Query 048302
Match_columns 545
No_of_seqs 451 out of 4094
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.7E-70 1.6E-74 592.1 45.1 516 22-538 8-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-58 7.5E-63 500.6 39.7 465 65-533 201-742 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.2E-55 1.8E-59 463.9 43.5 469 65-536 34-564 (606)
4 4eco_A Uncharacterized protein 100.0 9.6E-57 3.3E-61 476.8 21.8 451 23-508 27-600 (636)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-53 4.7E-58 452.9 41.7 454 79-538 26-542 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 3.5E-54 1.2E-58 464.1 32.8 469 23-531 266-863 (876)
7 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-52 2.6E-56 445.3 47.7 469 65-534 26-599 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-52 6.4E-57 444.2 39.7 460 65-536 33-562 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-51 1.5E-55 439.5 44.4 472 64-536 49-626 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 6.6E-51 2.3E-55 432.3 41.4 459 69-541 16-542 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 7.5E-50 2.6E-54 421.3 40.3 464 65-538 29-537 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-50 5.9E-55 443.1 34.9 482 54-540 14-547 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.4E-48 4.6E-53 411.7 36.6 440 65-513 53-536 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-48 9.3E-53 425.7 38.5 461 70-539 10-524 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-49 1.9E-53 412.6 30.5 470 53-536 3-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 9.8E-48 3.4E-52 400.2 24.6 451 67-536 3-485 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 9.6E-47 3.3E-51 395.6 30.0 467 59-540 2-494 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 3.8E-46 1.3E-50 401.7 27.3 413 88-537 323-845 (876)
19 4eco_A Uncharacterized protein 100.0 1E-46 3.6E-51 399.8 22.6 431 88-533 81-601 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 8.6E-45 2.9E-49 378.0 21.1 434 64-512 21-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-42 6.6E-47 369.6 39.3 438 89-535 53-583 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9E-44 3.1E-48 373.4 26.5 453 65-536 32-514 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-41 2.1E-45 358.0 39.6 426 112-541 52-564 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 8.2E-42 2.8E-46 349.6 29.3 384 114-537 12-413 (455)
25 3v47_A TOLL-like receptor 5B a 100.0 2.6E-41 8.7E-46 345.9 31.9 368 88-512 30-412 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-41 1.5E-45 353.0 22.8 434 64-512 52-514 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 2.1E-40 7.2E-45 336.3 26.7 395 87-538 10-435 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 9.4E-41 3.2E-45 323.1 20.6 245 23-270 3-257 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 1.4E-39 4.7E-44 330.3 26.3 398 64-517 11-438 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-38 7.7E-43 321.7 27.7 364 79-542 33-397 (457)
31 1o6v_A Internalin A; bacterial 100.0 3.2E-37 1.1E-41 315.8 32.2 345 86-485 44-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 3.5E-37 1.2E-41 315.5 31.6 346 109-509 43-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-37 1.2E-41 313.0 26.6 344 64-491 42-394 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 4.1E-36 1.4E-40 309.0 28.8 303 88-391 32-335 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 9.7E-36 3.3E-40 306.2 29.7 319 91-436 14-333 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.1E-35 7.2E-40 295.5 28.3 283 43-389 2-285 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.2E-34 7.7E-39 303.6 30.0 347 42-460 7-358 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 7.5E-34 2.6E-38 284.2 29.4 309 159-509 44-353 (390)
39 4fmz_A Internalin; leucine ric 100.0 2.8E-33 9.5E-38 275.6 29.8 307 156-532 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 3.1E-33 1.1E-37 275.3 27.9 308 131-508 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 4.3E-33 1.5E-37 293.7 29.5 309 159-509 50-359 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 6.7E-36 2.3E-40 306.3 0.1 205 329-533 200-441 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-32 5.2E-37 265.5 20.3 248 284-534 54-307 (313)
44 4fcg_A Uncharacterized protein 100.0 7E-33 2.4E-37 269.4 15.4 264 24-316 25-313 (328)
45 1xku_A Decorin; proteoglycan, 100.0 1E-30 3.5E-35 255.3 30.8 270 88-387 52-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 3.5E-31 1.2E-35 258.5 27.5 244 89-366 32-277 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 7.9E-35 2.7E-39 298.3 1.6 361 136-534 3-413 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-31 1E-35 259.1 26.4 249 113-396 34-284 (332)
49 2ft3_A Biglycan; proteoglycan, 100.0 6E-31 2.1E-35 257.0 26.6 287 67-387 36-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 1.3E-34 4.6E-39 306.3 -4.5 445 53-526 41-545 (592)
51 3ogk_B Coronatine-insensitive 100.0 2.7E-32 9.3E-37 288.5 0.7 407 105-534 66-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 7.2E-30 2.5E-34 251.6 14.5 289 47-368 23-317 (353)
53 2z66_A Variable lymphocyte rec 100.0 4.4E-28 1.5E-32 233.9 20.9 248 92-390 11-262 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 1.7E-28 5.7E-33 241.9 17.9 279 231-536 29-318 (353)
55 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.7E-32 231.2 22.6 230 304-534 28-263 (306)
56 4fcg_A Uncharacterized protein 100.0 4.9E-28 1.7E-32 235.3 19.5 225 303-532 80-314 (328)
57 2p1m_B Transport inhibitor res 100.0 3.8E-32 1.3E-36 287.6 -10.9 448 53-530 34-542 (594)
58 3zyj_A Leucine-rich repeat-con 100.0 5.4E-27 1.8E-31 238.1 26.5 247 90-389 45-292 (440)
59 3zyi_A Leucine-rich repeat-con 100.0 4.9E-27 1.7E-31 239.2 26.0 247 90-389 56-303 (452)
60 3zyi_A Leucine-rich repeat-con 100.0 7.8E-27 2.7E-31 237.8 26.3 229 304-534 75-305 (452)
61 3zyj_A Leucine-rich repeat-con 100.0 1.6E-26 5.3E-31 234.7 26.1 228 304-533 64-293 (440)
62 1ozn_A Reticulon 4 receptor; N 100.0 5.3E-27 1.8E-31 223.9 21.1 225 115-390 14-239 (285)
63 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.5E-31 221.9 21.6 253 283-539 14-268 (285)
64 2o6q_A Variable lymphocyte rec 99.9 3.4E-26 1.1E-30 216.3 22.3 218 51-272 2-220 (270)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-26 9E-31 239.7 23.2 284 45-396 13-304 (622)
66 1wwl_A Monocyte differentiatio 99.9 1.2E-28 4.2E-33 238.2 2.9 204 134-366 93-310 (312)
67 2p1m_B Transport inhibitor res 99.9 1.6E-29 5.6E-34 267.4 -5.4 421 91-533 46-520 (594)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.1E-32 229.3 10.0 264 237-537 14-281 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.9E-29 227.4 29.0 114 89-222 41-154 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.9 4.9E-27 1.7E-31 227.5 9.7 225 300-537 30-256 (317)
71 1wwl_A Monocyte differentiatio 99.9 1.1E-27 3.6E-32 231.6 4.0 258 229-533 39-310 (312)
72 2z62_A TOLL-like receptor 4, v 99.9 6.6E-25 2.3E-29 208.3 21.5 208 305-536 29-241 (276)
73 3oja_A Leucine-rich immune mol 99.9 9.1E-26 3.1E-30 231.1 15.6 232 282-527 36-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 4.7E-26 1.6E-30 233.2 11.6 223 302-537 32-256 (487)
75 2o6q_A Variable lymphocyte rec 99.9 1.3E-23 4.5E-28 198.5 21.7 203 304-509 16-219 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.9E-28 199.7 20.8 181 88-270 28-213 (276)
77 3rfs_A Internalin B, repeat mo 99.9 1E-23 3.6E-28 199.3 16.0 208 300-518 37-245 (272)
78 1p9a_G Platelet glycoprotein I 99.9 5E-23 1.7E-27 196.1 20.5 202 300-508 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.5E-28 198.0 16.7 181 85-270 38-218 (272)
80 3m19_A Variable lymphocyte rec 99.9 6.8E-23 2.3E-27 191.3 18.8 189 52-245 3-191 (251)
81 2ca6_A RAN GTPase-activating p 99.9 8.4E-25 2.9E-29 218.1 5.9 241 296-536 24-320 (386)
82 3goz_A Leucine-rich repeat-con 99.9 3.2E-25 1.1E-29 218.9 2.1 128 262-389 3-151 (362)
83 2ast_B S-phase kinase-associat 99.9 3.2E-25 1.1E-29 217.0 0.9 211 53-268 36-258 (336)
84 1p9a_G Platelet glycoprotein I 99.9 2.9E-22 1E-26 190.8 21.3 130 89-222 32-161 (290)
85 2ast_B S-phase kinase-associat 99.9 8.9E-24 3E-28 206.7 9.5 232 304-540 70-314 (336)
86 4glp_A Monocyte differentiatio 99.9 8.5E-23 2.9E-27 197.1 14.5 181 89-270 65-264 (310)
87 3goz_A Leucine-rich repeat-con 99.9 5.3E-24 1.8E-28 210.2 5.9 156 238-393 3-184 (362)
88 3m19_A Variable lymphocyte rec 99.9 7.5E-22 2.6E-26 184.2 19.4 181 88-272 14-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 3.4E-22 1.2E-26 185.2 16.9 179 88-270 31-218 (239)
90 2ca6_A RAN GTPase-activating p 99.9 3.3E-24 1.1E-28 213.8 3.2 255 224-512 23-320 (386)
91 2xwt_C Thyrotropin receptor; s 99.9 5.3E-22 1.8E-26 183.9 16.0 196 65-267 32-236 (239)
92 4glp_A Monocyte differentiatio 99.9 2.1E-22 7E-27 194.4 13.2 206 304-533 91-308 (310)
93 1h6u_A Internalin H; cell adhe 99.9 2.3E-21 8E-26 186.4 17.2 193 301-509 38-231 (308)
94 2o6s_A Variable lymphocyte rec 99.9 2.8E-21 9.4E-26 175.0 16.6 185 53-258 6-190 (208)
95 1h6u_A Internalin H; cell adhe 99.9 4E-21 1.4E-25 184.8 17.2 194 324-533 37-231 (308)
96 3cvr_A Invasion plasmid antige 99.8 5.7E-21 1.9E-25 197.0 15.0 208 45-281 34-254 (571)
97 4ay9_X Follicle-stimulating ho 99.8 3E-20 1E-24 182.2 18.0 202 54-270 9-215 (350)
98 2o6s_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 166.9 14.9 174 91-275 10-183 (208)
99 3e6j_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 166.6 16.8 167 43-224 8-174 (229)
100 4ay9_X Follicle-stimulating ho 99.8 3.8E-19 1.3E-23 174.4 20.7 103 92-197 13-117 (350)
101 3cvr_A Invasion plasmid antige 99.8 5.4E-20 1.8E-24 189.8 14.9 187 305-519 60-254 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.5E-23 158.4 16.2 133 137-270 33-165 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4.2E-23 158.6 15.5 152 355-509 14-167 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 1.5E-18 5E-23 158.1 15.8 134 88-222 32-165 (220)
105 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.4E-23 170.7 15.2 174 69-246 23-202 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 4E-18 1.4E-22 155.2 16.4 134 138-272 34-168 (220)
107 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.2E-23 165.2 14.0 172 85-271 43-214 (291)
108 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.8E-23 164.5 14.1 172 324-509 42-214 (291)
109 3e6j_A Variable lymphocyte rec 99.8 8.6E-18 2.9E-22 154.1 17.7 154 115-273 22-175 (229)
110 1m9s_A Internalin B; cell inva 99.8 3.2E-18 1.1E-22 178.5 14.9 149 109-270 40-188 (605)
111 2xot_A Amphoterin-induced prot 99.8 4.6E-18 1.6E-22 167.4 15.0 175 331-508 21-202 (361)
112 1m9s_A Internalin B; cell inva 99.8 6.5E-18 2.2E-22 176.2 16.8 172 300-485 39-211 (605)
113 4ezg_A Putative uncharacterize 99.7 4.6E-18 1.6E-22 152.1 11.3 152 110-270 42-194 (197)
114 4ezg_A Putative uncharacterize 99.7 9.8E-18 3.3E-22 150.0 13.3 154 85-247 41-195 (197)
115 4b8c_D Glucose-repressible alc 99.7 3.9E-19 1.3E-23 190.2 2.0 231 24-267 130-369 (727)
116 1xeu_A Internalin C; cellular 99.7 6.3E-18 2.2E-22 158.4 7.7 168 88-271 19-186 (263)
117 3sb4_A Hypothetical leucine ri 99.7 3.7E-17 1.3E-21 158.8 11.8 221 303-526 100-328 (329)
118 1dce_A Protein (RAB geranylger 99.7 3.2E-19 1.1E-23 185.0 -3.3 194 326-525 347-566 (567)
119 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.8E-21 142.3 12.7 132 379-512 11-143 (192)
120 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.6E-21 148.7 13.5 165 68-248 23-187 (263)
121 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.6E-21 138.1 10.0 135 401-538 26-165 (168)
122 2ell_A Acidic leucine-rich nuc 99.7 3.5E-16 1.2E-20 136.0 11.7 108 88-197 24-133 (168)
123 1w8a_A SLIT protein; signaling 99.7 8.7E-16 3E-20 136.5 14.3 131 68-201 12-143 (192)
124 3sb4_A Hypothetical leucine ri 99.7 8.3E-17 2.8E-21 156.3 7.4 101 303-405 225-327 (329)
125 4b8c_D Glucose-repressible alc 99.7 6.5E-17 2.2E-21 173.0 6.8 179 151-340 215-403 (727)
126 1dce_A Protein (RAB geranylger 99.6 3.6E-18 1.2E-22 177.1 -3.8 183 349-537 346-551 (567)
127 2je0_A Acidic leucine-rich nuc 99.6 3.2E-16 1.1E-20 133.3 8.8 127 88-217 17-148 (149)
128 2je0_A Acidic leucine-rich nuc 99.6 6.5E-16 2.2E-20 131.4 9.6 126 401-528 19-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 131.1 13.7 133 54-199 7-139 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 3.2E-15 1.1E-19 132.8 13.6 127 379-508 13-139 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2.3E-15 7.8E-20 132.1 12.5 129 379-509 10-138 (177)
132 4fs7_A Uncharacterized protein 99.6 7.5E-14 2.6E-18 139.0 23.9 329 106-500 65-393 (394)
133 2wfh_A SLIT homolog 2 protein 99.6 7E-15 2.4E-19 130.6 14.1 127 91-222 13-139 (193)
134 4fs7_A Uncharacterized protein 99.6 6.1E-14 2.1E-18 139.7 22.3 334 124-524 59-393 (394)
135 4fdw_A Leucine rich hypothetic 99.6 1.4E-13 5E-18 136.3 24.4 63 323-388 295-357 (401)
136 4fdw_A Leucine rich hypothetic 99.6 4.8E-14 1.7E-18 139.7 20.9 264 233-531 113-382 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.7E-19 127.6 9.0 131 84-220 15-151 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.9E-19 126.7 9.0 133 107-245 14-152 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 139.5 -3.5 126 401-533 50-186 (198)
140 1ds9_A Outer arm dynein; leuci 99.5 1E-16 3.6E-21 143.4 -8.5 131 88-224 18-155 (198)
141 3g39_A Variable lymphocyte rec 99.5 2.5E-13 8.5E-18 117.9 10.6 107 401-510 11-117 (170)
142 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 113.2 12.8 86 112-197 30-115 (170)
143 4gt6_A Cell surface protein; l 99.4 6.6E-11 2.2E-15 117.7 26.2 323 124-531 51-390 (394)
144 4gt6_A Cell surface protein; l 99.4 6.2E-11 2.1E-15 117.9 25.8 331 105-483 56-390 (394)
145 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 112.2 12.8 103 92-197 16-118 (174)
146 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 112.5 12.3 104 115-222 15-118 (174)
147 3un9_A NLR family member X1; l 99.4 5.4E-14 1.8E-18 138.1 1.0 132 401-532 128-283 (372)
148 3un9_A NLR family member X1; l 99.3 1.9E-13 6.5E-18 134.1 1.7 134 401-534 103-254 (372)
149 2ifg_A High affinity nerve gro 99.2 4E-11 1.4E-15 117.2 9.3 66 84-149 27-93 (347)
150 2ifg_A High affinity nerve gro 99.2 7.8E-11 2.7E-15 115.1 11.1 104 403-509 12-117 (347)
151 4h09_A Hypothetical leucine ri 99.2 1.4E-08 4.8E-13 100.3 26.0 81 108-193 42-122 (379)
152 4h09_A Hypothetical leucine ri 99.1 2.5E-08 8.7E-13 98.4 25.4 143 371-518 212-355 (379)
153 2ra8_A Uncharacterized protein 98.9 2.7E-10 9.3E-15 110.7 3.8 154 133-290 169-340 (362)
154 2ra8_A Uncharacterized protein 98.9 7.2E-10 2.5E-14 107.7 6.4 128 401-530 195-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 6.6E-09 2.2E-13 91.1 5.0 116 417-532 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 8.8E-09 3E-13 90.3 2.1 89 420-508 62-164 (185)
157 3rw6_A Nuclear RNA export fact 98.6 2.1E-08 7.3E-13 92.2 3.1 80 444-525 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.4 8E-08 2.7E-12 81.9 1.8 84 423-506 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 4.3E-07 1.5E-11 83.5 5.6 81 419-501 166-257 (267)
160 3e4g_A ATP synthase subunit S, 98.3 2.2E-07 7.4E-12 79.2 2.0 82 401-482 63-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.5E-05 5E-10 69.3 4.7 112 420-531 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 7.1E-05 2.4E-09 64.9 4.8 91 418-508 65-170 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0028 9.6E-08 51.2 6.3 57 450-508 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0055 1.9E-07 49.4 6.5 57 426-484 11-68 (130)
165 2lz0_A Uncharacterized protein 53.8 42 0.0014 24.9 6.6 41 128-169 12-52 (100)
166 2lz0_A Uncharacterized protein 48.9 54 0.0018 24.2 6.6 46 100-146 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-70 Score=592.12 Aligned_cols=516 Identities=37% Similarity=0.563 Sum_probs=384.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccccceeecCCcEEEEEeCCCCCccc---cC-----------------
Q 048302 22 DEPKQERRSLVHFKNSLQNPQVLSGWNKTTRHCDWFGVKCRHSRVVSLVIQTQSLKGP---VS----------------- 81 (545)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~w~~~~c~~~~v~~l~l~~~~~~~~---~~----------------- 81 (545)
+..++|++||++||+++.||..+++|+.+++||.|.||.|+..+|++++++++.+.|. ++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~ 87 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 87 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTS
T ss_pred cCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCC
Confidence 3457899999999999988878899998889999999999977999999999988875 33
Q ss_pred ------ccCCCCCCCCEEECCCCCCCccCCc--ccCCCCCCCEEeCCCCcCcccCCccc-CCCCC---------------
Q 048302 82 ------PFLYNLSSLRILDLSKNLLFGQLSP--QVSNLKRLKMLSLGENQLSGSVPSQL-GLLTR--------------- 137 (545)
Q Consensus 82 ------~~l~~l~~L~~L~ls~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~--------------- 137 (545)
..+.++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++
T Consensus 88 ~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167 (768)
T ss_dssp CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence 4677888899999999988877777 77788888888888777765555443 33333
Q ss_pred ----------------------------------CCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCC
Q 048302 138 ----------------------------------LETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDL 183 (545)
Q Consensus 138 ----------------------------------L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 183 (545)
|++|++++|.+.+.+|. ++++++|++|++++|.+.+..|..++.+
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 246 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 246 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTC
T ss_pred ChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcC
Confidence 44444444444433443 5555666666666666655555555555
Q ss_pred CCCCEEEccCCcCccccC----------------------hhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecc
Q 048302 184 TQLQDLGLSDNLLSGSLP----------------------VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLG 241 (545)
Q Consensus 184 ~~L~~L~l~~n~~~~~~~----------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 241 (545)
++|++|++++|.+++.+| ......+++|++|++++|.+++.+|..++.+++|++|+++
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 555555555555443322 1111112455555555555555555555555666666666
Q ss_pred cccccccCCcC-CCCCCCCCEEEccCCcCcccChhhhccc--c--------------------------ccEEEccCCCC
Q 048302 242 INQFTGSIPAE-LGNCRNLKAVVLSLNALSGSLPEQLAEL--Q--------------------------IFTFSAGMNQL 292 (545)
Q Consensus 242 ~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~--------------------------l~~l~l~~~~~ 292 (545)
+|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..+ . ++.+++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 66655555543 5556666666666666655555544433 1 34444444444
Q ss_pred CCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccc
Q 048302 293 SGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVF 372 (545)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 372 (545)
.+.+|.++..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++.+..|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 45556666667777777777777777777777777777778887787777778888888888888888888888888888
Q ss_pred cCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhh-------
Q 048302 373 DRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIG------- 444 (545)
Q Consensus 373 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~------- 444 (545)
..+++|++|++++|++++.+|.++..++ |++|++++|++.+.+|..+..+++|+.|++++|++.|.+|..+.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 8888899999999988888888888877 99999999999989999999999999999999988877775442
Q ss_pred ---------------------------------------------------------------ccCCCCEEEccCCcCcc
Q 048302 445 ---------------------------------------------------------------NAVALEELDLSSNMLTG 461 (545)
Q Consensus 445 ---------------------------------------------------------------~~~~L~~L~L~~n~l~~ 461 (545)
.+++|++|++++|++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 24678899999999999
Q ss_pred cccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCC
Q 048302 462 QIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSK 538 (545)
Q Consensus 462 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~ 538 (545)
.+|..++.++.|++|+|++|.+++.+|..+.++++|++|+|++|+++|.+|..+..+++|++|++++|+++|.||+.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-58 Score=500.62 Aligned_cols=465 Identities=35% Similarity=0.540 Sum_probs=403.0
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
+++.++++++.+.+.++. +.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.. .+++|++|+++
T Consensus 201 ~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~ 277 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277 (768)
T ss_dssp TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECC
T ss_pred cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECc
Confidence 677788888888776666 888888888888888888888888888888888888888887776654 78888888888
Q ss_pred cccCCccCCccccCC-CCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcc
Q 048302 145 SNSFTGEMPSELGDI-KQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSG 223 (545)
Q Consensus 145 ~n~~~~~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 223 (545)
+|.+.+.+|..+... ++|++|++++|.+.+..|..++++++|++|++++|.+++.+|...+.++++|++|++++|.+++
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 888888888888775 9999999999999888999999999999999999999888887778899999999999999988
Q ss_pred cCCccccccC-CCCceecccccccccCCcCCCC--CCCCCEEEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCccc
Q 048302 224 NIPPEIGNLK-KLSDLYLGINQFTGSIPAELGN--CRNLKAVVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSW 299 (545)
Q Consensus 224 ~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~ 299 (545)
.+|..+..++ +|++|++++|.+++.++..+.. +++|++|++++|.+.+.+|..+..+. ++.++++.|.+.+.+|..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 8898888887 8999999999888887777766 77888888888888888888888877 888888888888888888
Q ss_pred cCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCC
Q 048302 300 LGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 379 (545)
+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+..+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred EEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhh---------------------------------------
Q 048302 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSL--------------------------------------- 419 (545)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~--------------------------------------- 419 (545)
+|++++|++.+.+|..+..++ |+.|++++|++.+.+|..+
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 888888888888888888777 8888888888877666543
Q ss_pred -------------------------------hcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCccccccccc
Q 048302 420 -------------------------------WNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIG 468 (545)
Q Consensus 420 -------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 468 (545)
..+++|+.|++++|++.|.+|..+.+++.|++|+|++|++++.+|..++
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 3356789999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCc-ccc
Q 048302 469 NLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNN-LSG 533 (545)
Q Consensus 469 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~ 533 (545)
.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|.. ..+.++......+|+ +.|
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999999999999999999965 345566677788887 444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-55 Score=463.86 Aligned_cols=469 Identities=19% Similarity=0.167 Sum_probs=417.0
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
.++.++++++.+.+..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 78999999999998888899999999999999999998889999999999999999999998889999999999999999
Q ss_pred cccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCC--EEEccCCcCc
Q 048302 145 SNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLS--YLDVSNNLLS 222 (545)
Q Consensus 145 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~--~L~l~~n~~~ 222 (545)
+|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+ .|++++|.+.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccC
Confidence 99999776788999999999999999998754445556999999999999998 55557889999999 8999999998
Q ss_pred ccCCcccccc---------------------------------------------------CCCCceecccccccccCCc
Q 048302 223 GNIPPEIGNL---------------------------------------------------KKLSDLYLGINQFTGSIPA 251 (545)
Q Consensus 223 ~~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~l~~~~~~ 251 (545)
+..|..+... .+|+.|++++|.+++..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 7666544321 1677888888888877777
Q ss_pred CCCCCCCCCEEEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcC-CCCCCC
Q 048302 252 ELGNCRNLKAVVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPE-IGNCSM 329 (545)
Q Consensus 252 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~ 329 (545)
.+..+++|++|++++|.+. .+|..+..+. ++.+++++|.+.+..+..+..+++|++|++++|.+.+.++.. +..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 8999999999999999988 6777788776 999999999999888888999999999999999988666554 889999
Q ss_pred CCEEEcccCcCccCC--CccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCcc-ccCcc-ccEEE
Q 048302 330 LKCISLSNNKLSGPI--PRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEY-ISELP-LKVLD 405 (545)
Q Consensus 330 L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~-L~~L~ 405 (545)
|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+.. +..++ |+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 999999999998765 778889999999999999999888889999999999999999998776543 66666 99999
Q ss_pred ccCCcceeecChhhhcCCCCCeEeccCccCccc---CChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCcc
Q 048302 406 LQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS---LSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNF 482 (545)
Q Consensus 406 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 482 (545)
+++|.+.+..+..+..+++|+.|++++|++.+. .+..+..+++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 999999988888899999999999999999763 33568889999999999999998888999999999999999999
Q ss_pred ccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCC
Q 048302 483 FDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 483 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip 536 (545)
+++..|..+.++++| +|++++|++++..|..+..+++|+++++++|++.+..+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999 99999999998888888999999999999999998665
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.6e-57 Score=476.83 Aligned_cols=451 Identities=22% Similarity=0.317 Sum_probs=324.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCC---------CCCCCCCCCCccc---cceeecCC-cEEEEEeCCCCCccccCccCCCCCC
Q 048302 23 EPKQERRSLVHFKNSLQNPQV---------LSGWNKTTRHCDW---FGVKCRHS-RVVSLVIQTQSLKGPVSPFLYNLSS 89 (545)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~---------~~~w~~~~~~c~w---~~~~c~~~-~v~~l~l~~~~~~~~~~~~l~~l~~ 89 (545)
....|+.||.+++.++.++.+ ..+|+...++|.| .||.|+.. +|++++++++.+.|.+|+.++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence 345789999999999865522 2479988999999 99999765 9999999999999999999999999
Q ss_pred CCEEECCCCCC------Cc------cCCc---------------------ccC-------------------CCCCCCEE
Q 048302 90 LRILDLSKNLL------FG------QLSP---------------------QVS-------------------NLKRLKML 117 (545)
Q Consensus 90 L~~L~ls~~~~------~~------~~~~---------------------~~~-------------------~l~~L~~L 117 (545)
|++|+|++|.+ .+ .+|. .+. ....++.+
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 99999999965 11 1111 111 11122222
Q ss_pred eCC--CCcCcccCCcccCCCCCCCEEEcccccCCcc-----------------CCcccc--CCCCCCEEEeecCCCCccC
Q 048302 118 SLG--ENQLSGSVPSQLGLLTRLETLSLRSNSFTGE-----------------MPSELG--DIKQLKSLDFSGNGLNGTF 176 (545)
Q Consensus 118 ~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~~~~ 176 (545)
.+. .|++++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 222 356665 677777777777777777777754 677766 7777777777777777777
Q ss_pred CcccCCCCCCCEEEccCCc-Ccc-ccChhhhhCC------CCCCEEEccCCcCcccCCc--cccccCCCCceeccccccc
Q 048302 177 PSRLGDLTQLQDLGLSDNL-LSG-SLPVSLFTNL------QSLSYLDVSNNLLSGNIPP--EIGNLKKLSDLYLGINQFT 246 (545)
Q Consensus 177 ~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~ 246 (545)
|+.++++++|++|++++|+ +++ .+| ..+.++ ++|++|++++|.++ .+|. .++.+++|++|++++|.++
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLK-DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccch-HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 7777777777777777776 665 566 334443 67777777777776 5666 6777777777777777777
Q ss_pred ccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCC-CCEEEccCCcceecCCcCCC
Q 048302 247 GSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQ-MDSLWLYNNQFVGRIPPEIG 325 (545)
Q Consensus 247 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~ 325 (545)
|.+| .+..+++|++|++++|.+. .+|.++..+++ |++|++++|.+. .+|..+.
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred cchh-hhCCCCCCCEEECCCCccc------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 6666 6666677777777776655 34555667777 888999988888 7777776
Q ss_pred CCC--CCCEEEcccCcCccCCCcccc-------CCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCcc-
Q 048302 326 NCS--MLKCISLSNNKLSGPIPRELC-------DSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEY- 395 (545)
Q Consensus 326 ~~~--~L~~L~ls~n~l~~~~~~~~~-------~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~- 395 (545)
..+ +|++|++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|++|++++|+++ .+|..
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHH
Confidence 654 788999999998888887777 6778999999999888766666777888999999999888 44443
Q ss_pred ccCc--------cccEEEccCCcceeecChhhh--cCCCCCeEeccCccCcccCChhhhccCCCCEEEc------cCCcC
Q 048302 396 ISEL--------PLKVLDLQYNNFTGVIPVSLW--NSENLMEFNAASNLLEGSLSWEIGNAVALEELDL------SSNML 459 (545)
Q Consensus 396 ~~~~--------~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L------~~n~l 459 (545)
+... .|+.|++++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|++|++ ++|++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 3222 4777777777777 5666665 77777777777777776 6767777777777777 34556
Q ss_pred cccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccc
Q 048302 460 TGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 460 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
.+.+|..+..+++|++|+|++|.+ +.+|..+. ++|++|++++|++.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 666777777777777777777777 45565544 57777777777655
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-53 Score=452.93 Aligned_cols=454 Identities=23% Similarity=0.232 Sum_probs=344.1
Q ss_pred ccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccC
Q 048302 79 PVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGD 158 (545)
Q Consensus 79 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~ 158 (545)
.+|..+. +++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..|++
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 3454443 37899999999999888999999999999999999999888999999999999999999999888999999
Q ss_pred CCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCC--
Q 048302 159 IKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLS-- 236 (545)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-- 236 (545)
+++|++|++++|.+++..+..++++++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..++.+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 9999999999999998778889999999999999999984 3223345599999999999999988888999999999
Q ss_pred ceecccccccccCCcCCCCCC----------------------------------------------------CCCEEEc
Q 048302 237 DLYLGINQFTGSIPAELGNCR----------------------------------------------------NLKAVVL 264 (545)
Q Consensus 237 ~L~l~~n~l~~~~~~~l~~l~----------------------------------------------------~L~~L~l 264 (545)
.|++++|.+++..+..+.. . +|+.+++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred EEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 8999999999877765543 2 4555556
Q ss_pred cCCcCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccC
Q 048302 265 SLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGP 343 (545)
Q Consensus 265 ~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 343 (545)
++|.+.+..+..+..+. ++.+++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 66666555555555554 666666666665 4555566666666666666666655555666666666666666666544
Q ss_pred CCc-cccCCCCCcEEECcCCcCcccc--cccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecCh-h
Q 048302 344 IPR-ELCDSGSLVEINLDGNMLSGTI--EDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPV-S 418 (545)
Q Consensus 344 ~~~-~~~~~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~-~ 418 (545)
++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+...+ |+.|++++|++.+..+. .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 443 3566677777777777766554 55566777777777777777766666666655 77777777777765443 3
Q ss_pred hhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCccc---ccccccccCCCCEEeCCCccccccCCcccccCC
Q 048302 419 LWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQ---IPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCI 495 (545)
Q Consensus 419 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 495 (545)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..|..|..++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 66777777777777777777777777777777777777777652 224577777777777777777777777777777
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCC
Q 048302 496 SLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSK 538 (545)
Q Consensus 496 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~ 538 (545)
+|++|++++|++++..|..+.+++.| +|++++|++++.+|+.
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence 88888888887777777777777777 7788888777655543
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-54 Score=464.11 Aligned_cols=469 Identities=20% Similarity=0.256 Sum_probs=350.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCCC-----CC--ccc------------cceeecC-CcEEEEEeCCCCCccccCc
Q 048302 23 EPKQERRSLVHFKNSLQNPQVLSGWNKTT-----RH--CDW------------FGVKCRH-SRVVSLVIQTQSLKGPVSP 82 (545)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~~~c~~-~~v~~l~l~~~~~~~~~~~ 82 (545)
...+|+.||++||+++.+| +|+... ++ |.| .||.|+. .+|++++++++.+.|.+|+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred cchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 4467999999999999876 775554 55 999 9999985 5999999999999999999
Q ss_pred cCCCCCCCCEEEC-CCCCCCccCCccc---------------------------------------------------CC
Q 048302 83 FLYNLSSLRILDL-SKNLLFGQLSPQV---------------------------------------------------SN 110 (545)
Q Consensus 83 ~l~~l~~L~~L~l-s~~~~~~~~~~~~---------------------------------------------------~~ 110 (545)
.++++++|++|+| ++|.+.|..+... ..
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 8887655422110 11
Q ss_pred CCCCCEEeCCC--CcCcccCCcccCCCCCCCEEEcccccCCc-----------------cCCcccc--CCCCCCEEEeec
Q 048302 111 LKRLKMLSLGE--NQLSGSVPSQLGLLTRLETLSLRSNSFTG-----------------EMPSELG--DIKQLKSLDFSG 169 (545)
Q Consensus 111 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L~~L~l~~ 169 (545)
...++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|..++ ++++|++|++++
T Consensus 422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 22333333433 66665 77778888888888888888876 2777766 788888888888
Q ss_pred CCCCccCCcccCCCCCCCEEEccCCc-Ccc-ccChhhhhC-------CCCCCEEEccCCcCcccCCc--cccccCCCCce
Q 048302 170 NGLNGTFPSRLGDLTQLQDLGLSDNL-LSG-SLPVSLFTN-------LQSLSYLDVSNNLLSGNIPP--EIGNLKKLSDL 238 (545)
Q Consensus 170 n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~-------l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L 238 (545)
|.+.+.+|..++++++|++|++++|+ +++ .+| ..+.. +++|++|++++|.++ .+|. .++++++|+.|
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 88777788778888888888888887 776 566 33333 347888888888777 6776 77778888888
Q ss_pred ecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCC-CCEEEccCCcce
Q 048302 239 YLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQ-MDSLWLYNNQFV 317 (545)
Q Consensus 239 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~ 317 (545)
++++|.++ .+| .+..+++|+.|++++|.+. .+|.++..+++ |+.|++++|.+.
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~------------------------~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE------------------------EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS------------------------CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc------------------------cchHHHhhccccCCEEECcCCCCC
Confidence 88888777 666 6777777888877777765 34555666777 888888888887
Q ss_pred ecCCcCCCCCCC--CCEEEcccCcCccCCCccc---c--CCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeee
Q 048302 318 GRIPPEIGNCSM--LKCISLSNNKLSGPIPREL---C--DSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISG 390 (545)
Q Consensus 318 ~~~~~~~~~~~~--L~~L~ls~n~l~~~~~~~~---~--~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 390 (545)
.+|..+...+. |+.|++++|.+.+.+|... . ..++|++|++++|.+.......+..+++|+.|++++|++.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-
Confidence 67777766544 8889999988887655322 2 2358889999999888665556668889999999999888
Q ss_pred ccCccccC-c--------cccEEEccCCcceeecChhhh--cCCCCCeEeccCccCcccCChhhhccCCCCEEEccC---
Q 048302 391 SIPEYISE-L--------PLKVLDLQYNNFTGVIPVSLW--NSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSS--- 456 (545)
Q Consensus 391 ~~~~~~~~-~--------~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~--- 456 (545)
.+|..+.. . .|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence 45543322 2 4888888888888 6677776 88888888888888886 677788888888888866
Q ss_pred ---CcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcc
Q 048302 457 ---NMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 457 ---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 531 (545)
|++.+.+|..+..+++|++|+|++|.+ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|++
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 677778888888888888888888888 56777654 5888888888888765555554444444555555543
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-52 Score=445.35 Aligned_cols=469 Identities=25% Similarity=0.235 Sum_probs=288.9
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
+++.++++++.+.+..+..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..|+++++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 78999999999988777789999999999999999988888899999999999999999986555679999999999999
Q ss_pred cccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhh--CCCCCCEEEccCCcCc
Q 048302 145 SNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFT--NLQSLSYLDVSNNLLS 222 (545)
Q Consensus 145 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~~~ 222 (545)
+|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++ ++...+. .+++|++|++++|.++
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCCCccc
Confidence 999987777889999999999999999998888889999999999999999884 4434433 4577888888888777
Q ss_pred ccCCcccccc---------------------------CCCCceecccccccccCCcCCCCCCC--CCEEEccCCcCcccC
Q 048302 223 GNIPPEIGNL---------------------------KKLSDLYLGINQFTGSIPAELGNCRN--LKAVVLSLNALSGSL 273 (545)
Q Consensus 223 ~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~ 273 (545)
+..+..+..+ ++|+.|++++|.+.+..+..+..++. |++|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 6555544432 33444455555555444444444432 555555555555544
Q ss_pred hhhhcccc-ccEEEccCCCCCCCCccc---------------------------------cCCCCCCCEEEccCCcceec
Q 048302 274 PEQLAELQ-IFTFSAGMNQLSGPLPSW---------------------------------LGKWNQMDSLWLYNNQFVGR 319 (545)
Q Consensus 274 ~~~l~~l~-l~~l~l~~~~~~~~~~~~---------------------------------~~~~~~L~~L~l~~n~~~~~ 319 (545)
|..+..+. ++.+++++|.+.+..+.+ +..+++|++|++++|.+.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 44454444 555555555544444433 44455566666666666555
Q ss_pred CCcCCCCCCCCCEEEcccCcCccC--CCccccC--CCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccC-c
Q 048302 320 IPPEIGNCSMLKCISLSNNKLSGP--IPRELCD--SGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIP-E 394 (545)
Q Consensus 320 ~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 394 (545)
.+..+..+++|++|++++|.+... ....+.. .++|+.|++++|++.+..+..|..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 555555555555555555432211 0011111 1234444444455555555555666666666666666655444 3
Q ss_pred cccCcc-ccEEEccCCcceeecChhh--------------------------hcCCCCCeEeccCccCcccCChhhhccC
Q 048302 395 YISELP-LKVLDLQYNNFTGVIPVSL--------------------------WNSENLMEFNAASNLLEGSLSWEIGNAV 447 (545)
Q Consensus 395 ~~~~~~-L~~L~l~~n~l~~~~~~~~--------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 447 (545)
.+..++ |++|++++|++.+..+..+ ..+++|+.|++++|.+.+..+..+..++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 444444 6666666665554444444 4444444444444444444444444445
Q ss_pred CCCEEEccCCcCccccc--------ccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCC
Q 048302 448 ALEELDLSSNMLTGQIP--------KKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT 519 (545)
Q Consensus 448 ~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 519 (545)
+|++|++++|++++..+ ..+.++++|++|+|++|.++...+..|.++++|++|++++|++++..+..+..++
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 55555555554443211 1134445555555555555433333455555555555555555533333445555
Q ss_pred CCCeeeCCCCccccc
Q 048302 520 QLQFLDLSHNNLSGP 534 (545)
Q Consensus 520 ~L~~L~l~~n~l~~~ 534 (545)
+|++|++++|++++.
T Consensus 585 ~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 585 SLKSLNLQKNLITSV 599 (680)
T ss_dssp TCCEEECTTSCCCBC
T ss_pred CCCEEECCCCcCCcc
Confidence 555555555555543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-52 Score=444.23 Aligned_cols=460 Identities=22% Similarity=0.174 Sum_probs=389.9
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
+++.++++++.+.+..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 78999999999998878889999999999999999988888899999999999999999998889999999999999999
Q ss_pred cccCCccCCccccCCCCCCEEEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCC----CEEEccCC
Q 048302 145 SNSFTGEMPSELGDIKQLKSLDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSL----SYLDVSNN 219 (545)
Q Consensus 145 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L----~~L~l~~n 219 (545)
+|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+ ..++.+++| ++|++++|
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEECTTC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccceeeccCC
Confidence 999987777889999999999999999986 568899999999999999999985434 555555444 47888888
Q ss_pred cCcccCCccccccCCCCceeccccccc-----------------------------------------------------
Q 048302 220 LLSGNIPPEIGNLKKLSDLYLGINQFT----------------------------------------------------- 246 (545)
Q Consensus 220 ~~~~~~~~~l~~l~~L~~L~l~~n~l~----------------------------------------------------- 246 (545)
.+++..+..+.. .+|+.|++++|.+.
T Consensus 192 ~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 888554444443 37888888777553
Q ss_pred -----ccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecC
Q 048302 247 -----GSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRI 320 (545)
Q Consensus 247 -----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 320 (545)
+..+. +..+++|+.|+++++.+.. +| .+..+. ++.+++++|.+ +.+|. + .+++|++|++++|...+..
T Consensus 271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 271 TNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC
T ss_pred cccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch
Confidence 22222 5567788888888888753 44 566554 88889998888 66774 3 8899999999998655444
Q ss_pred CcCCCCCCCCCEEEcccCcCccC--CCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccC-cccc
Q 048302 321 PPEIGNCSMLKCISLSNNKLSGP--IPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIP-EYIS 397 (545)
Q Consensus 321 ~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 397 (545)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|++.+..+ ..+.
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhh
Confidence 567889999999999998866 4788889999999999999988654 778899999999999999998777 5676
Q ss_pred Ccc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcc-cCChhhhccCCCCEEEccCCcCcccccccccccCCCCE
Q 048302 398 ELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEG-SLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQI 475 (545)
Q Consensus 398 ~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 475 (545)
.++ |++|++++|++.+..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 666 9999999999999899999999999999999999987 47888899999999999999999888889999999999
Q ss_pred EeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCC-CCCeeeCCCCcccccCC
Q 048302 476 LKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT-QLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 476 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ip 536 (545)
|++++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+++++++|++.+..+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999988999999999999999999999 6777788887 69999999999998666
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-51 Score=439.50 Aligned_cols=472 Identities=20% Similarity=0.206 Sum_probs=356.8
Q ss_pred CcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 048302 64 SRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSL 143 (545)
Q Consensus 64 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (545)
.+++.++++++.+.+..+..+.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 37888899988888877888888899999999999887666567888999999999999988777788889999999999
Q ss_pred ccccCCccCCccccCCCCCCEEEeecCCCCccCCcccC--CCCCCCEEEccCCcCccccChhhhhCC-------------
Q 048302 144 RSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLG--DLTQLQDLGLSDNLLSGSLPVSLFTNL------------- 208 (545)
Q Consensus 144 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l------------- 208 (545)
++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+ ..+..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCC
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhcccccc
Confidence 99988888888888899999999999888766555443 45778888888887764333 323221
Q ss_pred --------------CCCCEEEccCCcCcccCCccccccCC--CCceecccccccccCCcCCCCCCCCCEEEccCCcCccc
Q 048302 209 --------------QSLSYLDVSNNLLSGNIPPEIGNLKK--LSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGS 272 (545)
Q Consensus 209 --------------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 272 (545)
++|+.|++++|.+.+..+..+..++. |++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 34455555555555444444444432 55555555555544444455555555555555544443
Q ss_pred Chh---------------------------------hhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCc---
Q 048302 273 LPE---------------------------------QLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQ--- 315 (545)
Q Consensus 273 ~~~---------------------------------~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--- 315 (545)
.|. .+..+. ++.+++++|.+.+..+..+..+++|++|++++|.
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 332 333444 7888899999998888888888888877776654
Q ss_pred -------------------------ceecCCcCCCCCCCCCEEEcccCcCccCCC-ccccCCCCCcEEECcCCcCccccc
Q 048302 316 -------------------------FVGRIPPEIGNCSMLKCISLSNNKLSGPIP-RELCDSGSLVEINLDGNMLSGTIE 369 (545)
Q Consensus 316 -------------------------~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~ 369 (545)
+.+..|..+..+++|+.|++++|.+++.++ ..+..+++|++|++++|++.+..+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 344445556667777777777777765444 566667777777777777776666
Q ss_pred ccccCCCCCCEEEcccCeee--eccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCC------
Q 048302 370 DVFDRCTNLSELVLVNNRIS--GSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLS------ 440 (545)
Q Consensus 370 ~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------ 440 (545)
..|..+++|+.|++++|.+. +..|..+..++ |+.|++++|++++..+..+.++++|+.|++++|.+.+..+
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 67777777777777777765 45677777777 9999999999998888889999999999999999976422
Q ss_pred --hhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccccccc-C
Q 048302 441 --WEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIA-D 517 (545)
Q Consensus 441 --~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~ 517 (545)
..+..+++|++|++++|+++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+. .
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence 2378899999999999999955455799999999999999999987777889999999999999999987777776 7
Q ss_pred CCCCCeeeCCCCcccccCC
Q 048302 518 LTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 518 l~~L~~L~l~~n~l~~~ip 536 (545)
+++|+++++++|++.+..+
T Consensus 608 ~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 608 FRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HTTCSEEECTTCCCCBCCC
T ss_pred ccccCEEEccCCCcccCCc
Confidence 8999999999999998876
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.6e-51 Score=432.30 Aligned_cols=459 Identities=22% Similarity=0.191 Sum_probs=383.7
Q ss_pred EEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccC
Q 048302 69 LVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSF 148 (545)
Q Consensus 69 l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 148 (545)
++.++..++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 444555554 3454443 7899999999999988888999999999999999999988899999999999999999999
Q ss_pred CccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCcc-ccChhhhhCCCCCCEEEccCCcCcccCCc
Q 048302 149 TGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSG-SLPVSLFTNLQSLSYLDVSNNLLSGNIPP 227 (545)
Q Consensus 149 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 227 (545)
.+..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+| ..++++++|++|++++|.+++..+.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecChh
Confidence 98889999999999999999999997777889999999999999999985 567 7789999999999999999988888
Q ss_pred cccccCCCC----ceecccccccccCCcCCCCCCCCCEEEccCCcCcc-cChhhh-------------------------
Q 048302 228 EIGNLKKLS----DLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSG-SLPEQL------------------------- 277 (545)
Q Consensus 228 ~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l------------------------- 277 (545)
.++.+++|+ .|++++|.+++..+..+... +|++|++++|.+.+ ..|..+
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 888877665 79999999997666665554 89999999987652 122211
Q ss_pred -------------------------------cccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCC
Q 048302 278 -------------------------------AELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIG 325 (545)
Q Consensus 278 -------------------------------~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 325 (545)
..+. +..++++++.+.. ++ ++..+++|++|++++|.+ +.+| .+
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~- 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL- 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-
Confidence 2222 4555555555543 33 566677777777777777 4666 34
Q ss_pred CCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccc--cccccCCCCCCEEEcccCeeeeccCccccCcc-cc
Q 048302 326 NCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTI--EDVFDRCTNLSELVLVNNRISGSIPEYISELP-LK 402 (545)
Q Consensus 326 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~ 402 (545)
.+++|++|++++|...+.. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+ +|..+..++ |+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 7777788888777544333 4567889999999999887663 6778889999999999999885 456666666 99
Q ss_pred EEEccCCcceeecC-hhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcc-cccccccccCCCCEEeCCC
Q 048302 403 VLDLQYNNFTGVIP-VSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG-QIPKKIGNLTNIQILKLNS 480 (545)
Q Consensus 403 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~ 480 (545)
.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 99999999998877 678999999999999999999999999999999999999999997 4788899999999999999
Q ss_pred ccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCCccc
Q 048302 481 NFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSKPSS 541 (545)
Q Consensus 481 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~~~~ 541 (545)
|.+++..|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++ .+|..+..
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 9999999999999999999999999999888999999999999999999999 78876543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-50 Score=421.34 Aligned_cols=464 Identities=21% Similarity=0.217 Sum_probs=345.2
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
+++.++++++.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 56667777777766656666777777777777777666666667777777777777777766666667777777777777
Q ss_pred cccCCccCCccccCCCCCCEEEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCC----CEEEccCC
Q 048302 145 SNSFTGEMPSELGDIKQLKSLDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSL----SYLDVSNN 219 (545)
Q Consensus 145 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L----~~L~l~~n 219 (545)
+|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.++ .++...++.+++| +.+++++|
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCC
Confidence 777664444456677777777777776665 35666777777777777777766 3333455555555 66777777
Q ss_pred cCcccCCccccccCCCCceecccccccc-------------------------------cCCcCCCCCC--CCCEEEccC
Q 048302 220 LLSGNIPPEIGNLKKLSDLYLGINQFTG-------------------------------SIPAELGNCR--NLKAVVLSL 266 (545)
Q Consensus 220 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------------------------------~~~~~l~~l~--~L~~L~l~~ 266 (545)
.+.+..+..+... +|+.|++++|.... .....+..++ .++.+++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7666555555444 56666666652110 0001111111 123344444
Q ss_pred C-cCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCC
Q 048302 267 N-ALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPI 344 (545)
Q Consensus 267 n-~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 344 (545)
+ .+.+..+..+..+. ++.++++.+.+. .+|.++..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 4 44455566666555 777777777766 466667777 7888888888776 4554 46778888888888877655
Q ss_pred CccccCCCCCcEEECcCCcCcccc--cccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecC-hhhh
Q 048302 345 PRELCDSGSLVEINLDGNMLSGTI--EDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIP-VSLW 420 (545)
Q Consensus 345 ~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~-~~~~ 420 (545)
+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..++ |+.|++++|.+.+..+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 54 67899999999999988664 66788999999999999999866555 66666 9999999999997766 5688
Q ss_pred cCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCc-ccccccccccCCCCEEeCCCccccccCCcccccCCCCCE
Q 048302 421 NSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLT-GQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNT 499 (545)
Q Consensus 421 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 499 (545)
.+++|+.|++++|.+.+..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..|..+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 9999999999999999999999999999999999999998 578899999999999999999999998999999999999
Q ss_pred EeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCC
Q 048302 500 LDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSK 538 (545)
Q Consensus 500 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~ 538 (545)
|++++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999888888999999999999999999998853
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-50 Score=443.12 Aligned_cols=482 Identities=20% Similarity=0.247 Sum_probs=322.1
Q ss_pred ccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccC-CcccCCCCCCCEEeCCCCcCcccCCccc
Q 048302 54 CDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQL-SPQVSNLKRLKMLSLGENQLSGSVPSQL 132 (545)
Q Consensus 54 c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (545)
|.|..|.+...+++.++++++.+.+..+..+.++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|
T Consensus 14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 455566553347888888888888877888888888888888888655554 6778888888888888888887778888
Q ss_pred CCCCCCCEEEcccccCCccCCcc--ccCCCCCCEEEeecCCCCccCC-cccCCCCCCCEEEccCCcCccccChhhhhCC-
Q 048302 133 GLLTRLETLSLRSNSFTGEMPSE--LGDIKQLKSLDFSGNGLNGTFP-SRLGDLTQLQDLGLSDNLLSGSLPVSLFTNL- 208 (545)
Q Consensus 133 ~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l- 208 (545)
+++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+ ..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHccccc
Confidence 88888888888888888655554 8888888888888888876544 568888888888888888875555 555555
Q ss_pred -CCCCEEEccCCcCcccCCccccccCC------CCceecccccccccCCcCCCCC---CCCCEEEccCC---------cC
Q 048302 209 -QSLSYLDVSNNLLSGNIPPEIGNLKK------LSDLYLGINQFTGSIPAELGNC---RNLKAVVLSLN---------AL 269 (545)
Q Consensus 209 -~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n---------~~ 269 (545)
++|+.|++++|.+.+..+..++.+++ |+.|++++|.+.+..+..+... ..++.+.++.+ .+
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 78888888888888777776666655 8888888887765555433321 22333333211 11
Q ss_pred cccChhhhccc---cccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCc
Q 048302 270 SGSLPEQLAEL---QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPR 346 (545)
Q Consensus 270 ~~~~~~~l~~l---~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 346 (545)
.+.....+..+ .+..++++.|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 11111122221 244455555555444444445555555555555555444444455555555555555555444444
Q ss_pred cccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeee------------------ccCccccCccccEEEccC
Q 048302 347 ELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISG------------------SIPEYISELPLKVLDLQY 408 (545)
Q Consensus 347 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~------------------~~~~~~~~~~L~~L~l~~ 408 (545)
.+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++ .+|.. ...++.+++++
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~ 410 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI--NLTANLIHLSE 410 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC--CTTCCEEECCS
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc--ccccceeeccc
Confidence 45555555555555555544444444455555555555554432 22221 11266677777
Q ss_pred CcceeecC-hhhhcCCCCCeEeccCccCcccCCh-hhhccCCCCEEEccCCcCc-----ccccccccccCCCCEEeCCCc
Q 048302 409 NNFTGVIP-VSLWNSENLMEFNAASNLLEGSLSW-EIGNAVALEELDLSSNMLT-----GQIPKKIGNLTNIQILKLNSN 481 (545)
Q Consensus 409 n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n 481 (545)
|++.+... ..+..+++|+.|++++|++.+..+. .+..+++|++|++++|.++ +..+..|.++++|++|+|++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 77664322 2345788889999998888765432 3455788888888888886 334456788889999999999
Q ss_pred cccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCCcc
Q 048302 482 FFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSKPS 540 (545)
Q Consensus 482 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~~~ 540 (545)
.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|+.+.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 99888888888899999999999998866555555 7899999999999888887654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=411.74 Aligned_cols=440 Identities=20% Similarity=0.180 Sum_probs=379.2
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
+++.++++++.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..++.+++|++|+++
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 79999999999998777889999999999999999988888899999999999999999986666679999999999999
Q ss_pred cccCCc-cCCccccCCCCCCEEEeecCCCCccCCcccCCCCCC----CEEEccCCcCccccChhhhhCCCCCCEEEccCC
Q 048302 145 SNSFTG-EMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQL----QDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNN 219 (545)
Q Consensus 145 ~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 219 (545)
+|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++| ++|++++|.+++ ++...+... +|+.|++++|
T Consensus 133 ~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESC
T ss_pred CCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHHHhccC-cceeEecccc
Confidence 999986 479999999999999999999998888888888888 899999999985 443666555 7999999987
Q ss_pred cCcc-cCCc------------------------------cccccC--CCCceecccc-cccccCCcCCCCCCCCCEEEcc
Q 048302 220 LLSG-NIPP------------------------------EIGNLK--KLSDLYLGIN-QFTGSIPAELGNCRNLKAVVLS 265 (545)
Q Consensus 220 ~~~~-~~~~------------------------------~l~~l~--~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 265 (545)
.... .++. .+..++ .++.+++.++ .+.+..+..+..+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 4321 1111 112222 2345556666 6677788889999999999999
Q ss_pred CCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCC-
Q 048302 266 LNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPI- 344 (545)
Q Consensus 266 ~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~- 344 (545)
+|.+. .+|..+..+.++.+++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++..
T Consensus 291 ~~~l~-~l~~~~~~~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 291 SVTIE-RVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp SCEEC-SCCBCCSCCCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE
T ss_pred Cccch-hhhhhhccCCccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc
Confidence 99987 5777777668999999999888 4554 4789999999999998766554 78899999999999998654
Q ss_pred -CccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccC-ccccCcc-ccEEEccCCcceeecChhhhc
Q 048302 345 -PRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIP-EYISELP-LKVLDLQYNNFTGVIPVSLWN 421 (545)
Q Consensus 345 -~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~-L~~L~l~~n~l~~~~~~~~~~ 421 (545)
+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..++ |++|++++|.+.+..+..+..
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 67788999999999999999877666 8999999999999999997766 4566666 999999999999999999999
Q ss_pred CCCCCeEeccCccCc-ccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEE
Q 048302 422 SENLMEFNAASNLLE-GSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTL 500 (545)
Q Consensus 422 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 500 (545)
+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999997 5788899999999999999999998889999999999999999999999888889999999999
Q ss_pred eCCCCcccccccc
Q 048302 501 DLGNNNLNGSIPE 513 (545)
Q Consensus 501 ~L~~n~l~~~~~~ 513 (545)
++++|++.+..|.
T Consensus 524 ~l~~N~~~~~~~~ 536 (570)
T 2z63_A 524 WLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EecCCcccCCCcc
Confidence 9999999987663
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=425.71 Aligned_cols=461 Identities=21% Similarity=0.205 Sum_probs=384.2
Q ss_pred EeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEcccccC
Q 048302 70 VIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSV-PSQLGLLTRLETLSLRSNSF 148 (545)
Q Consensus 70 ~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~ 148 (545)
+.++++++. +|. -.+++++|+|++|.+.+..+..|.++++|++|++++|...+.+ |..|+++++|++|+|++|.+
T Consensus 10 dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 10 FYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 344555553 444 3578999999999999888999999999999999999655455 88999999999999999999
Q ss_pred CccCCccccCCCCCCEEEeecCCCCccCCcc--cCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCC
Q 048302 149 TGEMPSELGDIKQLKSLDFSGNGLNGTFPSR--LGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIP 226 (545)
Q Consensus 149 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 226 (545)
.+..|..|.++++|++|++++|.+.+..|.. ++++++|++|++++|.+++..+...++++++|++|++++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9888999999999999999999999766665 99999999999999999865554678999999999999999998888
Q ss_pred cccccc--CCCCceecccccccccCCcCCCCCCC------CCEEEccCCcCcccChhhhccc----cccEEEccCC----
Q 048302 227 PEIGNL--KKLSDLYLGINQFTGSIPAELGNCRN------LKAVVLSLNALSGSLPEQLAEL----QIFTFSAGMN---- 290 (545)
Q Consensus 227 ~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~l----~l~~l~l~~~---- 290 (545)
..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+... .+..+.+..+
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 999887 89999999999999888877777665 9999999999988877766543 3667766532
Q ss_pred -----CCCCCCccccCCC--CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCc
Q 048302 291 -----QLSGPLPSWLGKW--NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNM 363 (545)
Q Consensus 291 -----~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 363 (545)
.+.+.....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 2333333334443 789999999999998888899999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccC-------
Q 048302 364 LSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLL------- 435 (545)
Q Consensus 364 i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~------- 435 (545)
+.+..+..|..+++|+.|++++|.+.+..+..+..++ |+.|++++|.+++.. .+++|+.+++++|++
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~ 400 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKIN 400 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccc
Confidence 9998899999999999999999999887777787777 999999999987431 245555555555544
Q ss_pred -------------cccC-ChhhhccCCCCEEEccCCcCcccccc-cccccCCCCEEeCCCcccc-----ccCCcccccCC
Q 048302 436 -------------EGSL-SWEIGNAVALEELDLSSNMLTGQIPK-KIGNLTNIQILKLNSNFFD-----GIIPMEFGDCI 495 (545)
Q Consensus 436 -------------~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~ 495 (545)
.+.. +..+..+++|++|++++|++++..+. .+..+++|++|++++|.+. +..+..|.+++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcc
Confidence 4321 12345788999999999998854332 4566899999999999987 33446688899
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCCc
Q 048302 496 SLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSKP 539 (545)
Q Consensus 496 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~~ 539 (545)
+|++|+|++|++++..|..+..+++|++|++++|++++-.|..+
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 99999999999998888889999999999999999997555544
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-49 Score=412.63 Aligned_cols=470 Identities=20% Similarity=0.180 Sum_probs=360.0
Q ss_pred CccccceeecCC-------------cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeC
Q 048302 53 HCDWFGVKCRHS-------------RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSL 119 (545)
Q Consensus 53 ~c~w~~~~c~~~-------------~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L 119 (545)
.|.|.|+ |+.. +++.++++++.+.+..+..+.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888877 6532 6788888888887777777888888888888888887777777888888888888
Q ss_pred CCCcCcccCCcccCCCCCCCEEEcccccCCc-cCCccccCCCCCCEEEeecCCCCccCC-cccCCCCCCCEEEccCCcCc
Q 048302 120 GENQLSGSVPSQLGLLTRLETLSLRSNSFTG-EMPSELGDIKQLKSLDFSGNGLNGTFP-SRLGDLTQLQDLGLSDNLLS 197 (545)
Q Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~ 197 (545)
++|.+.+..|..++.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 8888876666668888888888888888775 356677888888888888887433443 56788888888888888887
Q ss_pred cccChhhhhCCCCCCEEEccCCcCcccCCcc-ccccCCCCceecccccccccC--C-cCCCCCCCCCEEEccCCcCcccC
Q 048302 198 GSLPVSLFTNLQSLSYLDVSNNLLSGNIPPE-IGNLKKLSDLYLGINQFTGSI--P-AELGNCRNLKAVVLSLNALSGSL 273 (545)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~~~~~~ 273 (545)
+..| ..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..
T Consensus 162 ~~~~-~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 162 NYQS-QSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp EECT-TTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccCh-hhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 6566 667778888888888887653 3333 346788888888888887542 1 22345778888888888877665
Q ss_pred hhhhcc----cc-ccEEEccCCCCCCC------CccccCCCCCCCEEEccCCcceecC-----CcCCCCCCCCCEEEccc
Q 048302 274 PEQLAE----LQ-IFTFSAGMNQLSGP------LPSWLGKWNQMDSLWLYNNQFVGRI-----PPEIGNCSMLKCISLSN 337 (545)
Q Consensus 274 ~~~l~~----l~-l~~l~l~~~~~~~~------~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~ls~ 337 (545)
+..+.. +. +..++++++.+.+. ....+..+++++.+++.++.+.... +..+...++|+.|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 554432 22 67777777765542 1223466788888888888765321 11112346899999999
Q ss_pred CcCccCCCccc-cCCCCCcEEECcCCcCccccc---ccccCCCCCCEEEcccCeeeeccC--ccccCcc-ccEEEccCCc
Q 048302 338 NKLSGPIPREL-CDSGSLVEINLDGNMLSGTIE---DVFDRCTNLSELVLVNNRISGSIP--EYISELP-LKVLDLQYNN 410 (545)
Q Consensus 338 n~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~-L~~L~l~~n~ 410 (545)
|.+. .+|..+ ..+++|++|++++|++.+..+ ..+..+++|++|++++|++++..+ ..+..++ |++|++++|+
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 9987 566655 579999999999999988653 347889999999999999986532 3455666 9999999999
Q ss_pred ceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcc
Q 048302 411 FTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPME 490 (545)
Q Consensus 411 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 490 (545)
++ .+|..+..+++|+.|++++|.+.+ +|..+ .++|++|++++|++++.. ..+++|++|+|++|+++ .+|.
T Consensus 399 l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 399 FH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468 (549)
T ss_dssp CC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred Cc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence 98 678888899999999999999874 33332 368999999999998642 57899999999999998 5565
Q ss_pred cccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCC
Q 048302 491 FGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 491 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip 536 (545)
...+++|++|++++|++++..|..+..+++|++|++++|++.+.+|
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4679999999999999998888889999999999999999998877
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-48 Score=400.20 Aligned_cols=451 Identities=19% Similarity=0.203 Sum_probs=372.8
Q ss_pred EEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccc
Q 048302 67 VSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSN 146 (545)
Q Consensus 67 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 146 (545)
+.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++.+..|..|+.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46788888888 4666565 89999999999998887789999999999999999999888999999999999999999
Q ss_pred cCCccCCccccCCCCCCEEEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCC--CEEEccCCcC--
Q 048302 147 SFTGEMPSELGDIKQLKSLDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSL--SYLDVSNNLL-- 221 (545)
Q Consensus 147 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~~-- 221 (545)
.+. .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc
Confidence 998 56665 89999999999999987 478899999999999999999874 346677788 9999999998
Q ss_pred cccCCccccccC-CCCceecccccccccCC-cCCCCCCCCCEEEccCCc-------CcccChhhhcccc-ccEEEccCCC
Q 048302 222 SGNIPPEIGNLK-KLSDLYLGINQFTGSIP-AELGNCRNLKAVVLSLNA-------LSGSLPEQLAELQ-IFTFSAGMNQ 291 (545)
Q Consensus 222 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~-l~~l~l~~~~ 291 (545)
.+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|. +.+.++ .+..+. ++.++++.+.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 777777777665 33456777887766544 456778899999999886 555555 455555 7778777776
Q ss_pred CCCCCccccC---CCCCCCEEEccCCcceecCCcCC-----CCCCCCCEEEcccCcCccCCC-ccccCC---CCCcEEEC
Q 048302 292 LSGPLPSWLG---KWNQMDSLWLYNNQFVGRIPPEI-----GNCSMLKCISLSNNKLSGPIP-RELCDS---GSLVEINL 359 (545)
Q Consensus 292 ~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~ls~n~l~~~~~-~~~~~~---~~L~~L~L 359 (545)
+.+..+..+. ..++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 6543221111 24589999999999998889888 8899999999999998 444 444443 67999999
Q ss_pred cCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCccee--ecChhhhcCCCCCeEeccCccCc
Q 048302 360 DGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTG--VIPVSLWNSENLMEFNAASNLLE 436 (545)
Q Consensus 360 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~ 436 (545)
++|.+..... +..+++|++|++++|++++..|..+..++ |++|++++|++++ .+|..+..+++|+.|++++|.+.
T Consensus 310 ~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 9999865431 26789999999999999988888888877 9999999999997 56677999999999999999999
Q ss_pred ccCChh-hhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccccc-
Q 048302 437 GSLSWE-IGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEK- 514 (545)
Q Consensus 437 ~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~- 514 (545)
+.+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 463 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence 866654 78889999999999999888776664 79999999999998 77888889999999999999999 56665
Q ss_pred ccCCCCCCeeeCCCCcccccCC
Q 048302 515 IADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 515 l~~l~~L~~L~l~~n~l~~~ip 536 (545)
+..+++|++|++++|++.+.++
T Consensus 464 ~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred hccCCcccEEECcCCCCcccCC
Confidence 8899999999999999998654
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.6e-47 Score=395.61 Aligned_cols=467 Identities=16% Similarity=0.154 Sum_probs=383.3
Q ss_pred eeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCC
Q 048302 59 VKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRL 138 (545)
Q Consensus 59 ~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (545)
..|.+..+ .+.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++.+..|..|+.+++|
T Consensus 2 ~~C~~~~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 2 LSCDASGV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp CEECTTSE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence 35777666 677777776 4565553 799999999999998888999999999999999999998888999999999
Q ss_pred CEEEcccccCCccCCccccCCCCCCEEEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEcc
Q 048302 139 ETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVS 217 (545)
Q Consensus 139 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 217 (545)
++|++++|.+.+..|..|+++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 999999999997777779999999999999999986 3567899999999999999996567876788999999999999
Q ss_pred CCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccC--hhhhc-cc-cccEEEccCCCCC
Q 048302 218 NNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSL--PEQLA-EL-QIFTFSAGMNQLS 293 (545)
Q Consensus 218 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~l~-~l-~l~~l~l~~~~~~ 293 (545)
+|.+++..|..++.+++|++|++++|.+.......+..+++|++|++++|.+.+.. +..+. .. .+..++++.+.+.
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 99999999999999999999999999876333233456899999999999998743 22222 22 2788888888776
Q ss_pred CCCc----cccCCCCCCCEEEccCCcceecC------CcCCCCCCCCCEEEcccCcCccC-----CCccccCCCCCcEEE
Q 048302 294 GPLP----SWLGKWNQMDSLWLYNNQFVGRI------PPEIGNCSMLKCISLSNNKLSGP-----IPRELCDSGSLVEIN 358 (545)
Q Consensus 294 ~~~~----~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~ls~n~l~~~-----~~~~~~~~~~L~~L~ 358 (545)
+..+ ..+..++.|+.+++++|.+.+.. ...+..+++++.|++.++.+... .+..+...++|++|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 6433 34467789999999999887531 12346778999999999876532 122233457899999
Q ss_pred CcCCcCcccccccccCCCCCCEEEcccCeeeeccCc---cccCcc-ccEEEccCCcceeecC--hhhhcCCCCCeEeccC
Q 048302 359 LDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPE---YISELP-LKVLDLQYNNFTGVIP--VSLWNSENLMEFNAAS 432 (545)
Q Consensus 359 L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~-L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~ 432 (545)
+++|.+.......+..+++|++|++++|++.+..|. .+..++ |+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 317 l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp EESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred eccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 999999865555556899999999999999987643 355556 9999999999986543 4588999999999999
Q ss_pred ccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccc
Q 048302 433 NLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIP 512 (545)
Q Consensus 433 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 512 (545)
|++. .+|..+..+++|++|++++|+++ .++..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|
T Consensus 397 N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp CCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCC
T ss_pred CCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCC
Confidence 9998 67888888999999999999998 444443 368999999999998653 57899999999999999 677
Q ss_pred ccccCCCCCCeeeCCCCcccccCCCCcc
Q 048302 513 EKIADLTQLQFLDLSHNNLSGPIPSKPS 540 (545)
Q Consensus 513 ~~l~~l~~L~~L~l~~n~l~~~ip~~~~ 540 (545)
. ...+++|++|++++|++++.+|+.+.
T Consensus 468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 468 D-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp C-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred C-cccCccCCEEecCCCccCCcCHHHHh
Confidence 6 46799999999999999987776544
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-46 Score=401.71 Aligned_cols=413 Identities=22% Similarity=0.273 Sum_probs=330.5
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeC-CCCcCcccCCccc----------------------------------
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSL-GENQLSGSVPSQL---------------------------------- 132 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~---------------------------------- 132 (545)
.+++.|+|+++.+.|.+|+.++++++|++|+| ++|.+.|..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8887765533110
Q ss_pred -----------------CCCCCCCEEEccc--ccCCccCCccccCCCCCCEEEeecCCCCc-----------------cC
Q 048302 133 -----------------GLLTRLETLSLRS--NSFTGEMPSELGDIKQLKSLDFSGNGLNG-----------------TF 176 (545)
Q Consensus 133 -----------------~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-----------------~~ 176 (545)
.....++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1112233333332 66665 77788888888888888888886 37
Q ss_pred CcccC--CCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCc-Ccc-cCCccccccC-------CCCceecccccc
Q 048302 177 PSRLG--DLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNL-LSG-NIPPEIGNLK-------KLSDLYLGINQF 245 (545)
Q Consensus 177 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l 245 (545)
|+.++ ++++|++|++++|.+.+.+| ..+.++++|++|++++|. +++ .+|..++.++ +|++|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 77776 78888888888887777777 667778888888888887 776 6676666554 777777777777
Q ss_pred cccCCc--CCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcC
Q 048302 246 TGSIPA--ELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPE 323 (545)
Q Consensus 246 ~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 323 (545)
+ .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~------------------------~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~ 613 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR------------------------HLE-AFGTNVKLTDLKLDYNQIE-EIPED 613 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC------------------------BCC-CCCTTSEESEEECCSSCCS-CCCTT
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc------------------------cch-hhcCCCcceEEECcCCccc-cchHH
Confidence 7 6666 6777777777777777665 344 5778899999999999999 88988
Q ss_pred CCCCCC-CCEEEcccCcCccCCCccccCCCC--CcEEECcCCcCcccccccc---c--CCCCCCEEEcccCeeeeccCcc
Q 048302 324 IGNCSM-LKCISLSNNKLSGPIPRELCDSGS--LVEINLDGNMLSGTIEDVF---D--RCTNLSELVLVNNRISGSIPEY 395 (545)
Q Consensus 324 ~~~~~~-L~~L~ls~n~l~~~~~~~~~~~~~--L~~L~L~~n~i~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~ 395 (545)
+..+++ |+.|++++|.++ .+|..+...+. |+.|++++|++.+.++... . .+++|+.|++++|.++ .+|..
T Consensus 614 l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~ 691 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTE 691 (876)
T ss_dssp SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHH
T ss_pred HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHH
Confidence 999999 999999999999 77887776654 9999999999988665322 2 3458999999999999 55655
Q ss_pred c-cCcc-ccEEEccCCcceeecChhhhc--------CCCCCeEeccCccCcccCChhhh--ccCCCCEEEccCCcCcccc
Q 048302 396 I-SELP-LKVLDLQYNNFTGVIPVSLWN--------SENLMEFNAASNLLEGSLSWEIG--NAVALEELDLSSNMLTGQI 463 (545)
Q Consensus 396 ~-~~~~-L~~L~l~~n~l~~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~ 463 (545)
+ ..++ |+.|++++|++. .+|..+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|++++ +
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 4 3555 999999999999 55554333 239999999999999 7888886 89999999999999996 7
Q ss_pred cccccccCCCCEEeCCC------ccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCC
Q 048302 464 PKKIGNLTNIQILKLNS------NFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPS 537 (545)
Q Consensus 464 ~~~~~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~ 537 (545)
|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++..--+.
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 88999999999999976 788889999999999999999999999 58888765 6999999999998754433
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-46 Score=399.83 Aligned_cols=431 Identities=22% Similarity=0.295 Sum_probs=363.5
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCc------c------cCCcccCCCCCCCEEEcccccCCccCCcc
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLS------G------SVPSQLGLLTRLETLSLRSNSFTGEMPSE 155 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 155 (545)
.+++.|+|+++.+.|.+|++++++++|++|++++|.+. + .+|... +.+|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 57899999999999999999999999999999999762 2 233322 44566 788888777766665
Q ss_pred ccC-------------------CCCCCEEEee--cCCCCccCCcccCCCCCCCEEEccCCcCccc---------------
Q 048302 156 LGD-------------------IKQLKSLDFS--GNGLNGTFPSRLGDLTQLQDLGLSDNLLSGS--------------- 199 (545)
Q Consensus 156 l~~-------------------l~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--------------- 199 (545)
+.. ...++.+.+. +|.+++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 542 1122222222 567777 899999999999999999999974
Q ss_pred --cChhhhh--CCCCCCEEEccCCcCcccCCccccccCCCCceeccccc-ccc-cCCcCCCCC------CCCCEEEccCC
Q 048302 200 --LPVSLFT--NLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQ-FTG-SIPAELGNC------RNLKAVVLSLN 267 (545)
Q Consensus 200 --~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n 267 (545)
+| ..+. ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|
T Consensus 237 ~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 237 QYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred ccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 78 5667 89999999999999999999999999999999999998 888 788777765 99999999999
Q ss_pred cCcccChh--hhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCC-CCEEEcccCcCccC
Q 048302 268 ALSGSLPE--QLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSM-LKCISLSNNKLSGP 343 (545)
Q Consensus 268 ~~~~~~~~--~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~ 343 (545)
.++ .+|. .+..+. ++.+++++|.+.|.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 998 7887 888887 9999999999998888 8889999999999999998 88888999999 999999999998 7
Q ss_pred CCccccCCC--CCcEEECcCCcCccccccccc-------CCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCccee
Q 048302 344 IPRELCDSG--SLVEINLDGNMLSGTIEDVFD-------RCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTG 413 (545)
Q Consensus 344 ~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~ 413 (545)
+|..+...+ +|++|++++|.+.+..|..+. .+++|++|++++|.++...+..+..++ |+.|++++|+++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence 787776654 899999999999998888887 788999999999999843334444455 999999999999
Q ss_pred ecChh-hhcCC-------CCCeEeccCccCcccCChhhh--ccCCCCEEEccCCcCcccccccccccCCCCEEeC-----
Q 048302 414 VIPVS-LWNSE-------NLMEFNAASNLLEGSLSWEIG--NAVALEELDLSSNMLTGQIPKKIGNLTNIQILKL----- 478 (545)
Q Consensus 414 ~~~~~-~~~~~-------~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L----- 478 (545)
.+|.. +.... +|+.|++++|++. .+|..+. .+++|++|++++|++++ +|..+..+++|++|+|
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence 45543 33332 8999999999999 6787776 89999999999999997 8889999999999999
Q ss_pred -CCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccc
Q 048302 479 -NSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 479 -s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 533 (545)
++|.+.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++..
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 56778889999999999999999999999 57887765 899999999998874
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-45 Score=378.00 Aligned_cols=434 Identities=20% Similarity=0.220 Sum_probs=365.9
Q ss_pred CcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 048302 64 SRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSL 143 (545)
Q Consensus 64 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (545)
.+++.++++++.+.+..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 48999999999999877788999999999999999999888999999999999999999998 56665 8999999999
Q ss_pred ccccCCc-cCCccccCCCCCCEEEeecCCCCccCCcccCCCCCC--CEEEccCCcC--ccccChhhhhCCC-CCCEEEcc
Q 048302 144 RSNSFTG-EMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQL--QDLGLSDNLL--SGSLPVSLFTNLQ-SLSYLDVS 217 (545)
Q Consensus 144 ~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~~~~~l~-~L~~L~l~ 217 (545)
++|.+.+ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..| ..+..+. ....++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc-ccccccccceEEEEec
Confidence 9999997 478999999999999999999986 356777788 9999999999 65666 4455544 23356788
Q ss_pred CCcCcccCC-ccccccCCCCceeccccc-------ccccCCcCCCCCCCCCEEEccCCcCcccChhhhc----cccccEE
Q 048302 218 NNLLSGNIP-PEIGNLKKLSDLYLGINQ-------FTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLA----ELQIFTF 285 (545)
Q Consensus 218 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~----~l~l~~l 285 (545)
+|.+.+.++ ..+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+. ...++.+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 888776554 456789999999999997 666665 688899999999999988865544332 2358999
Q ss_pred EccCCCCCCCCcccc-----CCCCCCCEEEccCCcceecCC-cCCCCC---CCCCEEEcccCcCccCCCccccCCCCCcE
Q 048302 286 SAGMNQLSGPLPSWL-----GKWNQMDSLWLYNNQFVGRIP-PEIGNC---SMLKCISLSNNKLSGPIPRELCDSGSLVE 356 (545)
Q Consensus 286 ~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~---~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 356 (545)
++++|.+.+.+|.++ ..++.|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.... ....+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 999999999999988 8899999999999988 444 333333 67999999999986433 1257899999
Q ss_pred EECcCCcCcccccccccCCCCCCEEEcccCeeee--ccCccccCcc-ccEEEccCCcceeecCh-hhhcCCCCCeEeccC
Q 048302 357 INLDGNMLSGTIEDVFDRCTNLSELVLVNNRISG--SIPEYISELP-LKVLDLQYNNFTGVIPV-SLWNSENLMEFNAAS 432 (545)
Q Consensus 357 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~-L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~ 432 (545)
|++++|.+++..+..+..+++|++|++++|++++ .+|..+..++ |++|++++|++.+.+|. .+..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999999888889999999999999999986 5566677777 99999999999985555 478899999999999
Q ss_pred ccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccc
Q 048302 433 NLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIP 512 (545)
Q Consensus 433 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 512 (545)
|++.+..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999887776554 79999999999999 788888899999999999999995444448999999999999999986543
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-42 Score=369.64 Aligned_cols=438 Identities=21% Similarity=0.185 Sum_probs=281.4
Q ss_pred CCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEee
Q 048302 89 SLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFS 168 (545)
Q Consensus 89 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 168 (545)
++++|+|++|.+.+..+.+|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 45555555555554444555555555555555555554444555555555555555555554444445555555555555
Q ss_pred cCCCCccCCcccCCCCCCCEEEccCCcCccc-cChhhhhCCCCCCEEEccCCcCcccCCccccccCCCC----ceecccc
Q 048302 169 GNGLNGTFPSRLGDLTQLQDLGLSDNLLSGS-LPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLS----DLYLGIN 243 (545)
Q Consensus 169 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n 243 (545)
+|.+++..+..|+++++|++|++++|.+++. +| ..+..+++|++|++++|.+++..+..+..+.+++ .++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 5555544444455555555555555555421 22 3445555555555555555544444444333322 2334444
Q ss_pred cccccCCcCCC---------------------------------------------------------------------
Q 048302 244 QFTGSIPAELG--------------------------------------------------------------------- 254 (545)
Q Consensus 244 ~l~~~~~~~l~--------------------------------------------------------------------- 254 (545)
.+....+..+.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 43322221111
Q ss_pred ------------CCCCCCEEEccCCcCcccChhhhccc-cccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCC
Q 048302 255 ------------NCRNLKAVVLSLNALSGSLPEQLAEL-QIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIP 321 (545)
Q Consensus 255 ------------~l~~L~~L~l~~n~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 321 (545)
...+++.+++.++.+.... .+... .++.+++.++.+.+..+ ..++.++.+++.++.....
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~-- 364 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA-- 364 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--
T ss_pred cccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--
Confidence 1112222222222211110 01111 13344444444333222 1234555555555554322
Q ss_pred cCCCCCCCCCEEEcccCcCcc--CCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCc-cccC
Q 048302 322 PEIGNCSMLKCISLSNNKLSG--PIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPE-YISE 398 (545)
Q Consensus 322 ~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~ 398 (545)
.....+++|+.+++++|.+.. ..+..+....+|+.+++..+.+... +..+..+++|+.+++.++......+. .+..
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccc
Confidence 223457788888888887753 3455666778888888888876654 34577889999999999887765543 4445
Q ss_pred cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCc-ccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEE
Q 048302 399 LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLE-GSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQIL 476 (545)
Q Consensus 399 ~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 476 (545)
.. ++.++++.|.+.+..+..+..++.++.|++++|... +..|..+..+++|++|+|++|++++..|..|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 55 999999999999999999999999999999999754 4567788999999999999999998889999999999999
Q ss_pred eCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCC-CCCCeeeCCCCcccccC
Q 048302 477 KLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADL-TQLQFLDLSHNNLSGPI 535 (545)
Q Consensus 477 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~i 535 (545)
+|++|++++..+..|..+++|++|++++|++++..|..+..+ ++|++|++++|++.+..
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999888999999999999999999999989999887 68999999999998653
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9e-44 Score=373.37 Aligned_cols=453 Identities=21% Similarity=0.219 Sum_probs=357.2
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcc
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLR 144 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (545)
..+.++++++++++ +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|+.|+.+++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34788899998885 666554 899999999999988888899999999999999999998889999999999999999
Q ss_pred cccCCccCCccccCCCCCCEEEeecCCCCc-cCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCC--CEEEccCCcC
Q 048302 145 SNSFTGEMPSELGDIKQLKSLDFSGNGLNG-TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSL--SYLDVSNNLL 221 (545)
Q Consensus 145 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~~ 221 (545)
+|.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++ .. +..+++| ++|++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 99998 66766 89999999999999986 346889999999999999999984 22 4555666 9999999999
Q ss_pred --cccCCccccccC-CCCceecccccccccCCc-CCCCCCCCCEEEccCCcCcc----cChhhhcccc-ccEEEccCCCC
Q 048302 222 --SGNIPPEIGNLK-KLSDLYLGINQFTGSIPA-ELGNCRNLKAVVLSLNALSG----SLPEQLAELQ-IFTFSAGMNQL 292 (545)
Q Consensus 222 --~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~-l~~l~l~~~~~ 292 (545)
++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.... ..+..+..+. +..+++..+.+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 777888887764 122557788887765543 45678899999999885210 1112233333 55555555544
Q ss_pred CCC----CccccCCCCCCCEEEccCCcceecCCcCC-----CCCCCCCEEEcccCcCccCCC-cccc---CCCCCcEEEC
Q 048302 293 SGP----LPSWLGKWNQMDSLWLYNNQFVGRIPPEI-----GNCSMLKCISLSNNKLSGPIP-RELC---DSGSLVEINL 359 (545)
Q Consensus 293 ~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~ls~n~l~~~~~-~~~~---~~~~L~~L~L 359 (545)
.+. ++... ..++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+| ..+. ...+|++|++
T Consensus 262 ~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 262 TWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp CHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred cHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 431 11112 23489999999999988888876 5555566666666665 333 2222 2367999999
Q ss_pred cCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceee--cChhhhcCCCCCeEeccCccCc
Q 048302 360 DGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGV--IPVSLWNSENLMEFNAASNLLE 436 (545)
Q Consensus 360 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~ 436 (545)
++|.+..... ...+++|++|++++|.+++..|..+..++ |++|++++|++++. +|..+..+++|+.|++++|.+.
T Consensus 339 ~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 9998864431 26789999999999999988888888877 99999999999863 4567889999999999999999
Q ss_pred ccCCh-hhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccccc-
Q 048302 437 GSLSW-EIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEK- 514 (545)
Q Consensus 437 ~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~- 514 (545)
+.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 85654 478889999999999999887776554 79999999999998 67777779999999999999999 56665
Q ss_pred ccCCCCCCeeeCCCCcccccCC
Q 048302 515 IADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 515 l~~l~~L~~L~l~~n~l~~~ip 536 (545)
+..+++|+.|++++|++.+.+|
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHH
T ss_pred HhcCCCCCEEEecCCCcCCCcc
Confidence 8999999999999999998765
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.1e-41 Score=358.05 Aligned_cols=426 Identities=21% Similarity=0.192 Sum_probs=327.6
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEc
Q 048302 112 KRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGL 191 (545)
Q Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 191 (545)
+.+++|+|++|.+++..+.+|+++++|++|+|++|.+.+..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999877889999999999999999999877888999999999999999999777788999999999999
Q ss_pred cCCcCccccChhhhhCCCCCCEEEccCCcCcc-cCCccccccCCCCceecccccccccCCcCCCCCCCC----CEEEccC
Q 048302 192 SDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSG-NIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNL----KAVVLSL 266 (545)
Q Consensus 192 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~ 266 (545)
++|+++ .++...|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++ ..++++.
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999998 6775778999999999999999976 467888999999999999999998877777654443 3677777
Q ss_pred CcCcccChhhhccccccEEEccCCCCC-------------------------------C---------------------
Q 048302 267 NALSGSLPEQLAELQIFTFSAGMNQLS-------------------------------G--------------------- 294 (545)
Q Consensus 267 n~~~~~~~~~l~~l~l~~l~l~~~~~~-------------------------------~--------------------- 294 (545)
|.+....+..+.......+++..+... .
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 777654444443333333333222110 0
Q ss_pred ------CCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCC-------------------Ccccc
Q 048302 295 ------PLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPI-------------------PRELC 349 (545)
Q Consensus 295 ------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-------------------~~~~~ 349 (545)
.....+....+++.+.+.++.+.... .+.....++.|++.+|.+.+.. +....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 00011122234444444444443211 1233344444444444433221 12234
Q ss_pred CCCCCcEEECcCCcCcc--cccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecC-hhhhcCCCC
Q 048302 350 DSGSLVEINLDGNMLSG--TIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIP-VSLWNSENL 425 (545)
Q Consensus 350 ~~~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~-~~~~~~~~L 425 (545)
.+++|+.+++++|.+.. ..+..+..+.+|+.+++..+......+. +...+ ++.+++..+......+ ..+..+.++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhcccccccccccccccccc
Confidence 56788888888887753 3445556778888888888877654443 44444 9999999888775544 457889999
Q ss_pred CeEeccCccCcccCChhhhccCCCCEEEccCCcCc-ccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCC
Q 048302 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLT-GQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGN 504 (545)
Q Consensus 426 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 504 (545)
+.++++.|.+.+..+..+..++.|++|++++|++. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 99999999999999989999999999999999854 45778899999999999999999999999999999999999999
Q ss_pred CcccccccccccCCCCCCeeeCCCCcccccCCCCccc
Q 048302 505 NNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSKPSS 541 (545)
Q Consensus 505 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~~~~ 541 (545)
|++++..|..+..+++|++|++++|++++.+|+.+..
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 9999888889999999999999999999988876654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.2e-42 Score=349.59 Aligned_cols=384 Identities=19% Similarity=0.168 Sum_probs=287.8
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccC-CcccCCCCCCCEEEcc
Q 048302 114 LKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTF-PSRLGDLTQLQDLGLS 192 (545)
Q Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~ 192 (545)
-+.++.+++.+. .+|. + .++|++|++++|.+.+..|..|.++++|++|++++|.+.+.+ +..+.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 356788888876 6665 2 378999999999998777888999999999999999886444 5678889999999999
Q ss_pred CCcCccccChhhhhCCCCCCEEEccCCcCcccCCcc--ccccCCCCceecccccccccCCcC-CCCCCCCCEEEccCCcC
Q 048302 193 DNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPE--IGNLKKLSDLYLGINQFTGSIPAE-LGNCRNLKAVVLSLNAL 269 (545)
Q Consensus 193 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 269 (545)
+|.+++..| ..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 88 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECT-TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccCh-hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999885445 67888899999999999888644444 788888999999888888776665 77888888888888888
Q ss_pred cccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcC--------CCCCCCCCEEEcccCcCc
Q 048302 270 SGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPE--------IGNCSMLKCISLSNNKLS 341 (545)
Q Consensus 270 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~~~~~~L~~L~ls~n~l~ 341 (545)
.+..+..+..+. .++++.|++++|.+.+..+.. +..+++|++|++++|.++
T Consensus 167 ~~~~~~~l~~l~---------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 167 KSICEEDLLNFQ---------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp SCCCTTTSGGGT---------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred cccChhhhhccc---------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 765554443321 146778888888877543332 234567778888888777
Q ss_pred cCCCccccCC---CCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccC---ccccEEEccCCcceeec
Q 048302 342 GPIPRELCDS---GSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISE---LPLKVLDLQYNNFTGVI 415 (545)
Q Consensus 342 ~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~ 415 (545)
+..|..+... ++|+.|++++|...+.... .+.+....+..+.. ..++.|++++|.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence 6666555433 6777777777765433111 01111111111221 22788888888888778
Q ss_pred ChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCC
Q 048302 416 PVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCI 495 (545)
Q Consensus 416 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 495 (545)
+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|+|++|.+++..|..|..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 88888888888888888888887787888888888888888888877777888888888888888888888888888888
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCC
Q 048302 496 SLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPS 537 (545)
Q Consensus 496 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~ 537 (545)
+|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 888888888888865556678888888888888888888874
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-41 Score=345.93 Aligned_cols=368 Identities=22% Similarity=0.254 Sum_probs=244.8
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEE
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSV-PSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLD 166 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 166 (545)
++|++|++++|.+.+..|..|.++++|++|++++|.+.+.+ +..|+.+++|++|++++|.+.+..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999998888889999999999999999987444 67799999999999999999988899999999999999
Q ss_pred eecCCCCccCCcc--cCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCcccccc--CCCCceeccc
Q 048302 167 FSGNGLNGTFPSR--LGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNL--KKLSDLYLGI 242 (545)
Q Consensus 167 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 242 (545)
+++|.+++..|.. +..+++|++|++++|.+++..|...+.++++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 88999999999999999866675558899999999999999998888888776 6889999999
Q ss_pred ccccccCCcC--------CCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 048302 243 NQFTGSIPAE--------LGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNN 314 (545)
Q Consensus 243 n~l~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 314 (545)
|.+.+..+.. +..+++|++|++++|.+.+..|..+.... ..++++.|++++|
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~--------------------~~~~L~~L~l~~~ 249 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI--------------------AGTKIQSLILSNS 249 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT--------------------TTCCEEEEECTTC
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc--------------------cccceeeEeeccc
Confidence 9888654433 23567888888888888877776654321 1245556666655
Q ss_pred cceecCCcCCCCCCCCCEEEcccCcCccCCCcccc--CCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeecc
Q 048302 315 QFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELC--DSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSI 392 (545)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 392 (545)
...+... ..+.+.+..+..+. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 4432110 01111111111111 1245566666666665555555555566666555555555444
Q ss_pred CccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCC
Q 048302 393 PEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTN 472 (545)
Q Consensus 393 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 472 (545)
|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++
T Consensus 316 ~~~-----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 316 DNA-----------------------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTT-----------------------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhH-----------------------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 433 334444444444444444444444444555555555555555444445555555
Q ss_pred CCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccc
Q 048302 473 IQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIP 512 (545)
Q Consensus 473 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 512 (545)
|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5555555555554444444555555555555555554443
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-41 Score=353.04 Aligned_cols=434 Identities=19% Similarity=0.180 Sum_probs=342.4
Q ss_pred CcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 048302 64 SRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSL 143 (545)
Q Consensus 64 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (545)
.+++.++++++.+.+..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+. .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 37999999999999887789999999999999999999888999999999999999999998 66766 8999999999
Q ss_pred ccccCCc-cCCccccCCCCCCEEEeecCCCCccCCcccCCCCCC--CEEEccCCcC--ccccChhhhhCCC-CCCEEEcc
Q 048302 144 RSNSFTG-EMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQL--QDLGLSDNLL--SGSLPVSLFTNLQ-SLSYLDVS 217 (545)
Q Consensus 144 ~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~~~~~l~-~L~~L~l~ 217 (545)
++|.+.+ .+|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..| ..+..+. ..-.++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEEEEEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc-ccccccCcceEEEEec
Confidence 9999986 3568999999999999999999854 34555555 9999999999 75555 4455543 11256778
Q ss_pred CCcCcccCCc-cccccCCCCceeccccc-----ccccCCcCCCCCCCCCEEEccCCcCcccCh----hhhccccccEEEc
Q 048302 218 NNLLSGNIPP-EIGNLKKLSDLYLGINQ-----FTGSIPAELGNCRNLKAVVLSLNALSGSLP----EQLAELQIFTFSA 287 (545)
Q Consensus 218 ~n~~~~~~~~-~l~~l~~L~~L~l~~n~-----l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~l~~l~l 287 (545)
+|.+.+.+++ .+..+++|+.+++++|. +.+. ...+..+++|+.++++++.+.+... ..+....++.+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 8887765543 45678899999999885 2222 2346778888889888887765332 2223335889999
Q ss_pred cCCCCCCCCcccc-----CCCCCCCEEEccCCcceecCCc-CCC---CCCCCCEEEcccCcCccCCCccccCCCCCcEEE
Q 048302 288 GMNQLSGPLPSWL-----GKWNQMDSLWLYNNQFVGRIPP-EIG---NCSMLKCISLSNNKLSGPIPRELCDSGSLVEIN 358 (545)
Q Consensus 288 ~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~-~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 358 (545)
++|.+.+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|++|++++|.+..... ...+++|++|+
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ 359 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLN 359 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEE
T ss_pred eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEE
Confidence 9999998888876 5555555555555554 2331 111 12579999999998764321 25788999999
Q ss_pred CcCCcCcccccccccCCCCCCEEEcccCeeee--ccCccccCcc-ccEEEccCCcceeecCh-hhhcCCCCCeEeccCcc
Q 048302 359 LDGNMLSGTIEDVFDRCTNLSELVLVNNRISG--SIPEYISELP-LKVLDLQYNNFTGVIPV-SLWNSENLMEFNAASNL 434 (545)
Q Consensus 359 L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~-L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~ 434 (545)
+++|.+++..+..+..+++|++|++++|++++ ..|..+..++ |+.|++++|++++.+|. .+..+++|+.|++++|+
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 99999998888889999999999999999986 3345566666 99999999999984554 57889999999999999
Q ss_pred CcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccc
Q 048302 435 LEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIP 512 (545)
Q Consensus 435 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 512 (545)
+.+..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9877665543 69999999999999 677777799999999999999995443348999999999999999886544
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-40 Score=336.34 Aligned_cols=395 Identities=25% Similarity=0.276 Sum_probs=205.4
Q ss_pred CCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCC-------------CEEEcccccCCccCC
Q 048302 87 LSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRL-------------ETLSLRSNSFTGEMP 153 (545)
Q Consensus 87 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~p 153 (545)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+.+| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 34555555555555 4555555555555555555555555555555555442 555555555552 23
Q ss_pred ccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccC
Q 048302 154 SELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLK 233 (545)
Q Consensus 154 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 233 (545)
.. .++|++|++++|.+++ +|.. +++|++|++++|.++ .++. ..++|++|++++|.+++ +| .++.++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 21 2455555555555553 3332 245555555555554 2331 01455555555555553 44 355555
Q ss_pred CCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q 048302 234 KLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLY 312 (545)
Q Consensus 234 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (545)
+|++|++++|++++ +|..+ .+|++|++++|.+.+ +| .+..+. ++.+++++|.+.+ +|.. .++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 55555555555553 33222 355555555555554 23 233333 4555555555443 2222 2488999999
Q ss_pred CCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeecc
Q 048302 313 NNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSI 392 (545)
Q Consensus 313 ~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 392 (545)
+|.+. .+| .++.+++|++|++++|.+++ +|. ..++|++|++++|++.+. +.. +++|++|++++|++++.
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE-
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc-
Confidence 99887 666 48888999999999998875 343 247889999999988864 322 47889999999988762
Q ss_pred CccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCC
Q 048302 393 PEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTN 472 (545)
Q Consensus 393 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 472 (545)
+... ..++.|++++|++++. +. ..++|+.|++++|++.+ +|.. +++|++|++++|+++ .+|. .+++
T Consensus 293 ~~~~--~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~ 358 (454)
T 1jl5_A 293 SELP--PNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN 358 (454)
T ss_dssp SCCC--TTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred cCcC--CcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence 2111 2388899999988753 21 12588899999988886 5543 578899999999888 4565 4688
Q ss_pred CCEEeCCCccccc--cCCcccccC-------------CCCCEEeCCCCcccc--cccccccCCCCCCeeeCCCCcccccC
Q 048302 473 IQILKLNSNFFDG--IIPMEFGDC-------------ISLNTLDLGNNNLNG--SIPEKIADLTQLQFLDLSHNNLSGPI 535 (545)
Q Consensus 473 L~~L~Ls~n~l~~--~~~~~l~~l-------------~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~i 535 (545)
|++|++++|++++ .+|..+..+ ++|++|++++|++++ .+| ++++.|.+.+|.+.+.+
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPY 432 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcc
Confidence 9999999998887 677777666 677777777777775 343 24556667777777766
Q ss_pred CCC
Q 048302 536 PSK 538 (545)
Q Consensus 536 p~~ 538 (545)
|..
T Consensus 433 ~~~ 435 (454)
T 1jl5_A 433 EFA 435 (454)
T ss_dssp ---
T ss_pred ccC
Confidence 643
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.4e-41 Score=323.11 Aligned_cols=245 Identities=30% Similarity=0.567 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcc--ccceeecC----CcEEEEEeCCCCCcc--ccCccCCCCCCCCEEE
Q 048302 23 EPKQERRSLVHFKNSLQNPQVLSGWNKTTRHCD--WFGVKCRH----SRVVSLVIQTQSLKG--PVSPFLYNLSSLRILD 94 (545)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~--w~~~~c~~----~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~ 94 (545)
+.++|++||++||+++.+|..+.+|+.+.+||. |.||.|+. .+|+.++++++.+.+ .+|+.+.++++|++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~ 82 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEE
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeee
Confidence 457899999999999988877899988889998 99999975 477777777777776 6666666666666666
Q ss_pred CCC-CCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCC
Q 048302 95 LSK-NLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLN 173 (545)
Q Consensus 95 ls~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 173 (545)
+++ |.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus 83 L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 663 6666666666666666666666666666566666666666666666666666556666666666666666666665
Q ss_pred ccCCcccCCCC-CCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcC
Q 048302 174 GTFPSRLGDLT-QLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAE 252 (545)
Q Consensus 174 ~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 252 (545)
+.+|..+..++ +|++|++++|++++.+| ..+..++ |++|++++|.+++..|..+..+++|+.|++++|.+++..+.
T Consensus 163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred CcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence 55555555555 55555555555554444 3344443 55555555555544444555555555555555554433332
Q ss_pred CCCCCCCCEEEccCCcCc
Q 048302 253 LGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 253 l~~l~~L~~L~l~~n~~~ 270 (545)
+..+++|++|++++|.+.
T Consensus 240 ~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CCCCTTCCEEECCSSCCE
T ss_pred ccccCCCCEEECcCCccc
Confidence 334444444444444433
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-39 Score=330.33 Aligned_cols=398 Identities=25% Similarity=0.302 Sum_probs=276.1
Q ss_pred CcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCC-------------CEEeCCCCcCcccCCc
Q 048302 64 SRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRL-------------KMLSLGENQLSGSVPS 130 (545)
Q Consensus 64 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~ 130 (545)
.++++++++++.+ +.+|..++++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 3788899999999 8999999999999999999999999999999998865 999999999984 554
Q ss_pred ccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCC
Q 048302 131 QLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQS 210 (545)
Q Consensus 131 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 210 (545)
. .++|++|++++|.+.+ +|.. .++|++|++++|.+.+ +|.. .++|++|++++|.++ .+| . +.++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp-~-~~~l~~ 154 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLP-E-LQNSSF 154 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCC-C-CTTCTT
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCc-c-cCCCCC
Confidence 2 4789999999999996 6653 4899999999999984 3321 279999999999999 488 3 899999
Q ss_pred CCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCC
Q 048302 211 LSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMN 290 (545)
Q Consensus 211 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~ 290 (545)
|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+.+ +|... -.++.+++++|
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n 225 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNN 225 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSS
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCC
Confidence 9999999999985 55543 599999999999996 56 58999999999999999986 33322 25889999999
Q ss_pred CCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccc
Q 048302 291 QLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIED 370 (545)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 370 (545)
.+. .+|. +..+++|++|++++|++.+ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++...
T Consensus 226 ~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~- 294 (454)
T 1jl5_A 226 ILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE- 294 (454)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-
T ss_pred cCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-
Confidence 998 5664 8899999999999999984 5542 4789999999999986 4443 4799999999999987432
Q ss_pred cccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCC
Q 048302 371 VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALE 450 (545)
Q Consensus 371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 450 (545)
..++|+.|++++|++++. +.. ...++.|++++|++++ +|.. +++|+.|++++|.+. .+|. .+++|+
T Consensus 295 ---~~~~L~~L~l~~N~l~~i-~~~--~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 ---LPPNLYYLNASSNEIRSL-CDL--PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp ---CCTTCCEEECCSSCCSEE-CCC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred ---cCCcCCEEECcCCcCCcc-cCC--cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 137899999999999863 221 1239999999999996 5543 589999999999998 4665 478999
Q ss_pred EEEccCCcCcc--ccccccccc-------------CCCCEEeCCCccccc--cCCcccccCCCCCEEeCCCCcccccccc
Q 048302 451 ELDLSSNMLTG--QIPKKIGNL-------------TNIQILKLNSNFFDG--IIPMEFGDCISLNTLDLGNNNLNGSIPE 513 (545)
Q Consensus 451 ~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 513 (545)
+|++++|++++ .+|..+..+ ++|++|++++|++++ .+| .+++.|.+.+|.+.+.++.
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcccc
Confidence 99999999998 788888877 899999999999987 444 3577888999998877665
Q ss_pred cccC
Q 048302 514 KIAD 517 (545)
Q Consensus 514 ~l~~ 517 (545)
....
T Consensus 435 ~~~~ 438 (454)
T 1jl5_A 435 AHET 438 (454)
T ss_dssp ----
T ss_pred CHHH
Confidence 4433
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-38 Score=321.72 Aligned_cols=364 Identities=18% Similarity=0.169 Sum_probs=256.0
Q ss_pred ccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccC
Q 048302 79 PVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGD 158 (545)
Q Consensus 79 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~ 158 (545)
..+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+.+. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3344567788888888888888764 4 688888888888888888753 3 78888888888888888854 3 778
Q ss_pred CCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCce
Q 048302 159 IKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDL 238 (545)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 238 (545)
+++|++|++++|.+++ +| ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..+++|++|
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 8888888888888875 33 7888888888888888874 44 667888888888888554444 46677788888
Q ss_pred ecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCccee
Q 048302 239 YLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVG 318 (545)
Q Consensus 239 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 318 (545)
++++|.+++ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--------------------------~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--------------------------DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--------------------------CCTTCTTCSEEECCSSCCSC
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee--------------------------ccccCCCCCEEECcCCcccc
Confidence 888888775 33 66777788887777776521 14566778888888887775
Q ss_pred cCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccC
Q 048302 319 RIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISE 398 (545)
Q Consensus 319 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 398 (545)
+| +..+++|+.|++++|.+++.. +..+++|+.|++++| +|+.+++++|.+.+.+| +..
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence 44 667777888888888777643 344566666666554 34455566665554444 223
Q ss_pred cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEe
Q 048302 399 LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILK 477 (545)
Q Consensus 399 ~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 477 (545)
++ |+.|++++|...+.+|. ...+|+.+++++| ++|++|++++|++++. .+..+++|++|+
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~ 345 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLS 345 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEE
T ss_pred cccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEE
Confidence 33 66666666665555543 2344555544443 5788888888888863 277888888888
Q ss_pred CCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCCCCcccc
Q 048302 478 LNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIPSKPSSY 542 (545)
Q Consensus 478 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~ 542 (545)
+++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.||..+...
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence 88888875 24566667888887765 244567778888888888888765443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-37 Score=315.81 Aligned_cols=345 Identities=26% Similarity=0.374 Sum_probs=222.7
Q ss_pred CCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEE
Q 048302 86 NLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSL 165 (545)
Q Consensus 86 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 165 (545)
++++++.|+++++.+.. +| .+..+++|++|++++|.+.+. +. ++.+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45678888888888754 34 477788888888888888754 33 8888888888888888875433 8888888888
Q ss_pred EeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccc
Q 048302 166 DFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQF 245 (545)
Q Consensus 166 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 245 (545)
++++|.+.+. +. +..+++|++|++++|.+. .++ .+..+++|++|++++ .+.+. ..+..+++|++|++++|.+
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCG--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CCh--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 8888888754 32 788888888888888877 344 267788888888863 33322 2367777788888877777
Q ss_pred cccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCC
Q 048302 246 TGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIG 325 (545)
Q Consensus 246 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 325 (545)
.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+.
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP-------------------------LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc-------------------------ccccCCCCEEECCCCCcccc--hhhh
Confidence 642 236667777777777776653211 34456777777777777632 3466
Q ss_pred CCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEE
Q 048302 326 NCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVL 404 (545)
Q Consensus 326 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L 404 (545)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..++ |+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 67777777777777765433 6666777777777777665543 5666777777777776654332 33333 5555
Q ss_pred EccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCcccc
Q 048302 405 DLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFD 484 (545)
Q Consensus 405 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 484 (545)
++++|++.+..+ +..+++|+.|++++|++.+. ..+.++++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 555555554433 44555555555555555443 234455555555555555554433 445555555555555554
Q ss_pred c
Q 048302 485 G 485 (545)
Q Consensus 485 ~ 485 (545)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-37 Score=315.51 Aligned_cols=346 Identities=26% Similarity=0.379 Sum_probs=284.2
Q ss_pred CCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCE
Q 048302 109 SNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQD 188 (545)
Q Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 188 (545)
..+++++.|+++++.+. .+| .+..+++|++|++++|.+.+. |. +.++++|++|++++|.+.+..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999987 455 478899999999999999855 44 8999999999999999986544 899999999
Q ss_pred EEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCc
Q 048302 189 LGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNA 268 (545)
Q Consensus 189 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 268 (545)
|++++|.++ .++. +.++++|++|++++|.+.+ + ..+..+++|++|+++ +.+.+. ..+..+++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 999999998 4552 7899999999999999875 3 358889999999996 444432 238889999999999988
Q ss_pred CcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccc
Q 048302 269 LSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPREL 348 (545)
Q Consensus 269 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 348 (545)
+.+. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+++. ..+
T Consensus 189 l~~~-------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 189 VSDI-------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp CCCC-------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CCCC-------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhh
Confidence 7631 225677899999999999885544 67789999999999998854 467
Q ss_pred cCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCe
Q 048302 349 CDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLME 427 (545)
Q Consensus 349 ~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~ 427 (545)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..++ |+.|++++|++.+..+ +..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 788999999999999987765 7889999999999999886544 55555 9999999999886544 778889999
Q ss_pred EeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcc
Q 048302 428 FNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNL 507 (545)
Q Consensus 428 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 507 (545)
|++++|++.+..| +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 9999998887665 67888999999999988865 468888999999999999887766 78888999999999988
Q ss_pred cc
Q 048302 508 NG 509 (545)
Q Consensus 508 ~~ 509 (545)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 85
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-37 Score=312.98 Aligned_cols=344 Identities=19% Similarity=0.191 Sum_probs=255.0
Q ss_pred CcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 048302 64 SRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSL 143 (545)
Q Consensus 64 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (545)
.+++.++++++.+.+. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++. + ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3789999999999874 4 689999999999999999874 3 89999999999999999864 3 899999999999
Q ss_pred ccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcc
Q 048302 144 RSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSG 223 (545)
Q Consensus 144 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 223 (545)
++|.+.+ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.++ +..+++|++|++++|.+++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 9999996 44 89999999999999999864 38899999999999996665664 7789999999999999986
Q ss_pred cCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCC
Q 048302 224 NIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKW 303 (545)
Q Consensus 224 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 303 (545)
+| ++.+++|+.|++++|.+++. .+..+++|++|++++|++.+ +| +..+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~------------------------ip--~~~l 232 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE------------------------ID--VTPL 232 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC------------------------CC--CTTC
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc------------------------cC--cccc
Confidence 44 88999999999999999964 38889999999999998873 22 5677
Q ss_pred CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEc
Q 048302 304 NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVL 383 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 383 (545)
++|+.|++++|++.+.. ++.+++|+.|+++.|. |+.+++++|.+.+.+| +..+++|+.|++
T Consensus 233 ~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEEC
Confidence 89999999999998643 4567778888776653 4455666666555444 345666666666
Q ss_pred ccCeeeeccCccccC--------cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEc
Q 048302 384 VNNRISGSIPEYISE--------LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDL 454 (545)
Q Consensus 384 ~~n~l~~~~~~~~~~--------~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 454 (545)
++|...+.+|..... .+ |++|++++|++++. + +..+++|+.|++++|++.+ ++.|..|++
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l 362 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPA 362 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSG
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccc
Confidence 666655444421111 11 55555555555542 1 4555555555555555543 123344445
Q ss_pred cCCcCcccccccccccCCCCEEeCCCccccccCCccc
Q 048302 455 SSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEF 491 (545)
Q Consensus 455 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 491 (545)
++|.+.+. ..+..|+.+++++|+++|.+|..+
T Consensus 363 ~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 363 LNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 55555433 234456666777777766666544
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=309.03 Aligned_cols=303 Identities=23% Similarity=0.207 Sum_probs=252.9
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+....+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999998888888999999999999999999888899999999999999999998666667889999999999
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG 247 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 247 (545)
++|.+.+..+..+..+++|++|++++|.+++ ++...+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 9999998888889999999999999999984 443678889999999999999987666778899999999999999998
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcccChhhhcc-ccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCC
Q 048302 248 SIPAELGNCRNLKAVVLSLNALSGSLPEQLAE-LQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326 (545)
Q Consensus 248 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 326 (545)
..+..+..+++|++|++++|...+.++..... ..+..+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 88888899999999999998877666654433 34777777777777655566777888888888888887776667778
Q ss_pred CCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeec
Q 048302 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGS 391 (545)
Q Consensus 327 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 391 (545)
+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 88888888888888877777788888888888888888777777777788888888888877643
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=306.22 Aligned_cols=319 Identities=19% Similarity=0.215 Sum_probs=222.8
Q ss_pred CEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecC
Q 048302 91 RILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGN 170 (545)
Q Consensus 91 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 170 (545)
+.++.+++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45677766664 3454442 57788888888887766777788888888888888777767777778888888888888
Q ss_pred CCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCC
Q 048302 171 GLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIP 250 (545)
Q Consensus 171 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 250 (545)
.+.+..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 7775555567777777777777777774333 566777777777777777776666667777777777777777765554
Q ss_pred cCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCC
Q 048302 251 AELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSML 330 (545)
Q Consensus 251 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 330 (545)
..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|...+.++.......+|
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~-----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAI-----------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEE-----------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hHhcccCCCcEEeCCCCcCcEe-----------------------ChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 5566677777777776665532 22345566777888887777666666665556677
Q ss_pred CEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCC
Q 048302 331 KCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYN 409 (545)
Q Consensus 331 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n 409 (545)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..|..+..++ |+.|++++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 7777777777755445667777777777777777777666777777777777777777766666666655 777777777
Q ss_pred cceeecChhhhcCCCCCeEeccCccCc
Q 048302 410 NFTGVIPVSLWNSENLMEFNAASNLLE 436 (545)
Q Consensus 410 ~l~~~~~~~~~~~~~L~~L~l~~n~~~ 436 (545)
++++..+..+..+++|+.|++++|++.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 766555555666666666766666665
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-35 Score=295.47 Aligned_cols=283 Identities=17% Similarity=0.173 Sum_probs=148.4
Q ss_pred CCCCCCCCCCCcc-ccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCC
Q 048302 43 VLSGWNKTTRHCD-WFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGE 121 (545)
Q Consensus 43 ~~~~w~~~~~~c~-w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~ 121 (545)
.+++|....+||. |.+..|.... +.+............-..++++++|+++++.+....+..+..+++|++|++++
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~---~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~ 78 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYD---VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78 (390)
T ss_dssp -----CCEECBCC------EEEES---CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT
T ss_pred CcCCCCCccceehhhhhhccceee---eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCC
Confidence 3567888777774 4444443211 11222111111122223456777777777776554444566777777777777
Q ss_pred CcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccC
Q 048302 122 NQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLP 201 (545)
Q Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 201 (545)
|.+.+..+..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+.++++|++|++++|.++ .++
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~ 157 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIE 157 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCC
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccC
Confidence 7777666667777777777777777777666666677777777777777666433333566666666666666665 333
Q ss_pred hhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc
Q 048302 202 VSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ 281 (545)
Q Consensus 202 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 281 (545)
...+.++++|++|++++|.+++. .+..+++|++|++++|.+++. ...
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~------------------------- 204 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIP------------------------- 204 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECC-------------------------
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCC-------------------------
Confidence 24455566666666666655432 133344444444444433311 111
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcC
Q 048302 282 IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDG 361 (545)
Q Consensus 282 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 361 (545)
+.|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 205 ----------------------~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 205 ----------------------IAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp ----------------------SSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ----------------------CcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 2344445554444322 11 1124555555555555532 3444555555555555
Q ss_pred CcCcccccccccCCCCCCEEEcccCeee
Q 048302 362 NMLSGTIEDVFDRCTNLSELVLVNNRIS 389 (545)
Q Consensus 362 n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 389 (545)
|.+.+..+..|..+++|++|++++|+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 258 NELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred CcCCCcChhHccccccCCEEECCCCcCc
Confidence 5555555555555555555555555443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-34 Score=303.56 Aligned_cols=347 Identities=19% Similarity=0.196 Sum_probs=194.1
Q ss_pred CCCCCCCCCCCCcc----ccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEE
Q 048302 42 QVLSGWNKTTRHCD----WFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKML 117 (545)
Q Consensus 42 ~~~~~w~~~~~~c~----w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L 117 (545)
..+++|.+..+||. |.++.|+. .++....... ....-..+.+++.++++++.+....+..+.++++|++|
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~----~i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L 80 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDV----HIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSC----EECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEE
T ss_pred ccccCCCCCCcCcccCcCceeEecCc----eecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEE
Confidence 35678888777774 55444431 1111111111 11112245677888888887766555567777888888
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCc
Q 048302 118 SLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLS 197 (545)
Q Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 197 (545)
++++|.+.+..|..|+.+++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.++
T Consensus 81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 88888887766777778888888888888777666666777777777777777777544445677777777777777776
Q ss_pred cccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhh
Q 048302 198 GSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQL 277 (545)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 277 (545)
+ ++...+.++++|++|++++|.+++. .+..+++|+.|++++|.+++ +...++|+.|++++|.+
T Consensus 161 ~-~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l-------- 223 (597)
T 3oja_B 161 R-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI-------- 223 (597)
T ss_dssp B-CCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC--------
T ss_pred C-CChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc--------
Confidence 4 3335566677777777777766543 23445555555555555442 12223444444444443
Q ss_pred ccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEE
Q 048302 278 AELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEI 357 (545)
Q Consensus 278 ~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 357 (545)
....+ .+ .++|+.|++++|.+++ +..+..+++|++|
T Consensus 224 ---------------------------------------~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L 259 (597)
T 3oja_B 224 ---------------------------------------NVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEV 259 (597)
T ss_dssp ---------------------------------------CEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred ---------------------------------------ccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEE
Confidence 32111 11 1345556666655553 2445556666666
Q ss_pred ECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCc
Q 048302 358 NLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLE 436 (545)
Q Consensus 358 ~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 436 (545)
++++|.+.+..+..|..+++|+.|++++|.+++. |..+..++ |+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 6666666666566666666666666666665532 22222222 444444444443 23333444445555555555444
Q ss_pred ccCChhhhccCCCCEEEccCCcCc
Q 048302 437 GSLSWEIGNAVALEELDLSSNMLT 460 (545)
Q Consensus 437 ~~~~~~~~~~~~L~~L~L~~n~l~ 460 (545)
+.. +..++.|++|++++|.+.
T Consensus 338 ~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 338 TLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCC---CCTTCCCSEEECCSSCEE
T ss_pred CcC---hhhcCCCCEEEeeCCCCC
Confidence 321 333444444555444444
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-34 Score=284.22 Aligned_cols=309 Identities=19% Similarity=0.215 Sum_probs=183.5
Q ss_pred CCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCce
Q 048302 159 IKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDL 238 (545)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 238 (545)
++++++|+++++.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 466677777776666443334566666777777666666 3443456666666666666666665555566666666666
Q ss_pred ecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCccee
Q 048302 239 YLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVG 318 (545)
Q Consensus 239 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 318 (545)
++++|.++...+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-----------------------IEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-----------------------CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-----------------------cChhhccCCCCCCEEECCCCcCCc
Confidence 666666664333345666666666666665542 223345556677777777777664
Q ss_pred cCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccC
Q 048302 319 RIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISE 398 (545)
Q Consensus 319 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 398 (545)
. .+..+++|+.|++++|.+++ +...++|++|++++|.+...... ..++|+.|++++|.+++. ..+..
T Consensus 180 ~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 180 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred c---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcC
Confidence 3 24456667777777776653 22334667777777766654322 235666666666666542 23444
Q ss_pred cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEe
Q 048302 399 LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILK 477 (545)
Q Consensus 399 ~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 477 (545)
.+ |++|++++|.+.+..|..+..+++|+.|++++|++.+ ++..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 44 6666666666666656666666666666666666653 2333445566666666666665 3444555666666666
Q ss_pred CCCccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 478 LNSNFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 478 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
+++|++++. + +..+++|++|++++|++..
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 666666543 1 4455666666666666654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-33 Score=275.64 Aligned_cols=307 Identities=22% Similarity=0.306 Sum_probs=199.5
Q ss_pred ccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCC
Q 048302 156 LGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKL 235 (545)
Q Consensus 156 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 235 (545)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++ + ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 4567778888888887763 33 3677778888888887776 4442 6777777777777777764 2 356667777
Q ss_pred CceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCc
Q 048302 236 SDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQ 315 (545)
Q Consensus 236 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 315 (545)
++|++++|.+.+. +. +..+++|++|++++|..... +..+..+++|++|++++|.
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~------------------------~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD------------------------LSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC------------------------CGGGTTCTTCCEEECCSSC
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc------------------------ccchhhCCCCcEEEecCCC
Confidence 7777777766632 22 56666666666666643311 1124455556666666555
Q ss_pred ceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCcc
Q 048302 316 FVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEY 395 (545)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 395 (545)
+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~------------------ 222 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR------------------ 222 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT------------------
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCc------------------
Confidence 542211 4455555555555555543221 4444555555555554443322 344444
Q ss_pred ccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCE
Q 048302 396 ISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQI 475 (545)
Q Consensus 396 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 475 (545)
|+.|++++|++++..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++
T Consensus 223 -----L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 223 -----LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp -----CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred -----CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 5555555555543322 66777888888888877653 3577788899999999988854 45788889999
Q ss_pred EeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCccc
Q 048302 476 LKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 476 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 532 (545)
|++++|.+.+..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999888888888889999999999999886655 778899999999999876
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.1e-33 Score=275.26 Aligned_cols=308 Identities=21% Similarity=0.316 Sum_probs=241.5
Q ss_pred ccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCC
Q 048302 131 QLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQS 210 (545)
Q Consensus 131 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 210 (545)
.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++ .++ .+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch--HHcCCCc
Confidence 3457899999999999998 444 488999999999999999854 33 999999999999999998 454 4889999
Q ss_pred CCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCC
Q 048302 211 LSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMN 290 (545)
Q Consensus 211 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~ 290 (545)
|++|++++|.+.+. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~----------------- 171 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT----------------- 171 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG-----------------
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch-----------------
Confidence 99999999999854 33 889999999999999766444 44889999999999999876321
Q ss_pred CCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccc
Q 048302 291 QLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIED 370 (545)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 370 (545)
. +..+++|++|++++|.+.+. +. +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 172 -------~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 172 -------P-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp -------G-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred -------h-hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 1 56778999999999998743 33 7889999999999999986544 7889999999999999987655
Q ss_pred cccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCC
Q 048302 371 VFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALE 450 (545)
Q Consensus 371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 450 (545)
+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI-------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred -hhcCCCCCEEECCCCccCCC-------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 78899999999999887642 1234455666666666665543 2466677777
Q ss_pred EEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccc
Q 048302 451 ELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 451 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
+|++++|++++..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776666677777777777777777776544 667777777777777765
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-33 Score=293.74 Aligned_cols=309 Identities=20% Similarity=0.219 Sum_probs=172.5
Q ss_pred CCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCce
Q 048302 159 IKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDL 238 (545)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 238 (545)
+.+++.+++++|.+....+..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..|..++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4566666666666654444445566666666666666653 333455666666666666666665555555666666666
Q ss_pred ecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCccee
Q 048302 239 YLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVG 318 (545)
Q Consensus 239 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 318 (545)
++++|.+++..+..|..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-----------------------IEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-----------------------CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-----------------------CChhhhhcCCcCcEEECcCCCCCC
Confidence 666666664444445556666666666555543 223344555666666666666653
Q ss_pred cCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccC
Q 048302 319 RIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISE 398 (545)
Q Consensus 319 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 398 (545)
. .+..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..
T Consensus 186 ~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 186 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG
T ss_pred c---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc
Confidence 3 23445666666666665543 223445666666666665443322 24566666666665532 33333
Q ss_pred cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEe
Q 048302 399 LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILK 477 (545)
Q Consensus 399 ~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 477 (545)
++ |+.|++++|.+.+..|..+..+++|+.|++++|.+.+ +|..+..+++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 34 5566666666555555555555556666665555554 2333444555555566555555 3444555555555555
Q ss_pred CCCccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 478 LNSNFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 478 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
|++|.+.+.. +..+++|+.|++++|++.+
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 5555554331 3445555555555555543
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.7e-36 Score=306.30 Aligned_cols=205 Identities=20% Similarity=0.141 Sum_probs=98.0
Q ss_pred CCCEEEcccCcCccC----CCccccCCCCCcEEECcCCcCcccc-----cccccCCCCCCEEEcccCeeeec----cCcc
Q 048302 329 MLKCISLSNNKLSGP----IPRELCDSGSLVEINLDGNMLSGTI-----EDVFDRCTNLSELVLVNNRISGS----IPEY 395 (545)
Q Consensus 329 ~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~ 395 (545)
+|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444444444444432 2333334444444444444443321 11122344455555555444432 2222
Q ss_pred ccCcc-ccEEEccCCcceeecChhhh-----cCCCCCeEeccCccCccc----CChhhhccCCCCEEEccCCcCcccccc
Q 048302 396 ISELP-LKVLDLQYNNFTGVIPVSLW-----NSENLMEFNAASNLLEGS----LSWEIGNAVALEELDLSSNMLTGQIPK 465 (545)
Q Consensus 396 ~~~~~-L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~ 465 (545)
+...+ |+.|++++|.+++..+..+. ..++|+.|++++|.+.+. ++..+..+++|++|++++|++++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 22222 45555555544432222222 124666666666665543 334445556666666666666654333
Q ss_pred cccc-----cCCCCEEeCCCccccc----cCCcccccCCCCCEEeCCCCcccccccccc-----cCCCCCCeeeCCCCcc
Q 048302 466 KIGN-----LTNIQILKLNSNFFDG----IIPMEFGDCISLNTLDLGNNNLNGSIPEKI-----ADLTQLQFLDLSHNNL 531 (545)
Q Consensus 466 ~~~~-----l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l 531 (545)
.+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++.....+ ....+|+.|++.++.+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 3322 4566666666666664 455566666666666666666654322111 1123566666666555
Q ss_pred cc
Q 048302 532 SG 533 (545)
Q Consensus 532 ~~ 533 (545)
..
T Consensus 440 ~~ 441 (461)
T 1z7x_W 440 SE 441 (461)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-32 Score=265.50 Aligned_cols=248 Identities=29% Similarity=0.461 Sum_probs=216.6
Q ss_pred EEEccCCCCCC--CCccccCCCCCCCEEEccC-CcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECc
Q 048302 284 TFSAGMNQLSG--PLPSWLGKWNQMDSLWLYN-NQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLD 360 (545)
Q Consensus 284 ~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 360 (545)
.++++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 33444444444 4566677788899999985 88888888888889999999999999988888888889999999999
Q ss_pred CCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc--ccEEEccCCcceeecChhhhcCCCCCeEeccCccCccc
Q 048302 361 GNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP--LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS 438 (545)
Q Consensus 361 ~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 438 (545)
+|.+.+..|..+..+++|++|++++|++++.+|..+.... |+.|++++|++.+.+|..+..+. |+.|++++|.+.+.
T Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred CCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence 9999888888888899999999999999888888877764 89999999999988999988887 99999999999999
Q ss_pred CChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCC
Q 048302 439 LSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADL 518 (545)
Q Consensus 439 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 518 (545)
.|..+..+++|++|++++|++++.++. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 998999999999999999999876665 788999999999999999999999999999999999999999999886 889
Q ss_pred CCCCeeeCCCCc-cccc
Q 048302 519 TQLQFLDLSHNN-LSGP 534 (545)
Q Consensus 519 ~~L~~L~l~~n~-l~~~ 534 (545)
++|+.+++++|+ +.|.
T Consensus 291 ~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGSCGGGTCSSSEEEST
T ss_pred cccChHHhcCCCCccCC
Confidence 999999999999 6653
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7e-33 Score=269.42 Aligned_cols=264 Identities=21% Similarity=0.305 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHcC-CCC-CCCCCC----CCCCCCccccceeecC----------CcEEEEEeCCCCCccccCccCCCC
Q 048302 24 PKQERRSLVHFKNSL-QNP-QVLSGW----NKTTRHCDWFGVKCRH----------SRVVSLVIQTQSLKGPVSPFLYNL 87 (545)
Q Consensus 24 ~~~~~~~l~~~~~~~-~~~-~~~~~w----~~~~~~c~w~~~~c~~----------~~v~~l~l~~~~~~~~~~~~l~~l 87 (545)
..+++.||++||..+ .++ .+...| ....++|.|.|+.|.. .+|+.++++++.+. .+|+.+.++
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l 103 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL 103 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGG
T ss_pred CchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhC
Confidence 357899999999988 455 566788 4566799999999952 36677777776666 556666666
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccC---------
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGD--------- 158 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~--------- 158 (545)
++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|++.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 77777777776665 56666666677777777777666 56666666677777777766666666665543
Q ss_pred CCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCce
Q 048302 159 IKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDL 238 (545)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 238 (545)
+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+| ..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 666666666666665 55555666666666666666665 344 235566666666666666666666666666666666
Q ss_pred ecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcc
Q 048302 239 YLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316 (545)
Q Consensus 239 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 316 (545)
++++|.+.+.+|..+..+++|++|++++|.+. +.+|.++..+++++.+++..+.+
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-----------------------~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL-----------------------SRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC-----------------------CCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCch-----------------------hhccHHHhhccCceEEeCCHHHH
Confidence 66666665566666666666666666665555 45556666667777777776544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1e-30 Score=255.27 Aligned_cols=270 Identities=25% Similarity=0.346 Sum_probs=176.4
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++.+++|++|++++|.+. .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 56777777777776666666777777777777777777666777777777777777777776 4554443 67777777
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCcc-ccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSG-SLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFT 246 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 246 (545)
++|.+.+..+..+.++++|++|++++|.+.. .+....+.++++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 7777776555567777777777777776642 1222556667777777777776663 443332 56666777776666
Q ss_pred ccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCC
Q 048302 247 GSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326 (545)
Q Consensus 247 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 326 (545)
+..+..+..+++|++|++++|.+.+.. +.++..+++|++|++++|.+. .+|..+..
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVD-----------------------NGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEEC-----------------------TTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeC-----------------------hhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 665666666666666666666655322 233455667777777777776 66666777
Q ss_pred CCCCCEEEcccCcCccCCCccccC------CCCCcEEECcCCcCcc--cccccccCCCCCCEEEcccCe
Q 048302 327 CSMLKCISLSNNKLSGPIPRELCD------SGSLVEINLDGNMLSG--TIEDVFDRCTNLSELVLVNNR 387 (545)
Q Consensus 327 ~~~L~~L~ls~n~l~~~~~~~~~~------~~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~ 387 (545)
+++|++|++++|.+++..+..++. .+.++.+++++|++.. ..+..|..+++++.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777777777777655555543 2566777777776643 445566667777777776663
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.5e-31 Score=258.52 Aligned_cols=244 Identities=24% Similarity=0.310 Sum_probs=138.6
Q ss_pred CCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEee
Q 048302 89 SLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFS 168 (545)
Q Consensus 89 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 168 (545)
+++.++++++.+. .+|..+. +.|++|++++|.+++..+..|+.+++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677777777764 3444332 577777777777776666677777777777777777776667777777777777777
Q ss_pred cCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcc--cCCccccccCCCCceeccccccc
Q 048302 169 GNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSG--NIPPEIGNLKKLSDLYLGINQFT 246 (545)
Q Consensus 169 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~ 246 (545)
+|.++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 77776 3444443 67777777777776 4554566677777777777776642 44455555666666666666555
Q ss_pred ccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCC
Q 048302 247 GSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGN 326 (545)
Q Consensus 247 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 326 (545)
. +|..+. ++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKV-----------------------DAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEE-----------------------CTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred c-CCcccc--ccCCEEECCCCcCCcc-----------------------CHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 2 332221 4444444444444321 1222333344444444444444433333444
Q ss_pred CCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcc
Q 048302 327 CSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSG 366 (545)
Q Consensus 327 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~ 366 (545)
+++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 444444444444444 333334444444444444444443
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7.9e-35 Score=298.34 Aligned_cols=361 Identities=20% Similarity=0.202 Sum_probs=241.2
Q ss_pred CCCCEEEcccccCCccCCc-cccCCCCCCEEEeecCCCCc----cCCcccCCCCCCCEEEccCCcCccccChhhhhCCC-
Q 048302 136 TRLETLSLRSNSFTGEMPS-ELGDIKQLKSLDFSGNGLNG----TFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQ- 209 (545)
Q Consensus 136 ~~L~~L~L~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~- 209 (545)
++|++|++++|++...... .+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566666666666533222 24556666666666666653 23344555566666666666554322222223333
Q ss_pred ---CCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEE
Q 048302 210 ---SLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFS 286 (545)
Q Consensus 210 ---~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~ 286 (545)
+|++|++++|.++.... ..++..+..+++|++|++++|.+.+..+..+...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------ 136 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG------ 136 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH------
T ss_pred CCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHH------
Confidence 35555555554442100 1234445555556666666555543333322210
Q ss_pred ccCCCCCCCCccccCCCCCCCEEEccCCcceecC----CcCCCCCCCCCEEEcccCcCccCCCcccc-----CCCCCcEE
Q 048302 287 AGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRI----PPEIGNCSMLKCISLSNNKLSGPIPRELC-----DSGSLVEI 357 (545)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L 357 (545)
.....++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++|
T Consensus 137 ------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 137 ------------LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp ------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred ------------HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 0112345666666666655422 33445567888888888887654444433 35699999
Q ss_pred ECcCCcCccc----ccccccCCCCCCEEEcccCeeeeccC-----ccccCcc-ccEEEccCCcceee----cChhhhcCC
Q 048302 358 NLDGNMLSGT----IEDVFDRCTNLSELVLVNNRISGSIP-----EYISELP-LKVLDLQYNNFTGV----IPVSLWNSE 423 (545)
Q Consensus 358 ~L~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~-L~~L~l~~n~l~~~----~~~~~~~~~ 423 (545)
++++|.+++. ++..+..+++|++|++++|.+++... ..+...+ |+.|++++|.+++. ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 9999999874 46667889999999999999875432 2222334 99999999999864 567788899
Q ss_pred CCCeEeccCccCcccCChhhhcc-----CCCCEEEccCCcCccc----ccccccccCCCCEEeCCCccccccCCccccc-
Q 048302 424 NLMEFNAASNLLEGSLSWEIGNA-----VALEELDLSSNMLTGQ----IPKKIGNLTNIQILKLNSNFFDGIIPMEFGD- 493 (545)
Q Consensus 424 ~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~- 493 (545)
+|+.|++++|.+.+..+..+... ++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 99999999999976655444432 6999999999999865 5667778899999999999998765554433
Q ss_pred ----CCCCCEEeCCCCcccc----cccccccCCCCCCeeeCCCCccccc
Q 048302 494 ----CISLNTLDLGNNNLNG----SIPEKIADLTQLQFLDLSHNNLSGP 534 (545)
Q Consensus 494 ----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 534 (545)
.++|++|++++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 6799999999999996 7788888999999999999999865
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.1e-31 Score=259.12 Aligned_cols=249 Identities=21% Similarity=0.263 Sum_probs=136.7
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEcc
Q 048302 113 RLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLS 192 (545)
Q Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 192 (545)
++++++++++.+. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555444444 3343332 345555555555544444445555555555555555554444555555555555555
Q ss_pred CCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccccc--ccCCcCCCCCCCCCEEEccCCcCc
Q 048302 193 DNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFT--GSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 193 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
+|.++ .+|...+ ++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 55554 3442211 45555555555555443444555555555555555553 2344444444 5666666665554
Q ss_pred ccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccC
Q 048302 271 GSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCD 350 (545)
Q Consensus 271 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 350 (545)
+ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..
T Consensus 186 ~------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 186 G------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp S------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred c------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 2 111111 45666666666666555556667777777777777777666666677
Q ss_pred CCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccc
Q 048302 351 SGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYI 396 (545)
Q Consensus 351 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 396 (545)
+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 777777777777776 344456677777777777777765544443
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6e-31 Score=257.02 Aligned_cols=287 Identities=21% Similarity=0.280 Sum_probs=199.5
Q ss_pred EEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccc
Q 048302 67 VSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSN 146 (545)
Q Consensus 67 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 146 (545)
+.++++++.+. .+|..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 33444445444 344433 257888888888877666777888888888888888887777777888888888888888
Q ss_pred cCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCcc-ccChhhhhCCCCCCEEEccCCcCcccC
Q 048302 147 SFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSG-SLPVSLFTNLQSLSYLDVSNNLLSGNI 225 (545)
Q Consensus 147 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~ 225 (545)
.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++. .+....+..+ +|++|++++|.+++ +
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I 187 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence 777 5555444 678888888887776555667777888888888877752 1222445555 77777777777764 4
Q ss_pred CccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCC
Q 048302 226 PPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 305 (545)
Q Consensus 226 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~ 305 (545)
|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+.++..+++
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~ 242 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----------------------ENGSLSFLPT 242 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----------------------CTTGGGGCTT
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-----------------------ChhHhhCCCC
Confidence 44433 5777777777777766666777777777777777766532 3334566678
Q ss_pred CCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccC------CCCCcEEECcCCcCc--ccccccccCCCC
Q 048302 306 MDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCD------SGSLVEINLDGNMLS--GTIEDVFDRCTN 377 (545)
Q Consensus 306 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------~~~L~~L~L~~n~i~--~~~~~~~~~~~~ 377 (545)
|++|++++|++. .+|..+..+++|+.|++++|.+++..+..++. .+.++.+++++|++. +..+..|..+++
T Consensus 243 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 888888888887 67777788888888888888888666665544 356788888888776 556677778888
Q ss_pred CCEEEcccCe
Q 048302 378 LSELVLVNNR 387 (545)
Q Consensus 378 L~~L~l~~n~ 387 (545)
|+.+++++|+
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 8888887764
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.3e-34 Score=306.26 Aligned_cols=445 Identities=16% Similarity=0.109 Sum_probs=281.7
Q ss_pred CccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCC---CccCCcccC------------CCCCCCEE
Q 048302 53 HCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLL---FGQLSPQVS------------NLKRLKML 117 (545)
Q Consensus 53 ~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~---~~~~~~~~~------------~l~~L~~L 117 (545)
|++|.++.+...+ .+.+... .....+..+.++++|++|+++++.. .+.+|..++ .+++|++|
T Consensus 41 ck~W~~~~~~~~~--~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L 117 (592)
T 3ogk_B 41 CRRWFKIDSETRE--HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSV 117 (592)
T ss_dssp CHHHHHHHHHHCC--EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred hHHHHHhhhcccc--EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeE
Confidence 4479887543222 2333321 2222334456788899999987542 122333322 67888888
Q ss_pred eCCCCcCcccCCcccCC-CC-CCCEEEcccccC-Cc-cCCccccCCCCCCEEEeecCCCCcc----CCcccCCCCCCCEE
Q 048302 118 SLGENQLSGSVPSQLGL-LT-RLETLSLRSNSF-TG-EMPSELGDIKQLKSLDFSGNGLNGT----FPSRLGDLTQLQDL 189 (545)
Q Consensus 118 ~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n~~-~~-~~p~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L 189 (545)
++++|.+++..+..++. ++ +|++|++++|.. .. .++....++++|++|++++|.+.+. ++.....+++|++|
T Consensus 118 ~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L 197 (592)
T 3ogk_B 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197 (592)
T ss_dssp EEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEE
T ss_pred EeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEE
Confidence 88888877655555554 33 488888888762 11 1222234678888888888877654 33344567888888
Q ss_pred EccCCcCc----cccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccccc---ccCCcCCCCCCCCCEE
Q 048302 190 GLSDNLLS----GSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFT---GSIPAELGNCRNLKAV 262 (545)
Q Consensus 190 ~l~~n~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L 262 (545)
++++|.++ +.++ ..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.+
T Consensus 198 ~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 198 NFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp ECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEE
T ss_pred EeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccccc
Confidence 88888876 2233 445677888888888888774 5677788888888888753322 2334556677788888
Q ss_pred EccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCC-cCCCCCCCCCEEEcccCcCc
Q 048302 263 VLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIP-PEIGNCSMLKCISLSNNKLS 341 (545)
Q Consensus 263 ~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~l~ 341 (545)
+++++... .++..+..+++|++|++++|.+.+... ..+..+++|++|+++++...
T Consensus 276 ~l~~~~~~------------------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 276 GLSYMGPN------------------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp EETTCCTT------------------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred Cccccchh------------------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence 77764221 344445566777788887777543322 22466778888888733222
Q ss_pred cCCCccccCCCCCcEEECcC-----------CcCccc-ccccccCCCCCCEEEcccCeeeeccCccccC-cc-ccEEEcc
Q 048302 342 GPIPRELCDSGSLVEINLDG-----------NMLSGT-IEDVFDRCTNLSELVLVNNRISGSIPEYISE-LP-LKVLDLQ 407 (545)
Q Consensus 342 ~~~~~~~~~~~~L~~L~L~~-----------n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~-L~~L~l~ 407 (545)
+.++.....+++|++|++++ +.+++. .......+++|++|+++.|.+++..+..+.. .+ |+.|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 22333335567788888873 455433 2223445778888888777777655554443 44 7788775
Q ss_pred ----CCcceee-----cChhhhcCCCCCeEeccCcc--CcccCChhhh-ccCCCCEEEccCCcCccc-ccccccccCCCC
Q 048302 408 ----YNNFTGV-----IPVSLWNSENLMEFNAASNL--LEGSLSWEIG-NAVALEELDLSSNMLTGQ-IPKKIGNLTNIQ 474 (545)
Q Consensus 408 ----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 474 (545)
.|.+++. ++..+.++++|+.|+++.|. +.+..+..+. .+++|++|++++|++++. ++..+.++++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 4556543 33446778889999887543 5554444443 378899999999888763 344557788899
Q ss_pred EEeCCCcccccc-CCcccccCCCCCEEeCCCCcccccccccc-cCCCCCCeeeC
Q 048302 475 ILKLNSNFFDGI-IPMEFGDCISLNTLDLGNNNLNGSIPEKI-ADLTQLQFLDL 526 (545)
Q Consensus 475 ~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l 526 (545)
+|+|++|.+++. ++..+..+++|++|++++|+++......+ ..++.+....+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999987654 33344678889999999998876533333 34565544433
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.7e-32 Score=288.54 Aligned_cols=407 Identities=14% Similarity=0.087 Sum_probs=282.0
Q ss_pred CcccCCCCCCCEEeCCCCcCc---ccCCcccC------------CCCCCCEEEcccccCCccCCccccC-CC-CCCEEEe
Q 048302 105 SPQVSNLKRLKMLSLGENQLS---GSVPSQLG------------LLTRLETLSLRSNSFTGEMPSELGD-IK-QLKSLDF 167 (545)
Q Consensus 105 ~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~------------~l~~L~~L~L~~n~~~~~~p~~l~~-l~-~L~~L~l 167 (545)
+..+..+++|++|+++++... +.+|..++ .+++|++|++++|.+.+..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 345567888999999876421 23343333 5777888888887766554454544 33 3888888
Q ss_pred ecCCC-Cc-cCCcccCCCCCCCEEEccCCcCccc----cChhhhhCCCCCCEEEccCCcCcc----cCCccccccCCCCc
Q 048302 168 SGNGL-NG-TFPSRLGDLTQLQDLGLSDNLLSGS----LPVSLFTNLQSLSYLDVSNNLLSG----NIPPEIGNLKKLSD 237 (545)
Q Consensus 168 ~~n~l-~~-~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~ 237 (545)
++|.. .. .++....++++|++|++++|.+++. ++ .....+++|++|++++|.+++ .++..+.++++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH-HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 77751 11 1222234677788888887776543 22 344567777888887777752 33344556777777
Q ss_pred eecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcce
Q 048302 238 LYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFV 317 (545)
Q Consensus 238 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 317 (545)
|++++|.+.+ ++..+..+++|++|+++..... .+ .+..+..+..+++|+.++++++...
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~------------------~~~~~~~l~~~~~L~~L~l~~~~~~ 283 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG------------------MPEKYMNLVFPRKLCRLGLSYMGPN 283 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT------------------CTTSSSCCCCCTTCCEEEETTCCTT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccc--cc------------------hHHHHHHhhccccccccCccccchh
Confidence 7777777664 4456666777777777652211 00 0133445677889999999886433
Q ss_pred ecCCcCCCCCCCCCEEEcccCcCccCCC-ccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEccc-----------
Q 048302 318 GRIPPEIGNCSMLKCISLSNNKLSGPIP-RELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVN----------- 385 (545)
Q Consensus 318 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~----------- 385 (545)
.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+..+..+..+++|++|++++
T Consensus 284 -~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 284 -EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp -TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred -HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 566677789999999999999765433 3457899999999994433333445557789999999994
Q ss_pred CeeeeccC-ccccCcc-ccEEEccCCcceeecChhhhc-CCCCCeEecc----CccCccc-----CChhhhccCCCCEEE
Q 048302 386 NRISGSIP-EYISELP-LKVLDLQYNNFTGVIPVSLWN-SENLMEFNAA----SNLLEGS-----LSWEIGNAVALEELD 453 (545)
Q Consensus 386 n~l~~~~~-~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~ 453 (545)
+.+++... .....++ |++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 45654322 2233344 999999999998776666665 9999999996 5666653 344467799999999
Q ss_pred ccCCc--Cccccccccc-ccCCCCEEeCCCcccccc-CCcccccCCCCCEEeCCCCccccc-ccccccCCCCCCeeeCCC
Q 048302 454 LSSNM--LTGQIPKKIG-NLTNIQILKLNSNFFDGI-IPMEFGDCISLNTLDLGNNNLNGS-IPEKIADLTQLQFLDLSH 528 (545)
Q Consensus 454 L~~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~ 528 (545)
+++|. +++..+..+. .+++|++|+|++|++++. ++..+.++++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 98765 6766555554 489999999999999863 445568899999999999998754 344557899999999999
Q ss_pred Cccccc
Q 048302 529 NNLSGP 534 (545)
Q Consensus 529 n~l~~~ 534 (545)
|++++.
T Consensus 523 n~it~~ 528 (592)
T 3ogk_B 523 YRASMT 528 (592)
T ss_dssp CBCCTT
T ss_pred CcCCHH
Confidence 998865
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.2e-30 Score=251.62 Aligned_cols=289 Identities=20% Similarity=0.199 Sum_probs=216.0
Q ss_pred CCCCCCCccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcc
Q 048302 47 WNKTTRHCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSG 126 (545)
Q Consensus 47 w~~~~~~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 126 (545)
|......|.|.++ |+. +++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+
T Consensus 23 ~~~~~~~C~~~~~-c~~--------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKG--------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp ----CCEECTTSE-EEC--------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred CCccCCCCCCCeE-eeC--------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 4445567889876 542 344444 3454443 589999999999987777789999999999999999998
Q ss_pred cCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCC-cccCCCCCCCEEEccCCc-CccccChhh
Q 048302 127 SVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFP-SRLGDLTQLQDLGLSDNL-LSGSLPVSL 204 (545)
Q Consensus 127 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~~ 204 (545)
..|..++.+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|. +. .++...
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~ 169 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKD 169 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHH
Confidence 888889999999999999999985544558899999999999999885433 478889999999999985 55 565567
Q ss_pred hhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccE
Q 048302 205 FTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFT 284 (545)
Q Consensus 205 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~ 284 (545)
+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----- 244 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST----- 244 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-----
Confidence 888899999999999998888888889999999999999886443334455788999999998887654433221
Q ss_pred EEccCCCCCCCCccccCCCCCCCEEEccCCccee----cCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECc
Q 048302 285 FSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVG----RIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLD 360 (545)
Q Consensus 285 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 360 (545)
....+.++.++++++.+.+ .+|..+..+++|+.|++++|.++...+..+..+++|++|+++
T Consensus 245 ---------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 245 ---------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp -----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ---------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 1234566777777776654 345567778888888888888884433345778888888888
Q ss_pred CCcCcccc
Q 048302 361 GNMLSGTI 368 (545)
Q Consensus 361 ~n~i~~~~ 368 (545)
+|++.+..
T Consensus 310 ~N~~~~~~ 317 (353)
T 2z80_A 310 TNPWDCSC 317 (353)
T ss_dssp SSCBCCCH
T ss_pred CCCccCcC
Confidence 88877654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.4e-28 Score=233.95 Aligned_cols=248 Identities=23% Similarity=0.217 Sum_probs=125.3
Q ss_pred EEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCcc--CCccccCCCCCCEEEeec
Q 048302 92 ILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGE--MPSELGDIKQLKSLDFSG 169 (545)
Q Consensus 92 ~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~l~~ 169 (545)
.++.+++.+. .+|..+. ++|++|++++|.+....+..++.+++|++|++++|.+... .|..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555543 2332221 4555555555555533333345555555555555555421 133444455555555555
Q ss_pred CCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc-c
Q 048302 170 NGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG-S 248 (545)
Q Consensus 170 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~ 248 (545)
|.+. .+|..+..+++|++|++++|.+++..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 5554 2334444555555555555555421111234444444444444444444333344444444444444444432 2
Q ss_pred CCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCC
Q 048302 249 IPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCS 328 (545)
Q Consensus 249 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 328 (545)
.|.. +..+++|++|++++|.+.+..|..+..++
T Consensus 167 ~~~~-----------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 167 LPDI-----------------------------------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp ECSC-----------------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred chhH-----------------------------------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 2333 33444555555555555544455555666
Q ss_pred CCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCC-CCCEEEcccCeeee
Q 048302 329 MLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCT-NLSELVLVNNRISG 390 (545)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~ 390 (545)
+|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..++ +|++|++++|++.+
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666666666666655555556666666666666666666665565553 66666666666654
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=241.88 Aligned_cols=279 Identities=20% Similarity=0.152 Sum_probs=217.8
Q ss_pred ccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEE
Q 048302 231 NLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLW 310 (545)
Q Consensus 231 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 310 (545)
.++.....+.+++.++ .+|..+. ++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-----------------------~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYI-----------------------SNSDLQRCVNLQALV 82 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEE-----------------------CTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCccc-----------------------CHHHhccCCCCCEEE
Confidence 3445555777777777 4565443 4788888888877643 233466778899999
Q ss_pred ccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCccccc-ccccCCCCCCEEEcccC-ee
Q 048302 311 LYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIE-DVFDRCTNLSELVLVNN-RI 388 (545)
Q Consensus 311 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n-~l 388 (545)
+++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+... ..+..+++|++|++++| .+
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 99999887777788889999999999999986666668888999999999998887655 57888999999999998 46
Q ss_pred eeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccc
Q 048302 389 SGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKI 467 (545)
Q Consensus 389 ~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 467 (545)
.+..+..+...+ |++|++++|++.+..|..+..+++|+.|++++|.+.......+..+++|++|++++|++++..+..+
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 666667777776 9999999999988888889999999999999998864443445568899999999999886544433
Q ss_pred ---cccCCCCEEeCCCccccc----cCCcccccCCCCCEEeCCCCccccccccc-ccCCCCCCeeeCCCCcccccCC
Q 048302 468 ---GNLTNIQILKLNSNFFDG----IIPMEFGDCISLNTLDLGNNNLNGSIPEK-IADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 468 ---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~ip 536 (545)
...+.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+.+|
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 346778888888888765 36677888999999999999998 56655 5888999999999999988765
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=231.23 Aligned_cols=230 Identities=21% Similarity=0.185 Sum_probs=154.6
Q ss_pred CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccC--CCccccCCCCCcEEECcCCcCcccccccccCCCCCCEE
Q 048302 304 NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGP--IPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSEL 381 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 381 (545)
+++++|++++|.+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+... +..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEE
Confidence 4677777777776633333456677777777777766532 244555667777777777776643 3346667777777
Q ss_pred EcccCeeeeccC-ccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcc-cCChhhhccCCCCEEEccCCc
Q 048302 382 VLVNNRISGSIP-EYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEG-SLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 382 ~l~~n~l~~~~~-~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~ 458 (545)
++++|.+++..+ ..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777777765443 3444544 7777777777776666667777777777777777765 456666777777777777777
Q ss_pred CcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCC-CCCeeeCCCCccccc
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT-QLQFLDLSHNNLSGP 534 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ 534 (545)
+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|..+..++ +|++|++++|++.+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7766666677777777777777777766666667777777777777777766666666663 777777777777654
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.9e-28 Score=235.27 Aligned_cols=225 Identities=21% Similarity=0.229 Sum_probs=189.1
Q ss_pred CCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEE
Q 048302 303 WNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382 (545)
Q Consensus 303 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 382 (545)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 357778888888877 66777777888888888888887 67777777888888888888877 5566677888888888
Q ss_pred cccCeeeeccCccccC---------cc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEE
Q 048302 383 LVNNRISGSIPEYISE---------LP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEEL 452 (545)
Q Consensus 383 l~~n~l~~~~~~~~~~---------~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 452 (545)
+++|++.+.+|..+.. ++ |++|++++|+++ .+|..+..+++|+.|++++|.+.+ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 8887777777766543 44 888899888888 778888999999999999999985 66678899999999
Q ss_pred EccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCccc
Q 048302 453 DLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 453 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 532 (545)
++++|++.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999998889999999999999999999999899999999999999999999999999999999999999999877665
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=3.8e-32 Score=287.56 Aligned_cols=448 Identities=13% Similarity=0.156 Sum_probs=268.2
Q ss_pred CccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCcc---CC------------cccCCCCCCCEE
Q 048302 53 HCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQ---LS------------PQVSNLKRLKML 117 (545)
Q Consensus 53 ~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~---~~------------~~~~~l~~L~~L 117 (545)
|++|.++... ....+++...... .....+.++++|++|+++++..... .| .....+++|++|
T Consensus 34 ck~W~~~~~~--~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L 110 (594)
T 2p1m_B 34 CKSWYEIERW--CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110 (594)
T ss_dssp CHHHHHHHHH--HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHhhhh--hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeE
Confidence 5578776221 3345555543322 1123456778899999998753221 11 112457889999
Q ss_pred eCCCCcCcccCCcccC-CCCCCCEEEcccc-cCCcc-CCccccCCCCCCEEEeecCCCCccCCcc----cCCCCCCCEEE
Q 048302 118 SLGENQLSGSVPSQLG-LLTRLETLSLRSN-SFTGE-MPSELGDIKQLKSLDFSGNGLNGTFPSR----LGDLTQLQDLG 190 (545)
Q Consensus 118 ~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~~~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~ 190 (545)
++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+.. ...+++|++|+
T Consensus 111 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~ 190 (594)
T 2p1m_B 111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190 (594)
T ss_dssp EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEE
T ss_pred EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEE
Confidence 9998888766665664 6788999999888 44422 3444457889999999888876543333 34677899999
Q ss_pred ccCCc--CccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccc-------cccccCCcCCCCCCCCCE
Q 048302 191 LSDNL--LSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGIN-------QFTGSIPAELGNCRNLKA 261 (545)
Q Consensus 191 l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-------~l~~~~~~~l~~l~~L~~ 261 (545)
+++|. +...........+++|++|++++|...+.++..+..+++|++|+++.+ .+.+ ++..+.++++|+.
T Consensus 191 l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~ 269 (594)
T 2p1m_B 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRC 269 (594)
T ss_dssp CTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCE
T ss_pred ecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCccc
Confidence 88886 221111123345688889988888332336677778888888885544 3332 2335667777777
Q ss_pred EE-ccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCC-cCCCCCCCCCEEEcccCc
Q 048302 262 VV-LSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIP-PEIGNCSMLKCISLSNNK 339 (545)
Q Consensus 262 L~-l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~ 339 (545)
+. +..... + .++..+..+++|++|++++|.+.+... ..+..+++|++|++++|
T Consensus 270 Ls~~~~~~~-~-----------------------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 270 LSGFWDAVP-A-----------------------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp EECCBTCCG-G-----------------------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred ccCCcccch-h-----------------------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 72 322111 1 122223345667777777776543211 12346677777777766
Q ss_pred CccC-CCccccCCCCCcEEECcC---------CcCcccccccc-cCCCCCCEEEcccCeeeeccCcccc-Ccc-ccEEEc
Q 048302 340 LSGP-IPRELCDSGSLVEINLDG---------NMLSGTIEDVF-DRCTNLSELVLVNNRISGSIPEYIS-ELP-LKVLDL 406 (545)
Q Consensus 340 l~~~-~~~~~~~~~~L~~L~L~~---------n~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~~~-L~~L~l 406 (545)
++.. ++.....+++|++|++++ +.+++.....+ ..+++|++|.+..|.+++.....+. ..+ |+.|++
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 3321 112222366777777632 34443322222 2367777777766666654443333 233 777777
Q ss_pred c--C----Ccceee-----cChhhhcCCCCCeEeccCccCcccCChhhhc-cCCCCEEEccCCcCcccccccc-cccCCC
Q 048302 407 Q--Y----NNFTGV-----IPVSLWNSENLMEFNAASNLLEGSLSWEIGN-AVALEELDLSSNMLTGQIPKKI-GNLTNI 473 (545)
Q Consensus 407 ~--~----n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L 473 (545)
+ + +.+++. ++..+..+++|+.|++++ .+.+..+..+.. +++|++|++++|.+++..+..+ .++++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 6 3 344421 222356778888888876 555544444544 7888888888888876554444 567888
Q ss_pred CEEeCCCccccccCCc-ccccCCCCCEEeCCCCcccccccccc-cCCCCCCeeeCCCCc
Q 048302 474 QILKLNSNFFDGIIPM-EFGDCISLNTLDLGNNNLNGSIPEKI-ADLTQLQFLDLSHNN 530 (545)
Q Consensus 474 ~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~ 530 (545)
++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 8888888888554333 34457888888888888754443444 556777666665554
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=238.11 Aligned_cols=247 Identities=24% Similarity=0.253 Sum_probs=153.5
Q ss_pred CCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeec
Q 048302 90 LRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSG 169 (545)
Q Consensus 90 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 169 (545)
.+.++.++..+. .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456777776664 4555443 5778888888888777777788888888888888887766667777788888888888
Q ss_pred CCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCc-CcccCCccccccCCCCceeccccccccc
Q 048302 170 NGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNL-LSGNIPPEIGNLKKLSDLYLGINQFTGS 248 (545)
Q Consensus 170 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 248 (545)
|.+++..+..+..+++|++|++++|.++ .++...+.++++|++|++++|. +....+..+..+++|++|++++|.++ .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 8777655556777777777777777776 5555666777777777777643 33222334555555666666555555 2
Q ss_pred CCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCC
Q 048302 249 IPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCS 328 (545)
Q Consensus 249 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 328 (545)
+| .+..+++| +.|++++|.+.+..+..+..++
T Consensus 200 ~~-~~~~l~~L-----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 200 IP-NLTPLIKL-----------------------------------------------DELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp CC-CCTTCSSC-----------------------------------------------CEEECTTSCCCEECTTTTTTCT
T ss_pred cc-ccCCCccc-----------------------------------------------CEEECCCCccCccChhhhccCc
Confidence 22 24444444 4444444444444444455555
Q ss_pred CCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeee
Q 048302 329 MLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRIS 389 (545)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 389 (545)
+|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5555555555555555555555555555555555555555555555555555555555554
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.9e-27 Score=239.24 Aligned_cols=247 Identities=25% Similarity=0.259 Sum_probs=143.3
Q ss_pred CCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeec
Q 048302 90 LRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSG 169 (545)
Q Consensus 90 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 169 (545)
.+.++.++..+. .+|..+. +++++|++++|.+.+..|..|+++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345666666553 3444332 5677777777777766667777777777777777777766666677777777777777
Q ss_pred CCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCc-CcccCCccccccCCCCceeccccccccc
Q 048302 170 NGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNL-LSGNIPPEIGNLKKLSDLYLGINQFTGS 248 (545)
Q Consensus 170 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 248 (545)
|.+++..+..+..+++|++|++++|.++ .++...+.++++|++|++++|. +....+..+..+++|++|++++|.+++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 7776555555666777777777777766 4554556666666666666633 332222344555555555555555542
Q ss_pred CCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCC
Q 048302 249 IPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCS 328 (545)
Q Consensus 249 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 328 (545)
+| .+..+++|+ .|++++|.+.+..|..+..++
T Consensus 211 ~~-~~~~l~~L~-----------------------------------------------~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 211 MP-NLTPLVGLE-----------------------------------------------ELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp CC-CCTTCTTCC-----------------------------------------------EEECTTSCCSEECGGGGTTCT
T ss_pred cc-ccccccccc-----------------------------------------------EEECcCCcCcccCcccccCcc
Confidence 22 234444444 444444444444444455555
Q ss_pred CCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeee
Q 048302 329 MLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRIS 389 (545)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 389 (545)
+|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5555555555555444555555555555555555555554455555555555555555544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.8e-27 Score=237.76 Aligned_cols=229 Identities=23% Similarity=0.194 Sum_probs=177.6
Q ss_pred CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEc
Q 048302 304 NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVL 383 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 383 (545)
++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46777888887777776777777788888888888777777777777778888888888777777777777788888888
Q ss_pred ccCeeeeccCccccCcc-ccEEEccCC-cceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcc
Q 048302 384 VNNRISGSIPEYISELP-LKVLDLQYN-NFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG 461 (545)
Q Consensus 384 ~~n~l~~~~~~~~~~~~-L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 461 (545)
++|++....+..+..++ |+.|++++| .+....+..+..+++|+.|++++|.+.+. | .+..+++|++|++++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 88877766666666666 788888774 44444445677888888888888888754 3 46778888888888888887
Q ss_pred cccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCccccc
Q 048302 462 QIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGP 534 (545)
Q Consensus 462 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 534 (545)
..|..|.++++|++|++++|.+.+..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 7788888888888888888888888888888888888888888888866666777888888888888887643
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=234.69 Aligned_cols=228 Identities=24% Similarity=0.220 Sum_probs=177.8
Q ss_pred CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEc
Q 048302 304 NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVL 383 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 383 (545)
++++.|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777888888877776677778888888888888887777777777888888888888887777777777888888888
Q ss_pred ccCeeeeccCccccCcc-ccEEEccCC-cceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcc
Q 048302 384 VNNRISGSIPEYISELP-LKVLDLQYN-NFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTG 461 (545)
Q Consensus 384 ~~n~l~~~~~~~~~~~~-L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 461 (545)
++|.+....+..+..++ |+.|++++| .+....+..+.++++|+.|++++|.+. .+| .+..+++|++|++++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 88887766666666666 888888774 444444456778888888888888877 334 46778888888888888887
Q ss_pred cccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccc
Q 048302 462 QIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 462 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 533 (545)
..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 777888888888888888888888888888888888888888888886666677788888888888888764
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.3e-27 Score=223.91 Aligned_cols=225 Identities=23% Similarity=0.210 Sum_probs=144.9
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCC
Q 048302 115 KMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDN 194 (545)
Q Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 194 (545)
++++++++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67788887776 556543 467888888888888666677888888888888888887776777888888888888888
Q ss_pred c-CccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccC
Q 048302 195 L-LSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSL 273 (545)
Q Consensus 195 ~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 273 (545)
. +. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence 6 55 454356677777777777777777655666666666777776666666544445555666666666555544
Q ss_pred hhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCC
Q 048302 274 PEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGS 353 (545)
Q Consensus 274 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 353 (545)
+..+..+..+++|++|++++|.+++..|..+..+++
T Consensus 167 --------------------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 167 --------------------------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp --------------------------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred --------------------------------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 222333444455555555555555444555555555
Q ss_pred CcEEECcCCcCcccccccccCCCCCCEEEcccCeeee
Q 048302 354 LVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISG 390 (545)
Q Consensus 354 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 390 (545)
|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 5555555555555444455555666666666665543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-26 Score=221.87 Aligned_cols=253 Identities=18% Similarity=0.162 Sum_probs=189.8
Q ss_pred cEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCC
Q 048302 283 FTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGN 362 (545)
Q Consensus 283 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 362 (545)
..++.+.+.+.. +|.. ..+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345666655553 3332 2467888888888888776677888888888888888888777888888888888888888
Q ss_pred c-CcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCC
Q 048302 363 M-LSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLS 440 (545)
Q Consensus 363 ~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 440 (545)
. +....+..|..+++|++|++++|.+++..+..+..++ |++|++++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 7776677788888888888888888877677777666 8888888888886666667788888888888888876666
Q ss_pred hhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCC
Q 048302 441 WEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQ 520 (545)
Q Consensus 441 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 520 (545)
..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++....+.. .....
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 66777888888888888888777778888888888888888888766666788888888888888877543321 11123
Q ss_pred CCeeeCCCCcccccCCCCc
Q 048302 521 LQFLDLSHNNLSGPIPSKP 539 (545)
Q Consensus 521 L~~L~l~~n~l~~~ip~~~ 539 (545)
++.+..+.+.+.+..|+.+
T Consensus 250 l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHCCSEECCCBEEESGGG
T ss_pred HHhcccccCccccCCchHh
Confidence 4455566777777777654
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=3.4e-26 Score=216.30 Aligned_cols=218 Identities=26% Similarity=0.289 Sum_probs=193.0
Q ss_pred CCCccccceeecCC-cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCC
Q 048302 51 TRHCDWFGVKCRHS-RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVP 129 (545)
Q Consensus 51 ~~~c~w~~~~c~~~-~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (545)
.+.|.|.|+.|... .++.++++++.++. +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 46899999998764 57789999988874 555443 689999999999988777789999999999999999986666
Q ss_pred cccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCC
Q 048302 130 SQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQ 209 (545)
Q Consensus 130 ~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 209 (545)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 157 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCc
Confidence 67799999999999999999777778899999999999999999888888999999999999999998 67767789999
Q ss_pred CCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCccc
Q 048302 210 SLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGS 272 (545)
Q Consensus 210 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 272 (545)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999977777889999999999999999977777788999999999999998754
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.6e-26 Score=239.74 Aligned_cols=284 Identities=26% Similarity=0.315 Sum_probs=180.8
Q ss_pred CCCCCCCCCcccccee--------ecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCE
Q 048302 45 SGWNKTTRHCDWFGVK--------CRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKM 116 (545)
Q Consensus 45 ~~w~~~~~~c~w~~~~--------c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~ 116 (545)
..|....++|.|.+.. |....++.++++++.+. .+|..+. ++|++|++++|.+.. +|. .+++|++
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~ 85 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRT 85 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCE
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCE
Confidence 4576667789986532 32235777888877776 5555444 677788888777753 443 4677777
Q ss_pred EeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcC
Q 048302 117 LSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLL 196 (545)
Q Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 196 (545)
|++++|.++ .+|. .+++|++|++++|.+.+ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+
T Consensus 86 L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 86 LEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQL 153 (622)
T ss_dssp EEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcC
Confidence 777777776 4554 56777777777777763 444 45677777777777763 4442 36777777777777
Q ss_pred ccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhh
Q 048302 197 SGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQ 276 (545)
Q Consensus 197 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 276 (545)
+ .+|. ..++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.+..
T Consensus 154 ~-~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~----- 215 (622)
T 3g06_A 154 A-SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS----- 215 (622)
T ss_dssp S-CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-----
T ss_pred C-CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-----
Confidence 6 4441 34567777777777763 44 345667777777777663 3322 3566777777666552
Q ss_pred hccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcE
Q 048302 277 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVE 356 (545)
Q Consensus 277 l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 356 (545)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|++
T Consensus 216 -------------------l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~ 265 (622)
T 3g06_A 216 -------------------LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLS 265 (622)
T ss_dssp -------------------CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred -------------------cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcE
Confidence 121 12567777777777663 44 344667777777777763 333 4566777
Q ss_pred EECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccc
Q 048302 357 INLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYI 396 (545)
Q Consensus 357 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 396 (545)
|++++|.++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 777777776 335556677777777777777766555443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.2e-28 Score=238.18 Aligned_cols=204 Identities=21% Similarity=0.224 Sum_probs=97.9
Q ss_pred CCCCCCEEEcccccCCccCCccc--cCCCCCCEEEeecCCCCccCCcccCCC-----CCCCEEEccCCcCccccChhhhh
Q 048302 134 LLTRLETLSLRSNSFTGEMPSEL--GDIKQLKSLDFSGNGLNGTFPSRLGDL-----TQLQDLGLSDNLLSGSLPVSLFT 206 (545)
Q Consensus 134 ~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~ 206 (545)
.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++++ ++...+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhc
Confidence 34444444444444444444433 4444444444444444433 3333333 444444444444442 2223344
Q ss_pred CCCCCCEEEccCCcCccc--CCccc--cccCCCCceecccccccc---cCCcCCCCCCCCCEEEccCCcCcccChhhhcc
Q 048302 207 NLQSLSYLDVSNNLLSGN--IPPEI--GNLKKLSDLYLGINQFTG---SIPAELGNCRNLKAVVLSLNALSGSLPEQLAE 279 (545)
Q Consensus 207 ~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 279 (545)
++++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+.+..|.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---- 246 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---- 246 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch----
Confidence 444444444444444332 11222 444555555555554441 1112223445555555555555432210
Q ss_pred ccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEEC
Q 048302 280 LQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINL 359 (545)
Q Consensus 280 l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 359 (545)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++
T Consensus 247 ------------------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 247 ------------------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp ------------------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred ------------------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 11223455666666666655 4555444 5666677777766654 43 666677777777
Q ss_pred cCCcCcc
Q 048302 360 DGNMLSG 366 (545)
Q Consensus 360 ~~n~i~~ 366 (545)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 7776653
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.6e-29 Score=267.41 Aligned_cols=421 Identities=17% Similarity=0.196 Sum_probs=273.1
Q ss_pred CEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcc---cCCcc------------cCCCCCCCEEEcccccCCccCCcc
Q 048302 91 RILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSG---SVPSQ------------LGLLTRLETLSLRSNSFTGEMPSE 155 (545)
Q Consensus 91 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~------------~~~l~~L~~L~L~~n~~~~~~p~~ 155 (545)
+.++++.+... .....+.++++|++|+++++.... ..|.. ...+++|++|++++|.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666554321 122345678889999998875321 12211 235677888888888776555555
Q ss_pred cc-CCCCCCEEEeecC-CCCcc-CCcccCCCCCCCEEEccCCcCccccC---hhhhhCCCCCCEEEccCCc--Cccc-CC
Q 048302 156 LG-DIKQLKSLDFSGN-GLNGT-FPSRLGDLTQLQDLGLSDNLLSGSLP---VSLFTNLQSLSYLDVSNNL--LSGN-IP 226 (545)
Q Consensus 156 l~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~--~~~~-~~ 226 (545)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+ ......+++|++|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 5778888888877 34322 33334467788888888877654222 0222356678888887775 2111 11
Q ss_pred ccccccCCCCceecccc-cccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCC
Q 048302 227 PEIGNLKKLSDLYLGIN-QFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 305 (545)
Q Consensus 227 ~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~ 305 (545)
.....+++|++|++++| .+.+ ++..+..+++|++|+++.+... ..+..+. .++..+..+++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~----------------~l~~~l~~~~~ 266 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAE-VRPDVYS----------------GLSVALSGCKE 266 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCC-CCHHHHH----------------HHHHHHHTCTT
T ss_pred HHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCc-cchhhHH----------------HHHHHHhcCCC
Confidence 22234577788887777 3333 5555666777777776654321 1111111 12234667888
Q ss_pred CCEE-EccCCcceecCCcCCCCCCCCCEEEcccCcCccCCC-ccccCCCCCcEEECcCCcCccc-ccccccCCCCCCEEE
Q 048302 306 MDSL-WLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIP-RELCDSGSLVEINLDGNMLSGT-IEDVFDRCTNLSELV 382 (545)
Q Consensus 306 L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~~~~L~~L~ 382 (545)
|+.+ .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. .+.....+++|++|+
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 8888 4443332 2344444567999999999999764432 23557899999999998 4432 333344689999999
Q ss_pred ccc---------CeeeeccCcccc-Ccc-ccEEEccCCcceeecChhhh-cCCCCCeEecc--C----ccCccc-----C
Q 048302 383 LVN---------NRISGSIPEYIS-ELP-LKVLDLQYNNFTGVIPVSLW-NSENLMEFNAA--S----NLLEGS-----L 439 (545)
Q Consensus 383 l~~---------n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~-----~ 439 (545)
+.+ +.+++.....+. ..+ |+.|.+..+.+++.....+. .+++|+.|+++ + +.+++. +
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 944 345433322222 234 99999988888876555554 68999999999 3 444421 2
Q ss_pred ChhhhccCCCCEEEccCCcCcccccccccc-cCCCCEEeCCCccccccCCccc-ccCCCCCEEeCCCCcccccccc-ccc
Q 048302 440 SWEIGNAVALEELDLSSNMLTGQIPKKIGN-LTNIQILKLNSNFFDGIIPMEF-GDCISLNTLDLGNNNLNGSIPE-KIA 516 (545)
Q Consensus 440 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~l~ 516 (545)
+..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++.....+ ..+++|++|++++|.+++.... ...
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 22367789999999987 777665556655 8999999999999977655555 7799999999999999755443 446
Q ss_pred CCCCCCeeeCCCCcccc
Q 048302 517 DLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 517 ~l~~L~~L~l~~n~l~~ 533 (545)
.+++|++|++++|+++.
T Consensus 504 ~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 504 KLETMRSLWMSSCSVSF 520 (594)
T ss_dssp GGGGSSEEEEESSCCBH
T ss_pred hCCCCCEEeeeCCCCCH
Confidence 68999999999999853
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-27 Score=229.35 Aligned_cols=264 Identities=20% Similarity=0.174 Sum_probs=192.3
Q ss_pred ceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcc
Q 048302 237 DLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQF 316 (545)
Q Consensus 237 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 316 (545)
..+++.+.+.......+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----------------------~~~~~~~l~~L~~L~Ls~n~l 70 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----------------------SAADLAPFTKLELLNLSSNVL 70 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-----------------------CHHHHTTCTTCCEEECTTSCC
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-----------------------CHHHhhCCCcCCEEECCCCcC
Confidence 344555555444444445566777777777766643 344556677888888888887
Q ss_pred eecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccc
Q 048302 317 VGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYI 396 (545)
Q Consensus 317 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 396 (545)
.+..+ +..+++|++|++++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+
T Consensus 71 ~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 71 YETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp EEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT
T ss_pred Ccchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh
Confidence 75443 777888888888888876432 3478888888888887765443 5678888888888887666666
Q ss_pred cCcc-ccEEEccCCcceeecChhh-hcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCC
Q 048302 397 SELP-LKVLDLQYNNFTGVIPVSL-WNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQ 474 (545)
Q Consensus 397 ~~~~-L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 474 (545)
...+ |++|++++|.+.+..+..+ ..+++|+.|++++|.+.+.. ....+++|++|++++|++++ +|..+..+++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 217 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCccc
Confidence 6666 8888888888887766665 46788888888888887552 23347889999999998884 445588888999
Q ss_pred EEeCCCccccccCCcccccCCCCCEEeCCCCccc-ccccccccCCCCCCeeeCCCC-cccccCCC
Q 048302 475 ILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN-GSIPEKIADLTQLQFLDLSHN-NLSGPIPS 537 (545)
Q Consensus 475 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n-~l~~~ip~ 537 (545)
+|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++| .+.|..|.
T Consensus 218 ~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999998884 5777888889999999999888 667777888888888888843 45555553
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.1e-24 Score=227.43 Aligned_cols=114 Identities=30% Similarity=0.373 Sum_probs=58.1
Q ss_pred CCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEee
Q 048302 89 SLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFS 168 (545)
Q Consensus 89 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 168 (545)
.++.|+++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4566666666654 4444443 56666666666655 3443 3455666666666555 3333 44555555555
Q ss_pred cCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCc
Q 048302 169 GNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLS 222 (545)
Q Consensus 169 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 222 (545)
+|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|++++|.++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA 154 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCC
Confidence 555553 222 3445555555555554 3431 1244444444444443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.9e-27 Score=227.49 Aligned_cols=225 Identities=20% Similarity=0.176 Sum_probs=194.9
Q ss_pred cCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCC
Q 048302 300 LGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 379 (545)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 4456789999999999997777789999999999999999987654 889999999999999988654 348999
Q ss_pred EEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhh-hccCCCCEEEccCCc
Q 048302 380 ELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEI-GNAVALEELDLSSNM 458 (545)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~L~~n~ 458 (545)
+|++++|.+++..+..+ ..|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|+
T Consensus 103 ~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 99999999987665543 239999999999998888889999999999999999998777766 478999999999999
Q ss_pred CcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCccc-ccCCC
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLS-GPIPS 537 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~ip~ 537 (545)
+++. + ....+++|++|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred Cccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 9855 3 334589999999999999965 455999999999999999999 67888999999999999999998 55544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.1e-27 Score=231.60 Aligned_cols=258 Identities=19% Similarity=0.171 Sum_probs=173.6
Q ss_pred ccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCc-ccChhhhccccccEEEccCCCCCCCCccccCCCCCCC
Q 048302 229 IGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS-GSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMD 307 (545)
Q Consensus 229 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~ 307 (545)
++..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+... ......+++|+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~----------------~~~~~~l~~L~ 98 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFG----------------ALRVLGISGLQ 98 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHH----------------HHHHHTTSCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHH----------------HHHhcCcCCcc
Confidence 44556777777777777 455544433 666677766663 2222211100 00011567888
Q ss_pred EEEccCCcceecCCcCC--CCCCCCCEEEcccCcCccCCCccccCC-----CCCcEEECcCCcCcccccccccCCCCCCE
Q 048302 308 SLWLYNNQFVGRIPPEI--GNCSMLKCISLSNNKLSGPIPRELCDS-----GSLVEINLDGNMLSGTIEDVFDRCTNLSE 380 (545)
Q Consensus 308 ~L~l~~n~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~~-----~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 380 (545)
+|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..|..+++|++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 88888888887777765 7788888888888888766 6666555 77888888888877777777777777777
Q ss_pred EEcccCeeeeccCccccCccccEEEccCCcceeecChh--hhcCCCCCeEeccCccCcc--cCC-hhhhccCCCCEEEcc
Q 048302 381 LVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVS--LWNSENLMEFNAASNLLEG--SLS-WEIGNAVALEELDLS 455 (545)
Q Consensus 381 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~l~~n~~~~--~~~-~~~~~~~~L~~L~L~ 455 (545)
|++++|++.+..+ .+.. +..+++|++|++++|.+.+ .++ ..+..+++|++|+++
T Consensus 178 L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 178 LDLSDNPELGERG---------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp EECCSCTTCHHHH---------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred EECCCCCcCcchH---------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 7777777654311 1111 2456667777777776652 122 234567788888888
Q ss_pred CCcCccccc-ccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccc
Q 048302 456 SNMLTGQIP-KKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 456 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 533 (545)
+|++++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 888886654 45566788888888888887 5666655 7888888888888854 55 7788888888888888875
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.6e-25 Score=208.29 Aligned_cols=208 Identities=25% Similarity=0.237 Sum_probs=114.6
Q ss_pred CCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcc
Q 048302 305 QMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLV 384 (545)
Q Consensus 305 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 384 (545)
++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555555444445555555555555
Q ss_pred cCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCccc-CChhhhccCCCCEEEccCCcCcccc
Q 048302 385 NNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGS-LSWEIGNAVALEELDLSSNMLTGQI 463 (545)
Q Consensus 385 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~ 463 (545)
+|.+. +..+..+..+++|+.|++++|.+.+. +|..+..+++|++|++++|++++..
T Consensus 109 ~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 109 ETNLA-----------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TSCCC-----------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCcc-----------------------ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 55544 33333455555666666666655542 3555666666666666666666554
Q ss_pred cccccccCCCC----EEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccccCC
Q 048302 464 PKKIGNLTNIQ----ILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 464 ~~~~~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ip 536 (545)
+..+..+++|+ +|++++|.+.+..+..+.. .+|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 45555555555 5666666666444433332 356666666666664444445566666666666666665554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.1e-26 Score=231.11 Aligned_cols=232 Identities=20% Similarity=0.190 Sum_probs=180.8
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcC
Q 048302 282 IFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDG 361 (545)
Q Consensus 282 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 361 (545)
+..+++++|.+.+..|..+..+++|++|++++|.+.+..| +..+++|++|++++|.+++.. ..++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 3344444444444555667788888889998888876554 788888999999988887533 237888999999
Q ss_pred CcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhh-cCCCCCeEeccCccCcccC
Q 048302 362 NMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLW-NSENLMEFNAASNLLEGSL 439 (545)
Q Consensus 362 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~ 439 (545)
|.+.+..+. .+++|+.|++++|.+++..|..+..++ |+.|++++|.+++..|..+. .+++|+.|++++|.+.+..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 988877654 357888999999988887777777766 88999999988887777775 7889999999999888663
Q ss_pred ChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccc-ccccccccCC
Q 048302 440 SWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN-GSIPEKIADL 518 (545)
Q Consensus 440 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l 518 (545)
+ ...+++|++|++++|++++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..+
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp C--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred c--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 3 34588899999999999854 4458888999999999999885 6777888889999999999887 6677777888
Q ss_pred CCCCeeeCC
Q 048302 519 TQLQFLDLS 527 (545)
Q Consensus 519 ~~L~~L~l~ 527 (545)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 888888775
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.7e-26 Score=233.23 Aligned_cols=223 Identities=20% Similarity=0.178 Sum_probs=195.9
Q ss_pred CCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEE
Q 048302 302 KWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSEL 381 (545)
Q Consensus 302 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 381 (545)
.+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 44589999999999998777889999999999999999987665 8899999999999999986543 3899999
Q ss_pred EcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhh-ccCCCCEEEccCCcCc
Q 048302 382 VLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIG-NAVALEELDLSSNMLT 460 (545)
Q Consensus 382 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~L~~n~l~ 460 (545)
++++|.+++..+..+ ..|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|++|+|++|.++
T Consensus 105 ~L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999987665433 2399999999999998898999999999999999999998888776 7999999999999999
Q ss_pred ccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCccc-ccCCC
Q 048302 461 GQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLS-GPIPS 537 (545)
Q Consensus 461 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~ip~ 537 (545)
+. + ....+++|++|+|++|.+++.. ..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|.
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 66 3 3446999999999999999754 45899999999999999999 47888999999999999999998 55543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.3e-23 Score=198.48 Aligned_cols=203 Identities=23% Similarity=0.246 Sum_probs=151.2
Q ss_pred CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEc
Q 048302 304 NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVL 383 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 383 (545)
...+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778888888887 5665443 57888888888888777777888888888888888888777777788888888888
Q ss_pred ccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCccc
Q 048302 384 VNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQ 462 (545)
Q Consensus 384 ~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 462 (545)
++|.+.+..+..+..++ |++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 88888765555555555 77777777777766666677777777777777777765555567777777777777777765
Q ss_pred ccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 463 IPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 463 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
.+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 55567777777777777777776555567777777777777777653
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.1e-23 Score=199.75 Aligned_cols=181 Identities=25% Similarity=0.302 Sum_probs=128.2
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888887766667888888888888888887666677888888888888888888776677888888888888
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCcc-ccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCC----ceeccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSG-SLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLS----DLYLGI 242 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~ 242 (545)
++|.+.+..+..++.+++|++|++++|.+++ .+| ..+.++++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 8888876666567778888888888887764 245 5567777777777777777766556666665555 555666
Q ss_pred ccccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 243 NQFTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 243 n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
|.+++..+..+. ..+|++|++++|.++
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLK 213 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred CcccccCccccC-CCcccEEECCCCcee
Confidence 665543333222 224555555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1e-23 Score=199.31 Aligned_cols=208 Identities=25% Similarity=0.297 Sum_probs=129.4
Q ss_pred cCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCC
Q 048302 300 LGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 379 (545)
...+++|+.|++.+|.+. .+ ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345677888888888775 22 3467778888888888887752 3667777888888888877777776677777777
Q ss_pred EEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
+|++++|.+++..+..+..++ |++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 777777777755555455444 6666666666655544445555555555555555554444445555555555555555
Q ss_pred CcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCC
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADL 518 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 518 (545)
+++..+..+..+++|++|++++|++.+ .+++|+.+++..|.++|.+|..+..+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 555444445555555555555555542 23445555555555555555554443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5e-23 Score=196.14 Aligned_cols=202 Identities=25% Similarity=0.232 Sum_probs=133.8
Q ss_pred cCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCC
Q 048302 300 LGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 379 (545)
+..++++++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677888888888776 5555443 5777888888887776677777777888888888877765432 5677777
Q ss_pred EEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
+|++++|.+. .+|..+..++ |++|++++|++++..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 4455454444 6667777666665555666666666666666666665555555666666666666666
Q ss_pred CcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccc
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
+++..+..|..+++|++|+|++|+++ .+|..+..+++|+.+++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66444444566666666666666665 44555555566666666666654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.6e-23 Score=198.02 Aligned_cols=181 Identities=27% Similarity=0.304 Sum_probs=103.8
Q ss_pred CCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCE
Q 048302 85 YNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKS 164 (545)
Q Consensus 85 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 164 (545)
.++++|+.|+++++.+... ..+..+++|++|++++|.+.+ + ..++.+++|++|++++|.+.+..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3455666666666655321 235556666666666666653 2 35566666666666666666555555566666666
Q ss_pred EEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccc
Q 048302 165 LDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQ 244 (545)
Q Consensus 165 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 244 (545)
|++++|.+.+..+..++.+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 666666666555555566666666666666665 3443445555666666666666654444445555566666666665
Q ss_pred ccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 245 FTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 245 l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
+++..+..+..+++|++|++++|.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc
Confidence 55544444555555555555555443
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6.8e-23 Score=191.32 Aligned_cols=189 Identities=28% Similarity=0.301 Sum_probs=101.2
Q ss_pred CCccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcc
Q 048302 52 RHCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQ 131 (545)
Q Consensus 52 ~~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (545)
+|+.|.|..|.. ..+.++.+++.+. .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..
T Consensus 3 ~Cp~~~gC~C~~-~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNE-GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEEG-GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcCC-CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 477899999953 2345666666555 2333332 45666666666665555555666666666666666665555555
Q ss_pred cCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCC
Q 048302 132 LGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSL 211 (545)
Q Consensus 132 ~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 211 (545)
+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCC
Confidence 555666666666666655444445555555555555555555444444455555555555555554 3332344444445
Q ss_pred CEEEccCCcCcccCCccccccCCCCceecccccc
Q 048302 212 SYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQF 245 (545)
Q Consensus 212 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 245 (545)
++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 5555544444433333344444444444444443
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=8.4e-25 Score=218.11 Aligned_cols=241 Identities=21% Similarity=0.256 Sum_probs=192.9
Q ss_pred CccccCCCCCCCEEEccCCcceec----CCcCCCCCCCCCEEEcccCc---CccCCCccc-------cCCCCCcEEECcC
Q 048302 296 LPSWLGKWNQMDSLWLYNNQFVGR----IPPEIGNCSMLKCISLSNNK---LSGPIPREL-------CDSGSLVEINLDG 361 (545)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~-------~~~~~L~~L~L~~ 361 (545)
++..+..+++|++|++++|.+... ++..+..+++|++|++++|. +++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445566778899999999988764 33447788999999999864 444555544 6789999999999
Q ss_pred CcCcc----cccccccCCCCCCEEEcccCeeeeccCccccC--------------ccccEEEccCCcce-eecC---hhh
Q 048302 362 NMLSG----TIEDVFDRCTNLSELVLVNNRISGSIPEYISE--------------LPLKVLDLQYNNFT-GVIP---VSL 419 (545)
Q Consensus 362 n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~L~~L~l~~n~l~-~~~~---~~~ 419 (545)
|.+++ .++..+..+++|++|++++|.++...+..+.. ..|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99987 46667888999999999999987544443333 24999999999987 3344 467
Q ss_pred hcCCCCCeEeccCccCcc-----cCChhhhccCCCCEEEccCCcCc----ccccccccccCCCCEEeCCCcccccc----
Q 048302 420 WNSENLMEFNAASNLLEG-----SLSWEIGNAVALEELDLSSNMLT----GQIPKKIGNLTNIQILKLNSNFFDGI---- 486 (545)
Q Consensus 420 ~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~---- 486 (545)
..+++|+.|++++|.+.+ ..+..+..+++|++|+|++|+++ ..+|..+..+++|++|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 789999999999999873 23336788999999999999996 56788889999999999999999876
Q ss_pred CCccccc--CCCCCEEeCCCCcccc----cccccc-cCCCCCCeeeCCCCcccccCC
Q 048302 487 IPMEFGD--CISLNTLDLGNNNLNG----SIPEKI-ADLTQLQFLDLSHNNLSGPIP 536 (545)
Q Consensus 487 ~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~ip 536 (545)
++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5566644 8999999999999997 477777 668999999999999997664
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.2e-25 Score=218.90 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=59.4
Q ss_pred EEccCCcCcccChhhhcccc-ccEEEccCCCCCCCCc----cccCCCC-CCCEEEccCCcceecCCcCCCCC-----CCC
Q 048302 262 VVLSLNALSGSLPEQLAELQ-IFTFSAGMNQLSGPLP----SWLGKWN-QMDSLWLYNNQFVGRIPPEIGNC-----SML 330 (545)
Q Consensus 262 L~l~~n~~~~~~~~~l~~l~-l~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~-----~~L 330 (545)
.+++.|.+++.+|..+.... ++.+++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45556666655555544444 5555555555544443 3444444 45555555555544333333322 455
Q ss_pred CEEEcccCcCccCCCccccC----C-CCCcEEECcCCcCcccccccc----cC-CCCCCEEEcccCeee
Q 048302 331 KCISLSNNKLSGPIPRELCD----S-GSLVEINLDGNMLSGTIEDVF----DR-CTNLSELVLVNNRIS 389 (545)
Q Consensus 331 ~~L~ls~n~l~~~~~~~~~~----~-~~L~~L~L~~n~i~~~~~~~~----~~-~~~L~~L~l~~n~l~ 389 (545)
++|++++|.+++..+..++. . ++|++|++++|.+++..+..+ .. +++|++|++++|.++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 55555555554443332222 2 455555555555544333221 12 234555555555544
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=3.2e-25 Score=217.00 Aligned_cols=211 Identities=17% Similarity=0.214 Sum_probs=135.0
Q ss_pred CccccceeecCCcEEEEEeCCCCCccccCccCCCC--CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCccc-CC
Q 048302 53 HCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNL--SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGS-VP 129 (545)
Q Consensus 53 ~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 129 (545)
|..|.++.|+...++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +.++++|++|++++|.+.+. ++
T Consensus 36 c~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 36 CKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp CHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 5679888876556777788776655 2334444 6777777777777665444 44677777777777776644 66
Q ss_pred cccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecC-CCCc-cCCcccCCCCCCCEEEccCC-cCccc-cChhhh
Q 048302 130 SQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGN-GLNG-TFPSRLGDLTQLQDLGLSDN-LLSGS-LPVSLF 205 (545)
Q Consensus 130 ~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~ 205 (545)
..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++ ..+
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 190 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAV 190 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH-HHH
Confidence 66677777777777777766666666677777777777777 4554 24455666677777777777 66543 23 445
Q ss_pred hCCC-CCCEEEccCC--cCc-ccCCccccccCCCCceeccccc-ccccCCcCCCCCCCCCEEEccCCc
Q 048302 206 TNLQ-SLSYLDVSNN--LLS-GNIPPEIGNLKKLSDLYLGINQ-FTGSIPAELGNCRNLKAVVLSLNA 268 (545)
Q Consensus 206 ~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 268 (545)
..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 5666 6777777766 333 2344455566666666666666 444445555566666666666653
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.9e-22 Score=190.82 Aligned_cols=130 Identities=33% Similarity=0.372 Sum_probs=49.1
Q ss_pred CCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEee
Q 048302 89 SLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFS 168 (545)
Q Consensus 89 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 168 (545)
++++|++++|.+.+..+..|.++++|++|++++|.+++..+ . +.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 33444444444333333333444444444444444332111 1 33334444444444333 333333333444444444
Q ss_pred cCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCc
Q 048302 169 GNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLS 222 (545)
Q Consensus 169 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 222 (545)
+|.+++..+..|.++++|++|++++|+++ .++...+..+++|+.|++++|.++
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCC
Confidence 44433333333333444444444444333 222233333333344444333333
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=8.9e-24 Score=206.70 Aligned_cols=232 Identities=19% Similarity=0.218 Sum_probs=172.7
Q ss_pred CCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccC-CCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEE
Q 048302 304 NQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGP-IPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELV 382 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 382 (545)
+.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4677777777777655443 55677788888888877654 666677778888888888877776666777788888888
Q ss_pred cccC-eeeec-cCccccCcc-ccEEEccCC-cceee-cChhhhcCC-CCCeEeccCc--cCc-ccCChhhhccCCCCEEE
Q 048302 383 LVNN-RISGS-IPEYISELP-LKVLDLQYN-NFTGV-IPVSLWNSE-NLMEFNAASN--LLE-GSLSWEIGNAVALEELD 453 (545)
Q Consensus 383 l~~n-~l~~~-~~~~~~~~~-L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~ 453 (545)
+++| .+++. ++..+..++ |++|++++| .+++. ++..+..++ +|+.|++++| .+. +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 8888 56542 444455555 888888888 77754 566788888 9999999999 454 45666778899999999
Q ss_pred ccCCc-CcccccccccccCCCCEEeCCCcc-ccccCCcccccCCCCCEEeCCCCcccccccccccCC-CCCCeeeCCCCc
Q 048302 454 LSSNM-LTGQIPKKIGNLTNIQILKLNSNF-FDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADL-TQLQFLDLSHNN 530 (545)
Q Consensus 454 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~ 530 (545)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +... .+..+ ..++.|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 99998 777777888999999999999995 33332236788999999999999 4432 23333 347777899999
Q ss_pred ccccCCCCcc
Q 048302 531 LSGPIPSKPS 540 (545)
Q Consensus 531 l~~~ip~~~~ 540 (545)
+++..|..+.
T Consensus 305 l~~~~~~~~~ 314 (336)
T 2ast_B 305 FTTIARPTIG 314 (336)
T ss_dssp SCCTTCSSCS
T ss_pred CccccCCccc
Confidence 9999887654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8.5e-23 Score=197.06 Aligned_cols=181 Identities=21% Similarity=0.198 Sum_probs=93.8
Q ss_pred CCCEEECCCCCCCccCCc---ccCCCCCCCEEeCCCCcCcccCCccc--CCCCCCCEEEcccccCCccCC----ccccCC
Q 048302 89 SLRILDLSKNLLFGQLSP---QVSNLKRLKMLSLGENQLSGSVPSQL--GLLTRLETLSLRSNSFTGEMP----SELGDI 159 (545)
Q Consensus 89 ~L~~L~ls~~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p----~~l~~l 159 (545)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ +.+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455666665554321000 11123446666666666666666555 666666666666666664333 233456
Q ss_pred CCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccc--cC-hhhhhCCCCCCEEEccCCcCcccCCc----ccccc
Q 048302 160 KQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGS--LP-VSLFTNLQSLSYLDVSNNLLSGNIPP----EIGNL 232 (545)
Q Consensus 160 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~-~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l 232 (545)
++|++|++++|.+.+..+..++.+++|++|++++|++.+. ++ ...+..+++|++|++++|.++. ++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 6666666666666655555666666666666666665421 11 1122445556666666665542 111 13445
Q ss_pred CCCCceecccccccccCCcCCCCC---CCCCEEEccCCcCc
Q 048302 233 KKLSDLYLGINQFTGSIPAELGNC---RNLKAVVLSLNALS 270 (545)
Q Consensus 233 ~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~~~ 270 (545)
++|++|++++|.+++..|..+..+ ++|++|++++|.++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 555555555555554444444333 34555555444443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.3e-24 Score=210.19 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=93.1
Q ss_pred eecccccccccCCcCCCCCCCCCEEEccCCcCcccCh----hhhcccc--ccEEEccCCCCCCCCccccCCC-----CCC
Q 048302 238 LYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLP----EQLAELQ--IFTFSAGMNQLSGPLPSWLGKW-----NQM 306 (545)
Q Consensus 238 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~--l~~l~l~~~~~~~~~~~~~~~~-----~~L 306 (545)
++++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..+. ++.+++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555667777777777766655 4444443 6777777777766655555443 677
Q ss_pred CEEEccCCcceecCCcC----CCCC-CCCCEEEcccCcCccCCCcccc----C-CCCCcEEECcCCcCcccc----cccc
Q 048302 307 DSLWLYNNQFVGRIPPE----IGNC-SMLKCISLSNNKLSGPIPRELC----D-SGSLVEINLDGNMLSGTI----EDVF 372 (545)
Q Consensus 307 ~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~ls~n~l~~~~~~~~~----~-~~~L~~L~L~~n~i~~~~----~~~~ 372 (545)
++|++++|.+.+..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777766544432 2233 6677777777777655544432 2 246777777777766432 2233
Q ss_pred cCCC-CCCEEEcccCeeeeccC
Q 048302 373 DRCT-NLSELVLVNNRISGSIP 393 (545)
Q Consensus 373 ~~~~-~L~~L~l~~n~l~~~~~ 393 (545)
..++ +|++|++++|++++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCH
T ss_pred hcCCccccEeeecCCCCchhhH
Confidence 3443 66666666666654433
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.5e-22 Score=184.25 Aligned_cols=181 Identities=24% Similarity=0.266 Sum_probs=163.7
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
...++++++++.+. .+|..+. +.+++|++++|.+.+..+..++.+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678999999885 4565554 68999999999999888889999999999999999999888888999999999999
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG 247 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 247 (545)
++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 999999877788999999999999999998 6776778899999999999999997777789999999999999999998
Q ss_pred cCCcCCCCCCCCCEEEccCCcCccc
Q 048302 248 SIPAELGNCRNLKAVVLSLNALSGS 272 (545)
Q Consensus 248 ~~~~~l~~l~~L~~L~l~~n~~~~~ 272 (545)
..+..+..+++|++|++++|.+.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8778899999999999999999876
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.4e-22 Score=185.24 Aligned_cols=179 Identities=23% Similarity=0.283 Sum_probs=151.5
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCc-CcccCCcccCCCCCCCEEEccc-ccCCccCCccccCCCCCCEE
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQ-LSGSVPSQLGLLTRLETLSLRS-NSFTGEMPSELGDIKQLKSL 165 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L 165 (545)
+++++|++++|.+.+..+..|.++++|++|++++|. +.+..+..|..+++|++|++++ |.+.+..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999988777789999999999999997 8766667889999999999998 88987767788999999999
Q ss_pred EeecCCCCccCCcccCCCCCCC---EEEccCC-cCccccChhhhhCCCCCC-EEEccCCcCcccCCccccccCCCCceec
Q 048302 166 DFSGNGLNGTFPSRLGDLTQLQ---DLGLSDN-LLSGSLPVSLFTNLQSLS-YLDVSNNLLSGNIPPEIGNLKKLSDLYL 240 (545)
Q Consensus 166 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l 240 (545)
++++|.+++ +|. +..+++|+ +|++++| .++ .++...+.++++|+ +|++++|.++ .+|......++|++|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 999999985 666 88888888 9999999 887 66667788899999 9999999988 44444333488999999
Q ss_pred cccc-ccccCCcCCCCC-CCCCEEEccCCcCc
Q 048302 241 GINQ-FTGSIPAELGNC-RNLKAVVLSLNALS 270 (545)
Q Consensus 241 ~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~ 270 (545)
++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9995 887777778888 89999999998876
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.3e-24 Score=213.82 Aligned_cols=255 Identities=17% Similarity=0.187 Sum_probs=153.9
Q ss_pred cCCccccccCCCCceeccccccccc----CCcCCCCCCCCCEEEccCCc---CcccChhhhccccccEEEccCCCCCCCC
Q 048302 224 NIPPEIGNLKKLSDLYLGINQFTGS----IPAELGNCRNLKAVVLSLNA---LSGSLPEQLAELQIFTFSAGMNQLSGPL 296 (545)
Q Consensus 224 ~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~---~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 296 (545)
.++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|. +.+.+|..+..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l---------------- 86 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL---------------- 86 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH----------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH----------------
Confidence 4556677778888888888877754 23346677788888887753 334444443322
Q ss_pred ccccCCCCCCCEEEccCCccee----cCCcCCCCCCCCCEEEcccCcCccCCCccccC----C---------CCCcEEEC
Q 048302 297 PSWLGKWNQMDSLWLYNNQFVG----RIPPEIGNCSMLKCISLSNNKLSGPIPRELCD----S---------GSLVEINL 359 (545)
Q Consensus 297 ~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~----~---------~~L~~L~L 359 (545)
...+..+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+..+.. + ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 1223455666666666666654 23334455566666666666654332222222 2 45555555
Q ss_pred cCCcCcc-ccc---ccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccC
Q 048302 360 DGNMLSG-TIE---DVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLL 435 (545)
Q Consensus 360 ~~n~i~~-~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 435 (545)
++|+++. ..+ ..+..+++|++|++++|.++.... ....+..+..+++|+.|++++|.+
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~------------------~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI------------------EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH------------------HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH------------------HHHHHHHhhcCCCccEEECcCCCC
Confidence 5555541 122 233444555555555554431100 002233566777788888888877
Q ss_pred c----ccCChhhhccCCCCEEEccCCcCccc----ccccccc--cCCCCEEeCCCccccc----cCCccc-ccCCCCCEE
Q 048302 436 E----GSLSWEIGNAVALEELDLSSNMLTGQ----IPKKIGN--LTNIQILKLNSNFFDG----IIPMEF-GDCISLNTL 500 (545)
Q Consensus 436 ~----~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L 500 (545)
. +.+|..+..+++|++|+|++|++++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 5 45666777788888888888888765 4555533 7888888888888876 366666 557888888
Q ss_pred eCCCCccccccc
Q 048302 501 DLGNNNLNGSIP 512 (545)
Q Consensus 501 ~L~~n~l~~~~~ 512 (545)
++++|++++..+
T Consensus 309 ~l~~N~l~~~~~ 320 (386)
T 2ca6_A 309 ELNGNRFSEEDD 320 (386)
T ss_dssp ECTTSBSCTTSH
T ss_pred EccCCcCCcchh
Confidence 888888886553
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.3e-22 Score=183.91 Aligned_cols=196 Identities=18% Similarity=0.196 Sum_probs=173.5
Q ss_pred cEEEEEeCCCCCccccCccCCCCCCCCEEECCCCC-CCccCCcccCCCCCCCEEeCCC-CcCcccCCcccCCCCCCCEEE
Q 048302 65 RVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNL-LFGQLSPQVSNLKRLKMLSLGE-NQLSGSVPSQLGLLTRLETLS 142 (545)
Q Consensus 65 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 142 (545)
.++.++++++.+.+..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ |.+.+..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78999999999998777789999999999999997 8776677899999999999998 999977778899999999999
Q ss_pred cccccCCccCCccccCCCCCC---EEEeecC-CCCccCCcccCCCCCCC-EEEccCCcCccccChhhhhCCCCCCEEEcc
Q 048302 143 LRSNSFTGEMPSELGDIKQLK---SLDFSGN-GLNGTFPSRLGDLTQLQ-DLGLSDNLLSGSLPVSLFTNLQSLSYLDVS 217 (545)
Q Consensus 143 L~~n~~~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 217 (545)
+++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+.++++|+ +|++++|.++ .+|...+.. ++|++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 99999985 676 88999998 9999999 99877777899999999 9999999998 788666666 899999999
Q ss_pred CCc-CcccCCcccccc-CCCCceecccccccccCCcCCCCCCCCCEEEccCC
Q 048302 218 NNL-LSGNIPPEIGNL-KKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLN 267 (545)
Q Consensus 218 ~n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 267 (545)
+|. +++..+..+..+ ++|+.|++++|.+++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 995 987767888999 999999999999984 4433 6789999998875
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=194.36 Aligned_cols=206 Identities=18% Similarity=0.180 Sum_probs=141.7
Q ss_pred CCCCEEEccCCcceecCCcCC--CCCCCCCEEEcccCcCccCCC----ccccCCCCCcEEECcCCcCcccccccccCCCC
Q 048302 304 NQMDSLWLYNNQFVGRIPPEI--GNCSMLKCISLSNNKLSGPIP----RELCDSGSLVEINLDGNMLSGTIEDVFDRCTN 377 (545)
Q Consensus 304 ~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~ 377 (545)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457777777777777777666 677777777887777775444 23345667777777777776666666777777
Q ss_pred CCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccC--Ch-hhhccCCCCEEEc
Q 048302 378 LSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSL--SW-EIGNAVALEELDL 454 (545)
Q Consensus 378 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~-~~~~~~~L~~L~L 454 (545)
|++|++++|++.+.... ..+..+..+++|++|++++|.+.... +. .+..+++|++|++
T Consensus 171 L~~L~Ls~N~l~~~~~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGL-------------------MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp CCEEECCSCTTCHHHHH-------------------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred CCEEECCCCCCccchhh-------------------hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 77777777765432100 01122345667777777777775211 11 2466788888888
Q ss_pred cCCcCccccccccccc---CCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcc
Q 048302 455 SSNMLTGQIPKKIGNL---TNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 455 ~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 531 (545)
++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++
T Consensus 232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 8888887767666665 68888888888888 5566653 6888899999988853 33 56778899999999988
Q ss_pred cc
Q 048302 532 SG 533 (545)
Q Consensus 532 ~~ 533 (545)
+.
T Consensus 307 ~~ 308 (310)
T 4glp_A 307 LV 308 (310)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.3e-21 Score=186.45 Aligned_cols=193 Identities=20% Similarity=0.313 Sum_probs=144.0
Q ss_pred CCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCE
Q 048302 301 GKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSE 380 (545)
Q Consensus 301 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 380 (545)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345678888888887763 34 56777888888888888775443 77788888888888887764 24777888888
Q ss_pred EEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcC
Q 048302 381 LVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNML 459 (545)
Q Consensus 381 L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l 459 (545)
|++++|.+++. +. +..++ |+.|++++|++++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++
T Consensus 112 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 88888887753 32 55555 8888888888875433 7778888888888888875433 77788888888888888
Q ss_pred cccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 460 TGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 460 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
++..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 75433 778888888888888887654 37788888888888888874
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.8e-21 Score=174.98 Aligned_cols=185 Identities=27% Similarity=0.316 Sum_probs=153.1
Q ss_pred CccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCccc
Q 048302 53 HCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQL 132 (545)
Q Consensus 53 ~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (545)
.|.|.++.|....++ .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+
T Consensus 6 ~C~~~~v~c~~~~l~-----------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (208)
T 2o6s_A 6 SCSGTTVECYSQGRT-----------SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72 (208)
T ss_dssp EEETTEEECCSSCCS-----------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred EECCCEEEecCCCcc-----------CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc
Confidence 478999998754322 223222 3689999999999987777778999999999999999987666778
Q ss_pred CCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCC
Q 048302 133 GLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLS 212 (545)
Q Consensus 133 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 212 (545)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ 151 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCcc
Confidence 99999999999999999766677899999999999999998777777899999999999999998 56656788899999
Q ss_pred EEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCC
Q 048302 213 YLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRN 258 (545)
Q Consensus 213 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 258 (545)
+|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++.
T Consensus 152 ~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 152 YIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp EEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 99999997663 4568899999999999988888876654
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4e-21 Score=184.81 Aligned_cols=194 Identities=20% Similarity=0.301 Sum_probs=168.4
Q ss_pred CCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-cc
Q 048302 324 IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LK 402 (545)
Q Consensus 324 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~ 402 (545)
...+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..++ |+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 4467899999999999985 34 68889999999999999987765 89999999999999998853 3 455666 99
Q ss_pred EEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCcc
Q 048302 403 VLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNF 482 (545)
Q Consensus 403 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 482 (545)
.|++++|++++. + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 999999999864 3 38899999999999999986544 8899999999999999996433 8999999999999999
Q ss_pred ccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeCCCCcccc
Q 048302 483 FDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 483 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 533 (545)
+++..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 986644 889999999999999999654 38899999999999999985
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.7e-21 Score=197.02 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=174.8
Q ss_pred CCCCCCCCCc-----cccce-eecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEe
Q 048302 45 SGWNKTTRHC-----DWFGV-KCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLS 118 (545)
Q Consensus 45 ~~w~~~~~~c-----~w~~~-~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 118 (545)
.+|.....+| .|.++ .|...+++.++++++.+.+ +|..+ +++|++|++++|.+. .+| ..+++|++|+
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HHHhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 3565555667 69998 7877789999999999987 67655 388999999999997 566 5579999999
Q ss_pred CCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCcc
Q 048302 119 LGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSG 198 (545)
Q Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 198 (545)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~- 173 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT- 173 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-
Confidence 99999986 777 665 99999999999996 666 68999999999999986 665 5789999999999998
Q ss_pred ccChhhhhCCCCCCEEEccCCcCcccCCccccccCCC-------CceecccccccccCCcCCCCCCCCCEEEccCCcCcc
Q 048302 199 SLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKL-------SDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSG 271 (545)
Q Consensus 199 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 271 (545)
.+|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 174 ~lp~--l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 174 FLPE--LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCC--CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred Ccch--hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 4884 44 89999999999998 6666 554 77 99999999999 578878889999999999999999
Q ss_pred cChhhhcccc
Q 048302 272 SLPEQLAELQ 281 (545)
Q Consensus 272 ~~~~~l~~l~ 281 (545)
..|..+..+.
T Consensus 245 ~~p~~l~~l~ 254 (571)
T 3cvr_A 245 RIRESLSQQT 254 (571)
T ss_dssp HHHHHHHHHH
T ss_pred cCHHHHHHhh
Confidence 9998887754
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3e-20 Score=182.24 Aligned_cols=202 Identities=16% Similarity=0.118 Sum_probs=134.6
Q ss_pred ccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCC-ccc
Q 048302 54 CDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVP-SQL 132 (545)
Q Consensus 54 c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (545)
|.|..|.|...+++ .+|..+ .+++++|+|++|.+....+.+|.++++|++|+|++|.+.+.+| .+|
T Consensus 9 C~~~~v~C~~~~Lt-----------~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 9 CSNRVFLCQESKVT-----------EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp EETTEEEEESTTCC-----------SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB
T ss_pred eeCCEEEecCCCCC-----------ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh
Confidence 56666777643332 234433 2578888888888876656678888888888888888755444 467
Q ss_pred CCCCCCCE-EEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccC-CcCccccChhhhhCCC-
Q 048302 133 GLLTRLET-LSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSD-NLLSGSLPVSLFTNLQ- 209 (545)
Q Consensus 133 ~~l~~L~~-L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~- 209 (545)
.+++++++ +.+..|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+. .++...+..+.
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~ 154 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSF 154 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcch
Confidence 77877765 45566777766677788888888888888888765555566666777777765 3454 55555555553
Q ss_pred CCCEEEccCCcCcccCCccccccCCCCceeccc-ccccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 210 SLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGI-NQFTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 210 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
.++.|++++|.++. ++.......+|+++++.+ |.++...+..|..+++|++|++++|+++
T Consensus 155 ~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 155 ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 57777777777763 444444455677777754 4555333345667777777777777665
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.6e-20 Score=166.93 Aligned_cols=174 Identities=23% Similarity=0.273 Sum_probs=92.0
Q ss_pred CEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecC
Q 048302 91 RILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGN 170 (545)
Q Consensus 91 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 170 (545)
+.++.+++.+.. +|..+ .++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 345555555432 23222 345666666666666544445566666666666666666444444556666666666666
Q ss_pred CCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCC
Q 048302 171 GLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIP 250 (545)
Q Consensus 171 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 250 (545)
.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 665444444555666666666666655 3333445555555555555555554433344555555555555554432
Q ss_pred cCCCCCCCCCEEEccCCcCcccChh
Q 048302 251 AELGNCRNLKAVVLSLNALSGSLPE 275 (545)
Q Consensus 251 ~~l~~l~~L~~L~l~~n~~~~~~~~ 275 (545)
.+++|+.|++..|.++|.+|.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBC
T ss_pred ----CCCCHHHHHHHHHhCCceeec
Confidence 233444444444444444443
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.2e-19 Score=166.56 Aligned_cols=167 Identities=28% Similarity=0.302 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCC
Q 048302 43 VLSGWNKTTRHCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGEN 122 (545)
Q Consensus 43 ~~~~w~~~~~~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n 122 (545)
....|+..+..|.|.++.|...+++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c~~~~l~-----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDCRSKRHA-----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp ---CCCCTTCEEETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhccCCCCCEEeCCEeEccCCCcC-----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 4456777788999999999754332 3343332 78899999999988888888888999999999999
Q ss_pred cCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccCh
Q 048302 123 QLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPV 202 (545)
Q Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 202 (545)
.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|+++ .++.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~ 152 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH 152 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCH
Confidence 987665667788889999999999888666667788888888888888888 67777888888888888888887 5665
Q ss_pred hhhhCCCCCCEEEccCCcCccc
Q 048302 203 SLFTNLQSLSYLDVSNNLLSGN 224 (545)
Q Consensus 203 ~~~~~l~~L~~L~l~~n~~~~~ 224 (545)
..+..+++|+.|++++|.+...
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTT
T ss_pred HHHhCCCCCCEEEeeCCCccCC
Confidence 6677888888888888877643
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.8e-19 Score=174.40 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=48.9
Q ss_pred EEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCC-ccccCCCCCCE-EEeec
Q 048302 92 ILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMP-SELGDIKQLKS-LDFSG 169 (545)
Q Consensus 92 ~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~-L~l~~ 169 (545)
.++.+++.++ .+|..+ .+++++|+|++|+++...+.+|+++++|++|+|++|.+.+.+| .+|.+++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444444443 233333 2345555555555553333445555555555555555443333 23445554443 33344
Q ss_pred CCCCccCCcccCCCCCCCEEEccCCcCc
Q 048302 170 NGLNGTFPSRLGDLTQLQDLGLSDNLLS 197 (545)
Q Consensus 170 n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 197 (545)
|.+....|+.|..+++|++|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccc
Confidence 5555444445555555555555555554
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.4e-20 Score=189.75 Aligned_cols=187 Identities=24% Similarity=0.308 Sum_probs=147.8
Q ss_pred CCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcc
Q 048302 305 QMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLV 384 (545)
Q Consensus 305 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 384 (545)
+++.|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999985 67655 378999999999998 566 457899999999999987 444 544 89999999
Q ss_pred cCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccc
Q 048302 385 NNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQI 463 (545)
Q Consensus 385 ~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 463 (545)
+|.+++ +|. .++ |+.|++++|.+++ +|. .+++|+.|++++|.+.+ +|. +. ++|++|++++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999886 555 234 9999999999886 454 57889999999998886 555 44 88999999999888 66
Q ss_pred cccccccCCC-------CEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCC
Q 048302 464 PKKIGNLTNI-------QILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT 519 (545)
Q Consensus 464 ~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 519 (545)
|. +.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 65 544 66 89999999888 4677777788999999999999888887776543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.3e-18 Score=158.42 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=71.1
Q ss_pred CCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEc
Q 048302 137 RLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDV 216 (545)
Q Consensus 137 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 216 (545)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..|+.|.++++|++|++++|.++ .+|...|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence 4444444444444333344445555555555555554444445555555555555555554 444344455555555555
Q ss_pred cCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 048302 217 SNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALS 270 (545)
Q Consensus 217 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 270 (545)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555544555555556666666666655555555556666666666666554
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=158.60 Aligned_cols=152 Identities=24% Similarity=0.233 Sum_probs=90.8
Q ss_pred cEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccC-ccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccC
Q 048302 355 VEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIP-EYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAAS 432 (545)
Q Consensus 355 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 432 (545)
+++++++|.++..+. .+ .+.+++|++++|.+++..+ ..+..++ |+.|++++|++++..+..|..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777765432 22 2345677777777665543 2344444 66666666666655555566666666666666
Q ss_pred ccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 433 NLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 433 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
|.+.+..+..+..+++|++|++++|++++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|++.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66655555555566666666666666665555556666666666666666665555566666666666666666553
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.5e-18 Score=158.12 Aligned_cols=134 Identities=24% Similarity=0.288 Sum_probs=110.5
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 67888999988888777778888888889999888888777888888888888888888888655556788888888888
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLS 222 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 222 (545)
++|.+.+..|..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888777788888888888888888887 455466777888888888888765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=170.72 Aligned_cols=174 Identities=29% Similarity=0.285 Sum_probs=136.4
Q ss_pred EEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccC-CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccccc
Q 048302 69 LVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVS-NLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNS 147 (545)
Q Consensus 69 l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 147 (545)
++.+++.+.. +|..+. ..++.|+|++|.+.+..+..+. ++++|++|++++|.+.+..+..|..+++|++|+|++|.
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4455555543 444332 4588999999998877777777 89999999999999987777888999999999999999
Q ss_pred CCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhh---hCCCCCCEEEccCCcCccc
Q 048302 148 FTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLF---TNLQSLSYLDVSNNLLSGN 224 (545)
Q Consensus 148 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~ 224 (545)
+....+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|...+ ..+++|+.|++++|.+++.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 98777777889999999999999998877888899999999999999988 6775655 5678888888888888855
Q ss_pred CCccccccCC--CCceeccccccc
Q 048302 225 IPPEIGNLKK--LSDLYLGINQFT 246 (545)
Q Consensus 225 ~~~~l~~l~~--L~~L~l~~n~l~ 246 (545)
.+..+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5556666665 367777777665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=4e-18 Score=155.22 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=74.2
Q ss_pred CCEEEcccccCCccCC-ccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEc
Q 048302 138 LETLSLRSNSFTGEMP-SELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDV 216 (545)
Q Consensus 138 L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 216 (545)
+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEEC
Confidence 3455555555443322 23445555555555555555444445555555555555555555 333344555555666666
Q ss_pred cCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCccc
Q 048302 217 SNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGS 272 (545)
Q Consensus 217 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 272 (545)
++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 66665555555556666666666666666655566666666666666666666543
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=165.24 Aligned_cols=172 Identities=27% Similarity=0.403 Sum_probs=116.7
Q ss_pred CCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCE
Q 048302 85 YNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKS 164 (545)
Q Consensus 85 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 164 (545)
.++++|+.|++++|.+.+. +.+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+ +| .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3456677777777766543 236667777777777777764333 6777777777777777764 23 3777777777
Q ss_pred EEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceeccccc
Q 048302 165 LDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQ 244 (545)
Q Consensus 165 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 244 (545)
|++++|.+.+. ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 77777777642 456677777777777777763 3 346677777777777777765433 6777777777777777
Q ss_pred ccccCCcCCCCCCCCCEEEccCCcCcc
Q 048302 245 FTGSIPAELGNCRNLKAVVLSLNALSG 271 (545)
Q Consensus 245 l~~~~~~~l~~l~~L~~L~l~~n~~~~ 271 (545)
+++ ++ .+..+++|+.|++++|++..
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 764 33 36777777777777777653
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2e-18 Score=164.45 Aligned_cols=172 Identities=20% Similarity=0.288 Sum_probs=137.9
Q ss_pred CCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCcc-cc
Q 048302 324 IGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LK 402 (545)
Q Consensus 324 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~ 402 (545)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..++ |+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence 34678899999999998754 3 47788999999999999987665 8889999999999999875 332 55555 88
Q ss_pred EEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCcc
Q 048302 403 VLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNF 482 (545)
Q Consensus 403 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 482 (545)
.|++++|++.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|++++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 899988888754 4577888888888888888765 467888888888888888886544 7888888888888888
Q ss_pred ccccCCcccccCCCCCEEeCCCCcccc
Q 048302 483 FDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 483 l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
+++. ..+..+++|+.|++++|++..
T Consensus 190 i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC--hhhccCCCCCEEECcCCcccC
Confidence 8764 347888888888888888874
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=8.6e-18 Score=154.09 Aligned_cols=154 Identities=27% Similarity=0.304 Sum_probs=84.9
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCC
Q 048302 115 KMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDN 194 (545)
Q Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 194 (545)
+.++++++.+. .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34444444443 3333322 44555555555555444555555555555555555554333344455555555555555
Q ss_pred cCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccC
Q 048302 195 LLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSL 273 (545)
Q Consensus 195 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 273 (545)
+++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 555 344344555566666666666655 45555566666666666666666555555666677777777777666443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.2e-18 Score=178.52 Aligned_cols=149 Identities=28% Similarity=0.388 Sum_probs=76.2
Q ss_pred CCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCE
Q 048302 109 SNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQD 188 (545)
Q Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 188 (545)
..+++|++|++++|.+. .++ .+..+++|++|+|++|.+.+..| +..+++|+.|+|++|.+.+ + ..+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 34455555555555554 222 34555555555555555553322 5555555555555555542 2 24555555555
Q ss_pred EEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCc
Q 048302 189 LGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNA 268 (545)
Q Consensus 189 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 268 (545)
|++++|.+.+ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.
T Consensus 114 L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 5555555542 22 244555555555555555532 345555555555555555554333 5555555555555555
Q ss_pred Cc
Q 048302 269 LS 270 (545)
Q Consensus 269 ~~ 270 (545)
+.
T Consensus 187 i~ 188 (605)
T 1m9s_A 187 IS 188 (605)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.6e-18 Score=167.35 Aligned_cols=175 Identities=24% Similarity=0.240 Sum_probs=118.5
Q ss_pred CEEEcccCcCccCCCccccCCCCCcEEECcCCcCccccccccc-CCCCCCEEEcccCeeeeccCccccCcc-ccEEEccC
Q 048302 331 KCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFD-RCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQY 408 (545)
Q Consensus 331 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~ 408 (545)
+.++++++.++. +|..+. +.++.|++++|.+++..+..|. .+++|+.|++++|.+++..+..+..++ |++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888773 555443 4578888888888877777776 788888888888888766666666665 77777777
Q ss_pred CcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccc---cccCCCCEEeCCCccccc
Q 048302 409 NNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKI---GNLTNIQILKLNSNFFDG 485 (545)
Q Consensus 409 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~ 485 (545)
|++.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|++++..+..| ..+++|+.|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666666677777777777777766666666667777777777777664333333 456667777777776665
Q ss_pred cCCcccccCCC--CCEEeCCCCccc
Q 048302 486 IIPMEFGDCIS--LNTLDLGNNNLN 508 (545)
Q Consensus 486 ~~~~~l~~l~~--L~~L~L~~n~l~ 508 (545)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455555554 366666666655
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.5e-18 Score=176.24 Aligned_cols=172 Identities=23% Similarity=0.274 Sum_probs=114.1
Q ss_pred cCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCC
Q 048302 300 LGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLS 379 (545)
Q Consensus 300 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 379 (545)
+..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+.. .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCC
Confidence 3456788888888888763 33 47788888888888888876544 777888888888888887642 577788888
Q ss_pred EEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 380 ELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 380 ~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
.|++++|.+.+. + .+..++ |+.|++++|++.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI-N-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC-G-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC-c-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888877642 2 233444 66666666666643 445566666666666666655444 5556666666666666
Q ss_pred CcccccccccccCCCCEEeCCCccccc
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDG 485 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 485 (545)
+++. ..+..+++|+.|+|++|++.+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6542 245556666666666666554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.6e-18 Score=152.12 Aligned_cols=152 Identities=15% Similarity=0.253 Sum_probs=79.4
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEE
Q 048302 110 NLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDL 189 (545)
Q Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 189 (545)
.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444555555555554 333 3455555555555555443 12345555555555555555554455555555555555
Q ss_pred EccCCcCccccChhhhhCCCCCCEEEccCCc-CcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCc
Q 048302 190 GLSDNLLSGSLPVSLFTNLQSLSYLDVSNNL-LSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNA 268 (545)
Q Consensus 190 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 268 (545)
++++|.+++..+ ..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 555555553333 445555566666666655 33 233 45555666666666666553 22 45556666666666665
Q ss_pred Cc
Q 048302 269 LS 270 (545)
Q Consensus 269 ~~ 270 (545)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=9.8e-18 Score=150.02 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=133.6
Q ss_pred CCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCE
Q 048302 85 YNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKS 164 (545)
Q Consensus 85 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 164 (545)
.++++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56789999999999987 455 6899999999999999775 3457899999999999999999878889999999999
Q ss_pred EEeecCCCCccCCcccCCCCCCCEEEccCCc-CccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccc
Q 048302 165 LDFSGNGLNGTFPSRLGDLTQLQDLGLSDNL-LSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGIN 243 (545)
Q Consensus 165 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 243 (545)
|++++|.+++..|..++.+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 9999999998788889999999999999998 65 565 47899999999999999985 33 7889999999999999
Q ss_pred cccc
Q 048302 244 QFTG 247 (545)
Q Consensus 244 ~l~~ 247 (545)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8763
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=3.9e-19 Score=190.22 Aligned_cols=231 Identities=20% Similarity=0.242 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHcCCCC--CCCCCCCCC-CCCccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECC----
Q 048302 24 PKQERRSLVHFKNSLQNP--QVLSGWNKT-TRHCDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLS---- 96 (545)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~--~~~~~w~~~-~~~c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls---- 96 (545)
...+++++.++....... ..-..|... ...+.|.+..+...+++++++.++.+... +..+.....|+.+.+.
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~ 208 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDD 208 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcc-hhhHhhcCccCcccccCccc
Confidence 345678888887665322 223455333 34678988888888999999988877652 3333223333333322
Q ss_pred -CCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCcc
Q 048302 97 -KNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGT 175 (545)
Q Consensus 97 -~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ 175 (545)
.|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 23322 45677889999999999999998 77878889999999999999999 88999999999999999999998 7
Q ss_pred CCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCC-CCceecccccccccCCcCCC
Q 048302 176 FPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKK-LSDLYLGINQFTGSIPAELG 254 (545)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~ 254 (545)
+|..++.+++|++|++++|.++ .+| ..+..+++|++|++++|.+++.+|..+..+.. ...+++++|.+++.+|..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLP-WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCC-SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccC-hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 7999999999999999999997 788 44899999999999999999888877765432 234788899988877764
Q ss_pred CCCCCCEEEccCC
Q 048302 255 NCRNLKAVVLSLN 267 (545)
Q Consensus 255 ~l~~L~~L~l~~n 267 (545)
|+.|+++.|
T Consensus 361 ----l~~l~l~~n 369 (727)
T 4b8c_D 361 ----RRFIEINTD 369 (727)
T ss_dssp -------------
T ss_pred ----cceeEeecc
Confidence 445556555
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.3e-18 Score=158.36 Aligned_cols=168 Identities=21% Similarity=0.267 Sum_probs=102.5
Q ss_pred CCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEe
Q 048302 88 SSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDF 167 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 167 (545)
.++..++++++.+.+.. .+..+++|++|++++|.+. .++ .++.+++|++|++++|.+.+. +. +.++++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 34445555555554332 3555666666666666665 334 466666666666666666633 22 666666666666
Q ss_pred ecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccc
Q 048302 168 SGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTG 247 (545)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 247 (545)
++|.+++ +|. +.. ++|++|++++|++++ ++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 6666663 332 222 667777777776663 33 256667777777777776643 256666777777777777765
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcc
Q 048302 248 SIPAELGNCRNLKAVVLSLNALSG 271 (545)
Q Consensus 248 ~~~~~l~~l~~L~~L~l~~n~~~~ 271 (545)
. ..+..+++|+.|++++|.+.+
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 4 456667777777777776653
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=3.7e-17 Score=158.83 Aligned_cols=221 Identities=13% Similarity=0.074 Sum_probs=152.4
Q ss_pred CCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCc----CcccccccccCCCCC
Q 048302 303 WNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNM----LSGTIEDVFDRCTNL 378 (545)
Q Consensus 303 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~----i~~~~~~~~~~~~~L 378 (545)
+++|+.+++.+ .+......+|.+|++|+.+++++|.+....+..|.++.++..+....+. ........|.+|.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777777 6665666677888888888888888776777777777777776665532 122233456667777
Q ss_pred C-EEEcccCeee-eccCc-cccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEcc
Q 048302 379 S-ELVLVNNRIS-GSIPE-YISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLS 455 (545)
Q Consensus 379 ~-~L~l~~n~l~-~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 455 (545)
+ .+.+...... ..... .+....+..+.+.++-...........+++|+.+++++|.+....+..|.++++|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 6 4444432211 00000 0111115555555442211111222348899999999998887777789999999999999
Q ss_pred CCcCcccccccccccCCCC-EEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCCeeeC
Q 048302 456 SNMLTGQIPKKIGNLTNIQ-ILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQFLDL 526 (545)
Q Consensus 456 ~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 526 (545)
+| ++..-..+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|++....+.+|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 87 7756667899999999 999988 777777889999999999999999998777778999999998863
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.2e-19 Score=185.04 Aligned_cols=194 Identities=19% Similarity=0.129 Sum_probs=106.4
Q ss_pred CCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCc-------------CcccccccccCCCCCCEEE-cccCeeeec
Q 048302 326 NCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNM-------------LSGTIEDVFDRCTNLSELV-LVNNRISGS 391 (545)
Q Consensus 326 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~~~~L~~L~-l~~n~l~~~ 391 (545)
.++.|+.|++++|.++ .+|..++.+++|++|++++|. ..+..+..+..+++|+.|+ ++.|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3455555566665554 445555555556666554443 3344455556666666666 444432210
Q ss_pred cC--------ccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccc
Q 048302 392 IP--------EYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQI 463 (545)
Q Consensus 392 ~~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 463 (545)
.. ..+....++.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+..+++|++|+|++|++++ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 00 00001125566666666664 343 566666666666666666 555566666666666666666664 4
Q ss_pred cccccccCCCCEEeCCCccccccC-CcccccCCCCCEEeCCCCcccccccc---cccCCCCCCeee
Q 048302 464 PKKIGNLTNIQILKLNSNFFDGII-PMEFGDCISLNTLDLGNNNLNGSIPE---KIADLTQLQFLD 525 (545)
Q Consensus 464 ~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~ 525 (545)
| .+..+++|++|+|++|.+++.. |..+..+++|+.|++++|++++..|. .+..+++|+.|+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 5666666666666666666554 66666666666666666666644332 123356666654
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.1e-16 Score=142.32 Aligned_cols=132 Identities=21% Similarity=0.236 Sum_probs=93.5
Q ss_pred CEEEcccCeeeeccCccccCccccEEEccCCcceeecCh-hhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCC
Q 048302 379 SELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPV-SLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSN 457 (545)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 457 (545)
+.+++++|.++ .+|..+.. .+++|++++|++.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 67777877775 45543322 477777777777765553 3677777777777777777776777777777777777777
Q ss_pred cCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccccccc
Q 048302 458 MLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIP 512 (545)
Q Consensus 458 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 512 (545)
++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7776666667777777777777777777777777777777777777777765443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.7e-16 Score=148.68 Aligned_cols=165 Identities=25% Similarity=0.296 Sum_probs=135.7
Q ss_pred EEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccccc
Q 048302 68 SLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNS 147 (545)
Q Consensus 68 ~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 147 (545)
.+++.++.+.+.. .+.++++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ ++.+++|++|++++|.
T Consensus 23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 3344455554322 46778999999999999864 44 68899999999999999985444 8999999999999999
Q ss_pred CCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCc
Q 048302 148 FTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPP 227 (545)
Q Consensus 148 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 227 (545)
+.+ +|. +.. ++|++|++++|.+++. +.+..+++|++|++++|++++ ++ .+..+++|++|++++|.+++. .
T Consensus 97 l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 97 LKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC--T
T ss_pred cCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch--H
Confidence 985 444 333 9999999999999853 469999999999999999984 54 478899999999999999865 6
Q ss_pred cccccCCCCceeccccccccc
Q 048302 228 EIGNLKKLSDLYLGINQFTGS 248 (545)
Q Consensus 228 ~l~~l~~L~~L~l~~n~l~~~ 248 (545)
.+..+++|+.|++++|.+.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 788999999999999999854
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.6e-16 Score=138.13 Aligned_cols=135 Identities=22% Similarity=0.165 Sum_probs=91.4
Q ss_pred ccEEEccCCcce-eecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCC
Q 048302 401 LKVLDLQYNNFT-GVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLN 479 (545)
Q Consensus 401 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 479 (545)
++.|++++|++. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 455555555554 34455556666666677766666654 456667777777777777776566666667777777777
Q ss_pred CccccccC-CcccccCCCCCEEeCCCCccccccc---ccccCCCCCCeeeCCCCcccccCCCC
Q 048302 480 SNFFDGII-PMEFGDCISLNTLDLGNNNLNGSIP---EKIADLTQLQFLDLSHNNLSGPIPSK 538 (545)
Q Consensus 480 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~ip~~ 538 (545)
+|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|++. ++|..
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 77776542 2567777788888888888775443 36777888888888888776 56654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.5e-16 Score=136.02 Aligned_cols=108 Identities=26% Similarity=0.297 Sum_probs=49.7
Q ss_pred CCCCEEECCCCCCC-ccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEE
Q 048302 88 SSLRILDLSKNLLF-GQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLD 166 (545)
Q Consensus 88 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 166 (545)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 34444444445555555555544432 3444444455555555544433444444444444444
Q ss_pred eecCCCCccC-CcccCCCCCCCEEEccCCcCc
Q 048302 167 FSGNGLNGTF-PSRLGDLTQLQDLGLSDNLLS 197 (545)
Q Consensus 167 l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~ 197 (545)
+++|.+++.. +..+..+++|++|++++|.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 4444444321 133444444444444444444
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=8.7e-16 Score=136.52 Aligned_cols=131 Identities=23% Similarity=0.245 Sum_probs=94.3
Q ss_pred EEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCc-ccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccc
Q 048302 68 SLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSP-QVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSN 146 (545)
Q Consensus 68 ~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 146 (545)
.++++++.+. .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|+.+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444455553 3454443 2778888888887665553 4777888888888888887777777888888888888888
Q ss_pred cCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccC
Q 048302 147 SFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLP 201 (545)
Q Consensus 147 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 201 (545)
.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8877767777778888888888888877777777777777777777777765544
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=8.3e-17 Score=156.34 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=58.6
Q ss_pred CCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCc-EEECcCCcCcccccccccCCCCCCEE
Q 048302 303 WNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLV-EINLDGNMLSGTIEDVFDRCTNLSEL 381 (545)
Q Consensus 303 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L 381 (545)
+++|+.+++.+|.+.......|.++++|+.+++.+| ++.+.+..|.++++|+ .+.+.+ .++.+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455666666666555444455666666666666655 5545555566666666 666655 5555555566666666666
Q ss_pred EcccCeeeeccCccccCcc-ccEEE
Q 048302 382 VLVNNRISGSIPEYISELP-LKVLD 405 (545)
Q Consensus 382 ~l~~n~l~~~~~~~~~~~~-L~~L~ 405 (545)
++++|.+....+..|...+ |+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666555555555554 55543
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=6.5e-17 Score=173.03 Aligned_cols=179 Identities=25% Similarity=0.255 Sum_probs=94.2
Q ss_pred cCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCcccc
Q 048302 151 EMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIG 230 (545)
Q Consensus 151 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 230 (545)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.++ .+| ..+.++++|++|++++|.++ .+|..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 44556666667777777777666 45555556677777777777776 666 44566777777777777776 5667777
Q ss_pred ccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccc--ccEEEccCCCCCCCCccccCCCCCCCE
Q 048302 231 NLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQ--IFTFSAGMNQLSGPLPSWLGKWNQMDS 308 (545)
Q Consensus 231 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~--l~~l~l~~~~~~~~~~~~~~~~~~L~~ 308 (545)
.+++|++|+|++|.++ .+|..|..+++|++|++++|.+.+.+|..+.... ...+++++|.+.+.+|.. |+.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cce
Confidence 7777777777777776 5666677777777777777777777777665543 233556677777766653 444
Q ss_pred EEccCC--------cceecCCcCCCCCCCCCEEEcccCcC
Q 048302 309 LWLYNN--------QFVGRIPPEIGNCSMLKCISLSNNKL 340 (545)
Q Consensus 309 L~l~~n--------~~~~~~~~~~~~~~~L~~L~ls~n~l 340 (545)
|+++.| .+.+..+..+..+..+....++.|-+
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp --------------------------------------CC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 555554 22222222333444444555555544
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=3.6e-18 Score=177.10 Aligned_cols=183 Identities=20% Similarity=0.258 Sum_probs=148.7
Q ss_pred cCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCe-------------eeeccCccccCcc-ccEEE-ccCCccee
Q 048302 349 CDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNR-------------ISGSIPEYISELP-LKVLD-LQYNNFTG 413 (545)
Q Consensus 349 ~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~-L~~L~-l~~n~l~~ 413 (545)
...+.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..++ |+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45789999999999997 567778999999999997765 3444555555555 77777 55554331
Q ss_pred ecCh-----hhh--cCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCcccccc
Q 048302 414 VIPV-----SLW--NSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGI 486 (545)
Q Consensus 414 ~~~~-----~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 486 (545)
.... .+. ....|+.|++++|.+.+ +|. +..+++|+.|++++|+++ .+|..++.+++|++|+|++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 1100 011 12369999999999986 565 999999999999999999 889999999999999999999997
Q ss_pred CCcccccCCCCCEEeCCCCcccccc-cccccCCCCCCeeeCCCCcccccCCC
Q 048302 487 IPMEFGDCISLNTLDLGNNNLNGSI-PEKIADLTQLQFLDLSHNNLSGPIPS 537 (545)
Q Consensus 487 ~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~ip~ 537 (545)
+| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++.+|.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 56 8999999999999999999776 99999999999999999999976653
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.2e-16 Score=133.30 Aligned_cols=127 Identities=26% Similarity=0.335 Sum_probs=72.7
Q ss_pred CCCCEEECCCCCCC-ccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEE
Q 048302 88 SSLRILDLSKNLLF-GQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLD 166 (545)
Q Consensus 88 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 166 (545)
+++++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45555566666666666666666543 4556666666666666666654555555566666666
Q ss_pred eecCCCCcc-CCcccCCCCCCCEEEccCCcCccccCh---hhhhCCCCCCEEEcc
Q 048302 167 FSGNGLNGT-FPSRLGDLTQLQDLGLSDNLLSGSLPV---SLFTNLQSLSYLDVS 217 (545)
Q Consensus 167 l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~ 217 (545)
+++|.+++. .+..++.+++|++|++++|.++ .++. ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 666666542 2244555555666666555555 2332 244555555555543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6.5e-16 Score=131.41 Aligned_cols=126 Identities=21% Similarity=0.173 Sum_probs=91.5
Q ss_pred ccEEEccCCcce-eecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCC
Q 048302 401 LKVLDLQYNNFT-GVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLN 479 (545)
Q Consensus 401 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 479 (545)
++.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 666666666665 45566666777777777777777655 566777788888888888876677777778888888888
Q ss_pred Ccccccc-CCcccccCCCCCEEeCCCCccccccc---ccccCCCCCCeeeCCC
Q 048302 480 SNFFDGI-IPMEFGDCISLNTLDLGNNNLNGSIP---EKIADLTQLQFLDLSH 528 (545)
Q Consensus 480 ~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~ 528 (545)
+|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8887763 34667778888888888888875544 4677788888887763
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.3e-15 Score=131.07 Aligned_cols=133 Identities=26% Similarity=0.295 Sum_probs=84.3
Q ss_pred ccccceeecCCcEEEEEeCCCCCccccCccCCCCCCCCEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccC
Q 048302 54 CDWFGVKCRHSRVVSLVIQTQSLKGPVSPFLYNLSSLRILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLG 133 (545)
Q Consensus 54 c~w~~~~c~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (545)
|.|.++.|...++ . .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..++
T Consensus 7 C~~~~l~~~~~~l----------~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 7 CSGTEIRCNSKGL----------T-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp EETTEEECCSSCC----------S-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred eCCCEEEecCCCC----------c-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc
Confidence 6777777754322 2 122222 25677777777777665555667777777777777777655555566
Q ss_pred CCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccc
Q 048302 134 LLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGS 199 (545)
Q Consensus 134 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 199 (545)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777777777777777655555566667777777777766654444456666666666666666543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.2e-15 Score=132.78 Aligned_cols=127 Identities=25% Similarity=0.305 Sum_probs=82.3
Q ss_pred CEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 379 SELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
+.+++++|.++ .+|..+. ..+++|++++|+++ .+|..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 46677777766 3443322 13677777777766 455666666777777777777666666666666777777777777
Q ss_pred CcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccc
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555566666677777777777766555555666667777777766664
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.3e-15 Score=132.06 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=58.3
Q ss_pred CEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCc
Q 048302 379 SELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM 458 (545)
Q Consensus 379 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 458 (545)
+.++++++.++. +|..+. ..++.|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 10 ~~l~~~~~~l~~-~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSS-CCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCcc-CCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555442 222111 125555555555544433344444455555555554443333334444445555555554
Q ss_pred CcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 459 LTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 459 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 443333334444445555555444443333334444444444444444443
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=7.5e-14 Score=139.02 Aligned_cols=329 Identities=12% Similarity=0.109 Sum_probs=153.6
Q ss_pred cccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCC
Q 048302 106 PQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQ 185 (545)
Q Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 185 (545)
.+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +...-..+|.++.+|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 34555555555555432 33334445555555555555433 33233344555555555444432 22222333444332
Q ss_pred CCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEcc
Q 048302 186 LQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLS 265 (545)
Q Consensus 186 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 265 (545)
++........ .+....|.++++|+.+.+.++.. .....+|.++.+|+.+.+..+ ++......+.++..|+.+.+.
T Consensus 142 ~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 142 KEITIPEGVT---VIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp SEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccCcccc---ccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 2222211111 22334455556666666544322 133344555555665555443 222333445555555554443
Q ss_pred CCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCC
Q 048302 266 LNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIP 345 (545)
Q Consensus 266 ~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 345 (545)
.+... +.........|+.+.+.... .......+..+..++.+.+..+... ...
T Consensus 217 ~~~~~-------------------------i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 217 NSLYY-------------------------LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp TTCCE-------------------------ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred CCceE-------------------------eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eec
Confidence 32211 00111122344444443221 1122233444555555555443222 233
Q ss_pred ccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCC
Q 048302 346 RELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENL 425 (545)
Q Consensus 346 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 425 (545)
..+..+..++.+......+ ....|..+.+|+.+.+.++ +...-..+|.+|.+|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~------------------------i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS------------------------VKFIGEEAFESCTSL 322 (394)
T ss_dssp CTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT------------------------CCEECTTTTTTCTTC
T ss_pred cccccccccceeccCceee---ccccccccccccccccccc------------------------cceechhhhcCCCCC
Confidence 3344444444444433321 1223444444444444332 222334456667777
Q ss_pred CeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEE
Q 048302 426 MEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTL 500 (545)
Q Consensus 426 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 500 (545)
+.+++.++ +...-..+|.++.+|+.+++..+ ++..-..+|.+|++|+.+++..+ +. .+..+|.+|++|+.+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77777543 44344456777777888777665 55444567888888888888654 22 234567777777654
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=7e-15 Score=130.57 Aligned_cols=127 Identities=27% Similarity=0.335 Sum_probs=89.7
Q ss_pred CEEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecC
Q 048302 91 RILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGN 170 (545)
Q Consensus 91 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 170 (545)
+.++++++.+. .+|..+. ++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777764 3444432 57777777777776 56677777777777777777777666667777777777777777
Q ss_pred CCCccCCcccCCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCc
Q 048302 171 GLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLS 222 (545)
Q Consensus 171 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 222 (545)
.+++..+..|..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777776 555456666777777777777664
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=6.1e-14 Score=139.65 Aligned_cols=334 Identities=13% Similarity=0.125 Sum_probs=179.7
Q ss_pred CcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccChh
Q 048302 124 LSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPVS 203 (545)
Q Consensus 124 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 203 (545)
++.+...+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++......|.++.+|+.+.+..+ +. .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 44445566777777777777643 55444566777777777777654 44344455666667766655443 22 33334
Q ss_pred hhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcccccc
Q 048302 204 LFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIF 283 (545)
Q Consensus 204 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~ 283 (545)
.|.++..++....... ......+|.++++|+.+.+..+. .......|.++.+|+.+++.
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~------------------ 193 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLP------------------ 193 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCC------------------
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcC------------------
Confidence 4444432222221111 11222344455555555554332 11233344444444444443
Q ss_pred EEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCc
Q 048302 284 TFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNM 363 (545)
Q Consensus 284 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 363 (545)
.+ +.......+.++..|+.+.+..+... +.........|+.+.+...
T Consensus 194 -----------------------------~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~- 240 (394)
T 4fs7_A 194 -----------------------------RN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS- 240 (394)
T ss_dssp -----------------------------TT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-
T ss_pred -----------------------------CC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-
Confidence 22 11122233444444444444433221 1112222344555555432
Q ss_pred CcccccccccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChh
Q 048302 364 LSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWE 442 (545)
Q Consensus 364 i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 442 (545)
+.......|..+..++.+.+..+... .....+.... ++.+...... .....+..+.+|+.+.+.++ +......+
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---eccccccccccccccccccc-cceechhh
Confidence 22233345556666666666554332 2223333333 4444444432 22345777888888888765 44344567
Q ss_pred hhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCCCCC
Q 048302 443 IGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLTQLQ 522 (545)
Q Consensus 443 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 522 (545)
|.++.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ +......+|.+|++|+.+++..+ +. .+..++.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 888888998888654 55444567888889999888776 66666778888889998888654 33 3345677777776
Q ss_pred ee
Q 048302 523 FL 524 (545)
Q Consensus 523 ~L 524 (545)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1.4e-13 Score=136.32 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=26.8
Q ss_pred CCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCee
Q 048302 323 EIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRI 388 (545)
Q Consensus 323 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l 388 (545)
.|.+|++|+.+++.+ .++......|.++.+|+.+.+..+ ++.+...+|.+| +|+.+++.+|..
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 344444444444442 233333334444444444444322 333333444444 444444444433
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=4.8e-14 Score=139.75 Aligned_cols=264 Identities=13% Similarity=0.134 Sum_probs=193.2
Q ss_pred CCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q 048302 233 KKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLY 312 (545)
Q Consensus 233 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (545)
..++.+.+.. .++.....+|.++ +|+.+.+..+ +..... .++.+ .+|+.+.+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~-----------------------~aF~~-~~L~~i~lp 165 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD-----------------------MAFFN-STVQEIVFP 165 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECT-----------------------TTTTT-CCCCEEECC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECH-----------------------HhcCC-CCceEEEeC
Confidence 5566666544 3443445566664 6888887655 332211 22333 257778877
Q ss_pred CCcceecCCcCCCCCCCCCEEEcccCcCccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeecc
Q 048302 313 NNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSI 392 (545)
Q Consensus 313 ~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 392 (545)
+ .+.......|.+|++|+.+++.+|.++......|. ..+|+.+.+..+ +..+...+|.+|++|+.+++..+ ++...
T Consensus 166 ~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~ 241 (401)
T 4fdw_A 166 S-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG 241 (401)
T ss_dssp T-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC
T ss_pred C-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc
Confidence 5 45555666788889999999998888866555665 588999999854 77777788999999999999875 45455
Q ss_pred CccccCccccEEEccCCcceeecChhhhcCCCCCeEeccCccCc-----ccCChhhhccCCCCEEEccCCcCcccccccc
Q 048302 393 PEYISELPLKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLE-----GSLSWEIGNAVALEELDLSSNMLTGQIPKKI 467 (545)
Q Consensus 393 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 467 (545)
...|....|+.+.+ .+.++.....+|.+|++|+.+.+.++.+. ...+..|.++++|+.+++.+ .++..-..+|
T Consensus 242 ~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 242 QEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp TTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred ccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 66666655888888 45566666788999999999999887664 34456788999999999984 5765556789
Q ss_pred cccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCCC-CCCeeeCCCCcc
Q 048302 468 GNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT-QLQFLDLSHNNL 531 (545)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l 531 (545)
.+|++|+.+.|.++ ++...+..|.+| +|+.+++.+|.+....+..+.+++ .++.+++..+.+
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 99999999999655 666777889999 999999999988766666777774 788888877653
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.1e-14 Score=127.57 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=63.5
Q ss_pred CCCCCCCCEEECCCCCCCccCCcccCCC-CCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCC
Q 048302 84 LYNLSSLRILDLSKNLLFGQLSPQVSNL-KRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQL 162 (545)
Q Consensus 84 l~~l~~L~~L~ls~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 162 (545)
+.++.+|++|++++|.+.. ++. +..+ ++|++|++++|.+.+. ..++.+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445555666666665543 232 2222 2555555555555533 345555555555555555553322333555555
Q ss_pred CEEEeecCCCCccCCc--ccCCCCCCCEEEccCCcCccccChh---hhhCCCCCCEEEccCCc
Q 048302 163 KSLDFSGNGLNGTFPS--RLGDLTQLQDLGLSDNLLSGSLPVS---LFTNLQSLSYLDVSNNL 220 (545)
Q Consensus 163 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~ 220 (545)
++|++++|.+. .+|. .+..+++|++|++++|.++ .+|.. .+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555555553 2332 4445555555555555554 33321 24444444444444443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.4e-14 Score=126.74 Aligned_cols=133 Identities=21% Similarity=0.242 Sum_probs=74.7
Q ss_pred ccCCCCCCCEEeCCCCcCcccCCcccCCC-CCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCC
Q 048302 107 QVSNLKRLKMLSLGENQLSGSVPSQLGLL-TRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQ 185 (545)
Q Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 185 (545)
.+.++.+|++|++++|.+. .+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3455666777777777666 3343 3333 3666666666666643 45666666666666666666443333456666
Q ss_pred CCEEEccCCcCccccCh-hhhhCCCCCCEEEccCCcCcccCCcc----ccccCCCCceecccccc
Q 048302 186 LQDLGLSDNLLSGSLPV-SLFTNLQSLSYLDVSNNLLSGNIPPE----IGNLKKLSDLYLGINQF 245 (545)
Q Consensus 186 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l 245 (545)
|++|++++|.++ .+|. ..+..+++|+.|++++|.+. ..|.. +..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666664 4442 24555566666666666555 23332 45555555555555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4.1e-16 Score=139.51 Aligned_cols=126 Identities=28% Similarity=0.263 Sum_probs=85.8
Q ss_pred ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCC
Q 048302 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNS 480 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 480 (545)
|++|++++|++.+ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|++|++++
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence 4444444444443 34 5666777777777777776 456566667778888888888774 44 577778888888888
Q ss_pred ccccccCC-cccccCCCCCEEeCCCCcccccccc----------cccCCCCCCeeeCCCCcccc
Q 048302 481 NFFDGIIP-MEFGDCISLNTLDLGNNNLNGSIPE----------KIADLTQLQFLDLSHNNLSG 533 (545)
Q Consensus 481 n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~l~~n~l~~ 533 (545)
|.+.+..+ ..+..+++|++|++++|++.+.+|. .+..+++|+.|| +|+++.
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88775432 4677788888888888887765554 267788888776 666653
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1e-16 Score=143.39 Aligned_cols=131 Identities=24% Similarity=0.285 Sum_probs=73.1
Q ss_pred CCCCEEECCCCCCCccCCc------ccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCC
Q 048302 88 SSLRILDLSKNLLFGQLSP------QVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQ 161 (545)
Q Consensus 88 ~~L~~L~ls~~~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~ 161 (545)
..++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3344444444444444333 56666666666666666653 44 5566666666666666665 45555555566
Q ss_pred CCEEEeecCCCCccCCcccCCCCCCCEEEccCCcCccccCh-hhhhCCCCCCEEEccCCcCccc
Q 048302 162 LKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDNLLSGSLPV-SLFTNLQSLSYLDVSNNLLSGN 224 (545)
Q Consensus 162 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~ 224 (545)
|++|++++|.+++ +| .+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666666666653 23 3555566666666666665 2221 3455556666666666655543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.5e-13 Score=117.88 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=73.3
Q ss_pred ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCC
Q 048302 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNS 480 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 480 (545)
.+.+++++|.++. +|..+ .++++.|++++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5677777777763 44433 26677777777777766666677777777777777777755555566777777777777
Q ss_pred ccccccCCcccccCCCCCEEeCCCCccccc
Q 048302 481 NFFDGIIPMEFGDCISLNTLDLGNNNLNGS 510 (545)
Q Consensus 481 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 510 (545)
|++++..+..|..+++|++|+|++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777766555677777777777777776643
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.4e-12 Score=113.20 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=48.0
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEc
Q 048302 112 KRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGL 191 (545)
Q Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 191 (545)
++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45555555555555555555555555555555555555444444555555555555555555444444555555555555
Q ss_pred cCCcCc
Q 048302 192 SDNLLS 197 (545)
Q Consensus 192 ~~n~~~ 197 (545)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=6.6e-11 Score=117.67 Aligned_cols=323 Identities=12% Similarity=0.151 Sum_probs=159.6
Q ss_pred CcccCCcccCCCC-CCCEEEcccccCCccCCccccCCCCCCEEEeecCC---CCccCCcccCCCCCCCEEEccCCcCccc
Q 048302 124 LSGSVPSQLGLLT-RLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNG---LNGTFPSRLGDLTQLQDLGLSDNLLSGS 199 (545)
Q Consensus 124 l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 199 (545)
++.+-..+|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ ++ .
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence 3334456677764 5888888654 554556678888888888887653 44344455666777776665544 22 4
Q ss_pred cChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCCEEEccCCcCcccChhhhcc
Q 048302 200 LPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLKAVVLSLNALSGSLPEQLAE 279 (545)
Q Consensus 200 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 279 (545)
++...|..+.+|+.+.+..+. .......+..+.+|+.+.+..+ ++.....+|. ...|+.+.+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~------------- 191 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPA------------- 191 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECT-------------
T ss_pred ehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECC-------------
Confidence 444556666666666664332 2233344455555555555432 2212222222 22344443322
Q ss_pred ccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcCccCCC-------------c
Q 048302 280 LQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKLSGPIP-------------R 346 (545)
Q Consensus 280 l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-------------~ 346 (545)
+... .....+..+..++.............. .
T Consensus 192 ----------------------------------~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 192 ----------------------------------KVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI 236 (394)
T ss_dssp ----------------------------------TCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE
T ss_pred ----------------------------------cccc-cccchhhhccccceecccccccccccceeeccccccccccc
Confidence 1111 122233334444443333222211000 0
Q ss_pred cccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhhcCCCCC
Q 048302 347 ELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLWNSENLM 426 (545)
Q Consensus 347 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 426 (545)
.+.....+..+.+.. .+......+|.+|.+|+.+.+.++... ....+|.++++|+
T Consensus 237 ~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~------------------------I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 237 RYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS------------------------IGTGAFMNCPALQ 291 (394)
T ss_dssp ECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE------------------------ECTTTTTTCTTCC
T ss_pred ccccccccceEEcCC-cceEcccceeeecccccEEecccccce------------------------ecCcccccccccc
Confidence 011122233333322 222333445666666666665543221 2234455666666
Q ss_pred eEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCc
Q 048302 427 EFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNN 506 (545)
Q Consensus 427 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 506 (545)
.+.+.. .+.......|.++.+|+.++|.++ ++..-..+|.+|.+|+.+.|..+ ++.....+|.+|++|+.+++.++.
T Consensus 292 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 292 DIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 666643 233333445666777777777643 44333456777777777777544 554555677777777777777765
Q ss_pred ccccccccccCCCCCCeeeCCCCcc
Q 048302 507 LNGSIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 507 l~~~~~~~l~~l~~L~~L~l~~n~l 531 (545)
... ..+..+..|+.+.+..+.+
T Consensus 369 ~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 369 SQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HHH---HTCBCCCCC----------
T ss_pred eeh---hhhhccCCCCEEEeCCCCE
Confidence 431 3455667777776665543
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=6.2e-11 Score=117.87 Aligned_cols=331 Identities=11% Similarity=0.134 Sum_probs=184.8
Q ss_pred CcccCCCC-CCCEEeCCCCcCcccCCcccCCCCCCCEEEccccc---CCccCCccccCCCCCCEEEeecCCCCccCCccc
Q 048302 105 SPQVSNLK-RLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNS---FTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRL 180 (545)
Q Consensus 105 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 180 (545)
..+|.+++ .|+.+.+..+ ++.+-..+|.++.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++......+
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34566664 4777777654 554666777888888888877653 44344566777788887776654 333445567
Q ss_pred CCCCCCCEEEccCCcCccccChhhhhCCCCCCEEEccCCcCcccCCccccccCCCCceecccccccccCCcCCCCCCCCC
Q 048302 181 GDLTQLQDLGLSDNLLSGSLPVSLFTNLQSLSYLDVSNNLLSGNIPPEIGNLKKLSDLYLGINQFTGSIPAELGNCRNLK 260 (545)
Q Consensus 181 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 260 (545)
..+.+|+.+.+..+. . .+....|..+.+|+.+.+..+ ++.....+|. ..+|+.+.+..+-.. .....+..+.+++
T Consensus 134 ~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhccccccccccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence 778888888886543 2 455567778888888887654 3323333443 356777777654332 4455677777777
Q ss_pred EEEccCCcCcccChhhhccccccEEEccCCCCCCCCccccCCCCCCCEEEccCCcceecCCcCCCCCCCCCEEEcccCcC
Q 048302 261 AVVLSLNALSGSLPEQLAELQIFTFSAGMNQLSGPLPSWLGKWNQMDSLWLYNNQFVGRIPPEIGNCSMLKCISLSNNKL 340 (545)
Q Consensus 261 ~L~l~~n~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l 340 (545)
................+........ ..........+..+.+... +.......|.++..|+.+.+..+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDY----------ALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCE----------EEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC
T ss_pred eecccccccccccceeecccccccc----------cccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc
Confidence 7766554432110000000000000 0000111223344444322 2223445567777777777765433
Q ss_pred ccCCCccccCCCCCcEEECcCCcCcccccccccCCCCCCEEEcccCeeeeccCccccCccccEEEccCCcceeecChhhh
Q 048302 341 SGPIPRELCDSGSLVEINLDGNMLSGTIEDVFDRCTNLSELVLVNNRISGSIPEYISELPLKVLDLQYNNFTGVIPVSLW 420 (545)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 420 (545)
. .....|..++.|+.+.+. +.++.....+|.+|.+|+.+++..+ + +..-..+|.
T Consensus 278 ~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v-----------------------~~I~~~aF~ 331 (394)
T 4gt6_A 278 S-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I-----------------------TQILDDAFA 331 (394)
T ss_dssp E-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C-----------------------CEECTTTTT
T ss_pred e-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-c-----------------------cEehHhHhh
Confidence 2 444556666777777774 3445555566777777777766543 2 223345677
Q ss_pred cCCCCCeEeccCccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCccc
Q 048302 421 NSENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFF 483 (545)
Q Consensus 421 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 483 (545)
+|.+|+.+.+..+ +...-..+|.++++|+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777777777654 443445567788888888888765431 3566777888887766544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.2e-12 Score=112.22 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=52.8
Q ss_pred EEECCCCCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCC
Q 048302 92 ILDLSKNLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNG 171 (545)
Q Consensus 92 ~L~ls~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 171 (545)
.++++++.+. .+|..+. ++|++|++++|.+.+..|..|+.+++|++|+|++|.+.+..+..|.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4444444442 3333332 455555555555554445555555555555555555554333344555555555555555
Q ss_pred CCccCCcccCCCCCCCEEEccCCcCc
Q 048302 172 LNGTFPSRLGDLTQLQDLGLSDNLLS 197 (545)
Q Consensus 172 l~~~~~~~l~~l~~L~~L~l~~n~~~ 197 (545)
+.+..+..+..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55433334555555555555555554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2e-12 Score=112.47 Aligned_cols=104 Identities=32% Similarity=0.423 Sum_probs=84.2
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCCEEEccCC
Q 048302 115 KMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQDLGLSDN 194 (545)
Q Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 194 (545)
+.++++++.+. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68888888886 6776654 78888899888888777888888888888888888888665556788888888888888
Q ss_pred cCccccChhhhhCCCCCCEEEccCCcCc
Q 048302 195 LLSGSLPVSLFTNLQSLSYLDVSNNLLS 222 (545)
Q Consensus 195 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 222 (545)
+++ .+|...+..+++|++|++++|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 887 566566778888888888888776
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=5.4e-14 Score=138.07 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=75.3
Q ss_pred ccEEEccCCcceeecChhh-----hcCCCCCeEeccCccCccc----CChhhhccCCCCEEEccCCcCccc----ccccc
Q 048302 401 LKVLDLQYNNFTGVIPVSL-----WNSENLMEFNAASNLLEGS----LSWEIGNAVALEELDLSSNMLTGQ----IPKKI 467 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~ 467 (545)
++.|++++|.++......+ ...++|+.|++++|.+.+. ++..+...++|++|+|++|++++. ++..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 5555555555543322222 2356677777777776542 233345667777778877777643 24456
Q ss_pred cccCCCCEEeCCCcccccc----CCcccccCCCCCEEeCCCCcccccccccccCCC---C--CCeee--CCCCccc
Q 048302 468 GNLTNIQILKLNSNFFDGI----IPMEFGDCISLNTLDLGNNNLNGSIPEKIADLT---Q--LQFLD--LSHNNLS 532 (545)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~--L~~L~--l~~n~l~ 532 (545)
..+++|++|+|++|.+++. ++..+..+++|++|+|++|.++......+..+. . |+.+. +.++.+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 6677788888888877643 333455567788888888877755444443321 1 55555 5555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.9e-13 Score=134.13 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=101.1
Q ss_pred ccEEEccCCcceeecChh-hhcCCCCCeEeccCccCcccCChhh-----hccCCCCEEEccCCcCccc----cccccccc
Q 048302 401 LKVLDLQYNNFTGVIPVS-LWNSENLMEFNAASNLLEGSLSWEI-----GNAVALEELDLSSNMLTGQ----IPKKIGNL 470 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l 470 (545)
|+.|++++|.++...... ...+++|+.|++++|.+.+.....+ ...+.|++|+|++|.+++. ++..+..+
T Consensus 103 L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 182 (372)
T 3un9_A 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182 (372)
T ss_dssp EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence 666666666655332222 2345689999999999976554444 2468899999999999753 44556789
Q ss_pred CCCCEEeCCCcccccc----CCcccccCCCCCEEeCCCCccccc----ccccccCCCCCCeeeCCCCccccc
Q 048302 471 TNIQILKLNSNFFDGI----IPMEFGDCISLNTLDLGNNNLNGS----IPEKIADLTQLQFLDLSHNNLSGP 534 (545)
Q Consensus 471 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 534 (545)
++|++|+|++|.+++. ++..+..+++|++|+|++|.++.. +...+...++|++|++++|+++..
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 9999999999999764 356677889999999999999853 344556779999999999998754
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=4e-11 Score=117.15 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCCCCCCCEEECCC-CCCCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCC
Q 048302 84 LYNLSSLRILDLSK-NLLFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFT 149 (545)
Q Consensus 84 l~~l~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 149 (545)
+..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 44555555555553 5554444444555555555555555554444444444444444444444444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=7.8e-11 Score=115.07 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=74.1
Q ss_pred EEEccCC-cceeecChhhhcCCCCCeEeccC-ccCcccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCC
Q 048302 403 VLDLQYN-NFTGVIPVSLWNSENLMEFNAAS-NLLEGSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNS 480 (545)
Q Consensus 403 ~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 480 (545)
.++.+++ +++ .+|. +..+++|+.|++++ |.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 3566 77777777777775 777766666777777777777777777776677777777777777777
Q ss_pred ccccccCCcccccCCCCCEEeCCCCcccc
Q 048302 481 NFFDGIIPMEFGDCISLNTLDLGNNNLNG 509 (545)
Q Consensus 481 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 509 (545)
|++++..+..|..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777765555555554 7777777777663
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=1.4e-08 Score=100.26 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=42.4
Q ss_pred cCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccCCCCCCC
Q 048302 108 VSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLGDLTQLQ 187 (545)
Q Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 187 (545)
+....+|+.+.+.. .++.+-..+|.+|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ +.......|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 44556677777764 344455566777777777777543 443444555555 4555555433 22122222332 2455
Q ss_pred EEEccC
Q 048302 188 DLGLSD 193 (545)
Q Consensus 188 ~L~l~~ 193 (545)
.+.+..
T Consensus 117 ~i~lp~ 122 (379)
T 4h09_A 117 DFEFPG 122 (379)
T ss_dssp EEECCT
T ss_pred cccCCC
Confidence 555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=2.5e-08 Score=98.42 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=73.4
Q ss_pred cccCCCCCCEEEcccCeeeeccCccccCcc-ccEEEccCCcceeecChhhhcCCCCCeEeccCccCcccCChhhhccCCC
Q 048302 371 VFDRCTNLSELVLVNNRISGSIPEYISELP-LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNLLEGSLSWEIGNAVAL 449 (545)
Q Consensus 371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 449 (545)
.+..+.+++.+.+..+ +.......+.... |+.+.+..+ ++..-..++.++.+++.+.+..+ +.......+.++++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444555555555433 1112222333332 555555433 33333445566666666666543 322333455666667
Q ss_pred CEEEccCCcCcccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCcccccccccccCC
Q 048302 450 EELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLNGSIPEKIADL 518 (545)
Q Consensus 450 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 518 (545)
+.+++.++.++..-..+|.+|.+|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++.....+|.++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 77666666665444456666677777776543 44444556666777776666543 443333444444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=2.7e-10 Score=110.70 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=76.7
Q ss_pred CCCCCCCEEEcccccCCccCCccccCCCCCCEEEeecCCCCccCCcccC--CCCCCCEEEccC--CcCccc-----cChh
Q 048302 133 GLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSGNGLNGTFPSRLG--DLTQLQDLGLSD--NLLSGS-----LPVS 203 (545)
Q Consensus 133 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~~~~~-----~~~~ 203 (545)
..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .+++|++|+++. +...+. +. .
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-P 244 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-G
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-H
Confidence 44455555555554211 1222 22 55566666655554432222222 455666665532 111000 00 1
Q ss_pred hh--hCCCCCCEEEccCCcCcccCCcccc---ccCCCCceeccccccccc----CCcCCCCCCCCCEEEccCCcCcccCh
Q 048302 204 LF--TNLQSLSYLDVSNNLLSGNIPPEIG---NLKKLSDLYLGINQFTGS----IPAELGNCRNLKAVVLSLNALSGSLP 274 (545)
Q Consensus 204 ~~--~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~ 274 (545)
.+ ..+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+.+. ++..+..+++|+.|+++.|.+++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 2356777777777766543322332 356777777777777653 23334456778888888887765555
Q ss_pred hhhccccccEEEccCC
Q 048302 275 EQLAELQIFTFSAGMN 290 (545)
Q Consensus 275 ~~l~~l~l~~l~l~~~ 290 (545)
..+...-...++++.+
T Consensus 325 ~~l~~alg~~~~~~~~ 340 (362)
T 2ra8_A 325 KELQKSLPMKIDVSDS 340 (362)
T ss_dssp HHHHHHCCSEEECCSB
T ss_pred HHHHHHcCCEEEecCC
Confidence 5454421233444443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=7.2e-10 Score=107.69 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=76.7
Q ss_pred ccEEEccCCcceeecChhhh--cCCCCCeEeccC--ccCccc-----CChhh--hccCCCCEEEccCCcCccccccccc-
Q 048302 401 LKVLDLQYNNFTGVIPVSLW--NSENLMEFNAAS--NLLEGS-----LSWEI--GNAVALEELDLSSNMLTGQIPKKIG- 468 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~- 468 (545)
|+.|++..|.+.......+. .+++|+.|+++. +...+. +...+ ..+++|++|++++|.+.+..+..+.
T Consensus 195 L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~ 274 (362)
T 2ra8_A 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274 (362)
T ss_dssp CSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred CcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh
Confidence 56666655555433222232 567777777642 111111 11112 2468888888888888754433332
Q ss_pred --ccCCCCEEeCCCcccccc----CCcccccCCCCCEEeCCCCcccccccccccC-CCCCCeeeCCCCc
Q 048302 469 --NLTNIQILKLNSNFFDGI----IPMEFGDCISLNTLDLGNNNLNGSIPEKIAD-LTQLQFLDLSHNN 530 (545)
Q Consensus 469 --~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 530 (545)
.+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ..++++++++
T Consensus 275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 477888888888888764 3334456788888999888877544444443 2 4567887776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=6.6e-09 Score=91.08 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=74.2
Q ss_pred hhhhcCCCCCeEeccCc-cCccc----CChhhhccCCCCEEEccCCcCccc----ccccccccCCCCEEeCCCcccccc-
Q 048302 417 VSLWNSENLMEFNAASN-LLEGS----LSWEIGNAVALEELDLSSNMLTGQ----IPKKIGNLTNIQILKLNSNFFDGI- 486 (545)
Q Consensus 417 ~~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~- 486 (545)
..+...+.|++|++++| .+.+. +...+...++|++|+|++|++.+. +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555667777777776 66432 223345566777777777777643 234455567777777777777643
Q ss_pred ---CCcccccCCCCCEEeC--CCCccccc----ccccccCCCCCCeeeCCCCccc
Q 048302 487 ---IPMEFGDCISLNTLDL--GNNNLNGS----IPEKIADLTQLQFLDLSHNNLS 532 (545)
Q Consensus 487 ---~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 532 (545)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666677888888 67777643 2344555677888888877764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=8.8e-09 Score=90.25 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=54.4
Q ss_pred hcCCCCCeEeccCccCccc----CChhhhccCCCCEEEccCCcCccc----ccccccccCCCCEEeC--CCcccccc---
Q 048302 420 WNSENLMEFNAASNLLEGS----LSWEIGNAVALEELDLSSNMLTGQ----IPKKIGNLTNIQILKL--NSNFFDGI--- 486 (545)
Q Consensus 420 ~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~n~l~~~--- 486 (545)
...+.|++|++++|.+.+. +...+...++|++|+|++|.|++. +...+...++|++|+| ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555554332 223344556777777777777653 3455666777788888 67777643
Q ss_pred -CCcccccCCCCCEEeCCCCccc
Q 048302 487 -IPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 487 -~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
+...+...++|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3344566678888888888765
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=2.1e-08 Score=92.20 Aligned_cols=80 Identities=26% Similarity=0.289 Sum_probs=60.3
Q ss_pred hccCCCCEEEccCCcCcc--cccccccccCCCCEEeCCCccccccCCcccccCC--CCCEEeCCCCccccccc-------
Q 048302 444 GNAVALEELDLSSNMLTG--QIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCI--SLNTLDLGNNNLNGSIP------- 512 (545)
Q Consensus 444 ~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~------- 512 (545)
.+++.|++|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567888888888888886 4456667888888888888888765 3333444 88999999999887655
Q ss_pred ccccCCCCCCeee
Q 048302 513 EKIADLTQLQFLD 525 (545)
Q Consensus 513 ~~l~~l~~L~~L~ 525 (545)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2467788998876
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=8e-08 Score=81.86 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=48.2
Q ss_pred CCCCeEeccCccCcccCChhhhccCCCCEEEccCCc-Cccccccccccc----CCCCEEeCCCcc-ccccCCcccccCCC
Q 048302 423 ENLMEFNAASNLLEGSLSWEIGNAVALEELDLSSNM-LTGQIPKKIGNL----TNIQILKLNSNF-FDGIIPMEFGDCIS 496 (545)
Q Consensus 423 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 496 (545)
..|+.||++++.+++.-...+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666655544555666666666666663 554433334432 356666666663 55443344555666
Q ss_pred CCEEeCCCCc
Q 048302 497 LNTLDLGNNN 506 (545)
Q Consensus 497 L~~L~L~~n~ 506 (545)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=4.3e-07 Score=83.50 Aligned_cols=81 Identities=23% Similarity=0.218 Sum_probs=64.0
Q ss_pred hhcCCCCCeEeccCccCcc--cCChhhhccCCCCEEEccCCcCcccccccccccC--CCCEEeCCCccccccCCc-----
Q 048302 419 LWNSENLMEFNAASNLLEG--SLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLT--NIQILKLNSNFFDGIIPM----- 489 (545)
Q Consensus 419 ~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~----- 489 (545)
..++++|+.|++++|.+.+ .++..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+..|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3567899999999999987 4566778899999999999999864 3344444 899999999999876552
Q ss_pred --ccccCCCCCEEe
Q 048302 490 --EFGDCISLNTLD 501 (545)
Q Consensus 490 --~l~~l~~L~~L~ 501 (545)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 367788998886
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.2e-07 Score=79.19 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=37.0
Q ss_pred ccEEEccCCcceeecChhhhcCCCCCeEeccCcc-CcccCChhhhcc----CCCCEEEccCCc-CcccccccccccCCCC
Q 048302 401 LKVLDLQYNNFTGVIPVSLWNSENLMEFNAASNL-LEGSLSWEIGNA----VALEELDLSSNM-LTGQIPKKIGNLTNIQ 474 (545)
Q Consensus 401 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 474 (545)
|+.|++++|.++..--..+..+++|+.|++++|. +++..-..+..+ ++|++|+|++|. +++.--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 5555555555443333334445555555555543 333322233322 245555555552 4443333444455555
Q ss_pred EEeCCCcc
Q 048302 475 ILKLNSNF 482 (545)
Q Consensus 475 ~L~Ls~n~ 482 (545)
+|+|++|+
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 55555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.82 E-value=1.5e-05 Score=69.25 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=62.3
Q ss_pred hcCCCCCeEeccCc-cCccc----CChhhhccCCCCEEEccCCcCccc----ccccccccCCCCEEeCCCcccccc----
Q 048302 420 WNSENLMEFNAASN-LLEGS----LSWEIGNAVALEELDLSSNMLTGQ----IPKKIGNLTNIQILKLNSNFFDGI---- 486 (545)
Q Consensus 420 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~---- 486 (545)
.+-+.|+.|++++| .+.+. +.+.+..-+.|+.|+|++|++.+. +.+.+...+.|++|+|++|.+++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666653 44322 233444456677777777776643 233444566777777777776543
Q ss_pred CCcccccCCCCCEEeCCCC---cccc----cccccccCCCCCCeeeCCCCcc
Q 048302 487 IPMEFGDCISLNTLDLGNN---NLNG----SIPEKIADLTQLQFLDLSHNNL 531 (545)
Q Consensus 487 ~~~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~l 531 (545)
+.+.+..-+.|++|+|++| .+.. .+...+..-++|+.|+++.|..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2234555566777777654 2332 1334455556777777766553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=7.1e-05 Score=64.92 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=59.6
Q ss_pred hhhcCCCCCeEeccCccCccc----CChhhhccCCCCEEEccCCcCccc----ccccccccCCCCEEeCCCc---cccc-
Q 048302 418 SLWNSENLMEFNAASNLLEGS----LSWEIGNAVALEELDLSSNMLTGQ----IPKKIGNLTNIQILKLNSN---FFDG- 485 (545)
Q Consensus 418 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n---~l~~- 485 (545)
++.....|+.|++++|.+.+. +.+.+..-+.|++|+|++|+|++. +.+++...+.|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 344455666666666666543 233455567888888888888754 3445666778888888765 3332
Q ss_pred ---cCCcccccCCCCCEEeCCCCccc
Q 048302 486 ---IIPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 486 ---~~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
.+...+..-+.|+.|+++.|.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23455667788888888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0028 Score=51.15 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=45.2
Q ss_pred CEEEccCCcCc-ccccccccccCCCCEEeCCCccccccCCcccccCCCCCEEeCCCCccc
Q 048302 450 EELDLSSNMLT-GQIPKKIGNLTNIQILKLNSNFFDGIIPMEFGDCISLNTLDLGNNNLN 508 (545)
Q Consensus 450 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 508 (545)
..++.++++++ ..+|..+. ++|++|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 35665432 47899999999998777778888999999999999765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0055 Score=49.39 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=45.4
Q ss_pred CeEeccCccCc-ccCChhhhccCCCCEEEccCCcCcccccccccccCCCCEEeCCCcccc
Q 048302 426 MEFNAASNLLE-GSLSWEIGNAVALEELDLSSNMLTGQIPKKIGNLTNIQILKLNSNFFD 484 (545)
Q Consensus 426 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 484 (545)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888876 35554432 47999999999999766778899999999999999874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.78 E-value=42 Score=24.86 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=18.5
Q ss_pred CCcccCCCCCCCEEEcccccCCccCCccccCCCCCCEEEeec
Q 048302 128 VPSQLGLLTRLETLSLRSNSFTGEMPSELGDIKQLKSLDFSG 169 (545)
Q Consensus 128 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 169 (545)
-..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344445555555554432 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.91 E-value=54 Score=24.23 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCccCCcccCCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEcccc
Q 048302 100 LFGQLSPQVSNLKRLKMLSLGENQLSGSVPSQLGLLTRLETLSLRSN 146 (545)
Q Consensus 100 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 146 (545)
++..-..+|.++..|+.+.+..+ ++.+-..+|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34444567788888888888765 34456678888888888888654
Done!