BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048294
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 28/177 (15%)
Query: 41 DSMFIREHLKNEENTRLVV-----FYSIVDETDPFDYPLDLFHL-YLDETLEDLSSLILD 94
D+ + H EN +L+V FY +D + P+D DLF + Y+ +
Sbjct: 58 DTNKVDHHTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYI 117
Query: 95 PLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFG 154
P+ V G + G ++ D + L + PKC + R T +G
Sbjct: 118 PVPIVSELQSGKW-GAKIVMREDRSVRL------SIQSSPKCIVGKFRMYVAVWTPYGVL 170
Query: 155 RDPKNNKYKLVLIFTLW---------DEKNSDLYDFSQTAVY------NLSTNSWRY 196
R +N + ++F W +EK + Y + V ++ T SW Y
Sbjct: 171 RTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSY 227
>pdb|1FIE|A Chain A, Recombinant Human Coagulation Factor Xiii
pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xiii
Length = 731
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 28/177 (15%)
Query: 41 DSMFIREHLKNEENTRLVV-----FYSIVDETDPFDYPLDLFHL-YLDETLEDLSSLILD 94
D+ + H EN +L+V FY +D + P+D DLF + Y+ +
Sbjct: 58 DTNKVDHHTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYI 117
Query: 95 PLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFG 154
P+ V G + G ++ D + L + PKC + R T +G
Sbjct: 118 PVPIVSELQSGKW-GAKIVMREDRSVRL------SIQSSPKCIVGKFRMYVAVWTPYGVL 170
Query: 155 RDPKNNKYKLVLIFTLW---------DEKNSDLYDFSQTAVY------NLSTNSWRY 196
R +N + ++F W +EK + Y + V ++ T SW Y
Sbjct: 171 RTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSY 227
>pdb|1GGT|A Chain A, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1GGT|B Chain B, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 28/177 (15%)
Query: 41 DSMFIREHLKNEENTRLVV-----FYSIVDETDPFDYPLDLFHL-YLDETLEDLSSLILD 94
D+ + H EN +L+V FY +D + P+D DLF + Y+ +
Sbjct: 58 DTNKVDHHTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYI 117
Query: 95 PLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFG 154
P+ V G + G ++ D + L + PKC + R T +G
Sbjct: 118 PVPIVSELQSGKW-GAKIVMREDRSVRL------SIQSSPKCIVGKFRMYVAVWTPYGVL 170
Query: 155 RDPKNNKYKLVLIFTLW---------DEKNSDLYDFSQTAVY------NLSTNSWRY 196
R +N + ++F W +EK + Y + V ++ T SW Y
Sbjct: 171 RTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSY 227
>pdb|1EX0|A Chain A, Human Factor Xiii, Mutant W279f Zymogen
pdb|1EX0|B Chain B, Human Factor Xiii, Mutant W279f Zymogen
Length = 731
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 28/177 (15%)
Query: 41 DSMFIREHLKNEENTRLVV-----FYSIVDETDPFDYPLDLFHL-YLDETLEDLSSLILD 94
D+ + H EN +L+V FY +D + P+D DLF + Y+ +
Sbjct: 58 DTNKVDHHTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYI 117
Query: 95 PLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFG 154
P+ V G + G ++ D + L + PKC + R T +G
Sbjct: 118 PVPIVSELQSGKW-GAKIVMREDRSVRL------SIQSSPKCIVGKFRMYVAVWTPYGVL 170
Query: 155 RDPKNNKYKLVLIFTLW---------DEKNSDLYDFSQTAVY------NLSTNSWRY 196
R +N + ++F W +EK + Y + V ++ T SW Y
Sbjct: 171 RTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSY 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,687,100
Number of Sequences: 62578
Number of extensions: 569591
Number of successful extensions: 1116
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 6
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)