Query 048307
Match_columns 271
No_of_seqs 121 out of 345
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 14:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vpua_ g.34.1.1 (A:) HIV-1 VP 18.8 10 0.00076 23.5 -0.2 21 248-268 13-33 (45)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 12.6 32 0.0023 18.6 0.8 14 213-226 3-16 (27)
3 d1v54l_ f.23.6.1 (L:) Mitochon 7.3 41 0.003 20.7 -0.1 13 57-69 31-43 (46)
4 d1kqfb2 f.23.22.1 (B:246-290) 4.9 1.5E+02 0.011 17.9 1.6 26 199-224 4-29 (45)
5 d1xoua_ a.231.1.1 (A:) Secrete 2.8 1.9E+02 0.014 21.9 0.7 22 208-229 7-28 (160)
6 d1u19a_ f.13.1.2 (A:) Rhodopsi 2.4 1.1E+03 0.078 17.2 7.6 40 34-73 38-83 (348)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 2.2 2.3E+02 0.017 18.8 0.4 22 216-237 29-50 (91)
8 d1deca_ g.3.15.2 (A:) Decorsin 2.1 2.4E+02 0.017 15.9 0.4 10 254-263 6-15 (39)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 2.0 3.5E+02 0.026 17.9 1.3 33 212-244 36-68 (100)
10 d1wpga4 f.33.1.1 (A:1-124,A:24 2.0 1.6E+03 0.11 18.1 6.4 68 172-239 196-305 (472)
No 1
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=18.78 E-value=10 Score=23.52 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=15.3
Q ss_pred hhhhccccccccchhhhhhcc
Q 048307 248 KARAGGQAARGMQEKTHATRE 268 (271)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~ 268 (271)
.+++.+.-|++|+|.|++.-|
T Consensus 13 RAEDSGNESeGD~eELs~lve 33 (45)
T d1vpua_ 13 RAEDSGNESEGDQEELSALVE 33 (45)
T ss_dssp TTCHHHHTTTTHHHHTCSSCC
T ss_pred HcccCCCCCcccHHHHHHHHh
Confidence 344456678999999998654
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.64 E-value=32 Score=18.63 Aligned_cols=14 Identities=50% Similarity=0.992 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhhee
Q 048307 213 LGLLICMLGGVTYQ 226 (271)
Q Consensus 213 ~gi~i~l~gg~lYs 226 (271)
+|+.+.-+||++|.
T Consensus 3 lgli~~tl~glf~a 16 (27)
T d2e74g1 3 LGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 57778888888875
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.31 E-value=41 Score=20.70 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=6.6
Q ss_pred cCCchHHHHHHHH
Q 048307 57 KFAYPEALTALRY 69 (271)
Q Consensus 57 ~Fp~P~~L~~~Q~ 69 (271)
+|..|+++.=-|+
T Consensus 31 gfa~PF~ivRhqL 43 (46)
T d1v54l_ 31 GFAAPFFIVRHQL 43 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cccchHHHHHHHH
Confidence 3555555554443
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.95 E-value=1.5e+02 Score=17.93 Aligned_cols=26 Identities=12% Similarity=0.399 Sum_probs=20.8
Q ss_pred HHHhcCcccchhhHHHHHHHHhhhhh
Q 048307 199 NLAFWDKHSTRVGTLGLLICMLGGVT 224 (271)
Q Consensus 199 ~v~~fd~~~S~~~~~gi~i~l~gg~l 224 (271)
++-+|....-+++.+++..+.+|+++
T Consensus 4 ~V~lWKgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 4 SVSLWKGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46678888888999998888877765
No 5
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli [TaxId: 562]}
Probab=2.75 E-value=1.9e+02 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHhhhhheeecc
Q 048307 208 TRVGTLGLLICMLGGVTYQQSP 229 (271)
Q Consensus 208 S~~~~~gi~i~l~gg~lYs~ak 229 (271)
+-.+.++..+-++...++....
T Consensus 7 ~~~~vF~~~l~mf~~~~~~ls~ 28 (160)
T d1xoua_ 7 NKLGVFQAAILMFAYMYQAQSD 28 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3445566666666555544433
No 6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.36 E-value=1.1e+03 Score=17.22 Aligned_cols=40 Identities=23% Similarity=0.016 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh------hcCCchHHHHHHHHHHHH
Q 048307 34 YGVAAGYCLSASLLAIINKWAT------MKFAYPEALTALRYLTSA 73 (271)
Q Consensus 34 ~~~v~~Y~~~S~~mv~lNK~vL------~~Fp~P~~L~~~Q~~vt~ 73 (271)
.+.+++|.+.++.-++.|=.++ .++..|.-+....+.++=
T Consensus 38 ~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaD 83 (348)
T d1u19a_ 38 SMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHH
Confidence 3555677777777778888765 246667666666665553
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.17 E-value=2.3e+02 Score=18.80 Aligned_cols=22 Identities=5% Similarity=-0.278 Sum_probs=13.6
Q ss_pred HHHHhhhhheeecccCCCCCCC
Q 048307 216 LICMLGGVTYQQSPTNKPRAVN 237 (271)
Q Consensus 216 ~i~l~gg~lYs~ak~~~~~~~~ 237 (271)
++...|.++|.--|+|+++.++
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHhhheeeeccCCcc
Confidence 3455666778877776555443
No 8
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=2.15 E-value=2.4e+02 Score=15.93 Aligned_cols=10 Identities=40% Similarity=0.272 Sum_probs=6.4
Q ss_pred ccccccchhh
Q 048307 254 QAARGMQEKT 263 (271)
Q Consensus 254 ~~~~~~~~~~ 263 (271)
|-..|||||-
T Consensus 6 qcqgddqekc 15 (39)
T d1deca_ 6 QCQGDDQEKC 15 (39)
T ss_dssp BCCSSCSSCE
T ss_pred cccCcchhhc
Confidence 4445788874
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.03 E-value=3.5e+02 Score=17.91 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhheeecccCCCCCCCccchhhc
Q 048307 212 TLGLLICMLGGVTYQQSPTNKPRAVNETEVQET 244 (271)
Q Consensus 212 ~~gi~i~l~gg~lYs~ak~~~~~~~~~~~~~~~ 244 (271)
...+.+.+.+..+|.--++|+++.+.....+++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n 68 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRNKVPARFTHN 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCccccCc
No 10
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=1.97 E-value=1.6e+03 Score=18.11 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----------------------------------HHhhhhHHHHHHHHHHHHHHhcCcccchhhHHHHHH
Q 048307 172 LPLGFSCFFG----------------------------------GFTVLGGAVNKSLNVVINLAFWDKHSTRVGTLGLLI 217 (271)
Q Consensus 172 ~~l~~S~v~G----------------------------------T~svvG~~lnk~~~~v~~v~~fd~~~S~~~~~gi~i 217 (271)
+++.++-.++ .|++.....+.....+..++.+..|.++.+++-+.+
T Consensus 196 Lp~~vti~La~~~~rmak~~~lVr~L~avE~~g~~~~~~~~k~i~~~l~~n~~~v~~~~~~~~l~~p~pl~~~qILwinl 275 (472)
T d1wpga4 196 LPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNL 275 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEESCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHhHHhhhhhhhhhHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q ss_pred HH--hhhhheeecc------cCCCCCCCcc
Q 048307 218 CM--LGGVTYQQSP------TNKPRAVNET 239 (271)
Q Consensus 218 ~l--~gg~lYs~ak------~~~~~~~~~~ 239 (271)
.. +.++...+.| .|+|+++++.
T Consensus 276 i~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~ 305 (472)
T d1wpga4 276 VTDGLPATALGFNPPDLDIMDRPPRSPKEP 305 (472)
T ss_dssp TTTHHHHHHHTTCCCCSGGGGSCCCCTTCC
T ss_pred HhHHHHHHHHhcCCCchhhhcCCCCCCCcc
Done!