Query 048295
Match_columns 80
No_of_seqs 41 out of 43
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhk_A UPF0403 protein YPHP; d 30.6 14 0.0005 25.9 0.7 8 59-66 102-109 (147)
2 1wh6_A CUT-like 2, homeobox pr 29.6 20 0.0007 23.2 1.3 9 59-67 92-100 (101)
3 1wji_A Tudor domain containing 24.5 29 0.001 20.3 1.2 17 51-67 46-62 (63)
4 1oah_A Cytochrome C nitrite re 23.9 16 0.00056 29.2 0.0 23 9-31 6-28 (519)
5 3a7n_A UDG, uracil-DNA glycosy 23.2 28 0.00095 25.7 1.1 20 44-63 85-104 (238)
6 2kog_A Vesicle-associated memb 19.0 58 0.002 21.2 1.9 9 19-27 110-118 (119)
7 3hd7_A Vesicle-associated memb 18.9 92 0.0032 19.1 2.7 12 16-27 79-90 (91)
8 3u1s_H FAB PGT145 heavy chain; 16.6 30 0.001 23.2 0.1 6 9-14 3-8 (267)
9 4ad1_A Glycosyl hydrolase fami 16.5 30 0.001 26.3 0.0 20 13-32 2-21 (380)
10 4edp_A ABC transporter, substr 16.0 31 0.0011 23.1 0.0 13 18-30 16-28 (351)
No 1
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=30.59 E-value=14 Score=25.91 Aligned_cols=8 Identities=38% Similarity=0.447 Sum_probs=7.2
Q ss_pred CCCCCCCC
Q 048295 59 PIPSSGPS 66 (80)
Q Consensus 59 piPPSgPS 66 (80)
+.|||.||
T Consensus 102 ~~pPSSPS 109 (147)
T 3fhk_A 102 GAAPSSPS 109 (147)
T ss_dssp TCCCCSSE
T ss_pred CCCCCCch
Confidence 67999998
No 2
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=29.60 E-value=20 Score=23.22 Aligned_cols=9 Identities=67% Similarity=0.888 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 048295 59 PIPSSGPSR 67 (80)
Q Consensus 59 piPPSgPSr 67 (80)
+-||||||-
T Consensus 92 ~~~~~~~~~ 100 (101)
T 1wh6_A 92 PGASSGPSS 100 (101)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 679999984
No 3
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.47 E-value=29 Score=20.26 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.1
Q ss_pred cccCCCCCCCCCCCCCC
Q 048295 51 LGFLPRHFPIPSSGPSR 67 (80)
Q Consensus 51 ~gfLPkg~piPPSgPSr 67 (80)
-+..|+....||+|||-
T Consensus 46 ~~~~~~~~~~p~~~~~~ 62 (63)
T 1wji_A 46 TSNKQKPVMGPPSGPSS 62 (63)
T ss_dssp HHSSCCCCCSSCCCSSC
T ss_pred HCCCCcccCCCCCCCCC
Confidence 34456666789999984
No 4
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=23.92 E-value=16 Score=29.20 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhccccccc
Q 048295 9 PLMILLLWFIFIFITISHCHGSR 31 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C~gaR 31 (80)
.+++++|+++++++++++|...-
T Consensus 6 ~~~~~~l~~l~~~~~~~GC~~~~ 28 (519)
T 1oah_A 6 VTTALALATLLGVALLSGCQDVS 28 (519)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHhhhcCCCc
Confidence 44455555556677778887543
No 5
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=23.20 E-value=28 Score=25.67 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCCCcccccCCCCCCCCCC
Q 048295 44 HQQTGHFLGFLPRHFPIPSS 63 (80)
Q Consensus 44 ~~~~~~f~gfLPkg~piPPS 63 (80)
+++.|.-|.-.|+|+++|||
T Consensus 85 gqA~GLaFSV~~~~v~~PpS 104 (238)
T 3a7n_A 85 GHAVGLSFSVAPDVRPWPRS 104 (238)
T ss_dssp TTCCSSTTCCCTTCSSCCHH
T ss_pred CCeeeEEEEecCCCCCccHH
Confidence 45678888876889999987
No 6
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=18.99 E-value=58 Score=21.20 Aligned_cols=9 Identities=22% Similarity=0.430 Sum_probs=3.9
Q ss_pred HHHHHhccc
Q 048295 19 FIFITISHC 27 (80)
Q Consensus 19 L~l~~~~~C 27 (80)
+++.++..|
T Consensus 110 i~iIi~~~c 118 (119)
T 2kog_A 110 LIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhee
Confidence 333444445
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=18.90 E-value=92 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=5.9
Q ss_pred HHHHHHHHhccc
Q 048295 16 WFIFIFITISHC 27 (80)
Q Consensus 16 lllL~l~~~~~C 27 (80)
++++++.++..|
T Consensus 79 ~~il~ii~~~~~ 90 (91)
T 3hd7_A 79 AIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh
Confidence 333444555555
No 8
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=16.58 E-value=30 Score=23.18 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHH
Q 048295 9 PLMILL 14 (80)
Q Consensus 9 ~~~~~l 14 (80)
++|..+
T Consensus 3 ~~M~~~ 8 (267)
T 3u1s_H 3 STMDWI 8 (267)
T ss_dssp ------
T ss_pred chhhHH
Confidence 334333
No 9
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=16.45 E-value=30 Score=26.30 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccc
Q 048295 13 LLLWFIFIFITISHCHGSRS 32 (80)
Q Consensus 13 ~lllllL~l~~~~~C~gaR~ 32 (80)
.+++++|.|++++.|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (380)
T 4ad1_A 2 MIFFLSLSLESCSKEDDNNP 21 (380)
T ss_dssp --------------------
T ss_pred eeehhhHHHHHhccccCCCc
Confidence 45666678888899987764
No 10
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=16.04 E-value=31 Score=23.12 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHhcccccc
Q 048295 18 IFIFITISHCHGS 30 (80)
Q Consensus 18 lL~l~~~~~C~ga 30 (80)
+++.++++.|.++
T Consensus 16 ~~~~~~lagC~~~ 28 (351)
T 4edp_A 16 LVLGTSLVGCGKT 28 (351)
T ss_dssp -------------
T ss_pred HHHHHHhheeCCC
Confidence 3344456778643
Done!