Your job contains 1 sequence.
>048299
MLGSLNNTTSSRHDQQQEEDPLAAAASSSDLMLQHHQPLHQSHHQYSSSSSSSRVGGLMN
SPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLN
LHHANATLLMMNITTTTTATTLPYNTTTYNDRNALQSCYLSLNQITPFIRFSHLTANQAI
LESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQ
RTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLL
KDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLP
PNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQ
AKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048299
(459 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2020487 - symbol:LAS "AT1G55580" species:3702 ... 1075 9.0e-109 1
UNIPROTKB|Q84MM9 - symbol:MOC1 "Protein MONOCULM 1" speci... 753 1.2e-74 1
TAIR|locus:2099624 - symbol:RGL2 "RGA-like 2" species:370... 512 8.7e-53 2
TAIR|locus:2008086 - symbol:SCL3 "AT1G50420" species:3702... 304 9.2e-51 3
TAIR|locus:2015243 - symbol:AT1G63100 "AT1G63100" species... 486 1.4e-50 2
TAIR|locus:2157477 - symbol:RGL3 "RGA-like protein 3" spe... 485 4.7e-50 2
TAIR|locus:2174974 - symbol:AT5G66770 "AT5G66770" species... 474 9.8e-50 2
TAIR|locus:2005516 - symbol:RGA1 "REPRESSOR OF GA1-3 1" s... 468 4.7e-48 2
TAIR|locus:2006747 - symbol:GAI "GIBBERELLIC ACID INSENSI... 471 1.6e-47 2
TAIR|locus:2164783 - symbol:PAT1 "AT5G48150" species:3702... 438 5.3e-47 2
TAIR|locus:2101694 - symbol:AT3G50650 "AT3G50650" species... 463 1.8e-46 2
TAIR|locus:2201557 - symbol:RGL1 "RGA-like 1" species:370... 452 3.7e-46 2
TAIR|locus:2026982 - symbol:SCL1 "AT1G21450" species:3702... 423 6.7e-45 2
TAIR|locus:2008076 - symbol:SCL5 "AT1G50600" species:3702... 419 5.2e-43 2
TAIR|locus:2044973 - symbol:SCL21 "AT2G04890" species:370... 421 6.7e-43 2
TAIR|locus:2165685 - symbol:AT5G41920 "AT5G41920" species... 439 2.2e-41 1
TAIR|locus:2132482 - symbol:AT4G08250 "AT4G08250" species... 403 1.5e-37 1
TAIR|locus:2075155 - symbol:AT3G46600 species:3702 "Arabi... 337 1.0e-36 2
TAIR|locus:2025032 - symbol:AT1G07520 "AT1G07520" species... 380 1.6e-36 2
TAIR|locus:2040701 - symbol:AT2G37650 species:3702 "Arabi... 315 1.4e-35 2
TAIR|locus:2120106 - symbol:SHR "AT4G37650" species:3702 ... 367 9.5e-34 1
TAIR|locus:2080345 - symbol:SCR "SCARECROW" species:3702 ... 362 1.6e-32 1
TAIR|locus:2148293 - symbol:AT5G59450 species:3702 "Arabi... 309 1.8e-32 2
TAIR|locus:2184625 - symbol:SCL8 "AT5G52510" species:3702... 330 8.4e-31 2
TAIR|locus:2025022 - symbol:SCL14 "SCARECROW-like 14" spe... 327 1.6e-28 1
TAIR|locus:2083073 - symbol:AT3G49950 "AT3G49950" species... 316 2.4e-28 1
TAIR|locus:2101801 - symbol:HAM2 "AT3G60630" species:3702... 304 2.8e-26 1
TAIR|locus:2055622 - symbol:HAM1 "AT2G45160" species:3702... 301 6.5e-26 1
UNIPROTKB|Q6DLS1 - symbol:SCL1 "SCARECROW-like protein" s... 239 1.2e-17 1
TAIR|locus:2115340 - symbol:HAM4 "AT4G36710" species:3702... 231 1.2e-16 1
TAIR|locus:2126901 - symbol:HAM3 "AT4G00150" species:3702... 179 2.3e-12 2
TAIR|locus:1009023400 - symbol:AT5G67411 "AT5G67411" spec... 160 4.6e-11 1
TAIR|locus:2087994 - symbol:AT3G13840 "AT3G13840" species... 168 1.7e-09 1
UNIPROTKB|Q1AHE4 - symbol:SCL "SCARECROW-like protein" sp... 135 2.4e-08 1
>TAIR|locus:2020487 [details] [associations]
symbol:LAS "AT1G55580" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010223 "secondary shoot formation" evidence=IMP]
Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 EMBL:AC002328 GO:GO:0010223
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
eggNOG:NOG323432 EMBL:AY196482 EMBL:BT026519 EMBL:EF598379
EMBL:EF598380 EMBL:EF598381 EMBL:EF598382 EMBL:EF598383
EMBL:EF598384 EMBL:EF598385 EMBL:EF598386 EMBL:EF598387
EMBL:EF598388 EMBL:EF598389 EMBL:EF598390 EMBL:EF598391
EMBL:EF598392 EMBL:EF598393 EMBL:EF598394 EMBL:EF598395
EMBL:EF598396 EMBL:EF598397 EMBL:EF598398 EMBL:EF598399
EMBL:EF598400 EMBL:EF598401 EMBL:EF598402 IPI:IPI00532485
RefSeq:NP_175954.1 UniGene:At.45199 STRING:Q9ZWC5
EnsemblPlants:AT1G55580.1 GeneID:842007 KEGG:ath:AT1G55580
GeneFarm:4247 TAIR:At1g55580 InParanoid:Q9ZWC5 OMA:EREANHG
PhylomeDB:Q9ZWC5 ProtClustDB:CLSN2682663 Genevestigator:Q9ZWC5
Uniprot:Q9ZWC5
Length = 445
Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
Identities = 222/408 (54%), Positives = 277/408 (67%)
Query: 66 HMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAX 125
H+R+LL + A SQ++F+AA L+SILS NSSP+GDS ERLVH F +ALS+R+N
Sbjct: 40 HLRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQD 99
Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXX-----------DRNA-LQSCY-LSLNQITPFIRFS 172
+ N+ +SCY L LNQ+TPFIRF
Sbjct: 100 QTAETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFG 159
Query: 173 HLTANQAILESLQVGQQ-SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITG 231
HLTANQAIL++ + ++HILD DI G+QWPPLMQAL ER +SN PPP LRITG
Sbjct: 160 HLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAER--SSNPSSPPPSLRITG 217
Query: 232 TGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPS-ALTILPDETLAV 290
G D+ L RTG+RL +FA SLGL+FQFH L+++ +D + + AL+ + ET+AV
Sbjct: 218 CGRDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAV 277
Query: 291 NCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGA 350
NC+ FLHK+ D D + FL IK+LN R+VT+AEREA+H FL RF EAVDHY A
Sbjct: 278 NCVHFLHKIFND-DGDMIGHFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMA 336
Query: 351 IFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSN 410
IFDSLEATLPPNSRERL +EQ WFG+EI+++VA E RK+RH RF+ WE +++ G+ N
Sbjct: 337 IFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFVN 396
Query: 411 VPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
VP+ +ALSQAKLLLRLHYPSEGY LQ LNNSLFLGWQNR LFSVSSW
Sbjct: 397 VPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGWQNRPLFSVSSW 444
>UNIPROTKB|Q84MM9 [details] [associations]
symbol:MOC1 "Protein MONOCULM 1" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IDA]
[GO:0010014 "meristem initiation" evidence=IMP] Pfam:PF03514
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 InterPro:IPR005202
PROSITE:PS50985 EMBL:AY242058 EMBL:AP003616 Gramene:Q84MM9
eggNOG:NOG323432 GO:GO:0010014 Uniprot:Q84MM9
Length = 441
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 191/412 (46%), Positives = 242/412 (58%)
Query: 68 RQLLISCAELFSQADFSAAHRLISI-LSANSSPYGDSIERLVHQFIRALSLRLNLHHAXX 126
R LL++CA+L + D AA R I L+A +SP GD+ +RL + F RAL+LR++
Sbjct: 51 RDLLLACADLLQRGDLPAARRAAEIVLAAAASPRGDAADRLAYHFARALALRVDAKAGHG 110
Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQV 186
R A YL+ NQI PF+RF+HLTANQAILE++
Sbjct: 111 HVVVGGGAA----------------RPASSGAYLAFNQIAPFLRFAHLTANQAILEAVD- 153
Query: 187 GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERL 246
G + +HILD D +HGVQWPPL+QA+ ER ++ PP +R+TG G D + L RTG RL
Sbjct: 154 GARRVHILDLDAVHGVQWPPLLQAIAER---ADPALGPPEVRVTGAGADRDTLLRTGNRL 210
Query: 247 LKFAQSLGLRFQFHPLLLM--NDDP-----TSV----AFYLPSALTIL---PDETLAVNC 292
FA+S+ L F F PLLL P TS A +A T L PDETLAVNC
Sbjct: 211 RAFARSIHLPFHFTPLLLSCATTAPHHVAGTSTGAAAAASTAAAATGLEFHPDETLAVNC 270
Query: 293 MLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASH-----NHPLFLQRFVE-AVD 346
++FLH L HD +L FL +KA++P VVTIAEREA +H L R V A+D
Sbjct: 271 VMFLHNLA-GHD--ELAAFLKWVKAMSPAVVTIAEREAGGGGGGGDHIDDLPRRVGVAMD 327
Query: 347 HYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSC 406
HY A+F++LEAT+PP SRERLAVEQ GREI V G ER W R+
Sbjct: 328 HYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSGGRWWRGIER---WGGAARAA 384
Query: 407 GYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
G++ PLS +A+SQA+LLLRLHYPSEGY +Q + FLGWQ R L SVS+W
Sbjct: 385 GFAARPLSAFAVSQARLLLRLHYPSEGYLVQEARGACFLGWQTRPLLSVSAW 436
>TAIR|locus:2099624 [details] [associations]
symbol:RGL2 "RGA-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;TAS] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA;TAS] [GO:0010187 "negative regulation of seed
germination" evidence=IMP] [GO:0009938 "negative regulation of
gibberellic acid mediated signaling pathway" evidence=TAS]
[GO:0009651 "response to salt stress" evidence=IGI] [GO:0009723
"response to ethylene stimulus" evidence=IGI;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;IGI;RCA]
[GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
[GO:2000033 "regulation of seed dormancy process" evidence=IGI]
[GO:0009739 "response to gibberellin stimulus" evidence=IEP]
[GO:2000377 "regulation of reactive oxygen species metabolic
process" evidence=IGI] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=IGI;RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=IGI;RCA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009062 "fatty acid catabolic process"
evidence=RCA] [GO:0009686 "gibberellin biosynthetic process"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010325 "raffinose family oligosaccharide biosynthetic process"
evidence=RCA] [GO:0048444 "floral organ morphogenesis"
evidence=RCA] [GO:0048608 "reproductive structure development"
evidence=RCA] Pfam:PF03514 GO:GO:0009737 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0030154 GO:GO:0006952
GO:GO:0009723 GO:GO:0003700 GO:GO:0006351 GO:GO:0010187
GO:GO:0009908 GO:GO:0042538 EMBL:AC009895 GO:GO:2000377
GO:GO:0040029 GO:GO:0009867 GO:GO:0009863 GO:GO:0009740
eggNOG:NOG243696 HOGENOM:HOG000238577 KO:K14494 GO:GO:0009938
GO:GO:2000033 InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041
PROSITE:PS50985 EMBL:AK118009 IPI:IPI00521981 RefSeq:NP_186995.1
UniGene:At.18489 UniGene:At.67027 ProteinModelPortal:Q8GXW1
SMR:Q8GXW1 IntAct:Q8GXW1 STRING:Q8GXW1 EnsemblPlants:AT3G03450.1
GeneID:821251 KEGG:ath:AT3G03450 GeneFarm:4240 TAIR:At3g03450
InParanoid:Q8GXW1 OMA:MLSELNN PhylomeDB:Q8GXW1
ProtClustDB:CLSN2684085 Genevestigator:Q8GXW1 GermOnline:AT3G03450
Uniprot:Q8GXW1
Length = 547
Score = 512 (185.3 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 111/299 (37%), Positives = 180/299 (60%)
Query: 167 PFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQP--P 224
P+++F+H TANQAILE++ ++ +H++D + G+QWP LMQAL L+P P
Sbjct: 263 PYLKFAHFTANQAILEAVTTARR-VHVIDLGLNQGMQWPALMQALA--------LRPGGP 313
Query: 225 PMLRITGTG----NDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSAL 280
P R+TG G + + LQ+ G +L +FAQ++G+ F+F L S++ P
Sbjct: 314 PSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAA-----ESLSDLEPEMF 368
Query: 281 TILPD-ETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQ 339
P+ ETL VN + LH+LL + + L+ +KA+ P +VT+ E+EA+HN +FL
Sbjct: 369 ETRPESETLVVNSVFELHRLLARSGS--IEKLLNTVKAIKPSIVTVVEQEANHNGIVFLD 426
Query: 340 RFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSW 399
RF EA+ +Y ++FDSLE + S++R+ + +V+ GR+I+ +VA EG +R ERHE W
Sbjct: 427 RFNEALHYYSSLFDSLEDSYSLPSQDRV-MSEVYLGRQILNVVAAEGSDRVERHETAAQW 485
Query: 400 EMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+ ++S G+ + L A QA +LL L+ +GY+++ + L +GWQ R L + S+W
Sbjct: 486 RIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAW 544
Score = 52 (23.4 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+ + L++CAE Q + + A L+ + + ++ ++ F +AL+ R+
Sbjct: 178 VRLVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRI 232
>TAIR|locus:2008086 [details] [associations]
symbol:SCL3 "AT1G50420" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009739 "response to gibberellin
stimulus" evidence=IEP] Pfam:PF03514 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
GO:GO:0009739 EMBL:AC012561 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:AY056154 EMBL:AY091260 EMBL:AF036301
IPI:IPI00539428 PIR:E96540 PIR:T51235 RefSeq:NP_175459.1
UniGene:At.14826 IntAct:Q9LPR8 STRING:Q9LPR8
EnsemblPlants:AT1G50420.1 GeneID:841464 KEGG:ath:AT1G50420
GeneFarm:4258 TAIR:At1g50420 eggNOG:NOG310008 InParanoid:Q9LPR8
OMA:MVHVIDL PhylomeDB:Q9LPR8 ProtClustDB:CLSN2913643
Genevestigator:Q9LPR8 Uniprot:Q9LPR8
Length = 482
Score = 304 (112.1 bits), Expect = 9.2e-51, Sum P(3) = 9.2e-51
Identities = 57/148 (38%), Positives = 96/148 (64%)
Query: 311 FLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVE 370
FL+ I L+P+V+ + E+++ HN ++R +E++ Y A+FD LE +P S++R+ VE
Sbjct: 332 FLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVE 391
Query: 371 QVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYP 430
++ FG EI I++ EG R+ERHE+ + W + G+ NVPLS YA+ QA+ LL+
Sbjct: 392 KMLFGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQ-GCG 450
Query: 431 SEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+GY+++ + + WQ+R L+SVS+W
Sbjct: 451 FDGYRIKEESGCAVICWQDRPLYSVSAW 478
Score = 187 (70.9 bits), Expect = 9.2e-51, Sum P(3) = 9.2e-51
Identities = 48/141 (34%), Positives = 79/141 (56%)
Query: 164 QITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQP 223
++ P ++ S+L N+AILE+++ G++ +H++D D QW L+QA NS +
Sbjct: 139 EMFPILKVSYLLTNRAILEAME-GEKMVHVIDLDASEPAQWLALLQAF-----NSRP-EG 191
Query: 224 PPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTIL 283
PP LRITG + E+L++ RL++ A+ L + FQF+P++ D +V L +
Sbjct: 192 PPHLRITGVHHQKEVLEQMAHRLIEEAEKLDIPFQFNPVV-SRLDCLNV-----EQLRVK 245
Query: 284 PDETLAVNCMLFLHKLLKDHD 304
E LAV+ +L LH L D
Sbjct: 246 TGEALAVSSVLQLHTFLASDD 266
Score = 74 (31.1 bits), Expect = 9.2e-51, Sum P(3) = 9.2e-51
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+++ LL++CA + A+ + LS +SP GD+++R+ F AL+ R+
Sbjct: 52 LYLIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRI 106
>TAIR|locus:2015243 [details] [associations]
symbol:AT1G63100 "AT1G63100" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0048451 "petal formation" evidence=RCA]
[GO:0048453 "sepal formation" evidence=RCA] Pfam:PF03514
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003700
GO:GO:0006351 EMBL:AC010795 InterPro:IPR005202 PROSITE:PS50985
IPI:IPI00520577 PIR:D96656 RefSeq:NP_176498.1 UniGene:At.66082
ProteinModelPortal:Q9CAN3 SMR:Q9CAN3 PRIDE:Q9CAN3
EnsemblPlants:AT1G63100.1 GeneID:842613 KEGG:ath:AT1G63100
GeneFarm:4261 TAIR:At1g63100 eggNOG:NOG286854 HOGENOM:HOG000241666
InParanoid:Q9CAN3 OMA:RTKCENE PhylomeDB:Q9CAN3
ProtClustDB:CLSN2682380 Genevestigator:Q9CAN3 Uniprot:Q9CAN3
Length = 658
Score = 486 (176.1 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 110/309 (35%), Positives = 179/309 (57%)
Query: 162 LNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNML 221
LNQ+TP +F H TAN+ +L + + G++ +HI+DFDI G+QWP Q+L R +
Sbjct: 358 LNQVTPIPKFIHFTANEMLLRAFE-GKERVHIIDFDIKQGLQWPSFFQSLASR------I 410
Query: 222 QPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALT 281
PP +RITG G L TG+RL FA+++ L+F+FHP++ +D V ++ L
Sbjct: 411 NPPHHVRITGIGESKLELNETGDRLHGFAEAMNLQFEFHPVVDRLED---VRLWM---LH 464
Query: 282 ILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRF 341
+ E++AVNC++ +HK L D +R FL I++ NP + +AE+EA HN R
Sbjct: 465 VKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRV 524
Query: 342 VEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEM 401
++ +Y A+FD++ L +S R+ VE++ FGREI IVA EG +R+ERH F W
Sbjct: 525 CNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRR 584
Query: 402 ILRSCGYSNVPLSGYALSQAKLLLRLH-YPSEGY---QLQVLNNS--------LFLGWQN 449
+L G+ ++ +S + Q+K+LLR++ +EG+ + +N + L W
Sbjct: 585 MLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERSDEDNGGEGGRGGGVTLRWSE 644
Query: 450 RALFSVSSW 458
+ L+++S+W
Sbjct: 645 QPLYTISAW 653
Score = 57 (25.1 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 70 LLISCAELFSQADFSAAHRLISILSANSSPYGDS-IERLVHQFIRALSLRL 119
LL C + + +A + I+ +SP G + + RL+ +I AL+LR+
Sbjct: 277 LLTGCLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALALRV 327
>TAIR|locus:2157477 [details] [associations]
symbol:RGL3 "RGA-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009739 "response to gibberellin
stimulus" evidence=IEP;ISS] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;TAS] [GO:0009686 "gibberellin
biosynthetic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009723 "response to ethylene
stimulus" evidence=RCA] [GO:0009737 "response to abscisic acid
stimulus" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009863 "salicylic acid mediated signaling
pathway" evidence=RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010325 "raffinose family
oligosaccharide biosynthetic process" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] [GO:0048444 "floral
organ morphogenesis" evidence=RCA] Pfam:PF03514 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0040029 EMBL:AL391150 GO:GO:0009740
HOGENOM:HOG000238577 KO:K14494 InterPro:IPR021914
InterPro:IPR005202 Pfam:PF12041 PROSITE:PS50985
ProtClustDB:CLSN2684085 EMBL:AK117226 EMBL:BT005905 IPI:IPI00544591
PIR:T51475 RefSeq:NP_197251.1 UniGene:At.31541
ProteinModelPortal:Q9LF53 SMR:Q9LF53 PaxDb:Q9LF53 PRIDE:Q9LF53
EnsemblPlants:AT5G17490.1 GeneID:831615 KEGG:ath:AT5G17490
GeneFarm:4241 TAIR:At5g17490 eggNOG:NOG300920 InParanoid:Q9LF53
OMA:RRIYRIH PhylomeDB:Q9LF53 Genevestigator:Q9LF53
GermOnline:AT5G17490 Uniprot:Q9LF53
Length = 523
Score = 485 (175.8 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 111/296 (37%), Positives = 171/296 (57%)
Query: 167 PFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQP--P 224
P+++F+H TANQAILE++ + +H++D + G+QWP LMQAL L+P P
Sbjct: 236 PYLKFAHFTANQAILEAVTTSRV-VHVIDLGLNQGMQWPALMQALA--------LRPGGP 286
Query: 225 PMLRITGTGN--DIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTI 282
P R+TG GN + E +Q G +L + AQ++G+ F+F+ L + T
Sbjct: 287 PSFRLTGVGNPSNREGIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFE----TR 342
Query: 283 LPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFV 342
ETL VN + LH +L + + L +KA+ P +VT+ E+EA+HN +FL RF
Sbjct: 343 TESETLVVNSVFELHPVLSQPGS--IEKLLATVKAVKPGLVTVVEQEANHNGDVFLDRFN 400
Query: 343 EAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMI 402
EA+ +Y ++FDSLE + S++R+ + +V+ GR+I+ +VATEG +R ERHE W
Sbjct: 401 EALHYYSSLFDSLEDGVVIPSQDRV-MSEVYLGRQILNLVATEGSDRIERHETLAQWRKR 459
Query: 403 LRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+ S G+ V L A QA LLL L +GY+++ + SL L WQ + L + S+W
Sbjct: 460 MGSAGFDPVNLGSDAFKQASLLLALSGGGDGYRVEENDGSLMLAWQTKPLIAASAW 515
Score = 53 (23.7 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL-NLH 122
+ + Q L++CAE + S A L+ + ++ ++ ++ F AL+ R+ +H
Sbjct: 155 VRLVQALVACAEAVQLENLSLADALVKRVGLLAASQAGAMGKVATYFAEALARRIYRIH 213
>TAIR|locus:2174974 [details] [associations]
symbol:AT5G66770 "AT5G66770" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351 EMBL:AB010700
InterPro:IPR005202 PROSITE:PS50985 EMBL:AY062538 EMBL:BT002580
IPI:IPI00537848 RefSeq:NP_201478.1 UniGene:At.27307
ProteinModelPortal:Q9FL03 IntAct:Q9FL03 PRIDE:Q9FL03
EnsemblPlants:AT5G66770.1 GeneID:836810 KEGG:ath:AT5G66770
GeneFarm:4249 TAIR:At5g66770 eggNOG:NOG324692 HOGENOM:HOG000240374
InParanoid:Q9FL03 OMA:DASCSAP PhylomeDB:Q9FL03
ProtClustDB:CLSN2684429 Genevestigator:Q9FL03 Uniprot:Q9FL03
Length = 584
Score = 474 (171.9 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 121/308 (39%), Positives = 170/308 (55%)
Query: 159 YLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNS 218
Y +LN P+ +F+HLTANQAILE+ + + IHI+DF I+ G+QWP L+QAL R
Sbjct: 289 YKTLNDACPYSKFAHLTANQAILEATEKSNK-IHIVDFGIVQGIQWPALLQALATRTSGK 347
Query: 219 NMLQPPPMLRITGT-----GNDIE-ILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSV 272
P +R++G G E L TG RL FA+ L L F F P+L T +
Sbjct: 348 -----PTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPIL------TPI 396
Query: 273 AFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASH 332
S+ + PDE LAVN ML L+KLL + T + L K+LNPRVVT+ E E S
Sbjct: 397 HLLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTI-VDTALRLAKSLNPRVVTLGEYEVSL 455
Query: 333 NHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGEN-RKE 391
N F R A+ Y A+F+SLE L +S ER+ VE+ FGR I ++ E +E
Sbjct: 456 NRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHRE 515
Query: 392 RHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQL-QVLNNSLFLGWQNR 450
R E + W +++ + G+ +V LS YA+SQAK+LL + S Y + + + L W +
Sbjct: 516 RMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDL 575
Query: 451 ALFSVSSW 458
L ++SSW
Sbjct: 576 PLLTLSSW 583
Score = 61 (26.5 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 62 PPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLN 120
PP + + + CA + S +D + A + + + + S GD ER+ F ALS RL+
Sbjct: 215 PPLL---KAIYDCARI-SDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLS 269
>TAIR|locus:2005516 [details] [associations]
symbol:RGA1 "REPRESSOR OF GA1-3 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0009740
"gibberellic acid mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009651 "response
to salt stress" evidence=IGI;RCA] [GO:0009723 "response to ethylene
stimulus" evidence=IGI;RCA] [GO:0009737 "response to abscisic acid
stimulus" evidence=IGI;RCA] [GO:0042538 "hyperosmotic salinity
response" evidence=IGI;RCA] [GO:0010029 "regulation of seed
germination" evidence=IGI] [GO:2000033 "regulation of seed dormancy
process" evidence=IGI] [GO:0010187 "negative regulation of seed
germination" evidence=IGI] [GO:0010218 "response to far red light"
evidence=IEP] [GO:2000377 "regulation of reactive oxygen species
metabolic process" evidence=IGI] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=IGI;RCA] [GO:0042176
"regulation of protein catabolic process" evidence=IMP] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010325 "raffinose family
oligosaccharide biosynthetic process" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] [GO:0046686
"response to cadmium ion" evidence=RCA] [GO:0048444 "floral organ
morphogenesis" evidence=RCA] [GO:0009938 "negative regulation of
gibberellic acid mediated signaling pathway" evidence=IGI]
Pfam:PF03514 GO:GO:0007275 GO:GO:0009737 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009723 GO:GO:0003700
GO:GO:0006351 GO:GO:0010218 GO:GO:0010187 GO:GO:0042176
GO:GO:0042538 EMBL:AC005560 GO:GO:2000377 GO:GO:0040029
GO:GO:0009867 GO:GO:0009740 eggNOG:NOG243696 HOGENOM:HOG000238577
KO:K14494 ProtClustDB:CLSN2682993 GO:GO:0009938 GO:GO:2000033
InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041 PROSITE:PS50985
EMBL:Y11336 EMBL:Y15194 EMBL:AY052239 EMBL:AY054160 EMBL:BT010467
IPI:IPI00523272 PIR:D84426 RefSeq:NP_178266.1 UniGene:At.24012
ProteinModelPortal:Q9SLH3 SMR:Q9SLH3 IntAct:Q9SLH3 STRING:Q9SLH3
PRIDE:Q9SLH3 EnsemblPlants:AT2G01570.1 GeneID:814686
KEGG:ath:AT2G01570 GeneFarm:4238 TAIR:At2g01570 InParanoid:Q9SLH3
OMA:VHALMAC PhylomeDB:Q9SLH3 Genevestigator:Q9SLH3
GermOnline:AT2G01570 Uniprot:Q9SLH3
Length = 587
Score = 468 (169.8 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 105/298 (35%), Positives = 169/298 (56%)
Query: 167 PFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPM 226
P+++F+H TANQAILE+ + G++ +H++DF + G+QWP LMQAL R PP
Sbjct: 300 PYLKFAHFTANQAILEAFE-GKKRVHVIDFSMNQGLQWPALMQALALREGG------PPT 352
Query: 227 LRITGTG----NDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTI 282
R+TG G ++ + L G +L + A+++ + F++ + S+A S L +
Sbjct: 353 FRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVA-----NSLADLDASMLEL 407
Query: 283 LPDET--LAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQR 340
P +T +AVN + LHKLL + L +K + P + T+ E+E++HN P+FL R
Sbjct: 408 RPSDTEAVAVNSVFELHKLLGRPG--GIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDR 465
Query: 341 FVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWE 400
F E++ +Y +FDSLE PNS++++ + +V+ G++I +VA EG +R ERHE W
Sbjct: 466 FTESLHYYSTLFDSLEGV--PNSQDKV-MSEVYLGKQICNLVACEGPDRVERHETLSQWG 522
Query: 401 MILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
S G + L A QA +LL + +GY+++ N L LGW R L + S+W
Sbjct: 523 NRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAW 580
Score = 51 (23.0 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+ + L++CAE Q + + A L+ + + ++ ++ F AL+ R+
Sbjct: 219 VRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRI 273
>TAIR|locus:2006747 [details] [associations]
symbol:GAI "GIBBERELLIC ACID INSENSITIVE" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA;TAS] [GO:0009938 "negative regulation of gibberellic
acid mediated signaling pathway" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010233 "phloem transport"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IGI]
[GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA]
[GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
[GO:2000033 "regulation of seed dormancy process" evidence=IGI]
[GO:0009739 "response to gibberellin stimulus" evidence=IEP]
[GO:0010187 "negative regulation of seed germination" evidence=IGI]
[GO:0010218 "response to far red light" evidence=IEP] [GO:2000377
"regulation of reactive oxygen species metabolic process"
evidence=IGI] [GO:0009863 "salicylic acid mediated signaling
pathway" evidence=IGI;RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=IGI;RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010325 "raffinose family oligosaccharide biosynthetic process"
evidence=RCA] [GO:0048444 "floral organ morphogenesis"
evidence=RCA] [GO:0006808 "regulation of nitrogen utilization"
evidence=IMP] Pfam:PF03514 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634 GO:GO:0009723
GO:GO:0003700 GO:GO:0006351 GO:GO:0010218 GO:GO:0010187
GO:GO:0006808 GO:GO:0042538 GO:GO:2000377 EMBL:AC006917
GO:GO:0010233 GO:GO:0040029 GO:GO:0009867 GO:GO:0009863
GO:GO:0009740 EMBL:Y11337 EMBL:Y15193 EMBL:AY058194 EMBL:AY142002
IPI:IPI00535232 PIR:H86282 RefSeq:NP_172945.1 UniGene:At.15032
UniGene:At.75604 PDB:2ZSH PDB:2ZSI PDBsum:2ZSH PDBsum:2ZSI
ProteinModelPortal:Q9LQT8 SMR:Q9LQT8 DIP:DIP-32985N IntAct:Q9LQT8
STRING:Q9LQT8 EnsemblPlants:AT1G14920.1 GeneID:838057
KEGG:ath:AT1G14920 GeneFarm:4235 TAIR:At1g14920 eggNOG:NOG243696
HOGENOM:HOG000238577 InParanoid:Q9LQT8 KO:K14494 OMA:RRVYRFR
PhylomeDB:Q9LQT8 ProtClustDB:CLSN2682993 EvolutionaryTrace:Q9LQT8
Genevestigator:Q9LQT8 GermOnline:AT1G14920 GO:GO:0009938
GO:GO:2000033 InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041
PROSITE:PS50985 Uniprot:Q9LQT8
Length = 533
Score = 471 (170.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 104/316 (32%), Positives = 176/316 (55%)
Query: 151 DRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQA 210
D + + + + P+++F+H TANQAILE+ Q G++ +H++DF + G+QWP LMQA
Sbjct: 232 DHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQ-GKKRVHVIDFSMSQGLQWPALMQA 290
Query: 211 LVERFKNSNMLQP--PPMLRITGTG----NDIEILQRTGERLLKFAQSLGLRFQFHPLLL 264
L L+P PP+ R+TG G ++ + L G +L A+++ + F++ +
Sbjct: 291 LA--------LRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVA 342
Query: 265 --MNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRV 322
+ D S+ PS + E++AVN + LHKLL D L + + + P +
Sbjct: 343 NTLADLDASMLELRPSEI-----ESVAVNSVFELHKLLGRPGAIDKVLGV--VNQIKPEI 395
Query: 323 VTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIV 382
T+ E+E++HN P+FL RF E++ +Y +FDSLE P+ ++++ + +V+ G++I +V
Sbjct: 396 FTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGV--PSGQDKV-MSEVYLGKQICNVV 452
Query: 383 ATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNS 442
A +G +R ERHE W S G++ + A QA +LL L EGY+++ +
Sbjct: 453 ACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGC 512
Query: 443 LFLGWQNRALFSVSSW 458
L LGW R L + S+W
Sbjct: 513 LMLGWHTRPLIATSAW 528
Score = 43 (20.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 10/55 (18%), Positives = 26/55 (47%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+ + L++CAE + + + A L+ + + ++ ++ F AL+ R+
Sbjct: 167 VRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARRI 221
>TAIR|locus:2164783 [details] [associations]
symbol:PAT1 "AT5G48150" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0004871 "signal transducer activity" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009640 "photomorphogenesis"
evidence=IMP] Pfam:PF03514 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0009640
GO:GO:0004871 EMBL:AB023039 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:AF153443 EMBL:BT025326 EMBL:AK117483
IPI:IPI00517897 RefSeq:NP_199626.1 RefSeq:NP_974903.1
UniGene:At.7076 PRIDE:Q9LDL7 EnsemblPlants:AT5G48150.1
EnsemblPlants:AT5G48150.2 GeneID:834867 KEGG:ath:AT5G48150
GeneFarm:4233 TAIR:At5g48150 eggNOG:NOG287245 InParanoid:Q9LDL7
OMA:NSAHARG PhylomeDB:Q9LDL7 ProtClustDB:CLSN2686580
Genevestigator:Q9LDL7 Uniprot:Q9LDL7
Length = 490
Score = 438 (159.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 108/307 (35%), Positives = 168/307 (54%)
Query: 162 LNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNML 221
L ++ P+ +F +++AN AI E+++ + +HI+DF I G QW L+QA R
Sbjct: 200 LYEVCPYFKFGYMSANGAIAEAMKE-ENRVHIIDFQIGQGSQWVTLIQAFAARPGG---- 254
Query: 222 QPPPMLRITGTGNDIEILQR------TGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFY 275
PP +RITG + R G RL K A+ + F+F N SV+
Sbjct: 255 --PPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEF------NSVSVSVSEV 306
Query: 276 LPSALTILPDETLAVNCMLFLHKL----LKDHDTRDLRLFLHKIKALNPRVVTIAEREAS 331
P L + P E LAVN LH + + + RD RL L +K+L+P+VVT+ E+E++
Sbjct: 307 KPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD-RL-LRMVKSLSPKVVTLVEQESN 364
Query: 332 HNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKE 391
N F RF+E +++Y A+F+S++ TLP + ++R+ VEQ R++V I+A EG +R E
Sbjct: 365 TNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVE 424
Query: 392 RHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRA 451
RHE W G++ PLS S K LLR +Y S+ Y+L+ + +L+LGW +R
Sbjct: 425 RHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLR-NY-SDKYRLEERDGALYLGWMHRD 482
Query: 452 LFSVSSW 458
L + +W
Sbjct: 483 LVASCAW 489
Score = 71 (30.1 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 55 VGGLMNSPPAIHMRQL---LISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQF 111
+ G ++ AI R L L+SCA+ S+ D AH ++ L S G+ I+RL
Sbjct: 104 INGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYL 163
Query: 112 IRALSLRL 119
+ L +L
Sbjct: 164 LEGLVAQL 171
>TAIR|locus:2101694 [details] [associations]
symbol:AT3G50650 "AT3G50650" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003700 GO:GO:0006351 EMBL:AL132979
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000240374
ProtClustDB:CLSN2684429 EMBL:AK229252 EMBL:AF036304 IPI:IPI00542878
PIR:T46142 PIR:T51238 RefSeq:NP_190634.1 UniGene:At.42939
PaxDb:Q9SCR0 PRIDE:Q9SCR0 EnsemblPlants:AT3G50650.1 GeneID:824228
KEGG:ath:AT3G50650 GeneFarm:4248 TAIR:At3g50650 eggNOG:NOG329237
InParanoid:Q9SCR0 OMA:LIRIKES PhylomeDB:Q9SCR0
Genevestigator:Q9SCR0 Uniprot:Q9SCR0
Length = 542
Score = 463 (168.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 122/312 (39%), Positives = 169/312 (54%)
Query: 159 YLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNS 218
Y +LN P+ +F+HLTANQAILE+ +IHI+DF I G+QW L+QAL R
Sbjct: 243 YKTLNDACPYSKFAHLTANQAILEATNQSN-NIHIVDFGIFQGIQWSALLQALATRSSGK 301
Query: 219 NMLQPPPMLRITGT-----GNDI-EILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSV 272
P +RI+G G+ L TG RL FA L L F+F+P+L T +
Sbjct: 302 -----PTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFYPVL------TPI 350
Query: 273 AFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASH 332
S+ + PDE L VN ML L+KLL D + L ++LNPR+VT+ E E S
Sbjct: 351 QLLNGSSFRVDPDEVLVVNFMLELYKLL-DETATTVGTALRLARSLNPRIVTLGEYEVSL 409
Query: 333 NHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKE- 391
N F R ++ Y A+F+SLE L +S+ERL VE+V FGR I+++V ++ +N K
Sbjct: 410 NRVEFANRVKNSLRFYSAVFESLEPNLDRDSKERLRVERVLFGRRIMDLVRSDDDNNKPG 469
Query: 392 -RH---ERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQL-QVLNNSLFLG 446
R E + W +++ G+ V S YA+SQAKLLL + S Y L + + L
Sbjct: 470 TRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPGFISLA 529
Query: 447 WQNRALFSVSSW 458
W N L +VSSW
Sbjct: 530 WNNVPLLTVSSW 541
Score = 41 (19.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 63 PAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALS 116
P + Q + +++ + LI I + S GD I+R+ + F ALS
Sbjct: 169 PDFDLNQPIFKAIHDYARKPETKPDTLIRIKESVSES-GDPIQRVGYYFAEALS 221
>TAIR|locus:2201557 [details] [associations]
symbol:RGL1 "RGA-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;TAS] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA;TAS] [GO:0009938 "negative regulation of
gibberellic acid mediated signaling pathway" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IGI] [GO:0009723
"response to ethylene stimulus" evidence=IGI;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IGI;RCA] [GO:0042538
"hyperosmotic salinity response" evidence=IGI;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] [GO:2000377
"regulation of reactive oxygen species metabolic process"
evidence=IGI] [GO:0009863 "salicylic acid mediated signaling
pathway" evidence=IGI;RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=IGI;RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010325 "raffinose family oligosaccharide biosynthetic process"
evidence=RCA] [GO:0048444 "floral organ morphogenesis"
evidence=RCA] Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009737 GO:GO:0005634 GO:GO:0030154 GO:GO:0009723
GO:GO:0003700 GO:GO:0006351 GO:GO:0009908 GO:GO:0042538
GO:GO:2000377 EMBL:AC020665 GO:GO:0040029 GO:GO:0009867
GO:GO:0009863 GO:GO:0009740 HOGENOM:HOG000238577 KO:K14494
GO:GO:0009938 InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041
PROSITE:PS50985 EMBL:AJ224957 EMBL:AY048749 EMBL:AY070035
EMBL:AY096506 IPI:IPI00518407 PIR:G96688 RefSeq:NP_176809.1
UniGene:At.26400 UniGene:At.75607 ProteinModelPortal:Q9C8Y3
SMR:Q9C8Y3 IntAct:Q9C8Y3 STRING:Q9C8Y3 EnsemblPlants:AT1G66350.1
GeneID:842953 KEGG:ath:AT1G66350 GeneFarm:4239 TAIR:At1g66350
eggNOG:NOG314007 InParanoid:Q9C8Y3 OMA:TSAWRIN PhylomeDB:Q9C8Y3
ProtClustDB:CLSN2914366 Genevestigator:Q9C8Y3 GermOnline:AT1G66350
Uniprot:Q9C8Y3
Length = 511
Score = 452 (164.2 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 100/271 (36%), Positives = 159/271 (58%)
Query: 189 QSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248
+ +H++D + HG+QWP L+QAL R N PP R+TG G + +Q G +L +
Sbjct: 252 EKVHVIDLGLNHGLQWPALIQALALR-PNG-----PPDFRLTGIGYSLTDIQEVGWKLGQ 305
Query: 249 FAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPD-ETLAVNCMLFLHKLLKDHDTRD 307
A ++G+ F+F + L N ++ P L I P E++AVN + LH+LL + D
Sbjct: 306 LASTIGVNFEFKSIALNN-----LSDLKPEMLDIRPGLESVAVNSVFELHRLLAHPGSID 360
Query: 308 LRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERL 367
FL IK++ P ++T+ E+EA+HN +FL RF E++ +Y ++FDSLE PP S++R+
Sbjct: 361 K--FLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEG--PP-SQDRV 415
Query: 368 AVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRL 427
+ +++ GR+I+ +VA EGE+R ERHE + W G+ V + A QA +LL L
Sbjct: 416 -MSELFLGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLAL 474
Query: 428 HYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+ ++GY ++ L LGWQ R L + S+W
Sbjct: 475 YAGADGYNVEENEGCLLLGWQTRPLIATSAW 505
Score = 343 (125.8 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 79/205 (38%), Positives = 124/205 (60%)
Query: 167 PFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPM 226
P+++F+H TANQAILE ++ +H++D + HG+QWP L+QAL R N PP
Sbjct: 231 PYLKFAHFTANQAILEVFATAEK-VHVIDLGLNHGLQWPALIQALALR-PNG-----PPD 283
Query: 227 LRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPD- 285
R+TG G + +Q G +L + A ++G+ F+F + L N ++ P L I P
Sbjct: 284 FRLTGIGYSLTDIQEVGWKLGQLASTIGVNFEFKSIALNN-----LSDLKPEMLDIRPGL 338
Query: 286 ETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAV 345
E++AVN + LH+LL + D FL IK++ P ++T+ E+EA+HN +FL RF E++
Sbjct: 339 ESVAVNSVFELHRLLAHPGSIDK--FLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESL 396
Query: 346 DHYGAIFDSLEATLPPNSRERLAVE 370
+Y ++FDSLE PP S++R+ E
Sbjct: 397 HYYSSLFDSLEG--PP-SQDRVMSE 418
Score = 49 (22.3 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+ + L++CAE Q + A L+ + +S ++ ++ F L+ R+
Sbjct: 150 VRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRI 204
>TAIR|locus:2026982 [details] [associations]
symbol:SCL1 "AT1G21450" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] Pfam:PF03514 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
EMBL:AC015447 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:AF210731 EMBL:AY045833 EMBL:AY096626
EMBL:AY084492 EMBL:AF036300 IPI:IPI00538394 PIR:E86347 PIR:T51234
RefSeq:NP_173566.1 UniGene:At.14825 ProteinModelPortal:Q9SDQ3
STRING:Q9SDQ3 PaxDb:Q9SDQ3 PRIDE:Q9SDQ3 EnsemblPlants:AT1G21450.1
GeneID:838743 KEGG:ath:AT1G21450 GeneFarm:4232 TAIR:At1g21450
eggNOG:NOG324880 InParanoid:Q9SDQ3 OMA:SINDEWA PhylomeDB:Q9SDQ3
ProtClustDB:CLSN2913658 Genevestigator:Q9SDQ3 Uniprot:Q9SDQ3
Length = 593
Score = 423 (154.0 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 105/306 (34%), Positives = 170/306 (55%)
Query: 162 LNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNML 221
L ++ P +F L AN AILE+++ G++ +HI+DFDI G Q+ L++++ E +
Sbjct: 302 LFEVCPCFKFGFLAANGAILEAIK-GEEEVHIIDFDINQGNQYMTLIRSIAE------LP 354
Query: 222 QPPPMLRITGTGNDIEILQRT-------GERLLKFAQSLGLRFQFHPLLLMNDDPTSVAF 274
P LR+TG +D E +QR+ G RL + A+ G+ F+F + P+ +
Sbjct: 355 GKRPRLRLTGI-DDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAM------PSKTSI 407
Query: 275 YLPSALTILPDETLAVNCMLFLHKLLKDHDTR-DLR-LFLHKIKALNPRVVTIAEREASH 332
PS L P ETL VN LH + + T + R LH +K+LNP++VT+ E++ +
Sbjct: 408 VSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNT 467
Query: 333 NHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKER 392
N F RF+EA ++Y A+F+SL+ TLP S+ER+ VE+ R+IV IVA EGE R ER
Sbjct: 468 NTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIER 527
Query: 393 HERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRAL 452
+E W + G++ P+S + + L++ Y ++ Y+L+ L W+ ++L
Sbjct: 528 YEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNK-YKLKEEMGELHFCWEEKSL 586
Query: 453 FSVSSW 458
S+W
Sbjct: 587 IVASAW 592
Score = 66 (28.3 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 68 RQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+Q+LISCA S+ A +++ L S GD +R+ + L+ R+
Sbjct: 223 KQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARM 274
>TAIR|locus:2008076 [details] [associations]
symbol:SCL5 "AT1G50600" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005829 "cytosol" evidence=IDA] Pfam:PF03514
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 EMBL:AC079279 EMBL:AC012561
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
eggNOG:NOG287245 EMBL:AY034929 EMBL:AY039611 EMBL:BT000883
EMBL:AF036302 IPI:IPI00519165 PIR:E96542 PIR:T51236
RefSeq:NP_175475.2 UniGene:At.14827 STRING:Q8H125 PaxDb:Q8H125
PRIDE:Q8H125 EnsemblPlants:AT1G50600.1 GeneID:841482
KEGG:ath:AT1G50600 GeneFarm:4229 TAIR:At1g50600 InParanoid:Q8H125
OMA:REERHEP PhylomeDB:Q8H125 ProtClustDB:CLSN2918355
ArrayExpress:Q8H125 Genevestigator:Q8H125 Uniprot:Q8H125
Length = 597
Score = 419 (152.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 112/307 (36%), Positives = 163/307 (53%)
Query: 162 LNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNML 221
L + P+ +F + +AN AI E+++ + +HI+DF I G QW L++AL R
Sbjct: 307 LYEACPYFKFGYESANGAIAEAVK-NESFVHIIDFQISQGGQWVSLIRALGARPGG---- 361
Query: 222 QPPPMLRITGTGNDIEILQR------TGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFY 275
PP +RITG + R G+RL K A+ G+ F+FH L T V
Sbjct: 362 --PPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCC---TEVEI- 415
Query: 276 LPSALTILPDETLAVNCMLFLHKLLKDHDT----RDLRLFLHKIKALNPRVVTIAEREAS 331
L + E LAVN L LH + + T RD RL L +K L+P VVT+ E+EA+
Sbjct: 416 --EKLGVRNGEALAVNFPLVLHHMPDESVTVENHRD-RL-LRLVKHLSPNVVTLVEQEAN 471
Query: 332 HNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKE 391
N FL RFVE ++HY A+F+S++ L + +ER+ VEQ RE+V ++A EG R+E
Sbjct: 472 TNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREE 531
Query: 392 RHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRA 451
RHE W G+ PLS Y + K LL + SE Y L+ + +L+LGW+N+
Sbjct: 532 RHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESY--SEKYTLEERDGALYLGWKNQP 589
Query: 452 LFSVSSW 458
L + +W
Sbjct: 590 LITSCAW 596
Score = 52 (23.4 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
++ +L CA+ D LIS L S G+ ++RL + L RL
Sbjct: 227 LKGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARL 279
>TAIR|locus:2044973 [details] [associations]
symbol:SCL21 "AT2G04890" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
Pfam:PF03514 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003700 GO:GO:0006351 EMBL:AC006955 EMBL:AC007211
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
EMBL:AF210732 EMBL:AK175210 EMBL:AK175990 EMBL:AK176099
EMBL:AK221099 EMBL:BT026455 IPI:IPI00534889 PIR:G84462
RefSeq:NP_178566.1 UniGene:At.48419 UniGene:At.71110 IntAct:Q9S7H5
EnsemblPlants:AT2G04890.1 GeneID:815036 KEGG:ath:AT2G04890
GeneFarm:4231 TAIR:At2g04890 eggNOG:NOG292869 InParanoid:Q9S7H5
OMA:HKERINI PhylomeDB:Q9S7H5 ProtClustDB:CLSN2912915
Genevestigator:Q9S7H5 Uniprot:Q9S7H5
Length = 413
Score = 421 (153.3 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 106/301 (35%), Positives = 166/301 (55%)
Query: 162 LNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNML 221
L+++ P+ +F +++AN AI E+++ ++ IHI+DF I G QW L+QA R +
Sbjct: 130 LHEVCPYFKFGYMSANGAIAEAMK-DEERIHIIDFQIGQGSQWIALIQAFAARPGGA--- 185
Query: 222 QPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALT 281
P +RITG G D +L +RL K A+ + F+F+ + P S + + L
Sbjct: 186 ---PNIRITGVG-DGSVLVTVKKRLEKLAKKFDVPFRFNAV----SRP-SCEVEVEN-LD 235
Query: 282 ILPDETLAVNCMLFLHKLLKD----HDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLF 337
+ E L VN LH L + + RD RL L +K+L+P+VVT+ E+E + N F
Sbjct: 236 VRDGEALGVNFAYMLHHLPDESVSMENHRD-RL-LRMVKSLSPKVVTLVEQECNTNTSPF 293
Query: 338 LQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFD 397
L RF+E + +Y A+F+S++ LP N +ER+ +EQ R++V I+A EG R ERHE
Sbjct: 294 LPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLG 353
Query: 398 SWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSS 457
W+ G+ PLS + + LLR Y S GY ++ + +L+LGW +R L S +
Sbjct: 354 KWKSRFSMAGFEPYPLSSIISATIRALLR-DY-SNGYAIEERDGALYLGWMDRILVSSCA 411
Query: 458 W 458
W
Sbjct: 412 W 412
Score = 49 (22.3 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
++ +L++CA+ S+ + A + L S G+ I+RL + L RL
Sbjct: 50 LKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARL 102
>TAIR|locus:2165685 [details] [associations]
symbol:AT5G41920 "AT5G41920" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351 EMBL:AB017067
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
EMBL:BT029760 IPI:IPI00535918 RefSeq:NP_199007.1 UniGene:At.67848
UniGene:At.72727 IntAct:Q9FHZ1 DNASU:834197
EnsemblPlants:AT5G41920.1 GeneID:834197 KEGG:ath:AT5G41920
GeneFarm:4246 TAIR:At5g41920 eggNOG:NOG72098 InParanoid:Q9FHZ1
OMA:PWKGYTL PhylomeDB:Q9FHZ1 ProtClustDB:CLSN2686419
Genevestigator:Q9FHZ1 Uniprot:Q9FHZ1
Length = 405
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 115/303 (37%), Positives = 162/303 (53%)
Query: 157 SCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFK 216
S + N ++P I+FSH TANQAI ++L G+ S+HI+D D+M G+QWP L L R +
Sbjct: 119 SALQTYNSVSPLIKFSHFTANQAIFQALD-GEDSVHIIDLDVMQGLQWPALFHILASRPR 177
Query: 217 NSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYL 276
+ RITG G+ ++L TG RL FA SL L F+FHP+ + +
Sbjct: 178 KLRSI------RITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLID----- 226
Query: 277 PSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHP- 335
PS L E + V+ M H+L D +L L ++ L P ++T+ E+E S++
Sbjct: 227 PSQLATRQGEAVVVHWMQ--HRLY-DVTGNNLET-LEILRRLKPNLITVVEQELSYDDGG 282
Query: 336 LFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHER 395
FL RFVEA+ +Y A+FD+L L S ER VEQ+ G EI IVA G RK
Sbjct: 283 SFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGGRRKRM--- 339
Query: 396 FDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSV 455
W+ L G+ V L G +QA LLL + P GY L N +L LGW++ +L +
Sbjct: 340 --KWKEELSRVGFRPVSLRGNPATQAGLLLGM-LPWNGYTLVEENGTLRLGWKDLSLLTA 396
Query: 456 SSW 458
S+W
Sbjct: 397 SAW 399
Score = 203 (76.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 53/151 (35%), Positives = 75/151 (49%)
Query: 64 AIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHH 123
AI + LL+ CAE + A L+S +S SP+G S ER+V F +AL R+ +
Sbjct: 37 AIKLLSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSY 96
Query: 124 AXXXXXXXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILES 183
+ALQ+ Y N ++P I+FSH TANQAI ++
Sbjct: 97 LSGACSPLSEKPLTVVQSQKIF-------SALQT-Y---NSVSPLIKFSHFTANQAIFQA 145
Query: 184 LQVGQQSIHILDFDIMHGVQWPPLMQALVER 214
L G+ S+HI+D D+M G+QWP L L R
Sbjct: 146 LD-GEDSVHIIDLDVMQGLQWPALFHILASR 175
>TAIR|locus:2132482 [details] [associations]
symbol:AT4G08250 "AT4G08250" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003700 GO:GO:0006351
InterPro:IPR005202 PROSITE:PS50985 EMBL:AL080252 EMBL:AL161510
EMBL:BT011797 IPI:IPI00529829 PIR:T10552 RefSeq:NP_192565.1
UniGene:At.50325 DNASU:826375 EnsemblPlants:AT4G08250.1
GeneID:826375 KEGG:ath:AT4G08250 GeneFarm:4263 TAIR:At4g08250
eggNOG:NOG320032 HOGENOM:HOG000239937 InParanoid:Q9SUF5 OMA:SLEAGFP
PhylomeDB:Q9SUF5 ProtClustDB:CLSN2685964 Genevestigator:Q9SUF5
Uniprot:Q9SUF5
Length = 483
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 110/313 (35%), Positives = 168/313 (53%)
Query: 151 DRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQA 210
D+ + S + L ++P++ F +LTA QAILE+++ ++ IHI+D+DI GVQW LMQA
Sbjct: 176 DQADVISAFELLQNMSPYVNFGYLTATQAILEAVKY-ERRIHIVDYDINEGVQWASLMQA 234
Query: 211 LVERFK--NSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDD 268
LV R ++ L+ + R T + +Q TG RL FA S+G F + L D
Sbjct: 235 LVSRNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFADSIGQPFSYQHCKL---D 291
Query: 269 PTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRL-FLHKIKALNPRVVTIAE 327
+ + S+L ++ E + +NCML L + H T + FL + K LNP++VT+
Sbjct: 292 TNA---FSTSSLKLVRGEAVVINCMLHLPRF--SHQTPSSVISFLSEAKTLNPKLVTLVH 346
Query: 328 REAS-HNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEG 386
E + FL RF++ + + AIFDSLEA L + R VE+V+ G + +
Sbjct: 347 EEVGLMGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANPARGFVERVFIGPWVANWLTRIT 406
Query: 387 ENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLN-NSLFL 445
N E E F SW L + G+ + +S QAKLLL L ++G++++ L N L L
Sbjct: 407 ANDAEV-ESFASWPQWLETNGFKPLEVSFTNRCQAKLLLSLF--NDGFRVEELGQNGLVL 463
Query: 446 GWQNRALFSVSSW 458
GW++R L S S W
Sbjct: 464 GWKSRRLVSASFW 476
>TAIR|locus:2075155 [details] [associations]
symbol:AT3G46600 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016671 "oxidoreductase
activity, acting on a sulfur group of donors, disulfide as
acceptor" evidence=IEA] [GO:0019538 "protein metabolic process"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0035556 "intracellular signal transduction" evidence=RCA]
Pfam:PF03514 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003700 GO:GO:0006351 GO:GO:0010200 EMBL:AL133314
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000238576
ProtClustDB:CLSN2685117 EMBL:AK226419 EMBL:AY087418 IPI:IPI00537144
PIR:T45597 RefSeq:NP_190244.1 UniGene:At.595 STRING:Q9SNB8
EnsemblPlants:AT3G46600.1 GeneID:823813 KEGG:ath:AT3G46600
GeneFarm:4254 TAIR:At3g46600 eggNOG:NOG304481 InParanoid:Q9SNB8
OMA:FNESESQ PhylomeDB:Q9SNB8 Genevestigator:Q9SNB8 Uniprot:Q9SNB8
Length = 583
Score = 337 (123.7 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 94/310 (30%), Positives = 152/310 (49%)
Query: 159 YLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNS 218
Y Q P + + TAN+ I E L ++HI+DF I++G QWP L+QAL +R
Sbjct: 285 YKGFVQACPTLIMCYFTANRTINE-LASKATTLHIIDFGILYGFQWPCLIQALSKRDIG- 342
Query: 219 NMLQPPPMLRITG-----TG-NDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSV 272
PP+LR+TG +G E ++ TG RL +F + F++ + N + ++
Sbjct: 343 -----PPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYS-FIAKNWENITL 396
Query: 273 AFYLPSALTILPDETLAVNCMLFLH----KLLKDHDTRDLRLFLHKIKALNPRVVTIAER 328
L I ET VNC+L L + + + RD L L + +NP + AE
Sbjct: 397 -----DDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKL--FRDINPDLFVFAEI 449
Query: 329 EASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGEN 388
++N P FL RF EA+ H ++FD E TL + R VE+ R+ + ++A EG
Sbjct: 450 NGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSE 509
Query: 389 RKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQ 448
R R E + W++ + G+ LS + K +++ Y + + + N+ +F GW+
Sbjct: 510 RFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKD-FVIDNDNHWMFQGWK 568
Query: 449 NRALFSVSSW 458
R L++VS W
Sbjct: 569 GRVLYAVSCW 578
Score = 85 (35.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 61 SPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
S + MR LL+ CA+ + D A + + +SS +GD+ +RL + F AL R+
Sbjct: 203 SDQPVDMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARI 261
>TAIR|locus:2025032 [details] [associations]
symbol:AT1G07520 "AT1G07520" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0035556 "intracellular signal transduction" evidence=RCA]
Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0006355 GO:GO:0006351 GO:GO:0010200 EMBL:AC022464
InterPro:IPR005202 PROSITE:PS50985 PIR:T51232 eggNOG:NOG319005
EMBL:AB493440 EMBL:BX839686 IPI:IPI00525480 IPI:IPI01019456
RefSeq:NP_172232.1 UniGene:At.63938 UniGene:At.71785 STRING:Q3EDH0
PRIDE:Q3EDH0 GeneID:837266 KEGG:ath:AT1G07520 GeneFarm:4253
TAIR:At1g07520 InParanoid:Q3EDH0 OMA:VRIENEV Genevestigator:Q3EDH0
Uniprot:Q3EDH0
Length = 695
Score = 380 (138.8 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 116/406 (28%), Positives = 183/406 (45%)
Query: 64 AIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHH 123
A+ R LL CA+ S D A L+ + SP GD+ +RL H F AL RL
Sbjct: 312 AVDFRTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLE--- 368
Query: 124 AXXXXXXXXXXXXXXXXXXXXXXXXXXDRNALQ--SCYLSLNQITPFIRFSHLTANQAIL 181
R A Q Y +PF+ + +N+ IL
Sbjct: 369 ----------GSTGTMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMIL 418
Query: 182 ESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGT-----G-ND 235
++ + +HI+DF I++G QWP +Q L + N + + LRITG G
Sbjct: 419 DAAK-DASVLHIVDFGILYGFQWPMFIQHLSK--SNPGLRK----LRITGIEIPQHGLRP 471
Query: 236 IEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCML- 294
E +Q TG RL ++ + G+ F+++ + N + + + I P+E LAVN +L
Sbjct: 472 TERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEF-----KIRPNEVLAVNAVLR 526
Query: 295 F--LHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIF 352
F L ++ + FL I+ +NP V + S N P F RF EA+ HY A+F
Sbjct: 527 FKNLRDVIPGEEDCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALF 586
Query: 353 DSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVP 412
D ATL + ER+ E ++GRE++ ++A EG +R ER E + W++ + G+ P
Sbjct: 587 DLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKP 646
Query: 413 LSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+ + + ++ + + L +N GW+ R LFS S W
Sbjct: 647 VEAELVQLFREKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCW 692
Score = 43 (20.2 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 4 SLNNTTSSRHDQQQEEDPL 22
+++ T + H++++EED L
Sbjct: 233 AISKTRKNHHEREEEEDDL 251
>TAIR|locus:2040701 [details] [associations]
symbol:AT2G37650 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] EMBL:AC004684 Pfam:PF03514 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003700 GO:GO:0006351
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000238576
eggNOG:NOG319005 EMBL:AF036306 IPI:IPI00536640 PIR:T02531
PIR:T51240 RefSeq:NP_181301.1 UniGene:At.26205 UniGene:At.66411
PaxDb:O80933 PRIDE:O80933 EnsemblPlants:AT2G37650.1 GeneID:818342
KEGG:ath:AT2G37650 GeneFarm:4256 TAIR:At2g37650 InParanoid:O80933
OMA:WERVERP PhylomeDB:O80933 ProtClustDB:CLSN2912903
Genevestigator:O80933 Uniprot:O80933
Length = 718
Score = 315 (115.9 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 92/303 (30%), Positives = 145/303 (47%)
Query: 167 PFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPM 226
PF + S+ N+ I + L Q +H++DF I++G QWP L+ RF + P
Sbjct: 429 PFRKLSYFITNKTIRD-LVGNSQRVHVIDFGILYGFQWP----TLIHRFS----MYGSPK 479
Query: 227 LRITGT-----G-NDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSAL 280
+RITG G + ++ TG+RL +A+ G+ F++ + D A L L
Sbjct: 480 VRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWD-----AIQLED-L 533
Query: 281 TILPDETLAVNCMLF---LH-KLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPL 336
I DE VNC+ LH + +K RD L L I +NP + ++N P
Sbjct: 534 DIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNL--IGKINPDLFVFGIVNGAYNAPF 591
Query: 337 FLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERF 396
F+ RF EA+ H+ +IFD LE +P ER+ +E FGRE + ++A EG R ER E +
Sbjct: 592 FVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETY 651
Query: 397 DSWEMILRSCGYSNVPLSGYALSQAKLLLRLH-YPSEGYQLQVLNNSLFLGWQNRALFSV 455
W + G VP + + L ++H + + + + N L GW+ R + ++
Sbjct: 652 KQWHVRAMRSGLVQVPFDPSIMKTS--LHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMAL 709
Query: 456 SSW 458
S W
Sbjct: 710 SVW 712
Score = 103 (41.3 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 56 GGLMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRAL 115
GG + +R LLI CA+ + D A +L+ + +S+P+GD +RL H F L
Sbjct: 333 GGQNGKKEVVDLRSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGL 392
Query: 116 SLRL 119
RL
Sbjct: 393 EARL 396
>TAIR|locus:2120106 [details] [associations]
symbol:SHR "AT4G37650" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008356 "asymmetric cell division"
evidence=IMP] [GO:0009956 "radial pattern formation" evidence=IMP]
[GO:0032350 "regulation of hormone metabolic process" evidence=NAS]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0055072 "iron ion
homeostasis" evidence=IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] Pfam:PF03514 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 GO:GO:0007049 EMBL:AL035605 EMBL:AL161591
GO:GO:0048366 GO:GO:0008356 GO:GO:0055072 GO:GO:0009956
GO:GO:0032350 InterPro:IPR005202 PROSITE:PS50985 EMBL:AF233752
EMBL:BT033026 EMBL:AY074547 IPI:IPI00525426 PIR:T04722
RefSeq:NP_195480.1 UniGene:At.2816 UniGene:At.71893 IntAct:Q9SZF7
STRING:Q9SZF7 PaxDb:Q9SZF7 PRIDE:Q9SZF7 EnsemblPlants:AT4G37650.1
GeneID:829919 KEGG:ath:AT4G37650 GeneFarm:4260 TAIR:At4g37650
eggNOG:NOG301144 HOGENOM:HOG000078767 InParanoid:Q9SZF7 OMA:EIGNRME
PhylomeDB:Q9SZF7 ProtClustDB:CLSN2685807 Genevestigator:Q9SZF7
Uniprot:Q9SZF7
Length = 531
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 111/401 (27%), Positives = 187/401 (46%)
Query: 70 LLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAXXXXX 129
+L+ A FS D + A +++ L+ SSPYGD+ ++L F++AL R+
Sbjct: 146 VLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMT--------- 196
Query: 130 XXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQ 189
+ + L +++P+ F H+ AN AILE++ G+
Sbjct: 197 -GSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVD-GEA 254
Query: 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDI----EILQRTGER 245
IHI+D QWP L++AL R ++ L+ ++ ND +++ G R
Sbjct: 255 KIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNR 314
Query: 246 LLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDT 305
+ KFA+ +G+ F+F+ + + D S F L + L + PDE LA+NC+ +H +
Sbjct: 315 MEKFARLMGVPFKFNIIHHVGD--LS-EFDL-NELDVKPDEVLAINCVGAMHGIASRGSP 370
Query: 306 RDLRLFLHKIKALNPRVVTIAEREAS-------HNHPLFLQRFVEAVDHYGAIFDSLEAT 358
RD + + L PR+VT+ E EA FL+ F E + + F+S E +
Sbjct: 371 RDA--VISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEES 428
Query: 359 LPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYAL 418
P S ERL +E+ GR IV++VA E + ER E W +R+ G+ V S
Sbjct: 429 FPRTSNERLMLERA-AGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYSDEVA 487
Query: 419 SQAKLLLRLHYPSEGYQLQVLNNS-LFLGWQNRALFSVSSW 458
+ LLR + +Q + + +FL W+++ + S+W
Sbjct: 488 DDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAW 528
>TAIR|locus:2080345 [details] [associations]
symbol:SCR "SCARECROW" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0009630
"gravitropism" evidence=IMP] [GO:0009956 "radial pattern formation"
evidence=IMP] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042803 "protein homodimerization
activity" evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0051457 "maintenance of protein location in
nucleus" evidence=IMP] [GO:0008356 "asymmetric cell division"
evidence=IMP] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
GO:GO:0009630 GO:GO:0008356 GO:GO:0051457 EMBL:AL132957
GO:GO:0010103 GO:GO:0009956 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:U62798 EMBL:AY056315 EMBL:AY080840
EMBL:AY113991 IPI:IPI00524888 PIR:T47581 PIR:T51244
RefSeq:NP_190990.1 UniGene:At.71814 UniGene:At.932 IntAct:Q9M384
STRING:Q9M384 EnsemblPlants:AT3G54220.1 GeneID:824589
KEGG:ath:AT3G54220 GeneFarm:4242 TAIR:At3g54220 eggNOG:NOG311437
InParanoid:Q9M384 OMA:QERENSS PhylomeDB:Q9M384
ProtClustDB:CLSN2915643 Genevestigator:Q9M384 Uniprot:Q9M384
Length = 653
Score = 362 (132.5 bits), Expect = 1.6e-32, P = 1.6e-32
Identities = 91/235 (38%), Positives = 131/235 (55%)
Query: 224 PPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTIL 283
PP +R+TG G +E LQ TG+RL FA LGL F+F PL V L +
Sbjct: 428 PPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLA------EKVGNLDTERLNVR 481
Query: 284 PDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVE 343
E +AV+ +L L D D L ++ L P+VVT+ E++ SH FL RFVE
Sbjct: 482 KREAVAVH---WLQHSLYDVTGSDAHT-LWLLQRLAPKVVTVVEQDLSHAGS-FLGRFVE 536
Query: 344 AVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMIL 403
A+ +Y A+FDSL A+ S ER VEQ +EI ++A G +R +F+SW +
Sbjct: 537 AIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGE-VKFESWREKM 595
Query: 404 RSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+ CG+ + L+G A +QA LLL + +PS+GY L N +L LGW++ +L + S+W
Sbjct: 596 QQCGFKGISLAGNAATQATLLLGM-FPSDGYTLVDDNGTLKLGWKDLSLLTASAW 649
Score = 307 (113.1 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 90/268 (33%), Positives = 129/268 (48%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHA 124
+H+ LL+ CAE S + A++L+ +S S+PYG S +R+ F A+S RL L+
Sbjct: 288 LHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARL-LNSC 346
Query: 125 XXXXXXXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILESL 184
+ S + N I+P ++FSH TANQAI E+
Sbjct: 347 LGIYAALPSRWMPQTHSLK-----------MVSAFQVFNGISPLVKFSHFTANQAIQEAF 395
Query: 185 QVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGE 244
+ + S+HI+D DIM G+QWP L L R PP +R+TG G +E LQ TG+
Sbjct: 396 EK-EDSVHIIDLDIMQGLQWPGLFHILASRPGG------PPHVRLTGLGTSMEALQATGK 448
Query: 245 RLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHD 304
RL FA LGL F+F PL V L + E +AV+ +L L D
Sbjct: 449 RLSDFADKLGLPFEFCPLA------EKVGNLDTERLNVRKREAVAVH---WLQHSLYDVT 499
Query: 305 TRDLRLFLHKIKALNPRVVTIAEREASH 332
D L ++ L P+VVT+ E++ SH
Sbjct: 500 GSDAHT-LWLLQRLAPKVVTVVEQDLSH 526
>TAIR|locus:2148293 [details] [associations]
symbol:AT5G59450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010200 "response to chitin" evidence=IEP;RCA]
Pfam:PF03514 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003700 GO:GO:0006351 GO:GO:0010200 EMBL:AB025604
InterPro:IPR005202 PROSITE:PS50985 EMBL:AY035001 EMBL:AY062942
EMBL:AF036307 IPI:IPI00541926 PIR:T51233 RefSeq:NP_200753.1
UniGene:At.29225 UniGene:At.63919 UniGene:At.72775 STRING:Q9LTI5
EnsemblPlants:AT5G59450.1 GeneID:836064 KEGG:ath:AT5G59450
GeneFarm:4255 TAIR:At5g59450 eggNOG:NOG254902 HOGENOM:HOG000238576
InParanoid:Q9LTI5 OMA:KPATISK PhylomeDB:Q9LTI5
ProtClustDB:CLSN2685117 Genevestigator:Q9LTI5 Uniprot:Q9LTI5
Length = 610
Score = 309 (113.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 87/307 (28%), Positives = 146/307 (47%)
Query: 167 PFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPM 226
P + AN++I E L + +HI+DF +++G QWP L++AL +R PPM
Sbjct: 310 PIYVTDYFAANKSIYE-LAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGG------PPM 362
Query: 227 LRITG-----TG-NDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSAL 280
LR+TG G + ++ TG RL +F + F+F+ + + T L
Sbjct: 363 LRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNFIAKKWETITL------DEL 416
Query: 281 TILPDETLAVNCMLFLHKLLKDHDT-------RDLRLFLHKIKALNPRVVTIAEREASHN 333
I P ET VNC +H+L D RD L L + +NP + AE +N
Sbjct: 417 MINPGETTVVNC---IHRLQYTPDETVSLDSPRDTVLKL--FRDINPDLFVFAEINGMYN 471
Query: 334 HPLFLQRFVEAVDHYGAIFDSLEATLPPNS--RERLAVEQVWFGREIVEIVATEGENRKE 391
P F+ RF EA+ HY ++FD + T+ + R +E+ R+ + +++ EG R
Sbjct: 472 SPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFA 531
Query: 392 RHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRA 451
R E + W + + G+ +S + +AK ++R Y + + + NN + GW+ R
Sbjct: 532 RPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRD-FVIDSDNNWMLQGWKGRV 590
Query: 452 LFSVSSW 458
+++ S W
Sbjct: 591 IYAFSCW 597
Score = 76 (31.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 65 IHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
+ +R LL CA+ + D A + + A+SS GD +RL F AL R+
Sbjct: 222 VDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARI 276
>TAIR|locus:2184625 [details] [associations]
symbol:SCL8 "AT5G52510" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
Pfam:PF03514 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351
InterPro:IPR005202 PROSITE:PS50985 EMBL:AP000378 EMBL:AF036305
EMBL:AY099686 EMBL:AY128868 IPI:IPI00531227 PIR:T51239
RefSeq:NP_200064.3 UniGene:At.22412 UniGene:At.71617 STRING:Q9FYR7
PRIDE:Q9FYR7 EnsemblPlants:AT5G52510.1 GeneID:835327
KEGG:ath:AT5G52510 GeneFarm:4234 TAIR:At5g52510 eggNOG:NOG240925
HOGENOM:HOG000239354 InParanoid:Q9FYR7 OMA:PGAPWRD PhylomeDB:Q9FYR7
ProtClustDB:CLSN2680518 Genevestigator:Q9FYR7 Uniprot:Q9FYR7
Length = 640
Score = 330 (121.2 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 99/313 (31%), Positives = 156/313 (49%)
Query: 162 LNQITPFIRFSHLTANQAILESLQV---GQQSIHILDFDIMHGVQWPPLMQALVERFKNS 218
L +++P + AN AIL++ G H++DFDI G Q+ L++ L R
Sbjct: 336 LYELSPCFKLGFEAANLAILDAADNNDGGMMIPHVIDFDIGEGGQYVNLLRTLSTRRNGK 395
Query: 219 NMLQPPPMLRITGTGNDI----------EILQRTGERLLKFAQSLGLRFQFHPLLLMNDD 268
+ Q P+++IT N++ E L+ G+ L + LG+ F+ + +
Sbjct: 396 SQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLG 455
Query: 269 PTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHD-TRDLR-LFLHKIKALNPRVVTIA 326
+ +L PDETLAVN L+++ + T + R L ++K L PRVVT+
Sbjct: 456 DLN-----RESLGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLV 510
Query: 327 EREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEG 386
E+E + N FL R E+ YGA+ +S+E+T+P + +R VE+ GR++V VA EG
Sbjct: 511 EQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEE-GIGRKLVNAVACEG 569
Query: 387 ENRKERHERFDSWEMILRSCGYSNVPLSG-YALSQAKLLLRLHYPSEGYQLQVLNNSLFL 445
+R ER E F W M + G+ +PLS A S R+H P G+ ++ N +
Sbjct: 570 IDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRGNRVH-P--GFTVKEDNGGVCF 626
Query: 446 GWQNRALFSVSSW 458
GW RAL S+W
Sbjct: 627 GWMGRALTVASAW 639
Score = 39 (18.8 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 RQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRL 119
RQ ++ A ++ A +++ +S + +S E+LV + AL R+
Sbjct: 266 RQTVMEIATAIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI 317
>TAIR|locus:2025022 [details] [associations]
symbol:SCL14 "SCARECROW-like 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009410 "response to xenobiotic stimulus" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0005634 GO:GO:0045893 GO:GO:0003700
GO:GO:0006351 GO:GO:0009410 EMBL:AC022464 InterPro:IPR005202
PROSITE:PS50985 HOGENOM:HOG000238576 EMBL:AF036309 IPI:IPI00525012
PIR:T51232 RefSeq:NP_172233.1 UniGene:At.21921 STRING:Q9XE58
PaxDb:Q9XE58 PRIDE:Q9XE58 EnsemblPlants:AT1G07530.1 GeneID:837267
KEGG:ath:AT1G07530 GeneFarm:4250 TAIR:At1g07530 eggNOG:NOG319005
OMA:HEDFVVD PhylomeDB:Q9XE58 Genevestigator:Q9XE58 Uniprot:Q9XE58
Length = 769
Score = 327 (120.2 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 94/310 (30%), Positives = 146/310 (47%)
Query: 159 YLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNS 218
Y + + PF + + + AN +++ +IHI+DF I +G QWP AL+ R S
Sbjct: 470 YQTYMSVCPFKKAAIIFANHSMMR-FTANANTIHIIDFGISYGFQWP----ALIHRLSLS 524
Query: 219 NMLQPPPMLRITGT-----G-NDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSV 272
P LRITG G E +Q TG RL ++ Q + F+++ + + V
Sbjct: 525 RP-GGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIA-QKWETIQV 582
Query: 273 AFYLPSALTILPDETLAVNCMLFLHKLLKD----HDTRDLRLFLHKIKALNPRVVTIAER 328
L + E + VN + LL + + RD L L I+ +NP V A
Sbjct: 583 -----EDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKL--IRKINPNVFIPAIL 635
Query: 329 EASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGEN 388
++N P F+ RF EA+ HY A+FD ++ L RL E+ ++GREIV +VA EG
Sbjct: 636 SGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTE 695
Query: 389 RKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQ 448
R ER E + W+ L G+ +PL + KL + Y + + + N L GW+
Sbjct: 696 RVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGY-DKNFDVDQNGNWLLQGWK 754
Query: 449 NRALFSVSSW 458
R +++ S W
Sbjct: 755 GRIVYASSLW 764
Score = 157 (60.3 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 51/198 (25%), Positives = 85/198 (42%)
Query: 67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAXX 126
+R LL+ CA+ S D A+ ++ + +SSP G+ ERL H F +L RL
Sbjct: 393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARL------- 445
Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQV 186
D Y+S + PF + + + AN +++
Sbjct: 446 -----AGTGTQIYTALSSKKTSAADMLKAYQTYMS---VCPFKKAAIIFANHSMMR-FTA 496
Query: 187 GQQSIHILDFDIMHGVQWPPLMQAL-VERFKNSNMLQPPPMLRITGTG-NDIEILQRTGE 244
+IHI+DF I +G QWP L+ L + R S L+ + + G E +Q TG
Sbjct: 497 NANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITG-IELPQRGFRPAEGVQETGH 555
Query: 245 RLLKFAQSLGLRFQFHPL 262
RL ++ Q + F+++ +
Sbjct: 556 RLARYCQRHNVPFEYNAI 573
>TAIR|locus:2083073 [details] [associations]
symbol:AT3G49950 "AT3G49950" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003700 GO:GO:0006351 EMBL:AL132978
InterPro:IPR005202 PROSITE:PS50985 eggNOG:NOG309215 EMBL:BT012553
EMBL:AK226623 IPI:IPI00534186 PIR:T45848 RefSeq:NP_190564.1
UniGene:At.50260 EnsemblPlants:AT3G49950.1 GeneID:824157
KEGG:ath:AT3G49950 GeneFarm:4259 TAIR:At3g49950
HOGENOM:HOG000241523 InParanoid:Q9SN22 OMA:MSMDFRV PhylomeDB:Q9SN22
ProtClustDB:CLSN2684384 Genevestigator:Q9SN22 Uniprot:Q9SN22
Length = 410
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 107/406 (26%), Positives = 179/406 (44%)
Query: 67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAXX 126
M QLL+ CA D + H+++ +L+ + P GDS +RL F+RAL L A
Sbjct: 27 MEQLLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRAL-----LSRAVS 81
Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQV 186
+ A ++ L TP+ RF + AN AIL +++
Sbjct: 82 KTPTLSSTISFLPQADELHRFSVVELAA----FVDL---TPWHRFGFIAANAAILTAVE- 133
Query: 187 GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGND------IEI-L 239
G ++HI+D + H +Q P L+ A+ R +PPP+L++T + I I
Sbjct: 134 GYSTVHIVDLSLTHCMQIPTLIDAMASRLN-----KPPPLLKLTVVSSSDHFPPFINISY 188
Query: 240 QRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILP---DETLAVNCMLFL 296
+ G +L+ FA + + +F + D S L L I P +E L VNC + L
Sbjct: 189 EELGSKLVNFATTRNITMEFTIVPSTYSDGFSS---LLQQLRIYPSSFNEALVVNCHMML 245
Query: 297 HKLLKD---HDTRDLR-LFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIF 352
+ ++ + LR +FL ++++LNPR+VT+ E + + R A +++ F
Sbjct: 246 RYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLKSAFNYFWIPF 305
Query: 353 DSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVP 412
D+ + T R E W +I +VA EG R ER E W +R + V
Sbjct: 306 DTTD-TFMSEQRRWYEAEISW---KIENVVAKEGAERVERTETKRRWIERMREAEFGGVR 361
Query: 413 LSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
+ A++ K +L H G + + + SL L W+ ++ + W
Sbjct: 362 VKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVVFATVW 407
>TAIR|locus:2101801 [details] [associations]
symbol:HAM2 "AT3G60630" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IMP] [GO:0048768 "root hair cell tip growth" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0007020 "microtubule
nucleation" evidence=RCA] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0051301 GO:GO:0003700 GO:GO:0006351
GO:GO:0048768 GO:GO:0010492 EMBL:AL162295 InterPro:IPR005202
PROSITE:PS50985 EMBL:AY064062 EMBL:AY096372 EMBL:EU550731
EMBL:EU550732 EMBL:EU550733 EMBL:EU550734 EMBL:EU550735
EMBL:EU550736 EMBL:EU550737 EMBL:EU550738 EMBL:EU550739
EMBL:EU550740 EMBL:EU550741 EMBL:EU550742 EMBL:EU550743
EMBL:EU550744 EMBL:EU550745 EMBL:EU550746 EMBL:EU550747
EMBL:EU550748 EMBL:EU550749 EMBL:EU550750 EMBL:EU550752
EMBL:EU550754 EMBL:EU550751 EMBL:EU550753 IPI:IPI00520916
PIR:T47874 RefSeq:NP_191622.1 UniGene:At.27084 IntAct:Q9M000
EnsemblPlants:AT3G60630.1 GeneID:825234 KEGG:ath:AT3G60630
GeneFarm:4227 TAIR:At3g60630 eggNOG:NOG261649 HOGENOM:HOG000239326
InParanoid:Q9M000 OMA:ANQTILE PhylomeDB:Q9M000
ProtClustDB:CLSN2683334 Genevestigator:Q9M000 Uniprot:Q9M000
Length = 623
Score = 304 (112.1 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 99/315 (31%), Positives = 160/315 (50%)
Query: 157 SCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFK 216
+ Y + ++ +PF++F + TANQ ILES + G IHI+DFDI +G QW L+Q L +
Sbjct: 328 AAYRAFSETSPFLQFVNFTANQTILESFE-GFDRIHIVDFDIGYGGQWASLIQELAGKRN 386
Query: 217 NSNMLQPPPMLRITG-----TGNDIEILQRTGERLLKFAQSLGLRFQFHPL---LLMNDD 268
S+ P L+IT T +D L+ T E L FA G+ F+ L +L+N
Sbjct: 387 RSSSA---PSLKITAFASPSTVSDEFELRFTEENLRSFAGETGVSFEIELLNMEILLN-- 441
Query: 269 PTSVAFYLPSALTILPD-ETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAE 327
PT Y P +L + E +AVN L + ++ + L L L +K ++P VV ++
Sbjct: 442 PT----YWPLSLFRSSEKEAIAVN--LPISSMVSGY----LPLILRFLKQISPNVVVCSD 491
Query: 328 REASHNHPL-FLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEG 386
R N+ F + A+ +Y ++ +SL++ N+ ++E+ I +++
Sbjct: 492 RSCDRNNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAATSIERFCVQPSIQKLLT--- 548
Query: 387 ENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQL---QVLNNSL 443
NR ER W + CG++ V LS A +QA+ LL+ + P G+ L Q + SL
Sbjct: 549 -NRYRWMERSPPWRSLFGQCGFTPVTLSQTAETQAEYLLQRN-PMRGFHLEKRQSSSPSL 606
Query: 444 FLGWQNRALFSVSSW 458
L WQ + L +VS+W
Sbjct: 607 VLCWQRKELVTVSAW 621
>TAIR|locus:2055622 [details] [associations]
symbol:HAM1 "AT2G45160" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IMP] [GO:0048768 "root hair cell tip growth" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] Pfam:PF03514
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0051301
GO:GO:0003700 GO:GO:0006351 GO:GO:0048768 GO:GO:0010492
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000239326
ProtClustDB:CLSN2683334 EMBL:BT004053 EMBL:BT020591 IPI:IPI00534274
PIR:B84887 RefSeq:NP_182041.1 UniGene:At.27046 UniGene:At.67081
UniGene:At.74179 STRING:Q7XJM8 PaxDb:Q7XJM8 PRIDE:Q7XJM8
EnsemblPlants:AT2G45160.1 GeneID:819124 KEGG:ath:AT2G45160
GeneFarm:4226 TAIR:At2g45160 eggNOG:NOG320780 InParanoid:Q7XJM8
OMA:HRWIERS PhylomeDB:Q7XJM8 Genevestigator:Q7XJM8 Uniprot:Q7XJM8
Length = 640
Score = 301 (111.0 bits), Expect = 6.5e-26, P = 6.5e-26
Identities = 94/316 (29%), Positives = 158/316 (50%)
Query: 157 SCYLSLNQITPFIRFSHLTANQAILESL-QVGQQSIHILDFDIMHGVQWPPLMQALVE-- 213
+ Y S ++ +PF++F + TANQ+ILES + G IHI+DFD+ +G QW LMQ L
Sbjct: 348 AAYRSFSETSPFLQFVNFTANQSILESCNESGFDRIHIIDFDVGYGGQWSSLMQELASGV 407
Query: 214 --RFKNS------NMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPL--- 262
R +N + PPP T +D L+ T E L FA + + F+ L
Sbjct: 408 GGRRRNRASSLKLTVFAPPP-----STVSDEFELRFTEENLKTFAGEVKIPFEIELLSVE 462
Query: 263 LLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRV 322
LL+N P Y P +L E +AVN L ++ + + L L L +K L+P +
Sbjct: 463 LLLN--PA----YWPLSLRSSEKEAIAVN--LPVNSVASGY----LPLILRFLKQLSPNI 510
Query: 323 VTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIV 382
V ++R N F + ++ ++ ++ +SL+A +++ ++E+ W I +++
Sbjct: 511 VVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDAN---QNQDDSSIERFWVQPSIEKLL 567
Query: 383 ATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNS 442
R ER W ++ CG+S LS A +QA+ LL+ + P G+ ++ +S
Sbjct: 568 M----KRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRN-PVRGFHVEKRQSS 622
Query: 443 LFLGWQNRALFSVSSW 458
L + WQ + L +VS+W
Sbjct: 623 LVMCWQRKELVTVSAW 638
>UNIPROTKB|Q6DLS1 [details] [associations]
symbol:SCL1 "SCARECROW-like protein" species:3708 "Brassica
napus" [GO:0005515 "protein binding" evidence=IPI] Pfam:PF03514
GO:GO:0006355 GO:GO:0006351 InterPro:IPR005202 PROSITE:PS50985
EMBL:AY664405 IntAct:Q6DLS1 Uniprot:Q6DLS1
Length = 461
Score = 239 (89.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 84/302 (27%), Positives = 135/302 (44%)
Query: 165 ITPFIRFSHLTANQAILESLQVGQQS--IHILDFDIMHGVQWPPLMQALVERFKNSNMLQ 222
I+P FSH TANQAIL+SL S +H++DF+I G Q+ LM+ + E+ N L
Sbjct: 179 ISPIPLFSHFTANQAILDSLSSQSSSPFVHVVDFEIGFGGQYASLMREIAEKSANGGFL- 237
Query: 223 PPPMLRITGT-GNDIEILQR-TGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSAL 280
R+T D + R E L +FA + +RFQ +L+ + S A+
Sbjct: 238 -----RVTAVVAEDCAVETRLVKENLTQFAAEMKIRFQIEFVLMKTFEILSF-----KAI 287
Query: 281 TILPDE-TLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREA---SHNHPL 336
+ E T+ + +++ + F++ + ++P VV + E +
Sbjct: 288 RFVDGERTVVLISPAIFRRVI------GIAEFVNNLGRVSPNVVVFVDSEGCTETAGSGS 341
Query: 337 FLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERF 396
F + FV A + Y + +SL+A PP + VE +I V T NR+ +
Sbjct: 342 FRREFVSAFEFYTMVLESLDAAAPPGDLVKKIVETFLLRPKISAAVETAA-NRRSAGQM- 399
Query: 397 DSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVS 456
+W +L + G V LS +A QA+ LL G+ + L L W RAL + S
Sbjct: 400 -TWREMLCAAGMRPVQLSQFADFQAECLLE-KAQVRGFHVAKRQGELVLCWHGRALVATS 457
Query: 457 SW 458
+W
Sbjct: 458 AW 459
>TAIR|locus:2115340 [details] [associations]
symbol:HAM4 "AT4G36710" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0048831 "regulation of shoot system development" evidence=IGI]
Pfam:PF03514 GO:GO:0005634 GO:GO:0030154 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0048831
EMBL:AL161589 EMBL:Z99708 InterPro:IPR005202 PROSITE:PS50985
EMBL:AK118497 IPI:IPI00538111 PIR:E85433 RefSeq:NP_195389.4
UniGene:At.31304 PaxDb:O23210 PRIDE:O23210 DNASU:829824
EnsemblPlants:AT4G36710.1 GeneID:829824 KEGG:ath:AT4G36710
GeneFarm:4264 TAIR:At4g36710 eggNOG:NOG271584 HOGENOM:HOG000090733
InParanoid:O23210 OMA:ELVLCWH ProtClustDB:CLSN2717261
Genevestigator:O23210 Uniprot:O23210
Length = 486
Score = 231 (86.4 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 81/301 (26%), Positives = 132/301 (43%)
Query: 165 ITPFIRFSHLTANQAILESLQVGQQS--IHILDFDIMHGVQWPPLMQALVERFKNSNMLQ 222
I+P FSH TANQAIL+SL S +H++DF+I G Q+ LM+ + E+ + L
Sbjct: 204 ISPIPLFSHFTANQAILDSLSSQSSSPFVHVVDFEIGFGGQYASLMREITEKSVSGGFL- 262
Query: 223 PPPMLRITGT-GNDIEILQR-TGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSAL 280
R+T + + R E L +FA + +RFQ +L+ + S A+
Sbjct: 263 -----RVTAVVAEECAVETRLVKENLTQFAAEMKIRFQIEFVLMKTFEMLSF-----KAI 312
Query: 281 TILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREA---SHNHPLF 337
+ E V + + L + F++ ++ ++P+VV + E F
Sbjct: 313 RFVEGERTVVLISPAIFRRLSG-----ITDFVNNLRRVSPKVVVFVDSEGWTEIAGSGSF 367
Query: 338 LQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFD 397
+ FV A++ Y + +SL+A PP + VE +I V T + R H
Sbjct: 368 RREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADRR---HTGEM 424
Query: 398 SWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSS 457
+W + G + LS +A QA+ LL G+ + L L W RAL + S+
Sbjct: 425 TWREAFCAAGMRPIQLSQFADFQAECLLE-KAQVRGFHVAKRQGELVLCWHGRALVATSA 483
Query: 458 W 458
W
Sbjct: 484 W 484
>TAIR|locus:2126901 [details] [associations]
symbol:HAM3 "AT4G00150" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010492 "maintenance of shoot apical meristem identity"
evidence=IGI] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0048768 "root hair cell tip growth" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP] Pfam:PF03514 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0051301 GO:GO:0007623 GO:GO:0003700
GO:GO:0006351 GO:GO:0048768 GO:GO:0010492 EMBL:AL161471
EMBL:AF069299 InterPro:IPR005202 PROSITE:PS50985
HOGENOM:HOG000239326 eggNOG:NOG320780 EMBL:AF462831 EMBL:AY133537
EMBL:AF036303 EMBL:EU550755 EMBL:EU550756 EMBL:EU550757
EMBL:EU550758 EMBL:EU550759 EMBL:EU550760 EMBL:EU550761
EMBL:EU550762 EMBL:EU550763 EMBL:EU550764 EMBL:EU550765
EMBL:EU550766 EMBL:EU550767 EMBL:EU550768 EMBL:EU550769
EMBL:EU550770 EMBL:EU550771 EMBL:EU550772 EMBL:EU550773
EMBL:EU550774 EMBL:EU550775 EMBL:EU550776 EMBL:EU550777
IPI:IPI00542979 PIR:T01343 PIR:T51237 RefSeq:NP_191926.1
UniGene:At.3732 UniGene:At.67226 IntAct:O81316
EnsemblPlants:AT4G00150.1 GeneID:828208 KEGG:ath:AT4G00150
GeneFarm:4228 TAIR:At4g00150 InParanoid:O81316 OMA:KTPPWRA
PhylomeDB:O81316 ProtClustDB:CLSN2916162 Genevestigator:O81316
Uniprot:O81316
Length = 558
Score = 179 (68.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 60/201 (29%), Positives = 100/201 (49%)
Query: 157 SCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFK 216
+ Y S ++I+P ++F++ T+NQA+LES G +HI+DFDI +G QW LMQ LV R
Sbjct: 274 AAYKSFSEISPVLQFANFTSNQALLESFH-GFHRLHIIDFDIGYGGQWASLMQELVLR-D 331
Query: 217 NSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYL 276
N+ L + + +D L T + L FA + + L L D S+++
Sbjct: 332 NAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSL--DLLGSISW-- 387
Query: 277 PSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPL 336
P++ E +AVN + H L L L +K L+P ++ ++R
Sbjct: 388 PNSSE---KEAVAVN----ISAASFSH----LPLVLRFVKHLSPTIIVCSDRGCERTDLP 436
Query: 337 FLQRFVEAVDHYGAIFDSLEA 357
F Q+ ++ + A+F+SL+A
Sbjct: 437 FSQQLAHSLHSHTALFESLDA 457
Score = 150 (57.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 43/152 (28%), Positives = 75/152 (49%)
Query: 308 LRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERL 367
L L L +K L+P ++ ++R F Q+ ++ + A+F+SL+A + N
Sbjct: 408 LPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDA-VNANLDAMQ 466
Query: 368 AVEQVWFGREIVEIVATEGENRKERHER-FDSWEMILRSCGYSNVPLSGYALSQAKLLLR 426
+E+ EI ++V +R ER +W+ + G+S V S + SQA+ L++
Sbjct: 467 KIERFLIQPEIEKLVL----DRSRPIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQ 522
Query: 427 LHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
P G+ ++ +NSL L WQ L VS+W
Sbjct: 523 -RTPVRGFHVEKKHNSLLLCWQRTELVGVSAW 553
Score = 59 (25.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 61 SPPAIHMRQLLISCAELFSQADFSAAHRLISILSAN-SSPYGDSIERLVHQFIRALSLRL 119
+P + + + L+ AE+ ++D A +++ L+ SSP G +ER F AL+
Sbjct: 199 NPGPVGITEQLVKAAEVI-ESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALN--- 254
Query: 120 NLHH 123
NL H
Sbjct: 255 NLLH 258
>TAIR|locus:1009023400 [details] [associations]
symbol:AT5G67411 "AT5G67411" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03514 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 EMBL:AB007645
InterPro:IPR005202 PROSITE:PS50985 EMBL:DQ487622 IPI:IPI00657013
RefSeq:NP_001032167.1 UniGene:At.65711 EnsemblPlants:AT5G67411.1
GeneID:3771574 KEGG:ath:AT5G67411 TAIR:At5g67411 eggNOG:NOG309215
PhylomeDB:Q2V2T9 Genevestigator:Q2V2T9 Uniprot:Q2V2T9
Length = 202
Score = 160 (61.4 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 54/197 (27%), Positives = 90/197 (45%)
Query: 211 LVERFKNSNMLQPPPMLRITGTGNDIEI---------LQRTGERLLKFAQSLGLRFQFHP 261
L++ N +PPP+L++T +D E + G +L+ FA + + +F
Sbjct: 6 LIDSMANKLHKKPPPLLKLTVIASDAEFHPPPLLGISYEELGSKLVNFATTRNVAMEFRI 65
Query: 262 LLLMNDDPTSVAFYLPSALTILP---DETLAVNCMLFLHKLLKDHDTRDLR-LFLHKIKA 317
+ D S L L I P +E L VNC + LH + + T +LR +FL +++
Sbjct: 66 ISSSYSDGLSS---LIEQLRIDPFVFNEALVVNCHMMLHYIPDEILTSNLRSVFLKELRD 122
Query: 318 LNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGRE 377
LNP +VT+ + ++ F+ R ++ +D+ E L S +R E +
Sbjct: 123 LNPTIVTLIDEDSDFTSTNFISRLRSLYNYMWIPYDTAEMFLTRGSEQRQWYEAD-ISWK 181
Query: 378 IVEIVATEGENRKERHE 394
I +VA EG R ER E
Sbjct: 182 IDNVVAKEGAERVERLE 198
>TAIR|locus:2087994 [details] [associations]
symbol:AT3G13840 "AT3G13840" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003700 GO:GO:0006351 EMBL:AB028610
InterPro:IPR005202 PROSITE:PS50985 IPI:IPI00544801
RefSeq:NP_188000.1 UniGene:At.64114 PaxDb:Q9LRW3 PRIDE:Q9LRW3
EnsemblPlants:AT3G13840.1 GeneID:820596 KEGG:ath:AT3G13840
GeneFarm:4262 TAIR:At3g13840 eggNOG:NOG262645 HOGENOM:HOG000240132
InParanoid:Q9LRW3 OMA:WFAFPNN PhylomeDB:Q9LRW3
ProtClustDB:CLSN2684819 Genevestigator:Q9LRW3 Uniprot:Q9LRW3
Length = 510
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 81/316 (25%), Positives = 124/316 (39%)
Query: 69 QLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAXXXX 128
+LL CA + ++ S + +LS +S GD+ RL +RAL HH
Sbjct: 147 KLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQ-----HHLSSSS 201
Query: 129 XXXXXXXXXXXXXXXXXXXXXXDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVG- 187
+ Q L +++P+ + AN AIL+ L
Sbjct: 202 VSSSFWPVFTFASA--------EVKMFQKTLLKFYEVSPWFALPNNMANSAILQILAQDP 253
Query: 188 --QQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGN---DIEIL--- 239
++ +HI+D + HG+QWP L++AL R + PPP +RIT + DI
Sbjct: 254 KDKKDLHIIDIGVSHGMQWPTLLEALSCRLEG-----PPPRVRITVISDLTADIPFSVGP 308
Query: 240 --QRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLH 297
G +LL FA+SL + Q L + TS P E L V LH
Sbjct: 309 PGYNYGSQLLGFARSLKINLQISVLDKLQLIDTS------------PHENLIVCAQFRLH 356
Query: 298 KLLKDHDTRDLR-LFLHKIKALNPRVVTIAEREASHNHPL-FLQRFVEAVDHYGAIFDSL 355
L H D R L +++L P+ V + E + F F + +++ DS
Sbjct: 357 HL--KHSINDERGETLKAVRSLRPKGVVLCENNGECSSSADFAAGFSKKLEYVWKFLDST 414
Query: 356 EATLPP-NSRERLAVE 370
+ NS ER +E
Sbjct: 415 SSGFKEENSEERKLME 430
>UNIPROTKB|Q1AHE4 [details] [associations]
symbol:SCL "SCARECROW-like protein" species:4081 "Solanum
lycopersicum" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF03514 GO:GO:0006355 GO:GO:0006351 InterPro:IPR005202
PROSITE:PS50985 EMBL:DQ087265 UniGene:Les.23827 Uniprot:Q1AHE4
Length = 71
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 389 RKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQ 448
R ERHE W++ G+ PLS Y S K L+R + SE Y L + ++ LGW+
Sbjct: 3 RVERHELLGKWKLRFTMAGFHQYPLSSYVNSVIKSLMRCY--SEHYTLVEKDGAMLLGWK 60
Query: 449 NRALFSVSSWH 459
R L S S+WH
Sbjct: 61 KRNLISASAWH 71
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 459 406 0.00078 118 3 11 22 0.48 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 619 (66 KB)
Total size of DFA: 256 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.71u 0.09s 32.80t Elapsed: 00:00:01
Total cpu time: 32.72u 0.09s 32.81t Elapsed: 00:00:01
Start: Mon May 20 22:35:38 2013 End: Mon May 20 22:35:39 2013