Query 048295
Match_columns 80
No_of_seqs 41 out of 43
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 14:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048295.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048295hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wh4a_ a.77.1.2 (A:) Interleu 21.5 15 0.0011 22.4 1.1 9 59-67 118-126 (127)
2 d1qled_ f.23.8.1 (D:) Bacteria 14.8 63 0.0046 17.0 2.5 13 11-23 28-40 (43)
3 d1m56d_ f.23.8.1 (D:) Bacteria 13.2 79 0.0057 16.5 2.6 12 12-23 28-39 (42)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 12.3 33 0.0024 18.6 0.8 19 9-27 7-25 (57)
5 d1laue_ c.18.1.1 (E:) Uracil-D 7.5 64 0.0047 21.6 1.0 20 43-63 77-96 (228)
6 d1v31a_ a.42.1.1 (A:) Hypothet 7.3 70 0.0051 18.3 1.0 8 59-66 84-91 (93)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 7.2 1.7E+02 0.012 14.8 2.5 12 11-22 9-20 (37)
8 d2hxma1 c.18.1.1 (A:82-304) Ur 7.1 70 0.0051 21.3 1.0 19 44-63 70-88 (223)
9 d3euga_ c.18.1.1 (A:) Uracil-D 6.9 72 0.0053 21.3 1.0 19 44-63 66-84 (225)
10 d1wjia_ a.5.2.1 (A:) Tudor dom 6.8 73 0.0053 17.0 0.8 8 59-66 54-61 (63)
No 1
>d1wh4a_ a.77.1.2 (A:) Interleukin-1 receptor-associated kinase 4, IRAK4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.50 E-value=15 Score=22.36 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 048295 59 PIPSSGPSR 67 (80)
Q Consensus 59 piPPSgPSr 67 (80)
++|||||+-
T Consensus 118 ~~P~s~p~~ 126 (127)
T d1wh4a_ 118 SLPPSGPSS 126 (127)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 789999973
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=14.84 E-value=63 Score=17.03 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 048295 11 MILLLWFIFIFIT 23 (80)
Q Consensus 11 ~~~lllllL~l~~ 23 (80)
.++++.+++|+.+
T Consensus 28 ~i~~i~~liflAi 40 (43)
T d1qled_ 28 SILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.23 E-value=79 Score=16.54 Aligned_cols=12 Identities=0% Similarity=0.232 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 048295 12 ILLLWFIFIFIT 23 (80)
Q Consensus 12 ~~lllllL~l~~ 23 (80)
++++.+++|+.+
T Consensus 28 i~~i~~liflAi 39 (42)
T d1m56d_ 28 VVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.25 E-value=33 Score=18.61 Aligned_cols=19 Identities=5% Similarity=0.037 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHhccc
Q 048295 9 PLMILLLWFIFIFITISHC 27 (80)
Q Consensus 9 ~~~~~lllllL~l~~~~~C 27 (80)
-+..+++++++++++.+.+
T Consensus 7 ~~~~~~~~~~i~i~~~s~~ 25 (57)
T d2h8pc1 7 AAGAATVLLVIVLLAGSYL 25 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 5
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=7.46 E-value=64 Score=21.56 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=14.0
Q ss_pred CCCCCCcccccCCCCCCCCCC
Q 048295 43 PHQQTGHFLGFLPRHFPIPSS 63 (80)
Q Consensus 43 ~~~~~~~f~gfLPkg~piPPS 63 (80)
.+++.|.-|+- +++.++|||
T Consensus 77 ~~~A~GLaFsv-~~~~~~ppS 96 (228)
T d1laue_ 77 PGQAHGLAFSV-RANVPPPPS 96 (228)
T ss_dssp TTTCCSSSSCC-CTTSCCCHH
T ss_pred cceeeeeeccc-CCCccchhH
Confidence 34567777765 777788875
No 6
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.32 E-value=70 Score=18.29 Aligned_cols=8 Identities=75% Similarity=1.315 Sum_probs=5.9
Q ss_pred CCCCCCCC
Q 048295 59 PIPSSGPS 66 (80)
Q Consensus 59 piPPSgPS 66 (80)
|.+||+||
T Consensus 84 p~~P~~~~ 91 (93)
T d1v31a_ 84 PPPPSGPS 91 (93)
T ss_dssp CCCCSSCC
T ss_pred CCCCCCCC
Confidence 56788877
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=7.18 E-value=1.7e+02 Score=14.76 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 048295 11 MILLLWFIFIFI 22 (80)
Q Consensus 11 ~~~lllllL~l~ 22 (80)
.+.++|+|++.+
T Consensus 9 ~ly~Fw~FFagL 20 (37)
T d1eysh2 9 TIWAFWLFFFGL 20 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445444433
No 8
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.15 E-value=70 Score=21.35 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=13.8
Q ss_pred CCCCCcccccCCCCCCCCCC
Q 048295 44 HQQTGHFLGFLPRHFPIPSS 63 (80)
Q Consensus 44 ~~~~~~f~gfLPkg~piPPS 63 (80)
+++.|.-|+ .+++.++|||
T Consensus 70 ~~A~GlaFS-v~~~~~~ppS 88 (223)
T d2hxma1 70 NQAHGLCFS-VQRPVPPPPS 88 (223)
T ss_dssp TTCCSSTTC-CCTTSCCCHH
T ss_pred Ccceeeeee-ccCCcccCcc
Confidence 445677776 5888889886
No 9
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=6.92 E-value=72 Score=21.33 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=13.4
Q ss_pred CCCCCcccccCCCCCCCCCC
Q 048295 44 HQQTGHFLGFLPRHFPIPSS 63 (80)
Q Consensus 44 ~~~~~~f~gfLPkg~piPPS 63 (80)
++|.|.-|. .|++.++|||
T Consensus 66 ~~A~GLaFs-v~~~~~~PpS 84 (225)
T d3euga_ 66 GQAHGLAFS-VRPGIAIPPS 84 (225)
T ss_dssp TTCSSSTTC-CCTTSCCCHH
T ss_pred cceeeeeee-ccCCCCCChh
Confidence 445676665 4788889987
No 10
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.77 E-value=73 Score=16.96 Aligned_cols=8 Identities=63% Similarity=0.820 Sum_probs=5.7
Q ss_pred CCCCCCCC
Q 048295 59 PIPSSGPS 66 (80)
Q Consensus 59 piPPSgPS 66 (80)
.-||+|||
T Consensus 54 ~~p~~~ps 61 (63)
T d1wjia_ 54 MGPPSGPS 61 (63)
T ss_dssp CSSCCCSS
T ss_pred cCCCCCCC
Confidence 45778886
Done!