BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048295
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6DUW9|IDL2_ARATH Protein IDA-LIKE 2 OS=Arabidopsis thaliana GN=IDL2 PE=2 SV=1
          Length = 95

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 6/57 (10%)

Query: 27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
          C+G+R+ TNVFN  P+  H       T  FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct: 34 CNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90


>sp|Q6DUW6|IDL4_ARATH Protein IDA-LIKE 4 OS=Arabidopsis thaliana GN=IDL4 PE=2 SV=1
          Length = 93

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 26 HCHGSR--STNVFNLTPNSPHQ----QTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
          HC  SR  S++VF   PN  H     + GHFLGFLPRH P+P+S PSRKHN IG+Q   S
Sbjct: 33 HCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLS 92

Query: 80 P 80
          P
Sbjct: 93 P 93


>sp|Q6DUW7|IDL3_ARATH Protein IDA-LIKE 3 OS=Arabidopsis thaliana GN=IDL3 PE=2 SV=1
          Length = 99

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 17/70 (24%)

Query: 27 CHGSRSTNVFNLTP--------NSPHQQTGH---------FLGFLPRHFPIPSSGPSRKH 69
          C+G+R+TNVFN +         + PH    H         FLG LPR FP+P+SGPSRKH
Sbjct: 30 CNGARTTNVFNTSSPPKQKDVVSPPHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKH 89

Query: 70 NGIGLQNWRS 79
          N IGL + ++
Sbjct: 90 NEIGLSSTKT 99


>sp|Q6DUW8|IDL5_ARATH Protein IDA-LIKE 5 OS=Arabidopsis thaliana GN=IDL5 PE=2 SV=2
          Length = 111

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 25 SHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQ 75
          +H H ++  N  +  P S       F GFLP+  PIP S PSRKHN  GLQ
Sbjct: 52 NHHHQNQGFNGDDYPPES-------FSGFLPKTLPIPHSAPSRKHNVYGLQ 95


>sp|Q8LAD7|IDA_ARATH Protein IDA OS=Arabidopsis thaliana GN=IDA PE=2 SV=1
          Length = 77

 Score = 35.0 bits (79), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  CRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQ--QTGHFLGFLPRHFPIPS 62
          CR   +M+LL + +F+  + S    +R      +  N      +  H  G+LP+  PIP 
Sbjct: 4  CRT--MMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHIFGYLPKGVPIPP 61

Query: 63 SGPSRKHNG 71
          S PS++HN 
Sbjct: 62 SAPSKRHNS 70


>sp|Q25414|5HTR_LYMST 5-hydroxytryptamine receptor OS=Lymnaea stagnalis PE=2 SV=1
          Length = 509

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 4   SCRRVPLMILLLWFIFIFITISHCHGSRSTN 34
           S RR+ LMI+++W + +FI+I    G R  N
Sbjct: 207 SARRILLMIMVVWIVALFISIPPLFGWRDPN 237


>sp|P09480|ACHA2_CHICK Neuronal acetylcholine receptor subunit alpha-2 OS=Gallus gallus
           GN=CHRNA2 PE=2 SV=1
          Length = 528

 Score = 28.9 bits (63), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8   VPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNS---PHQQTGHFLGFLPR 56
           +PL+   L F  IF+T+S        NV + +P++   PH     FLGF+PR
Sbjct: 300 IPLIGEYLLFTMIFVTLSIIITVFVLNVHHRSPSTHTMPHWVRSFFLGFIPR 351


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.143    0.495 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,223,658
Number of Sequences: 539616
Number of extensions: 1112884
Number of successful extensions: 2524
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 9
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)