Query 048307
Match_columns 271
No_of_seqs 121 out of 345
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 90.9 0.18 6E-06 41.1 3.7 41 189-229 65-105 (137)
2 3b5d_A Multidrug transporter E 70.8 6.8 0.00023 30.0 5.2 40 190-229 66-105 (110)
3 3b5d_A Multidrug transporter E 43.2 22 0.00075 27.0 3.7 27 119-146 74-100 (110)
4 2i68_A Protein EMRE; transmemb 21.9 46 0.0016 26.6 2.3 26 121-147 76-101 (137)
5 1psm_A SPAM-H1; polymorphic an 9.0 1.1E+02 0.0038 19.2 0.9 29 234-263 9-37 (38)
6 2k21_A Potassium voltage-gated 7.9 46 0.0016 26.9 -1.5 43 215-257 62-108 (138)
7 1vpu_A VPU protein, VPU(39-81) 7.2 85 0.0029 20.7 -0.2 20 249-268 14-33 (45)
8 2jp3_A FXYD domain-containing 6.9 5.5E+02 0.019 18.1 3.9 38 16-53 4-41 (67)
9 3l1l_A Arginine/agmatine antip 6.6 2.7E+02 0.0091 24.9 2.8 26 212-237 411-436 (445)
10 3iyz_A Aquaporin-4; water tran 6.1 1.1E+02 0.0036 28.4 -0.3 20 209-228 248-268 (340)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=90.92 E-value=0.18 Score=41.13 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHHHhhhhheeecc
Q 048307 189 AVNKSLNVVINLAFWDKHSTRVGTLGLLICMLGGVTYQQSP 229 (271)
Q Consensus 189 ~lnk~~~~v~~v~~fd~~~S~~~~~gi~i~l~gg~lYs~ak 229 (271)
.+.-+.++++++++++++.|+..++|+.+.+.|.++.+..+
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34467888999999999999999999999999999887544
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=70.78 E-value=6.8 Score=29.99 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHHHhhhhheeecc
Q 048307 190 VNKSLNVVINLAFWDKHSTRVGTLGLLICMLGGVTYQQSP 229 (271)
Q Consensus 190 lnk~~~~v~~v~~fd~~~S~~~~~gi~i~l~gg~lYs~ak 229 (271)
..-+.++++++++|+|+.|+..++|+.+.+.|.++.+...
T Consensus 66 ~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3467788999999999999999999999999988876543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=43.16 E-value=22 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.3
Q ss_pred heeeeecccCCchHHHHHHHHHHHHHHH
Q 048307 119 AVSPFLHQPWPLIKTWFSLLTILGGSLL 146 (271)
Q Consensus 119 ~~~~~lg~~~ps~~v~ls~~liv~Ga~~ 146 (271)
..++++||+ ++...++.+.+|+.|.+.
T Consensus 74 ~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~ 100 (110)
T 3b5d_A 74 LSWGFFGQR-LDLPAIIGMMLICAGVLI 100 (110)
T ss_pred HHHHHhCCC-CCHHHHHHHHHHHHHHHH
Confidence 445678897 699999999999999864
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=21.87 E-value=46 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=16.6
Q ss_pred eeeecccCCchHHHHHHHHHHHHHHHH
Q 048307 121 SPFLHQPWPLIKTWFSLLTILGGSLLY 147 (271)
Q Consensus 121 ~~~lg~~~ps~~v~ls~~liv~Ga~~y 147 (271)
++++|++ ++...++.+++|++|.+..
T Consensus 76 ~l~lgE~-ls~~~~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 76 WGFFGQR-LDLPAIIGMMLICAGVLII 101 (137)
T ss_dssp HHHHC-------CHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CCHHHHHHHHHHHHHHHHH
Confidence 3477887 6999999999999998765
No 5
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=9.03 E-value=1.1e+02 Score=19.23 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=17.3
Q ss_pred CCCCccchhhcchhhhhhccccccccchhh
Q 048307 234 RAVNETEVQETWSDKARAGGQAARGMQEKT 263 (271)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (271)
+...++...+.++..+++--||+++- |||
T Consensus 9 asqdAe~aAkdAe~a~~~AEqAsKdA-ekL 37 (38)
T 1psm_A 9 ASQDAEQAAKDAENASKEAEEAAKEA-VNL 37 (38)
T ss_dssp SSHHHHSTTTTTTHHHHHTTTTTCTT-SCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 33334445555667777778888753 444
No 6
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=7.91 E-value=46 Score=26.88 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=21.0
Q ss_pred HHHHHhhhhheeec--ccCCCCCCC-cc-chhhcchhhhhhcccccc
Q 048307 215 LLICMLGGVTYQQS--PTNKPRAVN-ET-EVQETWSDKARAGGQAAR 257 (271)
Q Consensus 215 i~i~l~gg~lYs~a--k~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 257 (271)
..=++.+|++.+|. |++..+... .. -.+..|.+++|++.|+.-
T Consensus 62 ffgff~~GImLsYiRSKk~E~s~DPy~~YIe~d~W~ek~K~y~q~~~ 108 (138)
T 2k21_A 62 FFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQARV 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCTTTTTSCTTTCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhccccCCcHHHHHHHHHHHHhhHHHHHHHh
Confidence 33344556665544 433222211 11 123447778888887643
No 7
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=7.19 E-value=85 Score=20.70 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=14.0
Q ss_pred hhhccccccccchhhhhhcc
Q 048307 249 ARAGGQAARGMQEKTHATRE 268 (271)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (271)
+++.+--|++|+|.|++.-|
T Consensus 14 aEDSGNESeGD~EELs~Lve 33 (45)
T 1vpu_A 14 AEDSGNESEGDQEELSALVE 33 (45)
T ss_dssp TCHHHHTTTTHHHHTCSSCC
T ss_pred hhcCCCCCcccHHHHHHHHh
Confidence 34456678899999887543
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.90 E-value=5.5e+02 Score=18.14 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=19.0
Q ss_pred hhhhcccchhhhchhhhHHHHHHHHHHHHHHHHHHHHH
Q 048307 16 RIARMMTWYNSLGHRASIYGVAAGYCLSASLLAIINKW 53 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~v~~Y~~~S~~mv~lNK~ 53 (271)
.-++.++.|.+...+..=..-++.-++..+.+++-+|.
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHcCcc
Confidence 34455677444333333233344455566666666663
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=6.62 E-value=2.7e+02 Score=24.89 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhheeecccCCCCCCC
Q 048307 212 TLGLLICMLGGVTYQQSPTNKPRAVN 237 (271)
Q Consensus 212 ~~gi~i~l~gg~lYs~ak~~~~~~~~ 237 (271)
+.+..+.+.|-.+|-..++|+++.+.
T Consensus 411 ~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (445)
T 3l1l_A 411 MWSFVTLMVITAMYALNYNRLHKNPY 436 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 34555566777788877755544433
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=6.10 E-value=1.1e+02 Score=28.40 Aligned_cols=20 Identities=25% Similarity=0.430 Sum_probs=11.5
Q ss_pred hhhHHHHHH-HHhhhhheeec
Q 048307 209 RVGTLGLLI-CMLGGVTYQQS 228 (271)
Q Consensus 209 ~~~~~gi~i-~l~gg~lYs~a 228 (271)
|.-|+|=.+ +++|+++|...
T Consensus 248 WVywvgPiiGailaallY~~l 268 (340)
T 3iyz_A 248 WIYWVGPIIGAVLAGALYEYV 268 (340)
T ss_pred eehhHHHHHHHHHHHHHHHHH
Confidence 334444433 56788888744
Done!