Query 048292
Match_columns 229
No_of_seqs 141 out of 844
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 14:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048292.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048292hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 65.1 16 0.0012 28.7 8.8 79 96-181 28-122 (246)
2 d1kqfc_ f.21.1.1 (C:) Formate 61.3 28 0.002 25.8 13.9 31 151-181 106-136 (216)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 57.8 40 0.0029 26.5 10.6 81 97-182 42-138 (261)
4 d1q90b_ f.21.1.2 (B:) Cytochro 46.4 56 0.0041 24.8 10.7 99 78-182 24-139 (212)
5 d1q90b_ f.21.1.2 (B:) Cytochro 33.7 90 0.0066 23.5 10.0 95 48-146 29-139 (212)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 16.9 2.9E+02 0.021 23.4 13.5 26 44-69 51-76 (549)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 13.8 2.6E+02 0.019 21.4 10.0 94 49-146 29-138 (261)
8 d2iuba2 f.17.3.1 (A:286-349) M 11.5 20 0.0015 21.7 -0.4 18 162-179 14-31 (64)
9 d2bs2c1 f.21.2.1 (C:1-254) Fum 10.8 1.7E+02 0.013 22.2 5.2 27 144-170 17-43 (254)
10 d1kqfc_ f.21.1.1 (C:) Formate 8.9 3.2E+02 0.023 19.3 12.7 60 118-177 109-174 (216)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=65.13 E-value=16 Score=28.67 Aligned_cols=79 Identities=9% Similarity=0.031 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHhhhcCCCC----------------CCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292 96 YILGTVGWGIGLWLGNSSK----------------HYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS 159 (229)
Q Consensus 96 ~il~i~G~~lg~~~~~~~~----------------~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~ 159 (229)
.+..+.|+.++.....+.. ......|.+---+.++++.+...-+++...-+ +.| . +.
T Consensus 28 ~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~-~~~-~-----w~ 100 (246)
T d1ppjc2 28 ILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYT-FLE-T-----WN 100 (246)
T ss_dssp HHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-SHH-H-----HH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcCcc-chH-H-----HH
Confidence 3445677777766433211 12245677766666666666666666542211 112 1 45
Q ss_pred HHHHHHHHHHHHHHHHhhhccC
Q 048292 160 MGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 160 ~G~~~~~La~vni~~Gl~~~~~ 181 (229)
.|..++++.+...++|-.+.-+
T Consensus 101 ~G~~l~~l~m~~af~GY~Lpw~ 122 (246)
T d1ppjc2 101 IGVILLLTVMATAFMGYVLPWG 122 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHeeccCCCc
Confidence 7889999999999999888753
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=61.33 E-value=28 Score=25.76 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=26.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 048292 151 KWWEIFHQSMGYTVVALSIANIFQGIIHQSH 181 (229)
Q Consensus 151 ~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~ 181 (229)
..+|...+....++++++.+.+.+|+.+..+
T Consensus 106 ~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~~ 136 (216)
T d1kqfc_ 106 GKYNAGQKMMFWSIMSMIFVLLVTGVIIWRP 136 (216)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3568899999999999999999999988753
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.79 E-value=40 Score=26.47 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=50.9
Q ss_pred HHHHHHHHhHhhhcCCCC----------------CCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHH
Q 048292 97 ILGTVGWGIGLWLGNSSK----------------HYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSM 160 (229)
Q Consensus 97 il~i~G~~lg~~~~~~~~----------------~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~ 160 (229)
+..+.|+.++.....+.. ....+.|.+-.-..++++.++..-+++...-+.+ +..-++.
T Consensus 42 iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~p-----re~~W~~ 116 (261)
T d3cx5c2 42 IQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSP-----RVTLWNV 116 (261)
T ss_dssp HHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTT-----CHHHHHH
T ss_pred HHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccCc-----cchhHHh
Confidence 445677777766433211 1124567777777777777777777764322211 2245668
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 048292 161 GYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 161 G~~~~~La~vni~~Gl~~~~~~ 182 (229)
|..++++.+...++|..+.-+.
T Consensus 117 Gv~l~~l~~~~af~GY~Lpw~q 138 (261)
T d3cx5c2 117 GVIIFILTIATAFLGYCCVYGQ 138 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBH
T ss_pred hHHHHHHHHHHHHhhhhcCCCc
Confidence 8888888888888888887543
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=46.36 E-value=56 Score=24.76 Aligned_cols=99 Identities=7% Similarity=0.059 Sum_probs=62.2
Q ss_pred CCCCCcchhhhHhHHH-HHHHHHHHHHHhHhhhcCCCC----------------CCCcchhhHHHHHHHHHHHHHHHHhh
Q 048292 78 PIEYDEWHPLHMLCQI-SGYILGTVGWGIGLWLGNSSK----------------HYTLKTHRILGILVFAFATIQILTSF 140 (229)
Q Consensus 78 ~~~~~~Wf~~H~~lq~-~a~il~i~G~~lg~~~~~~~~----------------~~~~~~H~~lG~~v~~l~~lQ~l~G~ 140 (229)
|..-..|. .--.+-. +=.+..+.|+.+++....+.. ....+.|.+-.-..++++.++..-++
T Consensus 24 P~~~~~~~-~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~ 102 (212)
T d1q90b_ 24 PPHVNIFY-CIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVY 102 (212)
T ss_dssp CTTCCSGG-GHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHH
Confidence 43334443 3333333 334455688888766432211 12246788888888888888888777
Q ss_pred hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048292 141 LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA 182 (229)
Q Consensus 141 ~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~ 182 (229)
+...-+ + .+..-++.|..++++.+...++|..+.-+.
T Consensus 103 ~~gsyk----~-pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q 139 (212)
T d1q90b_ 103 LTGGFK----R-PRELTWVTGVIMAVCTVSFGVTGYSLPWDQ 139 (212)
T ss_dssp TTTTTS----S-SCHHHHHHHHHHHHHHHHHHHHHHHTTCBH
T ss_pred HcCccc----C-cccceehHhHHHHHHHHHHHHhhhhcchhh
Confidence 653222 1 123567799999999999999999888654
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=33.74 E-value=90 Score=23.49 Aligned_cols=95 Identities=8% Similarity=0.037 Sum_probs=56.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhh------------hHhHHHHHHHHHHHHHHh----HhhhcC
Q 048292 48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPL------------HMLCQISGYILGTVGWGI----GLWLGN 111 (229)
Q Consensus 48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~------------H~~lq~~a~il~i~G~~l----g~~~~~ 111 (229)
....-|.+..+++.+..-.|++.+-|+.+- .+..|--+ =+.++.-+.-+.++-..+ ++..+.
T Consensus 29 ~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~--~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gs 106 (212)
T d1q90b_ 29 IFYCIGGITFTCFLVQVATGFAMTFYYRPT--VAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGG 106 (212)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHTTTCCCS--TTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCc
Confidence 456679999999999999999999777652 11111111 122222222222222222 222222
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 112 SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146 (229)
Q Consensus 112 ~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~ 146 (229)
. ..+...-=+.|++++.+.......|+.-|...
T Consensus 107 y--k~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q 139 (212)
T d1q90b_ 107 F--KRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQ 139 (212)
T ss_dssp T--SSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBH
T ss_pred c--cCcccceehHhHHHHHHHHHHHHhhhhcchhh
Confidence 1 12234567799999999999999999987654
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=16.90 E-value=2.9e+02 Score=23.39 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=19.5
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHH
Q 048292 44 GRHHARTAHGILNIIGWGILLPIGVI 69 (229)
Q Consensus 44 ~~~~~~~~Hg~lM~iAw~iL~P~gil 69 (229)
.-.+.+..||..|...|...+-.|..
T Consensus 51 ~Y~~~~T~Hg~~mif~f~~~~~~g~~ 76 (549)
T d1xmea1 51 SYYQGLTLHGVLNAIVFTQLFAQAIM 76 (549)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999888766655543
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.83 E-value=2.6e+02 Score=21.35 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=55.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchh------------hhHhHHHHHHHHHHHHHHh----HhhhcCC
Q 048292 49 RTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHP------------LHMLCQISGYILGTVGWGI----GLWLGNS 112 (229)
Q Consensus 49 ~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~------------~H~~lq~~a~il~i~G~~l----g~~~~~~ 112 (229)
..-=|.+..+++.+.+-.|++.+-|+.+- .+..+-. +=|.++.-|.-+.++-..+ ++..+..
T Consensus 29 ~w~~G~ll~~~~~iqiiTGi~L~~~Y~p~--~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy 106 (261)
T d3cx5c2 29 WWNMGSLLGLCLVIQIVTGIFMAMHYSSN--IELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSY 106 (261)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTTCCCS--TTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecCC--hHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccc
Confidence 34459999999999999999999888652 1111111 1122233232222222222 2222322
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 048292 113 SKHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146 (229)
Q Consensus 113 ~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~ 146 (229)
. .+...-=+.|++++.+...-.+.|+.-|...
T Consensus 107 ~--~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q 138 (261)
T d3cx5c2 107 R--SPRVTLWNVGVIIFILTIATAFLGYCCVYGQ 138 (261)
T ss_dssp S--TTCHHHHHHHHHHHHHHHHHHHHHHHHHCBH
T ss_pred c--CccchhHHhhHHHHHHHHHHHHhhhhcCCCc
Confidence 1 1123345789999999999999999987654
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.46 E-value=20 Score=21.74 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 048292 162 YTVVALSIANIFQGIIHQ 179 (229)
Q Consensus 162 ~~~~~La~vni~~Gl~~~ 179 (229)
.+.+.+..++...|+...
T Consensus 14 ~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 14 TIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHhhhccCCC
Confidence 333444445555566544
No 9
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=10.77 E-value=1.7e+02 Score=22.20 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=18.4
Q ss_pred CCCCCCcchhHhHHHHHHHHHHHHHHH
Q 048292 144 RRENECSKWWEIFHQSMGYTVVALSIA 170 (229)
Q Consensus 144 ~~~~~~R~~~~~~H~~~G~~~~~La~v 170 (229)
+|++|....++++|...|.++.+.-+.
T Consensus 17 ~~~s~~~~~l~~l~slTGlvL~lFl~~ 43 (254)
T d2bs2c1 17 RKKSRMPAKLDWWQSATGLFLGLFMIG 43 (254)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 445555667899999999985544433
No 10
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=8.90 E-value=3.2e+02 Score=19.27 Aligned_cols=60 Identities=7% Similarity=0.246 Sum_probs=43.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhh--ccCCCC----CCcchhHhHHHHHHHHHHHHHHHHHHHHhh
Q 048292 118 LKTHRILGILVFAFATIQILTSFL--QPRREN----ECSKWWEIFHQSMGYTVVALSIANIFQGII 177 (229)
Q Consensus 118 ~~~H~~lG~~v~~l~~lQ~l~G~~--rp~~~~----~~R~~~~~~H~~~G~~~~~La~vni~~Gl~ 177 (229)
+...+...++++++..++.+.|+. .|.... ........+|.+.+.+++.+-++=++.++.
T Consensus 109 n~~qkl~~~~~~~~~~~~~~TGl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~ 174 (216)
T d1kqfc_ 109 NAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777888888888999999875 333221 123345679999999888888888887753
Done!