BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048302
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 217/510 (42%), Gaps = 60/510 (11%)
Query: 82 PFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQXXXXXXXXXX 141
PFL + S+L+ LD+S N L G S +S LK+L++ NQ G +P
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 142 XXXXNSFTGEMPSEL-GDIKQLKSLDFSGNGLNGTFPSRXXXXXXXXXXXXXXXXXXXXX 200
N FTGE+P L G L LD SGN G P
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 201 PVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKK-------------------------- 234
P+ ++ L LD+S N SG +P + NL
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 235 -LSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAEL-QIFTFSAGMNQL 292
L +LYL N FTG IP L NC L ++ LS N LSG++P L L ++ +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 293 SGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSG 352
G +P L +++L L N G IP + NC+ L ISLSNN+L+G IP+ +
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFT 412
+L + L N SG I C +L L L N +G+IP + + K+ N
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIA 568
Query: 413 GVIPVSLWNSENLMEFNAASNLLE--------------------------GSLSWEIGNA 446
G V + N E + A NLLE G S N
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 447 VALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXX 506
++ LD+S NML+G IPK+IG++ + IL L N G IP E GD
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 507 XXXSIPEKIADLTQLQFLDLSHNNLSGPIP 536
IP+ ++ LT L +DLS+NNLSGPIP
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 141/499 (28%), Positives = 217/499 (43%), Gaps = 65/499 (13%)
Query: 52 RHCDWFGVKCR--HSRVVS-------LVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFG 102
+H D G K SR +S L I + GP+ P L SL+ L L++N G
Sbjct: 223 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 280
Query: 103 QLSPQVSN-LKRLKMLSLGENQLSGSVPSQXXXXXXXXXXXXXXNSFTGEMPSE-LGDIK 160
++ +S L L L N G+VP N+F+GE+P + L ++
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 161 QLKSLDFSGNGLNGTFPSRXXXXXXXXXXXXXXXXXXXXXPV--SLFTNLQ-SLSYLDVS 217
LK LD S N +G P P+ +L N + +L L +
Sbjct: 341 GLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 218 NNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQL 277
NN +G IPP + N +L L+L N +G+IP+ LG+ L+ + L LN L G +P++L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 278 AELQIF-TFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLS 336
++ T N L+G +PS L ++ + L NN+ G IP IG L + LS
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 337 NNKLSGPIPRELCDSGSLVEINLDGNMLSGTI--------------------------ED 370
NN SG IP EL D SL+ ++L+ N+ +GTI +
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 371 VFDRCTNLSELVL-------------------VNNRISG--SIPEYISELPLKVLDLQYN 409
+ C L+ + +R+ G + P + + + LD+ YN
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 410 NFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGN 469
+G IP + + L N N + GS+ E+G+ L LDLSSN L G+IP+ +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 470 LTNIQILKLNSNFFDGIIP 488
LT + + L++N G IP
Sbjct: 700 LTMLTEIDLSNNNLSGPIP 718
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 201/449 (44%), Gaps = 47/449 (10%)
Query: 61 CRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQ------LSPQVSNLKRL 114
C + +++ T G VS L L+SL +LDLS N + G LS LK L
Sbjct: 122 CSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 180
Query: 115 KMLSLGENQLSGSVPSQXXXXXXXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNG 174
++ N++SG V N+F+ +P LGD L+ LD SGN L+G
Sbjct: 181 ---AISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 175 TFPSRXXXXXXXXXXXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKK 234
F SR + L L++S+N G IPP LK
Sbjct: 235 DF-SRA------------------------ISTCTELKLLNISSNQFVGPIPPLP--LKS 267
Query: 235 LSDLYLGINQFTGSIPAEL-GNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGM-NQL 292
L L L N+FTG IP L G C L + LS N G++P + A N
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 293 SGPLP-SWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSM-LKCISLSNNKLSGPIPRELCD 350
SG LP L K + L L N+F G +P + N S L + LS+N SGPI LC
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 351 S--GSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISEL-PLKVLDLQ 407
+ +L E+ L N +G I C+ L L L N +SG+IP + L L+ L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 408 YNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKI 467
N G IP L + L N L G + + N L + LS+N LTG+IPK I
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 468 GNLTNIQILKLNSNFFDGIIPMEFGDCIS 496
G L N+ ILKL++N F G IP E GDC S
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRS 536
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 159/554 (28%), Positives = 247/554 (44%), Gaps = 73/554 (13%)
Query: 26 QERRSLVHFKNSLQNPQVLSGWNKTTRHCDWFGVKCRHSRVVSLVIQTQSLK-------- 77
+E L+ FK+ L + +L W+ C + GV CR +V S+ + ++ L
Sbjct: 9 REIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSS 68
Query: 78 -------------------GPVSPFLYNLSSLRILDLSKNLLFGQLSPQVS--NLKRLKM 116
G VS F + +SL LDLS+N L G ++ S + LK
Sbjct: 69 SLLSLTGLESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 127
Query: 117 LSLGENQLS--GSVPSQXXXXXXXXXXXXXXNSFTGE--MPSELGD-IKQLKSLDFSGNG 171
L++ N L G V S NS +G + L D +LK L SGN
Sbjct: 128 LNVSSNTLDFPGKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 186
Query: 172 LNGTFPSRXXXXXXXXXXXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGN 231
++G VS NL+ +LDVS+N S IP +G+
Sbjct: 187 ISGDVD------------------------VSRCVNLE---FLDVSSNNFSTGIP-FLGD 218
Query: 232 LKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPE-QLAELQIFTFSAGMN 290
L L + N+ +G + C LK + +S N G +P L LQ + + N
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE--N 276
Query: 291 QLSGPLPSWL-GKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRE-L 348
+ +G +P +L G + + L L N F G +PP G+CS+L+ ++LS+N SG +P + L
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 336
Query: 349 CDSGSLVEINLDGNMLSGTI-EDVFDRCTNLSELVLVNNRISGSIPEYISELP---LKVL 404
L ++L N SG + E + + +L L L +N SG I + + P L+ L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 405 DLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIP 464
LQ N FTG IP +L N L+ + + N L G++ +G+ L +L L NML G+IP
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 465 KKIGNLTNIQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFL 524
+++ + ++ L L+ N G IP +C + IP+ I L L L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 525 DLSHNNLSGPIPSK 538
LS+N+ SG IP++
Sbjct: 517 KLSNNSFSGNIPAE 530
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 168/380 (44%), Gaps = 74/380 (19%)
Query: 64 SRVVSLVIQTQSLKGPVSPFLYN--LSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGE 121
+ +++L + + + GP+ P L ++L+ L L N G++ P +SN L L L
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 122 NQLSGSVPSQXXXXXXXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRXX 181
N LSG++PS N GE+P EL +K L++L N L G PS
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-- 482
Query: 182 XXXXXXXXXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLG 241
+N +L+++ +SNN L+G IP IG L+ L+ L L
Sbjct: 483 -----------------------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 242 INQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQL-------------AELQIFTFSAG 288
N F+G+IPAELG+CR+L + L+ N +G++P + + ++ + G
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 289 MNQL---SGPLPSWLG-KWNQMDSLWLYN------------------------------N 314
M + +G L + G + Q++ L N N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 315 QFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDR 374
G IP EIG+ L ++L +N +SG IP E+ D L ++L N L G I
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 375 CTNLSELVLVNNRISGSIPE 394
T L+E+ L NN +SG IPE
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE 719
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 134/350 (38%), Gaps = 72/350 (20%)
Query: 69 LVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSV 128
L +Q G + P L N S L L LS N L G + + +L +L+ L L N L G +
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 129 PSQXXXXXXXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRXXXXXXXXX 188
P + N TGE+PS L + L + S N L G P
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK---------- 505
Query: 189 XXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGS 248
L++L+ L +SNN SGNIP E+G+ + L L L N F G+
Sbjct: 506 ---------------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 249 IPAEL--------------------------------GNCRNLKAVVLS-LNALSGSLPE 275
IPA + GN + + LN LS P
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 276 QLAEL--------------QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIP 321
+ + N LSG +P +G + L L +N G IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 322 PEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDV 371
E+G+ L + LS+NKL G IP+ + L EI+L N LSG I ++
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 115/269 (42%), Gaps = 23/269 (8%)
Query: 68 SLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGS 127
+L++ L G + L N ++L + LS N L G++ + L+ L +L L N SG+
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 128 VPSQXXXXXXXXXXXXXXNSFTGEMPSELGD---------IKQLKSLDFSGNGLNGTFPS 178
+P++ N F G +P+ + I + + +G+
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 179 RXXXXXXXXXXXXXXXXXXXXXPVSL------------FTNLQSLSYLDVSNNLLSGNIP 226
P ++ F N S+ +LD+S N+LSG IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 227 PEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFT-F 285
EIG++ L L LG N +GSIP E+G+ R L + LS N L G +P+ ++ L + T
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 286 SAGMNQLSGPLPSWLGKWNQMDSLWLYNN 314
N LSGP+P +G++ NN
Sbjct: 707 DLSNNNLSGPIPE-MGQFETFPPAKFLNN 734
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 33/187 (17%)
Query: 383 LVNNRISGSIPEYISELPLKVLDLQYNNFTGVIP--VSLWNSENLMEFNAASNLLE--GS 438
L N+ I+GS+ + L LDL N+ +G + SL + L N +SN L+ G
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 439 LS-------------------------WEIGNAVA-LEELDLSSNMLTGQIPKKIGNLTN 472
+S W + + L+ L +S N ++G + + N
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 198
Query: 473 IQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFLDLSHNNLS 532
++ L ++SN F IP GDC + I+ T+L+ L++S N
Sbjct: 199 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 533 GPIPSKP 539
GPIP P
Sbjct: 258 GPIPPLP 264
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 217/510 (42%), Gaps = 60/510 (11%)
Query: 82 PFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQXXXXXXXXXX 141
PFL + S+L+ LD+S N L G S +S LK+L++ NQ G +P
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 142 XXXXNSFTGEMPSEL-GDIKQLKSLDFSGNGLNGTFPSRXXXXXXXXXXXXXXXXXXXXX 200
N FTGE+P L G L LD SGN G P
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 201 PVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKK-------------------------- 234
P+ ++ L LD+S N SG +P + NL
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 235 -LSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAEL-QIFTFSAGMNQL 292
L +LYL N FTG IP L NC L ++ LS N LSG++P L L ++ +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 293 SGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSG 352
G +P L +++L L N G IP + NC+ L ISLSNN+L+G IP+ +
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFT 412
+L + L N SG I C +L L L N +G+IP + + K+ N
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIA 571
Query: 413 GVIPVSLWNSENLMEFNAASNLLE--------------------------GSLSWEIGNA 446
G V + N E + A NLLE G S N
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 447 VALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXX 506
++ LD+S NML+G IPK+IG++ + IL L N G IP E GD
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 507 XXXSIPEKIADLTQLQFLDLSHNNLSGPIP 536
IP+ ++ LT L +DLS+NNLSGPIP
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 141/499 (28%), Positives = 217/499 (43%), Gaps = 65/499 (13%)
Query: 52 RHCDWFGVKCR--HSRVVS-------LVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFG 102
+H D G K SR +S L I + GP+ P L SL+ L L++N G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283
Query: 103 QLSPQVSN-LKRLKMLSLGENQLSGSVPSQXXXXXXXXXXXXXXNSFTGEMPSE-LGDIK 160
++ +S L L L N G+VP N+F+GE+P + L ++
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 161 QLKSLDFSGNGLNGTFPSRXXXXXXXXXXXXXXXXXXXXXPV--SLFTNLQ-SLSYLDVS 217
LK LD S N +G P P+ +L N + +L L +
Sbjct: 344 GLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 218 NNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQL 277
NN +G IPP + N +L L+L N +G+IP+ LG+ L+ + L LN L G +P++L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 278 AELQIF-TFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLS 336
++ T N L+G +PS L ++ + L NN+ G IP IG L + LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 337 NNKLSGPIPRELCDSGSLVEINLDGNMLSGTI--------------------------ED 370
NN SG IP EL D SL+ ++L+ N+ +GTI +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 371 VFDRCTNLSELVL-------------------VNNRISG--SIPEYISELPLKVLDLQYN 409
+ C L+ + +R+ G + P + + + LD+ YN
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 410 NFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGN 469
+G IP + + L N N + GS+ E+G+ L LDLSSN L G+IP+ +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 470 LTNIQILKLNSNFFDGIIP 488
LT + + L++N G IP
Sbjct: 703 LTMLTEIDLSNNNLSGPIP 721
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 201/449 (44%), Gaps = 47/449 (10%)
Query: 61 CRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQ------LSPQVSNLKRL 114
C + +++ T G VS L L+SL +LDLS N + G LS LK L
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183
Query: 115 KMLSLGENQLSGSVPSQXXXXXXXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNG 174
++ N++SG V N+F+ +P LGD L+ LD SGN L+G
Sbjct: 184 ---AISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 TFPSRXXXXXXXXXXXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKK 234
F SR + L L++S+N G IPP LK
Sbjct: 238 DF-SRA------------------------ISTCTELKLLNISSNQFVGPIPPLP--LKS 270
Query: 235 LSDLYLGINQFTGSIPAEL-GNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGM-NQL 292
L L L N+FTG IP L G C L + LS N G++P + A N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 293 SGPLP-SWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSM-LKCISLSNNKLSGPIPRELCD 350
SG LP L K + L L N+F G +P + N S L + LS+N SGPI LC
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 351 S--GSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISEL-PLKVLDLQ 407
+ +L E+ L N +G I C+ L L L N +SG+IP + L L+ L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 408 YNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKI 467
N G IP L + L N L G + + N L + LS+N LTG+IPK I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 468 GNLTNIQILKLNSNFFDGIIPMEFGDCIS 496
G L N+ ILKL++N F G IP E GDC S
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRS 539
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 159/554 (28%), Positives = 247/554 (44%), Gaps = 73/554 (13%)
Query: 26 QERRSLVHFKNSLQNPQVLSGWNKTTRHCDWFGVKCRHSRVVSLVIQTQSLK-------- 77
+E L+ FK+ L + +L W+ C + GV CR +V S+ + ++ L
Sbjct: 12 REIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSS 71
Query: 78 -------------------GPVSPFLYNLSSLRILDLSKNLLFGQLSPQVS--NLKRLKM 116
G VS F + +SL LDLS+N L G ++ S + LK
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130
Query: 117 LSLGENQLS--GSVPSQXXXXXXXXXXXXXXNSFTGE--MPSELGD-IKQLKSLDFSGNG 171
L++ N L G V S NS +G + L D +LK L SGN
Sbjct: 131 LNVSSNTLDFPGKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189
Query: 172 LNGTFPSRXXXXXXXXXXXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGN 231
++G VS NL+ +LDVS+N S IP +G+
Sbjct: 190 ISGDVD------------------------VSRCVNLE---FLDVSSNNFSTGIP-FLGD 221
Query: 232 LKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPE-QLAELQIFTFSAGMN 290
L L + N+ +G + C LK + +S N G +P L LQ + + N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE--N 279
Query: 291 QLSGPLPSWL-GKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRE-L 348
+ +G +P +L G + + L L N F G +PP G+CS+L+ ++LS+N SG +P + L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 349 CDSGSLVEINLDGNMLSGTI-EDVFDRCTNLSELVLVNNRISGSIPEYISELP---LKVL 404
L ++L N SG + E + + +L L L +N SG I + + P L+ L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 405 DLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIP 464
LQ N FTG IP +L N L+ + + N L G++ +G+ L +L L NML G+IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 465 KKIGNLTNIQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFL 524
+++ + ++ L L+ N G IP +C + IP+ I L L L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 525 DLSHNNLSGPIPSK 538
LS+N+ SG IP++
Sbjct: 520 KLSNNSFSGNIPAE 533
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 168/380 (44%), Gaps = 74/380 (19%)
Query: 64 SRVVSLVIQTQSLKGPVSPFLYN--LSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGE 121
+ +++L + + + GP+ P L ++L+ L L N G++ P +SN L L L
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 122 NQLSGSVPSQXXXXXXXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRXX 181
N LSG++PS N GE+P EL +K L++L N L G PS
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-- 485
Query: 182 XXXXXXXXXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLG 241
+N +L+++ +SNN L+G IP IG L+ L+ L L
Sbjct: 486 -----------------------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 242 INQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQL-------------AELQIFTFSAG 288
N F+G+IPAELG+CR+L + L+ N +G++P + + ++ + G
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 289 MNQL---SGPLPSWLG-KWNQMDSLWLYN------------------------------N 314
M + +G L + G + Q++ L N N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 315 QFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDR 374
G IP EIG+ L ++L +N +SG IP E+ D L ++L N L G I
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 375 CTNLSELVLVNNRISGSIPE 394
T L+E+ L NN +SG IPE
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE 722
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 134/350 (38%), Gaps = 72/350 (20%)
Query: 69 LVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSV 128
L +Q G + P L N S L L LS N L G + + +L +L+ L L N L G +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 129 PSQXXXXXXXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRXXXXXXXXX 188
P + N TGE+PS L + L + S N L G P
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK---------- 508
Query: 189 XXXXXXXXXXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGS 248
L++L+ L +SNN SGNIP E+G+ + L L L N F G+
Sbjct: 509 ---------------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 249 IPAEL--------------------------------GNCRNLKAV-VLSLNALSGSLPE 275
IPA + GN + + LN LS P
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 276 QLAEL--------------QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIP 321
+ + N LSG +P +G + L L +N G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 322 PEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDV 371
E+G+ L + LS+NKL G IP+ + L EI+L N LSG I ++
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 115/269 (42%), Gaps = 23/269 (8%)
Query: 68 SLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGS 127
+L++ L G + L N ++L + LS N L G++ + L+ L +L L N SG+
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 128 VPSQXXXXXXXXXXXXXXNSFTGEMPSELGD---------IKQLKSLDFSGNGLNGTFPS 178
+P++ N F G +P+ + I + + +G+
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 179 RXXXXXXXXXXXXXXXXXXXXXPVSL------------FTNLQSLSYLDVSNNLLSGNIP 226
P ++ F N S+ +LD+S N+LSG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 227 PEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFT-F 285
EIG++ L L LG N +GSIP E+G+ R L + LS N L G +P+ ++ L + T
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 286 SAGMNQLSGPLPSWLGKWNQMDSLWLYNN 314
N LSGP+P +G++ NN
Sbjct: 710 DLSNNNLSGPIPE-MGQFETFPPAKFLNN 737
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 33/187 (17%)
Query: 383 LVNNRISGSIPEYISELPLKVLDLQYNNFTGVIP--VSLWNSENLMEFNAASNLLE--GS 438
L N+ I+GS+ + L LDL N+ +G + SL + L N +SN L+ G
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 439 LS-------------------------WEIGNAVA-LEELDLSSNMLTGQIPKKIGNLTN 472
+S W + + L+ L +S N ++G + + N
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 201
Query: 473 IQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFLDLSHNNLS 532
++ L ++SN F IP GDC + I+ T+L+ L++S N
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 533 GPIPSKP 539
GPIP P
Sbjct: 261 GPIPPLP 267
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 4/219 (1%)
Query: 273 LPEQLAELQI--FTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSML 330
+P LA L F + G+N L GP+P + K Q+ L++ + G IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 331 KCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNL-SELVLVNNRIS 389
+ S N LSG +P + +LV I DGN +SG I D + + L + + + NR++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 390 GSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVAL 449
G IP + L L +DL N G V + +N + + A N L L ++G + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246
Query: 450 EELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIP 488
LDL +N + G +P+ + L + L ++ N G IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 10/234 (4%)
Query: 203 SLFTNLQSLSYLDVSN-NLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKA 261
S NL L++L + N L G IPP I L +L LY+ +G+IP L + L
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 262 VVLSLNALSGSLPEQLAEL-QIFTFSAGMNQLSGPLPSWLGKWNQM-DSLWLYNNQFVGR 319
+ S NALSG+LP ++ L + + N++SG +P G ++++ S+ + N+ G+
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 320 IPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379
IPP N + L + LS N L G + +I+L N L+ + V NL+
Sbjct: 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLN 247
Query: 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAAS 432
L L NNRI G++P+ +++L L L++ +NN G IP NL F+ ++
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSA 297
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 135/333 (40%), Gaps = 35/333 (10%)
Query: 26 QERRSLVHFKNSLQNPQVLSGWNKTTRHCD--WFGVKC----RHSRVVSLVIQTQSLKGP 79
Q++++L+ K L NP LS W TT C+ W GV C + RV +L + +L P
Sbjct: 6 QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65
Query: 80 --VSPFLYNLSSLRILDLSK-NLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQXXXXX 136
+ L NL L L + N L G + P ++ L +L L + +SG++P
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD------ 119
Query: 137 XXXXXXXXXNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRXXXXXXXXXXXXXXXXX 196
L IK L +LDFS N L+GT P
Sbjct: 120 ------------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 197 XXXXPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNC 256
P S + + + + +S N L+G IPP NL L+ + L N G G+
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 257 RNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316
+N + + L+ N+L+ L + + N++ G LP L + + SL + N
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 317 VGRIPPEIGNCSMLKCISLSNNKLSGPIPRELC 349
G I P+ GN + +NNK P C
Sbjct: 281 CGEI-PQGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 128/301 (42%), Gaps = 42/301 (13%)
Query: 249 IPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSG-------PLPSWLG 301
I +LGN L + + + + + + L + T+ LSG P+PS L
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73
Query: 302 KWNQMDSLWLYN-NQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLD 360
++ L++ N VG IPP I + L + +++ +SG IP L +LV ++
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 361 GNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP--LKVLDLQYNNFTGVIPVS 418
N LSGT+ NL + NRISG+IP+ + + N TG IP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 419 LWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKL 478
N NL + + N+LEG S G+ +++ L+ N L + K+G N+ L L
Sbjct: 194 FAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDL 251
Query: 479 NSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFL---DLSHNNLSGPI 535
+N G +P LTQL+FL ++S NNL G I
Sbjct: 252 RNNRIYGTLPQ---------------------------GLTQLKFLHSLNVSFNNLCGEI 284
Query: 536 P 536
P
Sbjct: 285 P 285
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 32/88 (36%)
Query: 457 NMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIA 516
N L G IP I LT + L + G IP + ++P I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 517 DLTQLQFLDLSHNNLSGPIPSKPSSYFR 544
L L + N +SG IP S+ +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSK 174
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 213 YLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGS 272
+LD SNNLL+ + G+L +L L L +NQ EL + + SL
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQL-----KELSKIAEMTTQMKSLQ----- 377
Query: 273 LPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRI----PPEIGNCS 328
+L I S ++ G SW + SL + +N I PP I
Sbjct: 378 ------QLDISQNSVSYDEKKGDC-SWTK---SLLSLNMSSNILTDTIFRCLPPRI---- 423
Query: 329 MLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRI 388
K + L +NK+ IP+++ +L E+N+ N L + +FDR T+L ++ L N
Sbjct: 424 --KVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 389 SGSIP--EYISE 398
S P +Y+S
Sbjct: 481 DCSCPRIDYLSR 492
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 202 VSLFTNLQSLSYLDVSNN-LLSGNIPPEIGNLKKLSDLYLGINQFTG-SIPAELGNCRNL 259
+S+F Q L YLD+S+N L+ + P + NLK L L N F I E GN L
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKISCHPTV-NLKHLD---LSFNAFDALPICKEFGNMSQL 117
Query: 260 KAVVLSLNALSGSLPEQLAELQI 282
K + LS L S +A L I
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNI 140
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 330 LKCISLSNNKLSG-PIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRI 388
++ ++L NKL +EL + L+ L GN L VFD+ TNL ELVLV N++
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 389 SGSIPEYISE--LPLKVLDLQYNNFTGVIPVSLWNS-ENLMEFNAASNLLEGSLSWEIGN 445
S+P+ + + L L+L +N +P +++ NL E + + N L+
Sbjct: 122 Q-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 446 AVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIP 488
L++L L N L LT++Q + L+ N +D P
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 201 PVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPA----ELGNC 256
P +F L +L+YL++++N L L L++L L NQ S+P +L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQL 183
Query: 257 RNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316
++L+ L ++ + ++L LQ + P +L +W S + N+
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS-- 241
Query: 317 VGRIPPEIGNCS 328
G + P+ CS
Sbjct: 242 AGSVAPDSAKCS 253
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 243 NQFTGSIPAELGNCRNLKAVVLSLNALS-----GSLPEQLAELQIFTFSAGMNQLSGPLP 297
N FT S+ + L+ ++L N L + + ++ L+ T +N L+
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE--TLDVSLNSLNSHAY 420
Query: 298 SWLGKWNQ-MDSLWLYNNQFVGRI----PPEIGNCSMLKCISLSNNKLSGPIPRELCDSG 352
W + + L L +N G + PP++ K + L NN++ IP+++
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMS-IPKDVTHLQ 473
Query: 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIP--EYISE 398
+L E+N+ N L + VFDR T+L + L +N + P Y+SE
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 521
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 214 LDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSL 273
LD+SN L NI I L+ LYL N T +PAE+ N NL+ + LS N L+ SL
Sbjct: 229 LDLSN-LQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285
Query: 274 PEQLA---ELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSML 330
P +L +L+ F F + + LP G + L + N + + S+
Sbjct: 286 PAELGSCFQLKYFYF---FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT 342
Query: 331 KCI-SLSNNKLSGPIPRELCDSGSLVEINLDG 361
I L +N+ P+P E +EIN DG
Sbjct: 343 GLIFYLRDNRPEIPLPHE----RRFIEINTDG 370
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 419 LWNS---ENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQI 475
LW++ NL FN ++N+ + L L L+ N LT ++P +I NL+N+++
Sbjct: 225 LWHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRV 274
Query: 476 LKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFLDLSHNNL 531
L L+ N +P E G C ++P + +L LQFL + N L
Sbjct: 275 LDLSHNRLTS-LPAELGSCFQ-LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 378 LSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLE 436
L+ L L N ++ +P I L L+VLDL +N T +P L + L F N++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV- 305
Query: 437 GSLSWEIGNAVALEELDLSSNMLTGQIPK 465
+L WE GN L+ L + N L Q K
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 277 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLS 336
L+ LQIF SA + K++ + L+L N +P EI N S L+ + LS
Sbjct: 231 LSNLQIFNISAN-----------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278
Query: 337 NNKLSGPIPRELCDSGSLVEINLDGNMLS 365
+N+L+ +P EL L NM++
Sbjct: 279 HNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 320 IPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379
+ E+ +CS LK +P +L ++ +NL N L F R + L+
Sbjct: 14 VSHEVADCSHLKLTQ---------VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLT 62
Query: 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS 438
L + N IS PE +LP LKVL+LQ+N + + + NL E + SN ++
Sbjct: 63 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 439 LSWEIGNAVALEELDLSSNMLTG 461
+ L LDLS N L+
Sbjct: 123 KNNPFVKQKNLITLDLSHNGLSS 145
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 311 LYNNQFVGRIPPE-IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEI-NLDGNMLSGTI 368
L +NQ + R+P S L + + N +S P ELC ++++ NL N LS
Sbjct: 42 LTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLS 99
Query: 369 EDVFDRCTNLSELVLVNNRISG-SIPEYISELPLKVLDLQYN 409
+ F CTNL+EL L++N I ++ + L LDL +N
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMD 307
++ E+ +C +LK L + LP + L + NQL + +++Q+
Sbjct: 13 TVSHEVADCSHLK-----LTQVPDDLPTNITVLNL-----THNQLRRLPAANFTRYSQLT 62
Query: 308 SLWLYNNQFVGRIPPEI-GNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSG 366
SL + N + ++ PE+ MLK ++L +N+LS + +L E++L N +
Sbjct: 63 SLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 121
Query: 367 TIEDVFDRCTNLSELVLVNNRISGS 391
+ F + NL L L +N +S +
Sbjct: 122 IKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 324 IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVL 383
+ +CS LK IP +L ++ +NL N L F R + L+ L
Sbjct: 8 VADCSHLKLTH---------IPDDL--PSNITVLNLTHNQLRRLPPTNFTRYSQLAILDA 56
Query: 384 VNNRISGSIPEYISELPL-KVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWE 442
N IS PE LPL KVL+LQ+N + + + NL E + SN + S
Sbjct: 57 GFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNP 116
Query: 443 IGNAVALEELDLSSNMLTG 461
N L +LDLS N L+
Sbjct: 117 FKNQKNLIKLDLSHNGLSS 135
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 335 LSNNKLSGPIPRELC---DSGSLVEINLDGNMLSGTIEDVFD--RCTNLSELVLVNNRIS 389
L+N +L+ + +LC + S+ ++L N L T E F + TNL++L L N +
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH 261
Query: 390 GSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENL 425
S LP L+ L L+YNN + P S + NL
Sbjct: 262 DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 320 IPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379
+ E+ +CS LK +P +L ++ +NL N L F R + L+
Sbjct: 9 VSHEVADCSHLKLTQ---------VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLT 57
Query: 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS 438
L + N IS PE +LP LKVL+LQ+N + + + NL E + SN ++
Sbjct: 58 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 439 LSWEIGNAVALEELDLSSNMLTG 461
+ L LDLS N L+
Sbjct: 118 KNNPFVKQKNLITLDLSHNGLSS 140
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 311 LYNNQFVGRIPPE-IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEI-NLDGNMLSGTI 368
L +NQ + R+P S L + + N +S P ELC ++++ NL N LS
Sbjct: 37 LTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLS 94
Query: 369 EDVFDRCTNLSELVLVNNRISG-SIPEYISELPLKVLDLQYN 409
+ F CTNL+EL L++N I ++ + L LDL +N
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMD 307
++ E+ +C +LK L + LP + L + NQL + +++Q+
Sbjct: 8 TVSHEVADCSHLK-----LTQVPDDLPTNITVLNL-----THNQLRRLPAANFTRYSQLT 57
Query: 308 SLWLYNNQFVGRIPPEI-GNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSG 366
SL + N + ++ PE+ MLK ++L +N+LS + +L E++L N +
Sbjct: 58 SLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 116
Query: 367 TIEDVFDRCTNLSELVLVNNRISGS 391
+ F + NL L L +N +S +
Sbjct: 117 IKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 208 LQSLSYL-DVSNNLLSGNIPPEIGNLKKLSDLYLGI---NQFTGSIPAELGNCRNLKAVV 263
+Q + YL +V L GN +I LK+L++L I NQ NLK +V
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 264 LSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPE 323
L N L SLP+ + + K + L+LY+NQ
Sbjct: 116 LVENQLQ-SLPDGVFD----------------------KLTNLTYLYLYHNQLQSLPKGV 152
Query: 324 IGNCSMLKCISLSNNKLSGPIPRELCDS-GSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382
+ L + L NN+L +P + D L +++L+ N L + VFDR T+L+ +
Sbjct: 153 FDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIW 211
Query: 383 LVNN 386
L+NN
Sbjct: 212 LLNN 215
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 330 LKCISLSNNKLSG-PIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRI 388
++ ++L NKL +EL + L+ L GN L VFD+ TNL ELVLV N++
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 389 SGSIPEYISELPLKVLDLQ----YNNFTGVIPVSLWNS-ENLMEFNAASNLLEGSLSWEI 443
S+P+ + + K+ +L Y+N +P +++ NL + +N L+
Sbjct: 122 Q-SLPDGVFD---KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 444 GNAVALEELDLSSNMLTGQIP----KKIGNLTNIQIL 476
L++L L+ N L +P ++ +LT+I +L
Sbjct: 178 DKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLL 213
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 320 IPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379
+ E+ +CS LK +P +L ++ +NL N L F R + L+
Sbjct: 4 VSHEVADCSHLKLTQ---------VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLT 52
Query: 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS 438
L + N IS PE +LP LKVL+LQ+N + + + NL E + SN ++
Sbjct: 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 439 LSWEIGNAVALEELDLSSNMLTG 461
+ L LDLS N L+
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSS 135
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 311 LYNNQFVGRIPPE-IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEI-NLDGNMLSGTI 368
L +NQ + R+P S L + + N +S P ELC ++++ NL N LS
Sbjct: 32 LTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLS 89
Query: 369 EDVFDRCTNLSELVLVNNRISGSIPE-YISELPLKVLDLQYN 409
+ F CTNL+EL L++N I ++ + L LDL +N
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMD 307
++ E+ +C +LK L + LP + L + NQL + +++Q+
Sbjct: 3 TVSHEVADCSHLK-----LTQVPDDLPTNITVLNL-----THNQLRRLPAANFTRYSQLT 52
Query: 308 SLWLYNNQFVGRIPPEI-GNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSG 366
SL + N + ++ PE+ MLK ++L +N+LS + +L E++L N +
Sbjct: 53 SLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111
Query: 367 TIEDVFDRCTNLSELVLVNNRISGS 391
+ F + NL L L +N +S +
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 16/190 (8%)
Query: 352 GSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRIS--GSIPEY-ISELPLKVLDLQY 408
S + L+ N L VFD+ T L++L L +N +S G + LK LDL +
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 409 NNFTGVIPVS-----LWNSENL-MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQ 462
N GVI +S L E+L + + + E S+ + N + L D+S
Sbjct: 88 N---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DISHTHTRVA 141
Query: 463 IPKKIGNLTNIQILKLNSNFF-DGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQL 521
L+++++LK+ N F + +P F + + P L+ L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 522 QFLDLSHNNL 531
Q L++SHNN
Sbjct: 202 QVLNMSHNNF 211
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPE--YISELPLKVLDLQYNN 410
+L + NLDG +LSG + F T+L LVL +N I P +++ VLDL +N
Sbjct: 109 TLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 411 FTGVIPVSLWNSE----NLMEFNAAS--NLLEGSLSWE-IGNA---VALEELDLSSNMLT 460
+ L N + L+ ++ + ++ E L WE GN ++ LDLS N
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 461 GQIPKKIGNL---TNIQILKLNSNF 482
+ K+ + T IQ L L++++
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSY 250
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPE--YISELPLKVLDLQYNN 410
+L + NLDG +LSG + F T+L LVL +N I P +++ VLDL +N
Sbjct: 109 TLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 411 FTGVIPVSLWNSE----NLMEFNAAS--NLLEGSLSWE-IGNA---VALEELDLSSNMLT 460
+ L N + L+ ++ + ++ E L WE GN ++ LDLS N
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 461 GQIPKKIGNL---TNIQILKLNSNF 482
+ K+ + T IQ L L++++
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSY 250
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 335 LSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISG-SIP 393
+S++ L G +P LV++ L N L+G + F+ +++ EL L N+I S
Sbjct: 44 ISSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 394 EYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASN 433
++ LK L+L N + V+P S + +L N ASN
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 47/240 (19%)
Query: 233 KKLSDLYLGINQF-TGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQ 291
+K+ +Y+G N T + L + L + N L G LP +E+++ + + NQ
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 292 LSGPLPSWLGKWNQMDSLWLYNNQFVGRIP------------------PEIGNCS----- 328
++ ++ G Q+++L +N+ + IP EIG+
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFD 423
Query: 329 ----------MLKCISLSNNKLSGPIPRELCDSGS-LVEINLDGNMLS----GTIEDVFD 373
+ I+LSNN++S P+EL +GS L INL GN L+ +++D +
Sbjct: 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENE 482
Query: 374 RCTN---LSELVLVNNRISGSIPEY-ISELPLKV-LDLQYNNFTGVIPVSLWNSENLMEF 428
N L+ + L N+++ ++ + LP V +DL YN+F+ P NS L F
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 5/181 (2%)
Query: 238 LYLGINQFTGSIPAELGNCRNLKAVVLSLNALS---GSLPEQLAELQIFTFSAGMNQLSG 294
++L N+ + A CRNL + L N L+ + LA L+ S QL
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRS 94
Query: 295 PLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSL 354
P+ ++ +L L P + L+ + L +N L D G+L
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 355 VEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISEL-PLKVLDLQYNNFTG 413
+ L GN +S E F +L L+L NR++ P +L L L L NN +
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 414 V 414
+
Sbjct: 215 L 215
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 50/212 (23%)
Query: 317 VGRIPPEI-GNCSMLKCISLSNNKLSGPIPREL-CDSGSLVEINLDGNMLSGTIEDVFDR 374
+ +PP + N +L + L N LS +PR + ++ L +++ N L +D F
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 375 CTNLSELVLVNNRISG----------------------SIPEYISEL------------- 399
T+L L L +NR++ +IP + EL
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223
Query: 400 ---PLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSS 456
L +L LQ+NN T L N L+E + + N LE + LE L +S+
Sbjct: 224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 457 NMLT-----GQ-IPK-KIGNLTNIQILKLNSN 481
N L GQ IP K+ +L++ +L + N
Sbjct: 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 313
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 5/181 (2%)
Query: 238 LYLGINQFTGSIPAELGNCRNLKAVVLSLNALS---GSLPEQLAELQIFTFSAGMNQLSG 294
++L N+ + A CRNL + L N L+ + LA L+ S QL
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRS 95
Query: 295 PLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSL 354
P+ ++ +L L P + L+ + L +N L D G+L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 355 VEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISEL-PLKVLDLQYNNFTG 413
+ L GN +S E F +L L+L NR++ P +L L L L NN +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 414 V 414
+
Sbjct: 216 L 216
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 202 VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKA 261
+F +L L L ++NN L+ +L +L LYLG NQ LK
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 262 VVLSLNALSGSLP----EQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316
+ L+ N L S+P ++L LQ T S NQL + ++ ++ L+ NQF
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 23/128 (17%)
Query: 354 LVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTG 413
L +NLD N L VFD T L L L NN+ ++ LPL V D
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ--------LASLPLGVFD-------- 104
Query: 414 VIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNI 473
+ L + N L+ S L+EL L++N L LTN+
Sbjct: 105 -------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 474 QILKLNSN 481
Q L L++N
Sbjct: 158 QTLSLSTN 165
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 201 PVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPA-ELGNCRNL 259
P+ +F +L L L + N L L KL +L L NQ SIPA NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157
Query: 260 KAVVLSLNALSGSLP----EQLAELQIFTFSAGMNQLSGPLPSWLGKW 303
+ + LS N L S+P ++L +LQ T S +L +W
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 309 LWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDS-GSLVEINLDGNMLSGT 367
LWL NNQ P + L+ + ++NKL+ IP + D L +++L+ N L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 368 IEDVFDRCTNLSELVLVNN 386
FD +L+ + L NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 202 VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKA 261
+F +L L L ++NN L+ +L +L LYLG NQ LK
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 262 VVLSLNALSGSLP----EQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316
+ L+ N L S+P ++L LQ T S NQL + ++ ++ L+ NQF
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 23/128 (17%)
Query: 354 LVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTG 413
L +NLD N L VFD T L L L NN+ ++ LPL V D
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ--------LASLPLGVFD-------- 104
Query: 414 VIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNI 473
+ L + N L+ S L+EL L++N L LTN+
Sbjct: 105 -------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 474 QILKLNSN 481
Q L L++N
Sbjct: 158 QTLSLSTN 165
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 201 PVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPA-ELGNCRNL 259
P+ +F +L L L + N L L KL +L L NQ SIPA NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157
Query: 260 KAVVLSLNALSGSLP----EQLAELQIFTFSAGMNQLSGPLPSWLGKW 303
+ + LS N L S+P ++L +LQ T S +L +W
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQW 204
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 115/283 (40%), Gaps = 44/283 (15%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 268 ALSGSLP-EQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326
++ P + L L S+ N +S S L + L +NQ P + N
Sbjct: 118 QITDIDPLKNLTNLNRLELSS--NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
+ L+ + +S+NK+S V + TNL L+ NN
Sbjct: 172 LTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATNN 205
Query: 387 RISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNA 446
+IS P I L L L N + +L + NL + + A+N + +
Sbjct: 206 QISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGL 260
Query: 447 VALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 261 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 301
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 115/283 (40%), Gaps = 44/283 (15%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 268 ALSGSLP-EQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326
++ P + L L S+ N +S S L + L +NQ P + N
Sbjct: 118 QITDIDPLKNLTNLNRLELSS--NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
+ L+ + +S+NK+S V + TNL L+ NN
Sbjct: 172 LTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATNN 205
Query: 387 RISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNA 446
+IS P I L L L N + +L + NL + + A+N + +
Sbjct: 206 QISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGL 260
Query: 447 VALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 261 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 301
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 50/212 (23%)
Query: 317 VGRIPPEI-GNCSMLKCISLSNNKLSGPIPREL-CDSGSLVEINLDGNMLSGTIEDVFDR 374
+ +PP + N +L + L N LS +PR + ++ L +++ N L +D F
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 375 CTNLSELVLVNNRISG----------------------SIPEYISEL------------- 399
T+L L L +NR++ +IP + EL
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229
Query: 400 ---PLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSS 456
L +L LQ+NN T L N L+E + + N LE + LE L +S+
Sbjct: 230 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 457 NMLT-----GQ-IPK-KIGNLTNIQILKLNSN 481
N L GQ IP K+ +L++ +L + N
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 319
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 115/283 (40%), Gaps = 44/283 (15%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 268 ALSGSLP-EQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326
++ P + L L S+ N +S S L + L +NQ P + N
Sbjct: 118 QITDIDPLKNLTNLNRLELSS--NTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
+ L+ + +S+NK+S V + TNL L+ NN
Sbjct: 172 LTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIATNN 205
Query: 387 RISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNA 446
+IS P I L L L N + +L + NL + + A+N + +
Sbjct: 206 QISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGL 260
Query: 447 VALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 261 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 301
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 306 MDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLS 365
+++LW+ +N+ L + L N+L PR L ++L N L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 366 GTIEDVFDRCTNLSELVLVNNRISGSIPE--YISELPLKVLDLQYNNFTGV 414
+ VFD+ T+L EL L NN++ +PE + LK L L N V
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 66/178 (37%), Gaps = 9/178 (5%)
Query: 214 LDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPA----ELGNCRNLKAVVLSLNAL 269
LD+ +N LS L KL LYL N+ ++PA EL N L L AL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 270 SGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSM 329
+ +QL L NQL P ++ L L N+ +
Sbjct: 101 PIGVFDQLVNLAELRLD--RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 330 LKCISLSNNKLSGPIPRELCDS-GSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
LK + L NN+L +P D L + LD N L E FD L L L N
Sbjct: 159 LKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 33/187 (17%)
Query: 202 VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKA 261
VS LQS+ LD+++ ++ P + L L LYL +NQ T P L NL+
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155
Query: 262 VVLSLNALSGSLPEQLAEL-QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRI 320
+ + +S P LA L ++ T A N++S P L + + L NNQ
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211
Query: 321 PPEIGNCSMLKCISLSNNKLS---------------------GPI-PRELCDSGSLVEIN 358
P + N S L ++L+N ++ PI P + D+G+ N
Sbjct: 212 P--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPN 269
Query: 359 LDGNMLS 365
L N+ S
Sbjct: 270 LTWNLTS 276
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 53/287 (18%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 268 ALSGSLP-EQLAELQIFTFSAG----MNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPP 322
++ P + L L S+ ++ LSG L Q++ + NQ P
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSG-----LTSLQQLN----FGNQVTDLKP- 167
Query: 323 EIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382
+ N + L+ + +S+NK+S V + TNL L+
Sbjct: 168 -LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 200
Query: 383 LVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWE 442
NN+IS P I L L L N + +L + NL + + A+N +
Sbjct: 201 ATNNQISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAP 255
Query: 443 IGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
+ L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 256 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 53/287 (18%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 268 ALSGSLP-EQLAELQIFTFSAG----MNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPP 322
++ P + L L S+ ++ LSG L Q++ + NQ P
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSG-----LTSLQQLN----FGNQVTDLKP- 167
Query: 323 EIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382
+ N + L+ + +S+NK+S V + TNL L+
Sbjct: 168 -LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 200
Query: 383 LVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWE 442
NN+IS P I L L L N + +L + NL + + A+N +
Sbjct: 201 ATNNQISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAP 255
Query: 443 IGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
+ L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 256 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 33/290 (11%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L YL+++ N ++ +I P + NL KL++LY+G N+ T + L N NL+ + L+ +
Sbjct: 65 LTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 268 ALSGSLPEQLAEL-QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326
+S P LA L + ++ + G N L S L ++ L + ++ P I N
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTP--IAN 175
Query: 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFD-----RCTNLSEL 381
+ L +SL+ N++ P SL + + + + + D T L+ L
Sbjct: 176 LTDLYSLSLNYNQIEDISPL-----ASLTSL----HYFTAYVNQITDITPVANXTRLNSL 226
Query: 382 VLVNNRISGSIP-EYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSL 439
+ NN+I+ P +S+L L++ Q ++ V ++ L N SN + S
Sbjct: 227 KIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLT-----KLKXLNVGSN--QISD 279
Query: 440 SWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
+ N L L L++N L + + IG LTN+ L L+ N I P+
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 116/287 (40%), Gaps = 53/287 (18%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 268 ALSGSLP-EQLAELQIFTFSAG----MNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPP 322
++ P + L L S+ ++ LSG L Q+ + NQ P
Sbjct: 123 QITDIDPLKNLTNLNRLELSSNTISDISALSG-----LTSLQQLS----FGNQVTDLKP- 172
Query: 323 EIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382
+ N + L+ + +S+NK+S V + TNL L+
Sbjct: 173 -LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 205
Query: 383 LVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWE 442
NN+IS P I L L L N + +L + NL + + A+N +
Sbjct: 206 ATNNQISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAP 260
Query: 443 IGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
+ L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 305
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 116/287 (40%), Gaps = 53/287 (18%)
Query: 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267
L +L+ ++ SNN L+ P + NL KL D+ + NQ P L N NL + L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 268 ALSGSLP-EQLAELQIFTFSAG----MNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPP 322
++ P + L L S+ ++ LSG L Q+ + NQ P
Sbjct: 122 QITDIDPLKNLTNLNRLELSSNTISDISALSG-----LTSLQQLS----FGNQVTDLKP- 171
Query: 323 EIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382
+ N + L+ + +S+NK+S V + TNL L+
Sbjct: 172 -LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 204
Query: 383 LVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWE 442
NN+IS P I L L L N + +L + NL + + A+N +
Sbjct: 205 ATNNQISDITPLGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAP 259
Query: 443 IGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPM 489
+ L EL L +N ++ P + LT + L+LN N + I P+
Sbjct: 260 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 304
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 212 SYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS- 270
+ LD+ NN ++ + NLK L L L N+ + P L+ + LS N L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 271 --GSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNN--QFVGRIPPEIGN 326
+P+ L EL++ N+++ S NQM + L N + G
Sbjct: 115 LPEKMPKTLQELRVHE-----NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
L I +++ ++ IP+ L SL E++LDGN ++ NL++L L N
Sbjct: 170 MKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 387 RISG 390
IS
Sbjct: 227 SISA 230
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 212 SYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS- 270
+ LD+ NN ++ + NLK L L L N+ + P L+ + LS N L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 271 --GSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNN--QFVGRIPPEIGN 326
+P+ L EL++ N+++ S NQM + L N + G
Sbjct: 115 LPEKMPKTLQELRVHE-----NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
L I +++ ++ IP+ L SL E++LDGN ++ NL++L L N
Sbjct: 170 MKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 387 RISG 390
IS
Sbjct: 227 SISA 230
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 367 TIED-VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENL 425
TIED + ++LS L+L N I L F+G+ +L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQS---------------LALGAFSGL--------SSL 104
Query: 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSNFFD 484
+ A L ++ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 485 GI 486
I
Sbjct: 165 SI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 367 TIED-VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENL 425
TIED + ++LS L+L N I L F+G+ +L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQS---------------LALGAFSGL--------SSL 103
Query: 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSNFFD 484
+ A L ++ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 485 GI 486
I
Sbjct: 164 SI 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 367 TIED-VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENL 425
TIED + ++LS L+L N I L F+G+ +L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQS---------------LALGAFSGL--------SSL 103
Query: 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSNFFD 484
+ A L ++ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 485 GI 486
I
Sbjct: 164 SI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 367 TIED-VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENL 425
TIED + ++LS L+L N I L F+G+ +L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQS---------------LALGAFSGL--------SSL 102
Query: 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSNFFD 484
+ A L ++ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 485 GI 486
I
Sbjct: 163 SI 164
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQ-YNNF 411
SL +NL N L VFD+ T L EL L N++ S+P+ + + ++ DL+ Y N
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135
Query: 412 TGVIPVSLWNSENLMEF 428
+P +++ +++
Sbjct: 136 LKSVPDGVFDRLTSLQY 152
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 201 PVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIP----AELGNC 256
P +F L SL+YL++S N L L +L +L L NQ S+P +L
Sbjct: 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQL 126
Query: 257 RNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316
++L+ L ++ + ++L LQ + P +L +W S + N+
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS-- 184
Query: 317 VGRIPPEIGNCS 328
G + P+ CS
Sbjct: 185 AGSVAPDSAKCS 196
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 367 TIED-VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENL 425
TIED + ++LS L+L N I L F+G+ +L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQS---------------LALGAFSGL--------SSL 104
Query: 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSNFFD 484
+ A L ++ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 485 GI 486
I
Sbjct: 165 SI 166
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 27/190 (14%)
Query: 238 LYLGINQFTGSIPAELGNCRNLKAVVLSLNALSG---------SLPEQL-----AELQIF 283
++L N+ + A +CRNL + L NAL+G +L EQL A+L++
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 284 TFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGP 343
P+ + +L L P + L+ + L +N L
Sbjct: 96 D------------PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQAL 143
Query: 344 IPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISEL-PLK 402
D G+L + L GN + E F +L L+L N ++ P +L L
Sbjct: 144 PDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLM 203
Query: 403 VLDLQYNNFT 412
L L NN +
Sbjct: 204 TLYLFANNLS 213
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 64/179 (35%), Gaps = 2/179 (1%)
Query: 356 EINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGV 414
I L GN +S F C NL+ L L +N ++G + L L+ LDL N V
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 415 I-PVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNI 473
+ P + +L + L+ AL+ L L N L +L N+
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 474 QILKLNSNFFDGIIPMEFGDCISXXXXXXXXXXXXXSIPEKIADLTQLQFLDLSHNNLS 532
L L+ N + F S P DL +L L L NNLS
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 441 WEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSN 481
+ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 441 WEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSN 481
+ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 441 WEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNSN 481
+ IG+ L+EL+++ N++ ++P+ NLTN++ L L+SN
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 203 SLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGS-IPAELGNCRNLKA 261
S+F +L++L YLD+S+ L L L + N F + +P RNL
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 262 VVLS---LNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNN 314
+ LS L LS + L+ LQ+ ++ NQL + + +WL+ N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMAS--NQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 238 LYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLP----EQLAELQIFTFSAGMNQLS 293
LYL NQ T P + NLK + L N L G+LP + L +L + G NQL+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL--GTNQLT 101
Query: 294 GPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGS 353
LPS + D L LK + + NKL+ +PR +
Sbjct: 102 -VLPSAV-----FDRL------------------VHLKELFMCCNKLT-ELPRGIERLTH 136
Query: 354 LVEINLDGNMLSGTIEDVFDRCTNLSELVLVNN 386
L + LD N L FDR ++L+ L N
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 309 LWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTI 368
L+L NQF +P E+ N L I LSNN++S + + L+ + L N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 369 EDVFDRCTNLSELVLVNNRISGSIPE 394
FD +L L L N IS +PE
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS-VVPE 119
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 344 IPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LK 402
+P+EL + L I+L N +S F T L L+L NR+ P L L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 403 VLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS 438
+L L N+ + V+P +N + +A S+L G+
Sbjct: 106 LLSLHGNDIS-VVPEGAFN-----DLSALSHLAIGA 135
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 309 LWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDS-GSLVEINLDGNMLSGT 367
L+LY+NQ P + L + L NN+L+ +P + D L +++L+ N L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 368 IEDVFDRCTNLSELVLVNN 386
FD +L+ + L+NN
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 309 LWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDS-GSLVEINLDGNMLSGT 367
L+LY+NQ P + L + L NN+L+ +P + D L +++L+ N L
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 368 IEDVFDRCTNLSELVLVNN 386
FD +L+ + L+NN
Sbjct: 102 PRGAFDNLKSLTHIWLLNN 120
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 202 VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKA 261
VS LQS+ LD+++ ++ P + L L LYL +NQ T P L NL+
Sbjct: 106 VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 161
Query: 262 VVLSLNALSGSLPEQLAEL-QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRI 320
+ + N ++ P LA L ++ T A N++S P L + + L +NQ
Sbjct: 162 LSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVS 217
Query: 321 PPEIGNCSMLKCISLS 336
P + N S L ++L+
Sbjct: 218 P--LANLSNLFIVTLT 231
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 272 SLPEQLAELQIFTFSA--GMNQLSGPLPSWLGKWNQMDSLWLYNNQF------------- 316
SLP++L L IF+ + ++SG W + +SLW ++F
Sbjct: 11 SLPDELL-LGIFSCLCLPELLKVSGVCKRWY-RLASDESLWQTLDEFRVQHMDLSNSVIE 68
Query: 317 VGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSG----TIEDVF 372
V + + CS L+ +SL +LS PI L + +LV +NL G SG ++ +
Sbjct: 69 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQTLL 126
Query: 373 DRCTNLSEL 381
C+ L EL
Sbjct: 127 SSCSRLDEL 135
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 324 IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSG----TIEDVFDRCTNLS 379
+ CS L+ +SL +LS PI L + +LV +NL G SG ++ + C+ L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQTLLSSCSRLD 171
Query: 380 EL 381
EL
Sbjct: 172 EL 173
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLT 460
LKVL+L YN + + + +NL N + NLL S + +DL N +
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 461 GQIPKKIGNLTNIQILKLNSN 481
+ L +Q L L N
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDN 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,530,848
Number of Sequences: 62578
Number of extensions: 555966
Number of successful extensions: 1934
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 435
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)