Query 048302
Match_columns 545
No_of_seqs 451 out of 4094
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.7E-65 1.7E-69 566.2 40.4 512 24-538 27-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.9E-57 1.1E-61 503.5 34.8 464 65-530 94-605 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.9E-42 4E-47 316.3 -12.7 449 66-532 47-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 6.2E-39 1.3E-43 306.1 8.2 387 90-526 54-446 (873)
5 KOG4194 Membrane glycoprotein 100.0 4.8E-39 1E-43 306.9 5.6 366 88-479 78-447 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 5.4E-40 1.2E-44 300.2 -16.6 441 85-542 42-527 (565)
7 KOG0444 Cytoskeletal regulator 100.0 8.8E-36 1.9E-40 286.7 -5.2 364 65-484 8-375 (1255)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-35 5.5E-40 295.9 -7.1 417 90-530 47-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.4E-39 279.1 -4.5 398 86-540 5-412 (1255)
10 KOG0618 Serine/threonine phosp 100.0 3E-34 6.6E-39 288.2 -8.3 442 70-533 4-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.6E-24 7.7E-29 239.8 26.7 338 107-458 553-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 6.3E-24 1.4E-28 237.8 26.8 356 65-435 533-905 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.9E-26 6.2E-31 210.2 -5.3 412 89-529 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 7.4E-26 1.6E-30 207.5 -4.2 379 138-532 69-477 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 5.7E-21 1.2E-25 199.0 15.6 264 185-515 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.8E-20 1E-24 192.2 18.5 261 113-440 202-462 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.3E-24 190.9 19.8 228 23-270 60-317 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.9E-19 1.5E-23 184.7 11.2 99 377-484 326-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 5.3E-20 1.2E-24 179.8 0.5 283 213-531 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.9E-20 6.2E-25 181.7 -2.8 42 156-197 77-121 (319)
21 KOG0617 Ras suppressor protein 99.7 2.2E-19 4.7E-24 146.6 -4.6 182 83-271 28-213 (264)
22 KOG0617 Ras suppressor protein 99.7 9.1E-19 2E-23 143.0 -6.2 167 108-281 29-196 (264)
23 PLN03150 hypothetical protein; 99.5 8.4E-14 1.8E-18 146.1 13.3 144 24-170 370-525 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 8.7E-14 1.9E-18 134.6 -5.3 194 328-530 75-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.2 4.5E-13 9.8E-18 129.8 -4.6 174 87-270 74-247 (722)
26 KOG1909 Ran GTPase-activating 99.2 3.1E-12 6.7E-17 117.1 0.6 232 300-531 26-310 (382)
27 KOG4658 Apoptotic ATPase [Sign 99.2 1.3E-11 2.8E-16 132.4 4.6 200 65-270 524-730 (889)
28 KOG1259 Nischarin, modulator o 99.2 6.9E-12 1.5E-16 112.3 1.9 127 401-533 286-413 (490)
29 COG4886 Leucine-rich repeat (L 99.2 3.6E-11 7.9E-16 120.8 7.4 148 116-270 97-245 (394)
30 PLN03150 hypothetical protein; 99.2 6.7E-11 1.4E-15 124.4 8.9 112 425-536 420-532 (623)
31 COG4886 Leucine-rich repeat (L 99.2 6.5E-11 1.4E-15 119.0 8.4 123 140-268 97-220 (394)
32 KOG1909 Ran GTPase-activating 99.1 2.4E-12 5.1E-17 117.8 -3.3 138 351-507 156-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.6E-16 103.4 3.6 37 135-173 41-77 (175)
34 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 116.2 0.5 208 301-508 118-339 (505)
35 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 100.6 5.8 102 422-526 41-147 (175)
36 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 115.7 -0.4 161 109-270 118-284 (505)
37 KOG1259 Nischarin, modulator o 99.1 3.3E-11 7.2E-16 107.9 1.5 203 296-509 206-413 (490)
38 KOG4658 Apoptotic ATPase [Sign 99.0 9.3E-11 2E-15 125.9 3.6 267 65-360 546-827 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.3E-14 76.6 3.2 59 448-506 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.4E-14 76.5 3.0 61 471-531 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.9 3.7E-10 8E-15 113.7 -0.5 150 87-246 71-221 (414)
42 KOG0531 Protein phosphatase 1, 98.8 5.2E-10 1.1E-14 112.6 -1.6 225 300-536 91-322 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 4.1E-10 8.9E-15 101.0 -6.6 178 305-505 186-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.6 2.6E-09 5.7E-14 106.9 -4.5 196 328-532 84-292 (1096)
45 KOG1859 Leucine-rich repeat pr 98.4 3.6E-09 7.7E-14 106.0 -7.6 156 81-246 102-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.4 4.4E-09 9.6E-14 94.5 -6.6 178 329-530 186-374 (419)
47 PF08263 LRRNT_2: Leucine rich 98.4 5.1E-07 1.1E-11 58.1 4.5 38 25-62 2-43 (43)
48 KOG4579 Leucine-rich repeat (L 98.4 2.1E-08 4.5E-13 79.7 -2.4 136 401-540 29-167 (177)
49 KOG2982 Uncharacterized conser 98.4 3.7E-08 8E-13 88.7 -2.1 85 135-219 70-156 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 2.2E-07 4.7E-12 82.8 0.9 231 301-532 27-316 (388)
51 KOG2982 Uncharacterized conser 98.2 2.8E-07 6E-12 83.2 -0.1 182 304-485 71-263 (418)
52 KOG4579 Leucine-rich repeat (L 98.0 2E-07 4.4E-12 74.2 -3.8 81 186-269 55-135 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.0 2.9E-06 6.3E-11 75.7 1.7 187 86-273 28-258 (388)
54 PF12799 LRR_4: Leucine Rich r 97.9 8.6E-06 1.9E-10 52.4 3.2 36 448-484 2-37 (44)
55 KOG1644 U2-associated snRNP A' 97.9 2.9E-05 6.2E-10 66.6 5.8 57 114-172 44-100 (233)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.5E-10 51.2 3.0 34 138-172 3-36 (44)
57 KOG3665 ZYG-1-like serine/thre 97.8 6E-06 1.3E-10 87.1 0.1 36 134-171 171-206 (699)
58 KOG1644 U2-associated snRNP A' 97.7 6.9E-05 1.5E-09 64.3 5.6 103 401-505 44-150 (233)
59 PRK15386 type III secretion pr 97.7 9.4E-05 2E-09 72.0 7.1 136 348-506 48-188 (426)
60 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 70.6 8.3 146 372-539 48-203 (426)
61 PF13306 LRR_5: Leucine rich r 97.5 0.00038 8.2E-09 57.6 7.5 83 108-193 8-90 (129)
62 KOG3665 ZYG-1-like serine/thre 97.5 2.8E-05 6E-10 82.2 0.7 150 65-216 123-282 (699)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00047 1E-08 57.0 7.7 124 82-212 6-129 (129)
64 KOG2123 Uncharacterized conser 97.4 6.5E-06 1.4E-10 73.8 -4.4 100 422-525 18-123 (388)
65 KOG4341 F-box protein containi 97.4 3.5E-06 7.7E-11 79.8 -6.8 82 444-525 369-458 (483)
66 KOG4341 F-box protein containi 97.4 4.6E-06 1E-10 79.0 -6.3 131 401-531 296-438 (483)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00033 7.2E-09 62.9 2.5 39 158-196 63-103 (260)
68 KOG2739 Leucine-rich acidic nu 96.9 0.00067 1.5E-08 60.9 2.7 114 415-530 35-154 (260)
69 KOG2123 Uncharacterized conser 96.8 5.1E-05 1.1E-09 68.3 -5.1 56 113-172 20-75 (388)
70 KOG1947 Leucine rich repeat pr 96.3 0.00025 5.4E-09 73.5 -4.4 16 300-315 358-373 (482)
71 KOG1947 Leucine rich repeat pr 96.1 0.00038 8.2E-09 72.2 -4.2 88 300-387 210-306 (482)
72 KOG4308 LRR-containing protein 95.3 0.0001 2.2E-09 74.5 -11.9 184 330-532 89-303 (478)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 31.5 0.9 21 472-493 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 93.0 0.047 1E-06 26.9 0.8 13 520-532 2-14 (17)
75 KOG0473 Leucine-rich repeat pr 91.8 0.0025 5.4E-08 56.1 -7.8 86 109-197 39-124 (326)
76 KOG3864 Uncharacterized conser 91.7 0.028 6.2E-07 48.7 -1.5 33 138-170 103-135 (221)
77 KOG3864 Uncharacterized conser 90.5 0.05 1.1E-06 47.2 -1.2 83 424-506 102-187 (221)
78 smart00369 LRR_TYP Leucine-ric 90.0 0.33 7.1E-06 26.9 2.3 21 184-205 2-22 (26)
79 smart00370 LRR Leucine-rich re 90.0 0.33 7.1E-06 26.9 2.3 21 184-205 2-22 (26)
80 smart00370 LRR Leucine-rich re 88.8 0.31 6.7E-06 27.0 1.6 19 519-538 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 88.8 0.31 6.7E-06 27.0 1.6 19 519-538 2-20 (26)
82 KOG4308 LRR-containing protein 88.6 0.0035 7.5E-08 63.6 -11.3 185 90-274 89-307 (478)
83 PF13516 LRR_6: Leucine Rich r 87.6 0.17 3.7E-06 27.4 0.0 13 496-508 3-15 (24)
84 KOG0473 Leucine-rich repeat pr 86.7 0.022 4.8E-07 50.4 -5.8 83 422-507 41-123 (326)
85 smart00364 LRR_BAC Leucine-ric 74.9 2.1 4.6E-05 23.7 1.4 18 519-537 2-19 (26)
86 KOG4242 Predicted myosin-I-bin 74.5 14 0.00031 36.9 7.7 71 208-280 164-237 (553)
87 smart00368 LRR_RI Leucine rich 68.8 3.8 8.3E-05 23.1 1.6 14 471-484 2-15 (28)
88 KOG3763 mRNA export factor TAP 68.0 2.4 5.2E-05 43.0 1.0 64 445-510 216-285 (585)
89 smart00365 LRR_SD22 Leucine-ri 64.9 5.9 0.00013 22.0 1.7 14 495-508 2-15 (26)
90 smart00367 LRR_CC Leucine-rich 45.7 16 0.00034 20.0 1.5 13 518-530 1-13 (26)
91 KOG3763 mRNA export factor TAP 44.5 12 0.00027 38.1 1.5 68 468-535 215-286 (585)
92 KOG4242 Predicted myosin-I-bin 42.9 27 0.00059 35.0 3.5 197 327-527 164-388 (553)
93 PF13956 Ibs_toxin: Toxin Ibs, 25.1 43 0.00094 16.6 0.9 9 1-9 1-9 (19)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.7e-65 Score=566.16 Aligned_cols=512 Identities=35% Similarity=0.639 Sum_probs=326.1
Q ss_pred CHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCccccceeecCC-cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCC
Q 048302 24 PKQERRSLVHFKNSLQNP-QVLSGWNKTTRHCDWFGVKCRHS-RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLF 101 (545)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~-~~~~~w~~~~~~c~w~~~~c~~~-~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~ 101 (545)
++.|+.+|++||+++.+| ..+.+|+...+||.|.|+.|+.. +|+.++++++.+.+.+++.+..+++|++|++++|.+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 457899999999999877 56789988889999999999854 9999999999999998989999999999999999998
Q ss_pred ccCCcccC-CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCccc
Q 048302 102 GQLSPQVS-NLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRL 180 (545)
Q Consensus 102 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 180 (545)
+.+|..+. .+++|++|++++|.+.+.+|. +.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 87776654 777888888877777655553 345555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCC
Q 048302 181 GDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLK 260 (545)
Q Consensus 181 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 260 (545)
+++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 555555555555555554444 3445555555555555555555555555555555555555555444444444455555
Q ss_pred EEEccCCcCcccChhhhcccc-------------------------ccEEEccCCCCCCCCccccCCCCCCCEEEccCCc
Q 048302 261 AVVLSLNALSGSLPEQLAELQ-------------------------IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQ 315 (545)
Q Consensus 261 ~L~l~~n~~~~~~~~~l~~l~-------------------------l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 315 (545)
+|++++|.+.+..|..+..+. ++.++++.|.+.+..|.++..+++|+.|++++|.
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 555555444444444444433 4444444444444444444444444444444444
Q ss_pred ceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCcc
Q 048302 316 FVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEY 395 (545)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 395 (545)
+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 44444444444445555555555544444444444444444444444444444445555666666666666666555555
Q ss_pred ccCcc-ccEEEccCCcceeecChhhhcC-----------------------CCCCeEeccCccCcccCChhhhccCCCCE
Q 048302 396 ISELP-LKVLDLQYNNFTGVIPVSLWNS-----------------------ENLMEFNAASNLLEGSLSWEIGNAVALEE 451 (545)
Q Consensus 396 ~~~~~-L~~L~l~~n~l~~~~~~~~~~~-----------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 451 (545)
+..++ ++.|++++|.+.+.++..++.+ ++|+.|++++|++.+..|..+.++++|++
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCE
Confidence 55444 5555555555555444444333 34555555555555666666667777777
Q ss_pred EEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcc
Q 048302 452 LDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 452 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 531 (545)
|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|++++|++++.+|..+..+++|+.+++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 77777777777777777777777777777777777777777777778888887777777777777777788888888888
Q ss_pred cccCCCC
Q 048302 532 SGPIPSK 538 (545)
Q Consensus 532 ~~~ip~~ 538 (545)
.|.+|+.
T Consensus 584 ~~~~p~~ 590 (968)
T PLN00113 584 HGSLPST 590 (968)
T ss_pred eeeCCCc
Confidence 7777753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.9e-57 Score=503.51 Aligned_cols=464 Identities=34% Similarity=0.543 Sum_probs=346.6
Q ss_pred cEEEEEeCCCCCccccCccCC-CCCCCCEEECCCC----------------------CCCccCCcccCCCCCCCEEeCCC
Q 048302 65 RVVSLVIQTQSLKGPVSPFLY-NLSSLRILDLSKN----------------------LLFGQLSPQVSNLKRLKMLSLGE 121 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~-~l~~L~~L~ls~~----------------------~~~~~~~~~~~~l~~L~~L~L~~ 121 (545)
+++.++++++.+.+.+|..+. .+++|++|++++| .+.+.+|..++++++|++|++++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 667777777777666665433 4455555555444 44445555666677777777777
Q ss_pred CcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccC
Q 048302 122 NQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLP 201 (545)
Q Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 201 (545)
|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 77666667777777777777777777766667777777777777777777766677777777777777777777766666
Q ss_pred hhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc
Q 048302 202 VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ 281 (545)
Q Consensus 202 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 281 (545)
..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+.
T Consensus 254 -~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 254 -SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred -hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence 5566777777777777777766777777777777777777777767777777777777777777777777777666665
Q ss_pred -ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCC------------------------CCCCCCEEEcc
Q 048302 282 -IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIG------------------------NCSMLKCISLS 336 (545)
Q Consensus 282 -l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~------------------------~~~~L~~L~ls 336 (545)
++.++++.|.+.+.+|.++..+++|+.|++++|++.+..|..+. .+++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 77777777777777777777777777777777766655554444 45555555555
Q ss_pred cCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecC
Q 048302 337 NNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIP 416 (545)
Q Consensus 337 ~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 416 (545)
+|.+++..|..+..++.|+.+++++|.+.+..+..+..+++|+.|++++|++.+.+|..+....|+.|++++|++.+.+|
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC
Confidence 55555555555666666666666666666666655666777777777777777777766655458999999999999999
Q ss_pred hhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCC
Q 048302 417 VSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCIS 496 (545)
Q Consensus 417 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 496 (545)
..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|++++.+|..+..+++|++|+|++|++++.+|..+.++++
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCcccccccccccCCCCCCeeeCCCCc
Q 048302 497 LNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNN 530 (545)
Q Consensus 497 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 530 (545)
|++|++++|++.+.+|.. ..+..+......+|+
T Consensus 573 L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 573 LVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred cCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999864 344556666677887
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=316.31 Aligned_cols=449 Identities=28% Similarity=0.465 Sum_probs=368.2
Q ss_pred EEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccc
Q 048302 66 VVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRS 145 (545)
Q Consensus 66 v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (545)
...+.++.+.+. .+.+.+.++..+.+|++++|++. ..|.+++.+..++.++.++|.+. ++|+.++.+.+|+.+++++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 345566666655 45667888999999999999974 67888999999999999999997 8899999999999999999
Q ss_pred ccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccC
Q 048302 146 NSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNI 225 (545)
Q Consensus 146 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 225 (545)
|.+. .+|+.++.+..|..++..+|++. ..|+.+.++.+|..+++.+|.+. .+|...+. ++.|++||...|.++ .+
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 9988 77888999999999999999998 67888999999999999999998 67756655 899999999998887 78
Q ss_pred CccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCC
Q 048302 226 PPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWN 304 (545)
Q Consensus 226 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~ 304 (545)
|..++.+.+|..|++..|++. ..| .|..|..|+++.++.|.+.-...+...++. +..+|+.+|++. .+|+.+..+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 899999999999999999998 666 688999999999999988743334455666 888888888887 4677777888
Q ss_pred CCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCC--------------------------------------c
Q 048302 305 QMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIP--------------------------------------R 346 (545)
Q Consensus 305 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------------------------------------~ 346 (545)
+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+..+-. .
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 8999999999988 677788888 88888888887642100 0
Q ss_pred ---cccCCCCCcEEECcCCcCcccccccccCCC--CCCEEEcccCeeeeccCccccCcc--ccEEEccCCcceeecChhh
Q 048302 347 ---ELCDSGSLVEINLDGNMLSGTIEDVFDRCT--NLSELVLVNNRISGSIPEYISELP--LKVLDLQYNNFTGVIPVSL 419 (545)
Q Consensus 347 ---~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~ 419 (545)
.....-+.+.|++++-+++.++.+.|..-. -.+.++++.|++. ++|..+..+. +..+.+++|.+. -+|..+
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 001123456677777777766666665432 2677888888887 6777666665 556666666665 678888
Q ss_pred hcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCE
Q 048302 420 WNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNT 499 (545)
Q Consensus 420 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 499 (545)
+.+++|..|++++|.+. .+|..+..+..|+.|+++.|++. .+|.++.-+..|+.+-.++|++....|..+.++.+|..
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 99999999999999887 67888888999999999999998 78888888888888888899998777777999999999
Q ss_pred EeCCCCcccccccccccCCCCCCeeeCCCCccc
Q 048302 500 LDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 500 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 532 (545)
||+.+|.+. .+|..+++|++|++|++.||+|+
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999 89999999999999999999999
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-39 Score=306.11 Aligned_cols=387 Identities=24% Similarity=0.249 Sum_probs=205.2
Q ss_pred CCEEECCCCCCCccCCcccCCC--CCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 90 LRILDLSKNLLFGQLSPQVSNL--KRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 90 L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
-+.|+.+++.+...-...+..+ +.-+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3556777666533211112211 23345677777666666666666667777766666666 55665555556666666
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG 247 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 247 (545)
.+|.|...-.+.++.++.|+.||++.|.++ .++...|..-.++++|++++|.|+..-...|..+.+|..|.|+.|.++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 666666555555666666666666666666 5555555555566666666666665555555555566666666666654
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCC
Q 048302 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNC 327 (545)
Q Consensus 248 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 327 (545)
..+..|.+++.|+.|++..|++. ..---.|.++
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~ir-----------------------------------------------ive~ltFqgL 244 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIR-----------------------------------------------IVEGLTFQGL 244 (873)
T ss_pred cCHHHhhhcchhhhhhcccccee-----------------------------------------------eehhhhhcCc
Confidence 44444555556666655555543 1111234444
Q ss_pred CCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEc
Q 048302 328 SMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDL 406 (545)
Q Consensus 328 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l 406 (545)
++|+.|.+..|.+.......|..+.++++|+|..|++.......+-+++.|++|++++|.+...-+..+...+ |++|+|
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 4444444444444444444444444555555555544444444444445555555555554444444444444 555555
Q ss_pred cCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccc---cccccccCCCCEEeCCCccc
Q 048302 407 QYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQI---PKKIGNLTNIQILKLNSNFF 483 (545)
Q Consensus 407 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l 483 (545)
+.|+++...+..|..+..|++|++++|.+...-...|..+.+|++|||++|.++..+ ...|.++++|+.|++-+|++
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 555555444445555555555555555544333334444555555555555544322 22344555555555555555
Q ss_pred cccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeC
Q 048302 484 DGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDL 526 (545)
Q Consensus 484 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 526 (545)
..+....|.++.+||.|||.+|.|...-|++|..+ .|++|.+
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 54444455555555555555555554445555444 4444443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-39 Score=306.88 Aligned_cols=366 Identities=24% Similarity=0.240 Sum_probs=282.2
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
...+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|...-.+.++.++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45788999999999888889999999999999999998 88988888888999999999999888888999999999999
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG 247 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 247 (545)
+.|.++..--..|..-.++++|++++|+|+ .+....|..+.+|..|.+++|+++...+..|.++++|+.|+|..|++.-
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 999998655556777789999999999998 6777889999999999999999996666788889999999999999984
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCC
Q 048302 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNC 327 (545)
Q Consensus 248 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 327 (545)
..-..|..+++|+.|.+..|.+..- -...|..+.++++|+|+.|++...-..++.++
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL-----------------------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKL-----------------------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccc-----------------------cCcceeeecccceeecccchhhhhhccccccc
Confidence 4456788999999999998887621 12235566778888888888776666677778
Q ss_pred CCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEc
Q 048302 328 SMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDL 406 (545)
Q Consensus 328 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l 406 (545)
++|+.|++|+|.|...-++....+++|++|+|++|+++...++.|..+..|++|++++|.+...-...|..++ |+.|+|
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 8888888888887777777777777788888888877777777777777777777777777655444555555 666666
Q ss_pred cCCcceeecCh---hhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCC
Q 048302 407 QYNNFTGVIPV---SLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLN 479 (545)
Q Consensus 407 ~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 479 (545)
++|.+...+-+ .|.+++.|+.|.+.+|++....-.+|..++.|++|||.+|.|...-+.+|..+ .|++|-+.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 66666544332 24555566666666666554444555556666666666665555555555555 55555544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.4e-40 Score=300.22 Aligned_cols=441 Identities=28% Similarity=0.402 Sum_probs=370.6
Q ss_pred CCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCE
Q 048302 85 YNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKS 164 (545)
Q Consensus 85 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 164 (545)
..-..++.+.+++|.+. .+.+.+.++..|.++++.+|.+. ..|.+++.+..++.++.++|.+. .+|+.+..+.+|++
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 34466888999999875 45567889999999999999998 88999999999999999999998 89999999999999
Q ss_pred EEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccc
Q 048302 165 LDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQ 244 (545)
Q Consensus 165 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 244 (545)
+++++|.+. .+|+.++.+..|+.++..+|+++ ++| ..+..+.++..+++.+|.+... |...-+++.|++|+...|.
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhh
Confidence 999999998 68888999999999999999998 788 5677889999999999999854 4444459999999999998
Q ss_pred ccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcC
Q 048302 245 FTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPE 323 (545)
Q Consensus 245 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 323 (545)
+. .+|..++.+.+|+.|++..|++. ..| .|..++ +..++++.|.+.-...+...+++.+..||+.+|++. +.|..
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 87 78889999999999999999987 556 677766 888899988887544455668999999999999998 88999
Q ss_pred CCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccc---------------------------------
Q 048302 324 IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIED--------------------------------- 370 (545)
Q Consensus 324 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--------------------------------- 370 (545)
+.-+.+|++||+++|.++ ..|..++.+ .|+.|.+.||++..+-.+
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 999999999999999998 567788888 999999999987421000
Q ss_pred -----c---ccCCCCCCEEEcccCeeeeccCccccCcc---ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccC
Q 048302 371 -----V---FDRCTNLSELVLVNNRISGSIPEYISELP---LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSL 439 (545)
Q Consensus 371 -----~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 439 (545)
. .....+.+.|++++-+++....+.|.... +..++++.|++. .+|..+..+..+.+.-+..|+..+.+
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccc
Confidence 0 01123567788888777743333444333 888999999998 67877777777665555555555688
Q ss_pred ChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCC
Q 048302 440 SWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT 519 (545)
Q Consensus 440 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 519 (545)
|..++.+++|..|++++|-+. .+|..++.+..|+.|||+.|.|. .+|.++..+..++.+-.++|++....|+.+.+|.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 889999999999999999887 78999999999999999999997 7899988888999999999999977777799999
Q ss_pred CCCeeeCCCCcccccCCCCcccc
Q 048302 520 QLQFLDLSHNNLSGPIPSKPSSY 542 (545)
Q Consensus 520 ~L~~L~l~~n~l~~~ip~~~~~~ 542 (545)
.|..||+.+|.+. .||+.+..+
T Consensus 506 nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred hcceeccCCCchh-hCChhhccc
Confidence 9999999999999 899887655
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=8.8e-36 Score=286.74 Aligned_cols=364 Identities=29% Similarity=0.396 Sum_probs=252.0
Q ss_pred cEEEEEeCCCCCcc-ccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 048302 65 RVVSLVIQTQSLKG-PVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSL 143 (545)
Q Consensus 65 ~v~~l~l~~~~~~~-~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (545)
.|+.++++++.++| ..|..+..+++++.|.|...++ ..+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence 57788888888884 6777788888888888888776 467888888888888888888876 55567788888888888
Q ss_pred ccccCC-ccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCc
Q 048302 144 RSNSFT-GEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLS 222 (545)
Q Consensus 144 ~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 222 (545)
..|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-+|++++|+|. ++|...|.+++.|-.||+++|.+.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 888876 347777888888888888888887 67888888888888888888887 788888888888888888888887
Q ss_pred ccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCC
Q 048302 223 GNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGK 302 (545)
Q Consensus 223 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 302 (545)
.+|..+..+..|++|.+++|.+.......+..+++|++|.+++.+-+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-------------------------------- 210 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-------------------------------- 210 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch--------------------------------
Confidence 67777888888888888888776544444555666666666655422
Q ss_pred CCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEE
Q 048302 303 WNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382 (545)
Q Consensus 303 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 382 (545)
...+|.++..+.+|..+|+|.|++. .+|+.+..+++|+.|+|++|+|+.... ..+...+|+.|+
T Consensus 211 --------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 211 --------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLN 274 (1255)
T ss_pred --------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhc
Confidence 0133444445555555555555554 455555555556666666665554321 223345556666
Q ss_pred cccCeeeeccCccccCcc-ccEEEccCCcceee-cChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCc
Q 048302 383 LVNNRISGSIPEYISELP-LKVLDLQYNNFTGV-IPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLT 460 (545)
Q Consensus 383 l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 460 (545)
++.|+++ .+|..+..++ |+.|.+.+|+++-. +|..++.+.+|+.+..++|.+. ..|+.++.|+.|+.|.|+.|++.
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 6666655 4454444444 55555555554422 5666666677777777766665 66677777777777777777766
Q ss_pred ccccccccccCCCCEEeCCCcccc
Q 048302 461 GQIPKKIGNLTNIQILKLNSNFFD 484 (545)
Q Consensus 461 ~~~~~~~~~l~~L~~L~Ls~n~l~ 484 (545)
.+|+++.-++.|+.||++.|+-.
T Consensus 353 -TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 353 -TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -echhhhhhcCCcceeeccCCcCc
Confidence 56777777777777777777654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=2.5e-35 Score=295.94 Aligned_cols=417 Identities=30% Similarity=0.403 Sum_probs=266.5
Q ss_pred CCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeec
Q 048302 90 LRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSG 169 (545)
Q Consensus 90 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 169 (545)
|+.|++++|.+ +.+|..+..+.+|+.|+++.|.+. ..|.+.+++.+|++|.|.+|.+. .+|..+..+++|++|+++.
T Consensus 47 L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 55555555544 234444555555555555555554 44445555555555555555444 4455555555555555555
Q ss_pred CCCCccCCcccCCCCCCCEEEccC-------------------CcCccccChhhhhCCCCCCEEEccCCcCcccCCcccc
Q 048302 170 NGLNGTFPSRLGDLTQLQDLGLSD-------------------NLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIG 230 (545)
Q Consensus 170 n~l~~~~~~~l~~l~~L~~L~l~~-------------------n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 230 (545)
|.+. .+|..+..++.+..+..++ |.+.+.++ .....++. .|++++|.+. ...+.
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~-~~i~~l~~--~ldLr~N~~~---~~dls 196 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL-IDIYNLTH--QLDLRYNEME---VLDLS 196 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh-cchhhhhe--eeecccchhh---hhhhh
Confidence 5544 3444444444444444444 44433333 11222222 3555555544 12344
Q ss_pred ccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEE
Q 048302 231 NLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLW 310 (545)
Q Consensus 231 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 310 (545)
.+.+|+.+....|++.... -.-++++.|+.+.|.+. ..........+++++++.+.+++. |+|+..+.+|+.+.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALN 270 (1081)
T ss_pred hccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eeccccccccceeeecchhhhhcc-hHHHHhcccceEec
Confidence 4555555555555544211 12356677777777666 333333334478888888888864 48888899999999
Q ss_pred ccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCC-CCEEEcccCeee
Q 048302 311 LYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTN-LSELVLVNNRIS 389 (545)
Q Consensus 311 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~-L~~L~l~~n~l~ 389 (545)
..+|.++ .+|..+....+|+.|.+.+|++. .+|....+...|++|+|..|++...++..+..... ++.++.+.|++.
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 9999886 67777788888888888888887 56667777888999999999888666554444433 666777777765
Q ss_pred eccCccccC--cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCccccccc
Q 048302 390 GSIPEYISE--LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKK 466 (545)
Q Consensus 390 ~~~~~~~~~--~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 466 (545)
. .| ..+. .+ |+.|++.+|.++...-..+.+...|+.|++++|++.......+.+++.|++|+||+|+++ .+|++
T Consensus 349 ~-lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 349 T-LP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred c-cc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 2 22 1221 12 888888888888777777788888888888888887444456778888888888888888 67788
Q ss_pred ccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccc-ccccccCCCCCCeeeCCCCc
Q 048302 467 IGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGS-IPEKIADLTQLQFLDLSHNN 530 (545)
Q Consensus 467 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 530 (545)
+.+++.|++|..-+|.+. ..| .+..++.|+.+|++.|+++.. +|.... .++|++||++||.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 888888888888888887 455 777888888888888888743 333332 3788888888887
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-34 Score=279.14 Aligned_cols=398 Identities=26% Similarity=0.339 Sum_probs=298.0
Q ss_pred CCCCCCEEECCCCCCC-ccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCE
Q 048302 86 NLSSLRILDLSKNLLF-GQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKS 164 (545)
Q Consensus 86 ~l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 164 (545)
-++.+|-.|+++|.++ +.+|.....+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+...+..++.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 4567778888888887 457777888888888888888876 77888888888888888888877 55566777888888
Q ss_pred EEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccc
Q 048302 165 LDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGIN 243 (545)
Q Consensus 165 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 243 (545)
+++.+|.+.. -+|..+-.+..|..|++++|++. ++| ..+....++-.|++++|+|....-..+.+++.|-.||+++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 8888887743 46667777888888888888887 677 45666677777778877777333334456666777777777
Q ss_pred cccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcC
Q 048302 244 QFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPE 323 (545)
Q Consensus 244 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 323 (545)
.+. .+|.....+..|++|++++|.+. ......
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~-----------------------------------------------hfQLrQ 192 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLN-----------------------------------------------HFQLRQ 192 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhh-----------------------------------------------HHHHhc
Confidence 766 45555666666666666666543 111123
Q ss_pred CCCCCCCCEEEcccCcCc-cCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-c
Q 048302 324 IGNCSMLKCISLSNNKLS-GPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-L 401 (545)
Q Consensus 324 ~~~~~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L 401 (545)
+..+++|+.|.+++.+-+ ..+|..+.++.+|..++++.|.+. ..|+.+-++++|+.|++++|+++.. ......-. +
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~l 270 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENL 270 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhh
Confidence 345667788888887654 358888999999999999999987 4567788899999999999999843 22222222 9
Q ss_pred cEEEccCCcceeecChhhhcCCCCCeEeccCccCcc-cCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCC
Q 048302 402 KVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEG-SLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNS 480 (545)
Q Consensus 402 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 480 (545)
+.|+++.|+++ ..|+++..+++|+.|.+.+|++.- -+|..+..+.+|+.+...+|.+. .+|++++.|..|+.|.|+.
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 99999999999 789999999999999999998853 47788999999999999999988 8999999999999999999
Q ss_pred ccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCC-----cccccCCCCcc
Q 048302 481 NFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHN-----NLSGPIPSKPS 540 (545)
Q Consensus 481 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-----~l~~~ip~~~~ 540 (545)
|.+. ++|+.+.-++.|+.||++.|.-.--.|..-..-++|+.-+|..- ++.|..|..++
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pasv~ 412 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPASVI 412 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCccccc
Confidence 9997 68899999999999999999855333322222245554444331 36666665444
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3e-34 Score=288.21 Aligned_cols=442 Identities=28% Similarity=0.347 Sum_probs=309.9
Q ss_pred EeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCC
Q 048302 70 VIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFT 149 (545)
Q Consensus 70 ~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 149 (545)
++++..++ .+|..+.....+..|+++.|.+....-+.+.+..+|+.|++++|++. ..|..+..+.+|+.|+++.|.+.
T Consensus 4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 34444443 34555555556899999999876544455666677999999999997 89999999999999999999998
Q ss_pred ccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccc
Q 048302 150 GEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEI 229 (545)
Q Consensus 150 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 229 (545)
..|.....+.+|+++.|.+|.+. ..|..+..+.+|++|++++|.+. .+| ..+..++.++.+..++|.... .+
T Consensus 82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~----~l 153 (1081)
T KOG0618|consen 82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQ----RL 153 (1081)
T ss_pred -hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhh----hh
Confidence 77888999999999999999987 78999999999999999999997 777 666777777777777772211 12
Q ss_pred cccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcc------------------ccccEEEccCCC
Q 048302 230 GNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAE------------------LQIFTFSAGMNQ 291 (545)
Q Consensus 230 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~------------------l~l~~l~l~~~~ 291 (545)
+... ++++++..|.+.+.++..+..+.. .++++.|.+....-..+.. ..+..++...|.
T Consensus 154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNP 230 (1081)
T ss_pred cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCc
Confidence 2222 666666666666666555555444 4666666654111111111 112333333333
Q ss_pred CCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCccccccc
Q 048302 292 LSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDV 371 (545)
Q Consensus 292 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 371 (545)
+....+ ...-.+|++++++.|+++ .+|.+++.+.+|+.++..+|.++ .+|..+....+|+.+...+|.+.-. |..
T Consensus 231 l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~ 305 (1081)
T KOG0618|consen 231 LTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPF 305 (1081)
T ss_pred ceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCc
Confidence 331111 112235666666666665 44566666666666666666664 4455555555666666666665533 233
Q ss_pred ccCCCCCCEEEcccCeeeeccCccc-cCcc--ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCC
Q 048302 372 FDRCTNLSELVLVNNRISGSIPEYI-SELP--LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVA 448 (545)
Q Consensus 372 ~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 448 (545)
....++|++|++..|++. ..|..+ .-.. ++.++.+.|.+.......=...+.|+.|.+.+|.+++...+.+.++.+
T Consensus 306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 455677777777777776 333322 2222 556666666665332222234567899999999999998889999999
Q ss_pred CCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCC
Q 048302 449 LEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSH 528 (545)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 528 (545)
|+.|+|++|++.......+.+++.|+.|+||||+++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|++.
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEeccc
Confidence 999999999999444456889999999999999998 67799999999999999999999 778 788999999999999
Q ss_pred Ccccc
Q 048302 529 NNLSG 533 (545)
Q Consensus 529 n~l~~ 533 (545)
|+++-
T Consensus 462 N~L~~ 466 (1081)
T KOG0618|consen 462 NNLSE 466 (1081)
T ss_pred chhhh
Confidence 99873
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.6e-24 Score=239.77 Aligned_cols=338 Identities=19% Similarity=0.207 Sum_probs=177.9
Q ss_pred ccCCCCCCCEEeCCCCc------CcccCCcccCCCC-CCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcc
Q 048302 107 QVSNLKRLKMLSLGENQ------LSGSVPSQLGLLT-RLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSR 179 (545)
Q Consensus 107 ~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 179 (545)
+|.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..| ...+|+.|++.++.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 44555555555554332 1123444444443 3555665555554 445444 3455666666655554 34445
Q ss_pred cCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCC
Q 048302 180 LGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNL 259 (545)
Q Consensus 180 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 259 (545)
+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|..-+.+|..+ ++++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 55555666666655543334442 4455556666665554444555555556666666665544333444333 45556
Q ss_pred CEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCccee-------cCCcCCCCCCCCCE
Q 048302 260 KAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVG-------RIPPEIGNCSMLKC 332 (545)
Q Consensus 260 ~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~~~~L~~ 332 (545)
+.|++++|.....+|.... .+..++++.+.+. .+|..+ .+++|++|.+.++.... ..+......++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~--nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDIST--NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccccC--CcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchh
Confidence 6666665543333332111 1333344444332 233322 34566666665532210 11111223456777
Q ss_pred EEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcce
Q 048302 333 ISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFT 412 (545)
Q Consensus 333 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 412 (545)
|++++|.....+|..+..+++|+.|++++|...+.+|... ++++|+.|++++|.....+|... ..++.|++++|.+.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~--~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--TNISDLNLSRTGIE 859 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc--cccCEeECCCCCCc
Confidence 7777776666667777777777777777764433444433 56677777777765444444321 12666677776665
Q ss_pred eecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 413 GVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 413 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
.+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 860 -~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 -EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 456666666667777776654444455555666666666666664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=6.3e-24 Score=237.80 Aligned_cols=356 Identities=21% Similarity=0.242 Sum_probs=269.9
Q ss_pred cEEEEEeCCCCCcc--ccCccCCCCCCCCEEECCCCCC------CccCCcccCCCC-CCCEEeCCCCcCcccCCcccCCC
Q 048302 65 RVVSLVIQTQSLKG--PVSPFLYNLSSLRILDLSKNLL------FGQLSPQVSNLK-RLKMLSLGENQLSGSVPSQLGLL 135 (545)
Q Consensus 65 ~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 135 (545)
+|..+.+....+.. ..+.++..+++|+.|.+..+.. ...+|..+..++ +|+.|++.++.+. .+|..+ ..
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~ 610 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RP 610 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-Cc
Confidence 45555444333321 1234578899999999976532 234666676664 6999999999886 788777 57
Q ss_pred CCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEE
Q 048302 136 TRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLD 215 (545)
Q Consensus 136 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 215 (545)
.+|++|++.+|.+. .++..+..+++|+.|+++++.....+|+ ++.+++|++|++++|.....+| ..+.++++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-hhhhccCCCCEEe
Confidence 89999999999987 6788889999999999998865556664 8889999999999987666888 6688999999999
Q ss_pred ccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCC---
Q 048302 216 VSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQL--- 292 (545)
Q Consensus 216 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~--- 292 (545)
+++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+.--.+..+.+..+..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 99986555677655 7899999999998765555543 468899999999876 456544322255555544221
Q ss_pred ----CCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccc
Q 048302 293 ----SGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTI 368 (545)
Q Consensus 293 ----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 368 (545)
....+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 11112222345789999999998888899999999999999999987655677665 6899999999999654444
Q ss_pred cccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccC
Q 048302 369 EDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLL 435 (545)
Q Consensus 369 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 435 (545)
|.. .++|+.|++++|.++ .+|..+..++ |+.|++++|+-...+|..+..++.|+.+++++|.-
T Consensus 842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 432 468999999999987 6787887777 99999999765546777788899999999999853
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-26 Score=210.25 Aligned_cols=412 Identities=22% Similarity=0.223 Sum_probs=239.2
Q ss_pred CCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccc-ccCCccCCccccCCCCCCEEEe
Q 048302 89 SLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRS-NSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 89 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~l 167 (545)
....+.|..|.++...+.+|+.+++||.|||++|.|+.+-|++|.++++|..|.+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788888988887788889999999999999999888888898888888877766 8888555567888888888888
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG 247 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 247 (545)
.-|++.-...+.|..+++|..|.+.+|.+. .++...|..+..++.+++..|.+.. ..+++.+.... .
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a------ 214 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-A------ 214 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-h------
Confidence 888888777778888888888888888887 6776677888888888887776321 11222211100 0
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcccChhhhccc-c-c-cEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcceecCCcC
Q 048302 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAEL-Q-I-FTFSAGMNQLSGPLP-SWLGKWNQMDSLWLYNNQFVGRIPPE 323 (545)
Q Consensus 248 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~-l-~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~ 323 (545)
..+..++...-..-..+...++....+..+... . + ..+. +.....+..| ..+..+++|++|++++|++++.-+.+
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~-~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS-SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc-cccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 011111111111112222222221111111111 0 0 0000 0011111222 23667777888888888887777777
Q ss_pred CCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccC-ccccCcccc
Q 048302 324 IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIP-EYISELPLK 402 (545)
Q Consensus 324 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 402 (545)
|.+...++.|.+..|++...-...|.++..|+.|+|.+|+|+...|..|....+|.+|++-.|++...-- .|+..
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~---- 369 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE---- 369 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH----
Confidence 7777778888888887776555667777777788888888877777777777777777777766531100 00000
Q ss_pred EEEccCCcceeecChhhhcCCCCCeEeccCccCcc---cCChh---------hhccCCCCEE-EccCCcCcccccccccc
Q 048302 403 VLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEG---SLSWE---------IGNAVALEEL-DLSSNMLTGQIPKKIGN 469 (545)
Q Consensus 403 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~---------~~~~~~L~~L-~L~~n~l~~~~~~~~~~ 469 (545)
.++.....|..+ -+....++.+.+++..+.+ ..|+. -..++.+.+. ..++..+. .+|..+.
T Consensus 370 --Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP- 443 (498)
T KOG4237|consen 370 --WLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP- 443 (498)
T ss_pred --HHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC-
Confidence 011111111111 0112233444444433211 11111 1122333332 22222232 4444332
Q ss_pred cCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCC
Q 048302 470 LTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHN 529 (545)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 529 (545)
..-.+|++.+|.++ .+|.. .+.+| .+|+++|++...--..|.++++|.++-|++|
T Consensus 444 -~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 -VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 23456777777776 34444 44566 7777777776444446677777777777665
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=7.4e-26 Score=207.53 Aligned_cols=379 Identities=21% Similarity=0.227 Sum_probs=210.7
Q ss_pred CCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccC-CcCccccChhhhhCCCCCCEEEc
Q 048302 138 LETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSD-NLLSGSLPVSLFTNLQSLSYLDV 216 (545)
Q Consensus 138 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l 216 (545)
-..++|..|.|+...|.+|+.+++||.|||++|.|+.+-|++|.++++|..|-+.+ |+|+ .+|...|+++.+++.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhc
Confidence 45566666666655556666666666666666666666666666666666655554 6666 666677777777777777
Q ss_pred cCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccC------------hhhhcccc-cc
Q 048302 217 SNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSL------------PEQLAELQ-IF 283 (545)
Q Consensus 217 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~------------~~~l~~l~-l~ 283 (545)
.-|.+.-...+.+..++++..|.+.+|.++..-...+..+..++.+.+..|.+.... |..+.... ..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 777766555666777777777777777766444446666777777777666532110 00000000 00
Q ss_pred EEEccCCCCCCCCccccC-CCCCCCEEEccCCcceecCCc-CCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcC
Q 048302 284 TFSAGMNQLSGPLPSWLG-KWNQMDSLWLYNNQFVGRIPP-EIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDG 361 (545)
Q Consensus 284 ~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 361 (545)
...+.+..+...-+..+. ....+..--.+.+...+..|. .|..+++|++|++++|.++++-+.+|.+...+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 000111111111111010 001111111111212222222 256677777777777777777777777777777777777
Q ss_pred CcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecCh-hhhcCCCCCeEeccCccCcccC
Q 048302 362 NMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPV-SLWNSENLMEFNAASNLLEGSL 439 (545)
Q Consensus 362 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~ 439 (545)
|++..+....|.++..|+.|++++|+++...|..|.... |..|++-.|.+.-.-.- ++. ..| .+....| .
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~--~Wl-----r~~~~~~-~ 379 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG--EWL-----RKKSVVG-N 379 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHH--HHH-----hhCCCCC-C
Confidence 777766666777777777777777777776666666655 77777766655421000 000 000 0111111 1
Q ss_pred ChhhhccCCCCEEEccCCcCcc---ccccc---------ccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcc
Q 048302 440 SWEIGNAVALEELDLSSNMLTG---QIPKK---------IGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNL 507 (545)
Q Consensus 440 ~~~~~~~~~L~~L~L~~n~l~~---~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 507 (545)
|. -+....++.+.+++..+.+ ..|+. -..++.+.+..=-.|+....+|..+.. .-.+|++.+|.+
T Consensus 380 ~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~--d~telyl~gn~~ 456 (498)
T KOG4237|consen 380 PR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV--DVTELYLDGNAI 456 (498)
T ss_pred CC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc--hhHHHhcccchh
Confidence 11 1222345666666664432 12221 123444444433334444466655433 567899999999
Q ss_pred cccccccccCCCCCCeeeCCCCccc
Q 048302 508 NGSIPEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 508 ~~~~~~~l~~l~~L~~L~l~~n~l~ 532 (545)
. .+|.. .+.+| .+|+++|+++
T Consensus 457 ~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 457 T-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred c-ccCHH--HHhhh-hcccccCcee
Confidence 9 67766 56788 8999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=5.7e-21 Score=199.00 Aligned_cols=264 Identities=25% Similarity=0.315 Sum_probs=153.4
Q ss_pred CCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEc
Q 048302 185 QLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVL 264 (545)
Q Consensus 185 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 264 (545)
+-..|+++++.++ .+|. .+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 4556777777776 5663 222 35777777777766 3443 2456677777777666 33432 346666666
Q ss_pred cCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCC
Q 048302 265 SLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPI 344 (545)
Q Consensus 265 ~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 344 (545)
++|.+.. +|. ..+.|+.|++++|++. .+|. ..++|+.|++++|.+++ +
T Consensus 270 s~N~L~~------------------------Lp~---lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 270 FSNPLTH------------------------LPA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred cCCchhh------------------------hhh---chhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-C
Confidence 6665541 121 1135677777777776 3443 23667788888887774 3
Q ss_pred CccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCC
Q 048302 345 PRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSEN 424 (545)
Q Consensus 345 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 424 (545)
|.. ..+|+.|++++|.+++.. . ...+|+.|++++|++++ +|... ..++.|++++|++.. +|.. ..+
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~-LP~lp--~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLAS-LPTLP--SELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred CCC---cccccccccccCcccccc-c---cccccceEecCCCccCC-CCCCC--cccceehhhcccccc-Cccc---ccc
Confidence 321 235677777777776432 2 12467777777777763 34321 126666777776663 3432 245
Q ss_pred CCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCC
Q 048302 425 LMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGN 504 (545)
Q Consensus 425 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 504 (545)
|+.|++++|++.+ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 6666666666653 3322 245666666666666 34432 234566666666665 4566666666666666666
Q ss_pred Ccccccccccc
Q 048302 505 NNLNGSIPEKI 515 (545)
Q Consensus 505 n~l~~~~~~~l 515 (545)
|++++..+..+
T Consensus 455 N~Ls~~~~~~L 465 (788)
T PRK15387 455 NPLSERTLQAL 465 (788)
T ss_pred CCCCchHHHHH
Confidence 66666555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.8e-20 Score=192.16 Aligned_cols=261 Identities=28% Similarity=0.364 Sum_probs=125.9
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEcc
Q 048302 113 RLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLS 192 (545)
Q Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 192 (545)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4556667766666 5565554 35667777766666 3443 2356666666666665 23432 3456666666
Q ss_pred CCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCccc
Q 048302 193 DNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGS 272 (545)
Q Consensus 193 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 272 (545)
+|.++ .+| .. ..+|+.|++++|.++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+.+
T Consensus 271 ~N~L~-~Lp-~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 271 SNPLT-HLP-AL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred CCchh-hhh-hc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 66665 444 11 234556666666655 23321 2455566666655553 2221 1234445555544431
Q ss_pred ChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCC
Q 048302 273 LPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSG 352 (545)
Q Consensus 273 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 352 (545)
+|.. .++|+.|++++|++. .+|.. .++|+.|++++|.++. +|.. ..
T Consensus 337 -----------------------LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 337 -----------------------LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred -----------------------cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---cc
Confidence 1110 124556666666655 23321 2345555666665552 3321 23
Q ss_pred CCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccC
Q 048302 353 SLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAAS 432 (545)
Q Consensus 353 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 432 (545)
+|+.|++++|++++.. .. .++|+.|++++|++++ +|... ..|+.|++++|+++ .+|..+..+++|+.+++++
T Consensus 383 ~L~~LdLs~N~Lt~LP-~l---~s~L~~LdLS~N~Lss-IP~l~--~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 383 GLKELIVSGNRLTSLP-VL---PSELKELMVSGNRLTS-LPMLP--SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred ccceEEecCCcccCCC-Cc---ccCCCEEEccCCcCCC-CCcch--hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 4555555555555322 11 2345555555555542 33211 11444444444444 3344444444444444444
Q ss_pred ccCcccCC
Q 048302 433 NLLEGSLS 440 (545)
Q Consensus 433 n~~~~~~~ 440 (545)
|++++..+
T Consensus 455 N~Ls~~~~ 462 (788)
T PRK15387 455 NPLSERTL 462 (788)
T ss_pred CCCCchHH
Confidence 44444333
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1e-19 Score=190.87 Aligned_cols=228 Identities=21% Similarity=0.250 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCC----CCCCCCCccccc----------------eeecCCcEEEEEeCCCCCccccCc
Q 048302 23 EPKQERRSLVHFKNSLQNPQVLSG----WNKTTRHCDWFG----------------VKCRHSRVVSLVIQTQSLKGPVSP 82 (545)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~----w~~~~~~c~w~~----------------~~c~~~~v~~l~l~~~~~~~~~~~ 82 (545)
..++|.+.+++..+.+..|++..+ |...+++|--.. |.|....|+.+.+.+.........
T Consensus 60 ~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~~~~ 139 (754)
T PRK15370 60 ASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSASG 139 (754)
T ss_pred CCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCcccccccccccccccCCC
Confidence 446788999999999999977666 999999995433 667777777776665332211100
Q ss_pred --cCCCCCCCCEEECCCCCCCccC---Cccc-----CCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccC
Q 048302 83 --FLYNLSSLRILDLSKNLLFGQL---SPQV-----SNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEM 152 (545)
Q Consensus 83 --~l~~l~~L~~L~ls~~~~~~~~---~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 152 (545)
...++...-. +-....-.+.. ..++ .-..+...|+++++.++ .+|..+. ++|+.|++++|.++ .+
T Consensus 140 ~~~~~~~~~~w~-~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sL 214 (754)
T PRK15370 140 SKDAVNYELIWS-EWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SL 214 (754)
T ss_pred CCChhhHHHHHH-HHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cC
Confidence 0000000000 00000000000 0000 11134567777777766 4565443 46777777777777 45
Q ss_pred CccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCcccccc
Q 048302 153 PSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNL 232 (545)
Q Consensus 153 p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 232 (545)
|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|.. +. .+|+.|++++|.++ .+|..+.
T Consensus 215 P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l~--s~L~~L~Ls~N~L~-~LP~~l~-- 282 (754)
T PRK15370 215 PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPER-LP--SALQSLDLFHNKIS-CLPENLP-- 282 (754)
T ss_pred Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChh-Hh--CCCCEEECcCCccC-ccccccC--
Confidence 55443 46777777777776 4454432 36777777777776 66633 22 46777777777776 4555443
Q ss_pred CCCCceecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 233 KKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 233 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
++|+.|++++|++++ +|..+. ++|+.|++++|.+.
T Consensus 283 ~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 283 EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 467777777777763 443332 35667777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.9e-19 Score=184.73 Aligned_cols=99 Identities=25% Similarity=0.403 Sum_probs=47.3
Q ss_pred CCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccC
Q 048302 377 NLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSS 456 (545)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 456 (545)
+|+.|++++|.+++ +|..+. ..|+.|++++|++. .+|..+ .++|+.|++++|.+. .+|..+. ..|+.|++++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP-PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASR 397 (754)
T ss_pred cceeccccCCcccc-CChhhc-CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhcc
Confidence 44444555544442 232221 12555555555544 233332 245556666666555 3343332 2456666666
Q ss_pred CcCcccccccc----cccCCCCEEeCCCcccc
Q 048302 457 NMLTGQIPKKI----GNLTNIQILKLNSNFFD 484 (545)
Q Consensus 457 n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~ 484 (545)
|++. .+|..+ ..++.+..|++.+|++.
T Consensus 398 N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 398 NNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6665 333332 23356666666666664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=5.3e-20 Score=179.76 Aligned_cols=283 Identities=23% Similarity=0.226 Sum_probs=153.8
Q ss_pred EEEccCCcCcc-cCCccccccCCCCceeccccccccc----CCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEc
Q 048302 213 YLDVSNNLLSG-NIPPEIGNLKKLSDLYLGINQFTGS----IPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSA 287 (545)
Q Consensus 213 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l 287 (545)
.|++.++.+++ .....+..+.+|+.|+++++.+++. ++..+...+++++++++++.+.+ .+..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~--------- 71 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQ--------- 71 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHH---------
Confidence 35566666552 3334445566677777777766421 33445556667777776665542 111110
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCC---CCCEEEcccCcCccC----CCccccCC-CCCcEEEC
Q 048302 288 GMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCS---MLKCISLSNNKLSGP----IPRELCDS-GSLVEINL 359 (545)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~L~~L~ls~n~l~~~----~~~~~~~~-~~L~~L~L 359 (545)
.++..+..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+++. +...+..+ ++|++|++
T Consensus 72 -------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 72 -------SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred -------HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 1223344456666666666666533333332222 266666666655421 11223333 45555555
Q ss_pred cCCcCccc----ccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccC
Q 048302 360 DGNMLSGT----IEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLL 435 (545)
Q Consensus 360 ~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 435 (545)
++|.+++. ....+..+++|++|++++|.+++... ..++..+..+++|+.|++++|.+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI-------------------RALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH-------------------HHHHHHHHhCCCCCEEeccCCcc
Confidence 55555421 12233344445555555444432110 01223344456777777777766
Q ss_pred cccC----ChhhhccCCCCEEEccCCcCccccccccc-----ccCCCCEEeCCCccccc----cCCcccccCCCCCEEeC
Q 048302 436 EGSL----SWEIGNAVALEELDLSSNMLTGQIPKKIG-----NLTNIQILKLNSNFFDG----IIPMEFGDCISLNTLDL 502 (545)
Q Consensus 436 ~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L 502 (545)
.+.. +..+..+++|++|++++|++++.....+. ..+.|+.|++++|.+++ .+...+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 5332 23455677788888888887753322222 23688888888888762 23345566678888888
Q ss_pred CCCccccc----ccccccCC-CCCCeeeCCCCcc
Q 048302 503 GNNNLNGS----IPEKIADL-TQLQFLDLSHNNL 531 (545)
Q Consensus 503 ~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l 531 (545)
++|.++.. ....+... +.|+++|+.+|++
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 88888744 33444445 6888888888874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.9e-20 Score=181.66 Aligned_cols=42 Identities=36% Similarity=0.336 Sum_probs=18.0
Q ss_pred ccCCCCCCEEEeecCCCCccCCcccCCCCC---CCEEEccCCcCc
Q 048302 156 LGDIKQLKSLDFSGNGLNGTFPSRLGDLTQ---LQDLGLSDNLLS 197 (545)
Q Consensus 156 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~~~ 197 (545)
+..+++|++|++++|.+.+..+..+..+.+ |++|++++|+++
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 344445555555555444322222222222 555555554443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.2e-19 Score=146.58 Aligned_cols=182 Identities=32% Similarity=0.506 Sum_probs=144.1
Q ss_pred cCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCC
Q 048302 83 FLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQL 162 (545)
Q Consensus 83 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 162 (545)
.+.++.+++.|.+|+|+++ .+|+.+..+.+|++|++++|++. .+|.+++.+++|+.|++.-|++. .+|.+|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3566778888888998885 56677888889999999999887 78888999999999999888887 788889999999
Q ss_pred CEEEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecc
Q 048302 163 KSLDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLG 241 (545)
Q Consensus 163 ~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 241 (545)
+.||+.+|.+.. .+|..|-.++.|+.|++++|.+. .+| ..++++++|+.|.+..|.+- .+|..++.++.|++|++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp-~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILP-PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCC-hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 999998888753 57888888888888888888887 677 55788888888888888877 678888888889999998
Q ss_pred cccccccCCcCCCCCC---CCCEEEccCCcCcc
Q 048302 242 INQFTGSIPAELGNCR---NLKAVVLSLNALSG 271 (545)
Q Consensus 242 ~n~l~~~~~~~l~~l~---~L~~L~l~~n~~~~ 271 (545)
+|.++ .+|..++++. +=+...+..|.+..
T Consensus 182 gnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 182 GNRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred cceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 88887 5665555432 22334455555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=9.1e-19 Score=142.99 Aligned_cols=167 Identities=32% Similarity=0.547 Sum_probs=148.0
Q ss_pred cCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCC
Q 048302 108 VSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQ 187 (545)
Q Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 187 (545)
+-++.+.+.|.+++|.++ .+|..++.+.+|+.|++++|++. .+|..++.+++|++|+++-|++. ..|..|+.++-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778899999999998 78889999999999999999998 88999999999999999999987 7899999999999
Q ss_pred EEEccCCcCcc-ccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccC
Q 048302 188 DLGLSDNLLSG-SLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSL 266 (545)
Q Consensus 188 ~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 266 (545)
.||+.+|.+.. .+| .-|..++.|+.|+++.|.++ .+|..++++++|+.|.+..|.+- ..|..++.+..|++|.+.+
T Consensus 106 vldltynnl~e~~lp-gnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLP-GNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCC-cchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999998875 456 55667888999999999998 78999999999999999999987 6888999999999999999
Q ss_pred CcCcccChhhhcccc
Q 048302 267 NALSGSLPEQLAELQ 281 (545)
Q Consensus 267 n~~~~~~~~~l~~l~ 281 (545)
|+++ .+|..++.+.
T Consensus 183 nrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 183 NRLT-VLPPELANLD 196 (264)
T ss_pred ceee-ecChhhhhhh
Confidence 9997 5555555543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=8.4e-14 Score=146.13 Aligned_cols=144 Identities=33% Similarity=0.585 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCCCCCc-----cccceeecCC------cEEEEEeCCCCCccccCccCCCCCCCCE
Q 048302 24 PKQERRSLVHFKNSLQNPQVLSGWNKTTRHC-----DWFGVKCRHS------RVVSLVIQTQSLKGPVSPFLYNLSSLRI 92 (545)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c-----~w~~~~c~~~------~v~~l~l~~~~~~~~~~~~l~~l~~L~~ 92 (545)
...|..+|..+|..+.++. ..+|.. ++| .|.|+.|... +|+.++++++.+.|.+|..+.++++|+.
T Consensus 370 ~~~~~~aL~~~k~~~~~~~-~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPL-RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred CchHHHHHHHHHHhcCCcc-cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 4568899999999987653 247853 445 6999999521 2555555555555555555555555555
Q ss_pred EECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCC-CCCCEEEeecC
Q 048302 93 LDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDI-KQLKSLDFSGN 170 (545)
Q Consensus 93 L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~l~~n 170 (545)
|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|+.++.+++|++|+|++|.+.+.+|..+... .++..+++.+|
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 5555555555555455555555555555555554455555555555555555555544444444332 23334444443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=8.7e-14 Score=134.60 Aligned_cols=194 Identities=27% Similarity=0.414 Sum_probs=153.2
Q ss_pred CCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEcc
Q 048302 328 SMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQ 407 (545)
Q Consensus 328 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 407 (545)
.--...|++.|.+. ++|..++.+..|+.+.+..|.+. .++..+.++..|+.++++.|+++ ..|..++.++|+.|.++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVS 151 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEe
Confidence 33456788888887 78888888889999999999887 45667888999999999999988 67888888899999999
Q ss_pred CCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccC
Q 048302 408 YNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGII 487 (545)
Q Consensus 408 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 487 (545)
+|+++ .+|..++....|..|+.+.|.+. .+|..+.++.+|+.|.++.|++. .+|+.+. .-.|..||+|+|+++ .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence 99998 66777777788888888888877 56667777888888888888887 5566666 445788888888887 67
Q ss_pred CcccccCCCCCEEeCCCCcccccccccc---cCCCCCCeeeCCCCc
Q 048302 488 PMEFGDCISLNTLDLGNNNLNGSIPEKI---ADLTQLQFLDLSHNN 530 (545)
Q Consensus 488 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~ 530 (545)
|-+|.+|+.|++|-|.+|.+. ..|..+ +...-.++|+...|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888888888888888888887 555544 334556677777774
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.5e-13 Score=129.76 Aligned_cols=174 Identities=32% Similarity=0.458 Sum_probs=106.7
Q ss_pred CCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEE
Q 048302 87 LSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLD 166 (545)
Q Consensus 87 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 166 (545)
+..-...|++.|.+. .+|..+..+..|+.+.++.|.+- .+|..++++..|++|+++.|+++ .+|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344455566666653 45555666666666666666665 56666666666666666666666 5555555543 56666
Q ss_pred eecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccccc
Q 048302 167 FSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFT 246 (545)
Q Consensus 167 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 246 (545)
+++|+++ .+|+.++...+|..|+.+.|.+. .+| ..+.++.+|+.|.+..|.+. .+|..+.. -.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slp-sql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLP-SQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hch-HHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence 6666665 55666666666666666666665 555 44556666666666666665 45555552 34566666666666
Q ss_pred ccCCcCCCCCCCCCEEEccCCcCc
Q 048302 247 GSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 247 ~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
.+|..|.++..|++|-|.+|.+.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC
Confidence 56666666666666666666665
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=3.1e-12 Score=117.07 Aligned_cols=232 Identities=22% Similarity=0.305 Sum_probs=163.4
Q ss_pred cCCCCCCCEEEccCCcceec----CCcCCCCCCCCCEEEcccCcCc---cCCCc-------cccCCCCCcEEECcCCcCc
Q 048302 300 LGKWNQMDSLWLYNNQFVGR----IPPEIGNCSMLKCISLSNNKLS---GPIPR-------ELCDSGSLVEINLDGNMLS 365 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~---~~~~~-------~~~~~~~L~~L~L~~n~i~ 365 (545)
+..+..++.+++++|.+... +...+...+.|+..++++-... ..+|+ .+..+|.|++++||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44567788888888877542 2223455667777777764221 22333 3445678899999998876
Q ss_pred cccc----ccccCCCCCCEEEcccCeeeeccCcc-------------ccCcc-ccEEEccCCcceee----cChhhhcCC
Q 048302 366 GTIE----DVFDRCTNLSELVLVNNRISGSIPEY-------------ISELP-LKVLDLQYNNFTGV----IPVSLWNSE 423 (545)
Q Consensus 366 ~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~-------------~~~~~-L~~L~l~~n~l~~~----~~~~~~~~~ 423 (545)
...+ ..+..+..|++|.|.+|.+....... ....+ |+++...+|++..- +...|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 4433 34466888999999988775322221 11122 89999999988633 334567778
Q ss_pred CCCeEeccCccCccc----CChhhhccCCCCEEEccCCcCccc----ccccccccCCCCEEeCCCccccccCCccc----
Q 048302 424 NLMEFNAASNLLEGS----LSWEIGNAVALEELDLSSNMLTGQ----IPKKIGNLTNIQILKLNSNFFDGIIPMEF---- 491 (545)
Q Consensus 424 ~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---- 491 (545)
.|+.+.+..|.+... +...+..+++|+.|||.+|-++.. +...++.++.|++|++++|.+.......|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999999987532 335678899999999999988743 34567788999999999999876544333
Q ss_pred -ccCCCCCEEeCCCCccccc----ccccccCCCCCCeeeCCCCcc
Q 048302 492 -GDCISLNTLDLGNNNLNGS----IPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 492 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 531 (545)
...++|++|.+.+|.++.. +...+...+.|++|+|++|++
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3468999999999998743 234456689999999999999
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-11 Score=132.36 Aligned_cols=200 Identities=24% Similarity=0.323 Sum_probs=118.4
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCC--CCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEE
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNL--LFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLS 142 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (545)
.++.+.+.++.+.. ++. -.+.+.|+.|-+.+|. +.......|..++.|++|||++|.-.+.+|..++.+.+|+||+
T Consensus 524 ~~rr~s~~~~~~~~-~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhh-ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 44555554444331 111 1233467777777775 4334444577788888888888776668888888888888888
Q ss_pred cccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCc-cccChhhhhCCCCCCEEEccCCcC
Q 048302 143 LRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLS-GSLPVSLFTNLQSLSYLDVSNNLL 221 (545)
Q Consensus 143 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~ 221 (545)
++++.+. .+|..+++++.|.+|++..+.....+|.....+++||+|.+...... +..-...+.++.+|+.+.......
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 8888887 78888888888888888887665555666667888888887665422 111112234444555544433222
Q ss_pred cccCCccccccCCCC----ceecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 222 SGNIPPEIGNLKKLS----DLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 222 ~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
.+-..+..++.|+ .+.+.++... ..+..+..+.+|+.|.+.++...
T Consensus 681 --~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 681 --LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred --HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 1111222223332 2332222222 33445566677777777766654
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=6.9e-12 Score=112.26 Aligned_cols=127 Identities=30% Similarity=0.308 Sum_probs=97.5
Q ss_pred ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCC
Q 048302 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNS 480 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 480 (545)
|+++++++|.++ .+..+..-.+.++.|+++.|.+.... .+..+++|+.|||++|.++ .+-.+=..+-+.++|.|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 778888888777 55666777788888888888876433 3677888999999999887 3333334577889999999
Q ss_pred ccccccCCcccccCCCCCEEeCCCCcccccc-cccccCCCCCCeeeCCCCcccc
Q 048302 481 NFFDGIIPMEFGDCISLNTLDLGNNNLNGSI-PEKIADLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 481 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 533 (545)
|.+.+. ..+..+-+|+.||+++|+|.... ...++++|.|+.+.+.+||+.+
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 988644 56777889999999999987432 2467889999999999999984
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.6e-11 Score=120.83 Aligned_cols=148 Identities=42% Similarity=0.579 Sum_probs=86.2
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCC-CCCEEEeecCCCCccCCcccCCCCCCCEEEccCC
Q 048302 116 MLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIK-QLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDN 194 (545)
Q Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 194 (545)
.+++..+.+. .....+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653 22233444566777777777766 5555555553 6777777777766 44455666777777777777
Q ss_pred cCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 195 LLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 195 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
+++ .++ ......+.|+.|++++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++.
T Consensus 174 ~l~-~l~-~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 174 DLS-DLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhh-hhh-hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 776 455 22225666777777777666 45554444555666666666432 23444555555555555555443
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=6.7e-11 Score=124.40 Aligned_cols=112 Identities=28% Similarity=0.494 Sum_probs=83.3
Q ss_pred CCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCC
Q 048302 425 LMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGN 504 (545)
Q Consensus 425 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 504 (545)
++.|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|.+++.+|..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcccccccccccCC-CCCCeeeCCCCcccccCC
Q 048302 505 NNLNGSIPEKIADL-TQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 505 n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~ip 536 (545)
|++++.+|..+... ..+..+++.+|+..+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 77777777766543 456677777777655554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=6.5e-11 Score=119.01 Aligned_cols=123 Identities=37% Similarity=0.528 Sum_probs=69.2
Q ss_pred EEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCC-CCCEEEccCCcCccccChhhhhCCCCCCEEEccC
Q 048302 140 TLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLT-QLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSN 218 (545)
Q Consensus 140 ~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 218 (545)
.+++..+.+. ..+..+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+| ..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh-hhhhccccccccccCC
Confidence 4666666553 22233445566777777777666 4444455553 6666777766665 443 3355666666666666
Q ss_pred CcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCc
Q 048302 219 NLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNA 268 (545)
Q Consensus 219 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 268 (545)
|.+. .++...+..++|+.|++++|+++ .+|........|+++.+++|.
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 6665 34444445566666666666665 344333334445555555553
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=2.4e-12 Score=117.82 Aligned_cols=138 Identities=19% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCCCcEEECcCCcCccc----ccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCC
Q 048302 351 SGSLVEINLDGNMLSGT----IEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLM 426 (545)
Q Consensus 351 ~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 426 (545)
.+.|+++....|++... +...|...+.|+.+.++.|.+...... .....+..|+.|+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~-------------------al~eal~~~~~Le 216 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT-------------------ALAEALEHCPHLE 216 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH-------------------HHHHHHHhCCcce
Confidence 45566666666655322 223445556666666666654321110 1223455666666
Q ss_pred eEeccCccCccc----CChhhhccCCCCEEEccCCcCcccccccc-----cccCCCCEEeCCCcccccc----CCccccc
Q 048302 427 EFNAASNLLEGS----LSWEIGNAVALEELDLSSNMLTGQIPKKI-----GNLTNIQILKLNSNFFDGI----IPMEFGD 493 (545)
Q Consensus 427 ~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~ 493 (545)
.||+.+|-++.. +...+..+++|++|++++|.+...-..+| ...|+|++|.+.+|.++.. +..+...
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 666666655422 23445566677777777776664322222 1356777777777776532 2233445
Q ss_pred CCCCCEEeCCCCcc
Q 048302 494 CISLNTLDLGNNNL 507 (545)
Q Consensus 494 l~~L~~L~L~~n~l 507 (545)
.+.|+.|+|++|.+
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 66777777777777
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=3.5e-11 Score=103.45 Aligned_cols=37 Identities=38% Similarity=0.552 Sum_probs=7.8
Q ss_pred CCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCC
Q 048302 135 LTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLN 173 (545)
Q Consensus 135 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 173 (545)
+.+|+.|++++|.+... +.+..+++|++|++++|.++
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC
Confidence 34444444444444421 12344444444444444444
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-11 Score=116.17 Aligned_cols=208 Identities=21% Similarity=0.182 Sum_probs=101.9
Q ss_pred CCCCCCCEEEccCCcceecCC-cCCCCCCCCCEEEcccCcCccC--CCccccCCCCCcEEECcCCcCcccccc-cccCCC
Q 048302 301 GKWNQMDSLWLYNNQFVGRIP-PEIGNCSMLKCISLSNNKLSGP--IPRELCDSGSLVEINLDGNMLSGTIED-VFDRCT 376 (545)
Q Consensus 301 ~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~~~ 376 (545)
.++.+|+.+.++++....... .....|++++.||++.|-+..- +......+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345667777777766542111 2344566777777777655421 222334566677777776665422211 112345
Q ss_pred CCCEEEcccCeeee-ccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccC-ChhhhccCCCCEEE
Q 048302 377 NLSELVLVNNRISG-SIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSL-SWEIGNAVALEELD 453 (545)
Q Consensus 377 ~L~~L~l~~n~l~~-~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~ 453 (545)
.|+.|.++.|.++- .+.......+ ++.|++..|............+..|++|++++|++.+.. ......++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 56666666666541 1111122223 666666665322222233334455666666666554322 12344455666666
Q ss_pred ccCCcCccc-cccc-----ccccCCCCEEeCCCcccccc-CCcccccCCCCCEEeCCCCccc
Q 048302 454 LSSNMLTGQ-IPKK-----IGNLTNIQILKLNSNFFDGI-IPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 454 L~~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
++.|++... .|+. ...+++|++|+++.|++.+. .-..+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666655532 1221 23455666666666665322 1123344455555555555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1e-10 Score=100.57 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=36.4
Q ss_pred CCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccc-cccCCCCEEeCCCccccccCC-cccccCCCCCE
Q 048302 422 SENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKI-GNLTNIQILKLNSNFFDGIIP-MEFGDCISLNT 499 (545)
Q Consensus 422 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~ 499 (545)
+.+|+.|++++|.+.... .+..++.|++|++++|+|+. +.+.+ ..+++|++|++++|++..... ..+..+++|++
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 455555566665555322 34556666666666666663 32233 346666666666666654321 34556667777
Q ss_pred EeCCCCccccccc---ccccCCCCCCeeeC
Q 048302 500 LDLGNNNLNGSIP---EKIADLTQLQFLDL 526 (545)
Q Consensus 500 L~L~~n~l~~~~~---~~l~~l~~L~~L~l 526 (545)
|++.+|+++..-- ..+..+|+|+.||-
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777776663211 13455677776653
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.6e-11 Score=115.66 Aligned_cols=161 Identities=23% Similarity=0.216 Sum_probs=71.8
Q ss_pred CCCCCCCEEeCCCCcCcccCC--cccCCCCCCCEEEcccccCCcc--CCccccCCCCCCEEEeecCCCCccCCcc-cCCC
Q 048302 109 SNLKRLKMLSLGENQLSGSVP--SQLGLLTRLETLSLRSNSFTGE--MPSELGDIKQLKSLDFSGNGLNGTFPSR-LGDL 183 (545)
Q Consensus 109 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l 183 (545)
+++++|+.+.|+++.+. ..+ .....|++++.|||+.|-+..- +-.....+|+|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34556666666666554 222 2344566666666666544421 1122344566666666666554211111 1134
Q ss_pred CCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccC-CcCCCCCCCCCEE
Q 048302 184 TQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSI-PAELGNCRNLKAV 262 (545)
Q Consensus 184 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L 262 (545)
++|+.|.++.|.++..--......+|+|+.|++..|............+..|+.|+|++|++-... ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 455555555555542111122334455555555555322122222233445555555555443211 1223444555555
Q ss_pred EccCCcCc
Q 048302 263 VLSLNALS 270 (545)
Q Consensus 263 ~l~~n~~~ 270 (545)
+++.+.+.
T Consensus 277 nls~tgi~ 284 (505)
T KOG3207|consen 277 NLSSTGIA 284 (505)
T ss_pred hccccCcc
Confidence 55544443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.3e-11 Score=107.94 Aligned_cols=203 Identities=23% Similarity=0.227 Sum_probs=127.9
Q ss_pred CccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCC---cCcccccccc
Q 048302 296 LPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGN---MLSGTIEDVF 372 (545)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n---~i~~~~~~~~ 372 (545)
+|-.+..+.+|+.+.++.|.-.. +......-|.|+++.+.+..++. .|. + +|.-..-+..+- -..|......
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~~~-l--~pe~~~~D~~~~E~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-VPS-L--LPETILADPSGSEPSTSNGSALVSA 280 (490)
T ss_pred cccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-ccc-c--cchhhhcCccCCCCCccCCceEEec
Confidence 33444556677777777764321 11111233667777776654431 111 1 011111111111 1112222233
Q ss_pred cCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCE
Q 048302 373 DRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEE 451 (545)
Q Consensus 373 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 451 (545)
...+.|+++|+++|.++ .+.+.+.-.+ ++.|+++.|.+... +.+..+++|+.||+++|.+.... .+-..+.+.+.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEee
Confidence 34567888888888877 4555565566 88888888888733 23778889999999999877333 34456778889
Q ss_pred EEccCCcCcccccccccccCCCCEEeCCCccccccCC-cccccCCCCCEEeCCCCcccc
Q 048302 452 LDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIP-MEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 452 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 509 (545)
|.|++|.+.+. .+++.+-+|..||+++|++..... ..++++|-|+.+.|.+|++.+
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999988744 567788889999999998864422 467888999999999998884
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=9.3e-11 Score=125.92 Aligned_cols=267 Identities=24% Similarity=0.285 Sum_probs=166.5
Q ss_pred cEEEEEeCCCC--CccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEE
Q 048302 65 RVVSLVIQTQS--LKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLS 142 (545)
Q Consensus 65 ~v~~l~l~~~~--~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (545)
.++++-+.++. +.......+..++.|++|||++|.-.+.+|..++.+-+||+|+++++.+. .+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 57788887775 33222334778999999999999888899999999999999999999998 8999999999999999
Q ss_pred cccccCCccCCccccCCCCCCEEEeecCCCC--ccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCC----EEEc
Q 048302 143 LRSNSFTGEMPSELGDIKQLKSLDFSGNGLN--GTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLS----YLDV 216 (545)
Q Consensus 143 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~----~L~l 216 (545)
+..+.....+|.....+.+||+|.+...... ......+..+.+|+.+........ +- ..+..++.|+ .+.+
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~-e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LL-EDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hH-hhhhhhHHHHHHhHhhhh
Confidence 9998877667777778999999999776422 223334455566666655433320 00 1122233332 3333
Q ss_pred cCCcCcccCCccccccCCCCceecccccccccCCcCCCCCC------CCCEEEccCCcCcccChhhhccccccEEEccCC
Q 048302 217 SNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCR------NLKAVVLSLNALSGSLPEQLAELQIFTFSAGMN 290 (545)
Q Consensus 217 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~------~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~ 290 (545)
.++... ..+..+..+.+|+.|.+.++.............. ++..+.+.++..
T Consensus 702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--------------------- 759 (889)
T KOG4658|consen 702 EGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--------------------- 759 (889)
T ss_pred cccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc---------------------
Confidence 333322 4456778889999999999887643332222111 111111111110
Q ss_pred CCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccC-CCccccCCCCCcEEECc
Q 048302 291 QLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGP-IPRELCDSGSLVEINLD 360 (545)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~ 360 (545)
...+.|..-.++|+.|.+..+.....+......+..++.+.+..+.+.+. .-...++++++..+.+.
T Consensus 760 ---~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 760 ---LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ---ccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 02233334457888888888876655555455555555555555555543 23333444444444333
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.5e-09 Score=76.58 Aligned_cols=59 Identities=44% Similarity=0.593 Sum_probs=27.9
Q ss_pred CCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCc
Q 048302 448 ALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNN 506 (545)
Q Consensus 448 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 506 (545)
+|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554443333444444455555555444444444444444444444444443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.6e-09 Score=76.52 Aligned_cols=61 Identities=43% Similarity=0.661 Sum_probs=57.1
Q ss_pred CCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcc
Q 048302 471 TNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 531 (545)
++|++|++++|++....+..|.++++|++|++++|.+....++.|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999987788999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3.7e-10 Score=113.68 Aligned_cols=150 Identities=33% Similarity=0.387 Sum_probs=77.2
Q ss_pred CCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEE
Q 048302 87 LSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLD 166 (545)
Q Consensus 87 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 166 (545)
+..++.+++..|.+.. +-..+..+++|+.|++.+|.+.. +...+..+++|++|++++|.|... ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4445555555555532 22235556666666666666652 222255566666666666666533 2355555566666
Q ss_pred eecCCCCccCCcccCCCCCCCEEEccCCcCccccCh-hhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccc
Q 048302 167 FSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPV-SLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQF 245 (545)
Q Consensus 167 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 245 (545)
+++|.+.. ...+..+++|+.+++++|++. .+.. . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 66666652 233444666666666666665 3331 1 24455555566665555421 2233333344445555544
Q ss_pred c
Q 048302 246 T 246 (545)
Q Consensus 246 ~ 246 (545)
+
T Consensus 221 ~ 221 (414)
T KOG0531|consen 221 S 221 (414)
T ss_pred e
Confidence 4
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.2e-10 Score=112.62 Aligned_cols=225 Identities=28% Similarity=0.295 Sum_probs=146.3
Q ss_pred cCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCC
Q 048302 300 LGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 379 (545)
+..+++++.+++.+|.+... ...+..+++|++|++++|.|+... .+..++.|+.|++++|.+... ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 55667888888888887632 222667788888888888887543 344556688888888888754 2355578888
Q ss_pred EEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccC--CCCEEEccC
Q 048302 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAV--ALEELDLSS 456 (545)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~L~~ 456 (545)
.+++++|.+....+....... ++.+++.+|.+... ..+..+..+..+++..|.+....+ +..+. +|+.+++++
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence 888888887744441022223 77778888877632 222333444445677776653322 11122 378888888
Q ss_pred CcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccc---cccc-ccCCCCCCeeeCCCCccc
Q 048302 457 NMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGS---IPEK-IADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 457 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~-l~~l~~L~~L~l~~n~l~ 532 (545)
|++. .++..+..+..+..|++++|.+... ..+...+.+..+....+.+... .... ....+.++.+.+.+|+..
T Consensus 242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 242 NRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred Cccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 8887 4435677788888888888888644 3445566777777777776521 2222 456678888888888887
Q ss_pred ccCC
Q 048302 533 GPIP 536 (545)
Q Consensus 533 ~~ip 536 (545)
...+
T Consensus 319 ~~~~ 322 (414)
T KOG0531|consen 319 KISS 322 (414)
T ss_pred cccc
Confidence 7655
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.1e-10 Score=101.01 Aligned_cols=178 Identities=24% Similarity=0.275 Sum_probs=101.7
Q ss_pred CCCEEEccCCccee-cCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCC-cCccc-ccccccCCCCCCEE
Q 048302 305 QMDSLWLYNNQFVG-RIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGN-MLSGT-IEDVFDRCTNLSEL 381 (545)
Q Consensus 305 ~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~~~~L~~L 381 (545)
.++++|+++..++. .+-..+..|.+|+.|.+.++++.+.+...++...+|+.++++.+ .++.. ..-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57888888877653 22223567888888888888888777777888888888888887 45432 22346778888888
Q ss_pred EcccCeeeeccCc-cccCcc--ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 382 VLVNNRISGSIPE-YISELP--LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 382 ~l~~n~l~~~~~~-~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
+++.|.+..+... .+.... ++.|+++++.-.-. ...+..-...+|+|.+|||++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~---------------------~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ---------------------KSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh---------------------hhHHHHHHHhCCceeeecccccc
Confidence 8888876644321 222222 66666666532100 00111122345555555555553
Q ss_pred -CcccccccccccCCCCEEeCCCccccccCCc---ccccCCCCCEEeCCCC
Q 048302 459 -LTGQIPKKIGNLTNIQILKLNSNFFDGIIPM---EFGDCISLNTLDLGNN 505 (545)
Q Consensus 459 -l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~L~~n 505 (545)
++......|..++.|++|.++.|.. .+|. .+...++|.+|++.+|
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3322233344455555555555543 2332 2344555666665554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=2.6e-09 Score=106.94 Aligned_cols=196 Identities=24% Similarity=0.240 Sum_probs=130.9
Q ss_pred CCCCEEEcccCcCccCC-CccccCCCCCcEEECcCCcCcccccccccC-CCCCCEEEcccCeee----------eccCcc
Q 048302 328 SMLKCISLSNNKLSGPI-PRELCDSGSLVEINLDGNMLSGTIEDVFDR-CTNLSELVLVNNRIS----------GSIPEY 395 (545)
Q Consensus 328 ~~L~~L~ls~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-~~~L~~L~l~~n~l~----------~~~~~~ 395 (545)
++++.|.+-...-.+.. |-.+..+.+|+.|.+.+|++.... .+.. -..|++|- ..|.+. |.+...
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccc
Confidence 34444444433322222 556667889999999999876321 1111 11233332 122211 111111
Q ss_pred ccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCE
Q 048302 396 ISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQI 475 (545)
Q Consensus 396 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 475 (545)
+.-..|...+.+.|.+. ....++.-++.++.|++++|++.... .+..++.|++|||+.|.+....--...++. |+.
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-hee
Confidence 11112777788888887 56677888899999999999998554 678899999999999999833222344555 999
Q ss_pred EeCCCccccccCCcccccCCCCCEEeCCCCcccccc-cccccCCCCCCeeeCCCCccc
Q 048302 476 LKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSI-PEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 476 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 532 (545)
|++++|.++.. ..+.++.+|+.||+++|-+.+.- ...+..+.+|++|+|.|||+.
T Consensus 237 L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999755 46788999999999999887431 123456779999999999987
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=3.6e-09 Score=105.99 Aligned_cols=156 Identities=33% Similarity=0.383 Sum_probs=78.3
Q ss_pred CccCCCCCCCCEEECCCCCCCccCCcccCC---------------------------------CCCCCEEeCCCCcCccc
Q 048302 81 SPFLYNLSSLRILDLSKNLLFGQLSPQVSN---------------------------------LKRLKMLSLGENQLSGS 127 (545)
Q Consensus 81 ~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~---------------------------------l~~L~~L~L~~n~l~~~ 127 (545)
|-.+..+..||+|.+.++.+... ..+.. -..|.+.+.+.|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 44577788899999988876321 00100 013444444444444 3
Q ss_pred CCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCc-ccCCCCCCCEEEccCCcCccccChhhhh
Q 048302 128 VPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPS-RLGDLTQLQDLGLSDNLLSGSLPVSLFT 206 (545)
Q Consensus 128 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 206 (545)
+..++.-++.|+.|+|++|+++.. ..+..+++|++|||++|.+. .+|. ....+. |+.|.+++|.++ ++ ..+.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL--~gie 251 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL--RGIE 251 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh--hhHH
Confidence 344444555566666666655533 24555556666666666554 2222 122222 555566665554 22 2245
Q ss_pred CCCCCCEEEccCCcCcccC-CccccccCCCCceeccccccc
Q 048302 207 NLQSLSYLDVSNNLLSGNI-PPEIGNLKKLSDLYLGINQFT 246 (545)
Q Consensus 207 ~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~ 246 (545)
++.+|+.||+++|-+.+.- -..+..+..|+.|+|.||.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 5555556666655554311 112334445555555555543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.4e-09 Score=94.49 Aligned_cols=178 Identities=22% Similarity=0.228 Sum_probs=110.9
Q ss_pred CCCEEEcccCcCccC-CCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEcc
Q 048302 329 MLKCISLSNNKLSGP-IPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQ 407 (545)
Q Consensus 329 ~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 407 (545)
.|+++|+++..++.. .-..+..+..|+.|.+.++++.+.+...++...+|+.++++.+.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG------------------- 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG------------------- 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc-------------------
Confidence 466677766665521 122234455666666666666655555555556666666655431
Q ss_pred CCccee-ecChhhhcCCCCCeEeccCccCcccCChh-h-hccCCCCEEEccCCc--Ccc-cccccccccCCCCEEeCCCc
Q 048302 408 YNNFTG-VIPVSLWNSENLMEFNAASNLLEGSLSWE-I-GNAVALEELDLSSNM--LTG-QIPKKIGNLTNIQILKLNSN 481 (545)
Q Consensus 408 ~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~-~~~~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~Ls~n 481 (545)
++. .....+..|+.|.+|+++.|.+....-.. + .--++|+.|++++++ +.. .+..-...+++|..||||+|
T Consensus 247 ---~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 247 ---FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ---cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 110 12234667788888888887664332211 1 113688899999985 221 22223457999999999998
Q ss_pred c-ccccCCcccccCCCCCEEeCCCCcccccccc---cccCCCCCCeeeCCCCc
Q 048302 482 F-FDGIIPMEFGDCISLNTLDLGNNNLNGSIPE---KIADLTQLQFLDLSHNN 530 (545)
Q Consensus 482 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~ 530 (545)
. ++......|.+++.|++|.++.|... +|. .+...|+|.+||+-+|-
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 5 44333355778899999999999643 444 34778999999998764
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.40 E-value=5.1e-07 Score=58.10 Aligned_cols=38 Identities=50% Similarity=1.056 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCC-C-CCCCCCCCC--CCCccccceeec
Q 048302 25 KQERRSLVHFKNSLQN-P-QVLSGWNKT--TRHCDWFGVKCR 62 (545)
Q Consensus 25 ~~~~~~l~~~~~~~~~-~-~~~~~w~~~--~~~c~w~~~~c~ 62 (545)
.+|+++|++||+++.+ + ..+.+|+.. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999999984 5 689999887 689999999995
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=2.1e-08 Score=79.73 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=97.5
Q ss_pred ccEEEccCCcceeecChhh---hcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEe
Q 048302 401 LKVLDLQYNNFTGVIPVSL---WNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILK 477 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 477 (545)
+-.++++.|++. .+++.. .....|+..++++|.+....+..-..++.++.|++++|.++ .+|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455667777665 334433 34455666788888887443333455678999999999998 6788899999999999
Q ss_pred CCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCCcc
Q 048302 478 LNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSKPS 540 (545)
Q Consensus 478 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~~~ 540 (545)
++.|++. ..|..+..+.++-.|+..+|.+. .+|..+-.-...-..++.++++.+.-|....
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 9999997 55666666889999999999887 5554443334444566788888888876654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.7e-08 Score=88.67 Aligned_cols=85 Identities=27% Similarity=0.316 Sum_probs=41.1
Q ss_pred CCCCCEEEcccccCCc--cCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCC
Q 048302 135 LTRLETLSLRSNSFTG--EMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLS 212 (545)
Q Consensus 135 l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 212 (545)
+++++.+||.+|.++. .+...+.++|.|++|+++.|++...+-..-....+|++|-+.+..+.-.-....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4555666666665551 12233455666666666666554322111123445555555555443222223344555555
Q ss_pred EEEccCC
Q 048302 213 YLDVSNN 219 (545)
Q Consensus 213 ~L~l~~n 219 (545)
+|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555555
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=2.2e-07 Score=82.75 Aligned_cols=231 Identities=20% Similarity=0.181 Sum_probs=114.2
Q ss_pred CCCCCCCEEEccCCcceecCCcC----CCCCCCCCEEEcccCcCc---cCCC-------ccccCCCCCcEEECcCCcCcc
Q 048302 301 GKWNQMDSLWLYNNQFVGRIPPE----IGNCSMLKCISLSNNKLS---GPIP-------RELCDSGSLVEINLDGNMLSG 366 (545)
Q Consensus 301 ~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~ls~n~l~---~~~~-------~~~~~~~~L~~L~L~~n~i~~ 366 (545)
..+..++.+++++|.+...-..+ +.+-.+|+..+++.-... ..++ ..+..||.|+.++||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34567777888888776433222 334455666665543221 1111 234456677777777776654
Q ss_pred cccc----cccCCCCCCEEEcccCeeeeccCcccc-------------Ccc-ccEEEccCCcceeecCh-----hhhcCC
Q 048302 367 TIED----VFDRCTNLSELVLVNNRISGSIPEYIS-------------ELP-LKVLDLQYNNFTGVIPV-----SLWNSE 423 (545)
Q Consensus 367 ~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~-------------~~~-L~~L~l~~n~l~~~~~~-----~~~~~~ 423 (545)
..++ .++.-+.|.+|.+++|.+.......++ ..+ |+.+....|++.. .+. .+..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhc
Confidence 4332 234456667777776655321111111 112 6666666665541 111 111124
Q ss_pred CCCeEeccCccCcccC-----ChhhhccCCCCEEEccCCcCccc----ccccccccCCCCEEeCCCccccccCCccc---
Q 048302 424 NLMEFNAASNLLEGSL-----SWEIGNAVALEELDLSSNMLTGQ----IPKKIGNLTNIQILKLNSNFFDGIIPMEF--- 491 (545)
Q Consensus 424 ~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l--- 491 (545)
+|+.+.+..|.+...- ...+..+.+|+.|||.+|-++.. +...++.++.|+.|.+.+|-++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 5666666666554221 11234456666666666665522 22334455566666666666554322221
Q ss_pred ---ccCCCCCEEeCCCCccccccccc-----c--cCCCCCCeeeCCCCccc
Q 048302 492 ---GDCISLNTLDLGNNNLNGSIPEK-----I--ADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 492 ---~~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~l~ 532 (545)
...++|..|...+|.+.+.+... + ..+|-|..+.+.||++.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 12356666666666544322111 1 33455666666666654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.8e-07 Score=83.17 Aligned_cols=182 Identities=18% Similarity=0.090 Sum_probs=91.6
Q ss_pred CCCCEEEccCCccee--cCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCccc-ccccccCCCCCCE
Q 048302 304 NQMDSLWLYNNQFVG--RIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGT-IEDVFDRCTNLSE 380 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~~~~L~~ 380 (545)
+.++.+++.+|.++. ++...+.++|.|+.|+++.|++...+...-....+|++|-|.+..+.-. ....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 455556666665542 2222345667777777777776644433223456777777777765432 2234556777777
Q ss_pred EEcccCeeeecc--CccccCcc--ccEEEccCCcceee--cChhhhcCCCCCeEeccCccCcccCC-hhhhccCCCCEEE
Q 048302 381 LVLVNNRISGSI--PEYISELP--LKVLDLQYNNFTGV--IPVSLWNSENLMEFNAASNLLEGSLS-WEIGNAVALEELD 453 (545)
Q Consensus 381 L~l~~n~l~~~~--~~~~~~~~--L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ 453 (545)
+.++.|.+.... ........ ++.+....|..... +...-.-++++..+-+..|++.+.-. +....+|.+.-|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 777777443211 11111111 44454444433210 00111223555555565555543221 2233445555566
Q ss_pred ccCCcCccc-ccccccccCCCCEEeCCCccccc
Q 048302 454 LSSNMLTGQ-IPKKIGNLTNIQILKLNSNFFDG 485 (545)
Q Consensus 454 L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 485 (545)
|+.++|..- ..+.+..+++|..|.++++++.+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 666665432 12345556666666666666544
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=2e-07 Score=74.20 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=35.5
Q ss_pred CCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEcc
Q 048302 186 LQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLS 265 (545)
Q Consensus 186 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 265 (545)
|...++++|.+. .+|..+..+.+.++.+++++|.+. .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 333344444443 344333333344444444444444 34444444444555555444444 333333334444444444
Q ss_pred CCcC
Q 048302 266 LNAL 269 (545)
Q Consensus 266 ~n~~ 269 (545)
+|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=2.9e-06 Score=75.72 Aligned_cols=187 Identities=21% Similarity=0.224 Sum_probs=105.1
Q ss_pred CCCCCCEEECCCCCCCcc----CCcccCCCCCCCEEeCCCCc---CcccCC-------cccCCCCCCCEEEcccccCCcc
Q 048302 86 NLSSLRILDLSKNLLFGQ----LSPQVSNLKRLKMLSLGENQ---LSGSVP-------SQLGLLTRLETLSLRSNSFTGE 151 (545)
Q Consensus 86 ~l~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~L~~n~~~~~ 151 (545)
.+..+..++||+|.+... +...+.+-++|+..+++.-. ....++ .++.+||+|+..+||.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 345566666666665432 22334445566666655421 111222 2345667777777777766644
Q ss_pred CCcc----ccCCCCCCEEEeecCCCCccC----C---------cccCCCCCCCEEEccCCcCccccCh----hhhhCCCC
Q 048302 152 MPSE----LGDIKQLKSLDFSGNGLNGTF----P---------SRLGDLTQLQDLGLSDNLLSGSLPV----SLFTNLQS 210 (545)
Q Consensus 152 ~p~~----l~~l~~L~~L~l~~n~l~~~~----~---------~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~ 210 (545)
.|.. ++.-..|.+|.+++|.+.-.. . .-..+-|.|++.....|++. ..+. ..+..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence 4433 345566777777777553111 1 11234467888888877775 3331 22333357
Q ss_pred CCEEEccCCcCcccC-----CccccccCCCCceeccccccccc----CCcCCCCCCCCCEEEccCCcCcccC
Q 048302 211 LSYLDVSNNLLSGNI-----PPEIGNLKKLSDLYLGINQFTGS----IPAELGNCRNLKAVVLSLNALSGSL 273 (545)
Q Consensus 211 L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~ 273 (545)
|+++.+..|.|.-.. -..+..+.+|+.||+..|.++.. ....+..++.|+.|.+.+|-++...
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 788888888765321 12334567888888888877632 2344566677888888887766433
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=8.6e-06 Score=52.43 Aligned_cols=36 Identities=44% Similarity=0.719 Sum_probs=17.6
Q ss_pred CCCEEEccCCcCcccccccccccCCCCEEeCCCcccc
Q 048302 448 ALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFD 484 (545)
Q Consensus 448 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 484 (545)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=2.9e-05 Score=66.56 Aligned_cols=57 Identities=30% Similarity=0.347 Sum_probs=23.2
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCC
Q 048302 114 LKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGL 172 (545)
Q Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l 172 (545)
...+||++|.+.. -+.|..++.|.+|.+.+|+|+..-|.--..+++|+.|.+.+|.+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3444444444421 12333444444444444444433333222334444444444443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.6e-05 Score=51.18 Aligned_cols=34 Identities=38% Similarity=0.719 Sum_probs=12.1
Q ss_pred CCEEEcccccCCccCCccccCCCCCCEEEeecCCC
Q 048302 138 LETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGL 172 (545)
Q Consensus 138 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l 172 (545)
|++|++++|+++ .+|..++++++|++|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333444444333 2222333344444444444333
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=6e-06 Score=87.11 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=15.6
Q ss_pred CCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCC
Q 048302 134 LLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNG 171 (545)
Q Consensus 134 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 171 (545)
++++|..||+|+++++.. .+++++++|+.|.+.+-.
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCC
Confidence 344444444444444422 334444444444444433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=6.9e-05 Score=64.28 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=59.2
Q ss_pred ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccc-cccccccCCCCEEeCC
Q 048302 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQI-PKKIGNLTNIQILKLN 479 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls 479 (545)
...+++++|.+... ..|..++.|.+|.+.+|.+....|..-..++.|..|.+.+|+|.... ..-+..||+|++|-+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 55667777766522 34556666777777777776666655555666677777776654210 1234556666666666
Q ss_pred CccccccCC---cccccCCCCCEEeCCCC
Q 048302 480 SNFFDGIIP---MEFGDCISLNTLDLGNN 505 (545)
Q Consensus 480 ~n~l~~~~~---~~l~~l~~L~~L~L~~n 505 (545)
+|+....-- ..+..+++|+.||.++=
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 666543211 12445666666666553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=9.4e-05 Score=72.01 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=84.5
Q ss_pred ccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCC-cceeecChhhhcCCCCC
Q 048302 348 LCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYN-NFTGVIPVSLWNSENLM 426 (545)
Q Consensus 348 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~ 426 (545)
+..+.+++.|++++|.++..+ . -..+|+.|.+++|.-...+|..+. ..|+.|++++| .+. .+| ..|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchhh-hhhhheEccCccccc-ccc------cccc
Confidence 344688999999999877553 1 245799999998765456665432 23999999988 443 333 4577
Q ss_pred eEeccCccCc--ccCChhhhccCCCCEEEccCCcCc--ccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeC
Q 048302 427 EFNAASNLLE--GSLSWEIGNAVALEELDLSSNMLT--GQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDL 502 (545)
Q Consensus 427 ~L~l~~n~~~--~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 502 (545)
.|++..+... +.+| ++|+.|.+.+++.. ..++.. -.++|++|++++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 7777765542 2333 35667777543311 011111 1257888888888765 3444443 48888888
Q ss_pred CCCc
Q 048302 503 GNNN 506 (545)
Q Consensus 503 ~~n~ 506 (545)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7763
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00015 Score=70.55 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=95.9
Q ss_pred ccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCE
Q 048302 372 FDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEE 451 (545)
Q Consensus 372 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 451 (545)
+..+.+++.|++++|.++ .+|. + ...|+.|.+++|.-...+|..+ .++|+.|++++|.....+| ++|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 455789999999999776 4452 1 1129999999875544666655 3689999999984333454 46888
Q ss_pred EEccCCcCcc--cccccccccCCCCEEeCCCcc-ccc-cCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCC
Q 048302 452 LDLSSNMLTG--QIPKKIGNLTNIQILKLNSNF-FDG-IIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLS 527 (545)
Q Consensus 452 L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 527 (545)
|+++.+.... .+| ++|+.|.+.+++ ... ..|..+ .++|++|++++|... ..|..+. .+|+.|+++
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 8888766531 233 357788876543 211 112111 258999999999876 4555554 689999998
Q ss_pred CCc------ccccCCCCc
Q 048302 528 HNN------LSGPIPSKP 539 (545)
Q Consensus 528 ~n~------l~~~ip~~~ 539 (545)
.|. -.+.+|+.+
T Consensus 186 ~n~~~sLeI~~~sLP~nl 203 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL 203 (426)
T ss_pred ccccccccCccccccccc
Confidence 874 223566554
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00038 Score=57.57 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=28.5
Q ss_pred cCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCC
Q 048302 108 VSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQ 187 (545)
Q Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 187 (545)
|.++.+|+.+.+.. .+......+|..+++|+.+.+..+ +...-...|.++++++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444444444442 233233344444444555544442 3322233344444455555433 22212222344444444
Q ss_pred EEEccC
Q 048302 188 DLGLSD 193 (545)
Q Consensus 188 ~L~l~~ 193 (545)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 444433
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=2.8e-05 Score=82.19 Aligned_cols=150 Identities=22% Similarity=0.198 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCCcc-ccCcc-CCCCCCCCEEECCCCCCCc-cCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEE
Q 048302 65 RVVSLVIQTQSLKG-PVSPF-LYNLSSLRILDLSKNLLFG-QLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETL 141 (545)
Q Consensus 65 ~v~~l~l~~~~~~~-~~~~~-l~~l~~L~~L~ls~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (545)
++..++++|...-. ..+.. -..+|.|+.|.+++-.+.. .+.....++++|+.||+|+++++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 67777777743321 11212 2458999999999987643 3444567899999999999999744 678999999999
Q ss_pred EcccccCCc-cCCccccCCCCCCEEEeecCCCCccC--C----cccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEE
Q 048302 142 SLRSNSFTG-EMPSELGDIKQLKSLDFSGNGLNGTF--P----SRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYL 214 (545)
Q Consensus 142 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 214 (545)
.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+.+-......-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 998766552 12235788999999999987654211 1 1123478888888888877765544444445555555
Q ss_pred Ec
Q 048302 215 DV 216 (545)
Q Consensus 215 ~l 216 (545)
.+
T Consensus 281 ~~ 282 (699)
T KOG3665|consen 281 AA 282 (699)
T ss_pred hh
Confidence 43
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.48 E-value=0.00047 Score=57.00 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=68.5
Q ss_pred ccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCC
Q 048302 82 PFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQ 161 (545)
Q Consensus 82 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~ 161 (545)
..+.+.++|+.+.+.. .+.......|.++.+|+.+.+..+ +.......|.++++++++.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466677888888874 454555667888888999999875 6555667788888899999976 444344567788999
Q ss_pred CCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCC
Q 048302 162 LKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLS 212 (545)
Q Consensus 162 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 212 (545)
|+.+++..+ +.......+.+. +|+.+.+.. .+. .++...|.++++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 999999765 554555567777 888888876 333 46667777776664
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=6.5e-06 Score=73.82 Aligned_cols=100 Identities=25% Similarity=0.209 Sum_probs=77.7
Q ss_pred CCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCC-cccccCCCCCEE
Q 048302 422 SENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIP-MEFGDCISLNTL 500 (545)
Q Consensus 422 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 500 (545)
+.+.+.|++.+|.+.+.- ....++.|+.|.|+-|+|+.. ..+..|++|++|+|+.|.|..... ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456677888888877542 356789999999999999855 457889999999999999875422 457889999999
Q ss_pred eCCCCcccccccc-----cccCCCCCCeee
Q 048302 501 DLGNNNLNGSIPE-----KIADLTQLQFLD 525 (545)
Q Consensus 501 ~L~~n~l~~~~~~-----~l~~l~~L~~L~ 525 (545)
.|..|+..+..+. .+..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999998876553 356678888876
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.39 E-value=3.5e-06 Score=79.80 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=47.9
Q ss_pred hccCCCCEEEccCCcC-ccc----ccccccccCCCCEEeCCCcccc-ccCCcccccCCCCCEEeCCCCccccc--ccccc
Q 048302 444 GNAVALEELDLSSNML-TGQ----IPKKIGNLTNIQILKLNSNFFD-GIIPMEFGDCISLNTLDLGNNNLNGS--IPEKI 515 (545)
Q Consensus 444 ~~~~~L~~L~L~~n~l-~~~----~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l 515 (545)
.+++.|+.|.+++|.. ++. ....-..+..|+.+.|++++.. +...+.+..+++|+.+++.+|+-... +...-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 4466777777777653 322 1122345677888888888754 23345567778888888888864322 22233
Q ss_pred cCCCCCCeee
Q 048302 516 ADLTQLQFLD 525 (545)
Q Consensus 516 ~~l~~L~~L~ 525 (545)
.++|++++..
T Consensus 449 ~~lp~i~v~a 458 (483)
T KOG4341|consen 449 THLPNIKVHA 458 (483)
T ss_pred hhCccceehh
Confidence 5566665543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.37 E-value=4.6e-06 Score=79.02 Aligned_cols=131 Identities=18% Similarity=0.055 Sum_probs=88.0
Q ss_pred ccEEEccCCcc-eeecChh-hhcCCCCCeEeccCccC-cccCChh-hhccCCCCEEEccCCcCccc--ccccccccCCCC
Q 048302 401 LKVLDLQYNNF-TGVIPVS-LWNSENLMEFNAASNLL-EGSLSWE-IGNAVALEELDLSSNMLTGQ--IPKKIGNLTNIQ 474 (545)
Q Consensus 401 L~~L~l~~n~l-~~~~~~~-~~~~~~L~~L~l~~n~~-~~~~~~~-~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~ 474 (545)
++.+..+++.- +...-.. -.++.+|+.+.++.++. ++.-... -.+++.|+.+++..|..... +..--.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 67777776643 2222222 34678899999998863 3222222 25678999999999975422 222234789999
Q ss_pred EEeCCCccccccC-----CcccccCCCCCEEeCCCCccc-ccccccccCCCCCCeeeCCCCcc
Q 048302 475 ILKLNSNFFDGII-----PMEFGDCISLNTLDLGNNNLN-GSIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 475 ~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l 531 (545)
+|.+++|...+-. ...-.++..|+.+.|++++.. ......+..++.|+.+++-+|+-
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 9999999754221 222345678999999999865 34456678889999999999863
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00033 Score=62.86 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=16.0
Q ss_pred CCCCCCEEEeecC--CCCccCCcccCCCCCCCEEEccCCcC
Q 048302 158 DIKQLKSLDFSGN--GLNGTFPSRLGDLTQLQDLGLSDNLL 196 (545)
Q Consensus 158 ~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~ 196 (545)
.+++|++|.++.| .+.+.++-....+++|+++++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3344444444444 33332322233334444444444444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00067 Score=60.93 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=76.2
Q ss_pred cChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCC--cCcccccccccccCCCCEEeCCCcccccc-CCccc
Q 048302 415 IPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSN--MLTGQIPKKIGNLTNIQILKLNSNFFDGI-IPMEF 491 (545)
Q Consensus 415 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l 491 (545)
+....-....|+.+.+.+..++... .+-.+++|+.|.++.| ++.+.++.-...+++|++|++++|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 3334444566777777777665322 3455788999999999 66655555556679999999999998632 11235
Q ss_pred ccCCCCCEEeCCCCccccccc---ccccCCCCCCeeeCCCCc
Q 048302 492 GDCISLNTLDLGNNNLNGSIP---EKIADLTQLQFLDLSHNN 530 (545)
Q Consensus 492 ~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~ 530 (545)
..+.+|..|++.+|..+...- ..+.-+++|+++|-.+..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 667789999999998775211 234557888877644443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=5.1e-05 Score=68.27 Aligned_cols=56 Identities=27% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCC
Q 048302 113 RLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGL 172 (545)
Q Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l 172 (545)
+.+.|++-+|.+.++ ....+++.|++|.|+-|.|+.. ..+..+++|+.|.|..|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc
Confidence 344444545444322 1223344444444444444422 2234444444444444443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.32 E-value=0.00025 Score=73.49 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=9.7
Q ss_pred cCCCCCCCEEEccCCc
Q 048302 300 LGKWNQMDSLWLYNNQ 315 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~ 315 (545)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455666666666665
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00038 Score=72.16 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=38.5
Q ss_pred cCCCCCCCEEEccCC-cceecCC----cCCCCCCCCCEEEcccCc-CccCCCccccC-CCCCcEEECcCCc-Cccc-ccc
Q 048302 300 LGKWNQMDSLWLYNN-QFVGRIP----PEIGNCSMLKCISLSNNK-LSGPIPRELCD-SGSLVEINLDGNM-LSGT-IED 370 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n-~~~~~~~----~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~-~~~L~~L~L~~n~-i~~~-~~~ 370 (545)
...++.|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.. +++|++|.+.+|. +++. +..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345556666666552 1111111 112334555556665555 33222222222 4556665555554 3322 122
Q ss_pred cccCCCCCCEEEcccCe
Q 048302 371 VFDRCTNLSELVLVNNR 387 (545)
Q Consensus 371 ~~~~~~~L~~L~l~~n~ 387 (545)
....+++|++|++++|.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 23445556666665554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.28 E-value=0.0001 Score=74.52 Aligned_cols=184 Identities=26% Similarity=0.253 Sum_probs=91.3
Q ss_pred CCEEEcccCcCccCCC----ccccCCCCCcEEECcCCcCccccc----ccccCC-CCCCEEEcccCeeeeccCccccCcc
Q 048302 330 LKCISLSNNKLSGPIP----RELCDSGSLVEINLDGNMLSGTIE----DVFDRC-TNLSELVLVNNRISGSIPEYISELP 400 (545)
Q Consensus 330 L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~ 400 (545)
+..+.+.+|.+..... ..+...++|+.|++++|.+.+... ..+... ..++.|++..|.++.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------ 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------
Confidence 5666677776654322 233445666667776666653211 111221 2344444444444322111
Q ss_pred ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcc----cCChhhh----ccCCCCEEEccCCcCcccc----ccccc
Q 048302 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEG----SLSWEIG----NAVALEELDLSSNMLTGQI----PKKIG 468 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~----~~~~L~~L~L~~n~l~~~~----~~~~~ 468 (545)
.+...+.....++.++++.|.+.. .++..+. ...++++|.+++|.++... ...+.
T Consensus 163 -------------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 163 -------------PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred -------------HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 123334444555555555554421 1111222 3456666777776665321 12233
Q ss_pred ccCC-CCEEeCCCcccccc----CCcccccC-CCCCEEeCCCCcccccc----cccccCCCCCCeeeCCCCccc
Q 048302 469 NLTN-IQILKLNSNFFDGI----IPMEFGDC-ISLNTLDLGNNNLNGSI----PEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 469 ~l~~-L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~ 532 (545)
..++ +.+|++.+|.+.+. ..+.+..+ ..+++++++.|+++... ...+..+++++++.++.|++.
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4444 55677777766533 22334444 56677777777766432 234455567777777777665
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.04 E-value=0.011 Score=31.47 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=14.8
Q ss_pred CCCEEeCCCccccccCCccccc
Q 048302 472 NIQILKLNSNFFDGIIPMEFGD 493 (545)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~l~~ 493 (545)
+|++|||++|+++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4778888888887 56655654
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.96 E-value=0.047 Score=26.86 Aligned_cols=13 Identities=54% Similarity=0.761 Sum_probs=5.0
Q ss_pred CCCeeeCCCCccc
Q 048302 520 QLQFLDLSHNNLS 532 (545)
Q Consensus 520 ~L~~L~l~~n~l~ 532 (545)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.84 E-value=0.0025 Score=56.14 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=45.9
Q ss_pred CCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCE
Q 048302 109 SNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQD 188 (545)
Q Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 188 (545)
......+.||++.|++. .+-..|+.++.|..|+++.|.+. .+|..++....++++++.+|..+ ..|.+++..+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33444555555555543 23334444555555555555555 45555555555555555555554 45555556666666
Q ss_pred EEccCCcCc
Q 048302 189 LGLSDNLLS 197 (545)
Q Consensus 189 L~l~~n~~~ 197 (545)
++..++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 655555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=0.028 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=16.0
Q ss_pred CCEEEcccccCCccCCccccCCCCCCEEEeecC
Q 048302 138 LETLSLRSNSFTGEMPSELGDIKQLKSLDFSGN 170 (545)
Q Consensus 138 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 170 (545)
++.+|-+++.|...--+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 455555555554333333444445555555444
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=0.05 Score=47.22 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=44.7
Q ss_pred CCCeEeccCccCcccCChhhhccCCCCEEEccCCcC-ccccccccc-ccCCCCEEeCCCcc-ccccCCcccccCCCCCEE
Q 048302 424 NLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNML-TGQIPKKIG-NLTNIQILKLNSNF-FDGIIPMEFGDCISLNTL 500 (545)
Q Consensus 424 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L 500 (545)
.++.++-++..+...-.+.+.+++.++.|.+.+|.- .+.-.+.++ ..++|+.|+|++|+ |+...-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345566666665555445556666666666666642 211111111 24566777777663 444444556666666666
Q ss_pred eCCCCc
Q 048302 501 DLGNNN 506 (545)
Q Consensus 501 ~L~~n~ 506 (545)
.+.+=.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 666543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.04 E-value=0.33 Score=26.86 Aligned_cols=21 Identities=52% Similarity=0.763 Sum_probs=11.3
Q ss_pred CCCCEEEccCCcCccccChhhh
Q 048302 184 TQLQDLGLSDNLLSGSLPVSLF 205 (545)
Q Consensus 184 ~~L~~L~l~~n~~~~~~~~~~~ 205 (545)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666555 4554433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.04 E-value=0.33 Score=26.86 Aligned_cols=21 Identities=52% Similarity=0.763 Sum_probs=11.3
Q ss_pred CCCCEEEccCCcCccccChhhh
Q 048302 184 TQLQDLGLSDNLLSGSLPVSLF 205 (545)
Q Consensus 184 ~~L~~L~l~~n~~~~~~~~~~~ 205 (545)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666555 4554433
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.78 E-value=0.31 Score=26.97 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=11.5
Q ss_pred CCCCeeeCCCCcccccCCCC
Q 048302 519 TQLQFLDLSHNNLSGPIPSK 538 (545)
Q Consensus 519 ~~L~~L~l~~n~l~~~ip~~ 538 (545)
++|+.|++++|++. .||..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 55543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.78 E-value=0.31 Score=26.97 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=11.5
Q ss_pred CCCCeeeCCCCcccccCCCC
Q 048302 519 TQLQFLDLSHNNLSGPIPSK 538 (545)
Q Consensus 519 ~~L~~L~l~~n~l~~~ip~~ 538 (545)
++|+.|++++|++. .||..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 55543
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.64 E-value=0.0035 Score=63.63 Aligned_cols=185 Identities=31% Similarity=0.314 Sum_probs=106.0
Q ss_pred CCEEECCCCCCCcc----CCcccCCCCCCCEEeCCCCcCcccCC----cccCCC-CCCCEEEcccccCCcc----CCccc
Q 048302 90 LRILDLSKNLLFGQ----LSPQVSNLKRLKMLSLGENQLSGSVP----SQLGLL-TRLETLSLRSNSFTGE----MPSEL 156 (545)
Q Consensus 90 L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~~~~~----~p~~l 156 (545)
+..+.|.+|.+... +...+.....|..|++++|.+.+.-. ..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655432 22334556666667777666652211 111222 3456666666666532 34445
Q ss_pred cCCCCCCEEEeecCCCCc----cCCcc----cCCCCCCCEEEccCCcCcccc---ChhhhhCCCC-CCEEEccCCcCccc
Q 048302 157 GDIKQLKSLDFSGNGLNG----TFPSR----LGDLTQLQDLGLSDNLLSGSL---PVSLFTNLQS-LSYLDVSNNLLSGN 224 (545)
Q Consensus 157 ~~l~~L~~L~l~~n~l~~----~~~~~----l~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~-L~~L~l~~n~~~~~ 224 (545)
.....++.++++.|.+.. .++.. +....++++|++.+|.++... -...+...+. ++.+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556677777777776531 12222 334677888888888765211 1123344445 66688888877643
Q ss_pred ----CCcccccc-CCCCceecccccccccCC----cCCCCCCCCCEEEccCCcCcccCh
Q 048302 225 ----IPPEIGNL-KKLSDLYLGINQFTGSIP----AELGNCRNLKAVVLSLNALSGSLP 274 (545)
Q Consensus 225 ----~~~~l~~l-~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~ 274 (545)
....+..+ ..+++++++.|.+...-. ..+..++.++.+.++.|.+.....
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 22334444 577888999888875433 345567788899998888765433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.60 E-value=0.17 Score=27.42 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=4.8
Q ss_pred CCCEEeCCCCccc
Q 048302 496 SLNTLDLGNNNLN 508 (545)
Q Consensus 496 ~L~~L~L~~n~l~ 508 (545)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.71 E-value=0.022 Score=50.37 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=36.5
Q ss_pred CCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 048302 422 SENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLD 501 (545)
Q Consensus 422 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 501 (545)
....+.||++.|++. ..-..++-++.|..|+++.|++. ..|..+.....+..+++-.|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344444555444432 11112333334444455544444 34444444444444444444443 3444444455555555
Q ss_pred CCCCcc
Q 048302 502 LGNNNL 507 (545)
Q Consensus 502 L~~n~l 507 (545)
+.+|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 554443
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.94 E-value=2.1 Score=23.67 Aligned_cols=18 Identities=33% Similarity=0.635 Sum_probs=12.8
Q ss_pred CCCCeeeCCCCcccccCCC
Q 048302 519 TQLQFLDLSHNNLSGPIPS 537 (545)
Q Consensus 519 ~~L~~L~l~~n~l~~~ip~ 537 (545)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45777777777777 6665
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.54 E-value=14 Score=36.89 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCC---CCCCCCEEEccCCcCcccChhhhccc
Q 048302 208 LQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELG---NCRNLKAVVLSLNALSGSLPEQLAEL 280 (545)
Q Consensus 208 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~l~~l 280 (545)
-+.+++++++.|.+....|..+..-. --+.++.+..+......+. .-..+.+++++.|.....+|..+..+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~ 237 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKK 237 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHh
Confidence 45688999999988776665554321 1155556655533221111 12357888999988888887766544
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.76 E-value=3.8 Score=23.09 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=8.0
Q ss_pred CCCCEEeCCCcccc
Q 048302 471 TNIQILKLNSNFFD 484 (545)
Q Consensus 471 ~~L~~L~Ls~n~l~ 484 (545)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.95 E-value=2.4 Score=42.96 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=35.9
Q ss_pred ccCCCCEEEccCCcCccc--ccccccccCCCCEEeCCCc--cccccCCccccc--CCCCCEEeCCCCccccc
Q 048302 445 NAVALEELDLSSNMLTGQ--IPKKIGNLTNIQILKLNSN--FFDGIIPMEFGD--CISLNTLDLGNNNLNGS 510 (545)
Q Consensus 445 ~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~ 510 (545)
+.+.+..+.|++|++... +..--...|+|+.|+|++| .+... .++.+ ...|++|.+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 345566666666665422 1112234577788888887 33221 22222 24678888888887653
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.92 E-value=5.9 Score=21.99 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=9.3
Q ss_pred CCCCEEeCCCCccc
Q 048302 495 ISLNTLDLGNNNLN 508 (545)
Q Consensus 495 ~~L~~L~L~~n~l~ 508 (545)
++|+.|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46667777777665
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.74 E-value=16 Score=20.03 Aligned_cols=13 Identities=38% Similarity=0.337 Sum_probs=10.1
Q ss_pred CCCCCeeeCCCCc
Q 048302 518 LTQLQFLDLSHNN 530 (545)
Q Consensus 518 l~~L~~L~l~~n~ 530 (545)
+++|+.|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888886
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.47 E-value=12 Score=38.10 Aligned_cols=68 Identities=25% Similarity=0.160 Sum_probs=45.1
Q ss_pred cccCCCCEEeCCCccccccCC--cccccCCCCCEEeCCCCccccccccccc--CCCCCCeeeCCCCcccccC
Q 048302 468 GNLTNIQILKLNSNFFDGIIP--MEFGDCISLNTLDLGNNNLNGSIPEKIA--DLTQLQFLDLSHNNLSGPI 535 (545)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~i 535 (545)
.+.+.+..++|++|++..... .--..-++|..|+|++|...-.....+. +...|++|.+.|||+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 356788899999999864311 1123357999999999932211112222 3457899999999998653
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.87 E-value=27 Score=35.04 Aligned_cols=197 Identities=17% Similarity=0.067 Sum_probs=95.6
Q ss_pred CCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccc---cCCCCCCEEEcccCeeeeccCccccCcc---
Q 048302 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVF---DRCTNLSELVLVNNRISGSIPEYISELP--- 400 (545)
Q Consensus 327 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~--- 400 (545)
.+.+++++++.|.+....|..+.+-..= +.++.|..++.....+ ..=..+.+++++.|.....+|.......
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 4567788888888877766655443221 5566665543221111 1113467778887777666665543332
Q ss_pred -ccEEEccCCccee---ecChhhhcCCCCCeEeccCccCcc--------cCChhhhccCCCCEEEccCCcCcccccccc-
Q 048302 401 -LKVLDLQYNNFTG---VIPVSLWNSENLMEFNAASNLLEG--------SLSWEIGNAVALEELDLSSNMLTGQIPKKI- 467 (545)
Q Consensus 401 -L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~~~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~- 467 (545)
++.++.+...+.- .-+.....-+++...+++.|..+. ..-+.++.-+++ +|++..++.-.+-+..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 5666666554431 122223334566666666664421 111223333455 66666665432211111
Q ss_pred cc-----cCCCCEEeCCCcccccc--CCcccccCCCCCEEeCCCCccccccccc--ccCCCCCCeeeCC
Q 048302 468 GN-----LTNIQILKLNSNFFDGI--IPMEFGDCISLNTLDLGNNNLNGSIPEK--IADLTQLQFLDLS 527 (545)
Q Consensus 468 ~~-----l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~ 527 (545)
-. -..=-.+|++.|...+. ...+..+ ..+++|..++|...+..-.. +..-++.+.+++.
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~ag 388 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAG 388 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccccccceeecccccccccc
Confidence 00 00112456666655432 1111222 34777777777766544322 2333455555443
No 93
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=25.07 E-value=43 Score=16.57 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=4.1
Q ss_pred ChhhHHHHH
Q 048302 1 MAKLLLCLM 9 (545)
Q Consensus 1 ~~~~~~~~~ 9 (545)
|++.+..++
T Consensus 1 MMk~vIIlv 9 (19)
T PF13956_consen 1 MMKLVIILV 9 (19)
T ss_pred CceehHHHH
Confidence 455444433
Done!