Query 048296
Match_columns 167
No_of_seqs 112 out of 1388
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hbx_A SRF, serum response fac 100.0 7.6E-37 2.6E-41 203.2 -0.6 73 3-75 4-80 (92)
2 1egw_A MADS box transcription 100.0 1.1E-36 3.7E-41 197.1 -0.7 69 10-78 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.5E-36 8.6E-41 203.2 -0.5 76 2-77 9-88 (100)
4 1k6o_B SRF, serum response fac 100.0 3E-36 1E-40 204.1 -0.4 72 2-73 2-77 (103)
5 3p57_A Myocyte-specific enhanc 100.0 3.4E-36 1.2E-40 199.3 -1.2 69 10-78 1-73 (90)
6 3nrf_A APAG protein; structura 73.7 1.4 4.9E-05 29.2 1.6 44 19-67 21-64 (106)
7 1p9i_A Cortexillin I/GCN4 hybr 72.9 5.2 0.00018 19.7 3.1 26 133-158 2-27 (31)
8 1g6u_A Domain swapped dimer; d 41.2 42 0.0014 18.0 4.3 23 128-150 15-37 (48)
9 1zav_U 50S ribosomal protein L 37.7 28 0.00096 17.5 2.4 22 124-145 7-28 (30)
10 3g3z_A NMB1585, transcriptiona 36.4 64 0.0022 21.1 4.9 37 119-155 106-142 (145)
11 2zvv_Y Cyclin-dependent kinase 35.8 14 0.00047 17.7 0.9 12 23-34 15-26 (26)
12 2ky6_A Mediator of RNA polymer 35.2 23 0.00078 25.3 2.4 20 44-63 116-135 (166)
13 3tso_C RAB11 family-interactin 33.7 68 0.0023 19.7 4.1 28 128-155 12-39 (75)
14 1dd4_C 50S ribosomal protein L 33.0 40 0.0014 18.1 2.6 24 124-147 7-30 (40)
15 1lj9_A Transcriptional regulat 32.8 1E+02 0.0034 20.0 5.5 36 120-155 105-140 (144)
16 3hvz_A Uncharacterized protein 31.9 27 0.00092 21.5 2.1 20 52-71 7-28 (78)
17 2l5g_A GPS2 protein, G protein 31.8 61 0.0021 17.1 3.4 30 130-159 8-37 (38)
18 2phn_A F420-0:gamma-glutamyl l 31.6 10 0.00035 29.1 0.1 26 42-67 138-163 (254)
19 3fx7_A Putative uncharacterize 31.0 89 0.003 20.1 4.5 30 130-159 6-35 (94)
20 2k1v_A Insulin-like peptide IN 30.1 15 0.00051 17.8 0.5 9 40-48 14-22 (26)
21 2fbh_A Transcriptional regulat 30.1 70 0.0024 20.8 4.2 32 120-151 114-145 (146)
22 2jo8_A Serine/threonine-protei 29.7 69 0.0024 18.2 3.4 22 125-146 5-26 (51)
23 3rmq_A Uncharacterized protein 28.7 12 0.0004 25.0 -0.0 13 40-52 29-41 (116)
24 2w83_C C-JUN-amino-terminal ki 28.4 1.1E+02 0.0037 18.9 4.4 28 134-161 20-47 (77)
25 1vp7_A Exodeoxyribonuclease VI 27.5 1.3E+02 0.0044 19.5 4.9 37 128-164 49-92 (100)
26 3sl9_C B-cell CLL/lymphoma 9 p 27.0 61 0.0021 18.1 2.7 26 123-148 3-28 (55)
27 3kp7_A Transcriptional regulat 26.2 1.2E+02 0.004 19.9 4.9 34 119-152 114-147 (151)
28 1lyp_A CAP18; lipopolysacchari 24.8 72 0.0024 15.6 3.5 24 134-157 5-28 (32)
29 1ez3_A Syntaxin-1A; three heli 24.0 33 0.0011 22.6 1.6 67 90-158 9-75 (127)
30 4aik_A Transcriptional regulat 23.8 1.3E+02 0.0045 20.1 4.8 31 120-150 108-138 (151)
31 1j1d_B Troponin T, TNT; THIN f 23.3 80 0.0027 20.7 3.3 24 126-149 38-61 (106)
32 2ffg_A YKUJ; structural genomi 22.2 52 0.0018 20.8 2.1 19 47-65 32-50 (87)
33 1kaf_A Transcription regulator 22.2 39 0.0013 22.3 1.6 48 14-76 23-75 (108)
34 3eco_A MEPR; mutlidrug efflux 22.0 1.2E+02 0.004 19.5 4.1 31 119-149 108-138 (139)
35 1zps_A PRA-CH, phosphoribosyl- 21.9 39 0.0013 23.4 1.6 35 26-60 56-99 (138)
36 1z56_A Ligase interacting fact 21.8 22 0.00076 27.0 0.3 58 18-75 118-175 (246)
37 1x6i_A Hypothetical protein YG 21.8 77 0.0026 20.0 2.9 24 120-143 28-51 (91)
38 3nrv_A Putative transcriptiona 21.5 1.5E+02 0.005 19.3 4.6 31 120-150 116-146 (148)
39 3deu_A Transcriptional regulat 21.2 1.5E+02 0.0052 20.0 4.8 32 120-151 130-161 (166)
40 2hv8_D RAB11 family-interactin 21.2 1.4E+02 0.0048 17.7 4.9 37 123-159 16-52 (64)
41 2ygg_A Sodium/hydrogen exchang 21.2 1.1E+02 0.0037 18.5 3.3 25 130-154 4-28 (70)
42 1puz_A Conserved hypothetical 20.3 69 0.0024 19.8 2.4 24 120-143 28-51 (82)
43 3s2w_A Transcriptional regulat 20.3 1.7E+02 0.0058 19.3 4.8 32 119-150 125-156 (159)
No 1
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=7.6e-37 Score=203.25 Aligned_cols=73 Identities=37% Similarity=0.557 Sum_probs=67.4
Q ss_pred CCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhh
Q 048296 3 KKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIE 75 (167)
Q Consensus 3 ~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~ 75 (167)
+++|++|||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++|.|++ +||++|..
T Consensus 4 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 4 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999998 77776644
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.1e-36 Score=197.06 Aligned_cols=69 Identities=45% Similarity=0.790 Sum_probs=65.4
Q ss_pred CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhhh
Q 048296 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDEI 78 (167)
Q Consensus 10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~~ 78 (167)
||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++ .|++||...++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999998 99999987554
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.5e-36 Score=203.20 Aligned_cols=76 Identities=38% Similarity=0.614 Sum_probs=66.9
Q ss_pred CCCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhh
Q 048296 2 PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDE 77 (167)
Q Consensus 2 ~~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~ 77 (167)
+..++++|||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++|.|++ .|+++|....
T Consensus 9 ~~~~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~ 88 (100)
T 1mnm_A 9 PTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN 88 (100)
T ss_dssp ------CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred cCCCCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCc
Confidence 345778999999999999999999999999999999999999999999999999999999999988 8888886543
No 4
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=3e-36 Score=204.10 Aligned_cols=72 Identities=38% Similarity=0.572 Sum_probs=66.3
Q ss_pred CCCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhh
Q 048296 2 PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKF 73 (167)
Q Consensus 2 ~~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry 73 (167)
.+++|++|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|.|++ +||+++
T Consensus 2 ~~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 2 AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp ---CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 367899999999999999999999999999999999999999999999999999999999999998 777764
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=3.4e-36 Score=199.34 Aligned_cols=69 Identities=45% Similarity=0.790 Sum_probs=66.7
Q ss_pred CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhhh
Q 048296 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDEI 78 (167)
Q Consensus 10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~~ 78 (167)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++|.|++ .|++||...++
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999999999999987 99999988655
No 6
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=73.70 E-value=1.4 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=34.7
Q ss_pred eccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc
Q 048296 19 IENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD 67 (167)
Q Consensus 19 I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~ 67 (167)
|.+......||.=.-..|.++.-+||.+| ++.|+|.|+-|-.-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 44555666778888889999999999877 999999998665543
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=72.94 E-value=5.2 Score=19.68 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 048296 133 EELEKYKSCLEELRSNVAMKVEEMVM 158 (167)
Q Consensus 133 ~eL~~L~~~Le~~l~~v~~R~~~L~~ 158 (167)
++|+.|...|+.--+.+..++++|+-
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777764
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.21 E-value=42 Score=18.02 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=16.6
Q ss_pred cccCHHHHHHHHHHHHHHhhhhh
Q 048296 128 EDLNMEELEKYKSCLEELRSNVA 150 (167)
Q Consensus 128 ~~Ls~~eL~~L~~~Le~~l~~v~ 150 (167)
++.|+++|..|+..|+.+-+.+.
T Consensus 15 egfspeelaaleselqalekkla 37 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLA 37 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999888887666555443
No 9
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=37.72 E-value=28 Score=17.45 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.5
Q ss_pred hhhhcccCHHHHHHHHHHHHHH
Q 048296 124 EQSIEDLNMEELEKYKSCLEEL 145 (167)
Q Consensus 124 ~~~l~~Ls~~eL~~L~~~Le~~ 145 (167)
-+.+.+||+-|+.+|...|++.
T Consensus 7 ie~i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 7 IEAIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHHHHSBHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHH
Confidence 3567889999999999999875
No 10
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=36.37 E-value=64 Score=21.10 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHhhhhhHHHHH
Q 048296 119 LEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEE 155 (167)
Q Consensus 119 ~~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R~~~ 155 (167)
...++..-+++++.+|+..|...|......+...+++
T Consensus 106 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 142 (145)
T 3g3z_A 106 AQEFSDKVFATFGDKRTTRLFADLDALAEVMEKTISE 142 (145)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666788999999999999999998888776654
No 11
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=35.75 E-value=14 Score=17.68 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.9
Q ss_pred Ccceeeeecccc
Q 048296 23 SSRKVAFSKRRK 34 (167)
Q Consensus 23 ~~R~~tf~KRr~ 34 (167)
+.|++.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567888888864
No 12
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=35.21 E-value=23 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.677 Sum_probs=16.7
Q ss_pred hcccccceEEEEEcCCCcee
Q 048296 44 CRLCDTEIAIIVFSPKGRLY 63 (167)
Q Consensus 44 s~LC~v~va~ivfsp~~k~~ 63 (167)
+.-|+++|-+++|||+.+.|
T Consensus 116 ~~~ceiKvLiLlYs~~k~af 135 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIF 135 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSE
T ss_pred CCCcceEEEEEEEcCCccee
Confidence 55699999999999987654
No 13
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=33.72 E-value=68 Score=19.71 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=13.1
Q ss_pred cccCHHHHHHHHHHHHHHhhhhhHHHHH
Q 048296 128 EDLNMEELEKYKSCLEELRSNVAMKVEE 155 (167)
Q Consensus 128 ~~Ls~~eL~~L~~~Le~~l~~v~~R~~~ 155 (167)
..+|-+||.++.-.++..+..-+.++.+
T Consensus 12 ~~ltreELi~l~lk~~~~l~~k~~~v~e 39 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKELLRRKDTHIRE 39 (75)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444444333
No 14
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=32.96 E-value=40 Score=18.06 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.3
Q ss_pred hhhhcccCHHHHHHHHHHHHHHhh
Q 048296 124 EQSIEDLNMEELEKYKSCLEELRS 147 (167)
Q Consensus 124 ~~~l~~Ls~~eL~~L~~~Le~~l~ 147 (167)
-+.|.+||+-|+.+|...|++...
T Consensus 7 ie~i~~lTvlE~~eLvk~leekfG 30 (40)
T 1dd4_C 7 IEAIEKLTVSELAELVKKLEDKFG 30 (40)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHC
Confidence 467889999999999999998653
No 15
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=32.80 E-value=1e+02 Score=19.95 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHHHHhhhhhHHHHH
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEE 155 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R~~~ 155 (167)
..++..-+++++.+|+..|...|......+...+++
T Consensus 105 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 105 QHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 345566788999999999999999888887766554
No 16
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=31.86 E-value=27 Score=21.53 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=15.3
Q ss_pred EEEEEcCCCceeeccc--hhhh
Q 048296 52 AIIVFSPKGRLYSFGD--HVID 71 (167)
Q Consensus 52 a~ivfsp~~k~~~~~~--~Vi~ 71 (167)
-+.||.|+|.+..++. .++|
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D 28 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVID 28 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHH
T ss_pred eEEEECCCCCEEEecCCCCHHH
Confidence 3789999999888876 4444
No 17
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.77 E-value=61 Score=17.10 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=18.4
Q ss_pred cCHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 048296 130 LNMEELEKYKSCLEELRSNVAMKVEEMVMR 159 (167)
Q Consensus 130 Ls~~eL~~L~~~Le~~l~~v~~R~~~L~~~ 159 (167)
++++|..+=...|+..+..+++-+.+|..+
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555556666666666667776543
No 18
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=31.61 E-value=10 Score=29.08 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.9
Q ss_pred hhhcccccceEEEEEcCCCceeeccc
Q 048296 42 ELCRLCDTEIAIIVFSPKGRLYSFGD 67 (167)
Q Consensus 42 ELs~LC~v~va~ivfsp~~k~~~~~~ 67 (167)
+|.-.||++|++||+.+.|.+|-.|.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~ 163 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGV 163 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccC
Confidence 34466899999999999999988876
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=31.01 E-value=89 Score=20.07 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 048296 130 LNMEELEKYKSCLEELRSNVAMKVEEMVMR 159 (167)
Q Consensus 130 Ls~~eL~~L~~~Le~~l~~v~~R~~~L~~~ 159 (167)
.+++||+.|...|+.-...+++....|..+
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888777776544
No 20
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=30.12 E-value=15 Score=17.82 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=7.0
Q ss_pred hhhhhcccc
Q 048296 40 ASELCRLCD 48 (167)
Q Consensus 40 a~ELs~LC~ 48 (167)
.+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 479999995
No 21
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.11 E-value=70 Score=20.75 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=25.8
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHHHHhhhhhH
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLEELRSNVAM 151 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~ 151 (167)
..++..-+++++.+|+..|...|......+..
T Consensus 114 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 145 (146)
T 2fbh_A 114 ASVRNDVLTGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44556678899999999999999988777654
No 22
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=29.70 E-value=69 Score=18.16 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=15.4
Q ss_pred hhhcccCHHHHHHHHHHHHHHh
Q 048296 125 QSIEDLNMEELEKYKSCLEELR 146 (167)
Q Consensus 125 ~~l~~Ls~~eL~~L~~~Le~~l 146 (167)
+.|.+||.+||.+....|+.-+
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~~M 26 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDPMM 26 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHccHHH
Confidence 4577889999987766655443
No 23
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=28.68 E-value=12 Score=25.05 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=10.9
Q ss_pred hhhhhcccccceE
Q 048296 40 ASELCRLCDTEIA 52 (167)
Q Consensus 40 a~ELs~LC~v~va 52 (167)
...+.+|||++|.
T Consensus 29 G~~ftaLCG~~VT 41 (116)
T 3rmq_A 29 GRPFTALCGETVT 41 (116)
T ss_dssp TCCEECTTSCEEC
T ss_pred CCccccccCCeec
Confidence 3578999999987
No 24
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.42 E-value=1.1e+02 Score=18.90 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 048296 134 ELEKYKSCLEELRSNVAMKVEEMVMRRT 161 (167)
Q Consensus 134 eL~~L~~~Le~~l~~v~~R~~~L~~~~~ 161 (167)
+|.+-+++|+..++.+-.|+++|..++.
T Consensus 20 eLl~TKNaLnvvk~DLI~rvdELt~E~e 47 (77)
T 2w83_C 20 QLLETKNALNIVKNDLIAKVDELTCEKD 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6666677777777777777777766543
No 25
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.48 E-value=1.3e+02 Score=19.51 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=25.0
Q ss_pred cccCHHHH-------HHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 048296 128 EDLNMEEL-------EKYKSCLEELRSNVAMKVEEMVMRRTCEK 164 (167)
Q Consensus 128 ~~Ls~~eL-------~~L~~~Le~~l~~v~~R~~~L~~~~~~~~ 164 (167)
+++++++. ..|.......|..+..|+..|......++
T Consensus 49 gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L~~~~~~~~ 92 (100)
T 1vp7_A 49 GTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL 92 (100)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 34555554 35666788889999999999855444443
No 26
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=26.96 E-value=61 Score=18.11 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=18.4
Q ss_pred HhhhhcccCHHHHHHHHHHHHHHhhh
Q 048296 123 WEQSIEDLNMEELEKYKSCLEELRSN 148 (167)
Q Consensus 123 ~~~~l~~Ls~~eL~~L~~~Le~~l~~ 148 (167)
.+++-++||-++|.--+.+|+.+...
T Consensus 3 ~~~n~~gls~eqlehrerslqtlrdi 28 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQTLRDI 28 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHH
Confidence 35677899999999988888876653
No 27
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=26.25 E-value=1.2e+02 Score=19.93 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHhhhhhHH
Q 048296 119 LEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMK 152 (167)
Q Consensus 119 ~~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R 152 (167)
...++..-+++++.+|+..|...|+.....+..-
T Consensus 114 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 114 MSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677789999999999999998888776543
No 28
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=24.76 E-value=72 Score=15.65 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 048296 134 ELEKYKSCLEELRSNVAMKVEEMV 157 (167)
Q Consensus 134 eL~~L~~~Le~~l~~v~~R~~~L~ 157 (167)
.|+.+.+.+.+.++.|.+++.-|+
T Consensus 5 rlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 5 RLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777888888888888877665
No 29
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.02 E-value=33 Score=22.61 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=32.9
Q ss_pred hhhhhcCccccccCcccchhhhhhhhhhhHHHHHhhhhcccCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 048296 90 EAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVM 158 (167)
Q Consensus 90 ~~~~el~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R~~~L~~ 158 (167)
.|+.+++.++..+..+...+..+...+.. .+-...-+.-.-.+|..+...+...-..|+.+++.|-.
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~--~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHSA--ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544311 11111111112235566666666666666666666544
No 30
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=23.80 E-value=1.3e+02 Score=20.07 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHHHHhhhhh
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLEELRSNVA 150 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~ 150 (167)
..+...-++++|.+|+..|...|+....++.
T Consensus 108 ~~~~~~~~~~l~~ee~~~l~~~L~kl~~nl~ 138 (151)
T 4aik_A 108 SSTRKEILGGISSDEIAVLSGLIDKLEKNII 138 (151)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455666899999999999988887766653
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.28 E-value=80 Score=20.73 Aligned_cols=24 Identities=25% Similarity=0.280 Sum_probs=17.6
Q ss_pred hhcccCHHHHHHHHHHHHHHhhhh
Q 048296 126 SIEDLNMEELEKYKSCLEELRSNV 149 (167)
Q Consensus 126 ~l~~Ls~~eL~~L~~~Le~~l~~v 149 (167)
+|++||.++|.++-..|-+.+..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~L 61 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNL 61 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999999988777665544443
No 32
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=22.23 E-value=52 Score=20.84 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=15.7
Q ss_pred cccceEEEEEcCCCceeec
Q 048296 47 CDTEIAIIVFSPKGRLYSF 65 (167)
Q Consensus 47 C~v~va~ivfsp~~k~~~~ 65 (167)
-|+++|-|-|.|....|..
T Consensus 32 ~G~~~c~V~y~~~t~~F~L 50 (87)
T 2ffg_A 32 NGEKICSVKYFEKNQTFEL 50 (87)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEecCCCeEEE
Confidence 5899999999998776544
No 33
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=22.19 E-value=39 Score=22.31 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=31.4
Q ss_pred eEEEee-ccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhh
Q 048296 14 IEIKRI-ENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIED 76 (167)
Q Consensus 14 i~i~~I-~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~ 76 (167)
++++-+ +|.++=.++|.||..|+-+ +=...+|..--||- .++..|.+.
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~gYk~se~~~~~f~sl 75 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGYKMMEHHIQKFTDI 75 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEESCCHHHHHHHHTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEecCCHHHHHHHHhc
Confidence 556655 7888899999999999832 22234554444443 777777553
No 34
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=22.03 E-value=1.2e+02 Score=19.51 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHhhhh
Q 048296 119 LEFWWEQSIEDLNMEELEKYKSCLEELRSNV 149 (167)
Q Consensus 119 ~~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v 149 (167)
...++..-+++++.+|+..|...|+.....+
T Consensus 108 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l 138 (139)
T 3eco_A 108 FDEMEQTLVSQLSEEENEQMKANLTKMLSSL 138 (139)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 3455666788999999999999998877654
No 35
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=21.92 E-value=39 Score=23.38 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=27.7
Q ss_pred eeeeeccccccccc---------hhhhhcccccceEEEEEcCCC
Q 048296 26 KVAFSKRRKGMFKK---------ASELCRLCDTEIAIIVFSPKG 60 (167)
Q Consensus 26 ~~tf~KRr~gL~KK---------a~ELs~LC~v~va~ivfsp~~ 60 (167)
..-||+-|+.|+.| +.++.+=||-++-++..-|.|
T Consensus 56 ~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G 99 (138)
T 1zps_A 56 AHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEG 99 (138)
T ss_dssp CEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESS
T ss_pred EEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecC
Confidence 34457778766655 568999999999999999888
No 36
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=21.77 E-value=22 Score=26.95 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=7.3
Q ss_pred eeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccchhhhhhhh
Q 048296 18 RIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIE 75 (167)
Q Consensus 18 ~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~~Vi~ry~~ 75 (167)
.|++...-.+|+.||-.||..|..+|+.--+-+=+|=.|--++++|.--+.+-++|..
T Consensus 118 ~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q~i~~ln~k~~~ 175 (246)
T 1z56_A 118 RMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYKDICCVNDSYRN 175 (246)
T ss_dssp -----------------------------------------CTTSGGGTTHHHHHHHH
T ss_pred CceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666689999999999988877754333222222233333332222255566654
No 37
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=21.75 E-value=77 Score=20.04 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHH
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLE 143 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le 143 (167)
..+....+..||.+|+..|...|+
T Consensus 28 ~~F~~~~~~~ls~~el~~f~~LL~ 51 (91)
T 1x6i_A 28 MPFFEHEYDSLSDDEKRIFIRLLE 51 (91)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHc
Confidence 456778899999999999998775
No 38
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=21.48 E-value=1.5e+02 Score=19.25 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=24.9
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHHHHhhhhh
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLEELRSNVA 150 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~ 150 (167)
..++..-+++++.+|+..|...|......+.
T Consensus 116 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~ 146 (148)
T 3nrv_A 116 IEREKQLLEEFEEAEKDQLFILLKKLRNKVD 146 (148)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 3456667889999999999999988877654
No 39
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=21.25 E-value=1.5e+02 Score=19.96 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHHHHhhhhhH
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLEELRSNVAM 151 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~ 151 (167)
..++..-+++++.+|+..|...|+.+...+.+
T Consensus 130 ~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~ 161 (166)
T 3deu_A 130 HKTRGEILAGISSEEIELLIKLIAKLEHNIME 161 (166)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556668899999999999999888777653
No 40
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=21.19 E-value=1.4e+02 Score=17.70 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=22.5
Q ss_pred HhhhhcccCHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 048296 123 WEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMR 159 (167)
Q Consensus 123 ~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R~~~L~~~ 159 (167)
+...++++|-+||.+....-++....++.=++.|+..
T Consensus 16 lAae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~~ 52 (64)
T 2hv8_D 16 LAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVA 52 (64)
T ss_dssp HHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777666665555555555555555543
No 41
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=21.15 E-value=1.1e+02 Score=18.52 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHHhhhhhHHHH
Q 048296 130 LNMEELEKYKSCLEELRSNVAMKVE 154 (167)
Q Consensus 130 Ls~~eL~~L~~~Le~~l~~v~~R~~ 154 (167)
|+.+++.++...|...+-.+++|.-
T Consensus 4 ls~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 4 LSKDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999999988754
No 42
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=20.29 E-value=69 Score=19.83 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.4
Q ss_pred HHHHhhhhcccCHHHHHHHHHHHH
Q 048296 120 EFWWEQSIEDLNMEELEKYKSCLE 143 (167)
Q Consensus 120 ~~~~~~~l~~Ls~~eL~~L~~~Le 143 (167)
..+....+..||.+|+..++..|+
T Consensus 28 ~~F~~~~~~~ls~~el~~f~~LL~ 51 (82)
T 1puz_A 28 GRFMEKEFEHLSDKELSEFSEILE 51 (82)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHc
Confidence 456778899999999999998775
No 43
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=20.27 E-value=1.7e+02 Score=19.33 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHhhhhh
Q 048296 119 LEFWWEQSIEDLNMEELEKYKSCLEELRSNVA 150 (167)
Q Consensus 119 ~~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~ 150 (167)
...++..-+++++.+|+..|...|......+.
T Consensus 125 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~ 156 (159)
T 3s2w_A 125 ASEWGEILFSSFDDRQRREITNSLEIMFENGL 156 (159)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34455666889999999999999988877654
Done!