Query 048292
Match_columns 229
No_of_seqs 141 out of 844
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:08:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kqf_C FDH-N gamma, formate de 86.3 2.4 8.3E-05 34.4 7.6 29 152-180 108-136 (217)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 85.0 4.5 0.00015 33.3 8.8 22 120-141 62-83 (235)
3 2jwa_A Receptor tyrosine-prote 59.5 25 0.00086 21.7 5.2 26 191-216 17-42 (44)
4 2l2t_A Receptor tyrosine-prote 59.1 23 0.00079 21.8 5.0 32 184-215 9-40 (44)
5 3ayf_A Nitric oxide reductase; 57.9 1.5E+02 0.005 29.2 13.2 60 47-107 350-412 (800)
6 1vf5_A Cytochrome B6; photosyn 54.7 88 0.003 25.7 10.4 58 118-180 83-140 (215)
7 2knc_A Integrin alpha-IIB; tra 54.0 37 0.0013 21.9 5.5 34 184-217 12-45 (54)
8 2l8s_A Integrin alpha-1; trans 47.7 42 0.0014 21.6 4.9 35 183-217 8-42 (54)
9 2ks1_B Epidermal growth factor 42.4 25 0.00084 21.7 3.1 21 195-215 21-41 (44)
10 1pp9_C Cytochrome B; cytochrom 32.6 2.3E+02 0.008 25.1 9.2 57 118-181 80-136 (379)
11 2qjy_A Cytochrome B; cytochrom 26.8 3.6E+02 0.012 24.5 11.2 59 118-181 94-152 (445)
12 4gd3_A NI/Fe-hydrogenase 1 B-t 25.6 2.6E+02 0.0088 22.4 11.8 58 48-107 18-82 (235)
13 3cx5_C Cytochrome B-C1 complex 23.6 3.9E+02 0.013 23.7 11.2 59 118-181 79-137 (385)
14 3qrx_B Melittin; calcium-bindi 22.7 65 0.0022 17.3 2.2 13 203-215 14-26 (26)
15 4ev6_A Magnesium transport pro 22.4 66 0.0023 27.6 3.6 36 167-202 292-328 (339)
16 3zux_A Transporter, ASBTNM; tr 20.9 3.9E+02 0.013 22.7 10.8 19 50-68 163-181 (332)
17 2k1a_A Integrin alpha-IIB; sin 20.7 91 0.0031 18.9 2.9 31 184-214 10-40 (42)
18 2nr1_A NR1 M2, M2; receptor, s 20.6 72 0.0025 17.5 2.2 16 53-68 10-25 (27)
19 3ixz_A Potassium-transporting 20.3 6.2E+02 0.021 25.2 10.7 20 196-215 1006-1025(1034)
No 1
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=86.30 E-value=2.4 Score=34.39 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=22.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 152 WWEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 152 ~~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
.+|...+..=.+++++..+.+.+|+.+..
T Consensus 108 ~~n~~~~~~~~~l~~l~~~~~~TG~~~~~ 136 (217)
T 1kqf_C 108 KYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777667778888888999987764
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=85.01 E-value=4.5 Score=33.32 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 048292 120 THRILGILVFAFATIQILTSFL 141 (229)
Q Consensus 120 ~H~~lG~~v~~l~~lQ~l~G~~ 141 (229)
.|..+|++++++.++-.+.++.
T Consensus 62 ~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 62 IHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887777777776665
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.53 E-value=25 Score=21.68 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 048292 191 AILALLAFLAAALEIFRWIVKSKLQL 216 (229)
Q Consensus 191 ~~~~~~~~v~i~lev~~w~~~~r~~~ 216 (229)
++++++.++.+.+-+.-|.|++|+++
T Consensus 17 ~vVGvll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHhheehhhhhc
Confidence 33444444445555566777776554
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=59.10 E-value=23 Score=21.83 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048292 184 KWKWLYVAILALLAFLAAALEIFRWIVKSKLQ 215 (229)
Q Consensus 184 ~~~~~~~~~~~~~~~v~i~lev~~w~~~~r~~ 215 (229)
...++-+++.++.+++.+.+-++-+.+++|++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444444433444444444444444444433
No 5
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=57.90 E-value=1.5e+02 Score=29.19 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=34.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHH---HHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHh
Q 048292 47 HARTAHGILNIIGWGILLPIGV---IIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGL 107 (229)
Q Consensus 47 ~~~~~Hg~lM~iAw~iL~P~gi---l~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~ 107 (229)
+++.+||.+|.. |....-.|. ++.|..++-|...+..-.+...+-.++.++.++++.+|.
T Consensus 350 ~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g~dp~~~~~L~~~~fwl~~~g~vl~~~s~~~G~ 412 (800)
T 3ayf_A 350 IAKGYHLQLAIF-WIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGV 412 (800)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 677899999998 877655553 333444310111111334455556666777777776654
No 6
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=54.72 E-value=88 Score=25.67 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=38.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS 180 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~ 180 (229)
.+.|..=.-..++++.+...-|++...-+.++... +..|.+++++.+++.++|..++-
T Consensus 83 R~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~-----W~~Gv~l~~l~m~~aF~GYvLPw 140 (215)
T 1vf5_A 83 RSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELT-----WISGVILAVITVSFGVTGYSLPW 140 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHH-----HHHHHHHHHHHHHHHHHHTTTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCce-----eHhHHHHHHHHHHHHHcccccCC
Confidence 35677777777777777777777653322222223 44888888888888888877764
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.00 E-value=37 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 048292 184 KWKWLYVAILALLAFLAAALEIFRWIVKSKLQLP 217 (229)
Q Consensus 184 ~~~~~~~~~~~~~~~v~i~lev~~w~~~~r~~~~ 217 (229)
-|.++..+..+++.+..++.-.+++-.++|+.+|
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~ 45 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCC
Confidence 3556666666666666666666776666666654
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=47.73 E-value=42 Score=21.61 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 048292 183 EKWKWLYVAILALLAFLAAALEIFRWIVKSKLQLP 217 (229)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~i~lev~~w~~~~r~~~~ 217 (229)
.-|.++..+..+++.+..++.-.+++-.++|+.++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcc
Confidence 34666666666666666666666776666666553
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.36 E-value=25 Score=21.67 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 048292 195 LLAFLAAALEIFRWIVKSKLQ 215 (229)
Q Consensus 195 ~~~~v~i~lev~~w~~~~r~~ 215 (229)
+.+++.+.+-++-+.+++|++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhhhhHhh
Confidence 333333444434444444433
No 10
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=32.56 E-value=2.3e+02 Score=25.12 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=35.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~ 181 (229)
.+.|..=.-..++++.+...-|++...-+ + ++ =+..|.+++++.+++.++|..+.-+
T Consensus 80 R~~H~~gAs~ffi~~ylHi~Rglyygsy~-~-~~-----~W~~Gv~l~ll~m~~aF~GYvLPwg 136 (379)
T 1pp9_C 80 RYMHANGASMFFICLYMHVGRGLYYGSYT-F-LE-----TWNIGVILLLTVMATAFMGYVLPWG 136 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGG-S-HH-----HHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheec-C-cc-----eehhhHHHHHHHHHHHheeeeccCc
Confidence 35666655555566666666666542211 1 11 3558888888888888888887743
No 11
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=26.76 E-value=3.6e+02 Score=24.46 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=42.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~ 181 (229)
.+.|..=.-..++++.+...-|++...=+.++.. =+..|.+++++.+++.++|..+.-.
T Consensus 94 R~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~-----~W~~Gv~l~ll~m~taF~GYvLPwg 152 (445)
T 2qjy_A 94 RYLHANGASLFFIAVYLHIFRGLYYGSYKAPREV-----TWIVGMLIYLAMMATAFMGYVLPWG 152 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHH-----HHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc-----eeeehHHHHHHHHHHHHHheeccCC
Confidence 4678877777777777777777775332222222 3569999999999999999988753
No 12
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=25.62 E-value=2.6e+02 Score=22.37 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=31.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc------c-hhhhHhHHHHHHHHHHHHHHhHh
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDE------W-HPLHMLCQISGYILGTVGWGIGL 107 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~------W-f~~H~~lq~~a~il~i~G~~lg~ 107 (229)
.+..| +++++++..++..|.......... .+.+. | ..+|..+..+-+++.+.=++.++
T Consensus 18 ~R~~H-W~~a~~ii~l~~tG~~~~~~~~~~-~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 18 VRIWH-WLTVLCMAVLMVTGYFIGKPLPSV-SGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHHHHSCCCCC-CSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCccccc-cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566 678888888888886653211100 01111 1 24798877665555554444443
No 13
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=23.61 E-value=3.9e+02 Score=23.74 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=38.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 048292 118 LKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~ 181 (229)
.+.|..=.-..++++.+...-|++...=+.++.. =+..|.+++++.+++.++|..+.-+
T Consensus 79 R~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~-----~W~~Gv~l~ll~m~~aF~GYvLPwg 137 (385)
T 3cx5_C 79 RYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVT-----LWNVGVIIFILTIATAFLGYCCVYG 137 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc-----eeeecHHHHHHHHHHHHHhhhccCC
Confidence 3567776666677777777777765332212222 2558888888888888888887743
No 14
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=22.72 E-value=65 Score=17.27 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhcc
Q 048292 203 LEIFRWIVKSKLQ 215 (229)
Q Consensus 203 lev~~w~~~~r~~ 215 (229)
=.+.+|.+++|||
T Consensus 14 P~liSWiK~kr~~ 26 (26)
T 3qrx_B 14 PALISWIKRKRQQ 26 (26)
T ss_pred hHHHHHHHHHhcC
Confidence 3567899999875
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.36 E-value=66 Score=27.63 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhcc-CCCchHHHHHHHHHHHHHHHHH
Q 048292 167 LSIANIFQGIIHQS-HAEKWKWLYVAILALLAFLAAA 202 (229)
Q Consensus 167 La~vni~~Gl~~~~-~~~~~~~~~~~~~~~~~~v~i~ 202 (229)
+.+++.+.|+.... +...|..+|.+++++++++.++
T Consensus 292 ~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~ 328 (339)
T 4ev6_A 292 PMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI 328 (339)
T ss_dssp HHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH
Confidence 44445566666543 3345666666665555554443
No 16
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=20.92 E-value=3.9e+02 Score=22.75 Aligned_cols=19 Identities=42% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 048292 50 TAHGILNIIGWGILLPIGV 68 (229)
Q Consensus 50 ~~Hg~lM~iAw~iL~P~gi 68 (229)
..-..+..+...++.|..+
T Consensus 163 ~~~~~~~~l~~~vllP~~l 181 (332)
T 3zux_A 163 QAAGMLMSIVKMVLLPIVL 181 (332)
T ss_dssp HHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3445677788888999654
No 17
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.75 E-value=91 Score=18.86 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048292 184 KWKWLYVAILALLAFLAAALEIFRWIVKSKL 214 (229)
Q Consensus 184 ~~~~~~~~~~~~~~~v~i~lev~~w~~~~r~ 214 (229)
-|.++..+..+++.+..++.-.++.-.++|+
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVGFFKRN 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 3555555555655555555555655445554
No 18
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=20.63 E-value=72 Score=17.49 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 048292 53 GILNIIGWGILLPIGV 68 (229)
Q Consensus 53 g~lM~iAw~iL~P~gi 68 (229)
..-|..+|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 4568889999998775
No 19
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=20.30 E-value=6.2e+02 Score=25.17 Aligned_cols=20 Identities=15% Similarity=-0.117 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 048292 196 LAFLAAALEIFRWIVKSKLQ 215 (229)
Q Consensus 196 ~~~v~i~lev~~w~~~~r~~ 215 (229)
-+++.++-|+++|.++++..
T Consensus 1006 ~~~~~~~~e~~K~~~r~~~~ 1025 (1034)
T 3ixz_A 1006 GLLIFVYDEIRKLGVRCCPG 1025 (1034)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33445678999988776643
Done!