Query 048299
Match_columns 459
No_of_seqs 149 out of 666
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:17:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 2E-112 4E-117 878.8 39.1 368 67-459 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.6 0.0017 3.8E-08 63.6 15.6 192 163-411 33-226 (247)
3 TIGR00740 methyltransferase, p 96.8 0.047 1E-06 53.0 15.7 107 190-328 54-162 (239)
4 TIGR02752 MenG_heptapren 2-hep 96.4 0.36 7.7E-06 46.3 18.1 57 178-247 35-91 (231)
5 PLN02233 ubiquinone biosynthes 96.0 0.84 1.8E-05 45.3 19.2 133 176-342 61-195 (261)
6 PRK06202 hypothetical protein; 95.6 0.16 3.5E-06 49.0 12.0 144 152-328 24-167 (232)
7 TIGR02716 C20_methyl_CrtF C-20 95.5 0.28 6.2E-06 49.4 13.6 117 177-331 138-258 (306)
8 PF01209 Ubie_methyltran: ubiE 94.5 0.42 9E-06 46.8 11.4 181 179-415 38-220 (233)
9 PF12847 Methyltransf_18: Meth 93.2 0.43 9.4E-06 39.9 7.6 105 192-327 4-110 (112)
10 PRK08317 hypothetical protein; 93.0 7 0.00015 36.7 16.6 53 180-245 11-63 (241)
11 PTZ00098 phosphoethanolamine N 92.5 6.5 0.00014 39.0 16.1 62 171-247 35-96 (263)
12 TIGR01934 MenG_MenH_UbiE ubiqu 92.2 10 0.00022 35.5 17.8 119 175-330 26-146 (223)
13 PF13489 Methyltransf_23: Meth 91.8 2.4 5.2E-05 37.4 11.0 96 190-332 23-120 (161)
14 PLN02336 phosphoethanolamine N 91.7 9.8 0.00021 40.7 17.4 114 176-327 254-368 (475)
15 smart00138 MeTrc Methyltransfe 91.7 0.47 1E-05 47.2 6.8 53 190-246 100-152 (264)
16 COG2226 UbiE Methylase involve 91.6 15 0.00033 36.3 18.1 191 164-412 26-221 (238)
17 PF13649 Methyltransf_25: Meth 91.2 0.44 9.4E-06 39.7 5.2 97 193-320 1-99 (101)
18 TIGR00477 tehB tellurite resis 90.2 3.7 8E-05 38.7 11.2 111 175-323 17-128 (195)
19 TIGR02021 BchM-ChlM magnesium 89.5 3 6.6E-05 39.7 10.1 60 172-247 37-98 (219)
20 PRK00216 ubiE ubiquinone/menaq 89.4 19 0.00042 33.9 15.7 55 180-247 43-97 (239)
21 PLN02585 magnesium protoporphy 88.5 7.9 0.00017 39.8 12.8 103 190-327 145-249 (315)
22 PF13847 Methyltransf_31: Meth 88.4 2.4 5.2E-05 37.9 8.1 107 190-329 4-112 (152)
23 TIGR03587 Pse_Me-ase pseudamin 88.4 7.9 0.00017 37.0 12.1 98 192-330 46-145 (204)
24 PRK11207 tellurite resistance 88.3 6.6 0.00014 37.1 11.4 111 176-324 18-130 (197)
25 TIGR03438 probable methyltrans 88.2 6.7 0.00014 39.7 12.0 112 190-327 64-176 (301)
26 PLN02396 hexaprenyldihydroxybe 88.0 14 0.0003 38.1 14.2 100 190-327 132-234 (322)
27 PF00891 Methyltransf_2: O-met 87.6 6 0.00013 38.2 10.9 110 178-331 90-203 (241)
28 PRK01683 trans-aconitate 2-met 87.5 5.4 0.00012 38.9 10.6 56 176-245 19-74 (258)
29 PRK14103 trans-aconitate 2-met 86.5 9.6 0.00021 37.2 11.8 106 179-328 20-126 (255)
30 PF09243 Rsm22: Mitochondrial 85.8 6.1 0.00013 39.6 10.1 139 172-345 13-156 (274)
31 PLN02336 phosphoethanolamine N 85.7 12 0.00025 40.2 12.8 113 178-326 27-140 (475)
32 PRK11873 arsM arsenite S-adeno 84.7 39 0.00085 33.2 15.2 102 190-327 78-183 (272)
33 PRK11036 putative S-adenosyl-L 84.7 9.6 0.00021 37.3 10.7 113 178-326 35-147 (255)
34 COG4106 Tam Trans-aconitate me 84.4 3.9 8.5E-05 40.1 7.5 106 190-335 31-136 (257)
35 TIGR03439 methyl_EasF probable 84.4 22 0.00047 36.7 13.5 152 179-354 69-234 (319)
36 PRK12335 tellurite resistance 84.0 14 0.00031 36.9 11.9 109 177-323 109-218 (287)
37 PRK09489 rsmC 16S ribosomal RN 82.5 22 0.00048 36.9 12.8 116 177-326 185-301 (342)
38 PRK05785 hypothetical protein; 82.2 40 0.00087 32.6 13.8 41 190-244 52-92 (226)
39 TIGR02072 BioC biotin biosynth 80.5 51 0.0011 30.9 17.7 59 176-247 19-79 (240)
40 PF03291 Pox_MCEL: mRNA cappin 79.7 11 0.00024 39.0 9.4 120 190-330 63-189 (331)
41 PLN02232 ubiquinone biosynthes 78.9 45 0.00098 30.3 12.3 82 230-330 1-84 (160)
42 COG2227 UbiG 2-polyprenyl-3-me 76.9 9.5 0.00021 37.8 7.5 98 190-325 60-158 (243)
43 PLN02244 tocopherol O-methyltr 75.4 51 0.0011 34.0 12.9 101 190-327 119-223 (340)
44 PRK07580 Mg-protoporphyrin IX 74.8 41 0.00089 31.8 11.3 56 176-247 48-106 (230)
45 COG1341 Predicted GTPase or GT 74.4 40 0.00087 35.8 11.7 81 287-380 174-254 (398)
46 TIGR00452 methyltransferase, p 73.8 40 0.00086 34.7 11.4 48 179-241 112-159 (314)
47 smart00828 PKS_MT Methyltransf 72.1 52 0.0011 31.0 11.3 101 192-327 2-104 (224)
48 PRK15001 SAM-dependent 23S rib 71.8 38 0.00082 35.8 11.0 122 178-328 218-340 (378)
49 PRK10258 biotin biosynthesis p 71.1 1E+02 0.0022 29.7 13.7 57 173-245 27-83 (251)
50 PRK11705 cyclopropane fatty ac 70.6 47 0.001 34.9 11.5 108 178-326 157-265 (383)
51 PF13679 Methyltransf_32: Meth 70.0 12 0.00026 33.3 6.0 48 189-245 25-72 (141)
52 PF08241 Methyltransf_11: Meth 69.9 7.6 0.00016 30.6 4.3 93 194-325 1-94 (95)
53 PF02353 CMAS: Mycolic acid cy 69.4 26 0.00057 35.1 8.9 112 179-327 53-165 (273)
54 PRK06922 hypothetical protein; 68.8 45 0.00098 37.8 11.2 110 191-328 420-538 (677)
55 TIGR02081 metW methionine bios 67.9 77 0.0017 29.5 11.2 47 179-242 6-52 (194)
56 COG2230 Cfa Cyclopropane fatty 67.7 76 0.0016 32.3 11.7 108 178-322 62-170 (283)
57 PRK15068 tRNA mo(5)U34 methylt 60.3 2.1E+02 0.0045 29.4 13.8 138 154-327 75-225 (322)
58 PRK05134 bifunctional 3-demeth 57.7 1.7E+02 0.0038 27.7 15.9 52 190-260 49-100 (233)
59 PF03848 TehB: Tellurite resis 56.0 77 0.0017 30.3 8.9 110 178-325 20-130 (192)
60 PF08242 Methyltransf_12: Meth 55.6 4 8.6E-05 33.5 0.1 43 194-249 1-43 (99)
61 PRK10909 rsmD 16S rRNA m(2)G96 54.3 1.6E+02 0.0035 28.0 10.9 107 190-333 54-164 (199)
62 KOG1270 Methyltransferases [Co 53.5 58 0.0012 32.9 7.8 95 193-321 93-188 (282)
63 PLN02490 MPBQ/MSBQ methyltrans 52.7 1.2E+02 0.0027 31.4 10.5 43 190-245 114-156 (340)
64 TIGR02469 CbiT precorrin-6Y C5 52.5 52 0.0011 27.3 6.6 45 192-249 22-66 (124)
65 PRK11088 rrmA 23S rRNA methylt 49.5 81 0.0018 31.1 8.3 81 151-244 50-130 (272)
66 TIGR01983 UbiG ubiquinone bios 49.3 2.3E+02 0.0049 26.5 14.8 100 190-326 46-147 (224)
67 KOG4300 Predicted methyltransf 48.3 1.7E+02 0.0037 28.9 9.8 123 185-343 72-196 (252)
68 PRK00274 ksgA 16S ribosomal RN 47.8 61 0.0013 32.2 7.1 70 161-246 10-84 (272)
69 COG2242 CobL Precorrin-6B meth 47.4 47 0.001 31.7 5.9 45 190-250 35-82 (187)
70 PRK13255 thiopurine S-methyltr 47.3 2.4E+02 0.0051 27.2 10.9 37 190-241 38-74 (218)
71 KOG3178 Hydroxyindole-O-methyl 46.9 48 0.001 34.6 6.3 158 179-412 167-327 (342)
72 TIGR00417 speE spermidine synt 46.8 2.8E+02 0.0062 27.4 11.7 107 192-327 75-185 (270)
73 TIGR00537 hemK_rel_arch HemK-r 45.5 2.4E+02 0.0052 25.7 13.1 50 192-260 22-71 (179)
74 PF07521 RMMBL: RNA-metabolisi 43.3 35 0.00075 24.4 3.4 39 286-327 1-39 (43)
75 PRK04148 hypothetical protein; 42.6 92 0.002 28.1 6.7 70 180-264 8-112 (134)
76 PRK13944 protein-L-isoaspartat 41.7 64 0.0014 30.5 6.0 57 179-248 63-119 (205)
77 COG1093 SUI2 Translation initi 41.4 63 0.0014 32.5 5.9 38 223-260 219-260 (269)
78 PRK13168 rumA 23S rRNA m(5)U19 41.2 2.8E+02 0.006 29.6 11.4 103 190-329 298-401 (443)
79 PRK00811 spermidine synthase; 40.3 3.3E+02 0.0072 27.2 11.2 109 192-329 79-192 (283)
80 PF05175 MTS: Methyltransferas 39.9 79 0.0017 28.9 6.1 116 176-324 19-136 (170)
81 smart00650 rADc Ribosomal RNA 39.1 73 0.0016 29.0 5.7 54 178-247 3-56 (169)
82 PRK07402 precorrin-6B methylas 38.6 1.4E+02 0.0029 27.8 7.6 65 171-249 23-87 (196)
83 PTZ00338 dimethyladenosine tra 37.7 61 0.0013 32.9 5.4 60 173-248 17-80 (294)
84 PRK08287 cobalt-precorrin-6Y C 37.1 1.1E+02 0.0024 28.1 6.7 46 190-248 32-77 (187)
85 PRK00107 gidB 16S rRNA methylt 36.7 1.2E+02 0.0025 28.7 6.8 96 191-327 47-144 (187)
86 TIGR00536 hemK_fam HemK family 35.0 1.5E+02 0.0032 29.6 7.6 53 191-260 116-170 (284)
87 PHA03411 putative methyltransf 34.8 88 0.0019 31.8 5.9 75 156-245 31-107 (279)
88 TIGR00138 gidB 16S rRNA methyl 34.7 73 0.0016 29.7 5.1 53 191-260 44-97 (181)
89 PRK14968 putative methyltransf 33.7 1.1E+02 0.0024 27.6 6.1 43 190-247 24-66 (188)
90 KOG2904 Predicted methyltransf 33.2 93 0.002 31.8 5.7 56 179-247 136-193 (328)
91 PLN02366 spermidine synthase 32.5 4E+02 0.0087 27.2 10.4 45 192-249 94-138 (308)
92 PRK00517 prmA ribosomal protei 32.4 1.2E+02 0.0025 29.7 6.3 62 172-247 101-163 (250)
93 PF02056 Glyco_hydro_4: Family 32.3 1.8E+02 0.0039 27.6 7.2 53 202-260 10-62 (183)
94 cd05296 GH4_P_beta_glucosidase 32.0 2.3E+02 0.0051 30.3 8.9 50 205-260 14-64 (419)
95 PRK11727 23S rRNA mA1618 methy 31.6 1.4E+02 0.0031 30.8 7.0 46 190-248 115-160 (321)
96 TIGR00080 pimt protein-L-isoas 31.3 1.2E+02 0.0026 28.7 6.1 57 179-248 68-124 (215)
97 PRK02399 hypothetical protein; 30.4 4.3E+02 0.0094 28.3 10.3 92 229-346 308-399 (406)
98 COG4301 Uncharacterized conser 30.2 2.7E+02 0.0059 28.2 8.2 154 175-353 60-229 (321)
99 PF15609 PRTase_2: Phosphoribo 30.0 1.4E+02 0.0031 28.6 6.1 71 184-264 118-188 (191)
100 COG3457 Predicted amino acid r 29.9 3.7E+02 0.008 28.0 9.4 115 171-291 99-229 (353)
101 TIGR03534 RF_mod_PrmC protein- 29.5 1.3E+02 0.0029 28.6 6.1 53 190-259 88-141 (251)
102 PRK13942 protein-L-isoaspartat 29.2 1.2E+02 0.0027 28.8 5.8 56 180-248 68-123 (212)
103 PF06792 UPF0261: Uncharacteri 29.2 4.7E+02 0.01 28.0 10.4 94 228-347 306-400 (403)
104 PRK00050 16S rRNA m(4)C1402 me 29.1 82 0.0018 32.2 4.7 58 178-248 9-66 (296)
105 TIGR01626 ytfJ_HI0045 conserve 29.1 1.9E+02 0.004 27.5 6.8 111 190-318 60-182 (184)
106 PRK00377 cbiT cobalt-precorrin 28.8 1.4E+02 0.003 27.9 5.9 47 190-248 41-87 (198)
107 TIGR00755 ksgA dimethyladenosi 27.9 1.3E+02 0.0028 29.4 5.8 53 178-246 19-71 (253)
108 PRK00121 trmB tRNA (guanine-N( 27.9 83 0.0018 29.7 4.3 46 190-248 41-86 (202)
109 COG2813 RsmC 16S RNA G1207 met 27.7 98 0.0021 31.8 4.9 58 176-247 146-203 (300)
110 TIGR01716 RGG_Cterm transcript 26.9 1.2E+02 0.0026 28.5 5.2 55 67-121 127-182 (220)
111 PLN02866 phospholipase D 26.3 96 0.0021 37.0 5.1 47 178-230 347-402 (1068)
112 TIGR00406 prmA ribosomal prote 26.2 2.4E+02 0.0052 28.2 7.4 78 165-260 132-212 (288)
113 TIGR03840 TMPT_Se_Te thiopurin 26.0 5.9E+02 0.013 24.4 12.0 37 190-241 35-71 (213)
114 cd00635 PLPDE_III_YBL036c_like 25.8 2.9E+02 0.0064 26.3 7.7 64 190-260 118-195 (222)
115 PRK03987 translation initiatio 25.2 1.6E+02 0.0035 29.5 5.9 39 223-261 217-259 (262)
116 PRK09328 N5-glutamine S-adenos 25.0 2.3E+02 0.005 27.5 7.0 45 190-247 109-153 (275)
117 PLN02446 (5-phosphoribosyl)-5- 24.7 77 0.0017 31.9 3.5 27 185-213 55-81 (262)
118 PRK03646 dadX alanine racemase 24.2 1.5E+02 0.0032 30.9 5.6 53 190-252 118-178 (355)
119 COG2890 HemK Methylase of poly 23.9 1.2E+02 0.0025 30.6 4.7 44 192-248 113-156 (280)
120 COG1500 Predicted exosome subu 23.7 2.7E+02 0.0058 27.5 6.8 76 349-427 74-152 (234)
121 TIGR02085 meth_trns_rumB 23S r 23.2 6.5E+02 0.014 26.2 10.3 99 192-329 236-335 (374)
122 cd05298 GH4_GlvA_pagL_like Gly 22.6 2.2E+02 0.0047 30.7 6.7 50 205-260 14-63 (437)
123 KOG1271 Methyltransferases [Ge 22.3 4.2E+02 0.0091 25.7 7.7 120 192-344 70-196 (227)
124 cd05197 GH4_glycoside_hydrolas 22.2 2.1E+02 0.0046 30.6 6.5 50 205-260 14-63 (425)
125 TIGR03533 L3_gln_methyl protei 22.1 1.9E+02 0.0042 28.9 5.8 45 190-247 122-166 (284)
126 COG0357 GidB Predicted S-adeno 21.3 2.2E+02 0.0048 27.7 5.8 53 191-260 69-122 (215)
127 COG0075 Serine-pyruvate aminot 21.1 3.5E+02 0.0077 28.7 7.7 155 241-412 90-290 (383)
128 PRK14121 tRNA (guanine-N(7)-)- 21.0 2E+02 0.0044 30.6 5.9 54 180-247 114-167 (390)
129 PF13768 VWA_3: von Willebrand 20.8 1.2E+02 0.0025 26.8 3.6 38 178-216 113-150 (155)
130 PLN03075 nicotianamine synthas 20.7 7.6E+02 0.016 25.3 9.8 107 192-328 126-233 (296)
131 KOG1165 Casein kinase (serine/ 20.4 55 0.0012 34.4 1.5 11 189-199 166-176 (449)
132 cd00138 PLDc Phospholipase D. 20.3 1.9E+02 0.0041 25.9 5.0 52 175-234 21-74 (176)
133 TIGR03704 PrmC_rel_meth putati 20.2 2.8E+02 0.0061 27.2 6.5 46 190-248 87-132 (251)
134 PRK14896 ksgA 16S ribosomal RN 20.1 2.2E+02 0.0048 27.9 5.8 58 174-247 11-72 (258)
135 PF11455 DUF3018: Protein of 20.1 65 0.0014 25.6 1.5 20 394-413 3-22 (65)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.7e-112 Score=878.79 Aligned_cols=368 Identities=46% Similarity=0.796 Sum_probs=343.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHhhhccCCchhhhhhhhcccccccCCCCCC
Q 048299 67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNITTTTTATTLPYNT 146 (459)
Q Consensus 67 L~~lLl~cAeAV~~gd~~~A~~lL~~L~~~aSp~Gd~~qRlA~yFaeAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (459)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+.+++.|. .+. +..
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~-~~~-----------~~~ 68 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYS-ALP-----------PSS 68 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCccccc-CCC-----------Ccc
Confidence 68999999999999999999999999999999999999999999999999999998888761 110 000
Q ss_pred CcCCChHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCe
Q 048299 147 TTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPM 226 (459)
Q Consensus 147 ~~~~~~~~~~~a~~~f~~~~P~~kfa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~ 226 (459)
.......+...+|+.||++|||+||||||||||||||++|++ +||||||||++|+|||+|||+||.|++ |||+
T Consensus 69 ~~~~~~~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~-~vHIID~~i~~G~QW~~LiqaLa~R~~------gpp~ 141 (374)
T PF03514_consen 69 PSPSESSEQLAAYQLFYELSPFLKFAHFTANQAILEAFEGER-RVHIIDFGIGFGVQWPSLIQALASRPG------GPPS 141 (374)
T ss_pred ccccchHHHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCc-ceEEEeccCCcchHHHHHHHHHhcCCC------CCCe
Confidence 000125678899999999999999999999999999999998 999999999999999999999999999 9999
Q ss_pred EEEeEecC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccC
Q 048299 227 LRITGTGN----DIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKD 302 (459)
Q Consensus 227 LRIT~i~~----~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~ 302 (459)
||||||++ +.+.+++||++|.+||+++||||||++|+.+++|+++ +++|++++||+|||||+++||||+++
T Consensus 142 LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~-----~~~l~~~~~E~laVn~~~~Lh~l~~~ 216 (374)
T PF03514_consen 142 LRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLD-----PSMLRLRPGEALAVNCMFQLHHLLDE 216 (374)
T ss_pred EEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCC-----HHHhCccCCcEEEEEeehhhhhhccc
Confidence 99999998 6889999999999999999999999998888999988 46899999999999999999999854
Q ss_pred CC--ChhHHHHHHHHHhcCCCeEEEEecCCCCCCcchHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhHhHHH
Q 048299 303 HD--TRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVE 380 (459)
Q Consensus 303 ~~--~~~~~~~L~~ir~L~P~iv~~~E~ea~~n~~~F~~RF~eaL~~YsalFDsLea~l~~~~~eR~~iE~~~lg~eI~n 380 (459)
.. .++++.||+.||+|+|+|||++|+|+|||+|+|++||.|||+||+|+|||||+++|+++++|..+|+.+||+||+|
T Consensus 217 ~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~n 296 (374)
T PF03514_consen 217 SGALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMN 296 (374)
T ss_pred cccccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHH
Confidence 21 2479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccccccchhHHHHHHHhCCCccccCChHHHHHHHHHHhhcCCCCCcEEEEeCCEEEEEECCceeEEEeecC
Q 048299 381 IVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH 459 (459)
Q Consensus 381 iVA~eG~~R~eR~E~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~~gy~v~~~~~~L~LgWk~~pL~~~SaWr 459 (459)
||||||.+|+||||++++|+.||.+|||+++|+|++++.||+.||+. |+++||+|++++|||+|||||+||+++||||
T Consensus 297 iVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~-~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 297 IVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRK-FPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhc-cCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999999999999999999999999999 5478999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.65 E-value=0.0017 Score=63.62 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=107.0
Q ss_pred hccCCCcchhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHH
Q 048299 163 NQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRT 242 (459)
Q Consensus 163 ~~~~P~~kfa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~et 242 (459)
....|.+...|-.++..+ ...-. . .-+|+|+|.|.|.- ...|+.+- ..|..++|||+.+.+.++.+
T Consensus 33 ~~~~p~y~~~~~~~~~~~-~~~~~-~-~~~vLDlGcGtG~~----~~~l~~~~-------~~~~~~v~gvD~S~~ml~~A 98 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLA-ERFVQ-P-GTQVYDLGCSLGAA----TLSVRRNI-------HHDNCKIIAIDNSPAMIERC 98 (247)
T ss_pred HhcCCChHHHHHHHHHHH-HHhCC-C-CCEEEEEcccCCHH----HHHHHHhc-------CCCCCeEEEEeCCHHHHHHH
Confidence 356888888887766543 33322 2 34799999999863 33344332 23568999999999999888
Q ss_pred HHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCC
Q 048299 243 GERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPR 321 (459)
Q Consensus 243 g~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~ 321 (459)
.+++.++.. .-.++|. .. +...+. ..+.++++ +.+.||++.+ ..+..+|+.| +.|+|.
T Consensus 99 ~~~~~~~~~--~~~v~~~--~~-d~~~~~----------~~~~D~vv--~~~~l~~l~~----~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 99 RRHIDAYKA--PTPVDVI--EG-DIRDIA----------IENASMVV--LNFTLQFLEP----SERQALLDKIYQGLNPG 157 (247)
T ss_pred HHHHHhcCC--CCCeEEE--eC-ChhhCC----------CCCCCEEe--hhhHHHhCCH----HHHHHHHHHHHHhcCCC
Confidence 887755321 1134443 22 222221 11224443 4456888842 2466777776 578998
Q ss_pred -eEEEEecCCCCCCcchHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhHhHHHHHhhcCCCccccccchhHHH
Q 048299 322 -VVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWE 400 (459)
Q Consensus 322 -iv~~~E~ea~~n~~~F~~RF~eaL~~YsalFDsLea~l~~~~~eR~~iE~~~lg~eI~niVA~eG~~R~eR~E~~~~W~ 400 (459)
+++++|.-... .+.....+.+..+.|. ..... + ...+++. ....+| +-++++.++..
T Consensus 158 G~l~l~e~~~~~-~~~~~~~~~~~~~~~~-----~~~g~--s---~~ei~~~--~~~~~~---------~~~~~~~~~~~ 215 (247)
T PRK15451 158 GALVLSEKFSFE-DAKVGELLFNMHHDFK-----RANGY--S---ELEISQK--RSMLEN---------VMLTDSVETHK 215 (247)
T ss_pred CEEEEEEecCCC-cchhHHHHHHHHHHHH-----HHcCC--C---HHHHHHH--HHHHHh---------hcccCCHHHHH
Confidence 56777754332 2233333333332221 11111 1 1122211 111222 34467888999
Q ss_pred HHHHhCCCccc
Q 048299 401 MILRSCGYSNV 411 (459)
Q Consensus 401 ~r~~~aGF~~~ 411 (459)
.+|+.|||..+
T Consensus 216 ~~L~~aGF~~v 226 (247)
T PRK15451 216 ARLHKAGFEHS 226 (247)
T ss_pred HHHHHcCchhH
Confidence 99999999864
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.85 E-value=0.047 Score=53.01 Aligned_cols=107 Identities=18% Similarity=0.262 Sum_probs=65.0
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDP 269 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~ 269 (459)
.-+|+|+|.|.|. ++..|+.+- ..|..++|||+.+.+.++.+.+++.++.. +...+|. .. +...
T Consensus 54 ~~~iLDlGcG~G~----~~~~l~~~~-------~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~--~~-d~~~ 117 (239)
T TIGR00740 54 DSNVYDLGCSRGA----ATLSARRNI-------NQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL--CN-DIRH 117 (239)
T ss_pred CCEEEEecCCCCH----HHHHHHHhc-------CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE--EC-Chhh
Confidence 4579999999984 555565543 23578999999999888888877765422 2234443 21 2222
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeE-EEEec
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVV-TIAER 328 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv-~~~E~ 328 (459)
+. ..+..++ -|.+.||++.++ ....+|+.+ +.|+|.-. ++.|.
T Consensus 118 ~~----------~~~~d~v--~~~~~l~~~~~~----~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 118 VE----------IKNASMV--ILNFTLQFLPPE----DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CC----------CCCCCEE--eeecchhhCCHH----HHHHHHHHHHHhcCCCeEEEEeec
Confidence 21 1122343 345557887322 355677766 57899954 45554
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.36 E-value=0.36 Score=46.26 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+.++..+.-.+ .-+|+|+|.|.|. +...|+.+- +|..++|||+.+...++.+.+++.
T Consensus 35 ~~~l~~l~~~~-~~~vLDiGcG~G~----~~~~la~~~--------~~~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 35 KDTMKRMNVQA-GTSALDVCCGTAD----WSIALAEAV--------GPEGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HHHHHhcCCCC-CCEEEEeCCCcCH----HHHHHHHHh--------CCCCEEEEEECCHHHHHHHHHHHH
Confidence 55666665443 4589999999987 333444432 245689999998888877776654
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.03 E-value=0.84 Score=45.26 Aligned_cols=133 Identities=16% Similarity=0.031 Sum_probs=74.3
Q ss_pred HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC
Q 048299 176 ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL 255 (459)
Q Consensus 176 aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv 255 (459)
....+++.+.-.+ .-+|+|+|.|.|. +...|+.+-+ |.-+||||+.+.+.++.+.++....++...-
T Consensus 61 ~r~~~~~~~~~~~-~~~VLDlGcGtG~----~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~ 127 (261)
T PLN02233 61 WKRMAVSWSGAKM-GDRVLDLCCGSGD----LAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYK 127 (261)
T ss_pred HHHHHHHHhCCCC-CCEEEEECCcCCH----HHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCC
Confidence 3444444443333 5689999999997 3345555432 3459999999999998887765433332222
Q ss_pred eEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHH-HHhcCCC-eEEEEecCCCCC
Q 048299 256 RFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHK-IKALNPR-VVTIAEREASHN 333 (459)
Q Consensus 256 pFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~-ir~L~P~-iv~~~E~ea~~n 333 (459)
..+|. .. +.+.++ ..++..=+|-+.+.||++ .+ ...+|+. .|-|+|. .++++|-...
T Consensus 128 ~i~~~--~~-d~~~lp----------~~~~sfD~V~~~~~l~~~-~d-----~~~~l~ei~rvLkpGG~l~i~d~~~~-- 186 (261)
T PLN02233 128 NIEWI--EG-DATDLP----------FDDCYFDAITMGYGLRNV-VD-----RLKAMQEMYRVLKPGSRVSILDFNKS-- 186 (261)
T ss_pred CeEEE--Ec-ccccCC----------CCCCCEeEEEEecccccC-CC-----HHHHHHHHHHHcCcCcEEEEEECCCC--
Confidence 34444 21 222222 222323244455668887 33 3445555 4789998 4556665432
Q ss_pred CcchHHHHH
Q 048299 334 HPLFLQRFV 342 (459)
Q Consensus 334 ~~~F~~RF~ 342 (459)
...|...+.
T Consensus 187 ~~~~~~~~~ 195 (261)
T PLN02233 187 TQPFTTSMQ 195 (261)
T ss_pred CcHHHHHHH
Confidence 234555443
No 6
>PRK06202 hypothetical protein; Provisional
Probab=95.65 E-value=0.16 Score=49.02 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeE
Q 048299 152 RNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITG 231 (459)
Q Consensus 152 ~~~~~~a~~~f~~~~P~~kfa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~ 231 (459)
..++.+.|..+-.+.++..--+-+-.+.+...+...+ ...|+|+|.|.|. +...|...... ..|..+|||
T Consensus 24 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~-~~~iLDlGcG~G~-~~~~L~~~~~~--------~g~~~~v~g 93 (232)
T PRK06202 24 PARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADR-PLTLLDIGCGGGD-LAIDLARWARR--------DGLRLEVTA 93 (232)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCC-CcEEEEeccCCCH-HHHHHHHHHHh--------CCCCcEEEE
Confidence 4445555555444433332112222333333333333 6789999999996 33333222222 234679999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHH
Q 048299 232 TGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLF 311 (459)
Q Consensus 232 i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~ 311 (459)
|+.+.+.++.+.++.. ..++.+... ..+ .+. ..++..=+|-|.+.|||+.+ ..+..+
T Consensus 94 vD~s~~~l~~a~~~~~----~~~~~~~~~--~~~---~l~----------~~~~~fD~V~~~~~lhh~~d----~~~~~~ 150 (232)
T PRK06202 94 IDPDPRAVAFARANPR----RPGVTFRQA--VSD---ELV----------AEGERFDVVTSNHFLHHLDD----AEVVRL 150 (232)
T ss_pred EcCCHHHHHHHHhccc----cCCCeEEEE--ecc---ccc----------ccCCCccEEEECCeeecCCh----HHHHHH
Confidence 9999888877655432 235554432 211 111 11222223334445899842 246678
Q ss_pred HHHHHhcCCCeEEEEec
Q 048299 312 LHKIKALNPRVVTIAER 328 (459)
Q Consensus 312 L~~ir~L~P~iv~~~E~ 328 (459)
|+.+.++.-..+++.+-
T Consensus 151 l~~~~r~~~~~~~i~dl 167 (232)
T PRK06202 151 LADSAALARRLVLHNDL 167 (232)
T ss_pred HHHHHHhcCeeEEEecc
Confidence 88887655455555543
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.47 E-value=0.28 Score=49.44 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=67.3
Q ss_pred HHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe
Q 048299 177 NQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR 256 (459)
Q Consensus 177 NqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp 256 (459)
.+.|++.+.-.+ .-+|+|+|.|.|. +...++++. |.+++|+++. +..++.+.++ ++..|+.
T Consensus 138 ~~~l~~~~~~~~-~~~vlDiG~G~G~----~~~~~~~~~---------p~~~~~~~D~-~~~~~~a~~~----~~~~gl~ 198 (306)
T TIGR02716 138 IQLLLEEAKLDG-VKKMIDVGGGIGD----ISAAMLKHF---------PELDSTILNL-PGAIDLVNEN----AAEKGVA 198 (306)
T ss_pred HHHHHHHcCCCC-CCEEEEeCCchhH----HHHHHHHHC---------CCCEEEEEec-HHHHHHHHHH----HHhCCcc
Confidence 567777776554 6799999999983 445555432 4689999986 3555555443 4445553
Q ss_pred --EEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCC-eEEEEecCCC
Q 048299 257 --FQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPR-VVTIAEREAS 331 (459)
Q Consensus 257 --FeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~-iv~~~E~ea~ 331 (459)
++|. ..+-.+ .+ +.+.+++.+.- .||+..+ .....+|+.+ +.|+|. .+++.|.-.+
T Consensus 199 ~rv~~~--~~d~~~-~~----------~~~~D~v~~~~--~lh~~~~----~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 199 DRMRGI--AVDIYK-ES----------YPEADAVLFCR--ILYSANE----QLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred ceEEEE--ecCccC-CC----------CCCCCEEEeEh--hhhcCCh----HHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 4443 222111 11 11234443332 3676622 2445677766 689996 5667776443
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.55 E-value=0.42 Score=46.84 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=69.6
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEE
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQ 258 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFe 258 (459)
.+++.+...+ -.+|+|++.|.|.-+ ..|+.+.+ |.-+|||++.+.+.|+.+.+++.+.... ..+
T Consensus 38 ~~~~~~~~~~-g~~vLDv~~GtG~~~----~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~ 101 (233)
T PF01209_consen 38 KLIKLLGLRP-GDRVLDVACGTGDVT----RELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQ---NIE 101 (233)
T ss_dssp HHHHHHT--S---EEEEET-TTSHHH----HHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT-----SEE
T ss_pred HHHhccCCCC-CCEEEEeCCChHHHH----HHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCC---Cee
Confidence 4555555555 779999999999543 34454443 4569999999999999999888865543 334
Q ss_pred EEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCe-EEEEecCCCCCCcch
Q 048299 259 FHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRV-VTIAEREASHNHPLF 337 (459)
Q Consensus 259 F~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~i-v~~~E~ea~~n~~~F 337 (459)
|. .. +.++ +...++..=+|-|.|.||++. + ....+=...|-|+|.- ++++|-.--.| .+
T Consensus 102 ~v--~~-da~~----------lp~~d~sfD~v~~~fglrn~~-d----~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~ 161 (233)
T PF01209_consen 102 FV--QG-DAED----------LPFPDNSFDAVTCSFGLRNFP-D----RERALREMYRVLKPGGRLVILEFSKPRN--PL 161 (233)
T ss_dssp EE--E--BTTB------------S-TT-EEEEEEES-GGG-S-S----HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HH
T ss_pred EE--Ec-CHHH----------hcCCCCceeEEEHHhhHHhhC-C----HHHHHHHHHHHcCCCeEEEEeeccCCCC--ch
Confidence 43 21 2222 234445666788999999983 3 3334444457799984 56666543222 22
Q ss_pred HHHHHHHHHHHHHHH-HhhhhcCCCCcHHHHHHHHHHHhHhHHHHHhhcCCCccccccchhHHHHHHHhCCCccccCCh
Q 048299 338 LQRFVEAVDHYGAIF-DSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSG 415 (459)
Q Consensus 338 ~~RF~eaL~~YsalF-DsLea~l~~~~~eR~~iE~~~lg~eI~niVA~eG~~R~eR~E~~~~W~~r~~~aGF~~~~ls~ 415 (459)
+. .....|...+ =-+..-+..+ +.. -.+|.+-|.+.. +.++-.+.|+.+||+.+...+
T Consensus 162 ~~---~~~~~y~~~ilP~~g~l~~~~---~~~--Y~yL~~Si~~f~------------~~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 162 LR---ALYKFYFKYILPLIGRLLSGD---REA--YRYLPESIRRFP------------SPEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp HH---HHHHH---------------------------------------------------------------------
T ss_pred hh---ceeeeeecccccccccccccc---ccc--cccccccccccc------------ccccccccccccccccccccc
Confidence 22 3333444322 1122222221 111 234555555433 234556788999998776543
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.18 E-value=0.43 Score=39.89 Aligned_cols=105 Identities=26% Similarity=0.276 Sum_probs=62.8
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCc
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTS 271 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~ 271 (459)
+|+|+|.|.|. +...|+.+. |..+||||+.+++.++.+.++..+.... -..+|.. . ++ ...
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~--~-d~-~~~ 64 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLS--DRITFVQ--G-DA-EFD 64 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEE--S-CC-HGG
T ss_pred EEEEEcCcCCH----HHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEE--C-cc-ccC
Confidence 58999999984 444455432 2567999999999999988888553333 3444442 1 22 001
Q ss_pred cccccccccccCC-CCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEEEe
Q 048299 272 VAFYLPSALTILP-DETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTIAE 327 (459)
Q Consensus 272 ~~~~l~~~l~~~~-~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~~E 327 (459)
..... =++++.+. +.+|+++.. ..+..+|+.++ .|+|.-+++++
T Consensus 65 --------~~~~~~~D~v~~~~-~~~~~~~~~---~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 --------PDFLEPFDLVICSG-FTLHFLLPL---DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp --------TTTSSCEEEEEECS-GSGGGCCHH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------cccCCCCCEEEECC-Cccccccch---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 01111 13455555 456666432 35677888775 78999766654
No 10
>PRK08317 hypothetical protein; Provisional
Probab=93.04 E-value=7 Score=36.73 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHH
Q 048299 180 ILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGER 245 (459)
Q Consensus 180 ILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~r 245 (459)
+++.+.-.+ .-+|+|+|.|.|. +...++.+-+ |.-++|+|+.+...++.+.++
T Consensus 11 ~~~~~~~~~-~~~vLdiG~G~G~----~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQP-GDRVLDVGCGPGN----DARELARRVG--------PEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCC-CCEEEEeCCCCCH----HHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHH
Confidence 455555554 6689999998874 3334444332 455899999988777766555
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=92.50 E-value=6.5 Score=38.99 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=41.7
Q ss_pred hhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 171 FSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 171 fa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
-+-+-+.+.|++.+.-.+ .-+|+|+|.|.|.-- ..|+.+.+ .++|||+.+...++.+.++..
T Consensus 35 ~gg~~~~~~~l~~l~l~~-~~~VLDiGcG~G~~a----~~la~~~~----------~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 35 SGGIEATTKILSDIELNE-NSKVLDIGSGLGGGC----KYINEKYG----------AHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCchHHHHHHHHhCCCCC-CCEEEEEcCCCChhh----HHHHhhcC----------CEEEEEECCHHHHHHHHHHcC
Confidence 344455677777775555 678999999998732 33443322 489999998877777666543
No 12
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.20 E-value=10 Score=35.47 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcC
Q 048299 175 TANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLG 254 (459)
Q Consensus 175 taNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lg 254 (459)
..-+.+++.+.-.+ ...|+|+|.+.|. +...++.+ .|+..++|+++.+...++.+.+++. .+
T Consensus 26 ~~~~~~~~~~~~~~-~~~vldiG~G~G~----~~~~~~~~--------~~~~~~~~~iD~~~~~~~~~~~~~~-----~~ 87 (223)
T TIGR01934 26 LWRRRAVKLIGVFK-GQKVLDVACGTGD----LAIELAKS--------APDRGKVTGVDFSSEMLEVAKKKSE-----LP 87 (223)
T ss_pred HHHHHHHHHhccCC-CCeEEEeCCCCCh----hHHHHHHh--------cCCCceEEEEECCHHHHHHHHHHhc-----cC
Confidence 33455666665555 7799999998885 33344432 2334789999998877777766553 22
Q ss_pred CeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCe-EEEEecCC
Q 048299 255 LRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRV-VTIAEREA 330 (459)
Q Consensus 255 vpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~i-v~~~E~ea 330 (459)
-..+|.. . +..+.. ..++..=+|-+.+.+|++ .+ ...+|+.+ +.|+|.- +++++...
T Consensus 88 ~~i~~~~--~-d~~~~~----------~~~~~~D~i~~~~~~~~~-~~-----~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 88 LNIEFIQ--A-DAEALP----------FEDNSFDAVTIAFGLRNV-TD-----IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCceEEe--c-chhcCC----------CCCCcEEEEEEeeeeCCc-cc-----HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 2334432 1 111111 112222233344456766 22 44556555 5688885 45556543
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.82 E-value=2.4 Score=37.41 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=55.2
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDP 269 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~ 269 (459)
.-.|+|+|.|.| . +...|+.+ |. ++||++.+...++. ..+.+.-.-.. .
T Consensus 23 ~~~vLDiGcG~G-~---~~~~l~~~--------~~---~~~g~D~~~~~~~~-----------~~~~~~~~~~~-----~ 71 (161)
T PF13489_consen 23 GKRVLDIGCGTG-S---FLRALAKR--------GF---EVTGVDISPQMIEK-----------RNVVFDNFDAQ-----D 71 (161)
T ss_dssp TSEEEEESSTTS-H---HHHHHHHT--------TS---EEEEEESSHHHHHH-----------TTSEEEEEECH-----T
T ss_pred CCEEEEEcCCCC-H---HHHHHHHh--------CC---EEEEEECCHHHHhh-----------hhhhhhhhhhh-----h
Confidence 679999999999 3 45555332 23 99999998777666 33333322011 0
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCC-eEEEEecCCCC
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPR-VVTIAEREASH 332 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~-iv~~~E~ea~~ 332 (459)
. ...++-.=+|-|...|||+. + ...+|+.|. .|+|. ++++.+...+.
T Consensus 72 ~----------~~~~~~fD~i~~~~~l~~~~-d-----~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 72 P----------PFPDGSFDLIICNDVLEHLP-D-----PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp H----------HCHSSSEEEEEEESSGGGSS-H-----HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred h----------hccccchhhHhhHHHHhhcc-c-----HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 0 01122233444445689983 2 556677664 68897 45555665443
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.65 E-value=9.8 Score=40.74 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=65.5
Q ss_pred HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC
Q 048299 176 ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL 255 (459)
Q Consensus 176 aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv 255 (459)
....+++.+.-.+ .-+|+|+|.|.|. +...|+.+.+ .++|||+.+.+.++.+.++. ...+.
T Consensus 254 ~te~l~~~~~~~~-~~~vLDiGcG~G~----~~~~la~~~~----------~~v~gvDiS~~~l~~A~~~~----~~~~~ 314 (475)
T PLN02336 254 TTKEFVDKLDLKP-GQKVLDVGCGIGG----GDFYMAENFD----------VHVVGIDLSVNMISFALERA----IGRKC 314 (475)
T ss_pred HHHHHHHhcCCCC-CCEEEEEeccCCH----HHHHHHHhcC----------CEEEEEECCHHHHHHHHHHh----hcCCC
Confidence 3455666665343 5689999999985 3455665443 38999999988877665543 23344
Q ss_pred eEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEEe
Q 048299 256 RFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIAE 327 (459)
Q Consensus 256 pFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~E 327 (459)
..+|.. . +..... +.++..=+|-|...++|+ .+ ...+|+.+ +.|+|.-.+++.
T Consensus 315 ~v~~~~--~-d~~~~~----------~~~~~fD~I~s~~~l~h~-~d-----~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 315 SVEFEV--A-DCTKKT----------YPDNSFDVIYSRDTILHI-QD-----KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred ceEEEE--c-CcccCC----------CCCCCEEEEEECCccccc-CC-----HHHHHHHHHHHcCCCeEEEEE
Confidence 556552 1 121111 111222234455557887 33 33455554 678999665443
No 15
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.65 E-value=0.47 Score=47.22 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=38.7
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERL 246 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL 246 (459)
.++|.|.|.+.|--.-+|--.|+..-. ....+..+|+|++.+...|+.+.+..
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~----~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLP----KAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhh----hcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 799999999999877666555554322 00235789999999998888776643
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=91.58 E-value=15 Score=36.27 Aligned_cols=191 Identities=15% Similarity=0.230 Sum_probs=113.6
Q ss_pred ccCCCcchh-hHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHH
Q 048299 164 QITPFIRFS-HLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRT 242 (459)
Q Consensus 164 ~~~P~~kfa-~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~et 242 (459)
...+++.|+ |.+=+++..+.+.-.+ --+|+|.+.|.|- +.-.|+..- | .-+|||++.+...|+..
T Consensus 26 ~~n~~~S~g~~~~Wr~~~i~~~~~~~-g~~vLDva~GTGd----~a~~~~k~~-------g--~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 26 LMNDLMSFGLHRLWRRALISLLGIKP-GDKVLDVACGTGD----MALLLAKSV-------G--TGEVVGLDISESMLEVA 91 (238)
T ss_pred hhcccccCcchHHHHHHHHHhhCCCC-CCEEEEecCCccH----HHHHHHHhc-------C--CceEEEEECCHHHHHHH
Confidence 445777887 6777887777765444 6889999988873 333344433 3 78999999999999988
Q ss_pred HHHHHHHHHHcCCe-EEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCC
Q 048299 243 GERLLKFAQSLGLR-FQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNP 320 (459)
Q Consensus 243 g~rL~~fA~~lgvp-FeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P 320 (459)
.+++.+. |+. ++|. .+ +.+.++ ..++-.=+|.+.|.||++. | .+.+|+-+ |=|+|
T Consensus 92 ~~k~~~~----~~~~i~fv--~~-dAe~LP----------f~D~sFD~vt~~fglrnv~-d-----~~~aL~E~~RVlKp 148 (238)
T COG2226 92 REKLKKK----GVQNVEFV--VG-DAENLP----------FPDNSFDAVTISFGLRNVT-D-----IDKALKEMYRVLKP 148 (238)
T ss_pred HHHhhcc----CccceEEE--Ee-chhhCC----------CCCCccCEEEeeehhhcCC-C-----HHHHHHHHHHhhcC
Confidence 8876653 322 5554 22 223332 3334444788888899983 3 56667665 56899
Q ss_pred CeEEEEecCCCCCCcchHHHHHHHHH-HHHH-HHHhhhhcCCCCcHHHHHHHHHHHhHhHHHHHhhcCCCccccccchhH
Q 048299 321 RVVTIAEREASHNHPLFLQRFVEAVD-HYGA-IFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDS 398 (459)
Q Consensus 321 ~iv~~~E~ea~~n~~~F~~RF~eaL~-~Ysa-lFDsLea~l~~~~~eR~~iE~~~lg~eI~niVA~eG~~R~eR~E~~~~ 398 (459)
...+++-.=.....+.| ...++ ||.. ++=.+......+..+. .++..-|. ++-..+.
T Consensus 149 gG~~~vle~~~p~~~~~----~~~~~~~~~~~v~P~~g~~~~~~~~~y-----~yL~eSi~------------~~p~~~~ 207 (238)
T COG2226 149 GGRLLVLEFSKPDNPVL----RKAYILYYFKYVLPLIGKLVAKDAEAY-----EYLAESIR------------RFPDQEE 207 (238)
T ss_pred CeEEEEEEcCCCCchhh----HHHHHHHHHHhHhhhhceeeecChHHH-----HHHHHHHH------------hCCCHHH
Confidence 98665544333333333 33333 3333 4444443333233222 22333333 3334456
Q ss_pred HHHHHHhCCCcccc
Q 048299 399 WEMILRSCGYSNVP 412 (459)
Q Consensus 399 W~~r~~~aGF~~~~ 412 (459)
-...|+.+||..+.
T Consensus 208 l~~~~~~~gf~~i~ 221 (238)
T COG2226 208 LKQMIEKAGFEEVR 221 (238)
T ss_pred HHHHHHhcCceEEe
Confidence 66778889998765
No 17
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.20 E-value=0.44 Score=39.66 Aligned_cols=97 Identities=25% Similarity=0.303 Sum_probs=55.1
Q ss_pred EEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCcc
Q 048299 193 ILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSV 272 (459)
Q Consensus 193 IIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~ 272 (459)
|+|+|.|.|.-=..|.+.+ +. + |..++|||+.+.+.++.+.++..+ .+++.+|. .. +..+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~---~~------~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~--~~-D~~~l~- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF---DA------G-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRFV--QA-DARDLP- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEE--ES-CTTCHH-
T ss_pred CEEeecCCcHHHHHHHHHh---hh------c-ccceEEEEECCHHHHHHHHHhchh----cCCceEEE--EC-CHhHCc-
Confidence 7999999997666666655 22 2 569999999999988877666555 45566664 22 222222
Q ss_pred ccccccccccCCCCe-EEEehhhhhhhhccCCCChhHHHHHHHHHh-cCC
Q 048299 273 AFYLPSALTILPDET-LAVNCMLFLHKLLKDHDTRDLRLFLHKIKA-LNP 320 (459)
Q Consensus 273 ~~~l~~~l~~~~~Ea-LaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~-L~P 320 (459)
...+.. +||.+...+||+.+ ..+..+|+.+.+ ++|
T Consensus 63 ---------~~~~~~D~v~~~~~~~~~~~~----~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 63 ---------FSDGKFDLVVCSGLSLHHLSP----EELEALLRRIARLLRP 99 (101)
T ss_dssp ---------HHSSSEEEEEE-TTGGGGSSH----HHHHHHHHHHHHTEEE
T ss_pred ---------ccCCCeeEEEEcCCccCCCCH----HHHHHHHHHHHHHhCC
Confidence 112222 34444555888733 367888887754 444
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.21 E-value=3.7 Score=38.70 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=66.0
Q ss_pred hHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcC
Q 048299 175 TANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLG 254 (459)
Q Consensus 175 taNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lg 254 (459)
++...|++++.-.+ .-+|+|+|.|.|.--. .||.+ + .++|||+.+...++.+.++ ++.-|
T Consensus 17 ~~~~~l~~~~~~~~-~~~vLDiGcG~G~~a~----~la~~-g----------~~V~~iD~s~~~l~~a~~~----~~~~~ 76 (195)
T TIGR00477 17 TTHSAVREAVKTVA-PCKTLDLGCGQGRNSL----YLSLA-G----------YDVRAWDHNPASIASVLDM----KAREN 76 (195)
T ss_pred CchHHHHHHhccCC-CCcEEEeCCCCCHHHH----HHHHC-C----------CeEEEEECCHHHHHHHHHH----HHHhC
Confidence 55678888887665 6689999999987433 34433 3 2799999988777665443 44557
Q ss_pred CeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeE
Q 048299 255 LRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVV 323 (459)
Q Consensus 255 vpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv 323 (459)
++..+.. .+ .+... +. ..=+.++.+.+ +|++.. ..+..+++.+ +.|+|.-.
T Consensus 77 ~~v~~~~--~d-~~~~~--------~~-~~fD~I~~~~~--~~~~~~----~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 77 LPLRTDA--YD-INAAA--------LN-EDYDFIFSTVV--FMFLQA----GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CCceeEe--cc-chhcc--------cc-CCCCEEEEecc--cccCCH----HHHHHHHHHHHHHhCCCcE
Confidence 7654442 11 11111 11 01134444333 677732 2566778776 57899964
No 19
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=89.49 E-value=3 Score=39.67 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=42.9
Q ss_pred hhHhHHHHHHHHhhh--CCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 172 SHLTANQAILESLQV--GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 172 a~ftaNqAILEA~~g--~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
++-.....+++.+.. .+ .-+|+|+|.|.|. +...|+.+ + .+||||+.+.+.+....+++.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~-~~~vLDiGcG~G~----~~~~la~~-~----------~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLK-GKRVLDAGCGTGL----LSIELAKR-G----------AIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHHHHHHHHHhcCCCC-CCEEEEEeCCCCH----HHHHHHHC-C----------CEEEEEECCHHHHHHHHHHHH
Confidence 455666777777763 33 6689999999985 55566543 2 279999999888877777664
No 20
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.37 E-value=19 Score=33.91 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=36.1
Q ss_pred HHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 180 ILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 180 ILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+++.+.-.+ ..+|+|+|.|.|. +...++.+ +|+..++|+++.+...++.+.+++.
T Consensus 43 ~~~~~~~~~-~~~vldiG~G~G~----~~~~l~~~--------~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 43 TIKWLGVRP-GDKVLDLACGTGD----LAIALAKA--------VGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred HHHHhCCCC-CCeEEEeCCCCCH----HHHHHHHH--------cCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 444444333 5789999999985 33334332 3347899999998877777666553
No 21
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=88.51 E-value=7.9 Score=39.77 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=61.0
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHH-c-CCeEEEEEeecCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQS-L-GLRFQFHPLLLMND 267 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~-l-gvpFeF~~v~~~~~ 267 (459)
...|+|+|.|.|. +...|+.+ + .+||||+.+...++...++..+.-.. . +...+|... ++
T Consensus 145 ~~~VLDlGcGtG~----~a~~la~~-g----------~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl 206 (315)
T PLN02585 145 GVTVCDAGCGTGS----LAIPLALE-G----------AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN---DL 206 (315)
T ss_pred CCEEEEecCCCCH----HHHHHHHC-C----------CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc---ch
Confidence 5689999999886 44555543 3 28999999998898877765432100 1 233455421 12
Q ss_pred CCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEe
Q 048299 268 DPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAE 327 (459)
Q Consensus 268 e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E 327 (459)
+.++ ..+ + +|-|...|+|+.++ ....+++.++.+.|..+++.-
T Consensus 207 ~~l~------~~f-----D--~Vv~~~vL~H~p~~----~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 207 ESLS------GKY-----D--TVTCLDVLIHYPQD----KADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred hhcC------CCc-----C--EEEEcCEEEecCHH----HHHHHHHHHHhhcCCEEEEEe
Confidence 2111 111 2 23344446776432 466788888888888776643
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=88.40 E-value=2.4 Score=37.92 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=60.5
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeecCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-FQFHPLLLMNDD 268 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-FeF~~v~~~~~e 268 (459)
..+|+|+|.|.|.. ...|+.+- .|..+||||+.+.+.++.+.. .++..+++ .+|.. . +..
T Consensus 4 ~~~iLDlGcG~G~~----~~~l~~~~--------~~~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~~--~-d~~ 64 (152)
T PF13847_consen 4 NKKILDLGCGTGRL----LIQLAKEL--------NPGAKIIGVDISEEMIEYAKK----RAKELGLDNIEFIQ--G-DIE 64 (152)
T ss_dssp TSEEEEET-TTSHH----HHHHHHHS--------TTTSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEEE--S-BTT
T ss_pred CCEEEEecCcCcHH----HHHHHHhc--------CCCCEEEEEECcHHHHHHhhc----ccccccccccceEE--e-ehh
Confidence 67899999999853 44455332 235669999999888776554 56667876 66652 2 222
Q ss_pred CCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEE-EecC
Q 048299 269 PTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTI-AERE 329 (459)
Q Consensus 269 ~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~-~E~e 329 (459)
+++ ..+. ..=+.+..+.. +|++. + +...+-+..+.|+|.-+++ ++..
T Consensus 65 ~l~------~~~~-~~~D~I~~~~~--l~~~~-~----~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 DLP------QELE-EKFDIIISNGV--LHHFP-D----PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp CGC------GCSS-TTEEEEEEEST--GGGTS-H----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccc------cccC-CCeeEEEEcCc--hhhcc-C----HHHHHHHHHHHcCCCcEEEEEECC
Confidence 232 1111 11134444444 57762 2 3333344467889885544 4444
No 23
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=88.38 E-value=7.9 Score=36.96 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=59.0
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCc
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTS 271 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~ 271 (459)
.|+|+|.|.|..-.. |+..- |..++|||+.+.+.++.+.+++. ++.+ . ..+-.+.
T Consensus 46 ~VLDiGCG~G~~~~~----L~~~~---------~~~~v~giDiS~~~l~~A~~~~~------~~~~--~--~~d~~~~-- 100 (204)
T TIGR03587 46 SILELGANIGMNLAA----LKRLL---------PFKHIYGVEINEYAVEKAKAYLP------NINI--I--QGSLFDP-- 100 (204)
T ss_pred cEEEEecCCCHHHHH----HHHhC---------CCCeEEEEECCHHHHHHHHhhCC------CCcE--E--EeeccCC--
Confidence 599999999954444 43321 23589999999888887655431 2322 2 1111111
Q ss_pred cccccccccccCCC--CeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEecCC
Q 048299 272 VAFYLPSALTILPD--ETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREA 330 (459)
Q Consensus 272 ~~~~l~~~l~~~~~--EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E~ea 330 (459)
..++ ++|+ |...|||+.+ ..+..+++.+.+..-+.++++|...
T Consensus 101 ----------~~~~sfD~V~--~~~vL~hl~p----~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ----------FKDNFFDLVL--TKGVLIHINP----DNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ----------CCCCCEEEEE--ECChhhhCCH----HHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1112 3344 4444788732 3577888888887778888888754
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=88.32 E-value=6.6 Score=37.06 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC
Q 048299 176 ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL 255 (459)
Q Consensus 176 aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv 255 (459)
+++.+++.+...+ .-.|+|+|.|.|. +.-.||.+ + .+||||+.+.+.++.+.++. +..++
T Consensus 18 ~~~~l~~~l~~~~-~~~vLDiGcG~G~----~a~~La~~-g----------~~V~gvD~S~~~i~~a~~~~----~~~~~ 77 (197)
T PRK11207 18 THSEVLEAVKVVK-PGKTLDLGCGNGR----NSLYLAAN-G----------FDVTAWDKNPMSIANLERIK----AAENL 77 (197)
T ss_pred ChHHHHHhcccCC-CCcEEEECCCCCH----HHHHHHHC-C----------CEEEEEeCCHHHHHHHHHHH----HHcCC
Confidence 3456666665554 5689999999987 33345543 3 28999999887777655443 33454
Q ss_pred e-EEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEE
Q 048299 256 R-FQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVT 324 (459)
Q Consensus 256 p-FeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~ 324 (459)
+ .++. .. +..... +. ..=+.|+.+.+ +|++.. ..+..+++.+ +.|+|.-.+
T Consensus 78 ~~v~~~--~~-d~~~~~--------~~-~~fD~I~~~~~--~~~~~~----~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 78 DNLHTA--VV-DLNNLT--------FD-GEYDFILSTVV--LMFLEA----KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CcceEE--ec-ChhhCC--------cC-CCcCEEEEecc--hhhCCH----HHHHHHHHHHHHHcCCCcEE
Confidence 3 3333 22 222211 11 11134444433 577632 2567777776 578999753
No 25
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=88.21 E-value=6.7 Score=39.70 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=70.1
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDP 269 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~ 269 (459)
...|||+|.|.|.-=..|++++. +..++|+|+-+.+.|+.+.++|.+- --++++++ +..+-.+.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~------------~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~--i~gD~~~~ 127 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR------------QPARYVPIDISADALKESAAALAAD--YPQLEVHG--ICADFTQP 127 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc------------cCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEE--EEEcccch
Confidence 35799999999966666666652 1467999999999999999988642 12454443 33322221
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEEEe
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTIAE 327 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~~E 327 (459)
... +.. ...+..+++.+...++++..+ ....+|+.|+ .|+|.-..++.
T Consensus 128 ~~~----~~~--~~~~~~~~~~~gs~~~~~~~~----e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 128 LAL----PPE--PAAGRRLGFFPGSTIGNFTPE----EAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhh----hcc--cccCCeEEEEecccccCCCHH----HHHHHHHHHHHhcCCCCEEEEe
Confidence 211 111 112246677666667887432 5678888885 68998555543
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=87.96 E-value=14 Score=38.14 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=57.4
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC--eEEEEEeecCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL--RFQFHPLLLMND 267 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv--pFeF~~v~~~~~ 267 (459)
.-.|+|+|.|.|. +...|+. .+ .++|||+.+.+.++...++ ++..++ ..+|... +.
T Consensus 132 g~~ILDIGCG~G~----~s~~La~-~g----------~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~~---da 189 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLAR-MG----------ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLCT---TA 189 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHH-cC----------CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEec---CH
Confidence 3479999999997 4556664 33 3799999998877766544 222221 3444421 12
Q ss_pred CCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEEEe
Q 048299 268 DPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTIAE 327 (459)
Q Consensus 268 e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~~E 327 (459)
+++. ..++..=+|-|...|||+. + .+.+|+.++ -|+|.-.+++.
T Consensus 190 e~l~----------~~~~~FD~Vi~~~vLeHv~-d-----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 190 EKLA----------DEGRKFDAVLSLEVIEHVA-N-----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred HHhh----------hccCCCCEEEEhhHHHhcC-C-----HHHHHHHHHHHcCCCcEEEEE
Confidence 2221 1112122344555689983 3 346777764 67999655543
No 27
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=87.57 E-value=6 Score=38.24 Aligned_cols=110 Identities=23% Similarity=0.278 Sum_probs=61.2
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..++++..=.. .-+|||+|-+.| .+..+|+.+. |.||+|..+.|. .++.+.+ .=..
T Consensus 90 ~~~~~~~d~~~-~~~vvDvGGG~G----~~~~~l~~~~---------P~l~~~v~Dlp~-v~~~~~~---------~~rv 145 (241)
T PF00891_consen 90 DILLEAFDFSG-FKTVVDVGGGSG----HFAIALARAY---------PNLRATVFDLPE-VIEQAKE---------ADRV 145 (241)
T ss_dssp HHHHHHSTTTT-SSEEEEET-TTS----HHHHHHHHHS---------TTSEEEEEE-HH-HHCCHHH---------TTTE
T ss_pred hhhhccccccC-ccEEEeccCcch----HHHHHHHHHC---------CCCcceeeccHh-hhhcccc---------cccc
Confidence 45566665554 668999999999 4445555433 688999998643 3332222 2234
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCC---eEEEEecCCC
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPR---VVTIAEREAS 331 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~---iv~~~E~ea~ 331 (459)
+|.+ .+-.+.+ .. .+++.+.-+ ||+..++ ....+|+.++ .|.|. .+++.|.-.+
T Consensus 146 ~~~~--gd~f~~~----------P~--~D~~~l~~v--Lh~~~d~----~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 146 EFVP--GDFFDPL----------PV--ADVYLLRHV--LHDWSDE----DCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEE--S-TTTCC----------SS--ESEEEEESS--GGGS-HH----HHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred cccc--ccHHhhh----------cc--ccceeeehh--hhhcchH----HHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 4442 1111211 11 344444444 7887443 5667777774 78987 6777786544
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=87.54 E-value=5.4 Score=38.86 Aligned_cols=56 Identities=25% Similarity=0.410 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHH
Q 048299 176 ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGER 245 (459)
Q Consensus 176 aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~r 245 (459)
-+..+++.+.-.+ .-+|+|+|.|.| .+...|+.+. |..+++||+.+...++.+.++
T Consensus 19 ~~~~ll~~~~~~~-~~~vLDiGcG~G----~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~ 74 (258)
T PRK01683 19 PARDLLARVPLEN-PRYVVDLGCGPG----NSTELLVERW---------PAARITGIDSSPAMLAEARSR 74 (258)
T ss_pred HHHHHHhhCCCcC-CCEEEEEcccCC----HHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHh
Confidence 3556677665554 678999999998 3345566543 245899999988777666554
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=86.52 E-value=9.6 Score=37.23 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEE
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQ 258 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFe 258 (459)
.+++.+.-.+ .-+|+|+|.|.|. +...|+.+- |..++|||+.+...++.+. ..++.|.
T Consensus 20 ~ll~~l~~~~-~~~vLDlGcG~G~----~~~~l~~~~---------p~~~v~gvD~s~~~~~~a~--------~~~~~~~ 77 (255)
T PRK14103 20 DLLARVGAER-ARRVVDLGCGPGN----LTRYLARRW---------PGAVIEALDSSPEMVAAAR--------ERGVDAR 77 (255)
T ss_pred HHHHhCCCCC-CCEEEEEcCCCCH----HHHHHHHHC---------CCCEEEEEECCHHHHHHHH--------hcCCcEE
Confidence 4666665444 5689999999983 555666542 2458999999877666543 3355432
Q ss_pred EEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHH-HHhcCCCeEEEEec
Q 048299 259 FHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHK-IKALNPRVVTIAER 328 (459)
Q Consensus 259 F~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~-ir~L~P~iv~~~E~ 328 (459)
.. ..+... ....=+.|+.|.. |||+ ++ + ..+|+. .+.|+|.-.+++..
T Consensus 78 ----~~-d~~~~~---------~~~~fD~v~~~~~--l~~~-~d----~-~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 78 ----TG-DVRDWK---------PKPDTDVVVSNAA--LQWV-PE----H-ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ----Ec-ChhhCC---------CCCCceEEEEehh--hhhC-CC----H-HHHHHHHHHhCCCCcEEEEEc
Confidence 11 111111 0011144455444 6887 33 3 345555 56799996655543
No 30
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=85.82 E-value=6.1 Score=39.56 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=76.2
Q ss_pred hhHhHHHHHHHHhhhCC---ceEEEEEcccCCCC-CcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 172 SHLTANQAILESLQVGQ---QSIHILDFDIMHGV-QWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 172 a~ftaNqAILEA~~g~~---~~VHIIDf~I~~G~-QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+++++-..||+.+...- +--+|+|||-|-|. =|. .+.- =+....+|.|+.+...+ +.++.|.
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wA-------a~~~------~~~~~~~~~vd~s~~~~-~l~~~l~ 78 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWA-------AREV------WPSLKEYTCVDRSPEML-ELAKRLL 78 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHH-------HHHH------hcCceeeeeecCCHHHH-HHHHHHH
Confidence 56777788888776321 24589999999884 332 2222 22367899999877655 4566655
Q ss_pred HHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEE
Q 048299 248 KFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIA 326 (459)
Q Consensus 248 ~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~ 326 (459)
+-..... ..+...... .....+.+.+.|++.-+ |-.|. +..+..+++.+ ..++| ++|++
T Consensus 79 ~~~~~~~-~~~~~~~~~------------~~~~~~~~~DLvi~s~~--L~EL~----~~~r~~lv~~LW~~~~~-~LVlV 138 (274)
T PF09243_consen 79 RAGPNNR-NAEWRRVLY------------RDFLPFPPDDLVIASYV--LNELP----SAARAELVRSLWNKTAP-VLVLV 138 (274)
T ss_pred hcccccc-cchhhhhhh------------cccccCCCCcEEEEehh--hhcCC----chHHHHHHHHHHHhccC-cEEEE
Confidence 4222111 001110010 01122333344333322 34442 24678888888 45566 88899
Q ss_pred ecCCCCCCcchHHHHHHHH
Q 048299 327 EREASHNHPLFLQRFVEAV 345 (459)
Q Consensus 327 E~ea~~n~~~F~~RF~eaL 345 (459)
|+..- .+-..+.+.++.|
T Consensus 139 EpGt~-~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 139 EPGTP-AGFRRIAEARDQL 156 (274)
T ss_pred cCCCh-HHHHHHHHHHHHH
Confidence 98754 3345666666666
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.66 E-value=12 Score=40.16 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=61.9
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..|++.+.... .-+|+|+|.|.|. +...|+.+ + + ++|||+.+...++.... + . ...-..
T Consensus 27 ~~il~~l~~~~-~~~vLDlGcG~G~----~~~~la~~-~------~----~v~giD~s~~~l~~a~~-~---~-~~~~~i 85 (475)
T PLN02336 27 PEILSLLPPYE-GKSVLELGAGIGR----FTGELAKK-A------G----QVIALDFIESVIKKNES-I---N-GHYKNV 85 (475)
T ss_pred hHHHhhcCccC-CCEEEEeCCCcCH----HHHHHHhh-C------C----EEEEEeCCHHHHHHHHH-H---h-ccCCce
Confidence 45666666544 4589999999994 44445543 2 2 78999988877764322 1 1 111123
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEEE
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTIA 326 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~~ 326 (459)
+|. .. +..... +...++..=+|-|.+.+||+.++ .+..+|+.++ -|+|.-.++.
T Consensus 86 ~~~--~~-d~~~~~--------~~~~~~~fD~I~~~~~l~~l~~~----~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 86 KFM--CA-DVTSPD--------LNISDGSVDLIFSNWLLMYLSDK----EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEE--Ee-cccccc--------cCCCCCCEEEEehhhhHHhCCHH----HHHHHHHHHHHhcCCCeEEEE
Confidence 333 11 111111 11122322244455668998432 4677777765 5899965544
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=84.73 E-value=39 Score=33.18 Aligned_cols=102 Identities=19% Similarity=0.322 Sum_probs=54.9
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC-eEEEEEeecCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL-RFQFHPLLLMNDD 268 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv-pFeF~~v~~~~~e 268 (459)
.=+|+|+|.|.|.- .. .++...+ +.-+||+|+.+...++.+.++.. ..|+ ..+|. . .+.+
T Consensus 78 g~~VLDiG~G~G~~-~~---~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~----~~g~~~v~~~--~-~d~~ 138 (272)
T PRK11873 78 GETVLDLGSGGGFD-CF---LAARRVG--------PTGKVIGVDMTPEMLAKARANAR----KAGYTNVEFR--L-GEIE 138 (272)
T ss_pred CCEEEEeCCCCCHH-HH---HHHHHhC--------CCCEEEEECCCHHHHHHHHHHHH----HcCCCCEEEE--E-cchh
Confidence 34899999988742 11 2232222 45589999998888877666543 3444 23333 1 1222
Q ss_pred CCccccccccccccCCC--CeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCe-EEEEe
Q 048299 269 PTSVAFYLPSALTILPD--ETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRV-VTIAE 327 (459)
Q Consensus 269 ~~~~~~~l~~~l~~~~~--EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~i-v~~~E 327 (459)
.+. +.++ +.|+.|+. +|+. .+ ....+=...+-|+|.- +++.+
T Consensus 139 ~l~----------~~~~~fD~Vi~~~v--~~~~-~d----~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 139 ALP----------VADNSVDVIISNCV--INLS-PD----KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred hCC----------CCCCceeEEEEcCc--ccCC-CC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 221 1122 45666766 4554 32 2333444457789984 44444
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=84.66 E-value=9.6 Score=37.29 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=62.2
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..|++.+. .+ .-+|+|+|.|.|. +...|+.+ + .++|+|+.+.+.++.+.+++.+ .|+.-
T Consensus 35 ~~~l~~l~-~~-~~~vLDiGcG~G~----~a~~la~~-g----------~~v~~vD~s~~~l~~a~~~~~~----~g~~~ 93 (255)
T PRK11036 35 DRLLAELP-PR-PLRVLDAGGGEGQ----TAIKLAEL-G----------HQVILCDLSAEMIQRAKQAAEA----KGVSD 93 (255)
T ss_pred HHHHHhcC-CC-CCEEEEeCCCchH----HHHHHHHc-C----------CEEEEEECCHHHHHHHHHHHHh----cCCcc
Confidence 45677765 33 5699999999993 45556653 2 3799999998888877665543 45432
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEE
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIA 326 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~ 326 (459)
....+.. +.+++. ...++..=+|-|...||++ .+ +...+-...+-|+|.-.+++
T Consensus 94 ~v~~~~~-d~~~l~---------~~~~~~fD~V~~~~vl~~~-~~----~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 94 NMQFIHC-AAQDIA---------QHLETPVDLILFHAVLEWV-AD----PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred ceEEEEc-CHHHHh---------hhcCCCCCEEEehhHHHhh-CC----HHHHHHHHHHHcCCCeEEEE
Confidence 2221121 111111 0011211123344557887 33 33333344567899965543
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=84.42 E-value=3.9 Score=40.09 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=70.4
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDP 269 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~ 269 (459)
--.|+|+|.|-|.+= +-|++|= |-=.||||+++.+.|+++.++ ....+|..--...|..
T Consensus 31 ~~~v~DLGCGpGnsT----elL~~Rw---------P~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~p 89 (257)
T COG4106 31 PRRVVDLGCGPGNST----ELLARRW---------PDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWKP 89 (257)
T ss_pred cceeeecCCCCCHHH----HHHHHhC---------CCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcCC
Confidence 567999999999763 4455554 456899999999888775444 4555665322222322
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEecCCCCCCc
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHP 335 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E~ea~~n~~ 335 (459)
- .+-..|.-|.+| |-| +| ..+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 90 ~------------~~~dllfaNAvl--qWl-pd----H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 90 E------------QPTDLLFANAVL--QWL-PD----HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred C------------Cccchhhhhhhh--hhc-cc----cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 1 123466777775 444 55 56778888999999998888766665554
No 35
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.35 E-value=22 Score=36.66 Aligned_cols=152 Identities=17% Similarity=0.077 Sum_probs=92.4
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-E
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-F 257 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-F 257 (459)
.|..++. . ...|||||.|.|..=..||++|.... ...+-.+|+-+.+.|+++.++|. .-..| .
T Consensus 69 ~Ia~~i~--~-~~~lIELGsG~~~Kt~~LL~aL~~~~---------~~~~Y~plDIS~~~L~~a~~~L~----~~~~p~l 132 (319)
T TIGR03439 69 DIAASIP--S-GSMLVELGSGNLRKVGILLEALERQK---------KSVDYYALDVSRSELQRTLAELP----LGNFSHV 132 (319)
T ss_pred HHHHhcC--C-CCEEEEECCCchHHHHHHHHHHHhcC---------CCceEEEEECCHHHHHHHHHhhh----hccCCCe
Confidence 4555553 2 44799999999999999999997322 24688999999999999999997 12345 7
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHh--cCCCeEEEEecCCC----
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKA--LNPRVVTIAEREAS---- 331 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~--L~P~iv~~~E~ea~---- 331 (459)
+++++..+-.+.+.+ ++. -.....-.++.-.-..+.++ ++.....||+.+++ |+|.=..++=.|..
T Consensus 133 ~v~~l~gdy~~~l~~---l~~-~~~~~~~r~~~flGSsiGNf----~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~ 204 (319)
T TIGR03439 133 RCAGLLGTYDDGLAW---LKR-PENRSRPTTILWLGSSIGNF----SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPD 204 (319)
T ss_pred EEEEEEecHHHHHhh---ccc-ccccCCccEEEEeCccccCC----CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 888877643332221 011 00111123333333345555 23467799999987 89974444422321
Q ss_pred -----CCCc-ch-HHHHHHHHHHHHHHHHh
Q 048299 332 -----HNHP-LF-LQRFVEAVDHYGAIFDS 354 (459)
Q Consensus 332 -----~n~~-~F-~~RF~eaL~~YsalFDs 354 (459)
+|.+ .. .....+.|.+--..+++
T Consensus 205 ~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 205 KVLRAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 3443 23 33445667776666654
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=84.01 E-value=14 Score=36.89 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=62.4
Q ss_pred HHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe
Q 048299 177 NQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR 256 (459)
Q Consensus 177 NqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp 256 (459)
...+++++..-+ .-+|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.+ .|+..+++
T Consensus 109 ~~~~~~~~~~~~-~~~vLDlGcG~G~----~~~~la~~-g----------~~V~avD~s~~ai~~~~~----~~~~~~l~ 168 (287)
T PRK12335 109 HSEVLEAVQTVK-PGKALDLGCGQGR----NSLYLALL-G----------FDVTAVDINQQSLENLQE----IAEKENLN 168 (287)
T ss_pred cHHHHHHhhccC-CCCEEEeCCCCCH----HHHHHHHC-C----------CEEEEEECCHHHHHHHHH----HHHHcCCc
Confidence 344556554333 2389999999986 33445542 2 389999998877766543 45556776
Q ss_pred EEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeE
Q 048299 257 FQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVV 323 (459)
Q Consensus 257 FeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv 323 (459)
+++.. . ..+... +. ..=+.++.+.. ||++.. ..+..+++.+ +.|+|.-+
T Consensus 169 v~~~~--~-D~~~~~--------~~-~~fD~I~~~~v--l~~l~~----~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 169 IRTGL--Y-DINSAS--------IQ-EEYDFILSTVV--LMFLNR----ERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred eEEEE--e-chhccc--------cc-CCccEEEEcch--hhhCCH----HHHHHHHHHHHHhcCCCcE
Confidence 66542 1 111111 10 01134444443 677732 2567778776 57899854
No 37
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=82.48 E-value=22 Score=36.86 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=69.0
Q ss_pred HHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe
Q 048299 177 NQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR 256 (459)
Q Consensus 177 NqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp 256 (459)
...+++.+.... .=+|+|+|.|.|. +-..++.+. |..++|+|+.+...++.+.+++.+ .++.
T Consensus 185 t~lLl~~l~~~~-~g~VLDlGCG~G~----ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~----n~l~ 246 (342)
T PRK09489 185 SQLLLSTLTPHT-KGKVLDVGCGAGV----LSAVLARHS---------PKIRLTLSDVSAAALESSRATLAA----NGLE 246 (342)
T ss_pred HHHHHHhccccC-CCeEEEeccCcCH----HHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHH----cCCC
Confidence 355666665443 3379999999997 444555442 357899999998888888776654 3555
Q ss_pred EEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEE
Q 048299 257 FQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIA 326 (459)
Q Consensus 257 FeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~ 326 (459)
.++.. .+..+.+. .+=+.++.|-+| |..... .......+++.+ +.|+|.-..+.
T Consensus 247 ~~~~~--~D~~~~~~-----------~~fDlIvsNPPF--H~g~~~-~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 247 GEVFA--SNVFSDIK-----------GRFDMIISNPPF--HDGIQT-SLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred CEEEE--cccccccC-----------CCccEEEECCCc--cCCccc-cHHHHHHHHHHHHHhcCcCCEEEE
Confidence 55542 21111110 112677788775 554322 223455666665 56999854444
No 38
>PRK05785 hypothetical protein; Provisional
Probab=82.19 E-value=40 Score=32.58 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=28.5
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGE 244 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~ 244 (459)
.-.|+|+|.|.|.- ...|+.+.+ .+||||+.+.+.++....
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----------~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----------YYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----------CEEEEECCCHHHHHHHHh
Confidence 34799999999943 344544322 379999999888876543
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=80.51 E-value=51 Score=30.90 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhC--CceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 176 ANQAILESLQVG--QQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 176 aNqAILEA~~g~--~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
....+++.+... .+..+|+|+|.|.|. +...|+.+ + |..++|+++.+.+.++.+.+++.
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~----~~~~l~~~-~--------~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGY----LTRALLKR-F--------PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccH----HHHHHHHh-C--------CCCcEEEEeChHHHHHHHHHhcC
Confidence 334455555432 124689999999995 33344432 1 35679999988877766665543
No 40
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=79.66 E-value=11 Score=38.99 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=67.0
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHc---CCeEEEEE--eec
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSL---GLRFQFHP--LLL 264 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~l---gvpFeF~~--v~~ 264 (459)
..+|+|++.|.|.= |..-...+ -=++.||+...+.++++.+|..+.-+.. ...+.|.. +..
T Consensus 63 ~~~VLDl~CGkGGD---L~Kw~~~~-----------i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~ 128 (331)
T PF03291_consen 63 GLTVLDLCCGKGGD---LQKWQKAK-----------IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAA 128 (331)
T ss_dssp T-EEEEET-TTTTT---HHHHHHTT------------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEES
T ss_pred CCeEEEecCCCchh---HHHHHhcC-----------CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecc
Confidence 78999999999852 22222222 2367899999999999999986555321 22333332 233
Q ss_pred CCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEE-EEecCC
Q 048299 265 MNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVT-IAEREA 330 (459)
Q Consensus 265 ~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~-~~E~ea 330 (459)
+.... . +...+.-..+..=+|+|.|.||+.... ......+|+.| ..|+|.-+. .+-.++
T Consensus 129 D~f~~-~----l~~~~~~~~~~FDvVScQFalHY~Fes--e~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 129 DCFSE-S----LREKLPPRSRKFDVVSCQFALHYAFES--EEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTCCS-H----HHCTSSSTTS-EEEEEEES-GGGGGSS--HHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccc-h----hhhhccccCCCcceeehHHHHHHhcCC--HHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22211 1 112222223466689999999999753 23456677777 578998543 334443
No 41
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=78.95 E-value=45 Score=30.27 Aligned_cols=82 Identities=18% Similarity=0.026 Sum_probs=43.9
Q ss_pred eEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHH
Q 048299 230 TGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLR 309 (459)
Q Consensus 230 T~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~ 309 (459)
|||+.+.+.|+...++....+....-..+|. .. +.+++. ..++..=+|-+.+.||++ .+ +.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~--~~-d~~~lp----------~~~~~fD~v~~~~~l~~~-~d-----~~ 61 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWI--EG-DAIDLP----------FDDCEFDAVTMGYGLRNV-VD-----RL 61 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEE--Ee-chhhCC----------CCCCCeeEEEecchhhcC-CC-----HH
Confidence 6888888888887666543332222234444 21 122222 222222233455668887 33 45
Q ss_pred HHHHHH-HhcCCC-eEEEEecCC
Q 048299 310 LFLHKI-KALNPR-VVTIAEREA 330 (459)
Q Consensus 310 ~~L~~i-r~L~P~-iv~~~E~ea 330 (459)
.+|+.+ |-|+|. .+++.|-..
T Consensus 62 ~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 62 RAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHHHHHHHcCcCeEEEEEECCC
Confidence 566665 679998 455666553
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=76.94 E-value=9.5 Score=37.79 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=63.8
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDP 269 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~ 269 (459)
..-|+|+|.|-| .|-+.+|+. | ..+|||+-+...++.+. ..|.+-|+..+|....+..+..
T Consensus 60 g~~vLDvGCGgG----~Lse~mAr~--------G---a~VtgiD~se~~I~~Ak----~ha~e~gv~i~y~~~~~edl~~ 120 (243)
T COG2227 60 GLRVLDVGCGGG----ILSEPLARL--------G---ASVTGIDASEKPIEVAK----LHALESGVNIDYRQATVEDLAS 120 (243)
T ss_pred CCeEEEecCCcc----HhhHHHHHC--------C---CeeEEecCChHHHHHHH----HhhhhccccccchhhhHHHHHh
Confidence 556999999988 777888763 3 68999998877766543 3566778888887544322111
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHH-HHhcCCCeEEE
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHK-IKALNPRVVTI 325 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~-ir~L~P~iv~~ 325 (459)
. + +-.=||-||=-|+|+ ++ +. .|++. .+-++|.-+++
T Consensus 121 ~----------~---~~FDvV~cmEVlEHv-~d----p~-~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 121 A----------G---GQFDVVTCMEVLEHV-PD----PE-SFLRACAKLVKPGGILF 158 (243)
T ss_pred c----------C---CCccEEEEhhHHHcc-CC----HH-HHHHHHHHHcCCCcEEE
Confidence 0 0 223367787779999 33 33 35555 56779985444
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=75.41 E-value=51 Score=33.96 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=57.3
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC--eEEEEEeecCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL--RFQFHPLLLMND 267 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv--pFeF~~v~~~~~ 267 (459)
.-+|+|+|.|.|. +...|+.+-+ .++|||+.+...++.+.++ ++..|+ ..+|. ..+ .
T Consensus 119 ~~~VLDiGCG~G~----~~~~La~~~g----------~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~--~~D-~ 177 (340)
T PLN02244 119 PKRIVDVGCGIGG----SSRYLARKYG----------ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQ--VAD-A 177 (340)
T ss_pred CCeEEEecCCCCH----HHHHHHHhcC----------CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEE--EcC-c
Confidence 4579999999985 4556665443 3899999887766655443 334454 35554 222 1
Q ss_pred CCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHH-HHhcCCCe-EEEEe
Q 048299 268 DPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHK-IKALNPRV-VTIAE 327 (459)
Q Consensus 268 e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~-ir~L~P~i-v~~~E 327 (459)
.+.. ..++..=+|-|...+||+. + ...+|+. .|-|+|.- +++++
T Consensus 178 ~~~~----------~~~~~FD~V~s~~~~~h~~-d-----~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 178 LNQP----------FEDGQFDLVWSMESGEHMP-D-----KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccCC----------CCCCCccEEEECCchhccC-C-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 1211 1223222344555678883 3 3455554 57889974 44443
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=74.79 E-value=41 Score=31.75 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHhhh---CCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 176 ANQAILESLQV---GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 176 aNqAILEA~~g---~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
.-+.+++.+.. .+ .-.|+|+|.|.|. +...|+.+ ++ ++||++.+...++.+.++..
T Consensus 48 ~~~~~~~~l~~~~~~~-~~~vLDvGcG~G~----~~~~l~~~--------~~---~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 48 MRDTVLSWLPADGDLT-GLRILDAGCGVGS----LSIPLARR--------GA---KVVASDISPQMVEEARERAP 106 (230)
T ss_pred HHHHHHHHHHhcCCCC-CCEEEEEeCCCCH----HHHHHHHc--------CC---EEEEEECCHHHHHHHHHHHH
Confidence 33445555443 23 5689999999885 33445532 21 39999999888887776654
No 45
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=74.38 E-value=40 Score=35.82 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=46.6
Q ss_pred eEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEecCCCCCCcchHHHHHHHHHHHHHHHHhhhhcCCCCcHHH
Q 048299 287 TLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRER 366 (459)
Q Consensus 287 aLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E~ea~~n~~~F~~RF~eaL~~YsalFDsLea~l~~~~~eR 366 (459)
.++||+.-..+= -..++.-...|...+|++|+..|.+ |...++.+=.++..| ....++..++.-.||
T Consensus 174 ~ilIdT~GWi~G------~~g~elk~~li~~ikP~~Ii~l~~~---~~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER 240 (398)
T COG1341 174 FILIDTDGWIKG------WGGLELKRALIDAIKPDLIIALERA---NELSPLLEGVESIVY----LKVPDAVAPRSREER 240 (398)
T ss_pred EEEEcCCCceeC------chHHHHHHHHHhhcCCCEEEEeccc---cccchhhhcccCceE----EeccccccccChhHH
Confidence 446666644331 1357777788899999999999987 344444444444444 333445556666666
Q ss_pred HHHHHHHHhHhHHH
Q 048299 367 LAVEQVWFGREIVE 380 (459)
Q Consensus 367 ~~iE~~~lg~eI~n 380 (459)
...=..-+.+.+.+
T Consensus 241 ~~~R~e~~~ryf~~ 254 (398)
T COG1341 241 KELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHHHhccC
Confidence 54322344444443
No 46
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=73.80 E-value=40 Score=34.66 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHH
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQR 241 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~e 241 (459)
+|++.+...+ .=+|+|+|.|.|. ++..++.+ + + . +++||+++...+.+
T Consensus 112 ~~l~~l~~~~-g~~VLDvGCG~G~----~~~~~~~~-g-------~-~-~v~GiDpS~~ml~q 159 (314)
T TIGR00452 112 RVLPHLSPLK-GRTILDVGCGSGY----HMWRMLGH-G-------A-K-SLVGIDPTVLFLCQ 159 (314)
T ss_pred HHHHhcCCCC-CCEEEEeccCCcH----HHHHHHHc-C-------C-C-EEEEEcCCHHHHHH
Confidence 3555443333 3479999999986 34444432 2 3 2 78999988766544
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=72.09 E-value=52 Score=31.05 Aligned_cols=101 Identities=24% Similarity=0.309 Sum_probs=55.8
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCc
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTS 271 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~ 271 (459)
+|+|+|.|.|. +...++.+- |..++|||+.+.+.++...+++. ..|+.-....+..+..+. .
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~----~~gl~~~i~~~~~d~~~~-~ 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---------PHLQLHGYTISPEQAEVGRERIR----ALGLQGRIRIFYRDSAKD-P 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHH----hcCCCcceEEEecccccC-C
Confidence 68999988875 344555533 24689999998877777666543 345543333222221111 1
Q ss_pred cccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeE-EEEe
Q 048299 272 VAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVV-TIAE 327 (459)
Q Consensus 272 ~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv-~~~E 327 (459)
. +..+ +. |-+...+||+ .+ .+.+|+.+ +.|+|.-. ++.+
T Consensus 64 ~----~~~f-----D~--I~~~~~l~~~-~~-----~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 F----PDTY-----DL--VFGFEVIHHI-KD-----KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred C----CCCC-----CE--eehHHHHHhC-CC-----HHHHHHHHHHHcCCCCEEEEEE
Confidence 0 1111 23 3344446777 32 45677777 46899944 4444
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=71.82 E-value=38 Score=35.77 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=67.9
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..+++.+.... .=.|+|+|.|.|. +--.++.+. |..+||+|+.+...++.+.+++......-.-.+
T Consensus 218 rllL~~lp~~~-~~~VLDLGCGtGv----i~i~la~~~---------P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 218 RFFMQHLPENL-EGEIVDLGCGNGV----IGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred HHHHHhCCccc-CCeEEEEeccccH----HHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccCceE
Confidence 44566665433 2379999999997 334455432 467999999998888888777654321111134
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEEec
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIAER 328 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~E~ 328 (459)
+|. ..+..+.+. -..=+.|+.|-.|...+-..+ .....+++.+ +.|+|.-.+.++.
T Consensus 284 ~~~--~~D~l~~~~----------~~~fDlIlsNPPfh~~~~~~~---~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 EFM--INNALSGVE----------PFRFNAVLCNPPFHQQHALTD---NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEE--EccccccCC----------CCCEEEEEECcCcccCccCCH---HHHHHHHHHHHHhcccCCEEEEEE
Confidence 443 222222211 011157777877643222121 2234555544 5789996655553
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=71.14 E-value=1e+02 Score=29.75 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=38.3
Q ss_pred hHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHH
Q 048299 173 HLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGER 245 (459)
Q Consensus 173 ~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~r 245 (459)
+-..-..+++.+...+ .-+|+|+|.|.|. +.+.|+.+ + -++|+++.+.+.++...++
T Consensus 27 q~~~a~~l~~~l~~~~-~~~vLDiGcG~G~----~~~~l~~~-~----------~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 27 QRQSADALLAMLPQRK-FTHVLDAGCGPGW----MSRYWRER-G----------SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHhcCccC-CCeEEEeeCCCCH----HHHHHHHc-C----------CeEEEEECCHHHHHHHHhh
Confidence 3345556677776543 5579999999983 55566542 2 3799999988777665444
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=70.63 E-value=47 Score=34.94 Aligned_cols=108 Identities=17% Similarity=0.290 Sum_probs=60.2
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..|++.+.-.+ .=+|+|+|.|.|. +...++.+.+ .++|||+.+.+.++.+.++.. ++..
T Consensus 157 ~~l~~~l~l~~-g~rVLDIGcG~G~----~a~~la~~~g----------~~V~giDlS~~~l~~A~~~~~------~l~v 215 (383)
T PRK11705 157 DLICRKLQLKP-GMRVLDIGCGWGG----LARYAAEHYG----------VSVVGVTISAEQQKLAQERCA------GLPV 215 (383)
T ss_pred HHHHHHhCCCC-CCEEEEeCCCccH----HHHHHHHHCC----------CEEEEEeCCHHHHHHHHHHhc------cCeE
Confidence 34555544333 4589999987774 5555665443 389999999888877766652 3344
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEE
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIA 326 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~ 326 (459)
+|. .. +...++ ..+ +.|+.+- .++|+.. ...+.+++.+ +-|+|.-.+++
T Consensus 216 ~~~--~~-D~~~l~------~~f-----D~Ivs~~--~~ehvg~----~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 216 EIR--LQ-DYRDLN------GQF-----DRIVSVG--MFEHVGP----KNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EEE--EC-chhhcC------CCC-----CEEEEeC--chhhCCh----HHHHHHHHHHHHHcCCCcEEEE
Confidence 443 11 111111 011 2333232 3577732 2456677766 56899865444
No 51
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=69.96 E-value=12 Score=33.30 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=31.6
Q ss_pred ceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHH
Q 048299 189 QSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGER 245 (459)
Q Consensus 189 ~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~r 245 (459)
+..+|||||-|.|. |=..|+..-. ...|.++|++|+.+....+..-++
T Consensus 25 ~~~~vvD~GsG~Gy----Ls~~La~~l~-----~~~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGY----LSRALAHLLC-----NSSPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhH----HHHHHHHHHH-----hcCCCCeEEEEECCcHHHHHHHHH
Confidence 48999999999984 3344444111 023789999999887665444444
No 52
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=69.88 E-value=7.6 Score=30.64 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=52.3
Q ss_pred EEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccc
Q 048299 194 LDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVA 273 (459)
Q Consensus 194 IDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~ 273 (459)
+|+|.|.|.....|.+. + -.++|+++.+.+.++.+.+++. ..+++ |. .. +.+.
T Consensus 1 LdiG~G~G~~~~~l~~~-----~---------~~~v~~~D~~~~~~~~~~~~~~----~~~~~--~~--~~-d~~~---- 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----G---------GASVTGIDISEEMLEQARKRLK----NEGVS--FR--QG-DAED---- 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----T---------TCEEEEEES-HHHHHHHHHHTT----TSTEE--EE--ES-BTTS----
T ss_pred CEecCcCCHHHHHHHhc-----c---------CCEEEEEeCCHHHHHHHHhccc----ccCch--he--ee-hHHh----
Confidence 57888877665555543 2 4689999999887776655443 33444 32 11 2222
Q ss_pred cccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEE
Q 048299 274 FYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTI 325 (459)
Q Consensus 274 ~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~ 325 (459)
+...++-.=+|-|...+||+ . ....+++.+ |-|+|.-..+
T Consensus 54 ------l~~~~~sfD~v~~~~~~~~~-~-----~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 ------LPFPDNSFDVVFSNSVLHHL-E-----DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp ------SSS-TT-EEEEEEESHGGGS-S-----HHHHHHHHHHHHEEEEEEEE
T ss_pred ------Cccccccccccccccceeec-c-----CHHHHHHHHHHHcCcCeEEe
Confidence 23334444456666667888 3 355566655 6788875543
No 53
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=69.44 E-value=26 Score=35.12 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=63.1
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEE
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQ 258 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFe 258 (459)
.|+|.+.=++ -=||+|+|.| |-.++..+|.+-| .++|||..+.+..+.+.++ ++..|++=.
T Consensus 53 ~~~~~~~l~~-G~~vLDiGcG----wG~~~~~~a~~~g----------~~v~gitlS~~Q~~~a~~~----~~~~gl~~~ 113 (273)
T PF02353_consen 53 LLCEKLGLKP-GDRVLDIGCG----WGGLAIYAAERYG----------CHVTGITLSEEQAEYARER----IREAGLEDR 113 (273)
T ss_dssp HHHTTTT--T-T-EEEEES-T----TSHHHHHHHHHH------------EEEEEES-HHHHHHHHHH----HHCSTSSST
T ss_pred HHHHHhCCCC-CCEEEEeCCC----ccHHHHHHHHHcC----------cEEEEEECCHHHHHHHHHH----HHhcCCCCc
Confidence 4455544344 5589999765 7789999998875 5899999887766665444 446677633
Q ss_pred EEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEEEe
Q 048299 259 FHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTIAE 327 (459)
Q Consensus 259 F~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~~E 327 (459)
...... +..+++ -.-|-++.| -.+.|+.. ...+.|++.|. -|+|.-..++.
T Consensus 114 v~v~~~-D~~~~~----------~~fD~IvSi---~~~Ehvg~----~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 114 VEVRLQ-DYRDLP----------GKFDRIVSI---EMFEHVGR----KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEEES--GGG-------------S-SEEEEE---SEGGGTCG----GGHHHHHHHHHHHSETTEEEEEE
T ss_pred eEEEEe-eccccC----------CCCCEEEEE---echhhcCh----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 332222 222222 122223333 23567743 25788999985 68999766654
No 54
>PRK06922 hypothetical protein; Provisional
Probab=68.80 E-value=45 Score=37.83 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=61.8
Q ss_pred EEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCC
Q 048299 191 IHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPT 270 (459)
Q Consensus 191 VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~ 270 (459)
-.|+|+|.|.|. +...|+.+. |..++|||+.+...++.+.+++. ..+.++++. ..+.. .+
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~I--~gDa~-dL 479 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNVI--KGDAI-NL 479 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEEE--EcchH-hC
Confidence 479999999983 445566532 46799999999888887766542 235555543 22211 11
Q ss_pred ccccccccccccCCCCeEEEehhhhhhhhccC---CC----ChhHHHHHHHH-HhcCCC-eEEEEec
Q 048299 271 SVAFYLPSALTILPDETLAVNCMLFLHKLLKD---HD----TRDLRLFLHKI-KALNPR-VVTIAER 328 (459)
Q Consensus 271 ~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~---~~----~~~~~~~L~~i-r~L~P~-iv~~~E~ 328 (459)
. .. ..++.+=+|-+.+.+|++... .+ ......+|+.+ +.|+|. .++++|.
T Consensus 480 p------~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 480 S------SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred c------cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1 11 223333333344457876421 00 12345666665 789998 4555554
No 55
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=67.93 E-value=77 Score=29.47 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHH
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRT 242 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~et 242 (459)
.|.+.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+.+.+.++.+
T Consensus 6 ~i~~~i~~~---~~iLDiGcG~G~----~~~~l~~~~~----------~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 6 SILNLIPPG---SRVLDLGCGDGE----LLALLRDEKQ----------VRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHhcCCC---CEEEEeCCCCCH----HHHHHHhccC----------CcEEEEeCCHHHHHHH
Confidence 445555433 379999999994 5666765432 2569999887666554
No 56
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=67.72 E-value=76 Score=32.27 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=67.5
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..|++-+.=++ --||+|+|. .|-.|+.-.|.+-+ .++|||+-+.+.+....+++ +..|++=
T Consensus 62 ~~~~~kl~L~~-G~~lLDiGC----GWG~l~~~aA~~y~----------v~V~GvTlS~~Q~~~~~~r~----~~~gl~~ 122 (283)
T COG2230 62 DLILEKLGLKP-GMTLLDIGC----GWGGLAIYAAEEYG----------VTVVGVTLSEEQLAYAEKRI----AARGLED 122 (283)
T ss_pred HHHHHhcCCCC-CCEEEEeCC----ChhHHHHHHHHHcC----------CEEEEeeCCHHHHHHHHHHH----HHcCCCc
Confidence 34444444444 669999974 57789999998765 79999998887777666554 3455552
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHh-cCCCe
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKA-LNPRV 322 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~-L~P~i 322 (459)
..+ |....+.++. ..+ | .|-++-.++|+..+ ..+.|++.+++ |+|+-
T Consensus 123 ~v~-v~l~d~rd~~------e~f----D---rIvSvgmfEhvg~~----~~~~ff~~~~~~L~~~G 170 (283)
T COG2230 123 NVE-VRLQDYRDFE------EPF----D---RIVSVGMFEHVGKE----NYDDFFKKVYALLKPGG 170 (283)
T ss_pred ccE-EEeccccccc------ccc----c---eeeehhhHHHhCcc----cHHHHHHHHHhhcCCCc
Confidence 222 2222444443 111 2 23344456888543 57899999975 67774
No 57
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=60.32 E-value=2.1e+02 Score=29.36 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=67.9
Q ss_pred HHHHHHHHhhccCCCcchhhHh-------------HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCC
Q 048299 154 ALQSCYLSLNQITPFIRFSHLT-------------ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNM 220 (459)
Q Consensus 154 ~~~~a~~~f~~~~P~~kfa~ft-------------aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~ 220 (459)
+...-+..+....||-+-.+-. --+.|++.+..-+ --+|+|+|.|.|. ++..++.+ +
T Consensus 75 ~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~-g~~VLDIGCG~G~----~~~~la~~-g---- 144 (322)
T PRK15068 75 QRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLK-GRTVLDVGCGNGY----HMWRMLGA-G---- 144 (322)
T ss_pred HHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCC-CCEEEEeccCCcH----HHHHHHHc-C----
Confidence 3344456666677775544332 1233444554222 3479999999984 23344443 2
Q ss_pred CCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhc
Q 048299 221 LQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLL 300 (459)
Q Consensus 221 ~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~ 300 (459)
+- +++||+++...+... +...+++.. +.+.+|... ..+++.. ...+ ++| -|+..|||+
T Consensus 145 ---~~--~V~GiD~S~~~l~q~-~a~~~~~~~-~~~i~~~~~---d~e~lp~----~~~F-----D~V--~s~~vl~H~- 202 (322)
T PRK15068 145 ---AK--LVVGIDPSQLFLCQF-EAVRKLLGN-DQRAHLLPL---GIEQLPA----LKAF-----DTV--FSMGVLYHR- 202 (322)
T ss_pred ---CC--EEEEEcCCHHHHHHH-HHHHHhcCC-CCCeEEEeC---CHHHCCC----cCCc-----CEE--EECChhhcc-
Confidence 22 499999886554321 111122211 223444422 2222220 0111 333 344457886
Q ss_pred cCCCChhHHHHHHHHHhcCCCeEEEEe
Q 048299 301 KDHDTRDLRLFLHKIKALNPRVVTIAE 327 (459)
Q Consensus 301 ~~~~~~~~~~~L~~ir~L~P~iv~~~E 327 (459)
.+ +.+.+-+.-+.|+|.-.++.|
T Consensus 203 ~d----p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 203 RS----PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CC----HHHHHHHHHHhcCCCcEEEEE
Confidence 33 454444445688999665554
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=57.67 E-value=1.7e+02 Score=27.68 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=33.7
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
..+|+|+|.|.|. +...++.+ + .++|+|+.+...++.+.+++. ..++..+|.
T Consensus 49 ~~~vLdiG~G~G~----~~~~l~~~-~----------~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~ 100 (233)
T PRK05134 49 GKRVLDVGCGGGI----LSESMARL-G----------ADVTGIDASEENIEVARLHAL----ESGLKIDYR 100 (233)
T ss_pred CCeEEEeCCCCCH----HHHHHHHc-C----------CeEEEEcCCHHHHHHHHHHHH----HcCCceEEE
Confidence 6689999998875 33344432 2 269999998877776665543 234445554
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=55.96 E-value=77 Score=30.29 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeE
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRF 257 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpF 257 (459)
..|++|++--+ .-.++|+|.|.|.= + --||.+ | +.+|+++.+...++. |.+.|+.-+++.
T Consensus 20 s~v~~a~~~~~-~g~~LDlgcG~GRN--a--lyLA~~-G----------~~VtAvD~s~~al~~----l~~~a~~~~l~i 79 (192)
T PF03848_consen 20 SEVLEAVPLLK-PGKALDLGCGEGRN--A--LYLASQ-G----------FDVTAVDISPVALEK----LQRLAEEEGLDI 79 (192)
T ss_dssp HHHHHHCTTS--SSEEEEES-TTSHH--H--HHHHHT-T-----------EEEEEESSHHHHHH----HHHHHHHTT-TE
T ss_pred HHHHHHHhhcC-CCcEEEcCCCCcHH--H--HHHHHC-C----------CeEEEEECCHHHHHH----HHHHHhhcCcee
Confidence 45777776665 67899999998842 1 124442 2 679999998877654 667788889997
Q ss_pred EEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEE
Q 048299 258 QFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTI 325 (459)
Q Consensus 258 eF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~ 325 (459)
+.... +++... + +++.=+|.+...+++|.++ .++.+++.++ .++|.-+.+
T Consensus 80 ~~~~~---Dl~~~~----------~-~~~yD~I~st~v~~fL~~~----~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 80 RTRVA---DLNDFD----------F-PEEYDFIVSTVVFMFLQRE----LRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp EEEE----BGCCBS------------TTTEEEEEEESSGGGS-GG----GHHHHHHHHHHTEEEEEEEE
T ss_pred EEEEe---cchhcc----------c-cCCcCEEEEEEEeccCCHH----HHHHHHHHHHhhcCCcEEEE
Confidence 76622 222222 1 1233345555556777443 6888888886 579985433
No 60
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=55.62 E-value=4 Score=33.47 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=26.9
Q ss_pred EEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 048299 194 LDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKF 249 (459)
Q Consensus 194 IDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~f 249 (459)
+|+|.|.|.==..|++.+ |..++|+++.++..++.+.+++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------------~~~~~~~~D~s~~~l~~a~~~~~~~ 43 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------------PDARYTGVDISPSMLERARERLAEL 43 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHC
T ss_pred CEeCccChHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHhhhc
Confidence 467777765444444433 5899999999887776666665543
No 61
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=54.28 E-value=1.6e+02 Score=28.02 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=61.3
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeecCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-FQFHPLLLMNDD 268 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-FeF~~v~~~~~e 268 (459)
.-.|+|++.|.|. --+.+|+. + . -+||+|+.+.+.++.+.+++.. +|+. .+|. ..+-.+
T Consensus 54 ~~~vLDl~~GsG~---l~l~~lsr--~-------a--~~V~~vE~~~~a~~~a~~Nl~~----~~~~~v~~~--~~D~~~ 113 (199)
T PRK10909 54 DARCLDCFAGSGA---LGLEALSR--Y-------A--AGATLLEMDRAVAQQLIKNLAT----LKAGNARVV--NTNALS 113 (199)
T ss_pred CCEEEEcCCCccH---HHHHHHHc--C-------C--CEEEEEECCHHHHHHHHHHHHH----hCCCcEEEE--EchHHH
Confidence 3468999999882 22345553 2 1 3799999888777766655444 3442 3332 211111
Q ss_pred CCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHh---cCCCeEEEEecCCCCC
Q 048299 269 PTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKA---LNPRVVTIAEREASHN 333 (459)
Q Consensus 269 ~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~---L~P~iv~~~E~ea~~n 333 (459)
.+. . . -.+=+.|++|=++. . .-.+.++..|.. ++|+-++++|.....+
T Consensus 114 ~l~------~-~-~~~fDlV~~DPPy~------~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 114 FLA------Q-P-GTPHNVVFVDPPFR------K---GLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred HHh------h-c-CCCceEEEECCCCC------C---ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 110 0 0 01126777776642 1 134567777776 6999999999876543
No 62
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=53.46 E-value=58 Score=32.94 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=54.3
Q ss_pred EEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEE-eecCCCCCCc
Q 048299 193 ILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHP-LLLMNDDPTS 271 (459)
Q Consensus 193 IIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~-v~~~~~e~~~ 271 (459)
|+|+|.|-|. |=+-||. - ---||||+...+.++.+.+. ...-=.++-+..|.. ......|..
T Consensus 93 ilDvGCGgGL----LSepLAr-l----------ga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~- 155 (282)
T KOG1270|consen 93 ILDVGCGGGL----LSEPLAR-L----------GAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL- 155 (282)
T ss_pred EEEeccCccc----cchhhHh-h----------CCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc-
Confidence 9999999885 3344443 2 14699999988888776665 222222233333331 011112221
Q ss_pred cccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCC
Q 048299 272 VAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPR 321 (459)
Q Consensus 272 ~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~ 321 (459)
.+..=||-|+--|+|. .| +.+-.-.+++.|+|.
T Consensus 156 ------------~~~fDaVvcsevleHV-~d----p~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 156 ------------TGKFDAVVCSEVLEHV-KD----PQEFLNCLSALLKPN 188 (282)
T ss_pred ------------ccccceeeeHHHHHHH-hC----HHHHHHHHHHHhCCC
Confidence 1234478888889999 44 344444456889997
No 63
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=52.69 E-value=1.2e+02 Score=31.44 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=30.3
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGER 245 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~r 245 (459)
..+|+|+|.|.|.- ...++.+-+ + .++|+++.+.+.++.+.++
T Consensus 114 ~~~VLDLGcGtG~~----~l~La~~~~------~---~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 114 NLKVVDVGGGTGFT----TLGIVKHVD------A---KNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred CCEEEEEecCCcHH----HHHHHHHCC------C---CEEEEEECCHHHHHHHHHh
Confidence 56899999999863 334444332 2 4899999988777776654
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=52.51 E-value=52 Score=27.34 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=31.5
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKF 249 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~f 249 (459)
+|+|+|.|.|.. ...++.+. |..++|+|+.+...++.+.+++..+
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~ 66 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---------PNGRVYAIERNPEALRLIERNARRF 66 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHh
Confidence 899999988753 44445433 2378999999887777776655443
No 65
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=49.46 E-value=81 Score=31.14 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEe
Q 048299 151 DRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRIT 230 (459)
Q Consensus 151 ~~~~~~~a~~~f~~~~P~~kfa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT 230 (459)
+..++..+.+.|.+..=|-.+... .+..|.+.+. .+ .-+|+|+|.|.|.-- ..|+..-. ......++
T Consensus 50 d~~~~~~ar~~fl~~g~y~~l~~~-i~~~l~~~l~-~~-~~~vLDiGcG~G~~~----~~l~~~~~------~~~~~~v~ 116 (272)
T PRK11088 50 DNKEMMQARRAFLDAGHYQPLRDA-VANLLAERLD-EK-ATALLDIGCGEGYYT----HALADALP------EITTMQLF 116 (272)
T ss_pred cCHHHHHHHHHHHHCCChHHHHHH-HHHHHHHhcC-CC-CCeEEEECCcCCHHH----HHHHHhcc------cccCCeEE
Confidence 456777777777654322211111 1122323322 23 467999999999633 33333221 11125799
Q ss_pred EecCCHHHHHHHHH
Q 048299 231 GTGNDIEILQRTGE 244 (459)
Q Consensus 231 ~i~~~~~~l~etg~ 244 (459)
||+.+...++.+.+
T Consensus 117 giD~s~~~l~~A~~ 130 (272)
T PRK11088 117 GLDISKVAIKYAAK 130 (272)
T ss_pred EECCCHHHHHHHHH
Confidence 99998877766544
No 66
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=49.32 E-value=2.3e+02 Score=26.53 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=53.7
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC-eEEEEEeecCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL-RFQFHPLLLMNDD 268 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv-pFeF~~v~~~~~e 268 (459)
...|+|+|.+.|. +...++. .+ + ++|+++.+...++...+++.. .++ .+.|... ..+
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~-~~-------~---~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~~---d~~ 103 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLAR-LG-------A---NVTGIDASEENIEVAKLHAKK----DPLLKIEYRCT---SVE 103 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHh-cC-------C---eEEEEeCCHHHHHHHHHHHHH----cCCCceEEEeC---CHH
Confidence 5689999998884 3334443 22 2 399999988777776665543 344 3444421 111
Q ss_pred CCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEE
Q 048299 269 PTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIA 326 (459)
Q Consensus 269 ~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~ 326 (459)
... . .. -.+-+.++.+. .+|+. .+ ...+|+.+ +.|+|.-++++
T Consensus 104 ~~~-----~-~~-~~~~D~i~~~~--~l~~~-~~-----~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 104 DLA-----E-KG-AKSFDVVTCME--VLEHV-PD-----PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred Hhh-----c-CC-CCCccEEEehh--HHHhC-CC-----HHHHHHHHHHhcCCCcEEEE
Confidence 111 0 00 01224444433 36766 22 34566665 56788855444
No 67
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=48.33 E-value=1.7e+02 Score=28.86 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=68.4
Q ss_pred hhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Q 048299 185 QVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLL 264 (459)
Q Consensus 185 ~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~ 264 (459)
-|...++-++..|+|.|.-.+-+ + -.|--+||.|++++..-+-+-. .+|+. .|.+|.-.+.
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy-------~-------~~p~~svt~lDpn~~mee~~~k---s~~E~--k~~~~~~fvv 132 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFY-------P-------WKPINSVTCLDPNEKMEEIADK---SAAEK--KPLQVERFVV 132 (252)
T ss_pred hcccCccceEEecccCCCCcccc-------c-------CCCCceEEEeCCcHHHHHHHHH---HHhhc--cCcceEEEEe
Confidence 33434889999999887433211 1 2377899999987533333222 23333 5555553333
Q ss_pred CCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCC-eEEEEecCCCCCCcchHHHHH
Q 048299 265 MNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPR-VVTIAEREASHNHPLFLQRFV 342 (459)
Q Consensus 265 ~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~-iv~~~E~ea~~n~~~F~~RF~ 342 (459)
...|++. ++.++-.=+|-|.|-|-.. .+ ++ ..|+.+| -|+|. ++++.|.-+.-. .|..|+.
T Consensus 133 a~ge~l~---------~l~d~s~DtVV~TlvLCSv-e~----~~-k~L~e~~rlLRpgG~iifiEHva~~y--~~~n~i~ 195 (252)
T KOG4300|consen 133 ADGENLP---------QLADGSYDTVVCTLVLCSV-ED----PV-KQLNEVRRLLRPGGRIIFIEHVAGEY--GFWNRIL 195 (252)
T ss_pred echhcCc---------ccccCCeeeEEEEEEEecc-CC----HH-HHHHHHHHhcCCCcEEEEEecccccc--hHHHHHH
Confidence 3445443 2334444455566555544 22 33 5677775 47998 566778776533 4666655
Q ss_pred H
Q 048299 343 E 343 (459)
Q Consensus 343 e 343 (459)
.
T Consensus 196 q 196 (252)
T KOG4300|consen 196 Q 196 (252)
T ss_pred H
Confidence 4
No 68
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=47.78 E-value=61 Score=32.23 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=47.7
Q ss_pred HhhccCCCcchhh-HhHHHHHHHHhhh----CCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCC
Q 048299 161 SLNQITPFIRFSH-LTANQAILESLQV----GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGND 235 (459)
Q Consensus 161 ~f~~~~P~~kfa~-ftaNqAILEA~~g----~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~ 235 (459)
.-+...|--++++ |..|+.|++.+-. .+ .-+|+|+|.|.| .+...|+.+ + + ++|||+.+
T Consensus 10 ~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~-~~~VLEiG~G~G----~lt~~L~~~-~-------~---~v~avE~d 73 (272)
T PRK00274 10 ERYGHRAKKSLGQNFLIDENILDKIVDAAGPQP-GDNVLEIGPGLG----ALTEPLLER-A-------A---KVTAVEID 73 (272)
T ss_pred HHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCC-cCeEEEeCCCcc----HHHHHHHHh-C-------C---cEEEEECC
Confidence 3345677777775 7777777764432 33 568999999988 455666654 3 2 89999998
Q ss_pred HHHHHHHHHHH
Q 048299 236 IEILQRTGERL 246 (459)
Q Consensus 236 ~~~l~etg~rL 246 (459)
.+.++.+.+++
T Consensus 74 ~~~~~~~~~~~ 84 (272)
T PRK00274 74 RDLAPILAETF 84 (272)
T ss_pred HHHHHHHHHhh
Confidence 87776665543
No 69
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=47.44 E-value=47 Score=31.72 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=36.6
Q ss_pred eEEEEEcccCCC---CCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHG---VQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFA 250 (459)
Q Consensus 190 ~VHIIDf~I~~G---~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA 250 (459)
.=|++|+|-+.| .+|. +. .|+.|+++|+.+.+.++.+.++..+|.
T Consensus 35 g~~l~DIGaGtGsi~iE~a--------~~--------~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWA--------LA--------GPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred CCEEEEeCCCccHHHHHHH--------Hh--------CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 449999999988 4554 22 378999999999999999999988775
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=47.26 E-value=2.4e+02 Score=27.22 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=26.0
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQR 241 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~e 241 (459)
.-.|+|.|.|.|. =+..||.+ | ..+|||+.+...++.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-G----------~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-G----------HEVLGVELSELAVEQ 74 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-C----------CeEEEEccCHHHHHH
Confidence 4578999998883 33445543 3 479999998877764
No 71
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=46.91 E-value=48 Score=34.59 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=84.8
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEE
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQ 258 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFe 258 (459)
.|++...|-+..--.||.|-|-| .++..+.. . .|+++ +|+.+...+-++...+. .||.+-
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~--------fp~ik--~infdlp~v~~~a~~~~-----~gV~~v 226 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-K--------YPHIK--GINFDLPFVLAAAPYLA-----PGVEHV 226 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-h--------CCCCc--eeecCHHHHHhhhhhhc-----CCccee
Confidence 45565556432335688886665 44555544 1 35544 44445444444433331 234443
Q ss_pred EEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCC-eEEEEecCCCCCCcc
Q 048299 259 FHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPR-VVTIAEREASHNHPL 336 (459)
Q Consensus 259 F~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~-iv~~~E~ea~~n~~~ 336 (459)
|. +-..+ +-+++++.+-|. |||+.++ ..-.||+.. ++|.|+ .++++|.-......
T Consensus 227 ~g----dmfq~------------~P~~daI~mkWi--LhdwtDe----dcvkiLknC~~sL~~~GkIiv~E~V~p~e~~- 283 (342)
T KOG3178|consen 227 AG----DMFQD------------TPKGDAIWMKWI--LHDWTDE----DCVKILKNCKKSLPPGGKIIVVENVTPEEDK- 283 (342)
T ss_pred cc----ccccc------------CCCcCeEEEEee--cccCChH----HHHHHHHHHHHhCCCCCEEEEEeccCCCCCC-
Confidence 33 11112 223567777676 8999543 566778776 578998 56677774443221
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhHhHHHHHhhc-CCCccccccchhHHHHHHHhCCCcccc
Q 048299 337 FLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATE-GENRKERHERFDSWEMILRSCGYSNVP 412 (459)
Q Consensus 337 F~~RF~eaL~~YsalFDsLea~l~~~~~eR~~iE~~~lg~eI~niVA~e-G~~R~eR~E~~~~W~~r~~~aGF~~~~ 412 (459)
||-+++..-++ . .+.-.+-|+ |-+| +..+|+..+..+||....
T Consensus 284 ---------------~dd~~s~v~~~--------~-----d~lm~~~~~~Gker-----t~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 284 ---------------FDDIDSSVTRD--------M-----DLLMLTQTSGGKER-----TLKEFQALLPEEGFPVCM 327 (342)
T ss_pred ---------------ccccccceeeh--------h-----HHHHHHHhccceec-----cHHHHHhcchhhcCceeE
Confidence 33333322111 1 111123355 5555 457999999999997653
No 72
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=46.75 E-value=2.8e+02 Score=27.36 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=57.9
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC-eEEEEEeecCCCCCC
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL-RFQFHPLLLMNDDPT 270 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv-pFeF~~v~~~~~e~~ 270 (459)
+|+|+|.|.|. +...+..++ +.-++|+|+.+.+.++...+.+......+.- .+++. ..+..+-+
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~--~~D~~~~l 139 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ--IDDGFKFL 139 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE--ECchHHHH
Confidence 88999998876 344444332 2457999999888888777766655432221 23332 22111111
Q ss_pred ccccccccccccCCCCeEEEehhhhhhhhccCCCChh--HHHHHHHH-HhcCCCeEEEEe
Q 048299 271 SVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRD--LRLFLHKI-KALNPRVVTIAE 327 (459)
Q Consensus 271 ~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~--~~~~L~~i-r~L~P~iv~~~E 327 (459)
. . . -.+=++|+++.....+ .... ...|++.+ +.|+|.-++++.
T Consensus 140 ~------~-~-~~~yDvIi~D~~~~~~------~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 140 A------D-T-ENTFDVIIVDSTDPVG------PAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred H------h-C-CCCccEEEEeCCCCCC------cccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 0 0 0 0112566666542111 1111 35677666 579999777765
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=45.46 E-value=2.4e+02 Score=25.68 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=34.9
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
.|+|+|.|.|. +...++.+ ++ ++|+|+.+.+.++.+.+++. ..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--------~~---~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--------GK---CILTTDINPFAVKELRENAK----LNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--------CC---EEEEEECCHHHHHHHHHHHH----HcCCceEEE
Confidence 49999999994 44455542 33 89999999988888877774 234444443
No 74
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=43.30 E-value=35 Score=24.38 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=24.3
Q ss_pred CeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEe
Q 048299 286 ETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAE 327 (459)
Q Consensus 286 EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E 327 (459)
|.+-|||...--++..- ...+.++..|+.++|+-++++-
T Consensus 1 e~i~v~a~v~~~~fSgH---ad~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGH---ADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp CEEE--SEEEESGCSSS----BHHHHHHHHHHHCSSEEEEES
T ss_pred CEEEeEEEEEEEeecCC---CCHHHHHHHHHhcCCCEEEEec
Confidence 34567765332224322 3588999999999999888873
No 75
>PRK04148 hypothetical protein; Provisional
Probab=42.62 E-value=92 Score=28.12 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHH--------------------
Q 048299 180 ILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEIL-------------------- 239 (459)
Q Consensus 180 ILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l-------------------- 239 (459)
|.+.....+ .-.|+|.|+|+|+.= -..|+. .| ..+|+|+.+...+
T Consensus 8 l~~~~~~~~-~~kileIG~GfG~~v---A~~L~~-~G----------~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~ 72 (134)
T PRK04148 8 IAENYEKGK-NKKIVELGIGFYFKV---AKKLKE-SG----------FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNL 72 (134)
T ss_pred HHHhccccc-CCEEEEEEecCCHHH---HHHHHH-CC----------CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCH
Confidence 445554444 567999999987533 344543 22 3778877442211
Q ss_pred ---------------HHHHHHHHHHHHHcCCeEEEEEeec
Q 048299 240 ---------------QRTGERLLKFAQSLGLRFQFHPLLL 264 (459)
Q Consensus 240 ---------------~etg~rL~~fA~~lgvpFeF~~v~~ 264 (459)
.|...-+.+.|++.|.++-+.++..
T Consensus 73 ~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 73 EIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4777778888888888888877654
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=41.66 E-value=64 Score=30.52 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=36.9
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
.++++++-.. .-+|+|+|.|.|..=..|.+.+ + + .-++++|+.+.+.++.+.+++.+
T Consensus 63 ~~~~~l~~~~-~~~VLDiG~GsG~~~~~la~~~----~-------~-~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 63 MMCELIEPRP-GMKILEVGTGSGYQAAVCAEAI----E-------R-RGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred HHHHhcCCCC-CCEEEEECcCccHHHHHHHHhc----C-------C-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3556655444 4579999998887433333322 1 1 22799999998888877777643
No 77
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=41.42 E-value=63 Score=32.47 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=35.1
Q ss_pred CCCeEEEeEecCC----HHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 223 PPPMLRITGTGND----IEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 223 gpp~LRIT~i~~~----~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
|+|.-|||..+++ .+.|+++.+.+.+-++.+|....|+
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~ 260 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFI 260 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 8999999999987 4579999999999999999999998
No 78
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=41.24 E-value=2.8e+02 Score=29.62 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=58.8
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC-eEEEEEeecCCCC
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL-RFQFHPLLLMNDD 268 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv-pFeF~~v~~~~~e 268 (459)
.-+|+|+|.|.|. +--.||.+. -+++||+.+.+.++.+.+++. ..|+ ..+|. ..+-.+
T Consensus 298 ~~~VLDlgcGtG~----~sl~la~~~-----------~~V~gvD~s~~al~~A~~n~~----~~~~~~v~~~--~~d~~~ 356 (443)
T PRK13168 298 GDRVLDLFCGLGN----FTLPLARQA-----------AEVVGVEGVEAMVERARENAR----RNGLDNVTFY--HANLEE 356 (443)
T ss_pred CCEEEEEeccCCH----HHHHHHHhC-----------CEEEEEeCCHHHHHHHHHHHH----HcCCCceEEE--EeChHH
Confidence 4689999999985 333455432 279999999988888776553 3344 24444 221111
Q ss_pred CCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEecC
Q 048299 269 PTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAERE 329 (459)
Q Consensus 269 ~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E~e 329 (459)
.+. ...+.-..=++|++|=.. ...+.++..+.+++|+-++.+.-+
T Consensus 357 ~l~-----~~~~~~~~fD~Vi~dPPr-----------~g~~~~~~~l~~~~~~~ivyvSCn 401 (443)
T PRK13168 357 DFT-----DQPWALGGFDKVLLDPPR-----------AGAAEVMQALAKLGPKRIVYVSCN 401 (443)
T ss_pred hhh-----hhhhhcCCCCEEEECcCC-----------cChHHHHHHHHhcCCCeEEEEEeC
Confidence 111 000100112555554432 124467788888999988777543
No 79
>PRK00811 spermidine synthase; Provisional
Probab=40.32 E-value=3.3e+02 Score=27.22 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=58.7
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHc--CCeEEEEEeecCCCCC
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSL--GLRFQFHPLLLMNDDP 269 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~l--gvpFeF~~v~~~~~e~ 269 (459)
+|+|+|.|.|. +...+.+++ +.-+||+|+.+...++...+.+.++.... +-.+++. ..+-.+-
T Consensus 79 ~VL~iG~G~G~----~~~~~l~~~---------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~ 143 (283)
T PRK00811 79 RVLIIGGGDGG----TLREVLKHP---------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKF 143 (283)
T ss_pred EEEEEecCchH----HHHHHHcCC---------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHH
Confidence 67888888774 344444433 24589999999988888877776655432 2223332 2221111
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChh--HHHHHHHH-HhcCCCeEEEEecC
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRD--LRLFLHKI-KALNPRVVTIAERE 329 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~--~~~~L~~i-r~L~P~iv~~~E~e 329 (459)
+. . .-..=+++++++.- +.- .+.. ...|++.+ +.|+|.-++++-.+
T Consensus 144 l~------~--~~~~yDvIi~D~~d--p~~----~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 144 VA------E--TENSFDVIIVDSTD--PVG----PAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred Hh------h--CCCcccEEEECCCC--CCC----chhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 10 0 00111677776531 110 0111 25677665 57999987776433
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=39.90 E-value=79 Score=28.89 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC
Q 048299 176 ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL 255 (459)
Q Consensus 176 aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv 255 (459)
+-..+++.+...+ .=+|+|+|.|.|.- =-.|+.+ -|..++|+++.+...++-+.+++ +..++
T Consensus 19 ~t~lL~~~l~~~~-~~~vLDlG~G~G~i----~~~la~~---------~~~~~v~~vDi~~~a~~~a~~n~----~~n~~ 80 (170)
T PF05175_consen 19 GTRLLLDNLPKHK-GGRVLDLGCGSGVI----SLALAKR---------GPDAKVTAVDINPDALELAKRNA----ERNGL 80 (170)
T ss_dssp HHHHHHHHHHHHT-TCEEEEETSTTSHH----HHHHHHT---------STCEEEEEEESBHHHHHHHHHHH----HHTTC
T ss_pred HHHHHHHHHhhcc-CCeEEEecCChHHH----HHHHHHh---------CCCCEEEEEcCCHHHHHHHHHHH----HhcCc
Confidence 4456777777655 67799999999842 2233332 25788999999988887766654 44455
Q ss_pred e-EEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEE
Q 048299 256 R-FQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVT 324 (459)
Q Consensus 256 p-FeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~ 324 (459)
. .++. ..+..+.+. -.+=+.++.|=+ +|.-..+ +....+.|++.. +-|+|.-..
T Consensus 81 ~~v~~~--~~d~~~~~~----------~~~fD~Iv~NPP--~~~~~~~-~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 81 ENVEVV--QSDLFEALP----------DGKFDLIVSNPP--FHAGGDD-GLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp TTEEEE--ESSTTTTCC----------TTCEEEEEE-----SBTTSHC-HHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccccc--ccccccccc----------ccceeEEEEccc--hhccccc-chhhHHHHHHHHHHhccCCCEE
Confidence 5 4433 333333221 011157777766 3322111 112345555554 578998644
No 81
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=39.06 E-value=73 Score=28.95 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=37.1
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+.|++.+.-.. .=+|+|+|.|.|. |...|+.+ + . ++|+|+.+...++.+.+++.
T Consensus 3 ~~i~~~~~~~~-~~~vLEiG~G~G~----lt~~l~~~-~------~----~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 3 DKIVRAANLRP-GDTVLEIGPGKGA----LTEELLER-A------A----RVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHhcCCCC-cCEEEEECCCccH----HHHHHHhc-C------C----eEEEEECCHHHHHHHHHHhc
Confidence 34666655443 4489999999885 55566655 3 2 79999999877777666553
No 82
>PRK07402 precorrin-6B methylase; Provisional
Probab=38.55 E-value=1.4e+02 Score=27.82 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=42.4
Q ss_pred hhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 048299 171 FSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKF 249 (459)
Q Consensus 171 fa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~f 249 (459)
+..--....+++.+.-.. .=.|+|+|.|.|. +. ..++... |.-+||+|+.+.+.++.+.+++.++
T Consensus 23 ~t~~~v~~~l~~~l~~~~-~~~VLDiG~G~G~-~~---~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~ 87 (196)
T PRK07402 23 LTKREVRLLLISQLRLEP-DSVLWDIGAGTGT-IP---VEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRF 87 (196)
T ss_pred CCHHHHHHHHHHhcCCCC-CCEEEEeCCCCCH-HH---HHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 444555666777775443 4579999999996 22 2233222 2358999999988888877766543
No 83
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=37.73 E-value=61 Score=32.89 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=37.8
Q ss_pred hHhHHHHHHHHhh----hCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 173 HLTANQAILESLQ----VGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 173 ~ftaNqAILEA~~----g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
||..|..|++.+- -.+ .=.|+|+|.|.|. |-..|+.+.. ++++|+.+.+.++...+++..
T Consensus 17 nFL~d~~i~~~Iv~~~~~~~-~~~VLEIG~G~G~----LT~~Ll~~~~-----------~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAAIKP-TDTVLEIGPGTGN----LTEKLLQLAK-----------KVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred cccCCHHHHHHHHHhcCCCC-cCEEEEecCchHH----HHHHHHHhCC-----------cEEEEECCHHHHHHHHHHHHh
Confidence 4445555554433 233 3469999998886 4455554321 699999998877777666644
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=37.11 E-value=1.1e+02 Score=28.15 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=31.2
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
.-.|+|+|.|.|. +--.++.+ . |..+||+|+.+...++.+.++...
T Consensus 32 ~~~vLDiG~G~G~----~~~~la~~-~--------~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 32 AKHLIDVGAGTGS----VSIEAALQ-F--------PSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCEEEEECCcCCH----HHHHHHHH-C--------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3469999998883 33334433 2 357899999998887776655543
No 85
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=36.65 E-value=1.2e+02 Score=28.68 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=54.8
Q ss_pred EEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeecCCCCC
Q 048299 191 IHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-FQFHPLLLMNDDP 269 (459)
Q Consensus 191 VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-FeF~~v~~~~~e~ 269 (459)
-.|+|+|.|.|. .++ .++.+. |..++|+|+.+.+.++.+.+++ +..|++ ++|.. . +.++
T Consensus 47 ~~VLDiGcGtG~--~al--~la~~~---------~~~~V~giD~s~~~l~~A~~~~----~~~~l~~i~~~~--~-d~~~ 106 (187)
T PRK00107 47 ERVLDVGSGAGF--PGI--PLAIAR---------PELKVTLVDSLGKKIAFLREVA----AELGLKNVTVVH--G-RAEE 106 (187)
T ss_pred CeEEEEcCCCCH--HHH--HHHHHC---------CCCeEEEEeCcHHHHHHHHHHH----HHcCCCCEEEEe--c-cHhh
Confidence 368999998883 222 223222 2458999999888887776544 345653 55542 2 1222
Q ss_pred CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEEe
Q 048299 270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIAE 327 (459)
Q Consensus 270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~E 327 (459)
.. . -.+=+.++.|+. . ..+.+++.+ +.|+|.-.+++.
T Consensus 107 ~~--------~-~~~fDlV~~~~~-------~-----~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 107 FG--------Q-EEKFDVVTSRAV-------A-----SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC--------C-CCCccEEEEccc-------c-----CHHHHHHHHHHhcCCCeEEEEE
Confidence 21 1 112356665542 1 245677765 789999766655
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=35.03 E-value=1.5e+02 Score=29.64 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=35.8
Q ss_pred EEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe--EEEE
Q 048299 191 IHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR--FQFH 260 (459)
Q Consensus 191 VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp--FeF~ 260 (459)
.+|+|+|.|.|. +.-.|+... |..++|+++.+.+.++.+.+++ +..++. ++|.
T Consensus 116 ~~vLDlG~GsG~----i~l~la~~~---------~~~~v~avDis~~al~~a~~n~----~~~~~~~~v~~~ 170 (284)
T TIGR00536 116 LHILDLGTGSGC----IALALAYEF---------PNAEVIAVDISPDALAVAEENA----EKNQLEHRVEFI 170 (284)
T ss_pred CEEEEEeccHhH----HHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHH----HHcCCCCcEEEE
Confidence 689999999984 333444432 2468999999988888777664 344554 4444
No 87
>PHA03411 putative methyltransferase; Provisional
Probab=34.79 E-value=88 Score=31.76 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=51.9
Q ss_pred HHHHHHhhccCCCcchhhHhHHHHHHHHhh--hCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEec
Q 048299 156 QSCYLSLNQITPFIRFSHLTANQAILESLQ--VGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTG 233 (459)
Q Consensus 156 ~~a~~~f~~~~P~~kfa~ftaNqAILEA~~--g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~ 233 (459)
.-.|..|..-+ +...+.|++...|+..+- ... .-+|+|+|.|.|. +...++.+.. ..+||+|+
T Consensus 31 ~~v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~-~grVLDLGcGsGi----lsl~la~r~~---------~~~V~gVD 95 (279)
T PHA03411 31 EFCYNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHC-TGKVLDLCAGIGR----LSFCMLHRCK---------PEKIVCVE 95 (279)
T ss_pred HHHHHhccccc-ccCceeEcCCHHHHHHHHhcccc-CCeEEEcCCCCCH----HHHHHHHhCC---------CCEEEEEE
Confidence 33577777777 777899999999996542 222 4579999999983 3344544432 26899999
Q ss_pred CCHHHHHHHHHH
Q 048299 234 NDIEILQRTGER 245 (459)
Q Consensus 234 ~~~~~l~etg~r 245 (459)
.+...++.+.++
T Consensus 96 isp~al~~Ar~n 107 (279)
T PHA03411 96 LNPEFARIGKRL 107 (279)
T ss_pred CCHHHHHHHHHh
Confidence 988777665443
No 88
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=34.72 E-value=73 Score=29.73 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=32.3
Q ss_pred EEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-EEEE
Q 048299 191 IHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-FQFH 260 (459)
Q Consensus 191 VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-FeF~ 260 (459)
-+|+|+|.|.|. .++ .|+... |..++|+|+.+...++.+.+++ +..|++ ++|.
T Consensus 44 ~~vLDiGcGtG~--~s~--~la~~~---------~~~~V~~iD~s~~~~~~a~~~~----~~~~~~~i~~i 97 (181)
T TIGR00138 44 KKVIDIGSGAGF--PGI--PLAIAR---------PELKLTLLESNHKKVAFLREVK----AELGLNNVEIV 97 (181)
T ss_pred CeEEEecCCCCc--cHH--HHHHHC---------CCCeEEEEeCcHHHHHHHHHHH----HHhCCCCeEEE
Confidence 479999999983 222 122211 3467999999887776655443 445653 4443
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=33.73 E-value=1.1e+02 Score=27.60 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=31.7
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
.-.|+|+|.|.|. +...|+.+ + .+||+++.+.+.++.+.+++.
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-~----------~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-G----------KKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-c----------ceEEEEECCHHHHHHHHHHHH
Confidence 4469999999998 45555554 3 379999998888877766653
No 90
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=33.24 E-value=93 Score=31.82 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=40.3
Q ss_pred HHHHHhhhCC--ceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 179 AILESLQVGQ--QSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 179 AILEA~~g~~--~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+++|++.... +.-||.|+|.|.|.-=-+++..| |.-|+|+|+.+...+.-++++-.
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------------~~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------------PQCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------------CCceEEEEeccHHHHHHHHHHHH
Confidence 4556655443 25589999999997666665544 47799999999888887776633
No 91
>PLN02366 spermidine synthase
Probab=32.50 E-value=4e+02 Score=27.21 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=33.1
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKF 249 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~f 249 (459)
+|+|+|.|.|. +...+++. |+.-+||.|+-+.+.++.+.+.+.+.
T Consensus 94 rVLiIGgG~G~----~~rellk~---------~~v~~V~~VEiD~~Vi~~ar~~f~~~ 138 (308)
T PLN02366 94 KVLVVGGGDGG----VLREIARH---------SSVEQIDICEIDKMVIDVSKKFFPDL 138 (308)
T ss_pred eEEEEcCCccH----HHHHHHhC---------CCCCeEEEEECCHHHHHHHHHhhhhh
Confidence 56888888775 56666653 34689999999988888777776554
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=32.43 E-value=1.2e+02 Score=29.70 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=39.5
Q ss_pred hhHhHHHHHHHHhhhCC-ceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 172 SHLTANQAILESLQVGQ-QSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 172 a~ftaNqAILEA~~g~~-~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+|..+.+..++++.... ..-.|+|+|.|.|. |.-.++. . |+. +|+||+.+...++.+.+++.
T Consensus 101 g~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~-~-------g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 101 GTHPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAK-L-------GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHH-c-------CCC--eEEEEECCHHHHHHHHHHHH
Confidence 34444555677765321 24579999999984 3333333 2 333 59999999988888877653
No 93
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=32.28 E-value=1.8e+02 Score=27.63 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=44.4
Q ss_pred CCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 202 VQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 202 ~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
..||-++..+..+.. .-+.-.|+-++.+.+.|+.++.-..++++..|.+++|.
T Consensus 10 ~~~~~~l~~~l~~~~------~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~ 62 (183)
T PF02056_consen 10 TYFPLLLLGDLLRTE------ELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVE 62 (183)
T ss_dssp CCHHHHHHHHHHCTT------TSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEE
T ss_pred HhhHHHHHHHHhcCc------cCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 689988887777765 56666788888899999999999999999999999987
No 94
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=32.00 E-value=2.3e+02 Score=30.26 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=40.2
Q ss_pred HHHHHHHhhcccCCCCCCCCCeEEEeEecCC-HHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 205 PPLMQALVERFKNSNMLQPPPMLRITGTGND-IEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 205 p~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~-~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
|.||+.|+.+.. .-+--.|+-++.+ .+.|+.++....++++..|.+++|.
T Consensus 14 p~li~~l~~~~~------~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 14 PELIEGLIRRYE------ELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVH 64 (419)
T ss_pred HHHHHHHHhccc------cCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 588999999754 4444556666666 8999999999999999999998887
No 95
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=31.59 E-value=1.4e+02 Score=30.77 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=33.8
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
.+.|+|+|.|.|.=-+. |+.+. +..++||++-+...++.+.+.+..
T Consensus 115 ~~~vLDIGtGag~I~~l----La~~~---------~~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 115 NVRVLDIGVGANCIYPL----IGVHE---------YGWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CceEEEecCCccHHHHH----HHhhC---------CCCEEEEEeCCHHHHHHHHHHHHh
Confidence 79999999998844444 34433 246899999998888888776653
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=31.28 E-value=1.2e+02 Score=28.68 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 179 AILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 179 AILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
.+++++.-.+ .-+|+|+|.|.|..= ..|+.+.+ +.-++++|+.+.+.++.+.+++.+
T Consensus 68 ~~~~~l~~~~-~~~VLDiG~GsG~~a----~~la~~~~--------~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 68 MMTELLELKP-GMKVLEIGTGSGYQA----AVLAEIVG--------RDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHhCCCC-cCEEEEECCCccHHH----HHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4566665444 568999998887632 23444432 345899999988888777766654
No 97
>PRK02399 hypothetical protein; Provisional
Probab=30.38 E-value=4.3e+02 Score=28.34 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=62.1
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhH
Q 048299 229 ITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDL 308 (459)
Q Consensus 229 IT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~ 308 (459)
+|-+..+.++.+++|+.+++--+...=|..|- +-..-+.. +. .+|+.. | ++...
T Consensus 308 vTlmRTt~eE~~~~g~~ia~kLn~a~gpv~vl-lP~~G~S~----------~D-~~G~~f--------~------Dpead 361 (406)
T PRK02399 308 VTLMRTTPEENRQIGRWIAEKLNRAKGPVAFL-IPLGGVSA----------LD-RPGQPF--------H------DPEAD 361 (406)
T ss_pred ceeeecCHHHHHHHHHHHHHHHhcCCCCeEEE-EeCCCCcc----------cc-CCCCCc--------c------ChhHH
Confidence 55566678888888988887776666677765 32222222 21 345552 2 23456
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCCCCcchHHHHHHHHH
Q 048299 309 RLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVD 346 (459)
Q Consensus 309 ~~~L~~ir~L~P~iv~~~E~ea~~n~~~F~~RF~eaL~ 346 (459)
..|+..+++-=+.-+.+.|.+.+-|+|.|.....+.|.
T Consensus 362 ~alf~~l~~~l~~~~~v~~~~~hIND~~FA~a~~~~l~ 399 (406)
T PRK02399 362 AAFFDALEETVTETRRLIEVPAHINDPEFAEAAVEAFE 399 (406)
T ss_pred HHHHHHHHHhCCCCceEEECCCCCCCHHHHHHHHHHHH
Confidence 78888887544555889999999999999998888773
No 98
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=2.7e+02 Score=28.23 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=95.4
Q ss_pred hHHHHHHHHhhhCC----ceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHH
Q 048299 175 TANQAILESLQVGQ----QSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFA 250 (459)
Q Consensus 175 taNqAILEA~~g~~----~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA 250 (459)
-+-.+||.+..++= .--..||+|-|...-=.-|+.+|+.|.- -+|.-.|+.+.+.|+.|.+.|..-
T Consensus 60 RtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~---------~~ryvpiDv~a~iL~~ta~ai~~~- 129 (321)
T COG4301 60 RTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGS---------LLRYVPIDVSASILRATATAILRE- 129 (321)
T ss_pred hhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCC---------cceeeeecccHHHHHHHHHHHHHh-
Confidence 45567777766542 1347899999998888999999998775 689999999999999887765432
Q ss_pred HHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHH-hcCCCeEEEEec-
Q 048299 251 QSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIK-ALNPRVVTIAER- 328 (459)
Q Consensus 251 ~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir-~L~P~iv~~~E~- 328 (459)
- -.++.+++..+-...+. .+. +-|--|.|-.--.|-++.+ .+...||..++ .|+|.=-++.-.
T Consensus 130 -y--~~l~v~~l~~~~~~~La-------~~~-~~~~Rl~~flGStlGN~tp----~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 130 -Y--PGLEVNALCGDYELALA-------ELP-RGGRRLFVFLGSTLGNLTP----GECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred -C--CCCeEeehhhhHHHHHh-------ccc-CCCeEEEEEecccccCCCh----HHHHHHHHHHHhcCCCcceEEEecc
Confidence 1 23455555442211111 111 3345666655555666633 47899999998 689985444322
Q ss_pred --------CCCCCCc-chHHHH-HHHHHHHHHHHH
Q 048299 329 --------EASHNHP-LFLQRF-VEAVDHYGAIFD 353 (459)
Q Consensus 329 --------ea~~n~~-~F~~RF-~eaL~~YsalFD 353 (459)
++.++.| .-..-| .+-|.|...+|+
T Consensus 195 l~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f~ 229 (321)
T COG4301 195 LRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVFG 229 (321)
T ss_pred ccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHhc
Confidence 2234554 223333 344555555553
No 99
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=30.00 E-value=1.4e+02 Score=28.61 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=49.2
Q ss_pred hhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Q 048299 184 LQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLL 263 (459)
Q Consensus 184 ~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~ 263 (459)
+...+ .|-+||=.|+-|-=-..+|++|-..- + .=|++.+.--.-.-.+-..+..+.++.+|+|.+|-.++
T Consensus 118 l~~~~-~lVLVDDEiSTG~T~lnli~al~~~~-------p--~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 118 LRNAR-TLVLVDDEISTGNTFLNLIRALHAKY-------P--RKRYVVASLLDWRSEEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred hcCCC-CEEEEecCccchHHHHHHHHHHHHhC-------C--CceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEEEEee
Confidence 33465 99999999999999999999996643 2 44444443111111233556778899999999998765
Q ss_pred c
Q 048299 264 L 264 (459)
Q Consensus 264 ~ 264 (459)
.
T Consensus 188 ~ 188 (191)
T PF15609_consen 188 S 188 (191)
T ss_pred c
Confidence 3
No 100
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=29.87 E-value=3.7e+02 Score=28.03 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=65.0
Q ss_pred hhhHhHHHHHHHHhhhCCceEE----EEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCC----------H
Q 048299 171 FSHLTANQAILESLQVGQQSIH----ILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGND----------I 236 (459)
Q Consensus 171 fa~ftaNqAILEA~~g~~~~VH----IIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~----------~ 236 (459)
..-...-..|=|+.+.-. ++| -||+|=.+-.||+-+++.|-.--. .=..-|-++|-||+.+ +
T Consensus 99 ~sel~~arqlse~A~~~G-k~h~VlLmVd~~DlreG~~~~~~~~l~~~V~---eI~~lkGi~~vGlgTnF~Cfg~v~PTp 174 (353)
T COG3457 99 VSELDTARQLSEAAVRMG-KVHDVLLMVDYGDLREGQWGFLIEDLEETVE---EIQQLKGIHLVGLGTNFPCFGDVLPTP 174 (353)
T ss_pred EecHHHHHHHHHHHHHhC-cceeEEEEEEcccccCcchhhHHHHHHHHHH---HHhcCCCceEEeeecccccccCcCCCc
Confidence 333445556666666554 444 588888888999855555432211 0013567899999632 4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCc--cccccccccccCCCCeEEEe
Q 048299 237 EILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTS--VAFYLPSALTILPDETLAVN 291 (459)
Q Consensus 237 ~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~--~~~~l~~~l~~~~~EaLaVN 291 (459)
+.++..-+--.+..++.|++++-- ...+..... +...++.--++++||++.--
T Consensus 175 ~n~~~ll~~~~~lE~~~Gi~l~~v--sagnats~~~L~~~~~~~inhlriG~al~~g 229 (353)
T COG3457 175 ENLESLLQGKKKLEASSGIQLKQV--SAGNATSLTLLPMGSLPGINHLRIGEALTGG 229 (353)
T ss_pred ccHHHHHHHHHHHHHhcCceeEEe--cCCCccchhhhhcccccccccccccceeecc
Confidence 566655555556667779888743 222211111 11122344578889998644
No 101
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=29.55 E-value=1.3e+02 Score=28.60 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=36.0
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-EEE
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-FQF 259 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-FeF 259 (459)
..+|+|+|.|.| .+.-.++.+. |..++|||+.+...++.+.+++. ..|++ .+|
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~----~~~~~~~~~ 141 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER---------PDARVTAVDISPEALAVARKNAA----RLGLDNVTF 141 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHH----HcCCCeEEE
Confidence 568999999998 4445555432 34689999998877777665543 44554 443
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=29.25 E-value=1.2e+02 Score=28.77 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=36.7
Q ss_pred HHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 180 ILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 180 ILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
+++++.-.+ .=+|+|+|.|.|..= -.|+...+ +.-++|+|+.+.+.++.+.+++.+
T Consensus 68 ~~~~l~~~~-g~~VLdIG~GsG~~t----~~la~~~~--------~~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 68 MCELLDLKE-GMKVLEIGTGSGYHA----AVVAEIVG--------KSGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred HHHHcCCCC-cCEEEEECCcccHHH----HHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 444544333 457999999888732 22333222 345899999998888888777764
No 103
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=29.20 E-value=4.7e+02 Score=28.03 Aligned_cols=94 Identities=20% Similarity=0.172 Sum_probs=63.1
Q ss_pred EEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChh
Q 048299 228 RITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRD 307 (459)
Q Consensus 228 RIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~ 307 (459)
-+|-+..+.++.++.|+.+++--+...=|..|- +-.. .++ ++. .+|+.. .| +..
T Consensus 306 ~vTlmRtt~eE~~~~g~~ia~kLn~~~gpv~v~-lP~~---G~S-------~~d-~~G~~f------------~D--pea 359 (403)
T PF06792_consen 306 QVTLMRTTPEENRQLGEFIAEKLNRAKGPVRVL-LPLG---GVS-------ALD-RPGGPF------------YD--PEA 359 (403)
T ss_pred ceeEeeCCHHHHHHHHHHHHHHHhcCCCCEEEE-ECCC---CCc-------ccC-CCCCcC------------cC--hhH
Confidence 356666678888888888877666655566654 2221 221 222 345542 22 345
Q ss_pred HHHHHHHHHh-cCCCeEEEEecCCCCCCcchHHHHHHHHHH
Q 048299 308 LRLFLHKIKA-LNPRVVTIAEREASHNHPLFLQRFVEAVDH 347 (459)
Q Consensus 308 ~~~~L~~ir~-L~P~iv~~~E~ea~~n~~~F~~RF~eaL~~ 347 (459)
...|+..|++ |++.-+-+.|.+.+-|+|.|..-..++|.-
T Consensus 360 d~al~~~l~~~l~~~~i~v~~~~~hIND~~FA~~~~~~l~~ 400 (403)
T PF06792_consen 360 DEALFDALRENLDGSGIEVIEVDAHINDPEFADAAAEALLE 400 (403)
T ss_pred HHHHHHHHHHhCCCCCcEEEECCCCCCCHHHHHHHHHHHHH
Confidence 6788888874 666588899999999999999988887753
No 104
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=29.10 E-value=82 Score=32.18 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
+.+++++.-.+ .-.+||...|.|..=-.+++. .||..++.||+.+++.++.+.++|.+
T Consensus 9 ~Evl~~L~~~p-g~~vlD~TlG~GGhS~~il~~------------~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKP-DGIYVDGTFGGGGHSRAILER------------LGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCC-CCEEEEeCcCChHHHHHHHHh------------CCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 35666665444 447999999999866555543 34567999999999999999988865
No 105
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=29.08 E-value=1.9e+02 Score=27.51 Aligned_cols=111 Identities=9% Similarity=0.061 Sum_probs=68.6
Q ss_pred eEEEEEcccC---CCCCcHHHHHHHhhcccCCCCCCCCCeEEE------eEecCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 190 SIHILDFDIM---HGVQWPPLMQALVERFKNSNMLQPPPMLRI------TGTGNDIEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 190 ~VHIIDf~I~---~G~QWp~LiqaLa~R~~~~~~~~gpp~LRI------T~i~~~~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
+|+||.|=-+ -+-.=-++|.+|+.+. +.+ |+|+. .+....++.-+..|+++.++.|-|.
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~~-----------~~~~~y~~t~~IN~-dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAAK-----------FPPVKYQTTTIINA-DDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHcC-----------CCcccccceEEEEC-ccchhhHHHHHHHHHHHhcccCCcc
Confidence 7999998533 3456678999995432 455 67763 3346778889999999999888877
Q ss_pred EeecCCCCCCccccccccccccCCC-Ce-EEEehhhhhhhhccCC-CChhHHHHHHHHHhc
Q 048299 261 PLLLMNDDPTSVAFYLPSALTILPD-ET-LAVNCMLFLHKLLKDH-DTRDLRLFLHKIKAL 318 (459)
Q Consensus 261 ~v~~~~~e~~~~~~~l~~~l~~~~~-Ea-LaVN~~~~Lh~l~~~~-~~~~~~~~L~~ir~L 318 (459)
+++.+.-..+. ...++..- ++ ++||-.-.+....... +....+.++..|+++
T Consensus 128 ~vllD~~g~v~------~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 128 QVVLDDKGAVK------NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred eEEECCcchHH------HhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 77765422221 23444332 56 6787765544332210 113456677777654
No 106
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=28.80 E-value=1.4e+02 Score=27.94 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=31.9
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
.-.|+|+|.|.| .+--.++.+.+ +.-+|++|+.+.+.++.+.+++..
T Consensus 41 ~~~vlDlG~GtG----~~s~~~a~~~~--------~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 41 GDMILDIGCGTG----SVTVEASLLVG--------ETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred cCEEEEeCCcCC----HHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 458999999987 33233333322 345899999998888877766544
No 107
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=27.94 E-value=1.3e+02 Score=29.39 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERL 246 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL 246 (459)
+.|++++...+ .=.|+|+|.|.|. |...|+.+.. ++++|+.+.+.++...+++
T Consensus 19 ~~i~~~~~~~~-~~~VLEiG~G~G~----lt~~L~~~~~-----------~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 19 QKIVEAANVLE-GDVVLEIGPGLGA----LTEPLLKRAK-----------KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred HHHHHhcCCCC-cCEEEEeCCCCCH----HHHHHHHhCC-----------cEEEEECCHHHHHHHHHHh
Confidence 34555554444 5589999999986 6666665432 3999998887666655443
No 108
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=27.91 E-value=83 Score=29.68 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=33.1
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
.-.|+|+|.|.|.-...| +.+. |.-+||||+.+.+.++.+.+++..
T Consensus 41 ~~~VLDiGcGtG~~~~~l----a~~~---------p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEM----AKAN---------PDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CCeEEEEccCCCHHHHHH----HHHC---------CCccEEEEEechHHHHHHHHHHHH
Confidence 557999999999755444 3322 345899999998888877766543
No 109
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=98 Score=31.76 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 176 ANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 176 aNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
.-+.+||-+.... .-+|+|||.|+|+==. .|+.+ .|..+||=++.+...++-..++|.
T Consensus 146 GS~lLl~~l~~~~-~~~vlDlGCG~Gvlg~----~la~~---------~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 146 GSRLLLETLPPDL-GGKVLDLGCGYGVLGL----VLAKK---------SPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred HHHHHHHhCCccC-CCcEEEeCCCccHHHH----HHHHh---------CCCCeEEEEecCHHHHHHHHHhHH
Confidence 4678889998886 5699999999985322 23332 359999999998878877766664
No 110
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.95 E-value=1.2e+02 Score=28.54 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=45.8
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHhhhc
Q 048299 67 MRQLLISCA-ELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNL 121 (459)
Q Consensus 67 L~~lLl~cA-eAV~~gd~~~A~~lL~~L~~~aSp~Gd~~qRlA~yFaeAL~~Rl~~ 121 (459)
+..+|+.+. ..+..++...|..++..|..+..|..+-..|+...|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 555666665 7788889999999999999988887788899999999999765554
No 111
>PLN02866 phospholipase D
Probab=26.32 E-value=96 Score=36.99 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHhhhCCceEEEEEcccC---------CCCCcHHHHHHHhhcccCCCCCCCCCeEEEe
Q 048299 178 QAILESLQVGQQSIHILDFDIM---------HGVQWPPLMQALVERFKNSNMLQPPPMLRIT 230 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~---------~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT 230 (459)
.|+++|++.+++.|||+|+.+. .+..+-.|.+.|..+.. ..-.+||-
T Consensus 347 ~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~rKAk------rGVkVrVL 402 (1068)
T PLN02866 347 EAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEAKAK------QGVQIYIL 402 (1068)
T ss_pred HHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHHHHH------CCCEEEEE
Confidence 4788999999889999999987 55678889999987765 33456654
No 112
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=26.16 E-value=2.4e+02 Score=28.23 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=47.5
Q ss_pred cCCCcchh--hHhHHHHHHHHhhhCC-ceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHH
Q 048299 165 ITPFIRFS--HLTANQAILESLQVGQ-QSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQR 241 (459)
Q Consensus 165 ~~P~~kfa--~ftaNqAILEA~~g~~-~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~e 241 (459)
+-|-.-|+ +..+.+..++.++... ..-.|+|+|.|.|. |...++. .+ + -++++|+.+...++.
T Consensus 132 ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~-~g-------~--~~V~avDid~~al~~ 197 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALK-LG-------A--AKVVGIDIDPLAVES 197 (288)
T ss_pred ECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHH-cC-------C--CeEEEEECCHHHHHH
Confidence 44554443 4455666666665321 14579999999984 3344443 22 1 289999999888888
Q ss_pred HHHHHHHHHHHcCCeEEEE
Q 048299 242 TGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 242 tg~rL~~fA~~lgvpFeF~ 260 (459)
+.+++. ..++...+.
T Consensus 198 a~~n~~----~n~~~~~~~ 212 (288)
T TIGR00406 198 ARKNAE----LNQVSDRLQ 212 (288)
T ss_pred HHHHHH----HcCCCcceE
Confidence 776654 345544333
No 113
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=26.00 E-value=5.9e+02 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=25.6
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQR 241 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~e 241 (459)
.-.|+|+|.|.|. =...||.+ | ..+|||+.+...++.
T Consensus 35 ~~rvLd~GCG~G~----da~~LA~~-G----------~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSL----DLAWLAEQ-G----------HRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchh----HHHHHHhC-C----------CeEEEEeCCHHHHHH
Confidence 4479999999883 23335543 3 479999988777763
No 114
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=25.81 E-value=2.9e+02 Score=26.27 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=39.7
Q ss_pred eEEE-EEccc---CCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecC------CHHHHHHHHHHHHHHHHHc----CC
Q 048299 190 SIHI-LDFDI---MHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGN------DIEILQRTGERLLKFAQSL----GL 255 (459)
Q Consensus 190 ~VHI-IDf~I---~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~------~~~~l~etg~rL~~fA~~l----gv 255 (459)
.||| ||-|. -+|+.+..+.+.+..- . .-|.|+|.||.. +.+...+.-+.+.++++.+ |+
T Consensus 118 ~v~lkvdtG~~~~R~G~~~~~~~~~~~~i-~------~~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 190 (222)
T cd00635 118 DVLVQVNIGGEESKSGVAPEELEELLEEI-A------ALPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGV 190 (222)
T ss_pred cEEEEEecCCCCCCCCCCHHHHHHHHHHH-H------cCCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6888 88884 4788655444333222 2 346789999852 2345666677777777766 56
Q ss_pred eEEEE
Q 048299 256 RFQFH 260 (459)
Q Consensus 256 pFeF~ 260 (459)
++++-
T Consensus 191 ~~~~i 195 (222)
T cd00635 191 NLKEL 195 (222)
T ss_pred CCCEE
Confidence 66654
No 115
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=25.16 E-value=1.6e+02 Score=29.48 Aligned_cols=39 Identities=31% Similarity=0.363 Sum_probs=33.1
Q ss_pred CCCeEEEeEecCC----HHHHHHHHHHHHHHHHHcCCeEEEEE
Q 048299 223 PPPMLRITGTGND----IEILQRTGERLLKFAQSLGLRFQFHP 261 (459)
Q Consensus 223 gpp~LRIT~i~~~----~~~l~etg~rL~~fA~~lgvpFeF~~ 261 (459)
|||.-|||...++ ...|+++-..+.+..+..|..|.|+.
T Consensus 217 g~P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~gg~~~~~r 259 (262)
T PRK03987 217 GAPRYRIDVTAPDYKTAEKALKKIAERAIKVIKKLGGEGSFVR 259 (262)
T ss_pred CCCeEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 7888888888776 35789999999999999999999973
No 116
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=24.96 E-value=2.3e+02 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=32.7
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
..+|+|+|.|.|. +...|+... |..++|+++.+...++.+.+++.
T Consensus 109 ~~~vLDiG~GsG~----~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 109 PLRVLDLGTGSGA----IALALAKER---------PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCEEEEEcCcHHH----HHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHH
Confidence 6789999999984 334444322 35689999999888887777655
No 117
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=24.69 E-value=77 Score=31.87 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=20.6
Q ss_pred hhCCceEEEEEcccCCCCCcHHHHHHHhh
Q 048299 185 QVGQQSIHILDFDIMHGVQWPPLMQALVE 213 (459)
Q Consensus 185 ~g~~~~VHIIDf~I~~G~QWp~LiqaLa~ 213 (459)
.|.+ .+||||+|-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~-~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLT-GGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCC-EEEEEECCCCCccc-HHHHHHHHh
Confidence 5776 99999999866677 456666766
No 118
>PRK03646 dadX alanine racemase; Reviewed
Probab=24.18 E-value=1.5e+02 Score=30.89 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=32.3
Q ss_pred eEEE-EEcccC-CCCCc---HHHHHHHhhcccCCCCCCCCCeEEEeEecCC---HHHHHHHHHHHHHHHHH
Q 048299 190 SIHI-LDFDIM-HGVQW---PPLMQALVERFKNSNMLQPPPMLRITGTGND---IEILQRTGERLLKFAQS 252 (459)
Q Consensus 190 ~VHI-IDf~I~-~G~QW---p~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~---~~~l~etg~rL~~fA~~ 252 (459)
+||| ||-|++ .|+.+ +.+++.+. ..|.|+|+||... .+....|.+.+.+|.+-
T Consensus 118 ~vhLkvDTGM~R~G~~~~e~~~~~~~i~----------~~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~~ 178 (355)
T PRK03646 118 DIYLKVNSGMNRLGFQPERVQTVWQQLR----------AMGNVGEMTLMSHFARADHPDGISEAMARIEQA 178 (355)
T ss_pred EEEEEeeCCCCCCCCCHHHHHHHHHHHH----------hCCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHH
Confidence 6898 999986 57754 44544442 3457999999643 22222355666666443
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=23.93 E-value=1.2e+02 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=32.2
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
||+|+|.|.|..=..| +. .-|..+|+|++-+.+.++-+.++...
T Consensus 113 ~ilDlGTGSG~iai~l----a~---------~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIAL----AK---------EGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHH----Hh---------hCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 9999999999643332 22 23469999999999888887776443
No 120
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=23.66 E-value=2.7e+02 Score=27.52 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=53.3
Q ss_pred HHHHHhhhh-cCCCCcHHHH-HHHHHHHhHhHHHHHhhcCCCcccc-ccchhHHHHHHHhCCCccccCChHHHHHHHHHH
Q 048299 349 GAIFDSLEA-TLPPNSRERL-AVEQVWFGREIVEIVATEGENRKER-HERFDSWEMILRSCGYSNVPLSGYALSQAKLLL 425 (459)
Q Consensus 349 salFDsLea-~l~~~~~eR~-~iE~~~lg~eI~niVA~eG~~R~eR-~E~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll 425 (459)
--.-+-|.. -++-+-++|. ++|. -.++|.|+|+....+..-+ |-+-..=...|+.|||...|+.+ +..|+...+
T Consensus 74 eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evl 150 (234)
T COG1500 74 EIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVL 150 (234)
T ss_pred HHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHH
Confidence 333344443 2344455654 4553 5789999999998766544 66667888899999999999954 567888877
Q ss_pred hh
Q 048299 426 RL 427 (459)
Q Consensus 426 ~~ 427 (459)
+.
T Consensus 151 K~ 152 (234)
T COG1500 151 KA 152 (234)
T ss_pred HH
Confidence 65
No 121
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=23.22 E-value=6.5e+02 Score=26.20 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=57.9
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCC-eEEEEEeecCCCCCC
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGL-RFQFHPLLLMNDDPT 270 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgv-pFeF~~v~~~~~e~~ 270 (459)
+|+|++.|.| .+--.||. ++ -+++||+.+...++.+.+++. ..|+ ..+|. .. +.+..
T Consensus 236 ~vLDL~cG~G----~~~l~la~-~~----------~~v~~vE~~~~av~~a~~N~~----~~~~~~~~~~--~~-d~~~~ 293 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAG-PD----------TQLTGIEIESEAIACAQQSAQ----MLGLDNLSFA--AL-DSAKF 293 (374)
T ss_pred EEEEccCCcc----HHHHHHhh-cC----------CeEEEEECCHHHHHHHHHHHH----HcCCCcEEEE--EC-CHHHH
Confidence 6899998888 23334442 22 279999999888887776653 3455 34443 22 11111
Q ss_pred ccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHHHhcCCCeEEEEecC
Q 048299 271 SVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAERE 329 (459)
Q Consensus 271 ~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~ir~L~P~iv~~~E~e 329 (459)
. . .. ..+-++|++|=+.. + .-..++..|..++|+-+|.++-+
T Consensus 294 ~-----~-~~-~~~~D~vi~DPPr~--------G--~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 294 A-----T-AQ-MSAPELVLVNPPRR--------G--IGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred H-----H-hc-CCCCCEEEECCCCC--------C--CcHHHHHHHHhcCCCeEEEEEeC
Confidence 0 0 01 01236777774410 1 23567888888999988887743
No 122
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=22.62 E-value=2.2e+02 Score=30.72 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 205 PPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 205 p~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
|.||+.|..++. .-|--.|+-++.+.+.++.++....++++..|.+++|.
T Consensus 14 p~li~~l~~~~~------~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~ 63 (437)
T cd05298 14 PGIVKSLLDRKE------DFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFV 63 (437)
T ss_pred HHHHHHHHhCcc------cCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 589999999864 34445566667788889999999999999999998888
No 123
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=22.33 E-value=4.2e+02 Score=25.73 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=65.7
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe--EEEEEeecC--CC
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR--FQFHPLLLM--ND 267 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp--FeF~~v~~~--~~ 267 (459)
.|+|+|.+.| .|+..|++..= ..| +|||+-+...++- -...|+.-+++ .+|...-.. .+
T Consensus 70 ~VlDLGtGNG----~~L~~L~~egf------~~~---L~GvDYs~~AV~L----A~niAe~~~~~n~I~f~q~DI~~~~~ 132 (227)
T KOG1271|consen 70 RVLDLGTGNG----HLLFQLAKEGF------QSK---LTGVDYSEKAVEL----AQNIAERDGFSNEIRFQQLDITDPDF 132 (227)
T ss_pred ceeeccCCch----HHHHHHHHhcC------CCC---ccccccCHHHHHH----HHHHHHhcCCCcceeEEEeeccCCcc
Confidence 8999999998 57888876442 112 8999877555544 23446666666 666633221 11
Q ss_pred CCCccccccccccccCCCCeEEEehhhhhhhhccCCCCh-hHHHHHHHHH-hcCCC-eEEEEecCCCCCCcchHHHHHHH
Q 048299 268 DPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTR-DLRLFLHKIK-ALNPR-VVTIAEREASHNHPLFLQRFVEA 344 (459)
Q Consensus 268 e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~-~~~~~L~~ir-~L~P~-iv~~~E~ea~~n~~~F~~RF~ea 344 (459)
..-+ .++-+++|-.=||... ++ ... .+...+..|. -|+|. |+++ -.||+.-..+.++|.+-
T Consensus 133 ~~~q------fdlvlDKGT~DAisLs-------~d-~~~~r~~~Y~d~v~~ll~~~gifvI--tSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 133 LSGQ------FDLVLDKGTLDAISLS-------PD-GPVGRLVVYLDSVEKLLSPGGIFVI--TSCNFTKDELVEEFENF 196 (227)
T ss_pred cccc------eeEEeecCceeeeecC-------CC-CcccceeeehhhHhhccCCCcEEEE--EecCccHHHHHHHHhcC
Confidence 1111 2344555644444322 11 111 1244455554 34666 4444 46777777777777654
No 124
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=22.23 E-value=2.1e+02 Score=30.63 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q 048299 205 PPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFH 260 (459)
Q Consensus 205 p~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~ 260 (459)
|.||+.|..++. .-|--.|+-++.+.+.++.++....++++..|.+++|.
T Consensus 14 p~li~~l~~~~~------~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~ 63 (425)
T cd05197 14 PELVSGLLKTPE------ELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFE 63 (425)
T ss_pred HHHHHHHHcChh------hCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 588999999985 45556677777788889999999999999999998887
No 125
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=22.13 E-value=1.9e+02 Score=28.95 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=33.4
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
..+|+|+|.|.|. +.-.|+.+. |..++|||+.+...++.+.++..
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~ 166 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---------PEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHH
Confidence 4589999999985 445555532 35699999999888888777643
No 126
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=21.35 E-value=2.2e+02 Score=27.72 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=35.8
Q ss_pred EEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCe-EEEE
Q 048299 191 IHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLR-FQFH 260 (459)
Q Consensus 191 VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvp-FeF~ 260 (459)
.|++|.|-|-|+ |.+.=+++. |.+++|-|++..-... -|.+.++.+|++ .++.
T Consensus 69 ~~~~DIGSGaGf--PGipLAI~~-----------p~~~vtLles~~Kk~~----FL~~~~~eL~L~nv~i~ 122 (215)
T COG0357 69 KRVLDIGSGAGF--PGIPLAIAF-----------PDLKVTLLESLGKKIA----FLREVKKELGLENVEIV 122 (215)
T ss_pred CEEEEeCCCCCC--chhhHHHhc-----------cCCcEEEEccCchHHH----HHHHHHHHhCCCCeEEe
Confidence 589998776665 788777643 5678999997633322 245556777887 7755
No 127
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.14 E-value=3.5e+02 Score=28.71 Aligned_cols=155 Identities=23% Similarity=0.309 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeecCCC-CCCccccccccccccCCCCeEEEehhhhhhhhccCCCC---hhHHHHHHHHH
Q 048299 241 RTGERLLKFAQSLGLRFQFHPLLLMND-DPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDT---RDLRLFLHKIK 316 (459)
Q Consensus 241 etg~rL~~fA~~lgvpFeF~~v~~~~~-e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~---~~~~~~L~~ir 316 (459)
.-|.|+.+.|+.+|.+...-. . .| +.+++. .+.+.|.-.+ ++=+|-+. | .+.++ ++++.+=..+|
T Consensus 90 ~FG~R~~~ia~~~g~~v~~~~--~-~wg~~v~p~-~v~~~L~~~~-~~~~V~~v---H---~ETSTGvlnpl~~I~~~~k 158 (383)
T COG0075 90 KFGERFAEIAERYGAEVVVLE--V-EWGEAVDPE-EVEEALDKDP-DIKAVAVV---H---NETSTGVLNPLKEIAKAAK 158 (383)
T ss_pred hHHHHHHHHHHHhCCceEEEe--C-CCCCCCCHH-HHHHHHhcCC-CccEEEEE---e---ccCcccccCcHHHHHHHHH
Confidence 468899999999998876442 2 23 333321 1123344222 22122222 2 12111 56777777777
Q ss_pred hcCCCeEEEEecCCC-----------------------CCCc------chHHHHHHHHH------HHHHHHHhhh---h-
Q 048299 317 ALNPRVVTIAEREAS-----------------------HNHP------LFLQRFVEAVD------HYGAIFDSLE---A- 357 (459)
Q Consensus 317 ~L~P~iv~~~E~ea~-----------------------~n~~------~F~~RF~eaL~------~YsalFDsLe---a- 357 (459)
+- ..+++|+--+. ...| .+-+|..+++. ||--+.+-++ .
T Consensus 159 ~~--g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~ 236 (383)
T COG0075 159 EH--GALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236 (383)
T ss_pred Hc--CCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhc
Confidence 76 55555553221 1111 44567666665 6655544433 2
Q ss_pred -cCCCCcHHHHHHHHHHHhHhHHHHHhhcC-CCccccccchhHH-HHHHHhCCCcccc
Q 048299 358 -TLPPNSRERLAVEQVWFGREIVEIVATEG-ENRKERHERFDSW-EMILRSCGYSNVP 412 (459)
Q Consensus 358 -~l~~~~~eR~~iE~~~lg~eI~niVA~eG-~~R~eR~E~~~~W-~~r~~~aGF~~~~ 412 (459)
..|-+.+--. .+-=++-.+.|..|| ..|.+||.....+ ++.|+..||+.++
T Consensus 237 ~~~p~Tppv~~----i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 237 GSTPYTPPVNL----IYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred CCCCCCCCHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 1222222211 011123445566777 6788999887755 5568889999887
No 128
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=20.98 E-value=2e+02 Score=30.58 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 180 ILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 180 ILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
+++.+.+.. .-.|||+|.|.| .++-.+|.+. |...++||+.....+..+.++..
T Consensus 114 ~~~~~~~~~-~p~vLEIGcGsG----~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~ 167 (390)
T PRK14121 114 FLDFISKNQ-EKILIEIGFGSG----RHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIE 167 (390)
T ss_pred HHHHhcCCC-CCeEEEEcCccc----HHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHH
Confidence 455666665 667899999998 4555666543 46789999988888777766653
No 129
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=20.76 E-value=1.2e+02 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=26.0
Q ss_pred HHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhccc
Q 048299 178 QAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFK 216 (459)
Q Consensus 178 qAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~ 216 (459)
+.|++.+....++++|.=||++...- +.+|+.||...+
T Consensus 113 ~~i~~~v~~~~~~~~i~~~~~g~~~~-~~~L~~LA~~~~ 150 (155)
T PF13768_consen 113 EEILDLVRRARGHIRIFTFGIGSDAD-ADFLRELARATG 150 (155)
T ss_pred HHHHHHHHhcCCCceEEEEEECChhH-HHHHHHHHHcCC
Confidence 45556665443367777777777665 588888888776
No 130
>PLN03075 nicotianamine synthase; Provisional
Probab=20.71 E-value=7.6e+02 Score=25.26 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred EEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCc
Q 048299 192 HILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTS 271 (459)
Q Consensus 192 HIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~ 271 (459)
.|+|+|.|.|-=|..++.+- -.|.-++|||+.+.+.++.+.+.+.+ ...+.=..+|+..-. .+...
T Consensus 126 ~VldIGcGpgpltaiilaa~-----------~~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~Da--~~~~~ 191 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKH-----------HLPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTADV--MDVTE 191 (296)
T ss_pred EEEEECCCCcHHHHHHHHHh-----------cCCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEECch--hhccc
Confidence 48999998876666555433 12445999999998888766654433 111221345552211 11110
Q ss_pred cccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCeEEEEec
Q 048299 272 VAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRVVTIAER 328 (459)
Q Consensus 272 ~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~iv~~~E~ 328 (459)
. ..+=+.|.+. .||++... ....+|+.| +.|+|.-++++.-
T Consensus 192 -------~--l~~FDlVF~~---ALi~~dk~----~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -------S--LKEYDVVFLA---ALVGMDKE----EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -------c--cCCcCEEEEe---cccccccc----cHHHHHHHHHHhcCCCcEEEEec
Confidence 0 1111344444 67888322 244555554 6799998888875
No 131
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=20.39 E-value=55 Score=34.41 Aligned_cols=11 Identities=45% Similarity=0.912 Sum_probs=9.3
Q ss_pred ceEEEEEcccC
Q 048299 189 QSIHILDFDIM 199 (459)
Q Consensus 189 ~~VHIIDf~I~ 199 (459)
..|||||||+.
T Consensus 166 n~IhiiDFGmA 176 (449)
T KOG1165|consen 166 NVIHIIDFGMA 176 (449)
T ss_pred ceEEEEeccch
Confidence 37999999974
No 132
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=20.29 E-value=1.9e+02 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhhCCceEEEEEcccCCC--CCcHHHHHHHhhcccCCCCCCCCCeEEEeEecC
Q 048299 175 TANQAILESLQVGQQSIHILDFDIMHG--VQWPPLMQALVERFKNSNMLQPPPMLRITGTGN 234 (459)
Q Consensus 175 taNqAILEA~~g~~~~VHIIDf~I~~G--~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~ 234 (459)
...++|++++..+++.|.|.-+-...+ ..++.|+++|..... - -++|+.|-.
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~------r--Gv~V~il~~ 74 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLITEYGPVILDALLAAAR------R--GVKVRILVD 74 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccccccchHHHHHHHHHHH------C--CCEEEEEEc
Confidence 345678888888777899988755544 558999999988775 2 456666543
No 133
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=20.17 E-value=2.8e+02 Score=27.22 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=32.8
Q ss_pred eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 048299 190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLK 248 (459)
Q Consensus 190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~ 248 (459)
..+|+|+|.|.|. +.-.|+.+.. ..++|+|+.+...++.+.+++..
T Consensus 87 ~~~vLDlg~GsG~----i~l~la~~~~---------~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 87 TLVVVDLCCGSGA----VGAALAAALD---------GIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CCEEEEecCchHH----HHHHHHHhCC---------CCEEEEEECCHHHHHHHHHHHHH
Confidence 4579999998874 4444444332 36899999998888887777643
No 134
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=20.11 E-value=2.2e+02 Score=27.90 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=37.3
Q ss_pred HhHHHHHHHHhhh----CCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 048299 174 LTANQAILESLQV----GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLL 247 (459)
Q Consensus 174 ftaNqAILEA~~g----~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~ 247 (459)
|..++.|++.+-. .+ .=+|+|+|.|.|. |...|+.+ + . ++|+|+.+...++...+++.
T Consensus 11 fl~d~~~~~~iv~~~~~~~-~~~VLEIG~G~G~----lt~~L~~~-~------~----~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTD-GDPVLEIGPGKGA----LTDELAKR-A------K----KVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred ccCCHHHHHHHHHhcCCCC-cCeEEEEeCccCH----HHHHHHHh-C------C----EEEEEECCHHHHHHHHHHhc
Confidence 4444444444332 22 4479999999985 55556654 3 2 69999998877776666553
No 135
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=20.09 E-value=65 Score=25.58 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.6
Q ss_pred cchhHHHHHHHhCCCccccC
Q 048299 394 ERFDSWEMILRSCGYSNVPL 413 (459)
Q Consensus 394 E~~~~W~~r~~~aGF~~~~l 413 (459)
|+..+-|.+|+.+|++|+.+
T Consensus 3 ~RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHHcCCCccee
Confidence 45567789999999999976
Done!