BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048308
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 46/182 (25%)
Query: 3 LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNIDYNNNPLSRT 56
+K + GVS GE +A+LGPSG GKTT L G + ++GE ++ N+ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY- 74
Query: 57 VKRKTGFVAHSNVFYLHLTVTETLVF------------------IA--------LFRLPI 90
R+ G V + Y H+TV E + F IA L R P
Sbjct: 75 --REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 91 -------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSY 143
+RV+ A+ L+ P +L DEP S LD+ + ++++ +E H+ + G+ S
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL--RMIMRAEIK--HLQQELGITSV 188
Query: 144 FV 145
+V
Sbjct: 189 YV 190
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 37/140 (26%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVF 70
GE +A+LGPSG GK+TL T+ G T G I ++ ++ R G V +
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGLVFQNWAL 86
Query: 71 YLHLTVTETLVF-IALFRLP--------------------------------IKRVSRAQ 97
Y H+TV + + F + L + P +RV+ A+
Sbjct: 87 YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146
Query: 98 ELLINPSLLFLDEPASGLDS 117
L+ P +L LDEP S LD+
Sbjct: 147 ALVKEPEVLLLDEPLSNLDA 166
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 61/151 (40%), Gaps = 47/151 (31%)
Query: 13 GELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
GE + +GPSG GK+T L T G L GE R N+ P +R G V
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR----MNDTP---PAERGVGMVF 81
Query: 66 HSNVFYLHLTVTETLVF------------------IA--------LFRLPI-------KR 92
S Y HL+V E + F +A L R P +R
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141
Query: 93 VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
V+ + L+ PS+ LDEP S LD+ + Q+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 61/151 (40%), Gaps = 47/151 (31%)
Query: 13 GELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
GE + +GPSG GK+T L T G L GE R N+ P +R G V
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR----MNDTP---PAERGVGMVF 81
Query: 66 HSNVFYLHLTVTETLVF------------------IA--------LFRLPI-------KR 92
S Y HL+V E + F +A L R P +R
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141
Query: 93 VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
V+ + L+ PS+ LDEP S LD+ + Q+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 70/177 (39%), Gaps = 48/177 (27%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-------NIDY-NNNPL 53
ILKGI GE ++I+G SG GK+TL LG L T G +DY N L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 54 SRTVKRKTGFVAHSNVFYLHLTVTETLVF--------------------------IALFR 87
S RK GFV + LT E ++ L R
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 88 LPI-------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
P +RV+ A+ L P LLF DEP LDS K+++ +N G S+
Sbjct: 137 KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 47/151 (31%)
Query: 13 GELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
GE + +GPSG GK+T L T G L GE R N+ P +R G V
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR----MNDTP---PAERGVGMVF 81
Query: 66 HSNVFYLHLTVTETLVF------------------IA--------LFRLPI-------KR 92
S Y HL+V E + F +A L R P +R
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141
Query: 93 VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
V+ + L+ PS+ LD+P S LD+ + Q+
Sbjct: 142 VAIGRTLVAEPSVFLLDQPLSNLDAALRVQM 172
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 48/212 (22%)
Query: 4 KGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVK 58
+ +RGVS GE++ +LGPSG GKTT+ + G T+G++ ++ K
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQK 86
Query: 59 RKTGFVAHSNVFYLHLT----------------------VTETLVFIALF----RLP--- 89
R G V + + H+T V E L F+ L R P
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146
Query: 90 ----IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFV 145
+RV+ A+ L P +L DEP + +D+ I ++ L + +H GV S FV
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE--LRTFVRQVH--DEMGVTSVFV 202
Query: 146 GIGFEPSAAMNPSDFLLDLANGVVS--GDPKD 175
+ A+ +D +L L G V G P++
Sbjct: 203 --THDQEEALEVADRVLVLHEGNVEQFGTPEE 232
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 51/183 (27%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRK 60
IL+G+ GE+ AI+GP+G GK+TL TL GR T G +++ L+ + + +
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 61 TG---FVAH---------SNVFYLHLTVT--------ETL----------VFIALFRLPI 90
G F+A SN F+L + ETL IAL ++P
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 91 KRVSRA----------------QELLINPSLLFLDEPASGLDSTIAKQILLNSEG-NSLH 133
++R+ Q ++ P L LDE SGLD K + ++G NSL
Sbjct: 136 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV---ADGVNSLR 192
Query: 134 VGK 136
GK
Sbjct: 193 DGK 195
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 51/183 (27%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRK 60
IL+G+ GE+ AI+GP+G GK+TL TL GR T G +++ L+ + + +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 61 TG---FVAH---------SNVFYLHLTVT--------ETL----------VFIALFRLPI 90
G F+A SN F+L + ETL IAL ++P
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 91 KRVSRA----------------QELLINPSLLFLDEPASGLDSTIAKQILLNSEG-NSLH 133
++R+ Q ++ P L LDE SGLD K + ++G NSL
Sbjct: 155 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV---ADGVNSLR 211
Query: 134 VGK 136
GK
Sbjct: 212 DGK 214
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPLSRTVKRKTGFVAHSNV 69
GE L +LGPSG GKTT + G E R G+ D P R V S
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK---DRNISMVFQSYA 93
Query: 70 FYLHLTVTETLVF---IALF-----------------------RLPI-------KRVSRA 96
+ H+TV E + F I F R P +RV+ A
Sbjct: 94 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 153
Query: 97 QELLINPSLLFLDEPASGLDSTI 119
+ +++ P +L +DEP S LD+ +
Sbjct: 154 RAIVVEPDVLLMDEPLSNLDAKL 176
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPLSRTVKRKTGFVAHSNV 69
GE L +LGPSG GKTT + G E R G+ D P R V S
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK---DRNISMVFQSYA 94
Query: 70 FYLHLTVTETLVF---IALF-----------------------RLPI-------KRVSRA 96
+ H+TV E + F I F R P +RV+ A
Sbjct: 95 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 154
Query: 97 QELLINPSLLFLDEPASGLDSTI 119
+ +++ P +L +DEP S LD+ +
Sbjct: 155 RAIVVEPDVLLMDEPLSNLDAKL 177
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 13 GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGN---IDYNNNPLSRTVKRKTGFVAHS 67
GE ILGPSG GKTT + G STGE + + N + RK G V +
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90
Query: 68 NVFYLHLTVTETLVF----IALFRLPIK-----------------------------RVS 94
Y +LT E + F + + + I+ RV+
Sbjct: 91 WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150
Query: 95 RAQELLINPSLLFLDEPASGLDS 117
A+ L+ +PSLL LDEP S LD+
Sbjct: 151 LARALVKDPSLLLLDEPFSNLDA 173
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 13 GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGN---IDYNNNPLSRTVKRKTGFVAHS 67
GE ILGPSG GKTT + G STGE + + N + RK G V +
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90
Query: 68 NVFYLHLTVTETLVF----IALFRLPIK-----------------------------RVS 94
Y +LT E + F + + + I+ RV+
Sbjct: 91 WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVA 150
Query: 95 RAQELLINPSLLFLDEPASGLDS 117
A+ L+ +PSLL LDEP S LD+
Sbjct: 151 LARALVKDPSLLLLDEPFSNLDA 173
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 37/133 (27%)
Query: 18 ILGPSGRGKTTLPTTLGG--RLSTGETRGN-IDYNNNPLSRTVKRKTGFVAHSNVFYLHL 74
+LGP+G GK+ + G + GE R N D P R R GFV + HL
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER---RGIGFVPQDYALFPHL 85
Query: 75 TVTETLVF----------------------IA--LFRLPIK-------RVSRAQELLINP 103
+V + + IA L R P + RV+ A+ L+I P
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145
Query: 104 SLLFLDEPASGLD 116
LL LDEP S +D
Sbjct: 146 RLLLLDEPLSAVD 158
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 43/155 (27%)
Query: 13 GELLAILGPSGRGKTTLPTTLG--GRLSTGETR-GNI---DYNNNPLSRTVKRKTGFVAH 66
GE ++I+GPSG GK+T+ +G + + GE NI D +++ L++ + K GFV
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 67 SNVFYLHLTVTETLVFIALFRL-------------------------------------P 89
LT E + +F+
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150
Query: 90 IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
+RV+ A+ L NP ++ D+P LDS ++I+
Sbjct: 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 38/161 (23%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT----V 57
+LKGI GE++ ++GPSG GK+T L E ID N T V
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 58 KRKTGFVAHSNVFYLHLTVTE--TLVFIALFRLP-------------------------- 89
+ + G V + H+TV TL + + + P
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 90 ------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
+RV+ A+ L + P ++ DEP S LD + ++L
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL 178
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 30/134 (22%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
GE ILGP+G GKT + G R +D + K FV + +
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85
Query: 73 HLTVTETLVFIA-----------------------LFRLPI-------KRVSRAQELLIN 102
H+ V + L F L R P+ +RV+ A+ L+ N
Sbjct: 86 HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145
Query: 103 PSLLFLDEPASGLD 116
P +L LDEP S LD
Sbjct: 146 PKILLLDEPLSALD 159
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 38/161 (23%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT----V 57
+LKGI GE++ ++GPSG GK+T L E ID N T V
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 58 KRKTGFVAHSNVFYLHLTVTE--TLVFIALFRLP-------------------------- 89
+ + G V + H+TV TL + + + P
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 90 ------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
+RV+ A+ L + P ++ DEP S LD + ++L
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL 199
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 43/151 (28%)
Query: 13 GELLAILGPSGRGKTTLPTTLGG--RLSTGET--RGNIDYNNNPLSRTVKRKTGFVAHSN 68
GE+L I+G SG GKTTL L G + +GE G ++ N +R+ G++
Sbjct: 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89
Query: 69 VFYLHLTVTETLVF--------IALFRLPIKRVSRAQEL--------------------- 99
V + HLTV + + A R +R+ EL
Sbjct: 90 VLFPHLTVYRNIAYGLGNGKGRTAQER---QRIEAMLELTGISELAGRYPHELSGGQQQR 146
Query: 100 -------LINPSLLFLDEPASGLDSTIAKQI 123
+P L+ LDEP S LD + +QI
Sbjct: 147 AALARALAPDPELILLDEPFSALDEQLRRQI 177
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 43/155 (27%)
Query: 13 GELLAILGPSGRGKTTLPTTLG--GRLSTGETR-GNI---DYNNNPLSRTVKRKTGFVAH 66
GE ++I+GPSG GK+T+ +G + + GE NI D +++ L++ + K GFV
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 67 SNVFYLHLTVTETLVFIALFRL-------------------------------------P 89
LT E + +F+
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150
Query: 90 IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
+RV+ A+ L NP ++ D+P LDS ++I+
Sbjct: 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 43/148 (29%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK--------RKTGFV 64
GE L +LGPSG GKTT + G TRG I +N ++ K R V
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEP--TRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 65 AHSNVFYLHLTVTETLVF-IALFRLPI--------------------------------K 91
S Y H TV + + F + L ++P +
Sbjct: 90 FQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQ 149
Query: 92 RVSRAQELLINPSLLFLDEPASGLDSTI 119
RV+ + ++ P + DEP S LD+ +
Sbjct: 150 RVALGRAIIRRPKVFLXDEPLSNLDAKL 177
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 42/162 (25%)
Query: 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT------ 56
LKGI GE+ AILG +G GK+TL G L + G I ++N P+ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPIDYSRKGIMK 81
Query: 57 VKRKTGFVAHS-NVFYLHLTVTETLVFIAL-FRLP------------------------- 89
++ G V + +V + + F A+ +LP
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT 141
Query: 90 -------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
KRV+ A L++ P +L LDEP +GLD +I+
Sbjct: 142 HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 33/142 (23%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
G ++ GP+G GKTTL T+ L +G I YN P+++ VK K F+ +
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPITK-VKGKIFFLPEEIIVPR 91
Query: 73 HLTVTETLVFIA------------------------------LFRLPIKRVSRAQELLIN 102
++V + L +A L + I+RV A LL+N
Sbjct: 92 KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151
Query: 103 PSLLFLDEPASGLDSTIAKQIL 124
+ LD+P +D ++L
Sbjct: 152 AEIYVLDDPVVAIDEDSKHKVL 173
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 38/158 (24%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTT--------------LPTTLGGRL--STGETRGN 45
ILKGI GE+ ++GP+G GKTT + T G + E R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 46 IDY--------NNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIK-RVSR- 95
I Y N ++ GF A S+ + E IA IK RVS
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--ERATEIAGLGEKIKDRVSTY 147
Query: 96 ----------AQELLINPSLLFLDEPASGLDSTIAKQI 123
A+ L++NP L LDEP SGLD A+++
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 43/154 (27%)
Query: 13 GELLAILGPSGRGKTTLPTTLG--GRLSTGETR-GNI---DYNNNPLSRTVKRKTGFVAH 66
GE ++I GPSG GK+T +G + + GE NI D +++ L++ + K GFV
Sbjct: 31 GEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 67 SNVFYLHLTVTETLVFIALFRL-------------------------------------P 89
LT E + +F+
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQ 150
Query: 90 IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
+RV+ A+ L NP ++ DEP LDS ++I
Sbjct: 151 QQRVAIARALANNPPIILADEPTGALDSKTGEKI 184
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 43/148 (29%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK--------RKTGFV 64
GE + +LGPSG GKTT + G +RG I + ++ K R V
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 65 AHSNVFYLHLTVTETLVF-IALFRLP----IKRVSRAQELL------------------- 100
S Y H+TV + + F + L ++P +RV ELL
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ 146
Query: 101 ---------INPSLLFLDEPASGLDSTI 119
P + +DEP S LD+ +
Sbjct: 147 RVALGRAIVRKPQVFLMDEPLSNLDAKL 174
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI 46
ILKG+ V GE+ A++GP+G GK+TL L G RG I
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI 62
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 51/162 (31%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTL--------PTTLGGRLSTGETRGNIDYNNNPL 53
ILK I + G+ + G +G GKTTL P T G G+ G + Y+
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYS---- 91
Query: 54 SRTVKRKTGFVAHS--NVFYLHLTVTETLVFIALFRLPI--------------------- 90
+ TV++ GFV+HS F V + ++ A + +
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGX 151
Query: 91 ----------------KRVSRAQELLINPSLLFLDEPASGLD 116
+RV A+ L P +L LDEPA+GLD
Sbjct: 152 SAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 41/163 (25%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPT-------TLGGR----------LSTGETRG 44
ILKG+ G+ LA++GPSG GK+T+ TLGG L+ TR
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 45 ------------------NIDYNNNPLSRTVKR--KTGFVAHSNVFYLHLTVT-ETLVFI 83
NI Y +P S T+ + + +A+ + F L ET V
Sbjct: 1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGD 1213
Query: 84 ALFRLP---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
+L +R++ A+ L+ NP +L LDE S LD+ K +
Sbjct: 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLDS 117
+R++ A+ L+ NP +L LDE S LD+
Sbjct: 561 QRIAIARALVRNPKILLLDEATSALDA 587
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
G + GE++ ILGP+G GKTT L G ++ E
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADE 322
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
+RVS A+ L + P +L DEP S LD + ++L L EG ++
Sbjct: 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 44/203 (21%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL-STGET------------RGNIDY 48
+LK + G++ ++G +G GKTTL L G L + GE R N+ Y
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 49 N-NNPLSR----TVKRKTGF---VAHSNVFYLHLTVTETLVFIALFRL----PI------ 90
NP S+ TV+ F + + + + + L + L L P+
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQ 145
Query: 91 -KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--LLNSEGNSLHVGKGDGVMSYFVGI 147
+R++ A L + L LDEP S LD ++I +L S N GKG ++++ +
Sbjct: 146 KQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE---GKGIILVTHEL-- 200
Query: 148 GFEPSAAMNPSDFLLDLANGVVS 170
++ DF+L ++NG +
Sbjct: 201 -----EYLDDMDFILHISNGTID 218
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS 54
GE+L ++GP+G GK+TL + G +++G +G+I + PL
Sbjct: 26 GEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLE 64
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLS 38
GE++AI+GP+G GK+TL L G LS
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS 54
GE+L ++GP+G GK+TL + G +++G +G+I + PL
Sbjct: 26 GEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLE 64
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 32/129 (24%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA---HSNV 69
GE++ I+GP+G GKTT L G T G ++++ TV K ++ V
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD-----LTVAYKPQYIKAEYEGTV 434
Query: 70 FYL-----------HLTVTETLVFIALFRL-----------PIKRVSRAQELLINPSLLF 107
+ L + TE L + + L ++RV+ A LL + +
Sbjct: 435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 494
Query: 108 LDEPASGLD 116
LDEP++ LD
Sbjct: 495 LDEPSAYLD 503
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50
G ++ I+GP+G GKTT L G+L N ++N
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 32/129 (24%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA---HSNV 69
GE++ I+GP+G GKTT L G T G ++++ TV K ++ V
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD-----LTVAYKPQYIKAEYEGTV 420
Query: 70 FYL-----------HLTVTETLVFIALFRL-----------PIKRVSRAQELLINPSLLF 107
+ L + TE L + + L ++RV+ A LL + +
Sbjct: 421 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 480
Query: 108 LDEPASGLD 116
LDEP++ LD
Sbjct: 481 LDEPSAYLD 489
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50
G ++ I+GP+G GKTT L G+L N ++N
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 140
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 32/129 (24%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA---HSNV 69
GE++ I+GP+G GKTT L G T G I+++ TV K ++ V
Sbjct: 312 GEVIGIVGPNGIGKTTFVKXLAGVEEP--TEGKIEWD-----LTVAYKPQYIKADYEGTV 364
Query: 70 FYL-----------HLTVTETLVFIALFRL-----------PIKRVSRAQELLINPSLLF 107
+ L + TE L + + L ++RV+ A LL + +
Sbjct: 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL 424
Query: 108 LDEPASGLD 116
LDEP++ LD
Sbjct: 425 LDEPSAYLD 433
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 90 IKRVSRAQELLINPSLLFLDEPASGLDS----TIAKQI-LLNSEGNSLHVGKGD-GVMSY 143
++RV+ A LL N + F DEP+S LD A+ I L+ EG S+ V + D V+ Y
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223
Query: 144 FVGI 147
I
Sbjct: 224 LSDI 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLDS 117
+R++ A+ LL NP +L LDE S LD+
Sbjct: 490 QRIAIARALLKNPKILLLDEATSALDA 516
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 3 LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
K + GVS + G++ I+GP+G GK+TL + G L E R
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 63
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 3 LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
K + GVS + G++ I+GP+G GK+TL + G L E R
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 63
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS 54
GE+L ++GP+G GK+TL G S +G+I + PL
Sbjct: 26 GEILHLVGPNGAGKSTLLARXAGXTS---GKGSIQFAGQPLE 64
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS 54
GE+L ++GP+G GK+TL G S +G+I + PL
Sbjct: 26 GEILHLVGPNGAGKSTLLARXAGXTS---GKGSIQFAGQPLE 64
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLDS 117
+R++ A+ LL NP +L LDE S LD+
Sbjct: 521 QRIAIARALLKNPKILLLDEATSALDA 547
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 52/157 (33%)
Query: 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTG 62
L+ + V + GE L + G +G GK+TL + G + T G++ Y+ +RK G
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDG-------ERKKG 73
Query: 63 FVAHSNV--------------------------FYLHLT----VTETLVFIAL------F 86
+ N+ FY V + + F+ L
Sbjct: 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD 133
Query: 87 RLPI-------KRVSRAQELLINPSLLFLDEPASGLD 116
R+P +RV+ A ++ P +L LDEP GLD
Sbjct: 134 RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 61/174 (35%), Gaps = 52/174 (29%)
Query: 3 LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNN------ 50
K + GVS G++ I+GP+G GK+TL + G L E R N D N
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 51 ------------NPLSRTVKRKTGFVAHSN--------VFYLHLTVTET---------LV 81
PL + + N +FY E L
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 82 FIALFRL-----------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
F+ L L +K V + L+ NP ++ +DEP +G+ +A I
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 52/157 (33%)
Query: 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTG 62
L+ + V + GE L + G +G GK+TL + G + T G++ Y+ +RK G
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDG-------ERKKG 75
Query: 63 FVAHSNV--------------------------FYLHLT----VTETLVFIAL------F 86
+ N+ FY V + + F+ L
Sbjct: 76 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD 135
Query: 87 RLPI-------KRVSRAQELLINPSLLFLDEPASGLD 116
R+P +RV+ A ++ P +L LDEP GLD
Sbjct: 136 RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 172
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
+LK I GE+LAI G +G GKT+L + G L E
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
+LK I GE+LAI G +G GKT+L + G L E
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
+LK I GE+LAI G +G GKT+L + G L E
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
+LK I GE+LAI G +G GKT+L + G L E
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 11 SLGELLAILGPSGRGKTTLPTTLGGRL--STGE 41
SL +A++GP+G GK+TL L G L ++GE
Sbjct: 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
+LK I GE+LAI G +G GKT+L + G L E
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLDS 117
+R++ A+ L+ NP +L LDE S LD+
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDT 559
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLDS 117
+R++ A+ L+ NP +L LDE S LD+
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDT 559
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 91 KRVSRAQELLINPSLLFLDEPASGLD 116
+RV A LL++P +L LDEP S LD
Sbjct: 161 QRVLIALALLLDPVVLILDEPTSALD 186
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 11 SLGELLAILGPSGRGKTTLPTTLGGRL--STGE 41
SL +A++GP+G GK+TL L G L ++GE
Sbjct: 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 11 SLGELLAILGPSGRGKTTLPTTLGGRL--STGE 41
SL +A++GP+G GK+TL L G L ++GE
Sbjct: 691 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 723
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN--NPLSRTVKR 59
ILK I GE +A +G SG GK+TL + + ID +N + L+ +++
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 60 KTGFVAHSNVFYLHL----------TVTETLVFIA---------LFRLPI---------- 90
+ G V N+ + T T+ V A + LP
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475
Query: 91 --------KRVSRAQELLINPSLLFLDEPASGLD 116
+R+S A+ L NP +L LDE S LD
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 45/173 (26%)
Query: 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-----NNPLSRTV 57
+KGI G+++ ++G +G GKTT + + G + +G I +N N P
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVIN 79
Query: 58 KRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLIN--------------- 102
+ V + LTV E L A R + + R E + +
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT 139
Query: 103 ------------------PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
P LL DEP+ GL + ++ +N EG ++
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 33/136 (24%)
Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT---VKRKTGF------ 63
GE + ILGP+G GKTTL + G L GNI N + + ++ T
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLPYS---GNIFINGMEVRKIRNYIRYSTNLPEAYEI 86
Query: 64 -VAHSNVFYLH--LTVTETLVFIAL----------FRLPIKRVSRAQELLI--------N 102
V +++ YL+ L + +F+ + R + ++S Q +L+
Sbjct: 87 GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146
Query: 103 PSLLFLDEPASGLDST 118
P ++ LDEP +D+
Sbjct: 147 PEIVGLDEPFENVDAA 162
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 76
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 43/163 (26%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTL--------GGRLSTG------------- 40
+LK I G+ +A++GP+G GKTT+ L G L G
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 41 --------------ETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHL------TVTETL 80
+ N+ Y N + ++ + HS+ F HL +T+
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489
Query: 81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
++ + + ++RA L NP +L LDE S +D+ K I
Sbjct: 490 EDLSQGQRQLLAITRA--FLANPKILILDEATSNVDTKTEKSI 530
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
>pdb|1T06|A Chain A, 1.9 A Crystal Structure Of A Protein Of Unknown Function
From Bacillus Cereus Atcc 14579
pdb|1T06|B Chain B, 1.9 A Crystal Structure Of A Protein Of Unknown Function
From Bacillus Cereus Atcc 14579
Length = 235
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 112 ASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDF 160
A+G IAK+I LN E G+ YF GI +P AM+ SDF
Sbjct: 35 ATGAMKPIAKKIKLNQELAEELYATGNYDAMYFAGIIADPK-AMSESDF 82
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR 43
+LK I G+LLA+ G +G GKT+L + G L E +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE 41
+L G S E+L ++G +G GKTTL L G L E
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE 406
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
+L G+ G L+A+LG +G GK+TL L RL E RG ++ + + RTVK K
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTL-MNLIPRLIDPE-RGRVEVDELDV-RTVKLK 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,056,852
Number of Sequences: 62578
Number of extensions: 430946
Number of successful extensions: 1172
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 150
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)