BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048307
         (271 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q8W|A Chain A, Crystal Structure Of Pap-S1aci, A Pokeweed Antiviral
           Protein From Seeds Of Phytolacca Acinosa
          Length = 261

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 4   DEENPLIGKINPRIARMMTW---YNSLGHRASIYG---VAAGYCLSASLLAIINKWATMK 57
           D EN L    NPR+A+ + +   Y +L ++A +     V  G  + +S +  I+   +  
Sbjct: 99  DVENTLCPSTNPRVAKPINYNGLYPTLENKAGVTSRNQVQLGIQILSSDIGKISGQGSF- 157

Query: 58  FAYPEALTALRYLTSAVGVLPCGSCFKFIDHDLLTFVTMRRFASAAII 105
                  T  ++L  A+ ++P  + FK+I++ + T      F +  ++
Sbjct: 158 ----TEKTEAKFLLVAIQMVPEAARFKYIENQVKTNFNRDFFPNDKVL 201


>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
           Bacterial Effector Protein Avrpto
          Length = 321

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 137 LLTILGGSLLYIMGEMSKLKHEITNKSDWYSFEVILPLGFSCFFGGFTVL--GGAVNKSL 194
           L  ++ G+L YI  E   +K  +T KSD YSF V+L          F VL    A+ +SL
Sbjct: 197 LXXVVKGTLGYIDPEYF-IKGRLTEKSDVYSFGVVL----------FEVLCARSAIVQSL 245

Query: 195 -NVVINLAFWDKHSTRVGTLGLLI 217
              ++NLA W   S   G L  ++
Sbjct: 246 PREMVNLAEWAVESHNNGQLEQIV 269


>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
          Length = 327

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 137 LLTILGGSLLYIMGEMSKLKHEITNKSDWYSFEVILPLGFSCFFGGFTVL--GGAVNKSL 194
           L  ++ G+L YI  E   +K  +T KSD YSF V+L          F VL    A+ +SL
Sbjct: 197 LXXVVKGTLGYIDPEYF-IKGRLTEKSDVYSFGVVL----------FEVLCARSAIVQSL 245

Query: 195 -NVVINLAFWDKHSTRVGTLGLLI 217
              ++NLA W   S   G L  ++
Sbjct: 246 PREMVNLAEWAVESHNNGQLEQIV 269


>pdb|3LGJ|A Chain A, Crystal Structure Of Single-Stranded Binding Protein (Ssb)
           From Bartonella Henselae
 pdb|3LGJ|B Chain B, Crystal Structure Of Single-Stranded Binding Protein (Ssb)
           From Bartonella Henselae
          Length = 169

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 143 GSLLYIMGEMSKLKHEITNKSDWYSFEVILP 173
           GS +YI G++   K +  N  D Y+ E++LP
Sbjct: 93  GSKVYIEGKLQTRKWQDKNGHDRYTTEIVLP 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,285,377
Number of Sequences: 62578
Number of extensions: 266254
Number of successful extensions: 545
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 7
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)