Query 048295
Match_columns 80
No_of_seqs 41 out of 43
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12273 RCR: Chitin synthesis 92.1 0.094 2E-06 35.4 1.6 25 8-32 2-26 (130)
2 PF07172 GRP: Glycine rich pro 82.6 1.4 3E-05 29.3 2.6 22 9-31 5-26 (95)
3 PF11153 DUF2931: Protein of u 71.9 2.9 6.4E-05 30.1 1.9 17 17-33 6-22 (216)
4 PF15240 Pro-rich: Proline-ric 66.5 3.3 7.2E-05 30.8 1.3 20 12-31 1-20 (179)
5 PF15284 PAGK: Phage-encoded v 60.6 14 0.00031 23.5 3.2 16 47-62 39-54 (61)
6 PF13677 MotB_plug: Membrane M 59.6 8.7 0.00019 23.1 2.0 22 10-31 24-45 (58)
7 PF08139 LPAM_1: Prokaryotic m 51.8 14 0.00031 19.6 1.8 16 13-28 9-24 (25)
8 PRK10081 entericidin B membran 50.4 16 0.00034 22.2 2.1 20 13-32 8-27 (48)
9 COG5510 Predicted small secret 49.8 16 0.00036 21.9 2.1 21 12-32 7-27 (44)
10 PRK08944 motB flagellar motor 47.3 17 0.00036 28.3 2.3 22 10-31 24-45 (302)
11 PLN03207 stomagen; Provisional 46.9 38 0.00082 23.8 3.8 19 19-37 21-39 (113)
12 PRK14758 hypothetical protein; 46.5 20 0.00043 19.6 1.9 19 6-24 3-21 (27)
13 PRK06742 flagellar motor prote 46.1 16 0.00035 26.9 2.0 23 10-32 19-41 (225)
14 PRK08457 motB flagellar motor 44.4 17 0.00036 27.4 1.9 22 10-31 23-44 (257)
15 PF09680 Tiny_TM_bacill: Prote 40.1 29 0.00064 18.4 1.9 12 11-22 7-18 (24)
16 PRK06667 motB flagellar motor 39.5 28 0.0006 25.9 2.4 22 10-31 25-46 (252)
17 PRK13684 Ycf48-like protein; P 39.2 22 0.00047 27.2 1.8 20 12-31 9-28 (334)
18 PRK06925 flagellar motor prote 39.1 30 0.00066 25.3 2.5 22 10-31 22-43 (230)
19 PRK07734 motB flagellar motor 39.0 30 0.00065 25.8 2.5 22 10-31 26-47 (259)
20 PF03032 Brevenin: Brevenin/es 38.6 16 0.00036 21.6 0.9 19 13-31 7-25 (46)
21 PRK09810 entericidin A; Provis 38.0 29 0.00064 20.3 1.9 15 18-32 10-24 (41)
22 PRK06231 F0F1 ATP synthase sub 37.6 30 0.00065 25.2 2.3 21 10-30 11-31 (205)
23 PRK06778 hypothetical protein; 36.8 34 0.00074 26.4 2.6 22 10-31 29-50 (289)
24 PRK00442 tatA twin arginine tr 36.6 43 0.00092 22.6 2.7 14 14-27 10-23 (92)
25 COG2834 LolA Outer membrane li 35.7 36 0.00078 24.4 2.4 23 9-31 4-26 (211)
26 PF15347 PAG: Phosphoprotein a 34.9 47 0.001 27.9 3.2 17 15-31 28-44 (428)
27 PRK09038 flagellar motor prote 34.3 40 0.00086 25.7 2.6 22 10-31 24-45 (281)
28 PF06404 PSK: Phytosulfokine p 33.1 16 0.00034 23.7 0.2 17 19-35 4-20 (81)
29 PRK09041 motB flagellar motor 32.6 43 0.00093 26.3 2.6 22 10-31 33-54 (317)
30 TIGR02887 spore_ger_x_C germin 32.5 20 0.00044 27.2 0.7 16 16-31 7-22 (371)
31 TIGR01742 SA_tandem_lipo Staph 31.5 28 0.0006 27.4 1.3 20 9-28 6-25 (255)
32 PLN03023 Expansin-like B1; Pro 31.3 54 0.0012 25.3 2.9 33 9-41 2-37 (247)
33 PF15102 TMEM154: TMEM154 prot 30.8 45 0.00098 24.2 2.3 8 37-44 88-95 (146)
34 TIGR00847 ccoS cytochrome oxid 30.7 55 0.0012 19.7 2.3 24 8-35 8-31 (51)
35 TIGR03511 GldH_lipo gliding mo 30.5 53 0.0012 23.4 2.6 24 18-41 11-35 (156)
36 TIGR01180 aman2_put alpha-1,2- 29.4 45 0.00097 28.2 2.3 20 9-28 6-25 (750)
37 PRK11023 outer membrane lipopr 29.3 41 0.00088 24.1 1.8 12 17-28 9-20 (191)
38 PRK02958 tatA twin arginine tr 29.1 74 0.0016 20.5 2.8 15 13-27 9-23 (73)
39 PRK04561 tatA twin arginine tr 28.8 76 0.0016 20.8 2.9 15 13-27 9-23 (75)
40 PRK03554 tatA twin arginine tr 28.7 74 0.0016 21.5 2.8 15 13-27 9-23 (89)
41 PF03597 CcoS: Cytochrome oxid 28.6 65 0.0014 18.8 2.3 24 8-35 7-30 (45)
42 PRK04598 tatA twin arginine tr 26.6 86 0.0019 20.6 2.8 15 13-27 9-23 (81)
43 PF06491 Disulph_isomer: Disul 26.4 24 0.00052 25.5 0.2 8 59-66 91-98 (136)
44 PF12911 OppC_N: N-terminal TM 26.3 62 0.0013 18.2 1.9 10 9-18 16-25 (56)
45 PRK12799 motB flagellar motor 26.2 62 0.0013 26.8 2.5 22 10-31 34-55 (421)
46 COG3317 NlpB Uncharacterized l 25.9 1.4E+02 0.0029 24.5 4.4 53 12-65 5-58 (342)
47 PRK05996 motB flagellar motor 25.5 64 0.0014 26.9 2.5 22 10-31 39-60 (423)
48 PF14054 DUF4249: Domain of un 25.5 35 0.00076 24.6 0.9 12 16-27 2-13 (298)
49 TIGR01732 tiny_TM_bacill conse 25.4 82 0.0018 17.0 2.1 12 10-21 8-19 (26)
50 PF11810 DUF3332: Domain of un 24.8 73 0.0016 23.3 2.5 20 12-31 5-24 (176)
51 COG3197 FixS Uncharacterized p 24.7 83 0.0018 19.8 2.4 19 8-26 8-26 (58)
52 PRK11627 hypothetical protein; 24.4 70 0.0015 23.5 2.3 21 19-41 10-30 (192)
53 TIGR02898 spore_YhcN_YlaJ spor 23.9 41 0.0009 24.2 1.0 16 16-31 4-19 (158)
54 PF08693 SKG6: Transmembrane a 23.3 57 0.0012 19.0 1.4 14 9-22 20-33 (40)
55 PF13623 SurA_N_2: SurA N-term 22.9 80 0.0017 22.1 2.3 26 2-27 2-27 (145)
56 PRK00720 tatA twin arginine tr 22.8 1E+02 0.0022 20.2 2.6 11 17-27 13-23 (78)
57 PRK01833 tatA twin arginine tr 21.5 1.3E+02 0.0027 19.5 2.8 15 13-27 9-23 (74)
58 PRK03625 tatE twin arginine tr 20.7 1.3E+02 0.0028 19.1 2.7 15 13-27 9-23 (67)
59 PF04507 DUF576: Protein of un 20.1 35 0.00075 27.0 0.0 18 12-29 8-25 (257)
No 1
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=92.05 E-value=0.094 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHhcccccccc
Q 048295 8 VPLMILLLWFIFIFITISHCHGSRS 32 (80)
Q Consensus 8 ~~~~~~lllllL~l~~~~~C~gaR~ 32 (80)
..|.+++|++|+++|++..|...|-
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777888876663
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=82.57 E-value=1.4 Score=29.30 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHhccccccc
Q 048295 9 PLMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C~gaR 31 (80)
.+.+|.|+|.++|+ +++=.++|
T Consensus 5 ~~llL~l~LA~lLl-isSevaa~ 26 (95)
T PF07172_consen 5 AFLLLGLLLAALLL-ISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHH-HHhhhhhH
Confidence 34333344444444 44444444
No 3
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=71.92 E-value=2.9 Score=30.08 Aligned_cols=17 Identities=6% Similarity=0.530 Sum_probs=10.5
Q ss_pred HHHHHHHhccccccccc
Q 048295 17 FIFIFITISHCHGSRST 33 (80)
Q Consensus 17 llL~l~~~~~C~gaR~~ 33 (80)
++++++++.+|+.....
T Consensus 6 ~l~l~lll~~C~~~~~~ 22 (216)
T PF11153_consen 6 LLLLLLLLTGCSTNPNE 22 (216)
T ss_pred HHHHHHHHHhhcCCCcc
Confidence 33355568889866543
No 4
>PF15240 Pro-rich: Proline-rich
Probab=66.53 E-value=3.3 Score=30.85 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhccccccc
Q 048295 12 ILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 12 ~~lllllL~l~~~~~C~gaR 31 (80)
||||||-++||++||-..+.
T Consensus 1 MLlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTD 20 (179)
T ss_pred ChhHHHHHHHHHhhhccccc
Confidence 67777878888888876555
No 5
>PF15284 PAGK: Phage-encoded virulence factor
Probab=60.64 E-value=14 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.8
Q ss_pred CCcccccCCCCCCCCC
Q 048295 47 TGHFLGFLPRHFPIPS 62 (80)
Q Consensus 47 ~~~f~gfLPkg~piPP 62 (80)
..++=..+|-|+++||
T Consensus 39 ~P~wC~lwP~g~~iP~ 54 (61)
T PF15284_consen 39 KPVWCDLWPAGIPIPE 54 (61)
T ss_pred CChHHhcCCCCCCCCc
Confidence 3447778899999997
No 6
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=59.58 E-value=8.7 Score=23.11 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++++|+.||++++..+.-+..+
T Consensus 24 lmTLLl~fFVlL~s~s~~d~~k 45 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMSSVDKEK 45 (58)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 5678888888888887766544
No 7
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=51.83 E-value=14 Score=19.58 Aligned_cols=16 Identities=13% Similarity=0.515 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcccc
Q 048295 13 LLLWFIFIFITISHCH 28 (80)
Q Consensus 13 ~lllllL~l~~~~~C~ 28 (80)
=+++.+++++.+++|.
T Consensus 9 kil~~l~a~~~LagCs 24 (25)
T PF08139_consen 9 KILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3456666777788885
No 8
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=50.44 E-value=16 Score=22.18 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcccccccc
Q 048295 13 LLLWFIFIFITISHCHGSRS 32 (80)
Q Consensus 13 ~lllllL~l~~~~~C~gaR~ 32 (80)
+++.+++..+.++.|+-.++
T Consensus 8 ~i~~~l~~~~~l~~CnTv~G 27 (48)
T PRK10081 8 AIFSVLVLSTVLTACNTTRG 27 (48)
T ss_pred HHHHHHHHHHHHhhhhhhhh
Confidence 33444455556899986663
No 9
>COG5510 Predicted small secreted protein [Function unknown]
Probab=49.85 E-value=16 Score=21.86 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcccccccc
Q 048295 12 ILLLWFIFIFITISHCHGSRS 32 (80)
Q Consensus 12 ~~lllllL~l~~~~~C~gaR~ 32 (80)
.+++++++.-+++..|+-.|+
T Consensus 7 l~i~~vll~s~llaaCNT~rG 27 (44)
T COG5510 7 LLIALVLLASTLLAACNTMRG 27 (44)
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 445555666777899988774
No 10
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=47.33 E-value=17 Score=28.27 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
+|.+|++||++||.++.-+...
T Consensus 24 lmTLLm~FFVlL~S~S~~d~~K 45 (302)
T PRK08944 24 LMSLLMCFFVLLLSFSEMDVLK 45 (302)
T ss_pred HHHHHHHHHHHHHHHhhcCHHH
Confidence 6788999999999999887665
No 11
>PLN03207 stomagen; Provisional
Probab=46.90 E-value=38 Score=23.81 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=11.9
Q ss_pred HHHHHhccccccccccccc
Q 048295 19 FIFITISHCHGSRSTNVFN 37 (80)
Q Consensus 19 L~l~~~~~C~gaR~~~~f~ 37 (80)
.+|+..--|+|+|+.....
T Consensus 21 ~llla~~v~qgsr~~~~~~ 39 (113)
T PLN03207 21 FLLLGAYVIQGSRNQSILP 39 (113)
T ss_pred HHHHHHHHHhccccccccC
Confidence 3344445689999776643
No 12
>PRK14758 hypothetical protein; Provisional
Probab=46.52 E-value=20 Score=19.57 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=13.9
Q ss_pred ccchHHHHHHHHHHHHHHh
Q 048295 6 RRVPLMILLLWFIFIFITI 24 (80)
Q Consensus 6 ~r~~~~~~lllllL~l~~~ 24 (80)
+|+++-++|+++++.-++.
T Consensus 3 ~RYrFEliLivlIlCalia 21 (27)
T PRK14758 3 GRYRFEFILIILILCALIA 21 (27)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5888888888777765543
No 13
>PRK06742 flagellar motor protein MotS; Reviewed
Probab=46.11 E-value=16 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSRS 32 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR~ 32 (80)
++.+||.||++|+..+.-+..+-
T Consensus 19 m~TLLL~FFVlL~s~S~vd~~k~ 41 (225)
T PRK06742 19 LTMLLLTFFVLLVATSKQDAVKL 41 (225)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHH
Confidence 56788889999998888877663
No 14
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=44.40 E-value=17 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
+|.+||.||++|+..+.-+...
T Consensus 23 l~TLLL~FFVlL~smS~vd~~K 44 (257)
T PRK08457 23 FLSLLLALFIALYAISAVNKAK 44 (257)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH
Confidence 5788889999999888887665
No 15
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=40.08 E-value=29 Score=18.44 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 048295 11 MILLLWFIFIFI 22 (80)
Q Consensus 11 ~~~lllllL~l~ 22 (80)
.+++++++|++.
T Consensus 7 alivVLFILLiI 18 (24)
T PF09680_consen 7 ALIVVLFILLII 18 (24)
T ss_pred hhHHHHHHHHHH
Confidence 344444444433
No 16
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=39.50 E-value=28 Score=25.87 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+||.||++|+..+.-+..+
T Consensus 25 l~TLLL~FFVlL~smS~~d~~k 46 (252)
T PRK06667 25 MVTLLLCFFVMLFTTNDVDENV 46 (252)
T ss_pred HHHHHHHHHHHHHHhhhcCHHH
Confidence 5678888888888888887665
No 17
>PRK13684 Ycf48-like protein; Provisional
Probab=39.18 E-value=22 Score=27.20 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhccccccc
Q 048295 12 ILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 12 ~~lllllL~l~~~~~C~gaR 31 (80)
.-|+|+++++++++.|..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (334)
T PRK13684 9 KNLLLLLALLLVLSGCSTTR 28 (334)
T ss_pred HHHHHHHHHHhhccccCCCC
Confidence 34566667777899998876
No 18
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=39.10 E-value=30 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+|+.||++|+.++.-+..+
T Consensus 22 ~~TlLlafFvlL~s~s~~d~~k 43 (230)
T PRK06925 22 LITLILVFFILLFSMSQIDAQK 43 (230)
T ss_pred HHHHHHHHHHHHHHhhcCCHHH
Confidence 5778888888898888877554
No 19
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=39.01 E-value=30 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+|+.||++|+.++.-+..+
T Consensus 26 ~vTlLlaFFvlL~s~s~~d~~k 47 (259)
T PRK07734 26 LLTLLLALFIVLFAMSSIDAAK 47 (259)
T ss_pred HHHHHHHHHHHHHHHhhCCHHH
Confidence 5678888888888888876554
No 20
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=38.59 E-value=16 Score=21.64 Aligned_cols=19 Identities=42% Similarity=0.688 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhccccccc
Q 048295 13 LLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 13 ~lllllL~l~~~~~C~gaR 31 (80)
++|+|||=++.++-|.--|
T Consensus 7 llLlfflG~ISlSlCeeEr 25 (46)
T PF03032_consen 7 LLLLFFLGTISLSLCEEER 25 (46)
T ss_pred HHHHHHHHHcccchHHHhc
Confidence 4566667777889997555
No 21
>PRK09810 entericidin A; Provisional
Probab=38.01 E-value=29 Score=20.26 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=9.9
Q ss_pred HHHHHHhcccccccc
Q 048295 18 IFIFITISHCHGSRS 32 (80)
Q Consensus 18 lL~l~~~~~C~gaR~ 32 (80)
++.++.++.|+-.++
T Consensus 10 ~~~~~~L~aCNTv~G 24 (41)
T PRK09810 10 LLASTLLTGCNTARG 24 (41)
T ss_pred HHHHHHHhhhhhccc
Confidence 344556899986663
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.62 E-value=30 Score=25.24 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 048295 10 LMILLLWFIFIFITISHCHGS 30 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~ga 30 (80)
+.++++.++++..++.||++-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (205)
T PRK06231 11 LLLLSFSFLIISLFLVSCTEN 31 (205)
T ss_pred HHHHHHHHHHHHHHHHHccCC
Confidence 444445566677788999865
No 23
>PRK06778 hypothetical protein; Validated
Probab=36.82 E-value=34 Score=26.39 Aligned_cols=22 Identities=5% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+|+.||++|+..+.-+...
T Consensus 29 ~~TLLLaFFVlL~smS~vd~~k 50 (289)
T PRK06778 29 FTLAMMALFMVLWIVNSVSKSE 50 (289)
T ss_pred HHHHHHHHHHHHHHhhcCCHHH
Confidence 5778888888999888876554
No 24
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=36.62 E-value=43 Score=22.60 Aligned_cols=14 Identities=0% Similarity=0.294 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhccc
Q 048295 14 LLWFIFIFITISHC 27 (80)
Q Consensus 14 lllllL~l~~~~~C 27 (80)
|++++++++++|.-
T Consensus 10 liIlvIvlllFG~~ 23 (92)
T PRK00442 10 IVILVVVVLVFGTK 23 (92)
T ss_pred HHHHHHHHHHhCcc
Confidence 33334445556654
No 25
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=35.66 E-value=36 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHhccccccc
Q 048295 9 PLMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C~gaR 31 (80)
..+.+++++++.+++++.|..+-
T Consensus 4 ~~~~~~~~~~l~~~f~~~~~~~~ 26 (211)
T COG2834 4 MMMKLLLALALLLLFLSACAQAG 26 (211)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhh
Confidence 44455666667777788886443
No 26
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=34.87 E-value=47 Score=27.94 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=11.3
Q ss_pred HHHHHHHHHhccccccc
Q 048295 15 LWFIFIFITISHCHGSR 31 (80)
Q Consensus 15 llllL~l~~~~~C~gaR 31 (80)
||+-+++|++++|++-.
T Consensus 28 ~lis~LifLCsSC~reK 44 (428)
T PF15347_consen 28 LLISFLIFLCSSCDREK 44 (428)
T ss_pred HHHHHHHHHhhcccccc
Confidence 33446677789997654
No 27
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=34.32 E-value=40 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+|+.||++|+.++.-+..+
T Consensus 24 ~mTLLlaFFVlL~smS~~d~~k 45 (281)
T PRK09038 24 FITLLFAFFVVMYAISSVNEGK 45 (281)
T ss_pred HHHHHHHHHHHHHHHhcCCHHH
Confidence 5678888888888888776554
No 28
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=33.06 E-value=16 Score=23.72 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=9.5
Q ss_pred HHHHHhccccccccccc
Q 048295 19 FIFITISHCHGSRSTNV 35 (80)
Q Consensus 19 L~l~~~~~C~gaR~~~~ 35 (80)
|+++++....|+|..-.
T Consensus 4 L~~~~~~~~~AARp~p~ 20 (81)
T PF06404_consen 4 LLCSSSTSAAAARPLPA 20 (81)
T ss_pred HHHHHhhHhhhcCCCCC
Confidence 33344455679995433
No 29
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=32.63 E-value=43 Score=26.34 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+|+.||++|+.++.-+..+
T Consensus 33 ~vTLLLaFFVlL~smS~vD~~k 54 (317)
T PRK09041 33 FMTAMMAFFLVMWLLSSSTPEQ 54 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCHHH
Confidence 5678888888888888876554
No 30
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=32.52 E-value=20 Score=27.22 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=10.1
Q ss_pred HHHHHHHHhccccccc
Q 048295 16 WFIFIFITISHCHGSR 31 (80)
Q Consensus 16 lllL~l~~~~~C~gaR 31 (80)
+++++++++++|...|
T Consensus 7 ~ll~~~~lLtGCwd~~ 22 (371)
T TIGR02887 7 LLLLALLLLTGCWDSR 22 (371)
T ss_pred HHHHHHHHHCCcCcHH
Confidence 3444555579997666
No 31
>TIGR01742 SA_tandem_lipo Staphylococcus tandem lipoproteins. Members of this family are predicted lipoproteins (mostly), found in Staphylococcus aureus in several different tandem clusters in pathogenicity islands. Members are also found, clustered, in Staphylococcus epidermidis.
Probab=31.46 E-value=28 Score=27.40 Aligned_cols=20 Identities=15% Similarity=0.354 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHhcccc
Q 048295 9 PLMILLLWFIFIFITISHCH 28 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C~ 28 (80)
++.+.+.+++|.+.++++|.
T Consensus 6 kl~l~i~~~il~I~~i~GC~ 25 (255)
T TIGR01742 6 KIALYISALILIISFVVGCG 25 (255)
T ss_pred HHHHHHHHHHHHheeeeccc
Confidence 45444555555555789996
No 32
>PLN03023 Expansin-like B1; Provisional
Probab=31.29 E-value=54 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHhccccccc---cccccccCCC
Q 048295 9 PLMILLLWFIFIFITISHCHGSR---STNVFNLTPN 41 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C~gaR---~~~~f~~~P~ 41 (80)
++.+++++|++++++.+.+.+.+ ...+|+..|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~~ 37 (247)
T PLN03023 2 PLSHYCCFLCVIVLLPLLCKSQDFTYSRATYYGSPD 37 (247)
T ss_pred CchhhHHHHHHHHHhhhhhhcCCcccceEEEeCCCC
Confidence 44455555555555444333332 4567887775
No 33
>PF15102 TMEM154: TMEM154 protein family
Probab=30.80 E-value=45 Score=24.18 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=3.5
Q ss_pred ccCCCCCC
Q 048295 37 NLTPNSPH 44 (80)
Q Consensus 37 ~~~P~~~~ 44 (80)
|..|.+++
T Consensus 88 K~~~ss~g 95 (146)
T PF15102_consen 88 KQEPSSQG 95 (146)
T ss_pred CCCCcccc
Confidence 33444444
No 34
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=30.66 E-value=55 Score=19.75 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHhccccccccccc
Q 048295 8 VPLMILLLWFIFIFITISHCHGSRSTNV 35 (80)
Q Consensus 8 ~~~~~~lllllL~l~~~~~C~gaR~~~~ 35 (80)
|++++++.++++..|++ |.|++|.
T Consensus 8 IpiSl~l~~~~l~~f~W----avk~GQf 31 (51)
T TIGR00847 8 IPISLLLGGVGLVAFLW----SLKSGQY 31 (51)
T ss_pred HHHHHHHHHHHHHHHHH----HHccCCC
Confidence 45556666666666655 4555554
No 35
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=30.50 E-value=53 Score=23.45 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHHHHHhccccccc-cccccccCCC
Q 048295 18 IFIFITISHCHGSR-STNVFNLTPN 41 (80)
Q Consensus 18 lL~l~~~~~C~gaR-~~~~f~~~P~ 41 (80)
+++.+++.+|+..+ -.-.++.-|.
T Consensus 11 ll~~~ll~sC~~~~~vy~~y~~~p~ 35 (156)
T TIGR03511 11 FLGACVLVSCTENTDVYHSYQSTPH 35 (156)
T ss_pred HHHHHHhcccCCCCeEEEEeeECCc
Confidence 34445677999888 4444444454
No 36
>TIGR01180 aman2_put alpha-1,2-mannosidase, putative. The identification of members of this family as putative alpha-1,2-mannosidases is based on an unpublished characterization of the aman2 gene in Bacillus sp. M-90 by Maruyama,Y., Nakajima,M. and Nakajima,T. Most members of this family appear to have signal sequences. Members from the dental pathogen Porphyromonas gingivalis have been described as immunoreactive with periodontitis patient serum.
Probab=29.37 E-value=45 Score=28.16 Aligned_cols=20 Identities=15% Similarity=0.531 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHhcccc
Q 048295 9 PLMILLLWFIFIFITISHCH 28 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C~ 28 (80)
+|.|.++.+++.+++++.|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (750)
T TIGR01180 6 PILYIVLIFAILCLFVGRAL 25 (750)
T ss_pred chHHHHHHHHHHHHHHhhhc
Confidence 67777776777777788884
No 37
>PRK11023 outer membrane lipoprotein; Provisional
Probab=29.32 E-value=41 Score=24.13 Aligned_cols=12 Identities=8% Similarity=0.373 Sum_probs=6.9
Q ss_pred HHHHHHHhcccc
Q 048295 17 FIFIFITISHCH 28 (80)
Q Consensus 17 llL~l~~~~~C~ 28 (80)
+++.++++++|.
T Consensus 9 ~l~~~~~l~gC~ 20 (191)
T PRK11023 9 VLLSALLLQGCV 20 (191)
T ss_pred HHHHHHHHhccH
Confidence 333445578895
No 38
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=29.06 E-value=74 Score=20.50 Aligned_cols=15 Identities=7% Similarity=0.310 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhccc
Q 048295 13 LLLWFIFIFITISHC 27 (80)
Q Consensus 13 ~lllllL~l~~~~~C 27 (80)
++++++++++++|.-
T Consensus 9 lliIl~IvlllFG~k 23 (73)
T PRK02958 9 WLIVLVIVVLVFGTK 23 (73)
T ss_pred HHHHHHHHHHHhCcc
Confidence 344444555556654
No 39
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=28.84 E-value=76 Score=20.79 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhccc
Q 048295 13 LLLWFIFIFITISHC 27 (80)
Q Consensus 13 ~lllllL~l~~~~~C 27 (80)
++++++++++++|.-
T Consensus 9 llIIlvIvlLlFG~~ 23 (75)
T PRK04561 9 WLVVLVIVLLVFGTK 23 (75)
T ss_pred HHHHHHHHHHHhCCc
Confidence 344444555556654
No 40
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=28.67 E-value=74 Score=21.47 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhccc
Q 048295 13 LLLWFIFIFITISHC 27 (80)
Q Consensus 13 ~lllllL~l~~~~~C 27 (80)
++++++++++++|.-
T Consensus 9 LlIIlvIvLLlFG~k 23 (89)
T PRK03554 9 LLIIAVIVVLLFGTK 23 (89)
T ss_pred HHHHHHHHHHHhCcc
Confidence 444444555556654
No 41
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=28.62 E-value=65 Score=18.83 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHhccccccccccc
Q 048295 8 VPLMILLLWFIFIFITISHCHGSRSTNV 35 (80)
Q Consensus 8 ~~~~~~lllllL~l~~~~~C~gaR~~~~ 35 (80)
+++++++.++++..|++ |.|++|.
T Consensus 7 ip~sl~l~~~~l~~f~W----avk~GQf 30 (45)
T PF03597_consen 7 IPVSLILGLIALAAFLW----AVKSGQF 30 (45)
T ss_pred HHHHHHHHHHHHHHHHH----HHccCCC
Confidence 35555555555666655 4555553
No 42
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=26.56 E-value=86 Score=20.60 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhccc
Q 048295 13 LLLWFIFIFITISHC 27 (80)
Q Consensus 13 ~lllllL~l~~~~~C 27 (80)
++++++++++++|.-
T Consensus 9 lliIlvivlllFG~k 23 (81)
T PRK04598 9 LLIIAVIVVLLFGTK 23 (81)
T ss_pred HHHHHHHHHHHhCcc
Confidence 444444555556644
No 43
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=26.35 E-value=24 Score=25.49 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 048295 59 PIPSSGPS 66 (80)
Q Consensus 59 piPPSgPS 66 (80)
+.|||.||
T Consensus 91 ~~pPSSPS 98 (136)
T PF06491_consen 91 PYPPSSPS 98 (136)
T ss_dssp TS---SSE
T ss_pred CCCCCCch
Confidence 57999998
No 44
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=26.35 E-value=62 Score=18.21 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 048295 9 PLMILLLWFI 18 (80)
Q Consensus 9 ~~~~~lllll 18 (80)
++.++-++++
T Consensus 16 k~a~~gl~il 25 (56)
T PF12911_consen 16 KLAVIGLIIL 25 (56)
T ss_pred chHHHHHHHH
Confidence 4444444333
No 45
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=26.19 E-value=62 Score=26.82 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
++.+++.|||+|++++.-+...
T Consensus 34 fvTlLMAFFlLLwsmSsvd~~k 55 (421)
T PRK12799 34 FMTAMMAFFLVMWLLAVSSPQE 55 (421)
T ss_pred HHHHHHHHHHHHHHhhcCCHHH
Confidence 5678888888888888876443
No 46
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.87 E-value=1.4e+02 Score=24.55 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcccc-ccccccccccCCCCCCCCCCcccccCCCCCCCCCCCC
Q 048295 12 ILLLWFIFIFITISHCH-GSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGP 65 (80)
Q Consensus 12 ~~lllllL~l~~~~~C~-gaR~~~~f~~~P~~~~~~~~~f~gfLPkg~piPPSgP 65 (80)
.-+++.++++..++.|. ..+..+.++-.=++.. +..++-=-+|.||.-|.-.|
T Consensus 5 ~~~v~~al~v~~LaaCSs~~~~~~q~~d~qsyl~-A~~l~~l~~P~Gv~lp~~d~ 58 (342)
T COG3317 5 AKLVLGALLVLLLAACSSDSEYKRQVSDDQSYLE-ARPLPPLEAPAGVILPQQDG 58 (342)
T ss_pred HHHHHHHHHHHHHhhccCCcccccccccchhhhc-ccCCCCccCCCCcccCCCCC
Confidence 44555556666677776 7776666544222211 24455555677766565444
No 47
>PRK05996 motB flagellar motor protein MotB; Validated
Probab=25.47 E-value=64 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 048295 10 LMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 10 ~~~~lllllL~l~~~~~C~gaR 31 (80)
+|.+|+.|||+|++++.-+...
T Consensus 39 ~mt~lm~fFl~l~~~~~~~~~~ 60 (423)
T PRK05996 39 FMTAMMAFFLVMWLINAANEET 60 (423)
T ss_pred HHHHHHHHHHHHHHHhccCHHH
Confidence 6788888889999888887544
No 48
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=25.45 E-value=35 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.797 Sum_probs=8.1
Q ss_pred HHHHHHHHhccc
Q 048295 16 WFIFIFITISHC 27 (80)
Q Consensus 16 lllL~l~~~~~C 27 (80)
+++++++++.+|
T Consensus 2 ~l~ll~l~l~sC 13 (298)
T PF14054_consen 2 LLLLLLLLLSSC 13 (298)
T ss_pred hHHHHHHHHhcc
Confidence 455566667888
No 49
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=25.43 E-value=82 Score=17.01 Aligned_cols=12 Identities=17% Similarity=0.714 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 048295 10 LMILLLWFIFIF 21 (80)
Q Consensus 10 ~~~~lllllL~l 21 (80)
+.+++++++|++
T Consensus 8 f~livVLFILLI 19 (26)
T TIGR01732 8 FALIVVLFILLV 19 (26)
T ss_pred hHHHHHHHHHHH
Confidence 334444444333
No 50
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=24.75 E-value=73 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhccccccc
Q 048295 12 ILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 12 ~~lllllL~l~~~~~C~gaR 31 (80)
+.++.+++....+++|-|+=
T Consensus 5 ~~~~~~~~~~~~lsgC~Gsf 24 (176)
T PF11810_consen 5 KAAVALLAGSLSLSGCMGSF 24 (176)
T ss_pred HHHHHHHHHHHHhccccccH
Confidence 44444555566789998765
No 51
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=24.67 E-value=83 Score=19.78 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHhcc
Q 048295 8 VPLMILLLWFIFIFITISH 26 (80)
Q Consensus 8 ~~~~~~lllllL~l~~~~~ 26 (80)
+++++++.++.+..|+++-
T Consensus 8 ipvsi~l~~v~l~~flWav 26 (58)
T COG3197 8 IPVSILLGAVGLGAFLWAV 26 (58)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5777888888888887764
No 52
>PRK11627 hypothetical protein; Provisional
Probab=24.42 E-value=70 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.542 Sum_probs=13.6
Q ss_pred HHHHHhccccccccccccccCCC
Q 048295 19 FIFITISHCHGSRSTNVFNLTPN 41 (80)
Q Consensus 19 L~l~~~~~C~gaR~~~~f~~~P~ 41 (80)
+.++++.+|.+. .++....|+
T Consensus 10 ~a~~~L~gCA~~--p~~l~l~P~ 30 (192)
T PRK11627 10 VALFMLAGCATP--SNTLEVSPK 30 (192)
T ss_pred HHHHHHHhhcCC--CCEEEeCCc
Confidence 334557889866 366666776
No 53
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=23.92 E-value=41 Score=24.15 Aligned_cols=16 Identities=6% Similarity=0.598 Sum_probs=8.7
Q ss_pred HHHHHHHHhccccccc
Q 048295 16 WFIFIFITISHCHGSR 31 (80)
Q Consensus 16 lllL~l~~~~~C~gaR 31 (80)
+++++++++++|.-+.
T Consensus 4 ~~~~~~~~l~gC~~~~ 19 (158)
T TIGR02898 4 IILLLLLVLTGCTNAQ 19 (158)
T ss_pred HHHHHHHHHhhccccc
Confidence 3344444568886444
No 54
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.34 E-value=57 Score=18.99 Aligned_cols=14 Identities=7% Similarity=0.334 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHH
Q 048295 9 PLMILLLWFIFIFI 22 (80)
Q Consensus 9 ~~~~~lllllL~l~ 22 (80)
|+..+.++|+++|+
T Consensus 20 PV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 20 PVGVIIIVLGAFLF 33 (40)
T ss_pred chHHHHHHHHHHhh
Confidence 44444555544544
No 55
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.95 E-value=80 Score=22.06 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.8
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccc
Q 048295 2 GNSCRRVPLMILLLWFIFIFITISHC 27 (80)
Q Consensus 2 g~~~~r~~~~~~lllllL~l~~~~~C 27 (80)
++.+.|-.+.++++-+.|+.|+++-+
T Consensus 2 ~kIR~r~~lLi~vIglAL~aFIv~d~ 27 (145)
T PF13623_consen 2 QKIRQRGGLLIIVIGLALFAFIVGDF 27 (145)
T ss_pred hhHhhcchHHHHHHHHHHHHHHHHHH
Confidence 55666767777777777777777543
No 56
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=22.81 E-value=1e+02 Score=20.21 Aligned_cols=11 Identities=0% Similarity=0.241 Sum_probs=4.8
Q ss_pred HHHHHHHhccc
Q 048295 17 FIFIFITISHC 27 (80)
Q Consensus 17 llL~l~~~~~C 27 (80)
++++++++|.-
T Consensus 13 lvIvlllFG~k 23 (78)
T PRK00720 13 LAVVLLLFGRG 23 (78)
T ss_pred HHHHHHHhCcc
Confidence 33444445643
No 57
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=21.49 E-value=1.3e+02 Score=19.47 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhccc
Q 048295 13 LLLWFIFIFITISHC 27 (80)
Q Consensus 13 ~lllllL~l~~~~~C 27 (80)
++++++++++++|.-
T Consensus 9 lliIl~i~lllFG~k 23 (74)
T PRK01833 9 LLIIVAIIVLLFGTK 23 (74)
T ss_pred HHHHHHHHHHHhCcc
Confidence 344444455556654
No 58
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.74 E-value=1.3e+02 Score=19.05 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhccc
Q 048295 13 LLLWFIFIFITISHC 27 (80)
Q Consensus 13 ~lllllL~l~~~~~C 27 (80)
+++.++++++++|.-
T Consensus 9 lliIlvI~lllFGpk 23 (67)
T PRK03625 9 LLVVAALVVLLFGTK 23 (67)
T ss_pred HHHHHHHHHHHcCcc
Confidence 444444555556654
No 59
>PF04507 DUF576: Protein of unknown function, DUF576; InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins. Members of this family are mostly predicted lipoproteins, found in Staphylococcus aureus but are also found clustered in Staphylococcus epidermidis.; PDB: 4EG9_A 4EGD_B.
Probab=20.10 E-value=35 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccccc
Q 048295 12 ILLLWFIFIFITISHCHG 29 (80)
Q Consensus 12 ~~lllllL~l~~~~~C~g 29 (80)
.+++.++++++++++|..
T Consensus 8 ~L~Is~liLii~I~GCg~ 25 (257)
T PF04507_consen 8 ALYISLLILIIFIGGCGM 25 (257)
T ss_dssp ------------------
T ss_pred hHHHHHHhHheeeeeccC
Confidence 444555556666788964
Done!