Query 048294
Match_columns 375
No_of_seqs 166 out of 1525
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 3.3E-35 7.2E-40 260.9 25.5 215 104-330 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.9E-15 4.1E-20 126.6 16.4 137 213-350 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 2.8E-15 6E-20 120.5 13.7 104 213-316 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.3 2.6E-10 5.6E-15 105.6 21.4 319 2-352 1-373 (373)
5 PF12937 F-box-like: F-box-lik 98.9 5E-10 1.1E-14 72.7 0.6 43 5-47 1-43 (47)
6 PHA02713 hypothetical protein; 98.7 1.1E-06 2.3E-11 88.0 20.0 210 103-337 298-542 (557)
7 PF00646 F-box: F-box domain; 98.7 4.5E-09 9.7E-14 68.6 1.0 45 5-49 3-47 (48)
8 smart00256 FBOX A Receptor for 98.7 2.7E-09 5.9E-14 67.1 -0.5 39 8-46 1-39 (41)
9 PHA03098 kelch-like protein; P 98.6 5.4E-06 1.2E-10 82.9 21.7 193 119-336 312-519 (534)
10 PLN02153 epithiospecifier prot 98.5 7.6E-05 1.6E-09 70.2 24.6 203 119-336 51-292 (341)
11 PLN02193 nitrile-specifier pro 98.5 2.6E-05 5.6E-10 76.6 21.4 202 119-337 194-419 (470)
12 KOG4441 Proteins containing BT 98.5 1.7E-05 3.7E-10 79.3 19.9 209 102-336 326-554 (571)
13 PHA02713 hypothetical protein; 98.5 2.1E-05 4.6E-10 78.7 20.1 194 119-336 273-497 (557)
14 PHA02790 Kelch-like protein; P 98.4 7.2E-05 1.6E-09 73.7 21.2 184 119-335 288-477 (480)
15 TIGR03548 mutarot_permut cycli 98.3 0.0003 6.5E-09 65.7 22.4 110 181-295 87-204 (323)
16 KOG4441 Proteins containing BT 98.2 6.9E-05 1.5E-09 75.0 16.8 194 119-336 302-507 (571)
17 TIGR03547 muta_rot_YjhT mutatr 98.0 0.0022 4.7E-08 60.5 22.2 237 106-357 15-330 (346)
18 PHA03098 kelch-like protein; P 97.9 0.0009 1.9E-08 67.0 18.9 172 103-296 337-522 (534)
19 PRK14131 N-acetylneuraminic ac 97.9 0.0025 5.4E-08 60.8 20.4 239 104-357 34-352 (376)
20 PLN02153 epithiospecifier prot 97.9 0.0021 4.6E-08 60.4 19.6 152 182-337 50-234 (341)
21 PHA02790 Kelch-like protein; P 97.9 0.0011 2.4E-08 65.3 18.1 166 181-358 286-456 (480)
22 PLN02193 nitrile-specifier pro 97.7 0.0049 1.1E-07 60.6 19.3 177 103-296 223-421 (470)
23 PRK14131 N-acetylneuraminic ac 97.7 0.0093 2E-07 56.9 20.6 147 182-333 189-373 (376)
24 TIGR03548 mutarot_permut cycli 97.6 0.0053 1.1E-07 57.3 17.0 152 103-273 118-312 (323)
25 KOG2120 SCF ubiquitin ligase, 97.4 3.6E-05 7.9E-10 68.4 -0.4 41 4-44 97-137 (419)
26 KOG4693 Uncharacterized conser 96.9 0.046 1E-06 48.1 14.4 113 181-296 156-287 (392)
27 TIGR03547 muta_rot_YjhT mutatr 96.8 0.068 1.5E-06 50.3 15.9 149 183-336 30-235 (346)
28 KOG4693 Uncharacterized conser 96.6 0.098 2.1E-06 46.1 13.7 212 119-340 45-288 (392)
29 KOG1230 Protein containing rep 96.6 0.09 2E-06 49.1 14.0 209 119-339 99-351 (521)
30 KOG2997 F-box protein FBX9 [Ge 96.1 0.0015 3.2E-08 58.6 -0.2 45 5-49 107-156 (366)
31 KOG0281 Beta-TrCP (transducin 95.5 0.0038 8.2E-08 56.5 0.1 43 6-48 76-122 (499)
32 KOG0379 Kelch repeat-containin 95.2 1.3 2.9E-05 43.7 16.9 154 183-339 89-260 (482)
33 KOG0379 Kelch repeat-containin 94.6 1.2 2.5E-05 44.1 14.6 204 120-339 90-312 (482)
34 KOG1230 Protein containing rep 94.6 0.65 1.4E-05 43.7 11.6 111 183-294 99-224 (521)
35 PF02897 Peptidase_S9_N: Proly 91.6 12 0.00025 36.1 16.3 119 214-336 284-412 (414)
36 PF13360 PQQ_2: PQQ-like domai 91.6 8.6 0.00019 33.4 16.6 189 107-335 35-237 (238)
37 PF13964 Kelch_6: Kelch motif 91.5 0.47 1E-05 30.5 4.5 36 213-248 7-44 (50)
38 COG4257 Vgb Streptogramin lyas 91.1 11 0.00024 33.9 15.7 221 103-338 67-315 (353)
39 PF02191 OLF: Olfactomedin-lik 90.5 9.2 0.0002 34.2 13.2 116 213-337 74-212 (250)
40 PF07250 Glyoxal_oxid_N: Glyox 90.2 12 0.00026 33.3 13.4 168 181-356 45-226 (243)
41 TIGR01640 F_box_assoc_1 F-box 89.7 7 0.00015 34.2 11.9 117 215-338 3-137 (230)
42 PF08450 SGL: SMP-30/Gluconola 89.4 15 0.00032 32.5 20.1 199 105-340 8-225 (246)
43 KOG4341 F-box protein containi 87.2 0.15 3.2E-06 48.1 -0.6 37 6-42 73-109 (483)
44 PF01344 Kelch_1: Kelch motif; 87.0 2 4.3E-05 26.9 4.9 35 213-247 7-43 (47)
45 smart00284 OLF Olfactomedin-li 85.4 24 0.00051 31.6 12.3 116 213-337 79-217 (255)
46 PF13964 Kelch_6: Kelch motif 84.9 2.4 5.3E-05 27.1 4.5 21 118-138 28-48 (50)
47 PF07893 DUF1668: Protein of u 84.7 21 0.00046 33.5 12.5 134 103-253 71-223 (342)
48 COG4257 Vgb Streptogramin lyas 82.8 15 0.00033 33.0 9.8 123 103-254 194-319 (353)
49 PF07762 DUF1618: Protein of u 81.9 12 0.00026 29.6 8.3 66 232-297 6-98 (131)
50 PF07646 Kelch_2: Kelch motif; 81.6 4.1 8.9E-05 25.9 4.6 37 213-249 7-47 (49)
51 smart00612 Kelch Kelch domain. 81.2 2.6 5.6E-05 26.0 3.5 21 181-201 14-34 (47)
52 KOG0274 Cdc4 and related F-box 79.2 0.48 1E-05 47.3 -0.7 43 5-47 108-150 (537)
53 PF10282 Lactonase: Lactonase, 78.5 59 0.0013 30.4 13.2 114 217-336 154-285 (345)
54 PF10282 Lactonase: Lactonase, 76.5 67 0.0015 30.0 16.2 150 181-336 165-332 (345)
55 PF01344 Kelch_1: Kelch motif; 76.2 5.3 0.00011 24.9 3.8 34 163-200 13-46 (47)
56 smart00564 PQQ beta-propeller 72.5 11 0.00024 21.2 4.3 26 309-334 5-30 (33)
57 KOG4152 Host cell transcriptio 70.8 39 0.00084 33.2 9.5 160 119-293 58-246 (830)
58 cd01207 Ena-Vasp Enabled-VASP- 67.5 17 0.00036 28.0 5.3 43 119-169 10-52 (111)
59 KOG2055 WD40 repeat protein [G 65.6 1.4E+02 0.003 29.1 12.5 103 229-336 277-382 (514)
60 PF01011 PQQ: PQQ enzyme repea 63.9 15 0.00031 21.9 3.6 24 312-335 2-25 (38)
61 PF08450 SGL: SMP-30/Gluconola 62.4 1.1E+02 0.0023 26.8 14.2 110 213-335 5-129 (246)
62 KOG1963 WD40 repeat protein [G 61.4 74 0.0016 33.1 10.0 101 232-334 432-545 (792)
63 PF13360 PQQ_2: PQQ-like domai 61.0 1.1E+02 0.0023 26.3 17.6 135 183-334 4-146 (238)
64 PF13418 Kelch_4: Galactose ox 60.7 7 0.00015 24.7 1.9 19 119-137 30-48 (49)
65 KOG0310 Conserved WD40 repeat- 58.4 1.9E+02 0.004 28.2 14.3 154 181-350 47-207 (487)
66 PF08268 FBA_3: F-box associat 57.7 38 0.00082 26.5 6.1 42 319-360 19-66 (129)
67 TIGR03074 PQQ_membr_DH membran 56.9 2E+02 0.0043 30.4 12.6 29 213-246 190-220 (764)
68 PLN02772 guanylate kinase 51.7 83 0.0018 30.2 8.1 73 213-286 30-107 (398)
69 KOG2106 Uncharacterized conser 51.1 2.6E+02 0.0056 27.7 15.6 67 275-347 388-455 (626)
70 COG1520 FOG: WD40-like repeat 50.9 2.2E+02 0.0047 26.8 13.2 138 182-335 35-178 (370)
71 cd01206 Homer Homer type EVH1 50.4 40 0.00086 25.7 4.6 39 119-168 12-51 (111)
72 PF13570 PQQ_3: PQQ-like domai 50.3 29 0.00062 20.8 3.4 24 213-241 17-40 (40)
73 PF07893 DUF1668: Protein of u 49.5 2.3E+02 0.0049 26.6 12.3 55 183-242 200-254 (342)
74 PF03088 Str_synth: Strictosid 49.5 35 0.00076 25.1 4.2 18 319-336 36-53 (89)
75 KOG3545 Olfactomedin and relat 49.3 1.9E+02 0.0042 25.7 10.1 116 213-337 73-211 (249)
76 TIGR03300 assembly_YfgL outer 48.0 2.4E+02 0.0052 26.5 14.7 108 213-334 101-214 (377)
77 TIGR03075 PQQ_enz_alc_DH PQQ-d 47.2 3.1E+02 0.0067 27.5 12.7 110 213-335 65-196 (527)
78 PF13415 Kelch_3: Galactose ox 44.5 26 0.00056 22.1 2.6 22 181-202 18-39 (49)
79 KOG2502 Tub family proteins [G 44.3 13 0.00028 34.4 1.5 38 4-41 44-89 (355)
80 KOG0316 Conserved WD40 repeat- 43.3 2.4E+02 0.0052 25.1 13.6 183 108-334 28-219 (307)
81 PRK11138 outer membrane biogen 42.8 3E+02 0.0065 26.1 20.3 104 213-334 252-359 (394)
82 COG3055 Uncharacterized protei 42.4 1.9E+02 0.0041 27.2 8.6 113 182-298 113-268 (381)
83 PF15525 DUF4652: Domain of un 41.7 1.9E+02 0.0041 24.6 7.8 59 278-337 87-157 (200)
84 KOG0296 Angio-associated migra 41.2 2.6E+02 0.0056 26.4 9.2 88 276-367 307-398 (399)
85 TIGR03300 assembly_YfgL outer 38.9 3.3E+02 0.0072 25.5 21.8 134 183-333 156-302 (377)
86 PRK11028 6-phosphogluconolacto 37.9 3.2E+02 0.007 25.0 14.2 134 183-329 13-157 (330)
87 COG4946 Uncharacterized protei 36.0 41 0.00089 32.7 3.5 30 309-338 276-305 (668)
88 PF07370 DUF1489: Protein of u 35.9 25 0.00054 28.0 1.7 30 213-242 43-72 (137)
89 KOG0647 mRNA export protein (c 35.3 3.4E+02 0.0074 25.0 8.8 61 276-340 49-114 (347)
90 COG2706 3-carboxymuconate cycl 34.8 3.9E+02 0.0084 25.1 18.7 153 181-336 166-331 (346)
91 KOG0301 Phospholipase A2-activ 34.8 5.1E+02 0.011 26.8 10.7 89 230-328 198-288 (745)
92 KOG1920 IkappaB kinase complex 33.7 7E+02 0.015 27.7 15.5 124 231-357 265-401 (1265)
93 PRK11138 outer membrane biogen 33.1 4.3E+02 0.0093 25.0 21.6 187 107-334 119-318 (394)
94 KOG0315 G-protein beta subunit 32.7 3.6E+02 0.0078 24.2 8.4 69 262-335 92-161 (311)
95 KOG0279 G protein beta subunit 32.3 1.7E+02 0.0037 26.5 6.5 69 262-336 201-271 (315)
96 KOG0292 Vesicle coat complex C 31.7 1.2E+02 0.0027 32.1 6.1 69 262-331 213-283 (1202)
97 PF00930 DPPIV_N: Dipeptidyl p 31.5 4.4E+02 0.0095 24.6 11.0 106 231-336 157-276 (353)
98 cd00837 EVH1 EVH1 (Enabled, Va 31.4 1.1E+02 0.0024 23.1 4.6 40 119-169 10-49 (104)
99 PRK11028 6-phosphogluconolacto 31.2 4.1E+02 0.0089 24.3 12.5 96 230-329 10-111 (330)
100 PF13013 F-box-like_2: F-box-l 31.0 14 0.0003 28.4 -0.4 29 5-33 22-50 (109)
101 KOG0291 WD40-repeat-containing 31.0 4.9E+02 0.011 27.2 10.1 113 213-329 251-381 (893)
102 KOG2055 WD40 repeat protein [G 30.8 2E+02 0.0044 27.9 7.1 82 276-357 234-323 (514)
103 PF14339 DUF4394: Domain of un 30.8 1.5E+02 0.0032 26.3 5.8 53 108-166 38-92 (236)
104 COG2706 3-carboxymuconate cycl 29.5 4.8E+02 0.01 24.5 14.6 106 229-337 164-285 (346)
105 KOG0649 WD40 repeat protein [G 29.2 2.3E+02 0.005 25.3 6.6 84 249-335 56-151 (325)
106 PF15408 PH_7: Pleckstrin homo 29.2 11 0.00024 27.1 -1.0 24 22-45 76-99 (104)
107 COG3386 Gluconolactonase [Carb 27.0 5E+02 0.011 23.9 12.2 105 218-333 37-156 (307)
108 KOG2321 WD40 repeat protein [G 26.6 2.5E+02 0.0054 28.3 7.0 99 81-193 160-261 (703)
109 cd00216 PQQ_DH Dehydrogenases 26.0 2.8E+02 0.006 27.4 7.7 26 213-243 57-82 (488)
110 COG3055 Uncharacterized protei 25.8 5.8E+02 0.013 24.2 12.6 133 179-317 193-356 (381)
111 KOG4378 Nuclear protein COP1 [ 24.7 2.5E+02 0.0053 27.8 6.5 55 275-334 185-245 (673)
112 KOG0639 Transducin-like enhanc 24.0 4.3E+02 0.0093 26.2 8.0 104 229-334 437-545 (705)
113 KOG3926 F-box proteins [Amino 23.0 33 0.00072 30.7 0.5 41 6-46 203-244 (332)
114 KOG4152 Host cell transcriptio 22.8 7.8E+02 0.017 24.6 9.9 123 156-286 210-362 (830)
115 KOG0315 G-protein beta subunit 22.3 5.8E+02 0.013 23.0 11.1 108 229-339 143-256 (311)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=3.3e-35 Score=260.89 Aligned_cols=215 Identities=26% Similarity=0.414 Sum_probs=162.4
Q ss_pred eeeecceEEEeeCCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCce
Q 048294 104 GGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQ 183 (375)
Q Consensus 104 ~~s~nGLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 183 (375)
++|||||||+... ..++||||+||+++.||+++.... ...... ++||||+.+++||||++...... .....
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~--~~~~~~-~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRS--NKESDT-YFLGYDPIEKQYKVLCFSDRSGN-----RNQSE 71 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccc--ccccce-EEEeecccCCcEEEEEEEeecCC-----CCCcc
Confidence 4799999999876 459999999999999997754211 011123 89999999999999999764321 13568
Q ss_pred EEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCc-eEEEEEECCCceee-eecCCCCCCCc--cce
Q 048294 184 TAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGH-KVVLSFDLGDEVYE-EIQGPCLPQSV--YVV 259 (375)
Q Consensus 184 ~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fDl~~e~~~-~i~lP~~~~~~--~~~ 259 (375)
++|||+++++||.++..++.. ..... +|++||++||++....... ..|++||+++|+|+ .+++|...... ...
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~--~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHH--PLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred EEEEEeCCCCccccccCCCCc--cccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 999999999999998543221 12334 8999999999995433222 38999999999999 59999765422 245
Q ss_pred eEEecCeEEEEEecCCCcEEEEEEEcC---ceeeEEEEECCC--CCc---cccEEEeecCcEEEEecC--Ce-EEEEeCC
Q 048294 260 MGLYKECISLLVLKTIEFCFEIWTMKD---KEWTKKLTVGPF--EGM---FHPLGFWKTGGFFAENQS--NQ-MILYDPR 328 (375)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~--~~~---~~~~~~~~~~~ll~~~~~--~~-~~~yd~~ 328 (375)
+++++|+||++........++||+|++ +.|+|+++|+.. ..+ ..++++.++|+|++...+ +. +++||++
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 778999999998854345699999997 679999999842 122 347888899999887764 44 9999998
Q ss_pred CC
Q 048294 329 TE 330 (375)
Q Consensus 329 ~~ 330 (375)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=1.9e-15 Score=126.63 Aligned_cols=137 Identities=20% Similarity=0.307 Sum_probs=96.5
Q ss_pred ceEeCccEEEeeeeccCCc-eEEEEEECCCcee-eeecCCCCCCCcc--ceeE-EecCeEEEEEecCCCcEEEEEEEcC-
Q 048294 213 CVNLDGGCYWLLELRSNGH-KVVLSFDLGDEVY-EEIQGPCLPQSVY--VVMG-LYKECISLLVLKTIEFCFEIWTMKD- 286 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~-~~il~fDl~~e~~-~~i~lP~~~~~~~--~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~- 286 (375)
+|++||++||++....... ..|++||+++|+| +.+++|....... ..|+ ..+|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 6999999999996533322 3899999999999 8899998876222 2343 4578999997654566799999994
Q ss_pred ----ceeeEEEEECCCCC--c-----cccEEEeecCcEEEEec-C------CeEEEEeCCCCcEEEEEEecc---ceEEE
Q 048294 287 ----KEWTKKLTVGPFEG--M-----FHPLGFWKTGGFFAENQ-S------NQMILYDPRTEEMKNFGLNSL---HFQVF 345 (375)
Q Consensus 287 ----~~W~~~~~i~~~~~--~-----~~~~~~~~~~~ll~~~~-~------~~~~~yd~~~~~~~~v~~~~~---~~~~~ 345 (375)
.+|+|.++|+.... . ...+.+.+++++++... . ..++.|+ +++.++++.+... +..++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 69999999985321 1 12233344556666543 1 4577777 7778888876332 45677
Q ss_pred EeecC
Q 048294 346 NYTET 350 (375)
Q Consensus 346 ~y~~S 350 (375)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 89887
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=2.8e-15 Score=120.48 Aligned_cols=104 Identities=26% Similarity=0.429 Sum_probs=81.4
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCceeeeecCCC--CCCCccceeEEecCeEEEEEecCCC--cEEEEEEEcC--
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPC--LPQSVYVVMGLYKECISLLVLKTIE--FCFEIWTMKD-- 286 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~--~~~~~~~~l~~~~g~L~l~~~~~~~--~~~~iW~l~~-- 286 (375)
|+++||++||++.........|++||+++|+|+.|++|. ........|.+++|+|+++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 689999999999764456789999999999999999992 2222235577999999999886432 4799999999
Q ss_pred -ceeeEEEEECCCC-------CccccEEEeecCcEEEE
Q 048294 287 -KEWTKKLTVGPFE-------GMFHPLGFWKTGGFFAE 316 (375)
Q Consensus 287 -~~W~~~~~i~~~~-------~~~~~~~~~~~~~ll~~ 316 (375)
++|++++.+-+.. ....++++.++|++++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7999987755431 23567788888998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.34 E-value=2.6e-10 Score=105.58 Aligned_cols=319 Identities=10% Similarity=0.073 Sum_probs=156.4
Q ss_pred CccCCCchHHHHHHHHccCC-ccccceeeeccccchhhcCChHHHHHHhhccccCCccceEEEEeccCCCCCCCcccccc
Q 048294 2 VISTGDFYEDAVRAILLKQP-VKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLY 80 (375)
Q Consensus 2 ~~~~~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (375)
++.+++||+|||..|..||| .-+++|||+|||+||+.+....= +.++.. .+.++...... ..| +..+
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~~~~-------~~~~~~~~~~~-~~~--~~~~- 68 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNPFRT-------RPLILFNPINP-SET--LTDD- 68 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCCccc-------ccccccCcccC-CCC--cccc-
Confidence 35688999999999999998 56899999999999998764210 000000 11112111000 001 0000
Q ss_pred CCCCcccCCCCccCCCCCCCC-eEeeeecceEEEeeCC---CeEEEEcccccceeccCCCCccCCCcc--cccceeeeE-
Q 048294 81 LDETLEDLSSLILDPLQPVCG-TAGGPYDGIFCILGND---NRLTLWNPANKEYRHVPKCRIIFPRYT--TIFRTNFGF- 153 (375)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~~~~-~~~~s~nGLl~~~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~~~- 153 (375)
+........ +......+.. ...++..|.|.-...+ +.+.+.||.++....+|+.....-+.. ....+ +.+
T Consensus 69 -~~~~~~~~~-~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~-y~l~ 145 (373)
T PLN03215 69 -RSYISRPGA-FLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREA-YQVL 145 (373)
T ss_pred -ccccccccc-eeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccce-EEEE
Confidence 000000000 0000000100 0113457877765432 569999999999887775322100000 00011 111
Q ss_pred eecCC---CCCe--EEEEEEEEecCCCCCCCCCceEEEEEc------CCCCceeecccCCcccccCCCCcceEeCccEEE
Q 048294 154 GRDPK---NNKY--KLVLIFTLWDEKNSDLYDFSQTAVYNL------STNSWRYFESFKSSHYHMPWYHDCVNLDGGCYW 222 (375)
Q Consensus 154 g~d~~---~~~y--kVv~~~~~~~~~~~~~~~~~~~~vyss------~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lyw 222 (375)
+.+.. ...| |++.. -...++ .....+.|+.- ..++|..++... .. .. +.++.+|.+|-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~--~~---~~-DIi~~kGkfYA 214 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVK-VKEGDN----HRDGVLGIGRDGKINYWDGNVLKALKQMG--YH---FS-DIIVHKGQTYA 214 (373)
T ss_pred ecccccccccceeEEEEEE-eecCCC----cceEEEEEeecCcEeeecCCeeeEccCCC--ce---ee-EEEEECCEEEE
Confidence 11100 0013 22221 111110 00112222211 136788776321 11 12 28999999998
Q ss_pred eeeeccCCceEEEEEECCCceeeeecCC--C----CCCCccceeEEecCeEEEEEecC---------------CCcEEEE
Q 048294 223 LLELRSNGHKVVLSFDLGDEVYEEIQGP--C----LPQSVYVVMGLYKECISLLVLKT---------------IEFCFEI 281 (375)
Q Consensus 223 l~~~~~~~~~~il~fDl~~e~~~~i~lP--~----~~~~~~~~l~~~~g~L~l~~~~~---------------~~~~~~i 281 (375)
+. ..+.+.++|.+- +.+.+..+ . +......++++..|+|.+|.... ....++|
T Consensus 215 vD-----~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~V 288 (373)
T PLN03215 215 LD-----SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKV 288 (373)
T ss_pred Ec-----CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEE
Confidence 85 335666666432 12222111 1 11112355778899999887731 1246899
Q ss_pred EEEcC--ceeeEEEEECCCC---CccccEEEe------ecCcEEEEecCCeEEEEeCCCCcEEEEEE--ecc-ceEEEEe
Q 048294 282 WTMKD--KEWTKKLTVGPFE---GMFHPLGFW------KTGGFFAENQSNQMILYDPRTEEMKNFGL--NSL-HFQVFNY 347 (375)
Q Consensus 282 W~l~~--~~W~~~~~i~~~~---~~~~~~~~~------~~~~ll~~~~~~~~~~yd~~~~~~~~v~~--~~~-~~~~~~y 347 (375)
+.++. ..|+++.+++-.. +....+++. -.++.++...+....+||++.++..-+.. ... .-+.-++
T Consensus 289 fklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~ 368 (373)
T PLN03215 289 YKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSIETTISESSQSSFEMF 368 (373)
T ss_pred EEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccceEeecCccccchheee
Confidence 99987 8999988876321 011112211 11344555567778899999999776543 211 2234567
Q ss_pred ecCcc
Q 048294 348 TETLI 352 (375)
Q Consensus 348 ~~SLv 352 (375)
++|++
T Consensus 369 ~~~~~ 373 (373)
T PLN03215 369 VPSFL 373 (373)
T ss_pred ccccC
Confidence 77653
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.87 E-value=5e-10 Score=72.75 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=36.8
Q ss_pred CCCchHHHHHHHHccCCccccceeeeccccchhhcCChHHHHH
Q 048294 5 TGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIRE 47 (375)
Q Consensus 5 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~ 47 (375)
+..||+|++.+||..||++++++++.|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 4689999999999999999999999999999999988865443
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.74 E-value=1.1e-06 Score=87.97 Aligned_cols=210 Identities=13% Similarity=0.014 Sum_probs=127.8
Q ss_pred EeeeecceEEEeeC-------CCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCC
Q 048294 103 AGGPYDGIFCILGN-------DNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKN 175 (375)
Q Consensus 103 ~~~s~nGLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 175 (375)
.++..+|-|.+..+ .+.+..+||.+++|..+|+++... ...+...+ + =||.+++.....
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-----~~~~~~~~--~-----g~IYviGG~~~~-- 363 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-----CRFSLAVI--D-----DTIYAIGGQNGT-- 363 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-----hceeEEEE--C-----CEEEEECCcCCC--
Confidence 44555665554432 135789999999999999887521 11111222 2 256666543221
Q ss_pred CCCCCCceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccC-------------------CceEEEE
Q 048294 176 SDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSN-------------------GHKVVLS 236 (375)
Q Consensus 176 ~~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~il~ 236 (375)
.....+++|+..+++|+.....+.+... .. .+.++|.+|-+...... ....+.+
T Consensus 364 ---~~~~sve~Ydp~~~~W~~~~~mp~~r~~---~~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ 436 (557)
T PHA02713 364 ---NVERTIECYTMGDDKWKMLPDMPIALSS---YG-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR 436 (557)
T ss_pred ---CCCceEEEEECCCCeEEECCCCCccccc---cc-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence 1234799999999999998865543321 22 78899999998742110 1346899
Q ss_pred EECCCceeeee-cCCCCCCCccceeEEecCeEEEEEecCCCcE-E-EEEEEcC---ceeeEEEEECCCCCccccEEEeec
Q 048294 237 FDLGDEVYEEI-QGPCLPQSVYVVMGLYKECISLLVLKTIEFC-F-EIWTMKD---KEWTKKLTVGPFEGMFHPLGFWKT 310 (375)
Q Consensus 237 fDl~~e~~~~i-~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~-~-~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~ 310 (375)
||+++++|+.+ ++|.... ...+.+++|+|.++++...... . .+-+.+. ..|+..-.++..... .... .-+
T Consensus 437 YDP~td~W~~v~~m~~~r~--~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-~~~~-~~~ 512 (557)
T PHA02713 437 YDTVNNIWETLPNFWTGTI--RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-LHTI-LHD 512 (557)
T ss_pred ECCCCCeEeecCCCCcccc--cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-ceeE-EEC
Confidence 99999999987 3333322 2335678999999987432111 1 2344444 379987766532211 1112 235
Q ss_pred CcEEEEec-CC--eEEEEeCCCCcEEEEEE
Q 048294 311 GGFFAENQ-SN--QMILYDPRTEEMKNFGL 337 (375)
Q Consensus 311 ~~ll~~~~-~~--~~~~yd~~~~~~~~v~~ 337 (375)
|.|++.-. ++ .+-.||++|++|+.+.-
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhh
Confidence 66655433 22 47799999999998753
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.70 E-value=4.5e-09 Score=68.61 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=38.2
Q ss_pred CCCchHHHHHHHHccCCccccceeeeccccchhhcCChHHHHHHh
Q 048294 5 TGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHL 49 (375)
Q Consensus 5 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~ 49 (375)
...||+|++.+||.+|+.+++++++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999998877653
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.67 E-value=2.7e-09 Score=67.06 Aligned_cols=39 Identities=31% Similarity=0.546 Sum_probs=36.9
Q ss_pred chHHHHHHHHccCCccccceeeeccccchhhcCChHHHH
Q 048294 8 FYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIR 46 (375)
Q Consensus 8 LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 46 (375)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.64 E-value=5.4e-06 Score=82.90 Aligned_cols=193 Identities=13% Similarity=0.118 Sum_probs=119.6
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeec
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFE 198 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 198 (375)
.++.+||.|++|..+|+++... ...+...+ + =++..++..... .....+++|+..+++|+...
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R-----~~~~~~~~--~-----~~lyv~GG~~~~-----~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPR-----KNPGVTVF--N-----NRIYVIGGIYNS-----ISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccc-----ccceEEEE--C-----CEEEEEeCCCCC-----EecceEEEEcCCCCceeeCC
Confidence 5889999999999999876421 11111221 1 245555443211 12457899999999999887
Q ss_pred ccCCcccccCCCCcceEeCccEEEeeeecc--CCceEEEEEECCCceeeee-cCCCCCCCccceeEEecCeEEEEEecCC
Q 048294 199 SFKSSHYHMPWYHDCVNLDGGCYWLLELRS--NGHKVVLSFDLGDEVYEEI-QGPCLPQSVYVVMGLYKECISLLVLKTI 275 (375)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fDl~~e~~~~i-~lP~~~~~~~~~l~~~~g~L~l~~~~~~ 275 (375)
..+.+.. ... ++.++|.+|-+..... .....+..||+.+.+|..+ ++|..... ......+|++.++.+...
T Consensus 375 ~lp~~r~---~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 375 PLIFPRY---NPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIYHDGKIYVIGGISY 448 (534)
T ss_pred CcCcCCc---cce-EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEEECCEEEEECCccC
Confidence 6543321 123 7888999999874211 1235789999999999987 34443321 224467899988876421
Q ss_pred Cc----EEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEec------CCeEEEEeCCCCcEEEEE
Q 048294 276 EF----CFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ------SNQMILYDPRTEEMKNFG 336 (375)
Q Consensus 276 ~~----~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~v~ 336 (375)
.. .-.+|+.+. ..|++.-.++... .....++ -++.+++.-. .+.+..||+++++|+.+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 11 223777776 8999865443221 1112222 2566655432 246899999999999875
No 10
>PLN02153 epithiospecifier protein
Probab=98.52 E-value=7.6e-05 Score=70.25 Aligned_cols=203 Identities=12% Similarity=0.113 Sum_probs=113.5
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeec
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFE 198 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 198 (375)
.++++||.+.+|..+|+.... |........+..+ + =|++.+...... .....+++|+..+++|+.+.
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~-p~~~~~~~~~~~~--~-----~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDV-PRISCLGVRMVAV--G-----TKLYIFGGRDEK-----REFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred cEEEEECCCCEEEEcCccCCC-CCCccCceEEEEE--C-----CEEEEECCCCCC-----CccCcEEEEECCCCEEEEec
Confidence 489999999999998865321 1100000110111 1 245555432211 12347899999999999876
Q ss_pred ccCC---cccccCCCCcceEeCccEEEeeeeccC-------CceEEEEEECCCceeeeecCCCCC-CC-ccceeEEecCe
Q 048294 199 SFKS---SHYHMPWYHDCVNLDGGCYWLLELRSN-------GHKVVLSFDLGDEVYEEIQGPCLP-QS-VYVVMGLYKEC 266 (375)
Q Consensus 199 ~~~~---~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fDl~~e~~~~i~lP~~~-~~-~~~~l~~~~g~ 266 (375)
.... +... .... .+..+|.+|-+...... .-..+.+||+.+.+|..++.+... .. ....+...+|+
T Consensus 118 ~~~~~~~p~~R-~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~ 195 (341)
T PLN02153 118 KLDEEGGPEAR-TFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK 195 (341)
T ss_pred cCCCCCCCCCc-eeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe
Confidence 4310 1111 1122 67889999988742111 113588999999999987543211 11 11234568999
Q ss_pred EEEEEecCC---------CcEEEEEEEcC--ceeeEEEEECC-CCCccccEEEeecCcEEEEec---------------C
Q 048294 267 ISLLVLKTI---------EFCFEIWTMKD--KEWTKKLTVGP-FEGMFHPLGFWKTGGFFAENQ---------------S 319 (375)
Q Consensus 267 L~l~~~~~~---------~~~~~iW~l~~--~~W~~~~~i~~-~~~~~~~~~~~~~~~ll~~~~---------------~ 319 (375)
+.++..... ...-++++++- .+|+++..... +......-++.-++.|++.-. .
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccccc
Confidence 988765310 01124666665 88998765431 111111111222345544322 1
Q ss_pred CeEEEEeCCCCcEEEEE
Q 048294 320 NQMILYDPRTEEMKNFG 336 (375)
Q Consensus 320 ~~~~~yd~~~~~~~~v~ 336 (375)
+.++.||+++++|+.+.
T Consensus 276 n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 276 NEGYALDTETLVWEKLG 292 (341)
T ss_pred ccEEEEEcCccEEEecc
Confidence 36899999999999885
No 11
>PLN02193 nitrile-specifier protein
Probab=98.49 E-value=2.6e-05 Score=76.60 Aligned_cols=202 Identities=9% Similarity=0.038 Sum_probs=117.3
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeec
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFE 198 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 198 (375)
.++++||.|.+|..+|+.... |....... .....+ =++..+...... .....+++|+..+++|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~-P~~~~~~~--~~v~~~-----~~lYvfGG~~~~-----~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV-PHLSCLGV--RMVSIG-----STLYVFGGRDAS-----RQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC-CCCcccce--EEEEEC-----CEEEEECCCCCC-----CCCccEEEEECCCCEEEEcC
Confidence 488999999999987754211 11000011 111111 134444332211 12347899999999999886
Q ss_pred cc---CCcccccCCCCcceEeCccEEEeeeec-cCCceEEEEEECCCceeeeecCCCCCCC--ccceeEEecCeEEEEEe
Q 048294 199 SF---KSSHYHMPWYHDCVNLDGGCYWLLELR-SNGHKVVLSFDLGDEVYEEIQGPCLPQS--VYVVMGLYKECISLLVL 272 (375)
Q Consensus 199 ~~---~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~il~fDl~~e~~~~i~lP~~~~~--~~~~l~~~~g~L~l~~~ 272 (375)
.. +.+.. ... .+..++.+|.+.... ......+.+||+.+.+|..++.|..... ....+...+|++.++..
T Consensus 261 ~~~~~P~~R~---~h~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 261 PVEEGPTPRS---FHS-MAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred cCCCCCCCcc---ceE-EEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 54 22211 122 677899999987321 1123468899999999998865432211 11234567899988876
Q ss_pred cCCCcEEEEEEEcC--ceeeEEEEECC-CCCccccEEEeecCcEEEEecC---------------CeEEEEeCCCCcEEE
Q 048294 273 KTIEFCFEIWTMKD--KEWTKKLTVGP-FEGMFHPLGFWKTGGFFAENQS---------------NQMILYDPRTEEMKN 334 (375)
Q Consensus 273 ~~~~~~~~iW~l~~--~~W~~~~~i~~-~~~~~~~~~~~~~~~ll~~~~~---------------~~~~~yd~~~~~~~~ 334 (375)
......-++|+++- .+|++...+.. +......-++.-++.|++.-.. +.+..||+++++|++
T Consensus 337 ~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 337 FNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred CCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEE
Confidence 43233356788876 88998865531 1111111122234555443221 248999999999998
Q ss_pred EEE
Q 048294 335 FGL 337 (375)
Q Consensus 335 v~~ 337 (375)
+..
T Consensus 417 ~~~ 419 (470)
T PLN02193 417 LDK 419 (470)
T ss_pred ccc
Confidence 863
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.48 E-value=1.7e-05 Score=79.30 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=132.8
Q ss_pred eEeeeecceEEEeeC-C------CeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCC
Q 048294 102 TAGGPYDGIFCILGN-D------NRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEK 174 (375)
Q Consensus 102 ~~~~s~nGLl~~~~~-~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 174 (375)
.-++..+|.|-...+ + +....+||.|.+|..+|++...+ ...++..+ ..++.++....+.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-----~~~~v~~l-------~g~iYavGG~dg~- 392 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-----SDFGVAVL-------DGKLYAVGGFDGE- 392 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-----ccceeEEE-------CCEEEEEeccccc-
Confidence 356677776655442 1 35899999999999999987632 11121222 3566666554432
Q ss_pred CCCCCCCceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeecc-C-CceEEEEEECCCceeeee-cCCC
Q 048294 175 NSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRS-N-GHKVVLSFDLGDEVYEEI-QGPC 251 (375)
Q Consensus 175 ~~~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~-~~~~il~fDl~~e~~~~i-~lP~ 251 (375)
..-..+|.|+..++.|........... ..+++.++|.+|-+..... . .-..+-+||+.+++|+.+ +++.
T Consensus 393 ----~~l~svE~YDp~~~~W~~va~m~~~r~----~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~ 464 (571)
T KOG4441|consen 393 ----KSLNSVECYDPVTNKWTPVAPMLTRRS----GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT 464 (571)
T ss_pred ----cccccEEEecCCCCcccccCCCCccee----eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc
Confidence 234579999999999999986654221 1128999999999985322 1 346899999999999987 4444
Q ss_pred CCCCccceeEEecCeEEEEEecCCCcEEE-EEEEcC--ceeeEEEEECCCCCccccEEEe-ecCcEEEEec------CCe
Q 048294 252 LPQSVYVVMGLYKECISLLVLKTIEFCFE-IWTMKD--KEWTKKLTVGPFEGMFHPLGFW-KTGGFFAENQ------SNQ 321 (375)
Q Consensus 252 ~~~~~~~~l~~~~g~L~l~~~~~~~~~~~-iW~l~~--~~W~~~~~i~~~~~~~~~~~~~-~~~~ll~~~~------~~~ 321 (375)
.... .-+..++|+|.++.+.+....++ +=..+. ..|+.+..+.... ...++. -++.+++.-. -..
T Consensus 465 ~R~~--~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 465 RRSG--FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR---SAVGVVVLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred cccc--ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc---ccccEEEECCEEEEEecccCccccce
Confidence 4322 22568899999998864322121 222333 8899885554332 112222 2344433321 245
Q ss_pred EEEEeCCCCcEEEEE
Q 048294 322 MILYDPRTEEMKNFG 336 (375)
Q Consensus 322 ~~~yd~~~~~~~~v~ 336 (375)
+-.||+++++|+...
T Consensus 540 ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 540 VECYDPETDTWTEVT 554 (571)
T ss_pred eEEcCCCCCceeeCC
Confidence 889999999999875
No 13
>PHA02713 hypothetical protein; Provisional
Probab=98.46 E-value=2.1e-05 Score=78.69 Aligned_cols=194 Identities=10% Similarity=0.087 Sum_probs=118.0
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeec
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFE 198 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 198 (375)
.+..+||.|++|..+++++... ...+...+ + =+|..++..... ......++.|+..++.|+..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-----~~~~~a~l--~-----~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-----INYASAIV--D-----NEIIIAGGYNFN----NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-----cceEEEEE--C-----CEEEEEcCCCCC----CCccceEEEEECCCCeEeeCC
Confidence 3678999999999999876521 11110111 1 255555432111 112457899999999999887
Q ss_pred ccCCcccccCCCCcceEeCccEEEeeeec-cCCceEEEEEECCCceeeee-cCCCCCCCccceeEEecCeEEEEEecCCC
Q 048294 199 SFKSSHYHMPWYHDCVNLDGGCYWLLELR-SNGHKVVLSFDLGDEVYEEI-QGPCLPQSVYVVMGLYKECISLLVLKTIE 276 (375)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~il~fDl~~e~~~~i-~lP~~~~~~~~~l~~~~g~L~l~~~~~~~ 276 (375)
..+.+... .. .+.++|.+|-+.... ......+-+||+.+.+|..+ ++|..... .....++|+|.++.+....
T Consensus 337 ~m~~~R~~---~~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~--~~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 337 PMIKNRCR---FS-LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS--YGMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred CCcchhhc---ee-EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc--ccEEEECCEEEEEeCCCcc
Confidence 65433211 22 789999999998431 11234689999999999987 44444322 2244789999998774311
Q ss_pred c-------------------EEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEecC-------CeEEEEeCC
Q 048294 277 F-------------------CFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQS-------NQMILYDPR 328 (375)
Q Consensus 277 ~-------------------~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~yd~~ 328 (375)
. .-.+...+. ..|+..-.+..... ...+ +.-+|.|++.-.. ..+..||++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcE-EEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 0 123555554 78987665443221 1122 2335666554321 236789999
Q ss_pred C-CcEEEEE
Q 048294 329 T-EEMKNFG 336 (375)
Q Consensus 329 ~-~~~~~v~ 336 (375)
+ ++|+.+.
T Consensus 489 ~~~~W~~~~ 497 (557)
T PHA02713 489 TYNGWELIT 497 (557)
T ss_pred CCCCeeEcc
Confidence 9 8999876
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.37 E-value=7.2e-05 Score=73.68 Aligned_cols=184 Identities=9% Similarity=0.064 Sum_probs=112.7
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeec
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFE 198 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 198 (375)
....+||.+++|..+|+++... ...+... .+ =++..+..... ...++.|+..+++|...+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r-----~~~~~v~--~~-----~~iYviGG~~~--------~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPR-----LYASGVP--AN-----NKLYVVGGLPN--------PTSVERWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchh-----hcceEEE--EC-----CEEEEECCcCC--------CCceEEEECCCCeEEECC
Confidence 4778999999999999886521 1111111 11 25555544221 235899999999999887
Q ss_pred ccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCceeeeecCCCCCCCccceeEEecCeEEEEEecCCCcE
Q 048294 199 SFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFC 278 (375)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 278 (375)
..+.+... .. ++.++|.+|-+.... .....+-+||+.+++|+.++.+..... .......+|+|.++...
T Consensus 348 ~l~~~r~~---~~-~~~~~g~IYviGG~~-~~~~~ve~ydp~~~~W~~~~~m~~~r~-~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 348 SLLKPRCN---PA-VASINNVIYVIGGHS-ETDTTTEYLLPNHDQWQFGPSTYYPHY-KSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred CCCCCCcc---cE-EEEECCEEEEecCcC-CCCccEEEEeCCCCEEEeCCCCCCccc-cceEEEECCEEEEECCc-----
Confidence 65433221 22 789999999987421 123457889999999998743322211 12345789999887642
Q ss_pred EEEEEEcCceeeEEEEECCCCCccccEEEeecCcEEEEec------CCeEEEEeCCCCcEEEE
Q 048294 279 FEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ------SNQMILYDPRTEEMKNF 335 (375)
Q Consensus 279 ~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~v 335 (375)
.++.-.+...|+..-.+..... ..-.+.-+|.|++.-+ ...+-.||+++++|+-.
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~--~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRD--NPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCcc--ccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3333233388997765543221 1112223556655422 13578999999999753
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.29 E-value=0.0003 Score=65.67 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCc----eeecccCCcccccCCCCcceEeCccEEEeeeec-cCCceEEEEEECCCceeeeec-CCCCCC
Q 048294 181 FSQTAVYNLSTNSW----RYFESFKSSHYHMPWYHDCVNLDGGCYWLLELR-SNGHKVVLSFDLGDEVYEEIQ-GPCLPQ 254 (375)
Q Consensus 181 ~~~~~vyss~~~~W----r~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~il~fDl~~e~~~~i~-lP~~~~ 254 (375)
...++.|+..++.| +..+..+.+.. ... ++.++|.+|-+.... ......+.+||+.+++|+.++ +|....
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~---~~~-~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFE---NGS-ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCcc---Cce-EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 45788999999988 44443332221 122 788899999987421 112457899999999999884 564322
Q ss_pred CccceeEEecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEE
Q 048294 255 SVYVVMGLYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTV 295 (375)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i 295 (375)
. ...+...+++|.++.........++|+.+- .+|++.-.+
T Consensus 163 ~-~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 163 V-QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred C-cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC
Confidence 1 233457899999988754333456777776 789876543
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.20 E-value=6.9e-05 Score=74.99 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=122.6
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeec
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFE 198 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 198 (375)
.+...||.+++|..+.+++.... . .+.+.- .-+|..+...... ......++.|+..+++|...+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~-----~---~~~~~~----~~~lYv~GG~~~~----~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRC-----R---VGVAVL----NGKLYVVGGYDSG----SDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccc-----c---ccEEEE----CCEEEEEccccCC----CcccceEEEecCCCCceeccC
Confidence 47789999999999998886321 1 222211 1156665544311 124578999999999999977
Q ss_pred ccCCcccccCCCCcceEeCccEEEeeeec-cCCceEEEEEECCCceeeeec-CCCCCCCccceeEEecCeEEEEEecCCC
Q 048294 199 SFKSSHYHMPWYHDCVNLDGGCYWLLELR-SNGHKVVLSFDLGDEVYEEIQ-GPCLPQSVYVVMGLYKECISLLVLKTIE 276 (375)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~il~fDl~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~~~ 276 (375)
........ -. .+.++|.+|-+.... ...-..+-.||..+.+|..+. ++... .. .-..+++|+|+++.+....
T Consensus 366 ~M~~~R~~---~~-v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~~-~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 366 PMNTKRSD---FG-VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-SG-HGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred CccCcccc---ce-eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-ee-eEEEEECCEEEEEcCcCCC
Confidence 66433221 12 799999999999543 223446999999999999884 44422 11 2245789999999885433
Q ss_pred cE--EEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEec------CCeEEEEeCCCCcEEEEE
Q 048294 277 FC--FEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ------SNQMILYDPRTEEMKNFG 336 (375)
Q Consensus 277 ~~--~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~v~ 336 (375)
.. -.+=.-+. ..|+..-.+........ +++. ++.|+..-+ -..+-.||+++++|..+.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 21 11222222 88998877764332211 2222 445544432 223788999999999986
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.01 E-value=0.0022 Score=60.47 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=127.4
Q ss_pred eecceEEEeeC--CCeEEEEcc--cccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCC-CCCCC
Q 048294 106 PYDGIFCILGN--DNRLTLWNP--ANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKN-SDLYD 180 (375)
Q Consensus 106 s~nGLl~~~~~--~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~~~~~ 180 (375)
..++-|-+..+ ...+++.++ .+++|..+|+++.. ++ .......+ + =+|..+........ .....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~R---~~~~~~~~--~-----~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG-PR---NQAVAAAI--D-----GKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC-Cc---ccceEEEE--C-----CEEEEEeCCCCCCCCCccee
Confidence 34554444332 234777774 67899999987631 11 11111111 1 25555544321100 00011
Q ss_pred CceEEEEEcCCCCceeecccCCcccccCCCCcce-EeCccEEEeeeeccC------------------------------
Q 048294 181 FSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCV-NLDGGCYWLLELRSN------------------------------ 229 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~------------------------------ 229 (375)
...++.|+..+++|+.+.... +... ....++ .++|.+|-+......
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~-p~~~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRS-PVGL--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred cccEEEEECCCCEEecCCCCC-CCcc--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 347899999999999987322 2111 111023 579999988732100
Q ss_pred -----CceEEEEEECCCceeeee-cCCCCCCCccceeEEecCeEEEEEecCC--CcEEEEEEEc--C--ceeeEEEEECC
Q 048294 230 -----GHKVVLSFDLGDEVYEEI-QGPCLPQSVYVVMGLYKECISLLVLKTI--EFCFEIWTMK--D--KEWTKKLTVGP 297 (375)
Q Consensus 230 -----~~~~il~fDl~~e~~~~i-~lP~~~~~~~~~l~~~~g~L~l~~~~~~--~~~~~iW~l~--~--~~W~~~~~i~~ 297 (375)
....+.+||+.+.+|+.+ ++|..... ...+...+|+|.++..... ....++|..+ . ..|++.-.++.
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLGTA-GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccCCCCcCC-CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 015789999999999988 44532221 1234567999999887431 2235566654 2 58998766543
Q ss_pred CCC-----ccccEEEeecCcEEEEecC-----------------------CeEEEEeCCCCcEEEEE-Eecc--ceEEEE
Q 048294 298 FEG-----MFHPLGFWKTGGFFAENQS-----------------------NQMILYDPRTEEMKNFG-LNSL--HFQVFN 346 (375)
Q Consensus 298 ~~~-----~~~~~~~~~~~~ll~~~~~-----------------------~~~~~yd~~~~~~~~v~-~~~~--~~~~~~ 346 (375)
... ......+.-+++|++.-.. ..+-.||+++++|+.+. ++.. ...+..
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~ 319 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVS 319 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEE
Confidence 211 1111122335666554221 13568999999999875 3222 223334
Q ss_pred eecCcccCCCC
Q 048294 347 YTETLIPIKGD 357 (375)
Q Consensus 347 y~~SLv~l~~~ 357 (375)
.-..|.-+.+.
T Consensus 320 ~~~~iyv~GG~ 330 (346)
T TIGR03547 320 WNNGVLLIGGE 330 (346)
T ss_pred cCCEEEEEecc
Confidence 45555555543
No 18
>PHA03098 kelch-like protein; Provisional
Probab=97.92 E-value=0.0009 Score=67.01 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=104.5
Q ss_pred EeeeecceEEEeeC------CCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCC
Q 048294 103 AGGPYDGIFCILGN------DNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNS 176 (375)
Q Consensus 103 ~~~s~nGLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 176 (375)
-..+.+|-|.+..+ .+.+.++||.|++|..+|+.+... ...+ +...+ =++..+......
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-----~~~~--~~~~~-----~~iYv~GG~~~~--- 401 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-----YNPC--VVNVN-----NLIYVIGGISKN--- 401 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-----ccce--EEEEC-----CEEEEECCcCCC---
Confidence 44556676554432 135789999999999998876521 1111 11111 145555432111
Q ss_pred CCCCCceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccC----CceEEEEEECCCceeeeec-CCC
Q 048294 177 DLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSN----GHKVVLSFDLGDEVYEEIQ-GPC 251 (375)
Q Consensus 177 ~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----~~~~il~fDl~~e~~~~i~-lP~ 251 (375)
......+++|+..+++|+.....+.+.. ... ++..+|.+|-+...... ....+.+||+++++|+.++ +|.
T Consensus 402 -~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 476 (534)
T PHA03098 402 -DELLKTVECFSLNTNKWSKGSPLPISHY---GGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF 476 (534)
T ss_pred -CcccceEEEEeCCCCeeeecCCCCcccc---Cce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc
Confidence 0123578999999999998875543321 123 78889999988742111 1235899999999999874 333
Q ss_pred CCCCccceeEEecCeEEEEEecCCCc-EEEEEEEcC--ceeeEEEEEC
Q 048294 252 LPQSVYVVMGLYKECISLLVLKTIEF-CFEIWTMKD--KEWTKKLTVG 296 (375)
Q Consensus 252 ~~~~~~~~l~~~~g~L~l~~~~~~~~-~~~iW~l~~--~~W~~~~~i~ 296 (375)
... ...+...+|++.++.+..... .-.+|+.+. ..|......+
T Consensus 477 ~r~--~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 477 PRI--NASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred ccc--cceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 221 122446799998887643221 345777765 8898776544
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.89 E-value=0.0025 Score=60.85 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=127.1
Q ss_pred eeeecceEEEeeC--CCeEEEEccc--ccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCC-CCCC
Q 048294 104 GGPYDGIFCILGN--DNRLTLWNPA--NKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEK-NSDL 178 (375)
Q Consensus 104 ~~s~nGLl~~~~~--~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-~~~~ 178 (375)
.+..++-|.+..+ ...+++.++. +++|..+|+.+.. ++ .....+.. + =++..+....... ....
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r---~~~~~v~~--~-----~~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PR---EQAVAAFI--D-----GKLYVFGGIGKTNSEGSP 102 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-Cc---ccceEEEE--C-----CEEEEEcCCCCCCCCCce
Confidence 3445665555332 2346777765 5789999876531 11 11110111 1 1344443321100 0000
Q ss_pred CCCceEEEEEcCCCCceeecccCCcccccCCCCcceE-eCccEEEeeeeccC----------------------------
Q 048294 179 YDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVN-LDGGCYWLLELRSN---------------------------- 229 (375)
Q Consensus 179 ~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~---------------------------- 229 (375)
.....+++|+..+++|+.+.... +... .... ++. .+|.+|-+......
T Consensus 103 ~~~~~v~~YD~~~n~W~~~~~~~-p~~~-~~~~-~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKLDTRS-PVGL-AGHV-AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred eEcccEEEEeCCCCEEEeCCCCC-CCcc-cceE-EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 11347899999999999987421 2211 1111 343 79999999742100
Q ss_pred -------CceEEEEEECCCceeeeec-CCCCCCCccceeEEecCeEEEEEecC--CCcEEEEEEEc--C--ceeeEEEEE
Q 048294 230 -------GHKVVLSFDLGDEVYEEIQ-GPCLPQSVYVVMGLYKECISLLVLKT--IEFCFEIWTMK--D--KEWTKKLTV 295 (375)
Q Consensus 230 -------~~~~il~fDl~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l~--~--~~W~~~~~i 295 (375)
....+.+||+.+.+|..+. +|...... ..+...+++|.++.... .....++|..+ . ..|+++..+
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~-~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG-SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc-ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 1246999999999999873 55322221 23456799999988742 12346667543 2 789988766
Q ss_pred CCCCC------ccccEEEeecCcEEEEecC-----------------------CeEEEEeCCCCcEEEEE-Eecc--ceE
Q 048294 296 GPFEG------MFHPLGFWKTGGFFAENQS-----------------------NQMILYDPRTEEMKNFG-LNSL--HFQ 343 (375)
Q Consensus 296 ~~~~~------~~~~~~~~~~~~ll~~~~~-----------------------~~~~~yd~~~~~~~~v~-~~~~--~~~ 343 (375)
+.... .....+..-++.|++.-.. ..+-.||+++++|+.+. ++.. ...
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~ 338 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGV 338 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceE
Confidence 53211 1111122234555544211 02347999999999875 2221 223
Q ss_pred EEEeecCcccCCCC
Q 048294 344 VFNYTETLIPIKGD 357 (375)
Q Consensus 344 ~~~y~~SLv~l~~~ 357 (375)
+...-..|.-+.+.
T Consensus 339 av~~~~~iyv~GG~ 352 (376)
T PRK14131 339 SVSWNNGVLLIGGE 352 (376)
T ss_pred EEEeCCEEEEEcCC
Confidence 44455555555543
No 20
>PLN02153 epithiospecifier protein
Probab=97.88 E-value=0.0021 Score=60.41 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCceeecccC-CcccccCCCCcceEeCccEEEeeeecc-CCceEEEEEECCCceeeeec-C-----CCCC
Q 048294 182 SQTAVYNLSTNSWRYFESFK-SSHYHMPWYHDCVNLDGGCYWLLELRS-NGHKVVLSFDLGDEVYEEIQ-G-----PCLP 253 (375)
Q Consensus 182 ~~~~vyss~~~~Wr~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fDl~~e~~~~i~-l-----P~~~ 253 (375)
..+.+|+..+++|+...... .+........ .+.++|.+|-+..... .....+.+||+.+.+|..++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVR-MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceE-EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 46899999999999876432 1111001122 6888999999874211 12246889999999999874 2 2222
Q ss_pred CCccceeEEecCeEEEEEecCCC-------cEEEEEEEcC--ceeeEEEEECC-CCC-ccccEEEeecCcEEEEec----
Q 048294 254 QSVYVVMGLYKECISLLVLKTIE-------FCFEIWTMKD--KEWTKKLTVGP-FEG-MFHPLGFWKTGGFFAENQ---- 318 (375)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~-------~~~~iW~l~~--~~W~~~~~i~~-~~~-~~~~~~~~~~~~ll~~~~---- 318 (375)
. .......+++|.++...... ..-++|+.+- ..|.+.-.... ... .....++ -++++++.-.
T Consensus 129 ~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 T--FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred e--eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 1 12244678998888774311 1125677665 88997654321 111 1112222 2455544311
Q ss_pred ----------CCeEEEEeCCCCcEEEEEE
Q 048294 319 ----------SNQMILYDPRTEEMKNFGL 337 (375)
Q Consensus 319 ----------~~~~~~yd~~~~~~~~v~~ 337 (375)
...+..||+++++|+++..
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccc
Confidence 2468999999999999864
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=97.87 E-value=0.0011 Score=65.30 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=106.2
Q ss_pred CceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCceeeee-cCCCCCCCccce
Q 048294 181 FSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEI-QGPCLPQSVYVV 259 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i-~lP~~~~~~~~~ 259 (375)
...++.|+..+++|..++..+.+... .. ++.++|.+|-+.... ....+-.||+.+++|..+ ++|.... ...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~---~~-~v~~~~~iYviGG~~--~~~sve~ydp~~n~W~~~~~l~~~r~--~~~ 357 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRLY---AS-GVPANNKLYVVGGLP--NPTSVERWFHGDAAWVNMPSLLKPRC--NPA 357 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhhc---ce-EEEECCEEEEECCcC--CCCceEEEECCCCeEEECCCCCCCCc--ccE
Confidence 35688999999999999876543322 22 788999999998421 224578999999999887 4443332 123
Q ss_pred eEEecCeEEEEEecCC-CcEEEEEEEcCceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcEEEEE-E
Q 048294 260 MGLYKECISLLVLKTI-EFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFG-L 337 (375)
Q Consensus 260 l~~~~g~L~l~~~~~~-~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~v~-~ 337 (375)
...++|+|.++.+... ...++.+-.+...|+..-.++.. ......+.-+|.|++. ++..-.||+++++|+.+. +
T Consensus 358 ~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--r~~~~~~~~~~~IYv~--GG~~e~ydp~~~~W~~~~~m 433 (480)
T PHA02790 358 VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--HYKSCALVFGRRLFLV--GRNAEFYCESSNTWTLIDDP 433 (480)
T ss_pred EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--cccceEEEECCEEEEE--CCceEEecCCCCcEeEcCCC
Confidence 4578999999987532 23455554444899886444322 1122223345666554 245788999999999886 3
Q ss_pred ecc--ceEEEEeecCcccCCCCC
Q 048294 338 NSL--HFQVFNYTETLIPIKGDD 358 (375)
Q Consensus 338 ~~~--~~~~~~y~~SLv~l~~~~ 358 (375)
... ...+..+-..+--+++.+
T Consensus 434 ~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 434 IYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCccccEEEEECCEEEEECCcC
Confidence 221 345556666666665543
No 22
>PLN02193 nitrile-specifier protein
Probab=97.68 E-value=0.0049 Score=60.59 Aligned_cols=177 Identities=9% Similarity=0.118 Sum_probs=103.2
Q ss_pred EeeeecceEEEeeC------CCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCC
Q 048294 103 AGGPYDGIFCILGN------DNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNS 176 (375)
Q Consensus 103 ~~~s~nGLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 176 (375)
.....++.|.+..+ .+.++++||.|.+|..+++.... |. .+.... + ... .=|++.+......
T Consensus 223 ~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~-P~-~R~~h~-~-~~~-----~~~iYv~GG~~~~--- 290 (470)
T PLN02193 223 RMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG-PT-PRSFHS-M-AAD-----EENVYVFGGVSAT--- 290 (470)
T ss_pred EEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC-CC-CccceE-E-EEE-----CCEEEEECCCCCC---
Confidence 34556666554432 13589999999999999875321 10 011111 1 111 1245555432221
Q ss_pred CCCCCceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCceeeeecC----CCC
Q 048294 177 DLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQG----PCL 252 (375)
Q Consensus 177 ~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~l----P~~ 252 (375)
.....+++|+..+++|+.+.............. .+.++|.+|.+..........+.+||+.+.+|+.++. |..
T Consensus 291 --~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~-~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~ 367 (470)
T PLN02193 291 --ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAG-LEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE 367 (470)
T ss_pred --CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcE-EEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC
Confidence 123468899999999998764311100101122 6778999998873211224679999999999998742 322
Q ss_pred CCCccceeEEecCeEEEEEecCC--------C--cEEEEEEEcC--ceeeEEEEEC
Q 048294 253 PQSVYVVMGLYKECISLLVLKTI--------E--FCFEIWTMKD--KEWTKKLTVG 296 (375)
Q Consensus 253 ~~~~~~~l~~~~g~L~l~~~~~~--------~--~~~~iW~l~~--~~W~~~~~i~ 296 (375)
.. .......+++|.++..... . ..-++|+++- ..|+++..+.
T Consensus 368 R~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 368 RS--VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred cc--eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 21 1223467899888877421 0 1126899998 7899876554
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.68 E-value=0.0093 Score=56.93 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=85.1
Q ss_pred ceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeecc----CCceEEEEEECCCceeeee-cCCCCCCC-
Q 048294 182 SQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRS----NGHKVVLSFDLGDEVYEEI-QGPCLPQS- 255 (375)
Q Consensus 182 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~il~fDl~~e~~~~i-~lP~~~~~- 255 (375)
..+++|+..++.|+..+..+.... .... .+.++|.+|.+..... ........||.++.+|..+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~--~~~a-~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGT--AGSA-VVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCC--Ccce-EEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 479999999999998875542111 1122 6778999999984311 1223456678889999877 45543321
Q ss_pred ---cc-c-eeEEecCeEEEEEecCCC--------------------cEEEEEEEcCceeeEEEEECCCCCccccEEEeec
Q 048294 256 ---VY-V-VMGLYKECISLLVLKTIE--------------------FCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKT 310 (375)
Q Consensus 256 ---~~-~-~l~~~~g~L~l~~~~~~~--------------------~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 310 (375)
.. . .....+|+|.++...... ...+++-.+...|++.-.++... ....++.-+
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~~av~~~ 343 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYGVSVSWN 343 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cceEEEEeC
Confidence 11 1 134679999888764211 12344444447898765544321 122233345
Q ss_pred CcEEEEec-------CCeEEEEeCCCCcEE
Q 048294 311 GGFFAENQ-------SNQMILYDPRTEEMK 333 (375)
Q Consensus 311 ~~ll~~~~-------~~~~~~yd~~~~~~~ 333 (375)
++|++.-. ...+..|+++++++.
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 66655432 125777777776654
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.57 E-value=0.0053 Score=57.28 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=88.1
Q ss_pred EeeeecceEEEeeC------CCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCC
Q 048294 103 AGGPYDGIFCILGN------DNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNS 176 (375)
Q Consensus 103 ~~~s~nGLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 176 (375)
..+..+|.|-+..+ ...+.++||.|.+|..+|+.+.. ++ .... ....+ =|+..+......
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r---~~~~--~~~~~-----~~iYv~GG~~~~--- 183 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PR---VQPV--CVKLQ-----NELYVFGGGSNI--- 183 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CC---Ccce--EEEEC-----CEEEEEcCCCCc---
Confidence 44566776655432 13589999999999999865431 11 1111 11111 145554432211
Q ss_pred CCCCCceEEEEEcCCCCceeecccCC---cccccCCCCcceEeCccEEEeeeeccC------------------------
Q 048294 177 DLYDFSQTAVYNLSTNSWRYFESFKS---SHYHMPWYHDCVNLDGGCYWLLELRSN------------------------ 229 (375)
Q Consensus 177 ~~~~~~~~~vyss~~~~Wr~~~~~~~---~~~~~~~~~~~v~~~G~lywl~~~~~~------------------------ 229 (375)
....+++|+..+++|+.+..... +........ .+..+|.+|-+......
T Consensus 184 ---~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 184 ---AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS-IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred ---cccceEEEecCCCeeEECCCCCCCCCceeccceeE-EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 12346899999999998875421 111111111 34457899988732100
Q ss_pred ---------CceEEEEEECCCceeeeec-CCCCCCCccceeEEecCeEEEEEec
Q 048294 230 ---------GHKVVLSFDLGDEVYEEIQ-GPCLPQSVYVVMGLYKECISLLVLK 273 (375)
Q Consensus 230 ---------~~~~il~fDl~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~ 273 (375)
-...+.+||+.+++|+.+. +|..... ...+...+++|.++...
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~-~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC-GAALLLTGNNIFSINGE 312 (323)
T ss_pred hCCCccccCcCceEEEEECCCCeeeEcccccccccC-chheEEECCEEEEEecc
Confidence 0246999999999999885 4432211 12356789999988874
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=3.6e-05 Score=68.43 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=37.6
Q ss_pred cCCCchHHHHHHHHccCCccccceeeeccccchhhcCChHH
Q 048294 4 STGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMF 44 (375)
Q Consensus 4 ~~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F 44 (375)
+...|||||+..||+.||.|+|+++..|||+|+++.++...
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 45789999999999999999999999999999999987654
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.95 E-value=0.046 Score=48.09 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeecc----------CCceEEEEEECCCceeeeec--
Q 048294 181 FSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRS----------NGHKVVLSFDLGDEVYEEIQ-- 248 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----------~~~~~il~fDl~~e~~~~i~-- 248 (375)
...+++++..|-+||.+...-.|..|..... ++.++|.+|-...+.. .-.+.|++||+.++.|..-+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 3467788888999999876544444433344 7888999999885311 12457999999999997652
Q ss_pred --CCCCCCCccceeEEecCeEEEEEecC---CCcEEEEEEEcC--ceeeEEEEEC
Q 048294 249 --GPCLPQSVYVVMGLYKECISLLVLKT---IEFCFEIWTMKD--KEWTKKLTVG 296 (375)
Q Consensus 249 --lP~~~~~~~~~l~~~~g~L~l~~~~~---~~~~~~iW~l~~--~~W~~~~~i~ 296 (375)
.|.+.... ..-.++|++.+....+ +.-.-++|..+. ..|.+...-+
T Consensus 235 ~~~P~GRRSH--S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 235 TMKPGGRRSH--STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred CcCCCccccc--ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccC
Confidence 22222221 1236899998887753 223458899988 7898876544
No 27
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.80 E-value=0.068 Score=50.31 Aligned_cols=149 Identities=9% Similarity=0.067 Sum_probs=86.6
Q ss_pred eEEEEEc--CCCCceeecccC-CcccccCCCCcceEeCccEEEeeeeccC-------CceEEEEEECCCceeeeecCCCC
Q 048294 183 QTAVYNL--STNSWRYFESFK-SSHYHMPWYHDCVNLDGGCYWLLELRSN-------GHKVVLSFDLGDEVYEEIQGPCL 252 (375)
Q Consensus 183 ~~~vyss--~~~~Wr~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fDl~~e~~~~i~lP~~ 252 (375)
.+.+|++ .+++|+.....+ .+.. ... .+.++|.+|-+...... ....+.+||+.+.+|+.+..|..
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~---~~~-~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p 105 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRN---QAV-AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSP 105 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcc---cce-EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCC
Confidence 5778886 467899988654 2221 123 78899999999843111 12458899999999999863322
Q ss_pred CCCccc-eeEEecCeEEEEEecCCC-----------------------------------cEEEEEEEcC--ceeeEEEE
Q 048294 253 PQSVYV-VMGLYKECISLLVLKTIE-----------------------------------FCFEIWTMKD--KEWTKKLT 294 (375)
Q Consensus 253 ~~~~~~-~l~~~~g~L~l~~~~~~~-----------------------------------~~~~iW~l~~--~~W~~~~~ 294 (375)
...... .....+|+|.++...... ..-.+|+.+- ..|++.-.
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc
Confidence 211111 222579999988764211 0125677765 88998765
Q ss_pred ECCCCCccccEEEeecCcEEEEecC-------CeEEEE--eCCCCcEEEEE
Q 048294 295 VGPFEGMFHPLGFWKTGGFFAENQS-------NQMILY--DPRTEEMKNFG 336 (375)
Q Consensus 295 i~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~y--d~~~~~~~~v~ 336 (375)
++.... ...-.+.-++.|++.-.. ..+..| |+++++|+++.
T Consensus 186 ~p~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 186 NPFLGT-AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred CCCCcC-CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence 542111 122222335666554221 124445 45677898775
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.58 E-value=0.098 Score=46.12 Aligned_cols=212 Identities=12% Similarity=0.119 Sum_probs=113.8
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEE---ecCCCCCCCCCceEEEEEcCCCCce
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTL---WDEKNSDLYDFSQTAVYNLSTNSWR 195 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~---~~~~~~~~~~~~~~~vyss~~~~Wr 195 (375)
.+.|.|-.+-+|..+|+.-.... ....+...-..-| ...||.+... .+..+..........-|+.++..|+
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~-i~~~yp~VPyqRY-----GHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~ 118 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKAT-IESPYPAVPYQRY-----GHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWK 118 (392)
T ss_pred eeEEeeccceeEEecCccccccc-ccCCCCccchhhc-----CceEEEEcceEEEEcCccCcccccceeeeecccccccc
Confidence 37899999999999998422100 0001111000111 1222222111 0110111223556778999999999
Q ss_pred eeccc--CCcccccCCCCcceEeCccEEEeeeec---cCCceEEEEEECCCceeeeecC---CCCCCCccceeEEecCeE
Q 048294 196 YFESF--KSSHYHMPWYHDCVNLDGGCYWLLELR---SNGHKVVLSFDLGDEVYEEIQG---PCLPQSVYVVMGLYKECI 267 (375)
Q Consensus 196 ~~~~~--~~~~~~~~~~~~~v~~~G~lywl~~~~---~~~~~~il~fDl~~e~~~~i~l---P~~~~~~~~~l~~~~g~L 267 (375)
..+.. .++... . .. +++.+..+|-..... ..-...+-.||+.+.+|++|.. |+.-.+.+ ...+++|.+
T Consensus 119 ~p~v~G~vPgaRD-G-Hs-AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH-~a~~~~~~M 194 (392)
T KOG4693|consen 119 KPEVEGFVPGARD-G-HS-ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH-TASVIDGMM 194 (392)
T ss_pred ccceeeecCCccC-C-ce-eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh-hhhhccceE
Confidence 87633 222111 1 12 667777888776321 1224568899999999999843 43322211 123556777
Q ss_pred EEEEecC----------CCcEEEEEEEcC--ceeeEEEEECCCC-CccccEEEeecCcEEEEec--------CCeEEEEe
Q 048294 268 SLLVLKT----------IEFCFEIWTMKD--KEWTKKLTVGPFE-GMFHPLGFWKTGGFFAENQ--------SNQMILYD 326 (375)
Q Consensus 268 ~l~~~~~----------~~~~~~iW~l~~--~~W~~~~~i~~~~-~~~~~~~~~~~~~ll~~~~--------~~~~~~yd 326 (375)
.+...+. +.-.-+|-.|+- +.|.....-.... +-.....+.=+|++.+.-. -+.++.||
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~Fd 274 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFD 274 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecc
Confidence 7666542 112234555555 7888763322211 1222223334566644422 35699999
Q ss_pred CCCCcEEEEEEecc
Q 048294 327 PRTEEMKNFGLNSL 340 (375)
Q Consensus 327 ~~~~~~~~v~~~~~ 340 (375)
++|..|+.|...|+
T Consensus 275 P~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 275 PKTSMWSVISVRGK 288 (392)
T ss_pred cccchheeeeccCC
Confidence 99999999998776
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.55 E-value=0.09 Score=49.14 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=110.8
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEE-EecCCC-CCCCCCceEEEEEcCCCCcee
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFT-LWDEKN-SDLYDFSQTAVYNLSTNSWRY 196 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~~~~~~-~~~~~~~~~~vyss~~~~Wr~ 196 (375)
.+|.+|--+.+|+.+-.+....|+ + + ......++. .+.+.. ....++ +.-...-..-+|++.+..|..
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pR---s--s-hq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPR---S--S-HQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCC---c--c-ceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 489999999999987665543332 1 1 111112222 122211 111110 001112345689999999999
Q ss_pred ecccCCcccccCCCCcceEeCccEEEeeee-c----cCCceEEEEEECCCceeeeecCCCCC-CCc-cceeEEe-cCeEE
Q 048294 197 FESFKSSHYHMPWYHDCVNLDGGCYWLLEL-R----SNGHKVVLSFDLGDEVYEEIQGPCLP-QSV-YVVMGLY-KECIS 268 (375)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~-~----~~~~~~il~fDl~~e~~~~i~lP~~~-~~~-~~~l~~~-~g~L~ 268 (375)
+...-.|... +..+ .|...-.+.-+... + ..--+-+.+||+++=+|+.+..+-.. ... ...+.+. .|.+.
T Consensus 169 l~~~g~PS~R-SGHR-MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~ 246 (521)
T KOG1230|consen 169 LEFGGGPSPR-SGHR-MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV 246 (521)
T ss_pred eccCCCCCCC-ccce-eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence 8744211110 0011 22222222222210 0 11133589999999999998664421 111 1223344 78887
Q ss_pred EEEecC----------CCcEEEEEEEcC-------ceeeEEEEECCC--CCccccEEEeecCcEEEEe------------
Q 048294 269 LLVLKT----------IEFCFEIWTMKD-------KEWTKKLTVGPF--EGMFHPLGFWKTGGFFAEN------------ 317 (375)
Q Consensus 269 l~~~~~----------~~~~~~iW~l~~-------~~W~~~~~i~~~--~~~~~~~~~~~~~~ll~~~------------ 317 (375)
+..... ....-++|.|+. -.|.++-.++.. ......+++++++.-++.-
T Consensus 247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl 326 (521)
T KOG1230|consen 247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESL 326 (521)
T ss_pred EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhh
Confidence 776632 234578999987 367777665532 2233345566664433221
Q ss_pred ---cCCeEEEEeCCCCcEEEEEEec
Q 048294 318 ---QSNQMILYDPRTEEMKNFGLNS 339 (375)
Q Consensus 318 ---~~~~~~~yd~~~~~~~~v~~~~ 339 (375)
-.+.|+.||+..++|.+-++.+
T Consensus 327 ~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 327 SGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhhheecccchhhHhhhcc
Confidence 1356999999999998877654
No 30
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.06 E-value=0.0015 Score=58.56 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHccCC-----ccccceeeeccccchhhcCChHHHHHHh
Q 048294 5 TGDFYEDAVRAILLKQP-----VKSLLRFKCVCKSWYALFEDSMFIREHL 49 (375)
Q Consensus 5 ~~~LP~Dll~eIL~rLP-----~ksl~r~r~VcK~W~~li~~p~F~~~~~ 49 (375)
...||||||.+||.+.= ..+|.++.+|||.|+-...+|.|-+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 46799999999998765 4899999999999999999999988743
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.50 E-value=0.0038 Score=56.54 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=39.3
Q ss_pred CCch----HHHHHHHHccCCccccceeeeccccchhhcCChHHHHHH
Q 048294 6 GDFY----EDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREH 48 (375)
Q Consensus 6 ~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~ 48 (375)
..|| +++.+.||+.|...+|..|..|||+|+++++++...++-
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 4689 999999999999999999999999999999999876653
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.23 E-value=1.3 Score=43.72 Aligned_cols=154 Identities=11% Similarity=-0.004 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeec--cCCceEEEEEECCCceeeeecC----CCCCCCc
Q 048294 183 QTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELR--SNGHKVVLSFDLGDEVYEEIQG----PCLPQSV 256 (375)
Q Consensus 183 ~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~~il~fDl~~e~~~~i~l----P~~~~~~ 256 (375)
.+.+++..+..|......-.......... .+.++..+|.+.... ......+.+||+.+.+|..+.. |.... .
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~-~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS-LSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA-G 166 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee-EEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc-c
Confidence 58888888888987653311001111122 678888888887432 1223589999999999988733 22221 1
Q ss_pred cceeEEecCeEEEEEecC--CCcEEEEEEEcC--ceeeEEEEECCCC-C-ccccEEEeecCcEEEEec------CCeEEE
Q 048294 257 YVVMGLYKECISLLVLKT--IEFCFEIWTMKD--KEWTKKLTVGPFE-G-MFHPLGFWKTGGFFAENQ------SNQMIL 324 (375)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~--~~~~~~iW~l~~--~~W~~~~~i~~~~-~-~~~~~~~~~~~~ll~~~~------~~~~~~ 324 (375)
.-+...+.+|.+..... .+..-++|+++- ..|.+..+.+... . ....+.+.++.-+++.-. -+.+..
T Consensus 167 -Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ 245 (482)
T KOG0379|consen 167 -HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHI 245 (482)
T ss_pred -ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEe
Confidence 22334566666665543 225689999987 7899998877432 2 233333343333332211 135889
Q ss_pred EeCCCCcEEEEEEec
Q 048294 325 YDPRTEEMKNFGLNS 339 (375)
Q Consensus 325 yd~~~~~~~~v~~~~ 339 (375)
+|+.+.+|+.+...+
T Consensus 246 ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 246 LDLSTWEWKLLPTGG 260 (482)
T ss_pred eecccceeeeccccC
Confidence 999998888665444
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=94.61 E-value=1.2 Score=44.10 Aligned_cols=204 Identities=11% Similarity=0.001 Sum_probs=111.7
Q ss_pred EEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeecc
Q 048294 120 LTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFES 199 (375)
Q Consensus 120 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~ 199 (375)
++++|-.++.|..........+. .....+...+ =+++.+...... ......+..|+..|+.|+....
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~--r~g~~~~~~~-------~~l~lfGG~~~~----~~~~~~l~~~d~~t~~W~~l~~ 156 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSP--RYGHSLSAVG-------DKLYLFGGTDKK----YRNLNELHSLDLSTRTWSLLSP 156 (482)
T ss_pred eEEeecCCcccccccccCCCCCc--ccceeEEEEC-------CeEEEEccccCC----CCChhheEeccCCCCcEEEecC
Confidence 99999999888876544332110 0111112221 133333222111 1124588999999999998874
Q ss_pred cCC-cccccCCCCcceEeCccEEEeeeeccC--CceEEEEEECCCceeeeecCCCCCCC--ccceeEEecCeEEEEEecC
Q 048294 200 FKS-SHYHMPWYHDCVNLDGGCYWLLELRSN--GHKVVLSFDLGDEVYEEIQGPCLPQS--VYVVMGLYKECISLLVLKT 274 (375)
Q Consensus 200 ~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~lP~~~~~--~~~~l~~~~g~L~l~~~~~ 274 (375)
.-. |.. ......+.++-.+|........ ..+.+.+||+++.+|..+......-. ....+...+++++++....
T Consensus 157 ~~~~P~~--r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 157 TGDPPPP--RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred cCCCCCC--cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccc
Confidence 421 111 1111145555566666532211 46789999999999998854332211 1234557789988887753
Q ss_pred --CCcEEEEEEEcC--ceeeEEEEEC-CCCC-ccccEEEeecCcEEEEec--------CCeEEEEeCCCCcEEEEEEec
Q 048294 275 --IEFCFEIWTMKD--KEWTKKLTVG-PFEG-MFHPLGFWKTGGFFAENQ--------SNQMILYDPRTEEMKNFGLNS 339 (375)
Q Consensus 275 --~~~~~~iW~l~~--~~W~~~~~i~-~~~~-~~~~~~~~~~~~ll~~~~--------~~~~~~yd~~~~~~~~v~~~~ 339 (375)
....=++|.|+- ..|.+..... .... ...... ..+..+++... -..++.||.+++.|..+...+
T Consensus 235 ~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 235 DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 234468999887 6777444332 1111 122222 22233333321 235788999999998886433
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.56 E-value=0.65 Score=43.67 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeecc-------CCceEEEEEECCCceeeeecCCCCCCC
Q 048294 183 QTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRS-------NGHKVVLSFDLGDEVYEEIQGPCLPQS 255 (375)
Q Consensus 183 ~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-------~~~~~il~fDl~~e~~~~i~lP~~~~~ 255 (375)
...+|+..+++|+.+..+-+|.+....+. .|+-.|.+|-...+.. ....-+..||+.+.+|..+.++.....
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~-va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQA-VAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCcccee-EEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 56789999999999886643332212222 3444464444332211 123358999999999999988876643
Q ss_pred cc-ceeEEecCeEEEEEecCCC--c---EEEEEEEcC--ceeeEEEE
Q 048294 256 VY-VVMGLYKECISLLVLKTIE--F---CFEIWTMKD--KEWTKKLT 294 (375)
Q Consensus 256 ~~-~~l~~~~g~L~l~~~~~~~--~---~~~iW~l~~--~~W~~~~~ 294 (375)
.. ..|...+.+|.+.....+. . .=+||+.+- ..|++...
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 32 5577889999888774311 1 136777664 89999875
No 35
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.62 E-value=12 Score=36.07 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=64.0
Q ss_pred eEeCccEEEeeeeccCCceEEEEEECCCce---eeeecCCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcCceee
Q 048294 214 VNLDGGCYWLLELRSNGHKVVLSFDLGDEV---YEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWT 290 (375)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fDl~~e~---~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~ 290 (375)
-+.++.+|.++. .......|++.|+.+-. |..+-+|.........+...++.|.+....+....+.++-++ ..|.
T Consensus 284 ~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~ 361 (414)
T PF02897_consen 284 DHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKE 361 (414)
T ss_dssp EEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEE
T ss_pred EccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcE
Confidence 345677777763 34456799999999875 453333332211112244568888777765444455555554 2444
Q ss_pred EEEEECCCCCccccEEEe---ecCcEEEEec----CCeEEEEeCCCCcEEEEE
Q 048294 291 KKLTVGPFEGMFHPLGFW---KTGGFFAENQ----SNQMILYDPRTEEMKNFG 336 (375)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~---~~~~ll~~~~----~~~~~~yd~~~~~~~~v~ 336 (375)
....-.+. ......+. +.+++++... ...++.||+++++.+.+.
T Consensus 362 ~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 362 SREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 44322222 12222222 2355655443 467999999999998764
No 36
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.60 E-value=8.6 Score=33.44 Aligned_cols=189 Identities=9% Similarity=0.002 Sum_probs=92.4
Q ss_pred ecceEEEeeCCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEE
Q 048294 107 YDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAV 186 (375)
Q Consensus 107 ~nGLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 186 (375)
-+|.+.....++.++.+|+.|++.++--..+.. . .. .... ..-+|++.. . .-.+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------~-~~-~~~~-----~~~~v~v~~---~--------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------I-SG-APVV-----DGGRVYVGT---S--------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC------G-GS-GEEE-----ETTEEEEEE---T--------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc------c-cc-eeee-----ccccccccc---c--------eeeeEe
Confidence 688888877777799999999987643333221 0 00 0011 112232222 1 116667
Q ss_pred EEcCCC--Ccee-ecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCcee--ee-ecCCCCCCCc----
Q 048294 187 YNLSTN--SWRY-FESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVY--EE-IQGPCLPQSV---- 256 (375)
Q Consensus 187 yss~~~--~Wr~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~--~~-i~lP~~~~~~---- 256 (375)
++..++ .|+. ....+ ......... ....++.+|... ....|.++|+.+.+- .. +..|......
T Consensus 91 ~d~~tG~~~W~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-----~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSP-PAGVRSSSS-PAVDGDRLYVGT-----SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp EETTTSCEEEEEEE-SSC-TCSTB--SE-EEEETTEEEEEE-----TCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred cccCCcceeeeecccccc-ccccccccC-ceEecCEEEEEe-----ccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 776666 6984 43322 111111112 333455666554 477999999987754 22 2333321110
Q ss_pred --cceeEEecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcE
Q 048294 257 --YVVMGLYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEM 332 (375)
Q Consensus 257 --~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~ 332 (375)
...+...+|.+.+... ....+.+ -++. ..|.+. +.. ... .....++.+++...+++++++|++|++.
T Consensus 164 ~~~~~~~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~--~~~---~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP--ISG---IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC--SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ccccceEEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec--CCC---ccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 0112223564444332 2223444 4443 246222 221 111 1122334445555589999999999987
Q ss_pred EEE
Q 048294 333 KNF 335 (375)
Q Consensus 333 ~~v 335 (375)
.+.
T Consensus 235 ~W~ 237 (238)
T PF13360_consen 235 VWQ 237 (238)
T ss_dssp EEE
T ss_pred EeE
Confidence 753
No 37
>PF13964 Kelch_6: Kelch motif
Probab=91.53 E-value=0.47 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=29.2
Q ss_pred ceEeCccEEEeeeecc--CCceEEEEEECCCceeeeec
Q 048294 213 CVNLDGGCYWLLELRS--NGHKVVLSFDLGDEVYEEIQ 248 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~--~~~~~il~fDl~~e~~~~i~ 248 (375)
.|.++|.+|.+..... .....+..||+++.+|+.++
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 7899999999985322 33568999999999999883
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.12 E-value=11 Score=33.88 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=119.0
Q ss_pred EeeeecceEEEeeC-CCeEEEEcccccceeccCCCCccCCCc-------ccccce-eeeEe-ecCCCCCeEEEEEEEEec
Q 048294 103 AGGPYDGIFCILGN-DNRLTLWNPANKEYRHVPKCRIIFPRY-------TTIFRT-NFGFG-RDPKNNKYKLVLIFTLWD 172 (375)
Q Consensus 103 ~~~s~nGLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~-------~~~~~~-~~~~g-~d~~~~~ykVv~~~~~~~ 172 (375)
+--+-+|-|-+... .+.+==.||.|++..+.|-.....|.+ ..+... -.+++ +|+.+.+++=+-+-.
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~--- 143 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL--- 143 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---
Confidence 44455887777663 444667899999999988776654421 111110 01221 344444333222211
Q ss_pred CCCCCCCCCceEEEEEcCCCCceeecccCC----c---------ccccCCCC-cceEeCccEEEeeeeccCCceEEEEEE
Q 048294 173 EKNSDLYDFSQTAVYNLSTNSWRYFESFKS----S---------HYHMPWYH-DCVNLDGGCYWLLELRSNGHKVVLSFD 238 (375)
Q Consensus 173 ~~~~~~~~~~~~~vyss~~~~Wr~~~~~~~----~---------~~~~~~~~-~~v~~~G~lywl~~~~~~~~~~il~fD 238 (375)
+....+++..||+-...-|-.-+.... + ...+.... =++.-||.+|+-. -..+.|...|
T Consensus 144 ---~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyas----lagnaiarid 216 (353)
T COG4257 144 ---EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYAS----LAGNAIARID 216 (353)
T ss_pred ---ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEe----ccccceEEcc
Confidence 123457888899999888865432110 0 01111112 0445579998875 3577999999
Q ss_pred CCCceeeeecCCCCCCCccce-eEEecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEE
Q 048294 239 LGDEVYEEIQGPCLPQSVYVV-MGLYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFA 315 (375)
Q Consensus 239 l~~e~~~~i~lP~~~~~~~~~-l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~ 315 (375)
..+..-..++.|+........ ...--|++..-.. ..=.+-+.+. .+|.. +.++-.+.-...+.+...|.+.+
T Consensus 217 p~~~~aev~p~P~~~~~gsRriwsdpig~~wittw----g~g~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 217 PFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW----GTGSLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred cccCCcceecCCCcccccccccccCccCcEEEecc----CCceeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEe
Confidence 999988889999874322211 1122233222211 1112222232 44543 33332221122234444566666
Q ss_pred E-ecCCeEEEEeCCCCcEEEEEEe
Q 048294 316 E-NQSNQMILYDPRTEEMKNFGLN 338 (375)
Q Consensus 316 ~-~~~~~~~~yd~~~~~~~~v~~~ 338 (375)
. ...+-+.-||+++.+++.+.++
T Consensus 292 sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 292 SEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eccccCceeecCcccceEEEecCC
Confidence 3 3367799999999999998764
No 39
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.53 E-value=9.2 Score=34.17 Aligned_cols=116 Identities=12% Similarity=0.216 Sum_probs=67.9
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCceee-eecCCCCCCCc--------cce--eEEecCeEEEEEecCC-CcEEE
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYE-EIQGPCLPQSV--------YVV--MGLYKECISLLVLKTI-EFCFE 280 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~-~i~lP~~~~~~--------~~~--l~~~~g~L~l~~~~~~-~~~~~ 280 (375)
.|..||.+|+.. .....|+.||+.+++.. ...||...... ... +.+-+.-|.++-...+ ...+-
T Consensus 74 ~vVYngslYY~~----~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~iv 149 (250)
T PF02191_consen 74 HVVYNGSLYYNK----YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIV 149 (250)
T ss_pred eEEECCcEEEEe----cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEE
Confidence 788999999988 46789999999999998 78898765331 111 2222333555544322 22455
Q ss_pred EEEEcC------ceeeEEEEECCCCCccccEEEeecCcEEEEec-----CCeEEEEeCCCCcEEEEEE
Q 048294 281 IWTMKD------KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ-----SNQMILYDPRTEEMKNFGL 337 (375)
Q Consensus 281 iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~yd~~~~~~~~v~~ 337 (375)
|=.|+. +.|...+ ..+.... ++--+|-+..... ..--++||..+++-+.+.+
T Consensus 150 vskld~~tL~v~~tw~T~~---~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 150 VSKLDPETLSVEQTWNTSY---PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEeeCcccCceEEEEEecc---Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 555554 4554322 1111111 2223455544432 1235789999988877664
No 40
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.22 E-value=12 Score=33.26 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=93.6
Q ss_pred CceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCC--ceeeeecCCCCCCCc-c
Q 048294 181 FSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGD--EVYEEIQGPCLPQSV-Y 257 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~--e~~~~i~lP~~~~~~-~ 257 (375)
.....+|+..++++|.+.... ..+ -... .+.-||.+--.... ..+...+-.|+..+ ........|...... +
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t--d~F-CSgg-~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT--DTF-CSGG-AFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC--CCc-ccCc-CCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 345778999999998877442 111 1122 56667776644421 12344566777765 122233333332221 1
Q ss_pred --ceeEEecCeEEEEEecCCCcEEEEEEEcC-----ceeeEEEEEC--CCCCccccEEEeecCcEEEEecCCeEEEEeCC
Q 048294 258 --VVMGLYKECISLLVLKTIEFCFEIWTMKD-----KEWTKKLTVG--PFEGMFHPLGFWKTGGFFAENQSNQMILYDPR 328 (375)
Q Consensus 258 --~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-----~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~ 328 (375)
.....-+|++.++.... ....|.|=-+. ..|....... ....++..+.+.++|+||+... .+-..||.+
T Consensus 120 YpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RGSIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CCcEEEeCC
Confidence 11223489988887753 44455553322 1221111111 1123566677789999977654 456788999
Q ss_pred CCcE-EEEE-EeccceEEEEeecCcccCCC
Q 048294 329 TEEM-KNFG-LNSLHFQVFNYTETLIPIKG 356 (375)
Q Consensus 329 ~~~~-~~v~-~~~~~~~~~~y~~SLv~l~~ 356 (375)
++++ +++. +++. .+..+...|-+.||-
T Consensus 198 ~n~v~~~lP~lPg~-~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 198 TNTVVRTLPDLPGG-PRNYPASGSSVMLPL 226 (243)
T ss_pred CCeEEeeCCCCCCC-ceecCCCcceEEecC
Confidence 9976 5664 5553 567788888887776
No 41
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=89.69 E-value=7 Score=34.20 Aligned_cols=117 Identities=12% Similarity=0.138 Sum_probs=67.1
Q ss_pred EeCccEEEeeeeccCCceEEEEEECCCceeeeecCCCCCC--Ccc--ceeE--EecC--eEEEEEec---CCCcEEEEEE
Q 048294 215 NLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQ--SVY--VVMG--LYKE--CISLLVLK---TIEFCFEIWT 283 (375)
Q Consensus 215 ~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~~~~--~~~--~~l~--~~~g--~L~l~~~~---~~~~~~~iW~ 283 (375)
.|||-+ ++.. ...+...|+.++++..++.|.... ... ..++ ...+ |+..+... .....++|..
T Consensus 3 sCnGLl-c~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLI-CFSY-----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEE-EEec-----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 578888 5551 267999999999999997665421 111 0122 1111 22222111 1235678888
Q ss_pred EcCceeeEEEEECCCCCccccEEEeecCcEEEEec-C-----CeEEEEeCCCCcEEE-EEEe
Q 048294 284 MKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ-S-----NQMILYDPRTEEMKN-FGLN 338 (375)
Q Consensus 284 l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-~-----~~~~~yd~~~~~~~~-v~~~ 338 (375)
++..+|.......+....... ++.-+|.+.+... . ..+++||++++++++ +..+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred eCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 887889887632211111222 4555677744332 1 169999999999995 6653
No 42
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.35 E-value=15 Score=32.47 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=106.2
Q ss_pred eeecceEEEee-CCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCce
Q 048294 105 GPYDGIFCILG-NDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQ 183 (375)
Q Consensus 105 ~s~nGLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 183 (375)
+..+|-|.+.+ ..++++.++|.+++...+..+.. .|+.++...+.+ +. .. ...
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~------------~G~~~~~~~g~l--~v-~~-----------~~~ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGP------------NGMAFDRPDGRL--YV-AD-----------SGG 61 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSE------------EEEEEECTTSEE--EE-EE-----------TTC
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCC------------ceEEEEccCCEE--EE-EE-----------cCc
Confidence 33356666665 45679999999998765443321 555655322222 22 11 224
Q ss_pred EEEEEcCCCCceeecccCCcc-cc-cCCCCcceEeCccEEEeeeecc--CCc--eEEEEEECCCceeeee----cCCCCC
Q 048294 184 TAVYNLSTNSWRYFESFKSSH-YH-MPWYHDCVNLDGGCYWLLELRS--NGH--KVVLSFDLGDEVYEEI----QGPCLP 253 (375)
Q Consensus 184 ~~vyss~~~~Wr~~~~~~~~~-~~-~~~~~~~v~~~G~lywl~~~~~--~~~--~~il~fDl~~e~~~~i----~lP~~~ 253 (375)
..+++..++.++.+...+... .. ....- .+--+|.+|.-..... ... ..|..+|.. .+...+ ..|...
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI 139 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce
Confidence 566788888888766442111 11 01111 4555788776653211 112 789999999 544433 222221
Q ss_pred CCccceeEEecCeEEEEEecCCCcEEEEEEEcC----ceeeEEEEE-CCCCC--ccccEEEeecCcEEEEe-cCCeEEEE
Q 048294 254 QSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD----KEWTKKLTV-GPFEG--MFHPLGFWKTGGFFAEN-QSNQMILY 325 (375)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~----~~W~~~~~i-~~~~~--~~~~~~~~~~~~ll~~~-~~~~~~~y 325 (375)
. ..-+|+..++... .... ||.++- ..+.....+ ..... ...-+++..+|.|++.. ..+++..|
T Consensus 140 ~------~s~dg~~lyv~ds-~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 140 A------FSPDGKTLYVADS-FNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp E------EETTSSEEEEEET-TTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred E------ECCcchheeeccc-ccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 1 1335654444332 2333 555543 335554433 22222 23446667778887765 47899999
Q ss_pred eCCCCcEEEEEEecc
Q 048294 326 DPRTEEMKNFGLNSL 340 (375)
Q Consensus 326 d~~~~~~~~v~~~~~ 340 (375)
|++.+.++.+.++..
T Consensus 211 ~p~G~~~~~i~~p~~ 225 (246)
T PF08450_consen 211 DPDGKLLREIELPVP 225 (246)
T ss_dssp ETTSCEEEEEE-SSS
T ss_pred CCCccEEEEEcCCCC
Confidence 999887888887633
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.18 E-value=0.15 Score=48.06 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHccCCccccceeeeccccchhhcCCh
Q 048294 6 GDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDS 42 (375)
Q Consensus 6 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p 42 (375)
-.||.+++..||+-|..|++.|++.+||.|+-+..|.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3699999999999999999999999999999988764
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=87.05 E-value=2 Score=26.94 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=29.3
Q ss_pred ceEeCccEEEeeeec--cCCceEEEEEECCCceeeee
Q 048294 213 CVNLDGGCYWLLELR--SNGHKVVLSFDLGDEVYEEI 247 (375)
Q Consensus 213 ~v~~~G~lywl~~~~--~~~~~~il~fDl~~e~~~~i 247 (375)
++.++|.+|-+.... ......+..||+.+.+|..+
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 789999999999542 34567899999999999987
No 45
>smart00284 OLF Olfactomedin-like domains.
Probab=85.36 E-value=24 Score=31.60 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCceeee-ecCCCCC-CC-------ccce--eEEecCeEEEEEecC-CCcEEE
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEE-IQGPCLP-QS-------VYVV--MGLYKECISLLVLKT-IEFCFE 280 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~-i~lP~~~-~~-------~~~~--l~~~~g~L~l~~~~~-~~~~~~ 280 (375)
.|+.||++|+.. .....|+.||+.+++... -.+|... .. +... +.+-+.-|.++-... ....|.
T Consensus 79 ~VVYngslYY~~----~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 79 VVVYNGSLYFNK----FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred EEEECceEEEEe----cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 799999999976 356789999999999864 4577532 11 1111 223334455554432 335566
Q ss_pred EEEEcC------ceeeEEEEECCCCCccccEEEeecCcEEEEec-----CCeEEEEeCCCCcEEEEEE
Q 048294 281 IWTMKD------KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ-----SNQMILYDPRTEEMKNFGL 337 (375)
Q Consensus 281 iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~yd~~~~~~~~v~~ 337 (375)
|=.|+. +.|...+. .+... -++--+|-+..... ..-.++||..|++-+.+.+
T Consensus 155 vSkLnp~tL~ve~tW~T~~~---k~sa~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 155 ISKLNPATLTIENTWITTYN---KRSAS--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred EEeeCcccceEEEEEEcCCC---ccccc--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 666665 45554221 11111 12223455544432 2346789999887666554
No 46
>PF13964 Kelch_6: Kelch motif
Probab=84.85 E-value=2.4 Score=27.06 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=18.6
Q ss_pred CeEEEEcccccceeccCCCCc
Q 048294 118 NRLTLWNPANKEYRHVPKCRI 138 (375)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~ 138 (375)
+.+.++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 459999999999999998865
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=84.66 E-value=21 Score=33.53 Aligned_cols=134 Identities=13% Similarity=0.012 Sum_probs=70.7
Q ss_pred EeeeecceEEEeeCCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCc
Q 048294 103 AGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFS 182 (375)
Q Consensus 103 ~~~s~nGLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 182 (375)
+.+-.+.-|+..+.....+|+++.|+....+|.+.... .....+..| =++.++...............
T Consensus 71 F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk-----~~pisv~VG-------~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 71 FFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPK-----RCPISVSVG-------DKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred EEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCC-----cceEEEEeC-------CeEEEeeccCccccccCccce
Confidence 33333445555544455899999999999999865421 111112221 124444333221100000001
Q ss_pred eEEEE--E--------cCCCCceeecccCCccccc------CCCCcceEeCccEEEeeeeccCCceEEEEEECCCceeee
Q 048294 183 QTAVY--N--------LSTNSWRYFESFKSSHYHM------PWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEE 246 (375)
Q Consensus 183 ~~~vy--s--------s~~~~Wr~~~~~~~~~~~~------~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~ 246 (375)
.+|++ + ..+.+|+.++.+| ..... ..+. +|+ +|.-=|+... .....-.+||.++.+|+.
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PP-f~~~~~~~~~~i~sY-avv-~g~~I~vS~~--~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPPP-FVRDRRYSDYRITSY-AVV-DGRTIFVSVN--GRRWGTYSFDTESHEWRK 213 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCCC-ccccCCcccceEEEE-EEe-cCCeEEEEec--CCceEEEEEEcCCcceee
Confidence 44444 3 2224677766533 22111 2223 666 8988888621 111368999999999987
Q ss_pred e---cCCCCC
Q 048294 247 I---QGPCLP 253 (375)
Q Consensus 247 i---~lP~~~ 253 (375)
. .||...
T Consensus 214 ~GdW~LPF~G 223 (342)
T PF07893_consen 214 HGDWMLPFHG 223 (342)
T ss_pred ccceecCcCC
Confidence 6 788754
No 48
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.79 E-value=15 Score=33.02 Aligned_cols=123 Identities=17% Similarity=0.142 Sum_probs=75.6
Q ss_pred EeeeecceEEEee-CCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCC
Q 048294 103 AGGPYDGIFCILG-NDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDF 181 (375)
Q Consensus 103 ~~~s~nGLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 181 (375)
+++.-+|-|-+.. ..+.+...||.++.--++|.+..... .. -....|+.. -+++.... .
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~----gs---Rriwsdpig----~~wittwg---------~ 253 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA----GS---RRIWSDPIG----RAWITTWG---------T 253 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc----cc---cccccCccC----cEEEeccC---------C
Confidence 5556677666654 22348889999998778887765211 00 222333322 12333221 3
Q ss_pred ceEEEEEcCCCCceeecccCC-cccccCCCCcceEeCc-cEEEeeeeccCCceEEEEEECCCceeeeecCCCCCC
Q 048294 182 SQTAVYNLSTNSWRYFESFKS-SHYHMPWYHDCVNLDG-GCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQ 254 (375)
Q Consensus 182 ~~~~vyss~~~~Wr~~~~~~~-~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~~~~ 254 (375)
-.+.-|+..+.+|++...+-. ++ .. .+++|. -.-|+. ....+.|..||.++++|+.+++|....
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~ar-----py-s~rVD~~grVW~s---ea~agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSKAR-----PY-SMRVDRHGRVWLS---EADAGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred ceeeEeCcccccceeeeCCCCCCC-----cc-eeeeccCCcEEee---ccccCceeecCcccceEEEecCCCCCC
Confidence 478889999999998774421 11 11 444442 234665 246789999999999999999987764
No 49
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=81.89 E-value=12 Score=29.59 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=48.5
Q ss_pred eEEEEEECCCc--eeeeecCCCCCCCc------------cceeEEecCeEEEEEecC--------CCcEEEEEEEcC---
Q 048294 232 KVVLSFDLGDE--VYEEIQGPCLPQSV------------YVVMGLYKECISLLVLKT--------IEFCFEIWTMKD--- 286 (375)
Q Consensus 232 ~~il~fDl~~e--~~~~i~lP~~~~~~------------~~~l~~~~g~L~l~~~~~--------~~~~~~iW~l~~--- 286 (375)
..|+..|+-++ .++.|+||...... ++.++..+|+|-++.... ....+.+|.|+.
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 35778888765 67888998765211 134667899998887742 355799999987
Q ss_pred --ceeeEEEEECC
Q 048294 287 --KEWTKKLTVGP 297 (375)
Q Consensus 287 --~~W~~~~~i~~ 297 (375)
..|.+.+++..
T Consensus 86 ~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 86 SSWEWKKDCEVDL 98 (131)
T ss_pred CCCCEEEeEEEEh
Confidence 68999998874
No 50
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=81.62 E-value=4.1 Score=25.91 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred ceEeCccEEEeeee----ccCCceEEEEEECCCceeeeecC
Q 048294 213 CVNLDGGCYWLLEL----RSNGHKVVLSFDLGDEVYEEIQG 249 (375)
Q Consensus 213 ~v~~~G~lywl~~~----~~~~~~~il~fDl~~e~~~~i~l 249 (375)
++.++|.+|-.... .......+-.||+++.+|+.++.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 78899999998844 12345679999999999998754
No 51
>smart00612 Kelch Kelch domain.
Probab=81.19 E-value=2.6 Score=26.01 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.4
Q ss_pred CceEEEEEcCCCCceeecccC
Q 048294 181 FSQTAVYNLSTNSWRYFESFK 201 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~ 201 (375)
...+++|+.++++|+.....+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 457899999999999887554
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=79.18 E-value=0.48 Score=47.26 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHccCCccccceeeeccccchhhcCChHHHHH
Q 048294 5 TGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIRE 47 (375)
Q Consensus 5 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~ 47 (375)
...||.++...||..|+.++++++++||+.|+.++.+......
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 3469999999999999999999999999999999988776654
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=78.45 E-value=59 Score=30.43 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=70.9
Q ss_pred CccEEEeeeeccCCceEEEEEECCCce--ee---eecCCCCCCCccceeE-EecCeEEEEEecCCCcEEEEEEEcC--ce
Q 048294 217 DGGCYWLLELRSNGHKVVLSFDLGDEV--YE---EIQGPCLPQSVYVVMG-LYKECISLLVLKTIEFCFEIWTMKD--KE 288 (375)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fDl~~e~--~~---~i~lP~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~--~~ 288 (375)
+|..-|... .+.+.|..|++..+. +. .+.+|......+ +. .-+|+..++... ....+.+..++. ..
T Consensus 154 dg~~v~v~d---lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh--~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 154 DGRFVYVPD---LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH--LAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGS 227 (345)
T ss_dssp TSSEEEEEE---TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE--EEE-TTSSEEEEEET-TTTEEEEEEEETTTTE
T ss_pred CCCEEEEEe---cCCCEEEEEEEeCCCceEEEeeccccccCCCCcE--EEEcCCcCEEEEecC-CCCcEEEEeecccCCc
Confidence 466666652 456678888887665 43 356666654322 22 336666555543 567899999884 77
Q ss_pred eeEEEEECCCC-C-----ccccEEEeecCcEEEEec--CCeEEEEeC--CCCcEEEEE
Q 048294 289 WTKKLTVGPFE-G-----MFHPLGFWKTGGFFAENQ--SNQMILYDP--RTEEMKNFG 336 (375)
Q Consensus 289 W~~~~~i~~~~-~-----~~~~~~~~~~~~ll~~~~--~~~~~~yd~--~~~~~~~v~ 336 (375)
+....++.... . ...-+.+.++|+.++... .+.+..|++ ++++++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 77777776431 1 234466778898876644 567888887 567888776
No 54
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.47 E-value=67 Score=30.05 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=79.1
Q ss_pred CceEEEEEcCCCC--ceeecccCCcccccCCCCcceEeCcc-EEEeeeeccCCceEEEEEECC--Cceeeee----cCCC
Q 048294 181 FSQTAVYNLSTNS--WRYFESFKSSHYHMPWYHDCVNLDGG-CYWLLELRSNGHKVVLSFDLG--DEVYEEI----QGPC 251 (375)
Q Consensus 181 ~~~~~vyss~~~~--Wr~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fDl~--~e~~~~i----~lP~ 251 (375)
...+.+|+.+.+. .........+...++..- ...-+|. +|... .....|.+|++. +.++..+ .+|.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~-~f~pdg~~~Yv~~----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL-AFSPDGKYAYVVN----ELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE-EE-TTSSEEEEEE----TTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEE-EEcCCcCEEEEec----CCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 3478888888765 443221110110001000 2222554 55544 345566666666 6666554 3454
Q ss_pred CCCCc-c-ceeE-EecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEec--CCeEEE
Q 048294 252 LPQSV-Y-VVMG-LYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ--SNQMIL 324 (375)
Q Consensus 252 ~~~~~-~-~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~ 324 (375)
..... . .-+. .-+|+..++..+ ....+.++.++. +.-++...+...-...+-+.+.++|+.++... ++.+..
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 33221 1 1222 346776555554 577899999965 44444444443223356677788898766543 567777
Q ss_pred E--eCCCCcEEEEE
Q 048294 325 Y--DPRTEEMKNFG 336 (375)
Q Consensus 325 y--d~~~~~~~~v~ 336 (375)
| |.+++.++.+.
T Consensus 319 f~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 319 FDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEeCCCCcEEEec
Confidence 7 56788888775
No 55
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=76.20 E-value=5.3 Score=24.89 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred EEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeeccc
Q 048294 163 KLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESF 200 (375)
Q Consensus 163 kVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~ 200 (375)
+|..+...... ......+++|+..+++|+..+..
T Consensus 13 ~iyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 13 KIYVIGGYDGN----NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEEEBEST----SSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeeeccc----CceeeeEEEEeCCCCEEEEcCCC
Confidence 55555544431 23467899999999999988754
No 56
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.50 E-value=11 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.3
Q ss_pred ecCcEEEEecCCeEEEEeCCCCcEEE
Q 048294 309 KTGGFFAENQSNQMILYDPRTEEMKN 334 (375)
Q Consensus 309 ~~~~ll~~~~~~~~~~yd~~~~~~~~ 334 (375)
.+|.+++...++.++++|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35566777678999999999988765
No 57
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=70.79 E-value=39 Score=33.20 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=81.5
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCC--Ccee
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTN--SWRY 196 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~--~Wr~ 196 (375)
.+.|+|-+|+||. +|.....-|. ...+ +||.+|. =|++++...-. ...+.-+.|.+... .|++
T Consensus 58 ELHvYNTatnqWf-~PavrGDiPp---gcAA-~GfvcdG----trilvFGGMvE------YGkYsNdLYELQasRWeWkr 122 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGDIPP---GCAA-FGFVCDG----TRILVFGGMVE------YGKYSNDLYELQASRWEWKR 122 (830)
T ss_pred hhhhhccccceee-cchhcCCCCC---chhh-cceEecC----ceEEEEccEee------eccccchHHHhhhhhhhHhh
Confidence 5899999999997 5554443331 2234 7777664 46666643211 12445567777775 5677
Q ss_pred ecccCCcc---cccCCCCcceEeCccEEEeeee--c----------cCCceEEEEEECCCce--eeee----cCCCCCCC
Q 048294 197 FESFKSSH---YHMPWYHDCVNLDGGCYWLLEL--R----------SNGHKVVLSFDLGDEV--YEEI----QGPCLPQS 255 (375)
Q Consensus 197 ~~~~~~~~---~~~~~~~~~v~~~G~lywl~~~--~----------~~~~~~il~fDl~~e~--~~~i----~lP~~~~~ 255 (375)
+....+.. .+..-...-+.+....|.+..- + +-...+++-+..++.. |... .+|.....
T Consensus 123 lkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES 202 (830)
T KOG4152|consen 123 LKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES 202 (830)
T ss_pred cCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc
Confidence 65443221 1111111134555677766621 0 1234455555555553 3321 34444433
Q ss_pred ccceeE-Ee---cCeEEEEEecCCCcEEEEEEEcC--ceeeEEE
Q 048294 256 VYVVMG-LY---KECISLLVLKTIEFCFEIWTMKD--KEWTKKL 293 (375)
Q Consensus 256 ~~~~l~-~~---~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~ 293 (375)
.-..+- +. .-++.+........-=++|.|+- -.|.+-.
T Consensus 203 HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 203 HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred ceeEEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 222221 22 22344444432333458999997 7898854
No 58
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=67.45 E-value=17 Score=27.99 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=29.4
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEE
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFT 169 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~ 169 (375)
.+.+.||.|+.|. |..... ..... +.+.+++..+.|+|+....
T Consensus 10 ~Vm~~d~~tk~W~--P~~~~~-----~~ls~-V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 10 SVMVYDDSNKKWV--PAGGGS-----QGFSR-VQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EeeEEcCCCCcEE--cCCCCC-----CCcce-EEEEEcCCCCEEEEEEeec
Confidence 3788999999854 543310 12233 7788889899999987653
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=65.57 E-value=1.4e+02 Score=29.06 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=60.4
Q ss_pred CCceEEEEEECCCceeeeecCCCCCCCcc--ceeEEecCeEEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCccccEE
Q 048294 229 NGHKVVLSFDLGDEVYEEIQGPCLPQSVY--VVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLG 306 (375)
Q Consensus 229 ~~~~~il~fDl~~e~~~~i~lP~~~~~~~--~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~ 306 (375)
+...++.+||+++.++..+..|.+..... .+-+.-++...++.+ ....|.|--++...|..-..|. +.-.-++
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--~~G~I~lLhakT~eli~s~Kie---G~v~~~~ 351 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--NNGHIHLLHAKTKELITSFKIE---GVVSDFT 351 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc--cCceEEeehhhhhhhhheeeec---cEEeeEE
Confidence 45779999999999999998887764211 221112333222222 2333444444435555555554 2234455
Q ss_pred EeecCcEEEE-ecCCeEEEEeCCCCcEEEEE
Q 048294 307 FWKTGGFFAE-NQSNQMILYDPRTEEMKNFG 336 (375)
Q Consensus 307 ~~~~~~ll~~-~~~~~~~~yd~~~~~~~~v~ 336 (375)
+..+++.++. ...+.++.+|++++......
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 5566766554 45789999999998666544
No 60
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.86 E-value=15 Score=21.95 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=19.1
Q ss_pred cEEEEecCCeEEEEeCCCCcEEEE
Q 048294 312 GFFAENQSNQMILYDPRTEEMKNF 335 (375)
Q Consensus 312 ~ll~~~~~~~~~~yd~~~~~~~~v 335 (375)
.+++...++.++++|.+|++..+-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 455565688999999999998864
No 61
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=62.37 E-value=1.1e+02 Score=26.81 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=66.0
Q ss_pred ceEe--CccEEEeeeeccCCceEEEEEECCCceeeeecCCCCCCCccceeEE-ecCeEEEEEecCCCcEEEEEEEcCcee
Q 048294 213 CVNL--DGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGL-YKECISLLVLKTIEFCFEIWTMKDKEW 289 (375)
Q Consensus 213 ~v~~--~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W 289 (375)
+++. +|.+||.. .....|..+|+.+.+...+.+|.... .... -+|+|.+... ..+.+.-++..++
T Consensus 5 p~~d~~~g~l~~~D----~~~~~i~~~~~~~~~~~~~~~~~~~G----~~~~~~~g~l~v~~~----~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVD----IPGGRIYRVDPDTGEVEVIDLPGPNG----MAFDRPDGRLYVADS----GGIAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEE----TTTTEEEEEETTTTEEEEEESSSEEE----EEEECTTSEEEEEET----TCEEEEETTTTEE
T ss_pred eEEECCCCEEEEEE----cCCCEEEEEECCCCeEEEEecCCCce----EEEEccCCEEEEEEc----CceEEEecCCCcE
Confidence 4555 69999997 45679999999999998888877221 1112 3566654432 2233332222677
Q ss_pred eEEEEECCCC-Ccccc--EEEeecCcEEEEecC---------CeEEEEeCCCCcEEEE
Q 048294 290 TKKLTVGPFE-GMFHP--LGFWKTGGFFAENQS---------NQMILYDPRTEEMKNF 335 (375)
Q Consensus 290 ~~~~~i~~~~-~~~~~--~~~~~~~~ll~~~~~---------~~~~~yd~~~~~~~~v 335 (375)
.......... ...+| +++.++|.+++.... ++++.++++ ++.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 7777663221 23333 455677887776431 468889988 665554
No 62
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=61.41 E-value=74 Score=33.06 Aligned_cols=101 Identities=18% Similarity=0.336 Sum_probs=61.2
Q ss_pred eEEEEEECCCceeee---ecCCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC--------ceeeEEEEECCCCC
Q 048294 232 KVVLSFDLGDEVYEE---IQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD--------KEWTKKLTVGPFEG 300 (375)
Q Consensus 232 ~~il~fDl~~e~~~~---i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--------~~W~~~~~i~~~~~ 300 (375)
.....||.....|.. |..|.............-.+-.++... .+..+.||++.+ ..|..+. |.....
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k 509 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-VDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHK 509 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-cCCeEEEEEEecccccCcCccceEEee-eecccc
Confidence 356777878878854 567776543222111111111223332 577899999955 6798875 332221
Q ss_pred c-cccEEEeecCcEEEEecCCeEEEEeCCC-CcEEE
Q 048294 301 M-FHPLGFWKTGGFFAENQSNQMILYDPRT-EEMKN 334 (375)
Q Consensus 301 ~-~~~~~~~~~~~ll~~~~~~~~~~yd~~~-~~~~~ 334 (375)
. ....++.++|.++....++.+..||..+ ++++.
T Consensus 510 ~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 510 TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhc
Confidence 1 2334566789998888899999999998 44443
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=60.97 E-value=1.1e+02 Score=26.33 Aligned_cols=135 Identities=14% Similarity=0.132 Sum_probs=74.0
Q ss_pred eEEEEEcCCC--CceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCceee-eecCCCCCCCccce
Q 048294 183 QTAVYNLSTN--SWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYE-EIQGPCLPQSVYVV 259 (375)
Q Consensus 183 ~~~vyss~~~--~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~-~i~lP~~~~~~~~~ 259 (375)
.+..++..++ .|+..-... ... .... .+.-+|.+|-.. ....|.++|..+.+-. ...+|......
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~--~~~-~~~~-~~~~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~~~~~~~~--- 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPG--IGG-PVAT-AVPDGGRVYVAS-----GDGNLYALDAKTGKVLWRFDLPGPISGA--- 71 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSS--CSS-EEET-EEEETTEEEEEE-----TTSEEEEEETTTSEEEEEEECSSCGGSG---
T ss_pred EEEEEECCCCCEEEEEECCCC--CCC-ccce-EEEeCCEEEEEc-----CCCEEEEEECCCCCEEEEeeccccccce---
Confidence 5567787776 588743111 000 0011 345788888764 5779999998766542 33444443221
Q ss_pred eEEecCeEEEEEecCCCcEEEEEEEc--C--ceeeEEEEECCCCCccc-cEEEeecCcEEEEecCCeEEEEeCCCCcEEE
Q 048294 260 MGLYKECISLLVLKTIEFCFEIWTMK--D--KEWTKKLTVGPFEGMFH-PLGFWKTGGFFAENQSNQMILYDPRTEEMKN 334 (375)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~~~iW~l~--~--~~W~~~~~i~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~ 334 (375)
....++.+.+... +. .|+.++ + ..|.......+...... ......++.+++....+.++.+|+++++..+
T Consensus 72 ~~~~~~~v~v~~~---~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 72 PVVDGGRVYVGTS---DG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEETTEEEEEET---TS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred eeecccccccccc---ee--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 1345777765552 22 555555 3 67884332222111222 2222234445556558999999999988764
No 64
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=60.69 E-value=7 Score=24.66 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=14.0
Q ss_pred eEEEEcccccceeccCCCC
Q 048294 119 RLTLWNPANKEYRHVPKCR 137 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~ 137 (375)
.++++|+.|++|.++|++|
T Consensus 30 d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 30 DLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEETTTTEEEE--SS-
T ss_pred CEEEEECCCCEEEECCCCC
Confidence 4899999999999997765
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.35 E-value=1.9e+02 Score=28.24 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCcee-eee---cCCCCCCCc
Q 048294 181 FSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVY-EEI---QGPCLPQSV 256 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~-~~i---~lP~~~~~~ 256 (375)
...+.+|++.+.+=+..-..+-.. ..+. ....||.+.-.. +..+.+-.||+.+... +.+ +.|....
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~---v~s~-~fR~DG~LlaaG----D~sG~V~vfD~k~r~iLR~~~ah~apv~~~-- 116 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDV---VYSV-DFRSDGRLLAAG----DESGHVKVFDMKSRVILRQLYAHQAPVHVT-- 116 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccc---eeEE-EeecCCeEEEcc----CCcCcEEEeccccHHHHHHHhhccCceeEE--
Confidence 458899999986544321111000 1111 445569988776 4677899999555321 222 2232221
Q ss_pred cceeEEecCeEEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCccccEEEee-cCcEEEEe-cCCeEEEEeCCCCcEEE
Q 048294 257 YVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWK-TGGFFAEN-QSNQMILYDPRTEEMKN 334 (375)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~ll~~~-~~~~~~~yd~~~~~~~~ 334 (375)
.....++.+.+.+. .+....+|.+.... + ...+.--..+-+-..+.+ ++.+++.- .++.+-.||.++.+-+-
T Consensus 117 --~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 117 --KFSPQDNTMLVSGS--DDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred --EecccCCeEEEecC--CCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 11233555444443 57889999999722 2 333443223334444443 34565543 37889999998887233
Q ss_pred EEEe-ccceEEEEeecC
Q 048294 335 FGLN-SLHFQVFNYTET 350 (375)
Q Consensus 335 v~~~-~~~~~~~~y~~S 350 (375)
+.+. |...+...|.||
T Consensus 191 ~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPS 207 (487)
T ss_pred EEecCCCceeeEEEcCC
Confidence 3343 223444555554
No 66
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=57.70 E-value=38 Score=26.53 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCcEEEEEEe--cc----ceEEEEeecCcccCCCCCCC
Q 048294 319 SNQMILYDPRTEEMKNFGLN--SL----HFQVFNYTETLIPIKGDDSL 360 (375)
Q Consensus 319 ~~~~~~yd~~~~~~~~v~~~--~~----~~~~~~y~~SLv~l~~~~~~ 360 (375)
...+++||+++++++.+..+ .. ....+.|..+|..+......
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~ 66 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG 66 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC
Confidence 46799999999999999885 21 34667888888776655433
No 67
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=56.86 E-value=2e+02 Score=30.42 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=23.1
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCc--eeee
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDE--VYEE 246 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e--~~~~ 246 (375)
++.++|.+|.-+ ....++++|..+. .|+.
T Consensus 190 Plvvgg~lYv~t-----~~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 190 PLKVGDTLYLCT-----PHNKVIALDAATGKEKWKF 220 (764)
T ss_pred CEEECCEEEEEC-----CCCeEEEEECCCCcEEEEE
Confidence 899999999876 4568999998865 4553
No 68
>PLN02772 guanylate kinase
Probab=51.65 E-value=83 Score=30.18 Aligned_cols=73 Identities=15% Similarity=0.022 Sum_probs=48.2
Q ss_pred ceEeCccEEEeeeeccC--CceEEEEEECCCceeeeec---CCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC
Q 048294 213 CVNLDGGCYWLLELRSN--GHKVVLSFDLGDEVYEEIQ---GPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD 286 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~---lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~ 286 (375)
+|.++..+|....+... ....+.+||..+.+|..-. .|+....++.....-+++|-++... ....=+||.|+-
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~-~~~~~~~w~l~~ 107 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG-SAPDDSIWFLEV 107 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC-CCCccceEEEEc
Confidence 89999999988843222 3568999999999997642 2233333443333447777766543 344578999885
No 69
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=51.07 E-value=2.6e+02 Score=27.68 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=40.3
Q ss_pred CCcEEEEEEEcC-ceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcEEEEEEeccceEEEEe
Q 048294 275 IEFCFEIWTMKD-KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNY 347 (375)
Q Consensus 275 ~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~v~~~~~~~~~~~y 347 (375)
.+..+.||. +. -.|+++..-+ ..-.++++.|-+.+-...++.++.|.+++.+-.+..+++..++..|
T Consensus 388 qdk~v~lW~-~~k~~wt~~~~d~-----~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y 455 (626)
T KOG2106|consen 388 QDKHVRLWN-DHKLEWTKIIEDP-----AECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY 455 (626)
T ss_pred CcceEEEcc-CCceeEEEEecCc-----eeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEE
Confidence 456788888 44 7888876322 1333455566444555577788888888776666655444444444
No 70
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=50.90 E-value=2.2e+02 Score=26.82 Aligned_cols=138 Identities=9% Similarity=0.045 Sum_probs=72.3
Q ss_pred ceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCce--eeeecCCCCCCCccce
Q 048294 182 SQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEV--YEEIQGPCLPQSVYVV 259 (375)
Q Consensus 182 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~i~lP~~~~~~~~~ 259 (375)
........++..|...........+.. .. ++..+|.+|... ....|.+||.++.+ |+.-..+.........
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~~~~~-~~-~~~~dg~v~~~~-----~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~ 107 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGGIYAG-PA-PADGDGTVYVGT-----RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPI 107 (370)
T ss_pred eEEEcccCcceeeeeecccCccceEec-cc-cEeeCCeEEEec-----CCCcEEEEeCCCCcEEecccCcCcceeccCce
Confidence 345555666677865421111111211 11 389999999986 34489999999876 5433332000001111
Q ss_pred eEEecCeEEEEEecCCCcEEEEEEEcC----ceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcEEEE
Q 048294 260 MGLYKECISLLVLKTIEFCFEIWTMKD----KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNF 335 (375)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~~~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~v 335 (375)
+ .-+|++.+-... . .++.++. ..|.....- . ..+..+ .+..++.+++...++.+++.|.++++.++.
T Consensus 108 ~-~~~G~i~~g~~~--g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 108 L-GSDGKIYVGSWD--G---KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred E-EeCCeEEEeccc--c---eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 1 226664443322 1 6666665 456554432 0 001111 123445555554678999999998887654
No 71
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=50.42 E-value=40 Score=25.73 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=28.6
Q ss_pred eEEEEccccc-ceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEE
Q 048294 119 RLTLWNPANK-EYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIF 168 (375)
Q Consensus 119 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (375)
.+++++|.|+ .|. |..+. ... +.+-+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~Wv--Ps~~~--------~~~-V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWI--PASKH--------AVT-VSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeE--eCCCC--------cee-EEEEecCCCcEEEEEEec
Confidence 4899999986 665 33322 123 888899999999999864
No 72
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.29 E-value=29 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=18.2
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCC
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGD 241 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~ 241 (375)
++..+|.+|.-. ....+.+||.++
T Consensus 17 ~~v~~g~vyv~~-----~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGT-----GDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE------TTSEEEEEETT-
T ss_pred CEEECCEEEEEc-----CCCEEEEEeCCC
Confidence 788899999877 577999999864
No 73
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=49.54 E-value=2.3e+02 Score=26.61 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCc
Q 048294 183 QTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDE 242 (375)
Q Consensus 183 ~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e 242 (375)
....|+-.+.+|+..+.-.-| ...+ +.++..-=-|+..........|-+.|+.+.
T Consensus 200 GTysfDt~~~~W~~~GdW~LP----F~G~-a~y~~el~~W~Gls~~~~~~~lca~dv~~~ 254 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLP----FHGQ-AEYVPELDLWFGLSSDGGGGHLCACDVSSA 254 (342)
T ss_pred EEEEEEcCCcceeeccceecC----cCCc-cEECCCcCeEEEeccCCCCcEEEEEecccc
Confidence 456666777899999754222 2233 667666667777543332368899999884
No 74
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=49.52 E-value=35 Score=25.08 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=14.8
Q ss_pred CCeEEEEeCCCCcEEEEE
Q 048294 319 SNQMILYDPRTEEMKNFG 336 (375)
Q Consensus 319 ~~~~~~yd~~~~~~~~v~ 336 (375)
.++++.||++|++.+.+.
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 478999999999988663
No 75
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=49.29 E-value=1.9e+02 Score=25.69 Aligned_cols=116 Identities=14% Similarity=0.218 Sum_probs=60.9
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCcee-eeecCCCCCCCc--------cce--eEEecCeEEEEEec-CCCcEEE
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEVY-EEIQGPCLPQSV--------YVV--MGLYKECISLLVLK-TIEFCFE 280 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~-~~i~lP~~~~~~--------~~~--l~~~~g~L~l~~~~-~~~~~~~ 280 (375)
-|+.||++|+.. .....|+.||++++.- ....+|...... +.. +.+-+.-|.++-.. .+...+.
T Consensus 73 ~VVynGs~yynk----~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv 148 (249)
T KOG3545|consen 73 HVVYNGSLYYNK----AGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIV 148 (249)
T ss_pred eEEEcceEEeec----cCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEE
Confidence 799999999987 4677999999999643 444566543211 111 11122224443332 2333444
Q ss_pred EEEEcC------ceeeEEEEECCCCCccccEEEeecCcEEEEec----CCeE-EEEeCCCCcEEEEEE
Q 048294 281 IWTMKD------KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ----SNQM-ILYDPRTEEMKNFGL 337 (375)
Q Consensus 281 iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~----~~~~-~~yd~~~~~~~~v~~ 337 (375)
|=.|+. ..|.-.+.-. .. --++.-+|-+..... ...+ ++||..+++-+.+.+
T Consensus 149 ~skLdp~tl~~e~tW~T~~~k~---~~--~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 149 LSKLDPETLEVERTWNTTLPKR---SA--GNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred eeccCHHHhheeeeeccccCCC---Cc--CceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 455554 3443222110 11 112233455544432 2333 689999888877664
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=48.04 E-value=2.4e+02 Score=26.47 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=53.7
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCce--eeeecCCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC--ce
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEV--YEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD--KE 288 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~ 288 (375)
++..+|.+|.-. ....+.+||..+.+ |+. .++...... . ...++.+.+.. .+..+..|-.+. ..
T Consensus 101 p~v~~~~v~v~~-----~~g~l~ald~~tG~~~W~~-~~~~~~~~~-p--~v~~~~v~v~~---~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 101 VGADGGLVFVGT-----EKGEVIALDAEDGKELWRA-KLSSEVLSP-P--LVANGLVVVRT---NDGRLTALDAATGERL 168 (377)
T ss_pred eEEcCCEEEEEc-----CCCEEEEEECCCCcEeeee-ccCceeecC-C--EEECCEEEEEC---CCCeEEEEEcCCCcee
Confidence 566677887544 45689999986654 442 333221110 1 12244433322 123344444433 44
Q ss_pred eeEEEEECCC--CCccccEEEeecCcEEEEecCCeEEEEeCCCCcEEE
Q 048294 289 WTKKLTVGPF--EGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKN 334 (375)
Q Consensus 289 W~~~~~i~~~--~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~ 334 (375)
|......+.. .....|.. .++.+++...+++++.+|+++++..+
T Consensus 169 W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred eEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 5543321111 01123332 23555666667899999999886543
No 77
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=47.24 E-value=3.1e+02 Score=27.51 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=57.8
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCc--eeee-ecCCCCCCC------ccceeEEecCeEEEEEecCCCcEEEEEE
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDE--VYEE-IQGPCLPQS------VYVVMGLYKECISLLVLKTIEFCFEIWT 283 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e--~~~~-i~lP~~~~~------~~~~l~~~~g~L~l~~~~~~~~~~~iW~ 283 (375)
++..+|.+|... ....|.++|..+. .|+. ...|..... ...-+...+|++.+.... =.|..
T Consensus 65 Pvv~~g~vyv~s-----~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-----g~l~A 134 (527)
T TIGR03075 65 PLVVDGVMYVTT-----SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-----ARLVA 134 (527)
T ss_pred CEEECCEEEEEC-----CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-----CEEEE
Confidence 889999999865 3457999999875 4543 233322110 001122345555443321 12444
Q ss_pred EcC----ceeeEEEEECCCC--C-ccccEEEeecCcEEEEec------CCeEEEEeCCCCcEEEE
Q 048294 284 MKD----KEWTKKLTVGPFE--G-MFHPLGFWKTGGFFAENQ------SNQMILYDPRTEEMKNF 335 (375)
Q Consensus 284 l~~----~~W~~~~~i~~~~--~-~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~v 335 (375)
|+- ..|..... .... . ...|+. .++.|++... .+.+++||.+|++..+-
T Consensus 135 LDa~TGk~~W~~~~~-~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 135 LDAKTGKVVWSKKNG-DYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EECCCCCEEeecccc-cccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 443 45654321 1111 1 123432 2455555432 46899999999987753
No 78
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=44.49 E-value=26 Score=22.09 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=17.8
Q ss_pred CceEEEEEcCCCCceeecccCC
Q 048294 181 FSQTAVYNLSTNSWRYFESFKS 202 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~ 202 (375)
...+.+|+..+++|++++..|+
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCC
Confidence 4578899999999999965544
No 79
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=44.26 E-value=13 Score=34.44 Aligned_cols=38 Identities=11% Similarity=0.331 Sum_probs=31.8
Q ss_pred cCCCchHHHHHHHHccCCc--------cccceeeeccccchhhcCC
Q 048294 4 STGDFYEDAVRAILLKQPV--------KSLLRFKCVCKSWYALFED 41 (375)
Q Consensus 4 ~~~~LP~Dll~eIL~rLP~--------ksl~r~r~VcK~W~~li~~ 41 (375)
.++.||.++|.+|+.|.-- ++.+.|..|||.|+....+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4568999999999999862 3688999999999997754
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.28 E-value=2.4e+02 Score=25.06 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=90.2
Q ss_pred cceEEEeeC-CCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEE
Q 048294 108 DGIFCILGN-DNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAV 186 (375)
Q Consensus 108 nGLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 186 (375)
+|--|+.++ ++++-+|||..+....--.... . -... ....+|.+ |+ .... ..-.+.+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG-----~-EVlD-~~~s~Dns----kf---~s~G--------gDk~v~v 85 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-----H-EVLD-AALSSDNS----KF---ASCG--------GDKAVQV 85 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCC-----c-eeee-cccccccc----cc---ccCC--------CCceEEE
Confidence 677788775 4678999999876553222211 0 0111 23333322 21 1111 1347888
Q ss_pred EEcCCC----CceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCceeeeecCCCCCCCccceeEE
Q 048294 187 YNLSTN----SWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGL 262 (375)
Q Consensus 187 yss~~~----~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~~~~~~~~~l~~ 262 (375)
++..|| .||..........+ +... +|.+.|.+ ...|-++|-.+..+..|+.=+...+...-+ .
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~f-Nees-SVv~Sgsf----------D~s~r~wDCRS~s~ePiQildea~D~V~Si-~ 152 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRF-NEES-SVVASGSF----------DSSVRLWDCRSRSFEPIQILDEAKDGVSSI-D 152 (307)
T ss_pred EEcccCeeeeecccccceeeEEEe-cCcc-eEEEeccc----------cceeEEEEcccCCCCccchhhhhcCceeEE-E
Confidence 888887 46654433221222 2233 56666652 457788999999988887655443322111 2
Q ss_pred ecCeEEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCcccc---EEEeecCcEEEEec-CCeEEEEeCCCCcEEE
Q 048294 263 YKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHP---LGFWKTGGFFAENQ-SNQMILYDPRTEEMKN 334 (375)
Q Consensus 263 ~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~---~~~~~~~~ll~~~~-~~~~~~yd~~~~~~~~ 334 (375)
..+...+.... +.++...-+.. -++ ..+.+..| +++.+++...+... +..+-..|-+|+++-.
T Consensus 153 v~~heIvaGS~--DGtvRtydiR~------G~l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 153 VAEHEIVAGSV--DGTVRTYDIRK------GTL-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ecccEEEeecc--CCcEEEEEeec------cee-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 33443333332 22222222111 000 11233333 45567777755433 5556667777765543
No 81
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=42.81 E-value=3e+02 Score=26.11 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=56.9
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCce--eeeecCCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC--ce
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEV--YEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD--KE 288 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~ 288 (375)
++..+|.+|... ....+.++|..+.+ |+. +++... .+...+|++++... ...+...-.+. ..
T Consensus 252 P~v~~~~vy~~~-----~~g~l~ald~~tG~~~W~~-~~~~~~-----~~~~~~~~vy~~~~---~g~l~ald~~tG~~~ 317 (394)
T PRK11138 252 PVVVGGVVYALA-----YNGNLVALDLRSGQIVWKR-EYGSVN-----DFAVDGGRIYLVDQ---NDRVYALDTRGGVEL 317 (394)
T ss_pred cEEECCEEEEEE-----cCCeEEEEECCCCCEEEee-cCCCcc-----CcEEECCEEEEEcC---CCeEEEEECCCCcEE
Confidence 788999999876 35689999998764 543 221110 11233555554432 12222222222 34
Q ss_pred eeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcEEE
Q 048294 289 WTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKN 334 (375)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~ 334 (375)
|.... ... .....|+. .++.+++...++.++.+|.++++...
T Consensus 318 W~~~~-~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 318 WSQSD-LLH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred Ecccc-cCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 54321 110 11223432 36777777778889999999987664
No 82
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.37 E-value=1.9e+02 Score=27.22 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=68.8
Q ss_pred ceEEEEEcCCCCceeecccCCcccccCCCCcceEeCc-cEEEeeee----------------------------------
Q 048294 182 SQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDG-GCYWLLEL---------------------------------- 226 (375)
Q Consensus 182 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~---------------------------------- 226 (375)
..+..|+..+++|...+...+-. ... .. ++..+| .+|....-
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~g-l~G-~~-~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTG-LVG-AS-TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred eeeEEecCCCChhheeccccccc-ccc-ce-eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 35778999999999998764332 212 22 444444 67776521
Q ss_pred -ccCCceEEEEEECCCceeeee-cCCCCCCCccceeEEecCeEEEEEecC--CCcEEEEEEEcC----ceeeEEEEECCC
Q 048294 227 -RSNGHKVVLSFDLGDEVYEEI-QGPCLPQSVYVVMGLYKECISLLVLKT--IEFCFEIWTMKD----KEWTKKLTVGPF 298 (375)
Q Consensus 227 -~~~~~~~il~fDl~~e~~~~i-~lP~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l~~----~~W~~~~~i~~~ 298 (375)
+..-...+++||..++.|+.. ..|........ ....+++|.++...- .-.+-++|+.+- ..|.+....+..
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa-~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccCccCcc-eeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 011244689999999999987 46765543322 223466687776631 224455555442 889998766643
No 83
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=41.69 E-value=1.9e+02 Score=24.59 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=35.2
Q ss_pred EEEEEEEcC--ceeeEEEEECCCCCccccEE-Eee-cCcEEEEe--------cCCeEEEEeCCCCcEEEEEE
Q 048294 278 CFEIWTMKD--KEWTKKLTVGPFEGMFHPLG-FWK-TGGFFAEN--------QSNQMILYDPRTEEMKNFGL 337 (375)
Q Consensus 278 ~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~-~~~-~~~ll~~~--------~~~~~~~yd~~~~~~~~v~~ 337 (375)
.=+||+.+. .+|.. ..|+..+.-..|-. .|- +..+++.. .++.|+.||+.+++++.+.-
T Consensus 87 iGkIYIkn~~~~~~~~-L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWS-LQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ceeEEEEecCCCceEE-EEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 357788775 56633 23444433333433 343 34454432 26789999999999998863
No 84
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=41.23 E-value=2.6e+02 Score=26.38 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=49.9
Q ss_pred CcEEEEEEEcCceeeEEEEECCCCCccccEEEeec-CcEEEEecCCeEEEEeCCCCcEEEEEEecc-ce--EEEEeecCc
Q 048294 276 EFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKT-GGFFAENQSNQMILYDPRTEEMKNFGLNSL-HF--QVFNYTETL 351 (375)
Q Consensus 276 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~yd~~~~~~~~v~~~~~-~~--~~~~y~~SL 351 (375)
+.++.||=+ ..|..++.....+++.+ ..|.+ ..++-.+.++++..||.+|++++-...... .. .++....++
T Consensus 307 dG~i~iyD~--a~~~~R~~c~he~~V~~--l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 307 DGTIAIYDL--AASTLRHICEHEDGVTK--LKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred cceEEEEec--ccchhheeccCCCceEE--EEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence 445555544 45666666555444322 23444 445556668999999999999886543221 11 233445666
Q ss_pred ccCCCCCCCcceeeee
Q 048294 352 IPIKGDDSLSGFFEIP 367 (375)
Q Consensus 352 v~l~~~~~~~~~~~~~ 367 (375)
|--.+++.-..-|+.|
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 6555555555555443
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=38.90 E-value=3.3e+02 Score=25.49 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=69.7
Q ss_pred eEEEEEcCCC--CceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCce--eee-ecCCCCCCC--
Q 048294 183 QTAVYNLSTN--SWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEV--YEE-IQGPCLPQS-- 255 (375)
Q Consensus 183 ~~~vyss~~~--~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~-i~lP~~~~~-- 255 (375)
.+..++..++ .|+.....+.. ....... ++..+|.+|.-. ....+.++|+.+++ |+. +..|.....
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~-~~~~~~s-p~~~~~~v~~~~-----~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPAL-TLRGSAS-PVIADGGVLVGF-----AGGKLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCce-eecCCCC-CEEECCEEEEEC-----CCCEEEEEEccCCCEeeeeccccCCCCCchh
Confidence 4666776665 58755432211 1111233 678888777544 34689999998764 432 223321110
Q ss_pred ----ccceeEEecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCC
Q 048294 256 ----VYVVMGLYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRT 329 (375)
Q Consensus 256 ----~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~ 329 (375)
........+|.+.+... ...+..+-++. ..|.... . ....|. ..++.+++...++.++++|.++
T Consensus 229 ~~~~~~~~p~~~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~~--~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 229 RLVDVDGDPVVDGGQVYAVSY---QGRVAALDLRSGRVLWKRDA--S---SYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hhhccCCccEEECCEEEEEEc---CCEEEEEECCCCcEEEeecc--C---CccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 00001123555544332 33455555544 5576541 1 112232 2356677776778999999988
Q ss_pred CcEE
Q 048294 330 EEMK 333 (375)
Q Consensus 330 ~~~~ 333 (375)
++..
T Consensus 299 G~~~ 302 (377)
T TIGR03300 299 GSEL 302 (377)
T ss_pred CcEE
Confidence 7644
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=37.91 E-value=3.2e+02 Score=25.00 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=67.3
Q ss_pred eEEEEEcCC-CCceeecccCCcccccCCCCcceEe--Ccc-EEEeeeeccCCceEEEEEECC-Cceeeeec-CCCCCCCc
Q 048294 183 QTAVYNLST-NSWRYFESFKSSHYHMPWYHDCVNL--DGG-CYWLLELRSNGHKVVLSFDLG-DEVYEEIQ-GPCLPQSV 256 (375)
Q Consensus 183 ~~~vyss~~-~~Wr~~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~il~fDl~-~e~~~~i~-lP~~~~~~ 256 (375)
.+.+|+..+ +.++.+...... .... .+.+ +|. +|... .....|.+|++. +.++..+. .|... .
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~----~~~~-~l~~spd~~~lyv~~----~~~~~i~~~~~~~~g~l~~~~~~~~~~-~- 81 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVP----GQVQ-PMVISPDKRHLYVGV----RPEFRVLSYRIADDGALTFAAESPLPG-S- 81 (330)
T ss_pred CEEEEEECCCCceeeeeEEecC----CCCc-cEEECCCCCEEEEEE----CCCCcEEEEEECCCCceEEeeeecCCC-C-
Confidence 567777754 566655533211 0111 3333 454 45543 235678888886 44555442 22211 1
Q ss_pred cceeE-EecCeEEEEEecCCCcEEEEEEEcC-ce-eeEEEEECCCCCccccEEEeecCcEEEEec--CCeEEEEeCCC
Q 048294 257 YVVMG-LYKECISLLVLKTIEFCFEIWTMKD-KE-WTKKLTVGPFEGMFHPLGFWKTGGFFAENQ--SNQMILYDPRT 329 (375)
Q Consensus 257 ~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~-~~-W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~yd~~~ 329 (375)
...+. .-+|+..++... ....+.+|-++. .. ......+.... ....+.+.++|+.++... ++.+..||+++
T Consensus 82 p~~i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 82 PTHISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ceEEEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 12232 336665555443 467889998874 22 22222222111 112234567777665433 57899999876
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=35.98 E-value=41 Score=32.65 Aligned_cols=30 Identities=20% Similarity=0.503 Sum_probs=25.4
Q ss_pred ecCcEEEEecCCeEEEEeCCCCcEEEEEEe
Q 048294 309 KTGGFFAENQSNQMILYDPRTEEMKNFGLN 338 (375)
Q Consensus 309 ~~~~ll~~~~~~~~~~yd~~~~~~~~v~~~ 338 (375)
-+|+-++.+.++.++.||++|.+++++.|.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 457776767889999999999999999874
No 88
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.93 E-value=25 Score=28.00 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=19.9
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCc
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDE 242 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e 242 (375)
-+.-+|++||+........-.|+.|+..+.
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~~ 72 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVTD 72 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEecC
Confidence 355589999999533223456788877654
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=35.30 E-value=3.4e+02 Score=25.00 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=37.9
Q ss_pred CcEEEEEEEcC-ceeeEEEEECCCCCcc-ccEEE-e-ecCc-EEEEecCCeEEEEeCCCCcEEEEEEecc
Q 048294 276 EFCFEIWTMKD-KEWTKKLTVGPFEGMF-HPLGF-W-KTGG-FFAENQSNQMILYDPRTEEMKNFGLNSL 340 (375)
Q Consensus 276 ~~~~~iW~l~~-~~W~~~~~i~~~~~~~-~~~~~-~-~~~~-ll~~~~~~~~~~yd~~~~~~~~v~~~~~ 340 (375)
+.++.+|.+++ ..=+-+-. .... .++++ | ++|. ++....++.+-.||+.+++...|..+..
T Consensus 49 D~tVR~wevq~~g~~~~ka~----~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQ----QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred CCceEEEEEecCCcccchhh----hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccc
Confidence 57899999987 22111111 1122 23333 3 4454 4555668899999999999999986543
No 90
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=34.79 E-value=3.9e+02 Score=25.06 Aligned_cols=153 Identities=11% Similarity=0.098 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCceeeee----cCCCCCCCc
Q 048294 181 FSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEI----QGPCLPQSV 256 (375)
Q Consensus 181 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i----~lP~~~~~~ 256 (375)
..++.+|++.+|.=............+.+-- .-+=||.+=++.. +..+.-.++.+|....++..+ -+|+.....
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi-~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHI-VFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceE-EEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 3488899998776554432211000111111 2333564444441 122344555666666888776 467765432
Q ss_pred c--c-eeEEecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEec--CCeEEEE--eC
Q 048294 257 Y--V-VMGLYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ--SNQMILY--DP 327 (375)
Q Consensus 257 ~--~-~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~y--d~ 327 (375)
. . .-..-+|+.-+++-+. -..|.+...++ +.=......+..-...|-+-+..+|++|+... +..+.+| |.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg-~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRG-HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CceeEEEECCCCCEEEEecCC-CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 2 1 1225588877776653 33455555555 33222222222112346666677788766543 3445554 78
Q ss_pred CCCcEEEEE
Q 048294 328 RTEEMKNFG 336 (375)
Q Consensus 328 ~~~~~~~v~ 336 (375)
+|+++..+.
T Consensus 323 ~TG~L~~~~ 331 (346)
T COG2706 323 ETGRLTLLG 331 (346)
T ss_pred CCceEEecc
Confidence 888888765
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=34.76 E-value=5.1e+02 Score=26.75 Aligned_cols=89 Identities=11% Similarity=0.174 Sum_probs=53.6
Q ss_pred CceEEEEEECCCceeeeecCCCCCCCccce-eE-EecCeEEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCccccEEE
Q 048294 230 GHKVVLSFDLGDEVYEEIQGPCLPQSVYVV-MG-LYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGF 307 (375)
Q Consensus 230 ~~~~il~fDl~~e~~~~i~lP~~~~~~~~~-l~-~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (375)
....|.--|+..|...++..-.. +-+ +. ..++.+.+.|. ++.+++||--++ .+..|..+.....-..+
T Consensus 198 NDg~Ir~w~~~ge~l~~~~ghtn----~vYsis~~~~~~~Ivs~g--EDrtlriW~~~e----~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 198 NDGSIRLWDLDGEVLLEMHGHTN----FVYSISMALSDGLIVSTG--EDRTLRIWKKDE----CVQVITLPTTSIWSAKV 267 (745)
T ss_pred CCceEEEEeccCceeeeeeccce----EEEEEEecCCCCeEEEec--CCceEEEeecCc----eEEEEecCccceEEEEE
Confidence 44566666776666665532111 111 22 45677777666 688999998773 33334433212233455
Q ss_pred eecCcEEEEecCCeEEEEeCC
Q 048294 308 WKTGGFFAENQSNQMILYDPR 328 (375)
Q Consensus 308 ~~~~~ll~~~~~~~~~~yd~~ 328 (375)
..+|+|+....++.+.+|-.+
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeCCCEEEeccCceEEEEEec
Confidence 678999888888888887655
No 92
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.70 E-value=7e+02 Score=27.70 Aligned_cols=124 Identities=11% Similarity=0.112 Sum_probs=67.3
Q ss_pred ceEEEEEECCCceeeeecCCCCCCCc-cceeE-EecCe-EEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCccccEEE
Q 048294 231 HKVVLSFDLGDEVYEEIQGPCLPQSV-YVVMG-LYKEC-ISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGF 307 (375)
Q Consensus 231 ~~~il~fDl~~e~~~~i~lP~~~~~~-~~~l~-~~~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (375)
...|+-|.-...+-..+.+|...+.. ...+. ..++. |.++........+++|..++..|-++..+..++... -.
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~---~~ 341 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL---LM 341 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc---cc
Confidence 34677777666666666555544332 11122 22333 444444435566999999999999998887654322 11
Q ss_pred ee---cCcEEEEecCCeEEEEeCC--CCc----EEEEE-EeccceEEEEeecCcccCCCC
Q 048294 308 WK---TGGFFAENQSNQMILYDPR--TEE----MKNFG-LNSLHFQVFNYTETLIPIKGD 357 (375)
Q Consensus 308 ~~---~~~ll~~~~~~~~~~yd~~--~~~----~~~v~-~~~~~~~~~~y~~SLv~l~~~ 357 (375)
|+ .-.+.+...++..++||.. +.. ...+. |+|....+.++-++++|+|.-
T Consensus 342 W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDgs~llvT~ls~~vvPPPM~ 401 (1265)
T KOG1920|consen 342 WDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTVYVIDGSRLLVTPLSLAVVPPPMC 401 (1265)
T ss_pred ccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceEEEEeCCEEEEecchhhcCCCCce
Confidence 21 1223333234555554432 111 12222 566556777778888887743
No 93
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=33.13 E-value=4.3e+02 Score=25.05 Aligned_cols=187 Identities=12% Similarity=0.040 Sum_probs=95.3
Q ss_pred ecceEEEeeCCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCceEEE
Q 048294 107 YDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAV 186 (375)
Q Consensus 107 ~nGLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 186 (375)
.+|.|.+...++.++-+|+.|++.++--..+.. .... ..+ .+ . +|+... . .-.+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------~~ss-P~v-~~----~-~v~v~~---~--------~g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE------ALSR-PVV-SD----G-LVLVHT---S--------NGMLQA 174 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCc------eecC-CEE-EC----C-EEEEEC---C--------CCEEEE
Confidence 467777776666789999999876542221110 0000 000 11 1 222211 1 225667
Q ss_pred EEcCCC--CceeecccCCcccccCCCCcceEeCccEEEeeeeccCCceEEEEEECCCce--eee-ecCCCCCCC------
Q 048294 187 YNLSTN--SWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEV--YEE-IQGPCLPQS------ 255 (375)
Q Consensus 187 yss~~~--~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~-i~lP~~~~~------ 255 (375)
++..+| .|+.....+... ...... ++..+|.+|+-. ....+.++|..+.+ |+. +..|.....
T Consensus 175 ld~~tG~~~W~~~~~~~~~~-~~~~~s-P~v~~~~v~~~~-----~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLT-LRGESA-PATAFGGAIVGG-----DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred EEccCCCEeeeecCCCCccc-ccCCCC-CEEECCEEEEEc-----CCCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 777776 488754322111 111234 778889888865 45678999998765 432 222322110
Q ss_pred ccceeEEecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcEE
Q 048294 256 VYVVMGLYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMK 333 (375)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~ 333 (375)
........+|.+.+... +..+.-.-++. ..|.+.. .. ...+ +..++.+++...+++++++|.++++..
T Consensus 248 ~~~sP~v~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~--~~---~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 248 VDTTPVVVGGVVYALAY---NGNLVALDLRSGQIVWKREY--GS---VNDF--AVDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred cCCCcEEECCEEEEEEc---CCeEEEEECCCCCEEEeecC--CC---ccCc--EEECCEEEEEcCCCeEEEEECCCCcEE
Confidence 00011134666555443 22222222222 5676532 11 1122 224567777777889999999988654
Q ss_pred E
Q 048294 334 N 334 (375)
Q Consensus 334 ~ 334 (375)
+
T Consensus 318 W 318 (394)
T PRK11138 318 W 318 (394)
T ss_pred E
Confidence 3
No 94
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=32.73 E-value=3.6e+02 Score=24.19 Aligned_cols=69 Identities=7% Similarity=0.091 Sum_probs=41.4
Q ss_pred EecCeEEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCccccEEEeec-CcEEEEecCCeEEEEeCCCCcEEEE
Q 048294 262 LYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKT-GGFFAENQSNQMILYDPRTEEMKNF 335 (375)
Q Consensus 262 ~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~yd~~~~~~~~v 335 (375)
.++|+-.+-.. ++.++.||-|..-+=-+.+... .. -.-+..+.+ ++++....++.+-++|+.++...+.
T Consensus 92 ~~dgrWMyTgs--eDgt~kIWdlR~~~~qR~~~~~--sp-Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 92 QCDGRWMYTGS--EDGTVKIWDLRSLSCQRNYQHN--SP-VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred eecCeEEEecC--CCceEEEEeccCcccchhccCC--CC-cceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 56777555443 6889999999861111111111 00 112334444 7888888889999999988855543
No 95
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=32.28 E-value=1.7e+02 Score=26.52 Aligned_cols=69 Identities=9% Similarity=0.158 Sum_probs=47.1
Q ss_pred EecCeEEEEEecCCCcEEEEEEEcC-ceeeEEEEECCCCCccccEEEeecCcEEEEecCCeEEEEeCCCCcEE-EEE
Q 048294 262 LYKECISLLVLKTIEFCFEIWTMKD-KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMK-NFG 336 (375)
Q Consensus 262 ~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~-~v~ 336 (375)
.-+|.||.... .+..+-+|-|++ .. .+.++..+. -..+++.++.-.|..-.+..+..+|++++..- ++.
T Consensus 201 SpDGslcasGg--kdg~~~LwdL~~~k~---lysl~a~~~-v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 201 SPDGSLCASGG--KDGEAMLWDLNEGKN---LYSLEAFDI-VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred CCCCCEEecCC--CCceEEEEEccCCce---eEeccCCCe-EeeEEecCCceeEeeccCCceEEEeccchhhhhhcc
Confidence 55999988755 578899999998 33 455554432 24556666666566666777999999987543 344
No 96
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.70 E-value=1.2e+02 Score=32.08 Aligned_cols=69 Identities=14% Similarity=0.375 Sum_probs=42.7
Q ss_pred EecCeEEEEEecCCCcEEEEEEEcC-ceeeEEEEECCCCCccccEEEeecCcEEEEec-CCeEEEEeCCCCc
Q 048294 262 LYKECISLLVLKTIEFCFEIWTMKD-KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ-SNQMILYDPRTEE 331 (375)
Q Consensus 262 ~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~yd~~~~~ 331 (375)
...+.|=++.....+..+.+|.|++ ..|+.----+..-.. .-+-+++.-++++... ++.+-+||+++++
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc-ceEEecCccceeEecCCCccEEEEeccccc
Confidence 4556555555544788999999999 889874333332122 2222345556666654 5667788988764
No 97
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=31.48 E-value=4.4e+02 Score=24.63 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=56.2
Q ss_pred ceEEEEEECCCceeeeecCCCCCCCccce---eE-EecCe-EEEEEecCCCcEEEEEEEcC----ceeeEEEEECCCCCc
Q 048294 231 HKVVLSFDLGDEVYEEIQGPCLPQSVYVV---MG-LYKEC-ISLLVLKTIEFCFEIWTMKD----KEWTKKLTVGPFEGM 301 (375)
Q Consensus 231 ~~~il~fDl~~e~~~~i~lP~~~~~~~~~---l~-~~~g~-L~l~~~~~~~~~~~iW~l~~----~~W~~~~~i~~~~~~ 301 (375)
.-.+..+|+.+++...+.+|........+ +. .-+++ +.+.........+.+...+- ..+.....-..--..
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 45788899999988888887422111222 22 33555 66665554566677776654 333332221111122
Q ss_pred cccEEEe-e-cCcEEEEec---CCeEEEEeCCCCcEEEEE
Q 048294 302 FHPLGFW-K-TGGFFAENQ---SNQMILYDPRTEEMKNFG 336 (375)
Q Consensus 302 ~~~~~~~-~-~~~ll~~~~---~~~~~~yd~~~~~~~~v~ 336 (375)
..+..+. + ++.+++... ..+++.|+..++..+.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT 276 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT 276 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc
Confidence 3444444 3 455555443 347999999988866543
No 98
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.36 E-value=1.1e+02 Score=23.05 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=28.6
Q ss_pred eEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEE
Q 048294 119 RLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFT 169 (375)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~ 169 (375)
++++.+|.+++|...- . .... +.+..|+..+.|.++....
T Consensus 10 ~v~~~~~~~~~W~~~~--~--------~~g~-v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 10 QVYTADPSTGKWVPAS--G--------GTGA-VSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEECCCCCceEECC--C--------CeEE-EEEEEECCCCEEEEEEEec
Confidence 4889999999988532 1 1123 8888899888898877654
No 99
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=31.20 E-value=4.1e+02 Score=24.25 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=53.3
Q ss_pred CceEEEEEECCC-ceeeeec-CCCCCCCccceeE-EecCeEEEEEecCCCcEEEEEEEcC-ceeeEEEEECCCCCccccE
Q 048294 230 GHKVVLSFDLGD-EVYEEIQ-GPCLPQSVYVVMG-LYKECISLLVLKTIEFCFEIWTMKD-KEWTKKLTVGPFEGMFHPL 305 (375)
Q Consensus 230 ~~~~il~fDl~~-e~~~~i~-lP~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~ 305 (375)
....|-.||+.+ .+...++ ++... . ...+. .-+|+..++... ....+.+|.+++ ..+.....+... .....+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~-~-~~~l~~spd~~~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i 85 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPG-Q-VQPMVISPDKRHLYVGVR-PEFRVLSYRIADDGALTFAAESPLP-GSPTHI 85 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCC-C-CccEEECCCCCEEEEEEC-CCCcEEEEEECCCCceEEeeeecCC-CCceEE
Confidence 356777888853 3444432 22211 1 11222 235664444332 457788898876 666666555432 122345
Q ss_pred EEeecCcEEEEec--CCeEEEEeCCC
Q 048294 306 GFWKTGGFFAENQ--SNQMILYDPRT 329 (375)
Q Consensus 306 ~~~~~~~ll~~~~--~~~~~~yd~~~ 329 (375)
.+.++++.++... ++.+..||+++
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECC
Confidence 6667888766543 67889998864
No 100
>PF13013 F-box-like_2: F-box-like domain
Probab=31.00 E-value=14 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=22.9
Q ss_pred CCCchHHHHHHHHccCCccccceeeeccc
Q 048294 5 TGDFYEDAVRAILLKQPVKSLLRFKCVCK 33 (375)
Q Consensus 5 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK 33 (375)
..+||+||+..|+..-...++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45799999999999999888765555554
No 101
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.99 E-value=4.9e+02 Score=27.23 Aligned_cols=113 Identities=8% Similarity=0.069 Sum_probs=63.5
Q ss_pred ceEeCccEEEeeeec-------cCCceEEEEEECCCceeeeecCCCCCCC-----c-cce--eE--EecCeEEEEEecCC
Q 048294 213 CVNLDGGCYWLLELR-------SNGHKVVLSFDLGDEVYEEIQGPCLPQS-----V-YVV--MG--LYKECISLLVLKTI 275 (375)
Q Consensus 213 ~v~~~G~lywl~~~~-------~~~~~~il~fDl~~e~~~~i~lP~~~~~-----~-~~~--l~--~~~g~L~l~~~~~~ 275 (375)
..+..+.-||+.... ......+++-+..++.|....+|.-... + .+. +. .-++.|.+-|. .
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~--k 328 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS--K 328 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC--c
Confidence 577788888887431 1235578999999999999999986421 1 111 11 22444554444 3
Q ss_pred CcEEEEEEEcCceeeEEEEECCCCCccccEEEeecCcEEEE-ecCCeEEEEeCCC
Q 048294 276 EFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAE-NQSNQMILYDPRT 329 (375)
Q Consensus 276 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~ 329 (375)
-.++-||.++.++.+++..= .. .-...+...+||.++.. ..++++-+||..+
T Consensus 329 lgQLlVweWqsEsYVlKQQg-H~-~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQG-HS-DRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred cceEEEEEeeccceeeeccc-cc-cceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 56899998886444443320 00 01122334456665443 2356666666554
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.85 E-value=2e+02 Score=27.94 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=43.3
Q ss_pred CcEEEEEEEcCceeeEEEEECCCCCccccEEEeecCc-EEEEe-cCCeEEEEeCCCCcEEEEEE-ecc-----ceEEEEe
Q 048294 276 EFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGG-FFAEN-QSNQMILYDPRTEEMKNFGL-NSL-----HFQVFNY 347 (375)
Q Consensus 276 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~~-~~~~~~~yd~~~~~~~~v~~-~~~-----~~~~~~y 347 (375)
+..+.|..++.+.=.++..|-....-..-.++.++|. .++.. ...-++.||+++.++.++.- .|. ....+.+
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 5566677666611113333332211112234556777 55543 35568999999999999863 332 1122445
Q ss_pred ecCcccCCCC
Q 048294 348 TETLIPIKGD 357 (375)
Q Consensus 348 ~~SLv~l~~~ 357 (375)
..+++-+.+.
T Consensus 314 d~~fia~~G~ 323 (514)
T KOG2055|consen 314 DSNFIAIAGN 323 (514)
T ss_pred CCCeEEEccc
Confidence 5555555443
No 103
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=30.83 E-value=1.5e+02 Score=26.28 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=35.7
Q ss_pred cceEEEeeCCCeEEEEcccccceecc--CCCCccCCCcccccceeeeEeecCCCCCeEEEE
Q 048294 108 DGIFCILGNDNRLTLWNPANKEYRHV--PKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVL 166 (375)
Q Consensus 108 nGLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 166 (375)
+|.|--....+++|-.||.|+.-..+ .+..... .-.. ++|-|+|..+.-+||.
T Consensus 38 ~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al-----~g~~-~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 38 NGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL-----SGTA-FGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCEEEEeCCCcEEEEECCCCeEEEeecccccccc-----cCce-EEEecCcccCcEEEEc
Confidence 67665555556699999999997766 2222211 1123 8888999998877764
No 104
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=29.51 E-value=4.8e+02 Score=24.48 Aligned_cols=106 Identities=11% Similarity=0.156 Sum_probs=66.5
Q ss_pred CCceEEEEEECCCceeee---ecCCCCCCCccceeE-EecCeEEEEEecCCCcEEEEEEEcC--ceeeEEEEECCCC-C-
Q 048294 229 NGHKVVLSFDLGDEVYEE---IQGPCLPQSVYVVMG-LYKECISLLVLKTIEFCFEIWTMKD--KEWTKKLTVGPFE-G- 300 (375)
Q Consensus 229 ~~~~~il~fDl~~e~~~~---i~lP~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~-~- 300 (375)
-+.+.|..||++..+... ..++++.+.+ .|. --+|+++++... -..++.+|..+. .+-..+.++.... .
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 345677777777555433 2344443322 222 448888877664 467899999998 6777777766432 1
Q ss_pred ----ccccEEEeecCcEEEEecC--Ce--EEEEeCCCCcEEEEEE
Q 048294 301 ----MFHPLGFWKTGGFFAENQS--NQ--MILYDPRTEEMKNFGL 337 (375)
Q Consensus 301 ----~~~~~~~~~~~~ll~~~~~--~~--~~~yd~~~~~~~~v~~ 337 (375)
...-+.+..+|.+|+.++. +. ++.-|..+++++-+..
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 2355677889999887652 23 4455788888887764
No 105
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.17 E-value=2.3e+02 Score=25.25 Aligned_cols=84 Identities=8% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC--------ceeeEEEEECC-CCCccccEEEe---ecCcEEEE
Q 048294 249 GPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD--------KEWTKKLTVGP-FEGMFHPLGFW---KTGGFFAE 316 (375)
Q Consensus 249 lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--------~~W~~~~~i~~-~~~~~~~~~~~---~~~~ll~~ 316 (375)
.|....+...+-....+.+-+.+. +..+.=|...+ ..|..+..+.. ...+..+.+++ +.+.+++.
T Consensus 56 v~eqahdgpiy~~~f~d~~Lls~g---dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHDDFLLSGG---DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeeehhheeecc---CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Q ss_pred ecCCeEEEEeCCCCcEEEE
Q 048294 317 NQSNQMILYDPRTEEMKNF 335 (375)
Q Consensus 317 ~~~~~~~~yd~~~~~~~~v 335 (375)
-.+..++..|++++++++.
T Consensus 133 gGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred cCCeEEEEEEecCCEEEEE
No 106
>PF15408 PH_7: Pleckstrin homology domain
Probab=29.15 E-value=11 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=19.5
Q ss_pred ccccceeeeccccchhhcCChHHH
Q 048294 22 VKSLLRFKCVCKSWYALFEDSMFI 45 (375)
Q Consensus 22 ~ksl~r~r~VcK~W~~li~~p~F~ 45 (375)
++.++..+-|||+|-....+|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 345566777999999999999985
No 107
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=27.05 E-value=5e+02 Score=23.94 Aligned_cols=105 Identities=9% Similarity=-0.081 Sum_probs=57.8
Q ss_pred ccEEEeeeeccCCceEEEEEECCCceeeeecCCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC-ceeeEEEEEC
Q 048294 218 GGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD-KEWTKKLTVG 296 (375)
Q Consensus 218 G~lywl~~~~~~~~~~il~fDl~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~ 296 (375)
+.+||.- .....|+.+|..+.+-+.+..|...... .+..-+|.|... . ..+.++..+. ..|+......
T Consensus 37 ~~L~w~D----I~~~~i~r~~~~~g~~~~~~~p~~~~~~--~~~d~~g~Lv~~-~----~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 37 GALLWVD----ILGGRIHRLDPETGKKRVFPSPGGFSSG--ALIDAGGRLIAC-E----HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CEEEEEe----CCCCeEEEecCCcCceEEEECCCCcccc--eeecCCCeEEEE-c----cccEEEeccCCceeEEecccc
Confidence 4678887 4678999999999999999988877431 122334443322 1 2233333333 5555544443
Q ss_pred CCCCccc--cEEEeecCcEEEEecC------------CeEEEEeCCCCcEE
Q 048294 297 PFEGMFH--PLGFWKTGGFFAENQS------------NQMILYDPRTEEMK 333 (375)
Q Consensus 297 ~~~~~~~--~~~~~~~~~ll~~~~~------------~~~~~yd~~~~~~~ 333 (375)
.-...-+ -..+..+|.+++.... +.++.||+.++..+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR 156 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Confidence 2111112 2334455666654322 35888898544444
No 108
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=26.62 E-value=2.5e+02 Score=28.29 Aligned_cols=99 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCCcccCCCCccCCCCCCCCeEeeeecceEEEeeCCCeEEEEcccccceeccCCCCcc---CCCcccccceeeeEeecC
Q 048294 81 LDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRII---FPRYTTIFRTNFGFGRDP 157 (375)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~~~~~~~~s~nGLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~---~~~~~~~~~~~~~~g~d~ 157 (375)
.+-....+.-||-.....++..-+..|||||++...++.+-.|.|-+++.+..-..... .|........ .++.|..
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~sv-Tal~F~d 238 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSV-TALKFRD 238 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcc-eEEEecC
Q ss_pred CCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCC
Q 048294 158 KNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNS 193 (375)
Q Consensus 158 ~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~ 193 (375)
..-+.-| ....-.+.+|++++.+
T Consensus 239 ~gL~~aV-------------Gts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 239 DGLHVAV-------------GTSTGSVLIYDLRASK 261 (703)
T ss_pred CceeEEe-------------eccCCcEEEEEcccCC
No 109
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=26.03 E-value=2.8e+02 Score=27.44 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=20.6
Q ss_pred ceEeCccEEEeeeeccCCceEEEEEECCCce
Q 048294 213 CVNLDGGCYWLLELRSNGHKVVLSFDLGDEV 243 (375)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~ 243 (375)
++..+|.+|... ....+.++|..+.+
T Consensus 57 Pvv~~g~vy~~~-----~~g~l~AlD~~tG~ 82 (488)
T cd00216 57 PLVVDGDMYFTT-----SHSALFALDAATGK 82 (488)
T ss_pred CEEECCEEEEeC-----CCCcEEEEECCCCh
Confidence 899999999876 34688999987653
No 110
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.75 E-value=5.8e+02 Score=24.17 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=75.3
Q ss_pred CCCceEEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeec-----cCCceEEEEEECCCceeeee-cCCCC
Q 048294 179 YDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELR-----SNGHKVVLSFDLGDEVYEEI-QGPCL 252 (375)
Q Consensus 179 ~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----~~~~~~il~fDl~~e~~~~i-~lP~~ 252 (375)
.....+-+|+..++.|+.....+-.... .. ++...|..-++...+ ....-...-|.-..++|..+ .+|..
T Consensus 193 ~~n~ev~sy~p~~n~W~~~G~~pf~~~a---Gs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 193 FFNKEVLSYDPSTNQWRNLGENPFYGNA---GS-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred cccccccccccccchhhhcCcCcccCcc---Cc-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 3455677899999999999855422211 12 455556555555221 11233556677778889877 66665
Q ss_pred CCCcc-c----eeEEecCeEEEEEecC--------------------CCcEEEEEEEcCceeeEEEEECCCCCccccEEE
Q 048294 253 PQSVY-V----VMGLYKECISLLVLKT--------------------IEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGF 307 (375)
Q Consensus 253 ~~~~~-~----~l~~~~g~L~l~~~~~--------------------~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (375)
..... . +-+..+|.+-+...-. -..+-+||.+++.+|.....++. .+.--+.+
T Consensus 269 ~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~YG~s~ 346 (381)
T COG3055 269 IGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAYGVSL 346 (381)
T ss_pred CCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--CccceEEE
Confidence 54332 1 2223455554443311 12356899999999998888764 22222333
Q ss_pred eecCcEEEEe
Q 048294 308 WKTGGFFAEN 317 (375)
Q Consensus 308 ~~~~~ll~~~ 317 (375)
.-++.++++-
T Consensus 347 ~~nn~vl~IG 356 (381)
T COG3055 347 SYNNKVLLIG 356 (381)
T ss_pred ecCCcEEEEc
Confidence 3455565553
No 111
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=24.74 E-value=2.5e+02 Score=27.76 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCcEEEEEEEcC----ceeeEEEEECCCCCccccEEEeecCcEEEEec--CCeEEEEeCCCCcEEE
Q 048294 275 IEFCFEIWTMKD----KEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQ--SNQMILYDPRTEEMKN 334 (375)
Q Consensus 275 ~~~~~~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~yd~~~~~~~~ 334 (375)
....+.+|-.+. -.|.+.|.-+. +-+|+....+.++... +.+++.||...++...
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~-----~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPC-----RGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCc-----CcceecCCccceEEEecccceEEEeecccccccc
Confidence 467799998887 67888887654 4456666677666543 7899999998776553
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.02 E-value=4.3e+02 Score=26.22 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCceEEEEEECCCc--eeeeecCCCCCCCcc--ceeEEecCeEEEEEecCCCcEEEEEEEcCceeeEEEEECCCCCcccc
Q 048294 229 NGHKVVLSFDLGDE--VYEEIQGPCLPQSVY--VVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHP 304 (375)
Q Consensus 229 ~~~~~il~fDl~~e--~~~~i~lP~~~~~~~--~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~ 304 (375)
++...|-..|+..- ++-.-+|++...+.+ .+...-+|+--++.. +..++.||-|....=..+..+...-.....
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG--eastlsiWDLAapTprikaeltssapaCyA 514 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYA 514 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc--ccceeeeeeccCCCcchhhhcCCcchhhhh
Confidence 45667777777643 222335555433333 222234777656655 478899999886111111111111112344
Q ss_pred EEEeecCcEEEE-ecCCeEEEEeCCCCcEEE
Q 048294 305 LGFWKTGGFFAE-NQSNQMILYDPRTEEMKN 334 (375)
Q Consensus 305 ~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~~ 334 (375)
+++..|.++.|. +.++++.+||+.++.+-+
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 566778888664 458899999998877653
No 113
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.00 E-value=33 Score=30.71 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHccCC-ccccceeeeccccchhhcCChHHHH
Q 048294 6 GDFYEDAVRAILLKQP-VKSLLRFKCVCKSWYALFEDSMFIR 46 (375)
Q Consensus 6 ~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~p~F~~ 46 (375)
.+||.+++.+||.||| -.+|.....|--.-..++++..-.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 4899999999999999 7888888777666666666554333
No 114
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.77 E-value=7.8e+02 Score=24.64 Aligned_cols=123 Identities=10% Similarity=0.099 Sum_probs=69.0
Q ss_pred cCCCCCeEEEEEEEEecCCCCCCCCCceEEEEEcCCCCceeeccc-CCcccccCCCCcceEeCccEEEeee------ec-
Q 048294 156 DPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESF-KSSHYHMPWYHDCVNLDGGCYWLLE------LR- 227 (375)
Q Consensus 156 d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~-~~~~~~~~~~~~~v~~~G~lywl~~------~~- 227 (375)
...++.-|.+.+....+-. --..-..++++-+|...... ..+... +-.. ++.++..+|.+.. +.
T Consensus 210 eKDs~~skmvvyGGM~G~R------LgDLW~Ldl~Tl~W~kp~~~G~~PlPR-SLHs-a~~IGnKMyvfGGWVPl~~~~~ 281 (830)
T KOG4152|consen 210 EKDSKKSKMVVYGGMSGCR------LGDLWTLDLDTLTWNKPSLSGVAPLPR-SLHS-ATTIGNKMYVFGGWVPLVMDDV 281 (830)
T ss_pred eccCCcceEEEEccccccc------ccceeEEecceeecccccccCCCCCCc-cccc-ceeecceeEEecceeeeecccc
Confidence 4444556666665443221 12344678888899887633 111111 1122 7788888886651 10
Q ss_pred -----c---CCceEEEEEECCCceeeeecCCCCCCC------ccceeEEecCeEEEEEecC--------CCcEEEEEEEc
Q 048294 228 -----S---NGHKVVLSFDLGDEVYEEIQGPCLPQS------VYVVMGLYKECISLLVLKT--------IEFCFEIWTMK 285 (375)
Q Consensus 228 -----~---~~~~~il~fDl~~e~~~~i~lP~~~~~------~~~~l~~~~g~L~l~~~~~--------~~~~~~iW~l~ 285 (375)
. .....+-++|+.+.+|..+-+-...+. ...+-...+.+|++...++ .-..-++|.|+
T Consensus 282 ~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLd 361 (830)
T KOG4152|consen 282 KVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLD 361 (830)
T ss_pred ccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhc
Confidence 0 124568899999999987643222111 0123346788888888753 22346788877
Q ss_pred C
Q 048294 286 D 286 (375)
Q Consensus 286 ~ 286 (375)
-
T Consensus 362 T 362 (830)
T KOG4152|consen 362 T 362 (830)
T ss_pred c
Confidence 4
No 115
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=22.28 E-value=5.8e+02 Score=22.95 Aligned_cols=108 Identities=9% Similarity=0.046 Sum_probs=63.0
Q ss_pred CCceEEEEEECCCceeeeecCCCCCCCccceeEEecCeEEEEEecCCCcEEEEEEEcC----ceeeEEEEECCCCCcccc
Q 048294 229 NGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKD----KEWTKKLTVGPFEGMFHP 304 (375)
Q Consensus 229 ~~~~~il~fDl~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~----~~W~~~~~i~~~~~~~~~ 304 (375)
.....|-+-|+.+..+.....|+....-...-...+|+...+.- ...+.-+|.|-. ..-.-+..+..-.+ +..
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il 219 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEPVHKFQAHNG-HIL 219 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccCCCccccceEhhheecccc-eEE
Confidence 35678999999999999988888764322332355777544433 567788998775 11111222221111 111
Q ss_pred EE-EeecCcEEEEec-CCeEEEEeCCCCcEEEEEEec
Q 048294 305 LG-FWKTGGFFAENQ-SNQMILYDPRTEEMKNFGLNS 339 (375)
Q Consensus 305 ~~-~~~~~~ll~~~~-~~~~~~yd~~~~~~~~v~~~~ 339 (375)
.| ..++++.|..+. +..+..++.++-..-+..+.+
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 12 246777666554 566888998887333445544
Done!