BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048295
(80 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224130590|ref|XP_002328327.1| predicted protein [Populus trichocarpa]
gi|222838042|gb|EEE76407.1| predicted protein [Populus trichocarpa]
Length = 78
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 4 SCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSS 63
+CRR ++L L+F+F + + HGSRSTNVFN P + Q GHFL FLPRH PIP+S
Sbjct: 4 ACRRPLTLLLCLFFLFFIFFVGYSHGSRSTNVFNFKPKT--QYKGHFLNFLPRHLPIPTS 61
Query: 64 GPSRKHNGIGLQNWRSP 80
GPSR+HNGIGLQNWRSP
Sbjct: 62 GPSRRHNGIGLQNWRSP 78
>gi|255585419|ref|XP_002533404.1| conserved hypothetical protein [Ricinus communis]
gi|223526749|gb|EEF28977.1| conserved hypothetical protein [Ricinus communis]
Length = 87
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 3/56 (5%)
Query: 26 HCHGSRST-NVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
+CHGSR+T NVF++ P + H+ GHFL FLPRHFPIP+SGPSR+HN IGLQ+WRSP
Sbjct: 34 YCHGSRTTANVFDVKPKNQHR--GHFLNFLPRHFPIPTSGPSRRHNDIGLQSWRSP 87
>gi|357464559|ref|XP_003602561.1| Protein IDA-like protein [Medicago truncatula]
gi|355491609|gb|AES72812.1| Protein IDA-like protein [Medicago truncatula]
Length = 76
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 26 HCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
HC GSR+TNVF + P H+ GHF GFLPR PIP S PSRKHN IGLQ+ RSP
Sbjct: 24 HCDGSRATNVFKVKPKYEHK--GHFFGFLPRRIPIPYSSPSRKHNDIGLQSLRSP 76
>gi|357519819|ref|XP_003630198.1| Protein IDA-like protein [Medicago truncatula]
gi|357519903|ref|XP_003630240.1| Protein IDA-like protein [Medicago truncatula]
gi|355524220|gb|AET04674.1| Protein IDA-like protein [Medicago truncatula]
gi|355524262|gb|AET04716.1| Protein IDA-like protein [Medicago truncatula]
Length = 76
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 27 CHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
CHGSR+TN F + P S HQ GHF GFLP+ IP S PSRKHN IGL++WRSP
Sbjct: 25 CHGSRTTNDFKVKPKSEHQ--GHFFGFLPKRMHIPYSTPSRKHNDIGLRSWRSP 76
>gi|388514557|gb|AFK45340.1| unknown [Medicago truncatula]
Length = 76
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 26 HCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
HC GSR+TNVF + P H+ GHF GFLP PIP S PSRKHN IGLQ+ RSP
Sbjct: 24 HCDGSRATNVFKVKPKYEHK--GHFFGFLPGRIPIPYSSPSRKHNDIGLQSLRSP 76
>gi|145334901|ref|NP_001078796.1| protein IDA-LIKE 2 [Arabidopsis thaliana]
gi|75120856|sp|Q6DUW9.1|IDL2_ARATH RecName: Full=Protein IDA-LIKE 2; Flags: Precursor
gi|49425314|gb|AAT66015.1| ida like-protein 2 [Arabidopsis thaliana]
gi|332010551|gb|AED97934.1| protein IDA-LIKE 2 [Arabidopsis thaliana]
Length = 95
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
C+G+R+ TNVFN P+ H T FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct: 34 CNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90
>gi|297794057|ref|XP_002864913.1| hypothetical protein ARALYDRAFT_496681 [Arabidopsis lyrata subsp.
lyrata]
gi|297310748|gb|EFH41172.1| hypothetical protein ARALYDRAFT_496681 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
C+G+R+ +NVF+ P+ H + FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct: 30 CNGARTNSNVFDSKPHKKHNDAVSSSSKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 86
>gi|145332629|ref|NP_001078180.1| protein IDA-LIKE 4 [Arabidopsis thaliana]
gi|75120853|sp|Q6DUW6.1|IDL4_ARATH RecName: Full=Protein IDA-LIKE 4; Flags: Precursor
gi|49425320|gb|AAT66018.1| ida like-protein 4 [Arabidopsis thaliana]
gi|332642614|gb|AEE76135.1| protein IDA-LIKE 4 [Arabidopsis thaliana]
Length = 93
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
Query: 26 HCHGSR--STNVFNLTPNSPHQ----QTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
HC SR S++VF PN H + GHFLGFLPRH P+P+S PSRKHN IG+Q S
Sbjct: 33 HCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLS 92
Query: 80 P 80
P
Sbjct: 93 P 93
>gi|297830528|ref|XP_002883146.1| hypothetical protein ARALYDRAFT_898244 [Arabidopsis lyrata subsp.
lyrata]
gi|297328986|gb|EFH59405.1| hypothetical protein ARALYDRAFT_898244 [Arabidopsis lyrata subsp.
lyrata]
Length = 92
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
Query: 26 HCHGSR--STNVFNLTPNSPHQ----QTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
HC SR S++VF PN H + GHFLGFLPRH P+P+S PSRKHN +G+Q S
Sbjct: 32 HCDASRFSSSSVFYRNPNYDHNNNSMRRGHFLGFLPRHLPVPASAPSRKHNDVGIQALLS 91
Query: 80 P 80
P
Sbjct: 92 P 92
>gi|224082420|ref|XP_002306687.1| predicted protein [Populus trichocarpa]
gi|222856136|gb|EEE93683.1| predicted protein [Populus trichocarpa]
Length = 78
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 20 IFITISHCHGSRSTNVFNL-TPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWR 78
I + SH +G+R + +F + PNS + F+GFLP+ PIP SGPS++HN IGLQ+ +
Sbjct: 16 ITSSASHTYGARQSQIFKMMKPNSQNSSPSTFMGFLPKGMPIPPSGPSKRHNDIGLQSSK 75
Query: 79 S 79
S
Sbjct: 76 S 76
>gi|297807003|ref|XP_002871385.1| hypothetical protein ARALYDRAFT_908929 [Arabidopsis lyrata subsp.
lyrata]
gi|297317222|gb|EFH47644.1| hypothetical protein ARALYDRAFT_908929 [Arabidopsis lyrata subsp.
lyrata]
Length = 103
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 21/72 (29%)
Query: 27 CHGSRSTNVFNLTPNSPHQQTG-------------------HFLGFLPRHFPIPSSGPSR 67
C+G+R+TNVFN + SP +Q FLG LPR FP+P+SGPSR
Sbjct: 30 CNGARTTNVFNTS--SPPKQKDVVSPPHDHDHRQVQDHKSVQFLGSLPRQFPVPASGPSR 87
Query: 68 KHNGIGLQNWRS 79
KHN IGL + R+
Sbjct: 88 KHNEIGLSSTRT 99
>gi|145334357|ref|NP_001078560.1| protein IDA-LIKE 3 [Arabidopsis thaliana]
gi|75120854|sp|Q6DUW7.1|IDL3_ARATH RecName: Full=Protein IDA-LIKE 3; Flags: Precursor
gi|49425318|gb|AAT66017.1| ida like-protein 3 [Arabidopsis thaliana]
gi|332004066|gb|AED91449.1| protein IDA-LIKE 3 [Arabidopsis thaliana]
Length = 99
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 17/70 (24%)
Query: 27 CHGSRSTNVFNLTP--------NSPHQQTGH---------FLGFLPRHFPIPSSGPSRKH 69
C+G+R+TNVFN + + PH H FLG LPR FP+P+SGPSRKH
Sbjct: 30 CNGARTTNVFNTSSPPKQKDVVSPPHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKH 89
Query: 70 NGIGLQNWRS 79
N IGL + ++
Sbjct: 90 NEIGLSSTKT 99
>gi|357443733|ref|XP_003592144.1| hypothetical protein MTR_1g099210 [Medicago truncatula]
gi|355481192|gb|AES62395.1| hypothetical protein MTR_1g099210 [Medicago truncatula]
Length = 201
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 24 ISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQ 75
+ H +GSR VF + P + + LG LP+ PIP SGPS+KHN IG+Q
Sbjct: 145 VGHGYGSRHNQVFKVYPKTKDFPSS-VLGLLPKTMPIPPSGPSKKHNDIGIQ 195
>gi|222628850|gb|EEE60982.1| hypothetical protein OsJ_14773 [Oryza sativa Japonica Group]
Length = 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 24 ISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQN 76
+ C SR F P + HFLGFLPR PIP SGPSR+HN IGL +
Sbjct: 38 VPRCKASRGMQTFKARPLE-RGASNHFLGFLPR-GPIPPSGPSRQHNSIGLDS 88
>gi|218194831|gb|EEC77258.1| hypothetical protein OsI_15857 [Oryza sativa Indica Group]
Length = 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 24 ISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQN 76
+ C SR F P + HFLGFLPR PIP SGPSR+HN IGL +
Sbjct: 38 VPRCKASRGMQTFKARPLE-RGASNHFLGFLPR-GPIPPSGPSRQHNSIGLDS 88
>gi|413922614|gb|AFW62546.1| hypothetical protein ZEAMMB73_594824 [Zea mays]
Length = 124
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 25 SHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
S C +R F P P HFLGFLPR P P SGPSR+HN IG Q+ P
Sbjct: 71 SCCQATRGMQPFRGKPLRPGT-ANHFLGFLPRG-PAPPSGPSRQHNSIGAQDQSHP 124
>gi|226508952|ref|NP_001144302.1| uncharacterized protein LOC100277190 [Zea mays]
gi|195639870|gb|ACG39403.1| hypothetical protein [Zea mays]
Length = 105
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 25 SHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
S C +R F P P HFLGFLPR P P SGPSR+HN IG Q+ P
Sbjct: 52 SCCQATRGMQPFRGKPLRPGT-ANHFLGFLPRG-PAPPSGPSRQHNSIGAQDQSHP 105
>gi|326501122|dbj|BAJ98792.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 89
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 20 IFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
+ S C SR F P HF GFLPR PS GPSRKHN +GL
Sbjct: 30 AMASSSSCEASRGMQPFRGRPLE-RGAANHFFGFLPRGSVTPS-GPSRKHNAVGLDGQ 85
>gi|297842457|ref|XP_002889110.1| hypothetical protein ARALYDRAFT_316610 [Arabidopsis lyrata subsp.
lyrata]
gi|297334951|gb|EFH65369.1| hypothetical protein ARALYDRAFT_316610 [Arabidopsis lyrata subsp.
lyrata]
Length = 109
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 50 FLGFLPRHFPIPSSGPSRKHNGIGLQ 75
F GFLP+ PIP S PSRKHN GLQ
Sbjct: 68 FSGFLPKTLPIPPSAPSRKHNVYGLQ 93
>gi|297723579|ref|NP_001174153.1| Os04g0686100 [Oryza sativa Japonica Group]
gi|90399177|emb|CAH68358.1| H0723C07.9 [Oryza sativa Indica Group]
gi|125550301|gb|EAY96123.1| hypothetical protein OsI_18001 [Oryza sativa Indica Group]
gi|125592134|gb|EAZ32484.1| hypothetical protein OsJ_16700 [Oryza sativa Japonica Group]
gi|255675902|dbj|BAH92881.1| Os04g0686100 [Oryza sativa Japonica Group]
Length = 89
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 24 ISHC-HGSRS--TNVFNLTPNSP---HQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQN 76
++ C G+R+ + N TP++ ++G G+LPR IP SGPS +HN IG +N
Sbjct: 21 VASCVDGARTMQASYINRTPSTAPTAMMRSGRLFGYLPRAKLIPPSGPSERHNAIGPEN 79
>gi|186495904|ref|NP_001077835.2| inflorescence deficient in abscission (IDA)-like 5 protein
[Arabidopsis thaliana]
gi|334302823|sp|Q6DUW8.2|IDL5_ARATH RecName: Full=Protein IDA-LIKE 5; Flags: Precursor
gi|332197788|gb|AEE35909.1| inflorescence deficient in abscission (IDA)-like 5 protein
[Arabidopsis thaliana]
Length = 111
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 25 SHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQ 75
+H H ++ N + P S F GFLP+ PIP S PSRKHN GLQ
Sbjct: 52 NHHHQNQGFNGDDYPPES-------FSGFLPKTLPIPHSAPSRKHNVYGLQ 95
>gi|49425316|gb|AAT66016.1| ida like-protein 5 [Arabidopsis thaliana]
Length = 103
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 50 FLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
F GFLP+ PIP S PSRKHN GLQ+ S
Sbjct: 70 FSGFLPKTLPIPHSAPSRKHNVYGLQSTNS 99
>gi|255566803|ref|XP_002524385.1| conserved hypothetical protein [Ricinus communis]
gi|223536346|gb|EEF37996.1| conserved hypothetical protein [Ricinus communis]
Length = 96
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 11 MILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQT------------------GHFLG 52
MIL L+FIF + +S C + V + Q+
Sbjct: 15 MILCLFFIFSVLAVSSCVNAARPGVTLMVDKRVLMQSETTKPDHRKLYDTSFMYRNQMFN 74
Query: 53 FLPRHFPIPSSGPSRKHNGI 72
FLP+ PIP SGPS++HN I
Sbjct: 75 FLPKGVPIPPSGPSKRHNSI 94
>gi|356533931|ref|XP_003535511.1| PREDICTED: protein IDA-like [Glycine max]
Length = 94
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 5 CRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSP-----HQQ-----TGHFLGFL 54
C+ + ILL++ + + C R+ L S QQ G FL
Sbjct: 14 CKSFSMAILLVYLLLV----GSCTAIRTGATMRLNEGSELLRRKQQQPRFPYKGLVFNFL 69
Query: 55 PRHFPIPSSGPSRKHNGI 72
P+ PIP SGPS++HN +
Sbjct: 70 PKGVPIPPSGPSKRHNSV 87
>gi|413918285|gb|AFW58217.1| hypothetical protein ZEAMMB73_621767 [Zea mays]
Length = 78
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 47 TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWR 78
+ FLGFLPR P SGPSR+H+ +GL++ R
Sbjct: 44 SNSFLGFLPRQA-APPSGPSRQHDSVGLESQR 74
>gi|18409117|ref|NP_564941.1| protein IDA [Arabidopsis thaliana]
gi|75154765|sp|Q8LAD7.1|IDA_ARATH RecName: Full=Protein IDA; AltName: Full=Protein INFLORESCENCE
DEFICIENT IN ABSCISSION; Flags: Precursor
gi|21593468|gb|AAM65435.1| unknown [Arabidopsis thaliana]
gi|94807658|gb|ABF47126.1| At1g68765 [Arabidopsis thaliana]
gi|332196716|gb|AEE34837.1| protein IDA [Arabidopsis thaliana]
Length = 77
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 5 CRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQ--QTGHFLGFLPRHFPIPS 62
CR +M+LL + +F+ + S +R + N + H G+LP+ PIP
Sbjct: 4 CRT--MMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHIFGYLPKGVPIPP 61
Query: 63 SGPSRKHNG 71
S PS++HN
Sbjct: 62 SAPSKRHNS 70
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.143 0.495
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,406,361,174
Number of Sequences: 23463169
Number of extensions: 49611875
Number of successful extensions: 123358
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 123313
Number of HSP's gapped (non-prelim): 41
length of query: 80
length of database: 8,064,228,071
effective HSP length: 51
effective length of query: 29
effective length of database: 6,867,606,452
effective search space: 199160587108
effective search space used: 199160587108
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)