 12111 1347
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 048292 159 SMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 159 ~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
+.|.+++++.++..++|..+.-+.
T Consensus 108 ~~G~~l~~l~~~~af~GY~Lpw~q 131 (200)
T cd00284 108 VIGVILLLLTMATAFMGYVLPWGQ 131 (200)
T ss_pred HHHHHHHHHHHHHHHcccccCchh
Confidence 799999999999999998887543
No 76
>MTH00086 CYTB cytochrome b; Provisional
Probab=49.50 E-value=1.6e+02 Score=27.26 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=41.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.+.|..=.-..++++.+...-|++...- |+.. =++.|.+++++.+++.++|..+.-+.
T Consensus 69 R~~H~~gas~~f~~~ylHi~R~~~ygsy----~~~~---~W~~Gv~l~~l~m~~af~GYvLpw~q 126 (355)
T MTH00086 69 RIFHFNGASLFFIFLYLHIFKGLFMMSY----RLKK---VWISGLTIYLLVMMEAFMGYVLVWAQ 126 (355)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHccc----CCch---HHHHhHHHHHHHHHHHHhhhhcccCc
Confidence 4678777777777777777777764222 1111 27799999999999999999887544
No 77
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=49.08 E-value=1.6e+02 Score=24.59 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=25.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
...+|...+..-..+++++.+.+.+|+.+.
T Consensus 101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 101 AGKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999888888888999999999886
No 78
>PRK03735 cytochrome b6; Provisional
Probab=47.06 E-value=1.6e+02 Score=25.47 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=53.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhh------------hHhHHHHHHHHHHHHHHh----HhhhcC
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPL------------HMLCQISGYILGTVGWGI----GLWLGN 111 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~------------H~~lq~~a~il~i~G~~l----g~~~~~ 111 (229)
....=|.+...++.+.+-.|++.+-++.+-. ...|-.+ =+.++.-+.-+.++-..+ ++..+.
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~--~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gs 117 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDI--KNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGG 117 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455599999999999999999998776521 1111111 112222222222211211 222222
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 112 SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146 (229)
Q Consensus 112 ~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~ 146 (229)
..+. ...-=+.|++++++.......|+.-|...
T Consensus 118 Yk~p--re~~W~~Gv~l~~l~~~~af~GY~Lpw~q 150 (223)
T PRK03735 118 YKKP--RELNWVVGVLIFFVTVGLGFTGYLLPWDQ 150 (223)
T ss_pred HcCC--CCceeHHHHHHHHHHHHHHhccccCCccc
Confidence 1111 12335789999999999999999887654
No 79
>PLN02601 beta-carotene hydroxylase
Probab=46.92 E-value=1.1e+02 Score=27.43 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=41.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhc--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------h
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ--SHAEKWKWLYVAILALLAFLAAALEIFRWIVKS--------------K 213 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~--~~~~~~~~~~~~~~~~~~~v~i~lev~~w~~~~--------------r 213 (229)
|..+...=..--..+..+++.+++.=+... +.+-++.. +.+.+++.++.++.+|...|..-+ -
T Consensus 93 r~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~e-m~~~~al~lgtfvgMEf~Aw~aHKYvMHG~LW~lH~sHH 171 (303)
T PLN02601 93 RFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLE-MFGTFALSVGAAVGMEFWARWAHRALWHDSLWNMHESHH 171 (303)
T ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcC
Confidence 333443333334444455555555554332 22333443 444555566778889998874222 1
Q ss_pred ccCCccccCCCccc
Q 048292 214 LQLPIAFHNNNIYN 227 (229)
Q Consensus 214 ~~~~~~f~~~~~~~ 227 (229)
+...++||.||.|-
T Consensus 172 ~Pr~g~FE~NDlFa 185 (303)
T PLN02601 172 KPREGAFELNDVFA 185 (303)
T ss_pred CCCCCCcccccchh
Confidence 23345599999873
No 80
>MTH00046 CYTB cytochrome b; Validated
Probab=44.20 E-value=2e+02 Score=26.70 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=42.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.+.|..=.-..++++.++..-|++...-+ |+ . =|+.|.+++++.+++.++|..+.-+.
T Consensus 71 R~~H~~gAs~~f~~~ylHi~R~~~~gsY~---~~-~---~W~~Gv~l~~l~m~~aF~GYvLpwgq 128 (355)
T MTH00046 71 RYWHIWGVNVLFILLFIHMGRALYYSSYS---KK-G---VWNVGFILYLLVMVEAFLGYILPWHQ 128 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc-h---hHHHhHHHHHHHHHHHHeeeecCccc
Confidence 46788877788888888887777642211 11 1 26799999999999999998887544
No 81
>MTH00131 CYTB cytochrome b; Provisional
Probab=44.10 E-value=1.9e+02 Score=26.92 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=50.9
Q ss_pred HHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHH
Q 048292 97 ILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSM 160 (229)
Q Consensus 97 il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~ 160 (229)
+-.+.|+.++.....+. +....+.|.+=.-..++++.+...-|++...-+ + ++ =++.
T Consensus 43 ~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~ev~~G~~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~-~-~~-----~W~~ 115 (380)
T MTH00131 43 TQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYL-Y-KE-----TWNI 115 (380)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-ch-----HHHH
Confidence 34667888876643211 112346787777777777777777776542211 1 11 2679
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 048292 161 GYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 161 G~~~~~La~vni~~Gl~~~~~~ 182 (229)
|..++++.+...++|..+.-+.
T Consensus 116 G~~l~~l~~~~~f~Gy~Lpw~q 137 (380)
T MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQ 137 (380)
T ss_pred hHHHHHHHHHHHHHhccCcccc
Confidence 9999999999999999887544
No 82
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=44.05 E-value=1.8e+02 Score=23.88 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=14.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHH
Q 048292 49 RTAHGILNIIGWGILLPIGVIIA 71 (229)
Q Consensus 49 ~~~Hg~lM~iAw~iL~P~gil~a 71 (229)
+..| +++++++.+++..|....
T Consensus 8 R~~H-W~~a~~~i~l~~tG~~~~ 29 (211)
T TIGR02125 8 RLFH-WVRALAIFVLIVTGFYIA 29 (211)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHc
Confidence 3445 467777777777776553
No 83
>MTH00145 CYTB cytochrome b; Provisional
Probab=43.88 E-value=2.1e+02 Score=26.65 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHH
Q 048292 97 ILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSM 160 (229)
Q Consensus 97 il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~ 160 (229)
+-.+.|+.++.....+. +....+.|.+=.-..++++.+...-|++...-+ +. .=|+.
T Consensus 44 ~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~----~~---~~W~~ 116 (379)
T MTH00145 44 IQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYL----MQ---HTWNI 116 (379)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc----Cc---hHHHH
Confidence 44567887776643221 012245677766666666777776676642211 11 12679
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 048292 161 GYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 161 G~~~~~La~vni~~Gl~~~~~~ 182 (229)
|.+++++.+++.++|..+.-+.
T Consensus 117 Gv~l~~l~~~~af~GYvLpw~q 138 (379)
T MTH00145 117 GVTLLLLSMGTAFLGYVLPWGQ 138 (379)
T ss_pred hHHHHHHHHHHHHHhhccCccc
Confidence 9999999999999999887544
No 84
>PRK11513 cytochrome b561; Provisional
Probab=43.04 E-value=1.9e+02 Score=23.72 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=51.4
Q ss_pred cchhhhHhHHHHHHHHHHHHHHhHhhhcCCCC-CC-C--cchhhH-HHHHHHHHHHHHHHHhhhccCCCC----------
Q 048292 83 EWHPLHMLCQISGYILGTVGWGIGLWLGNSSK-HY-T--LKTHRI-LGILVFAFATIQILTSFLQPRREN---------- 147 (229)
Q Consensus 83 ~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~-~~-~--~~~H~~-lG~~v~~l~~lQ~l~G~~rp~~~~---------- 147 (229)
.++.+|..+.++-+++++.=++..+....... .. . ....+. .-..+.++.+.+|+.|+..-..++
T Consensus 40 ~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~~~~~G~~~~~fg~~l 119 (176)
T PRK11513 40 LINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTM 119 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCceeccccC
Confidence 44578998888777777766655554332111 11 0 111122 235777889999999986211110
Q ss_pred --------CCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292 148 --------ECSKWWEIFHQSMGYTVVALSIANIFQGI 176 (229)
Q Consensus 148 --------~~R~~~~~~H~~~G~~~~~La~vni~~Gl 176 (229)
......+.+|.+++++++.+...=+.-.+
T Consensus 120 p~~~~~~~~~~~~~~~~H~~~a~~l~~li~lHvaaAL 156 (176)
T PRK11513 120 PYASEANFERVDSLKSWHETLANLGYFVIGLHAAAAL 156 (176)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234556777777766555544443333
No 85
>MTH00016 CYTB cytochrome b; Validated
Probab=42.80 E-value=2.3e+02 Score=26.39 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
++-.+.|+.++.....+. +....+.|..-.-..++++.+...-|++...-+. ++ -+.
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~--~~-----~W~ 115 (378)
T MTH00016 43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFL--ME-----TWN 115 (378)
T ss_pred HHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--ch-----HHH
Confidence 344567888877643221 1123467887777777777777777776532221 11 367
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.|.+++++.+++.++|..+.-+.
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~q 138 (378)
T MTH00016 116 IGVILLLLTMATAFLGYVLPWGQ 138 (378)
T ss_pred hhHHHHHHHHHHHHhhhccchhh
Confidence 99999999999999999887543
No 86
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=42.51 E-value=2.3e+02 Score=25.02 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC--CchHHHHHHHHHHHHH
Q 048292 121 HRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA--EKWKWLYVAILALLAF 198 (229)
Q Consensus 121 H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~--~~~~~~~~~~~~~~~~ 198 (229)
|+.+|.++..+.+.-.+..+.+.+.+.+.+. ....+.++...|..+|......+ +++....=...+....
T Consensus 71 HR~~~~~~gl~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~ 142 (302)
T PF02628_consen 71 HRLLAGLVGLLILALAVWAWRKRRIRRRLRW--------LALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIF 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcchHH--------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhccCCccccCC
Q 048292 199 LAAALEIFRWIVKSKLQLPIAFHNN 223 (229)
Q Consensus 199 v~i~lev~~w~~~~r~~~~~~f~~~ 223 (229)
..+..-...-.++.+..++......
T Consensus 143 ~~l~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T PF02628_consen 143 ALLVWLALRARRPEESPRRLPRPRR 167 (302)
T ss_pred HHHHHHHHHhcCccccccccccchh
No 87
>MTH00100 CYTB cytochrome b; Provisional
Probab=41.65 E-value=2.5e+02 Score=26.15 Aligned_cols=80 Identities=9% Similarity=0.022 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
++-.+.|+.++.....+. +....+.|.+---..++++.+...-+++...-+ +.| + +.
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~-~~~---~---W~ 114 (379)
T MTH00100 42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYL-FLE---T---WN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-Cch---H---HH
Confidence 345667888877643221 112346777666666667777777676653222 111 2 77
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.|.+++++.+...++|..+.-+.
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q 137 (379)
T MTH00100 115 IGIILLFTVMATAFMGYVLPWGQ 137 (379)
T ss_pred HHHHHHHHHHHHHHHHhccChhh
Confidence 99999999999999998887543
No 88
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=40.60 E-value=1.5e+02 Score=21.85 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHhhh---c-CC-CCCCCcchhhHHHHHHHHHHHHHHH
Q 048292 91 CQISGYILGTVGWGIGLWL---G-NS-SKHYTLKTHRILGILVFAFATIQIL 137 (229)
Q Consensus 91 lq~~a~il~i~G~~lg~~~---~-~~-~~~~~~~~H~~lG~~v~~l~~lQ~l 137 (229)
+-.++.+.++.+...|+.. . ++ +.......|..+|..++.+..+-..
T Consensus 8 ll~~G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~l~~ 59 (104)
T PF09990_consen 8 LLVLGLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLLLAI 59 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555542 1 11 1223356888888888887766333
No 89
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=40.57 E-value=51 Score=24.44 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 048292 193 LALLAFLAAALEIFRWIVKSKLQLP 217 (229)
Q Consensus 193 ~~~~~~v~i~lev~~w~~~~r~~~~ 217 (229)
++.+++..+++-+.=|++++|.++|
T Consensus 40 I~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3444444555666667777776665
No 90
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=40.44 E-value=1.6e+02 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 048292 188 LYVAILALLAFLAAALEIFRWIVKS 212 (229)
Q Consensus 188 ~~~~~~~~~~~v~i~lev~~w~~~~ 212 (229)
++.++.+++.++..++-...+++.+
T Consensus 74 a~liv~~~~l~la~i~~~~~~~~l~ 98 (121)
T PF07332_consen 74 AFLIVAGLYLLLALILLLIGRRRLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3434444444444444444444444
No 91
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=40.39 E-value=3.5e+02 Score=26.09 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=35.7
Q ss_pred CCcchhHHhHHHHHHHHHHHH-HHHH---HHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHh
Q 048292 44 GRHHARTAHGILNIIGWGILL-PIGV---IIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGI 105 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~-P~gi---l~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~l 105 (229)
.-.+++..||..|...|..-. ..|. ++.|..+..+...|++=.+...+...+.++.+.++..
T Consensus 44 ~y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 44 LYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999998887632 2332 2334442110112333345666677777777766655
No 92
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=39.92 E-value=2e+02 Score=23.20 Aligned_cols=79 Identities=8% Similarity=0.134 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCC-------C-CCCcchhHhHHHHHH
Q 048292 90 LCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRR-------E-NECSKWWEIFHQSMG 161 (229)
Q Consensus 90 ~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~-------~-~~~R~~~~~~H~~~G 161 (229)
.......+++++|+.+-....... ....+.-...|-+++....+|..=|++.|+. . +...-.|+..=..+|
T Consensus 50 LFHa~~~~~~~~Gl~lL~r~~~r~-~~~~~~~~~~g~~l~G~G~Fnl~dG~vdH~lLgiH~Vr~~~~~~l~wDl~wl~~g 128 (143)
T PF10002_consen 50 LFHAFTWVATVAGLFLLWRADRRR-RRPWSGRRLWGGVLLGWGLFNLVDGVVDHKLLGIHHVRYPGPNPLPWDLGWLAFG 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-ccCccchhhHHHHHHHhhHHHHHHHHHHhhhhccceecccCCCccchhHHHHHHH
Confidence 344566777777777655332212 2223567888999998999999888765542 2 334455665444455
Q ss_pred HHHHHHHH
Q 048292 162 YTVVALSI 169 (229)
Q Consensus 162 ~~~~~La~ 169 (229)
..+++.|+
T Consensus 129 ~lll~~G~ 136 (143)
T PF10002_consen 129 ALLLLAGW 136 (143)
T ss_pred HHHHHHHH
Confidence 55555444
No 93
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=39.72 E-value=1e+02 Score=24.05 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=27.2
Q ss_pred hhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 048292 86 PLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILT 138 (229)
Q Consensus 86 ~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~ 138 (229)
..|.+++.+..++.+++++.++..+.++ +...|-.++..++...+.-.++
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~---p~p~~iffavcI~l~~~s~~lL 78 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDP---PKPLHIFFAVCILLICISAILL 78 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCC---CCceEEehHHHHHHHHHHHHhh
Confidence 4666666666666666666665544322 1234555555555554444444
No 94
>MTH00034 CYTB cytochrome b; Validated
Probab=38.87 E-value=2.8e+02 Score=25.83 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=52.6
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
++-.+.|+.++.....+. +....+.|.+-.-..++++.+...=+++...-+ +.. =++
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~----~~~---~W~ 114 (379)
T MTH00034 42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYV----NIE---TWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----Cch---HHH
Confidence 344678888877643221 012246788777777777777777776653222 111 266
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.|.+++++.+...++|..+.-+.
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q 137 (379)
T MTH00034 115 IGVILFLLTMLTAFVGYVLPWGQ 137 (379)
T ss_pred HhHHHHHHHHHHHHhhcCcchhh
Confidence 99999999999999999987543
No 95
>MTH00156 CYTB cytochrome b; Provisional
Probab=38.24 E-value=2.9e+02 Score=25.55 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=51.8
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
.+..+.|+.++.....+. +....+.|.+=--..++++.+...-+++...-+ |+ .-++
T Consensus 32 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~----~~W~ 104 (356)
T MTH00156 32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYK---LK----HTWM 104 (356)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc----chhH
Confidence 345667888877643211 112346777666666667777777676542221 11 1377
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.|.+++++.+...++|..+.-+.
T Consensus 105 ~G~~l~~~~~~~af~GY~Lpw~q 127 (356)
T MTH00156 105 SGVIILFLVMATAFLGYVLPWGQ 127 (356)
T ss_pred hhHHHHHHHHHHHHeeeeccccc
Confidence 99999999999999999987544
No 96
>MTH00224 CYTB cytochrome b; Provisional
Probab=37.53 E-value=2.7e+02 Score=26.01 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=53.5
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
++-.+.|+.++.....+. +....+.|.+-.-..++++.+...-|++...-+ + ++ + ++
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~ev~~Gw~iR~~H~~gas~~f~~~~lH~~R~~~~gsy~-~-~~--~---W~ 115 (379)
T MTH00224 43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFN-L-SE--T---WN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-C-HH--H---HH
Confidence 345678888877643211 112346788888888888888877777643222 1 11 2 66
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.|.+++++.+...++|..+.-+.
T Consensus 116 ~Gv~l~~l~~~~af~GY~Lpw~q 138 (379)
T MTH00224 116 IGVILFILTMATAFLGYVLPWGQ 138 (379)
T ss_pred HhHHHHHHHHHHHHeEeeecccc
Confidence 99999999999999999887544
No 97
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.40 E-value=3.7e+02 Score=29.48 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 048292 156 FHQSMGYTVVALS 168 (229)
Q Consensus 156 ~H~~~G~~~~~La 168 (229)
.-+++|.++++++
T Consensus 113 ~lRliGlLLLLLa 125 (1355)
T PRK10263 113 SLRIIGVLALILT 125 (1355)
T ss_pred HHHHHHHHHHHHH
Confidence 3355666665544
No 98
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=37.07 E-value=1.3e+02 Score=21.46 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=19.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhh
Q 048292 117 TLKTHRILGILVFAFATIQILTSFL 141 (229)
Q Consensus 117 ~~~~H~~lG~~v~~l~~lQ~l~G~~ 141 (229)
..+.|..+|+......++-.+-|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999888777777753
No 99
>MTH00074 CYTB cytochrome b; Provisional
Probab=37.06 E-value=2.8e+02 Score=25.85 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=52.6
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
++-.+.|+.++.....+. +......|.+=--..++++.+...=|++...-+ + ++ =++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~-~-~~-----~W~ 115 (380)
T MTH00074 43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYM-Y-KE-----TWN 115 (380)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-ch-----HHH
Confidence 344678887776543210 122356788777777777777777776542211 1 11 266
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHAE 183 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~~ 183 (229)
.|.+++++.+++.++|..+.-+..
T Consensus 116 ~G~~l~~l~~~~af~Gy~Lpw~q~ 139 (380)
T MTH00074 116 IGVILLFLVMATAFVGYVLPWGQM 139 (380)
T ss_pred hhHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999985443
No 100
>MTH00191 CYTB cytochrome b; Provisional
Probab=36.94 E-value=3.2e+02 Score=25.26 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292 95 GYILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ 158 (229)
Q Consensus 95 a~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~ 158 (229)
-.+..+.|+.++.....+. +....+.|.+---..++++.+...-+++...-+ +.| -+
T Consensus 38 ~~~q~itG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~~~gsy~-~~~------~W 110 (365)
T MTH00191 38 LIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYL-NKE------TW 110 (365)
T ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec-cch------hh
Confidence 3445678888876643221 112346788777777777777777776643222 111 37
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 048292 159 SMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 159 ~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
+.|.+++++.++..++|..+.-+.
T Consensus 111 ~~G~~l~~l~~~~~f~Gy~Lpw~q 134 (365)
T MTH00191 111 NVGVILLILSMATAFLGYVLPWGQ 134 (365)
T ss_pred HhhHHHHHHHHHHHHhhccccccc
Confidence 799999999999999999987543
No 101
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=36.79 E-value=2.6e+02 Score=23.72 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=15.7
Q ss_pred CcchhhhHhH--HHHHHHHHHHHHHh
Q 048292 82 DEWHPLHMLC--QISGYILGTVGWGI 105 (229)
Q Consensus 82 ~~Wf~~H~~l--q~~a~il~i~G~~l 105 (229)
...-++|++. ..+|+.+.++|..+
T Consensus 32 D~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 32 DVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred cHHHHhhccccchhhhHHHHHHHHHH
Confidence 4456899865 55666676666554
No 102
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.78 E-value=1.1e+02 Score=27.01 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhcc-CCCchHHHHHHHHHHHHHHHHH
Q 048292 165 VALSIANIFQGIIHQS-HAEKWKWLYVAILALLAFLAAA 202 (229)
Q Consensus 165 ~~La~vni~~Gl~~~~-~~~~~~~~~~~~~~~~~~v~i~ 202 (229)
+.+.+++.+.||.... +...|..+|.+++++++++.+.
T Consensus 269 lP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 269 IPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred HHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 3344455566666543 3356777777776666665554
No 103
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=36.39 E-value=2.4e+02 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 048292 124 LGILVFAFATIQILTSFLQPRR 145 (229)
Q Consensus 124 lG~~v~~l~~lQ~l~G~~rp~~ 145 (229)
-.....++.++=.+.|++-|.+
T Consensus 72 ~~~~~y~l~~iPll~g~l~p~~ 93 (182)
T PF09323_consen 72 KKLWSYFLFLIPLLIGFLFPPA 93 (182)
T ss_pred cccHHHHHHHHHHHHHHcCCCc
Confidence 3344444445555667776654
No 104
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=36.30 E-value=1e+02 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 154 EIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 154 ~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
+.+-+..|+..++.|++....++....
T Consensus 40 ~~l~r~~g~~~~~~~i~~li~~l~~~~ 66 (97)
T PF12650_consen 40 KKLCRFMGKFMLIIGIILLIGGLLSFF 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667799999999999999888885443
No 105
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=35.91 E-value=2e+02 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=13.5
Q ss_pred CCchHH-HHHHHHHHHHHHH---HHHHHHHHHHHhh
Q 048292 182 AEKWKW-LYVAILALLAFLA---AALEIFRWIVKSK 213 (229)
Q Consensus 182 ~~~~~~-~~~~~~~~~~~v~---i~lev~~w~~~~r 213 (229)
..+|.. ++.+..+++++.. ++-|..+.++-+|
T Consensus 43 ~~~wLg~~~~~l~~~~~l~~~~~~~rE~~~l~RL~~ 78 (289)
T TIGR01620 43 RSDWLGLTATIALIVIIFAGLALVGREWRRLMRLNA 78 (289)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345553 3334333333333 4445544444443
No 106
>MTH00022 CYTB cytochrome b; Validated
Probab=35.32 E-value=2.7e+02 Score=25.90 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=36.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.+.|.+=--..++++.+...-|++...-+ + ++ =+..|.+++++.+++.++|..+.-+.
T Consensus 79 R~~H~~gas~~f~~~~lHi~r~~~~gsy~-~-~~-----~W~~Gv~l~~l~~~~af~GyvLpw~q 136 (379)
T MTH00022 79 RYLHANGASLFFLCLYIHIGRGLYYGGYL-K-FH-----VWNVGVVIFLLTMATAFMGYVLPWGQ 136 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-C-cc-----hhhhcHHHHHHHHHHHHheeeecccc
Confidence 46787744455555666666666542211 1 11 16688888888888888888877543
No 107
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.14 E-value=1e+02 Score=27.60 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-CCCchHHHHHHHHHHHHHHHHH
Q 048292 160 MGYTVVALSIANIFQGIIHQS-HAEKWKWLYVAILALLAFLAAA 202 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~-~~~~~~~~~~~~~~~~~~v~i~ 202 (229)
+..+.+.+.+++.+.||...+ +...|..+|.+++++++++.+.
T Consensus 270 lt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~ 313 (324)
T PRK09546 270 MAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG 313 (324)
T ss_pred HHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH
Confidence 334445566677778887653 3356666776665555554443
No 108
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.11 E-value=2.1e+02 Score=21.64 Aligned_cols=31 Identities=26% Similarity=0.752 Sum_probs=24.2
Q ss_pred CCcchhHHhHHHHHHHHHHHHH--HHHHHHHHh
Q 048292 44 GRHHARTAHGILNIIGWGILLP--IGVIIARYL 74 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~P--~gil~aR~~ 74 (229)
+.+.+...=|.+-.++|-+..| +|+...|++
T Consensus 34 ~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WL 66 (100)
T TIGR02230 34 ATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWL 66 (100)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888899999999998 566777776
No 109
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=33.81 E-value=1.6e+02 Score=20.37 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=34.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 048292 150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFR 207 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~~~~~~~v~i~lev~~ 207 (229)
|+.++.+=+++..+++++|.+.+-.+..+.+ .....+..-+.+.++..+.|+.+
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~it~F~~n----~~~g~i~i~I~l~l~G~isE~i~ 57 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFINITAFLIN----QIAGLISIGITLFLAGLISEFIS 57 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777778999999999999988887774 22233333333444445556554
No 110
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=32.96 E-value=1.2e+02 Score=20.00 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHH
Q 048292 120 THRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIA 170 (229)
Q Consensus 120 ~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~v 170 (229)
.-..+|+..++-...|...++-+ +++ ...++.+...|...+++|+.
T Consensus 24 ~~~i~g~~~i~~Gi~~l~~~~~~-~~~----~~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 24 LAIILGIWLIISGIFQLISAFRR-RKG----SKGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccc----chhhHHHHHHHHHHHHHHHH
Confidence 44666776666677777655552 222 12344666677766666654
No 111
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=32.77 E-value=2.4e+02 Score=22.01 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCcchhhhHhHHHHH---HHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHH-----HHHHhhhccCCCCCCcch
Q 048292 81 YDEWHPLHMLCQISG---YILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATI-----QILTSFLQPRRENECSKW 152 (229)
Q Consensus 81 ~~~Wf~~H~~lq~~a---~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~l-----Q~l~G~~rp~~~~~~R~~ 152 (229)
+..|-+.|+.-|... .++.+.|....+. +++ ..-..++++...+.++ +.+.|+.. .++-.-|..
T Consensus 28 ~g~~M~Ch~tg~a~~~ig~vi~~~~li~~~~--k~~-----~~~~gl~i~~i~~gil~~lip~~lIG~C~-~~~M~Ch~~ 99 (124)
T PF14387_consen 28 DGGHMKCHWTGQAVTGIGAVIAVLSLIMLFV--KNK-----KARIGLSIANIALGILVILIPTVLIGVCM-MPTMHCHTV 99 (124)
T ss_pred CCCeeeehhHHHHHHHHHHHHHHHHHHHHHh--CcH-----HHHHHHHHHHHHHHHHHHHhhcccccCCC-CCCCChhhh
Confidence 456899999887743 3333334333322 211 1222233333332222 22334432 222233444
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 048292 153 WEIFHQSMGYTVVALSIANIF 173 (229)
Q Consensus 153 ~~~~H~~~G~~~~~La~vni~ 173 (229)
..+.=+++|-++.+++.++++
T Consensus 100 T~p~v~v~~~l~iv~~~~~~f 120 (124)
T PF14387_consen 100 TKPAVRVLGGLIIVIGIIYLF 120 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666665543
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.61 E-value=2.4e+02 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048292 156 FHQSMGYTVVALSIANIFQG 175 (229)
Q Consensus 156 ~H~~~G~~~~~La~vni~~G 175 (229)
.++..+.+.+++|++=+..|
T Consensus 3 ~~~i~~i~~iilgilli~~g 22 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASG 22 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555433333
No 113
>COG3658 Cytochrome b [Energy production and conversion]
Probab=32.22 E-value=3e+02 Score=22.97 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhccCC-------C------------CCCcchhHhHHHHHHHHHHHHH----HHHHHHH
Q 048292 119 KTHRILGILVFAFATIQILTSFLQPRR-------E------------NECSKWWEIFHQSMGYTVVALS----IANIFQG 175 (229)
Q Consensus 119 ~~H~~lG~~v~~l~~lQ~l~G~~rp~~-------~------------~~~R~~~~~~H~~~G~~~~~La----~vni~~G 175 (229)
.+|.+.|++++.+..+-...|++-|.. . -+.|.-....|--+|-+++..- .+++.+|
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~~ARf~af~pspa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~~l~~~v~TG 114 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVPSPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWALLLAQVGTG 114 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccchhhhhccCCChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999865431 0 1344555567777776654433 3444556
Q ss_pred hh
Q 048292 176 II 177 (229)
Q Consensus 176 l~ 177 (229)
..
T Consensus 115 ~l 116 (192)
T COG3658 115 WL 116 (192)
T ss_pred hh
Confidence 43
No 114
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=32.20 E-value=5.3e+02 Score=25.84 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=41.5
Q ss_pred cchhHHhHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhh
Q 048292 46 HHARTAHGILNIIGWG-ILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLW 108 (229)
Q Consensus 46 ~~~~~~Hg~lM~iAw~-iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~ 108 (229)
+..+..|+.+..++.. +.+|.+.-++-..++- .+..|-+.=+.+..+|+++..+|+++|-+
T Consensus 166 ~~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~--~~~~~~~~~~~~~~~g~~~LT~GI~~G~~ 227 (628)
T TIGR03145 166 DIGLIFHPPLLYLGYVGFAVNFAMALAALISGH--LDAAVARWSRPWVLLSWVFLTGGIMLGSW 227 (628)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999996 4455554443333321 12356666667788999999999999765
No 115
>MTH00033 CYTB cytochrome b; Provisional
Probab=32.17 E-value=4.3e+02 Score=24.73 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=38.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.+.|.+=.-..++++.+...-|++...-+ |+ .=+..|.+++++.+++.++|..+.-+.
T Consensus 77 R~~H~~gAs~~f~~~ylHi~R~~~~gsY~---r~----~~W~~Gv~ll~l~m~~aF~GYvLpw~q 134 (383)
T MTH00033 77 RYVHANGASLFFICVYCHIGRGLYYGGYS---RV----LTWIVGVLIFFIMMLTAFIGYVLPWGQ 134 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccc---Ch----HHHHHhHHHHHHHHHHHHhhhcccccc
Confidence 35666666666666666666666642211 11 236689999999999999998887544
No 116
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=31.84 E-value=1.9e+02 Score=20.85 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--------CCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 048292 160 MGYTVVALSIANIFQGIIHQS--------HAEK--WKWLYVAILALLAFLAAALEIFRWIVKSKLQLPIAFH 221 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~--------~~~~--~~~~~~~~~~~~~~v~i~lev~~w~~~~r~~~~~~f~ 221 (229)
+...+++.=.+-...|+.+.. ++.+ |.-...+++.....+..+....-.+-++|++..+.|+
T Consensus 5 iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~pRF~ 76 (77)
T PF11118_consen 5 IALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQPRFR 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhheeeccccccchhhc
Confidence 344444444444455655542 2222 3334445555555555444444445555566555565
No 117
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=31.81 E-value=4e+02 Score=24.34 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHHHHHHHH-HHHHHHhhh
Q 048292 90 LCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGILVFAFA-TIQILTSFL 141 (229)
Q Consensus 90 ~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~~v~~l~-~lQ~l~G~~ 141 (229)
..|.+|+++.++|+++.......+ ++.....|+++|=++.++. .++.+--++
T Consensus 133 ~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~ 186 (334)
T PF06027_consen 133 WFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVL 186 (334)
T ss_pred HHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 357799999999987754432111 1112457899998777643 444443344
No 118
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=31.63 E-value=74 Score=28.60 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=24.9
Q ss_pred HHHHHHHHHH---HHHHHHHhhhcc-CCCchHHHHHHHHHHHHHHHHHHH
Q 048292 159 SMGYTVVALS---IANIFQGIIHQS-HAEKWKWLYVAILALLAFLAAALE 204 (229)
Q Consensus 159 ~~G~~~~~La---~vni~~Gl~~~~-~~~~~~~~~~~~~~~~~~v~i~le 204 (229)
.+..++.++. +++.+.||.... +...|..+|..++++++++++++-
T Consensus 264 ~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~ 313 (322)
T COG0598 264 ILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLY 313 (322)
T ss_pred HHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHH
Confidence 3444444444 444455565554 335677677776666666555543
No 119
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=29.45 E-value=3.2e+02 Score=22.99 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=54.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCC-----------CCC-Ccc--hhhhHhHHHHHHHHHHHHHHhHhhhcCCC
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFP-----------IEY-DEW--HPLHMLCQISGYILGTVGWGIGLWLGNSS 113 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~-----------~~~-~~W--f~~H~~lq~~a~il~i~G~~lg~~~~~~~ 113 (229)
....=|.+...++.+..-.|++.+-++.+-+ .+. --| -.+|...-..-+++..+=+.=++..+...
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~ 100 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK 100 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455688999999999999999998887531 000 012 23343221111111111111122222211
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 114 KHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146 (229)
Q Consensus 114 ~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~ 146 (229)
+ +...-=+.|++++.+.......|+.-|...
T Consensus 101 ~--pre~~W~~G~~l~~l~~~~af~GY~Lpw~q 131 (200)
T cd00284 101 K--PRELTWVIGVILLLLTMATAFMGYVLPWGQ 131 (200)
T ss_pred c--hhHHHHHHHHHHHHHHHHHHHcccccCchh
Confidence 1 123456789999999999999999877543
No 120
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=29.30 E-value=4.3e+02 Score=23.86 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=6.6
Q ss_pred cchhhHHHHHHHHH
Q 048292 118 LKTHRILGILVFAF 131 (229)
Q Consensus 118 ~~~H~~lG~~v~~l 131 (229)
+..|-.--.+.+.+
T Consensus 53 Da~Hml~D~~al~l 66 (296)
T COG1230 53 DALHMLSDALALLL 66 (296)
T ss_pred hHHHHHHHHHHHHH
Confidence 34565544444433
No 121
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=29.07 E-value=1.8e+02 Score=19.41 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCcchhHhHHHHHHHHHHHHHHH
Q 048292 148 ECSKWWEIFHQSMGYTVVALSIA 170 (229)
Q Consensus 148 ~~R~~~~~~H~~~G~~~~~La~v 170 (229)
..|..|+..|.+.|+...++..+
T Consensus 36 ~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 36 LNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888887777654
No 122
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=28.85 E-value=1.7e+02 Score=21.96 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=32.2
Q ss_pred hhHhHHHHHHHHHHHHHHhHhhh-cCCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 048292 87 LHMLCQISGYILGTVGWGIGLWL-GNSSKHYTLKTHRILGILVFAFATIQILTSF 140 (229)
Q Consensus 87 ~H~~lq~~a~il~i~G~~lg~~~-~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~ 140 (229)
.=..+..++-++.++|-+-.+.. .+++++.....=.|+|-+++.....+.+=.|
T Consensus 43 ~~~l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~l~af 97 (98)
T PF13572_consen 43 VTKLMYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATVLPAF 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555554443332 3334455567888999999988877776443
No 123
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=28.34 E-value=2.4e+02 Score=20.61 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHHh--hhccCCCCCCcchhHhHHHHHHH
Q 048292 119 KTHRILGILVFAFATIQILTS--FLQPRRENECSKWWEIFHQSMGY 162 (229)
Q Consensus 119 ~~H~~lG~~v~~l~~lQ~l~G--~~rp~~~~~~R~~~~~~H~~~G~ 162 (229)
+.-...|++.+.++++-.+.. .+|.+ +.-+.|.+.|.....
T Consensus 77 ~~~~~~G~~a~~~l~~l~~tS~~~~R~r---~~ye~f~~~H~~~~~ 119 (125)
T PF01794_consen 77 GPYNLTGIIALLLLLILAVTSFPWIRRR---RNYEIFYYLHILFYI 119 (125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHH
Confidence 344456766666655555544 33311 123567777777433
No 124
>COG3556 Predicted membrane protein [Function unknown]
Probab=27.32 E-value=3e+02 Score=22.07 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=51.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc--hhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCC--CcchhhH
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEW--HPLHMLCQISGYILGTVGWGIGLWLGNSSKHY--TLKTHRI 123 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~W--f~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~--~~~~H~~ 123 (229)
+-..|=..-+..++++.....+ .|.-+.....| -..-+.-..++....+.|+.-.++.+++.+.+ +.-.|.+
T Consensus 7 lAylHyLsif~l~g~lvae~vl----lr~dl~~e~~krLa~~D~~YGl~A~aVlisGi~rv~~~~KG~dfYv~n~~F~aK 82 (150)
T COG3556 7 LAYLHYLSIFSLFGILVAEAVL----LRGDLPLETLKRLAIIDRVYGLSASAVLISGIARVFWSGKGVDFYVHNWMFHAK 82 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----hCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccceeEEEechHHHHH
Confidence 3456666666667776655433 44322122222 12233445566677777887777765543322 2347999
Q ss_pred HHHHHHH-HHHHHHHHhhh
Q 048292 124 LGILVFA-FATIQILTSFL 141 (229)
Q Consensus 124 lG~~v~~-l~~lQ~l~G~~ 141 (229)
+|+.+++ ++-+-|...++
T Consensus 83 mglFvlvgLlSi~PTv~fl 101 (150)
T COG3556 83 MGLFVLVGLLSIIPTVRFL 101 (150)
T ss_pred HHHHHHHHHHhccchhHHH
Confidence 9998887 45555665554
No 125
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=27.18 E-value=2.1e+02 Score=23.55 Aligned_cols=58 Identities=19% Similarity=0.026 Sum_probs=41.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCcchhhhHhHHHHHHHHHHHHHHh
Q 048292 47 HARTAHGILNIIGWGILLPIGVIIARY-LRRFPIEYDEWHPLHMLCQISGYILGTVGWGI 105 (229)
Q Consensus 47 ~~~~~Hg~lM~iAw~iL~P~gil~aR~-~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~l 105 (229)
..+++=.++|.+++.++.-...+..-. .++- ..++..+++...+|.++.++.++|..+
T Consensus 68 ~~Wkaa~~~~~~g~~Ll~~~~~~~L~~~c~~~-~~~~sv~~i~g~~Q~~A~l~~~~g~~~ 126 (181)
T PF10242_consen 68 SAWKAAAFFVGIGCVLLLLIALLSLFSCCFRS-ICSRSVFKICGWLQFVAGLCLLLGCLL 126 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCceEeeechHHHHHHHHHHHHhhee
Confidence 357888999999998876665544322 2211 134667889999999999999888866
No 126
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=27.04 E-value=4.2e+02 Score=23.03 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHH
Q 048292 51 AHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFA 130 (229)
Q Consensus 51 ~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~ 130 (229)
..++-|.+|..+.+-.+.......|++ -+.+ +++..+++.++.++...-.-- +.+....|+.+|+.+=.
T Consensus 36 ~nalgmGlA~~~Vl~~S~~~~sllr~~---i~~~------lRi~v~IlvIA~~V~~v~~~L--~a~~p~l~~~LGiflpL 104 (231)
T PRK12405 36 TNALGLGLATTLVLVCSNLTVSLLRKW---IPKE------IRIPIFVMIIASFVTVVQLLM--NAYAYGLYQSLGIFIPL 104 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHH------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhH
Confidence 456778888776666555555555543 1112 556666666666655433210 01123567777776554
Q ss_pred H
Q 048292 131 F 131 (229)
Q Consensus 131 l 131 (229)
+
T Consensus 105 I 105 (231)
T PRK12405 105 I 105 (231)
T ss_pred H
Confidence 3
No 127
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=25.64 E-value=4.9e+02 Score=24.68 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=30.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhccCCCCCC--cchhHhHHHHHHHHHHHHHHHHH
Q 048292 119 KTHRILGILVFAFATIQILTSFLQPRRENEC--SKWWEIFHQSMGYTVVALSIANI 172 (229)
Q Consensus 119 ~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~--R~~~~~~H~~~G~~~~~La~vni 172 (229)
..=+.+|.+.++++.+|.++..=.|..+... =...-.+|+|.|.++++|++.-=
T Consensus 39 ~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~ 94 (438)
T COG4097 39 EFSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHN 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4456667666666666666654444333211 11223477777777777776643
No 128
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=25.10 E-value=2.3e+02 Score=19.29 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=8.1
Q ss_pred cchhHhHHHHHHHHHHHHH
Q 048292 150 SKWWEIFHQSMGYTVVALS 168 (229)
Q Consensus 150 R~~~~~~H~~~G~~~~~La 168 (229)
|....|..-.+..+...++
T Consensus 8 RT~LaW~Rt~l~l~~~g~~ 26 (73)
T PF02656_consen 8 RTFLAWIRTALALVGVGLA 26 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 129
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=24.55 E-value=2.4e+02 Score=19.76 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 048292 198 FLAAALEIFRWIVKSK 213 (229)
Q Consensus 198 ~v~i~lev~~w~~~~r 213 (229)
++-+..-+++|.+..|
T Consensus 46 vlQig~~v~k~v~~~k 61 (66)
T PF10746_consen 46 VLQIGYLVWKKVRDWK 61 (66)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554433
No 130
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.65 E-value=4.8e+02 Score=27.47 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=16.2
Q ss_pred CCcchhHhHHHHHHHHHHHHHHHHH
Q 048292 148 ECSKWWEIFHQSMGYTVVALSIANI 172 (229)
Q Consensus 148 ~~R~~~~~~H~~~G~~~~~La~vni 172 (229)
..|+.|+++|++++.+..++..+-+
T Consensus 490 ~~RP~fk~~~~~~sllG~l~c~~lm 514 (953)
T TIGR00930 490 GWRPRFKYYHWWLSLLGASLCCAIM 514 (953)
T ss_pred CCCCccccchHHHHHHHHHHHHHHH
Confidence 3577888888887765555554433
No 131
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.26 E-value=5.9e+02 Score=23.38 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhh
Q 048292 51 AHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLW 108 (229)
Q Consensus 51 ~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~ 108 (229)
-+..+.-.||-+++=.|+....+.++ .+.+...|..+..++.+..+.++.....
T Consensus 187 ~~w~FNP~aWQllFv~G~~~g~~~~~----~~~~~~~~~~l~~la~~~~l~~~~~~~~ 240 (358)
T PF10129_consen 187 GGWFFNPFAWQLLFVLGLWLGWGWRR----GRRFLPRRRWLVWLAVAYVLFAFFWRLF 240 (358)
T ss_pred cccccChHHHHHHHHHHHHHhccccc----cccccccchHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999888766553 2345678888888877777666655443
No 132
>PRK05415 hypothetical protein; Provisional
Probab=22.91 E-value=4.3e+02 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=13.4
Q ss_pred CchHH-HHHHHHHHHHH---HHHHHHHHHHHHHhh
Q 048292 183 EKWKW-LYVAILALLAF---LAAALEIFRWIVKSK 213 (229)
Q Consensus 183 ~~~~~-~~~~~~~~~~~---v~i~lev~~w~~~~r 213 (229)
..|.. ++.++.+++++ ..++-|.++.++.+|
T Consensus 96 ~~wlg~~~~~~~~~~~~~~~~~~~rE~~~l~rL~~ 130 (341)
T PRK05415 96 SDWLGLGAAVVGALIVLAGLGIVVREWRRLRRLRQ 130 (341)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45543 34444443333 334445444444433
No 133
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=22.54 E-value=94 Score=29.65 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.2
Q ss_pred CCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292 147 NECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 147 ~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~ 179 (229)
+++|+.|.+.|.|.|.++..+=++-+.+|..+.
T Consensus 3 s~~~~~wr~lHfyaGL~v~pfl~ll~lTG~~~l 35 (442)
T COG3182 3 SRYRRVWRWLHFYAGLLVAPFLFLLALTGSLLL 35 (442)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 457889999999999998888888888886554
No 134
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=22.43 E-value=1.5e+02 Score=26.08 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhh
Q 048292 94 SGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFL 141 (229)
Q Consensus 94 ~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~ 141 (229)
+|+-+.+++.++......+-..+. +-..|+++++.++.++-.+-|++
T Consensus 196 ~GfGLsLikwilIv~~sd~f~~y~-n~q~wLwwi~~vlG~ll~lr~~i 242 (262)
T KOG4812|consen 196 SGFGLSLIKWILIVRFSDDFESYF-NGQYWLWWIFLVLGLLLFLRGFI 242 (262)
T ss_pred hccchhhheeeEEeeccccccccc-ccchHHHHHHHHHHHHHHHHHHH
Confidence 445555555444433222212332 34789999999988888877764
No 135
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=22.17 E-value=96 Score=25.27 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=8.1
Q ss_pred HHHHHHhhccCCccccCCCc
Q 048292 206 FRWIVKSKLQLPIAFHNNNI 225 (229)
Q Consensus 206 ~~w~~~~r~~~~~~f~~~~~ 225 (229)
+-+.+++|++. -+|+.-||
T Consensus 50 ~lcssRKkKaa-AAi~eedi 68 (189)
T PF05568_consen 50 YLCSSRKKKAA-AAIEEEDI 68 (189)
T ss_pred HHHhhhhHHHH-hhhhhhcc
Confidence 33334444332 44555544
No 136
>MTH00119 CYTB cytochrome b; Provisional
Probab=22.03 E-value=6.4e+02 Score=23.39 Aligned_cols=80 Identities=11% Similarity=0.011 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHhhhcCCC----------------CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSS----------------KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~----------------~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
.+..+.|+.++.....+. +....+.|.+---..++++.+...-+++... +|+ ..-++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~gs----y~~---~~~W~ 115 (380)
T MTH00119 43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGS----YLY---KETWN 115 (380)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhce----ecc---cchhh
Confidence 345678888876543211 1123467887666777777777776766432 221 12478
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 048292 160 MGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.|.+++++.+...++|..+.-+.
T Consensus 116 ~Gv~l~~l~~~~~f~Gy~Lpw~q 138 (380)
T MTH00119 116 TGVILLLLLMATAFVGYVLPWGQ 138 (380)
T ss_pred hhhHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999887543
No 137
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=21.98 E-value=95 Score=25.19 Aligned_cols=41 Identities=7% Similarity=0.036 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCccc
Q 048292 187 WLYVAILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIYN 227 (229)
Q Consensus 187 ~~~~~~~~~~~~v~i~lev~~w~~~~r~~~~~~f~~~~~~~ 227 (229)
++++++.+..+++.+.+-+-...+.+|.++...++-++|.+
T Consensus 66 IVfgiVfimgvva~i~icvCmc~kn~rgsRvgv~~tt~in~ 106 (155)
T PF10873_consen 66 IVFGIVFIMGVVAGIAICVCMCMKNSRGSRVGVIRTTHINA 106 (155)
T ss_pred eehhhHHHHHHHHHHHHHHhhhhhcCCCccccceecccccc
Confidence 34555544455555666666777777777777787777654
No 138
>COG4244 Predicted membrane protein [Function unknown]
Probab=21.89 E-value=4.5e+02 Score=21.58 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=19.9
Q ss_pred CcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 149 CSKWWEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 149 ~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
.+..-+|-|........++++.|........+
T Consensus 82 a~~~a~wh~~lG~il~~~la~~~~~r~~~~~~ 113 (160)
T COG4244 82 AKQAAEWHHVLGNILLIVLAILTAWRYVHRND 113 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455655555556667788888888444443
No 139
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=21.88 E-value=3.8e+02 Score=21.54 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 048292 187 WLYVAILALL 196 (229)
Q Consensus 187 ~~~~~~~~~~ 196 (229)
.+|..++++.
T Consensus 133 lGyS~wL~v~ 142 (163)
T PF06653_consen 133 LGYSAWLCVA 142 (163)
T ss_pred eehHHHHHHH
Confidence 4455554433
No 140
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.78 E-value=1.6e+02 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhh
Q 048292 201 AALEIFRWIVKSK 213 (229)
Q Consensus 201 i~lev~~w~~~~r 213 (229)
..+-.++|..++|
T Consensus 26 a~~iYRKw~aRkr 38 (43)
T PF08114_consen 26 ALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3455678887777
No 141
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.61 E-value=3.4e+02 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 153 WEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 153 ~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
.+..|+..|+.+.+..++.+..|+.-..
T Consensus 7 t~~ah~~~~~~V~l~~~~~vt~~l~~Le 34 (95)
T KOG4841|consen 7 TKLAHWLWGLAVLLSTWVAVTTGLLGLE 34 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 3568999999999999988887765543
No 142
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=21.55 E-value=6.3e+02 Score=24.08 Aligned_cols=14 Identities=0% Similarity=0.007 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 048292 162 YTVVALSIANIFQG 175 (229)
Q Consensus 162 ~~~~~La~vni~~G 175 (229)
.++-.++.+-+..+
T Consensus 406 ~i~~~~~~~~~~~~ 419 (507)
T TIGR00910 406 LIIAGIGFLLSIFA 419 (507)
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444333
No 143
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=21.54 E-value=8e+02 Score=24.30 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhh
Q 048292 46 HHARTAHGILNIIGWGILLPIGVIIARYL-RRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLW 108 (229)
Q Consensus 46 ~~~~~~Hg~lM~iAw~iL~P~gil~aR~~-k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~ 108 (229)
+..+..|+-+..++...+.-.......++ +. ..+..|-+.=+....+|+++..+|+++|-.
T Consensus 114 ~~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~--~~~~~~~~~~~~~~~~g~~flt~Gi~~G~~ 175 (576)
T TIGR00353 114 DPGLIFHPPLLYMGYVGFSVAFAFALASLLRG--ELDSACARICRPWTLAAWSFLTLGIVLGSW 175 (576)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999998866554443443343 32 113457666677788999999999999766
No 144
>PF15102 TMEM154: TMEM154 protein family
Probab=21.38 E-value=42 Score=27.18 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=5.6
Q ss_pred HHHHHhhccCCc
Q 048292 207 RWIVKSKLQLPI 218 (229)
Q Consensus 207 ~w~~~~r~~~~~ 218 (229)
..+|+|.|+.|.
T Consensus 81 ~~kRkr~K~~~s 92 (146)
T PF15102_consen 81 YYKRKRTKQEPS 92 (146)
T ss_pred EEeecccCCCCc
Confidence 334444455543
No 145
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=21.29 E-value=3.5e+02 Score=20.02 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHhhhcCCCCCCC-----cchhhHHHHHHHHHHHHHHHHhhhc-cCCCCC--C----cchhHhHHHHHHHH
Q 048292 96 YILGTVGWGIGLWLGNSSKHYT-----LKTHRILGILVFAFATIQILTSFLQ-PRRENE--C----SKWWEIFHQSMGYT 163 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~~~~~-----~~~H~~lG~~v~~l~~lQ~l~G~~r-p~~~~~--~----R~~~~~~H~~~G~~ 163 (229)
+.+.+.+..+|+...+++.+.. ...=.++|++...-.++|.+--.+. +.++.+ . +.-....++++...
T Consensus 14 l~lvl~~pi~Gl~l~~~g~~L~~~~r~~~~~~~V~~~~~~~Fl~qL~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 93 (101)
T PF11862_consen 14 LALVLFGPIVGLKLDNQGGQLVLEPRWGLLAWWVAVAAAGRFLFQLFRPWLARRFKKAPSGVPVLPPDGLPSLQRWIIPL 93 (101)
T ss_pred HHHHHHHHheEEEEecCCcEEEEEecchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcCCCccccchHHHHHHH
Confidence 3444556666776553332221 1223466666666677777643332 222111 1 11345678888888
Q ss_pred HHHHHHH
Q 048292 164 VVALSIA 170 (229)
Q Consensus 164 ~~~La~v 170 (229)
+++++++
T Consensus 94 llv~Alv 100 (101)
T PF11862_consen 94 LLVVALV 100 (101)
T ss_pred HHHHHHH
Confidence 8877753
No 146
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=21.26 E-value=3.8e+02 Score=20.77 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 048292 122 RILGILVFAFATIQILTSF 140 (229)
Q Consensus 122 ~~lG~~v~~l~~lQ~l~G~ 140 (229)
..+-++.++...++.+.|+
T Consensus 4 ~~~r~~~~~~~~~~i~~gi 22 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGI 22 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555544
No 147
>PHA03283 envelope glycoprotein E; Provisional
Probab=21.18 E-value=92 Score=30.36 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=25.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCccccCCC
Q 048292 183 EKWKWLYVAILALLAFLAAALEIFRWIV-KSKLQLPIAFHNNN 224 (229)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~i~lev~~w~~-~~r~~~~~~f~~~~ 224 (229)
+.|..+..++.++.++..+.+.++.+.+ ++++.+| +|..|
T Consensus 397 ~~~l~~~~~~~~~~~~~~~~l~vw~c~~~r~~~~~~--y~iln 437 (542)
T PHA03283 397 RHYLAFLLAIICTCAALLVALVVWGCILYRRSNRKP--YEVLN 437 (542)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhheeeehhhcCCc--ccccC
Confidence 3455555566666666677778888777 5557776 66655
No 148
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=21.01 E-value=3.3e+02 Score=20.32 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=30.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh-hccCCCCCCcchhH-hHHHHHHHHHHHHHH
Q 048292 118 LKTHRILGILVFAFATIQILTSF-LQPRRENECSKWWE-IFHQSMGYTVVALSI 169 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~-~rp~~~~~~R~~~~-~~H~~~G~~~~~La~ 169 (229)
.+...+.|..++-.++.-.+-|+ ++|++ ..|+ .++-++|+.+++.+.
T Consensus 40 g~~~~~~~~lliwavc~g~IhGVGF~Pr~-----~~Wq~lF~P~~a~~iLi~~l 88 (93)
T TIGR02112 40 GGFNAVLALLMIWAVCILWIHGVGFRPRS-----TLWQLLFSPILGYIILIYLL 88 (93)
T ss_pred CCccHHHHHHHHHHHHHHHHhhccccchH-----HHHHHHHhhHHHHHHHHHHH
Confidence 45667888888888888777777 56543 3333 345566666655443
No 149
>PRK10588 hypothetical protein; Provisional
Probab=20.98 E-value=2.8e+02 Score=20.83 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=30.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh-hccCCCCCCcchhH-hHHHHHHHHHHHHHH
Q 048292 118 LKTHRILGILVFAFATIQILTSF-LQPRRENECSKWWE-IFHQSMGYTVVALSI 169 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~-~rp~~~~~~R~~~~-~~H~~~G~~~~~La~ 169 (229)
.+...+.|..++-..+.-.+-|+ ++|+ +..|+ ..+-++|+.+++.+.
T Consensus 44 ~~~~~~~~~lliwavc~g~IhGVGF~Pr-----~~~Wq~lFsP~~a~~iL~~g~ 92 (97)
T PRK10588 44 SSLEIWHGLLLMWAVCAGVIHGVGFRPQ-----KVLWQGIFCPLPADIVLIVGL 92 (97)
T ss_pred CCccHHHHHHHHHHHHHHHhhhcccchh-----HHHHHHHHhhHHHHHHHHHHH
Confidence 45677888888887777777776 4543 33443 345667777766553
No 150
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=20.79 E-value=1.8e+02 Score=16.42 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhcc
Q 048292 203 LEIFRWIVKSKLQ 215 (229)
Q Consensus 203 lev~~w~~~~r~~ 215 (229)
=.+.+|.+++|||
T Consensus 14 P~lISWIK~kr~~ 26 (26)
T PF01372_consen 14 PTLISWIKNKRQQ 26 (26)
T ss_dssp HHHHHHHHHHHH-
T ss_pred hHHHHHHHHHhcC
Confidence 4567899999875
No 151
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=20.79 E-value=5.7e+02 Score=24.23 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhccCC
Q 048292 128 VFAFATIQILTSFLQPRR 145 (229)
Q Consensus 128 v~~l~~lQ~l~G~~rp~~ 145 (229)
.++..++|.++-.+-|.+
T Consensus 74 ~~~~~~~qa~l~~~lPG~ 91 (432)
T PF01222_consen 74 YLAWFAFQALLYLVLPGK 91 (432)
T ss_pred HHHHHHHHHHHHhcCCce
Confidence 334667788887776654
No 152
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=20.26 E-value=1.3e+02 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 048292 52 HGILNIIGWGILLPIGVIIARY 73 (229)
Q Consensus 52 Hg~lM~iAw~iL~P~gil~aR~ 73 (229)
=-.+|+++|+++-|+|..+.=|
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999876544
No 153
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=20.19 E-value=5.5e+02 Score=26.80 Aligned_cols=16 Identities=13% Similarity=0.409 Sum_probs=13.0
Q ss_pred CCCcchhHhHHHHHHH
Q 048292 147 NECSKWWEIFHQSMGY 162 (229)
Q Consensus 147 ~~~R~~~~~~H~~~G~ 162 (229)
-++|+.|+++||.+-.
T Consensus 597 PnWRPRfkyyHW~LSf 612 (1075)
T KOG2082|consen 597 PNWRPRFKYYHWSLSF 612 (1075)
T ss_pred CCCCccchhhhhHHHH
Confidence 3689999999997654
No 154
>MTH00053 CYTB cytochrome b; Provisional
Probab=20.10 E-value=7.2e+02 Score=23.20 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=40.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
.+.|..=--..++++.+...-|++...- |+ ..=++.|.+++++.+++.++|..+.-+.
T Consensus 81 R~~H~~gas~~f~~~ylHi~R~~~~gsy----~~---~~~W~~Gv~l~~l~m~~af~GYvLpw~q 138 (381)
T MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSY----TK---IIVWNVGVLIFLLMILTAFIGYVLPWGQ 138 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc----CC---chHHHhhHHHHHHHHHHHHHHhccchhh
Confidence 4678866666666677777767664221 11 1236799999999999999999887543
No 155
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=20.03 E-value=2e+02 Score=24.28 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=42.6
Q ss_pred cchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 83 EWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146 (229)
Q Consensus 83 ~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~ 146 (229)
.|++.-+++-..+.++.++-+++|+...+-.. ....=+++|.+++.+.++|...-++.|-+.
T Consensus 78 ~~~~aaAAmL~~g~~i~~I~filgl~~~cv~~--~~~fyRvi~~~l~laaV~qi~sLvIyPVk~ 139 (201)
T KOG4671|consen 78 DGGRAAAAMLFIGAAILVICFILGLFALCVPL--KLVFYRVIGGLLFLAAVLQIISLVIYPVKY 139 (201)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--eEEeeeHHHHHHHHHHHHHhheeEEeeeee
Confidence 35555566666666677777777877543221 134567888889999999998887787653
No 156
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=20.03 E-value=5.4e+02 Score=21.70 Aligned_cols=52 Identities=8% Similarity=0.078 Sum_probs=34.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHH
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANI 172 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni 172 (229)
...-...|...+.+.+++...+-++...+ ......+||.+|..++..+..=.
T Consensus 41 ~~~~~~tG~~Al~llll~l~l~pL~~l~~---~~~l~~~RR~LGl~af~~a~lH~ 92 (205)
T PRK05419 41 KDIEHFTGLWALVFLLATLAVTPLRRLTG---QPLLIRTRRLLGLWAFFYATLHL 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887777766542211 12356688888888888776655
Done!