Query 048308
Match_columns 413
No_of_seqs 256 out of 3176
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 4.1E-76 9E-81 626.1 39.0 405 1-412 44-611 (613)
2 PLN03211 ABC transporter G-25; 100.0 1.4E-74 3.1E-79 619.8 43.6 410 1-410 82-659 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 3E-71 6.5E-76 592.4 43.0 409 1-411 39-615 (617)
4 PLN03140 ABC transporter G fam 100.0 4.3E-70 9.3E-75 623.6 39.3 409 1-409 179-789 (1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-69 3.6E-74 619.8 41.6 410 1-410 75-695 (1394)
6 PLN03140 ABC transporter G fam 100.0 1.7E-68 3.7E-73 610.5 40.2 404 2-412 895-1469(1470)
7 KOG0065 Pleiotropic drug resis 100.0 2.2E-68 4.7E-73 580.2 25.2 402 1-409 805-1383(1391)
8 TIGR00956 3a01205 Pleiotropic 100.0 6.5E-66 1.4E-70 590.3 41.0 402 2-411 778-1392(1394)
9 KOG0065 Pleiotropic drug resis 100.0 4E-66 8.7E-71 562.5 26.5 409 1-409 129-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.7E-34 5.8E-39 261.9 12.1 155 1-169 16-214 (240)
11 COG1131 CcmA ABC-type multidru 100.0 2.3E-33 4.9E-38 274.6 14.1 120 2-123 20-175 (293)
12 COG1127 Ttg2A ABC-type transpo 100.0 2.2E-32 4.7E-37 253.0 11.1 160 1-174 22-229 (263)
13 COG3839 MalK ABC-type sugar tr 100.0 3.9E-32 8.4E-37 267.1 12.6 137 2-140 18-221 (338)
14 COG1116 TauB ABC-type nitrate/ 100.0 1.8E-32 3.9E-37 256.2 9.4 152 1-167 17-207 (248)
15 COG3842 PotA ABC-type spermidi 100.0 2.5E-32 5.5E-37 269.7 10.9 153 2-164 20-240 (352)
16 COG3638 ABC-type phosphate/pho 100.0 2.1E-31 4.5E-36 245.9 12.1 175 1-190 18-246 (258)
17 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-31 2.9E-36 241.5 8.6 159 2-174 17-216 (245)
18 COG0410 LivF ABC-type branched 100.0 6.3E-31 1.4E-35 242.5 12.7 121 1-123 17-175 (237)
19 COG1117 PstB ABC-type phosphat 100.0 8E-31 1.7E-35 238.4 13.1 122 1-123 21-188 (253)
20 COG1120 FepC ABC-type cobalami 100.0 2.2E-31 4.9E-36 252.7 10.0 175 1-189 16-237 (258)
21 COG1136 SalX ABC-type antimicr 100.0 2.1E-30 4.5E-35 241.6 15.6 152 2-168 20-219 (226)
22 COG1125 OpuBA ABC-type proline 100.0 6.6E-31 1.4E-35 244.5 11.8 121 1-123 15-174 (309)
23 COG1118 CysA ABC-type sulfate/ 100.0 1.3E-30 2.8E-35 248.5 11.1 120 2-123 17-176 (345)
24 PRK13537 nodulation ABC transp 100.0 5.3E-30 1.1E-34 252.5 14.7 120 2-123 22-177 (306)
25 COG1135 AbcC ABC-type metal io 100.0 2.6E-30 5.6E-35 246.8 12.0 120 2-123 21-180 (339)
26 PRK11650 ugpC glycerol-3-phosp 100.0 8.1E-30 1.8E-34 255.8 14.9 120 2-123 19-173 (356)
27 COG0411 LivG ABC-type branched 100.0 2E-30 4.4E-35 240.8 8.9 173 2-188 19-247 (250)
28 TIGR03265 PhnT2 putative 2-ami 100.0 1.3E-29 2.8E-34 254.1 14.8 137 2-140 19-222 (353)
29 TIGR01188 drrA daunorubicin re 100.0 1.3E-29 2.8E-34 249.3 14.2 120 2-123 8-163 (302)
30 PRK11432 fbpC ferric transport 100.0 2E-29 4.3E-34 252.5 14.8 120 2-123 21-175 (351)
31 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-29 4.6E-34 238.8 13.9 155 2-170 15-216 (235)
32 TIGR00960 3a0501s02 Type II (G 100.0 8.9E-30 1.9E-34 238.3 10.9 131 2-134 18-193 (216)
33 PRK13536 nodulation factor exp 100.0 3.1E-29 6.7E-34 250.2 15.1 120 2-123 56-211 (340)
34 COG4152 ABC-type uncharacteriz 100.0 1.5E-29 3.3E-34 234.1 11.5 121 1-123 16-169 (300)
35 TIGR02314 ABC_MetN D-methionin 100.0 3.4E-29 7.3E-34 249.9 14.7 156 2-171 20-221 (343)
36 PRK09452 potA putrescine/sperm 100.0 3.5E-29 7.6E-34 252.5 14.9 120 2-123 29-183 (375)
37 cd03269 ABC_putative_ATPase Th 100.0 2E-29 4.4E-34 234.9 11.9 153 2-168 15-205 (210)
38 PRK10851 sulfate/thiosulfate t 100.0 4E-29 8.6E-34 250.6 14.5 120 2-123 17-175 (353)
39 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.3E-29 5E-34 237.9 11.9 152 2-167 19-215 (254)
40 cd03233 ABC_PDR_domain1 The pl 100.0 5.8E-29 1.3E-33 230.9 14.4 123 2-124 22-158 (202)
41 cd03263 ABC_subfamily_A The AB 100.0 4.3E-29 9.4E-34 234.1 13.6 155 2-170 17-211 (220)
42 PRK11607 potG putrescine trans 100.0 5.6E-29 1.2E-33 251.3 15.1 120 2-123 34-188 (377)
43 TIGR02673 FtsE cell division A 100.0 3E-29 6.6E-34 234.2 11.4 131 2-134 17-192 (214)
44 cd03265 ABC_DrrA DrrA is the A 100.0 7.6E-29 1.7E-33 232.7 14.1 155 2-170 15-211 (220)
45 TIGR01186 proV glycine betaine 100.0 8.1E-29 1.8E-33 248.6 15.1 120 2-123 8-168 (363)
46 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.3E-29 9.3E-34 233.8 12.3 131 2-134 19-196 (218)
47 COG2884 FtsE Predicted ATPase 100.0 4.5E-29 9.7E-34 223.3 11.6 136 1-138 16-196 (223)
48 cd03259 ABC_Carb_Solutes_like 100.0 2.9E-29 6.2E-34 234.3 10.8 153 2-168 15-208 (213)
49 cd03268 ABC_BcrA_bacitracin_re 100.0 3.4E-29 7.4E-34 233.0 11.3 153 2-168 15-203 (208)
50 TIGR03258 PhnT 2-aminoethylpho 100.0 8.5E-29 1.8E-33 248.8 14.7 120 2-123 20-176 (362)
51 cd03218 ABC_YhbG The ABC trans 100.0 4.2E-29 9.1E-34 236.1 11.2 155 2-170 15-212 (232)
52 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-28 2.6E-33 242.5 14.8 120 2-123 19-174 (303)
53 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-28 2.3E-33 231.7 13.6 156 2-171 15-212 (222)
54 cd03215 ABC_Carb_Monos_II This 100.0 3.6E-29 7.7E-34 228.5 10.0 131 2-134 15-159 (182)
55 COG1137 YhbG ABC-type (unclass 100.0 6.5E-30 1.4E-34 230.3 4.9 138 1-140 18-226 (243)
56 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-28 2.8E-33 242.1 14.5 120 2-123 17-172 (301)
57 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-28 3.5E-33 226.1 14.2 134 2-135 22-164 (192)
58 PRK11000 maltose/maltodextrin 100.0 1.3E-28 2.9E-33 248.3 14.9 120 2-123 18-172 (369)
59 cd03292 ABC_FtsE_transporter F 100.0 6.6E-29 1.4E-33 231.8 11.6 131 2-134 16-191 (214)
60 COG1124 DppF ABC-type dipeptid 100.0 1E-28 2.2E-33 229.3 12.8 157 2-172 22-223 (252)
61 cd03296 ABC_CysA_sulfate_impor 100.0 1.5E-28 3.2E-33 233.6 14.2 155 2-170 17-216 (239)
62 cd03266 ABC_NatA_sodium_export 100.0 5.5E-29 1.2E-33 233.1 11.1 131 2-134 20-191 (218)
63 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-28 3E-33 232.8 13.8 156 2-171 20-221 (233)
64 cd03230 ABC_DR_subfamily_A Thi 100.0 5.1E-29 1.1E-33 225.7 10.3 128 2-134 15-150 (173)
65 cd03226 ABC_cobalt_CbiO_domain 100.0 5.1E-29 1.1E-33 231.4 10.5 131 2-134 15-181 (205)
66 PRK13643 cbiO cobalt transport 100.0 2E-28 4.3E-33 239.4 15.1 157 2-161 21-255 (288)
67 PRK11153 metN DL-methionine tr 100.0 1.7E-28 3.6E-33 245.4 14.8 155 2-170 20-220 (343)
68 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-28 4.3E-33 232.1 14.2 155 2-170 15-222 (236)
69 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.6E-28 5.7E-33 229.0 14.7 153 2-169 19-212 (220)
70 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-28 5.9E-33 227.6 14.2 154 2-169 15-209 (213)
71 PRK11629 lolD lipoprotein tran 100.0 3.4E-28 7.3E-33 230.4 15.0 131 2-134 24-201 (233)
72 cd03256 ABC_PhnC_transporter A 100.0 2.1E-28 4.6E-33 232.4 13.4 158 2-173 16-227 (241)
73 cd03260 ABC_PstB_phosphate_tra 100.0 2.1E-28 4.6E-33 230.6 12.9 153 2-170 15-219 (227)
74 PRK10908 cell division protein 100.0 1.4E-28 3E-33 231.3 11.5 156 2-171 17-217 (222)
75 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.7E-28 8.1E-33 235.2 14.8 156 2-171 39-241 (269)
76 PRK09493 glnQ glutamine ABC tr 100.0 3.1E-28 6.7E-33 231.5 14.0 156 2-171 16-216 (240)
77 TIGR02315 ABC_phnC phosphonate 100.0 2.4E-28 5.1E-33 232.5 13.2 158 2-173 17-228 (243)
78 PRK13637 cbiO cobalt transport 100.0 4E-28 8.6E-33 237.1 15.0 120 2-123 22-183 (287)
79 PRK11264 putative amino-acid A 100.0 3.4E-28 7.3E-33 232.5 14.2 156 2-171 18-224 (250)
80 cd03213 ABCG_EPDR ABCG transpo 100.0 2.3E-28 5E-33 225.5 12.4 131 2-134 24-166 (194)
81 PRK13634 cbiO cobalt transport 100.0 3.4E-28 7.3E-33 238.0 14.3 119 2-123 22-184 (290)
82 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-28 2.4E-33 229.9 10.3 132 2-135 16-190 (211)
83 PRK11614 livF leucine/isoleuci 100.0 1.6E-28 3.4E-33 233.1 11.4 156 2-171 20-217 (237)
84 cd03229 ABC_Class3 This class 100.0 5.5E-29 1.2E-33 226.5 7.8 130 2-134 15-156 (178)
85 PRK13650 cbiO cobalt transport 100.0 1.1E-27 2.4E-32 233.1 17.0 120 2-123 22-179 (279)
86 cd03262 ABC_HisP_GlnQ_permease 100.0 2.4E-28 5.1E-33 227.9 11.1 131 2-134 15-190 (213)
87 TIGR03740 galliderm_ABC gallid 100.0 7.9E-28 1.7E-32 226.3 14.6 155 2-170 15-203 (223)
88 cd03257 ABC_NikE_OppD_transpor 100.0 2.5E-28 5.4E-33 229.9 11.1 153 2-168 20-223 (228)
89 PRK14247 phosphate ABC transpo 100.0 7.4E-28 1.6E-32 230.3 14.5 158 2-171 18-225 (250)
90 PRK13647 cbiO cobalt transport 100.0 8.8E-28 1.9E-32 233.2 15.1 120 2-123 20-177 (274)
91 TIGR03410 urea_trans_UrtE urea 100.0 6.1E-28 1.3E-32 228.0 13.5 157 2-172 15-213 (230)
92 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.2E-28 1.6E-32 229.4 14.0 156 2-171 16-216 (242)
93 PRK10895 lipopolysaccharide AB 100.0 7.1E-28 1.5E-32 229.2 13.4 156 2-171 18-217 (241)
94 cd03264 ABC_drug_resistance_li 100.0 7.7E-28 1.7E-32 224.4 13.2 120 2-124 15-170 (211)
95 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-27 2.6E-32 227.1 14.6 157 2-173 16-214 (236)
96 cd03234 ABCG_White The White s 100.0 1.2E-27 2.6E-32 225.6 14.5 135 1-135 21-199 (226)
97 PRK11831 putative ABC transpor 100.0 9.9E-28 2.1E-32 232.2 14.2 155 2-170 22-223 (269)
98 PRK13635 cbiO cobalt transport 100.0 9.1E-28 2E-32 233.7 14.0 120 2-123 22-179 (279)
99 PRK14267 phosphate ABC transpo 100.0 1.2E-27 2.7E-32 229.1 14.7 158 2-171 19-228 (253)
100 COG3840 ThiQ ABC-type thiamine 99.9 2.2E-28 4.9E-33 217.4 8.6 116 6-123 18-168 (231)
101 PRK13648 cbiO cobalt transport 99.9 1.5E-27 3.3E-32 230.8 15.2 154 2-170 24-221 (269)
102 PRK13631 cbiO cobalt transport 99.9 1.2E-27 2.6E-32 237.0 14.8 119 2-123 41-215 (320)
103 TIGR00972 3a0107s01c2 phosphat 99.9 1.4E-27 3E-32 228.1 14.5 157 2-171 16-223 (247)
104 PRK09536 btuD corrinoid ABC tr 99.9 7E-28 1.5E-32 244.7 13.0 120 2-123 18-178 (402)
105 PRK10070 glycine betaine trans 99.9 1.2E-27 2.6E-32 242.9 14.6 120 2-123 43-203 (400)
106 TIGR01166 cbiO cobalt transpor 99.9 2.7E-27 5.9E-32 217.3 15.6 132 1-134 6-182 (190)
107 PRK14273 phosphate ABC transpo 99.9 1.5E-27 3.3E-32 228.7 14.5 158 2-172 22-230 (254)
108 PRK13540 cytochrome c biogenes 99.9 3E-27 6.5E-32 218.9 15.8 131 2-134 16-182 (200)
109 cd03246 ABCC_Protease_Secretio 99.9 3.5E-28 7.6E-33 220.2 9.1 126 2-134 17-151 (173)
110 PRK13646 cbiO cobalt transport 99.9 1.3E-27 2.9E-32 233.3 13.8 119 2-123 22-184 (286)
111 TIGR03005 ectoine_ehuA ectoine 99.9 1.6E-27 3.5E-32 228.3 14.1 156 2-171 15-227 (252)
112 TIGR03411 urea_trans_UrtD urea 99.9 1.4E-27 3E-32 227.2 13.5 157 2-172 17-223 (242)
113 PRK11247 ssuB aliphatic sulfon 99.9 1.3E-27 2.7E-32 230.0 13.3 153 2-169 27-212 (257)
114 PRK11124 artP arginine transpo 99.9 1.9E-27 4.1E-32 226.4 14.3 155 2-170 17-220 (242)
115 PRK13651 cobalt transporter AT 99.9 2.1E-27 4.6E-32 233.8 14.8 120 2-123 22-204 (305)
116 PRK14268 phosphate ABC transpo 99.9 2.1E-27 4.5E-32 228.5 14.4 157 2-171 27-233 (258)
117 cd03235 ABC_Metallic_Cations A 99.9 4.7E-28 1E-32 226.2 9.5 130 2-134 14-187 (213)
118 PRK13649 cbiO cobalt transport 99.9 2.9E-27 6.4E-32 230.1 15.4 119 2-123 22-184 (280)
119 PRK13644 cbiO cobalt transport 99.9 1.8E-27 3.8E-32 231.1 13.6 154 2-170 17-214 (274)
120 PRK10619 histidine/lysine/argi 99.9 2.5E-27 5.4E-32 227.7 14.4 156 2-171 20-232 (257)
121 TIGR03608 L_ocin_972_ABC putat 99.9 2.8E-27 6E-32 219.6 14.1 131 2-134 13-189 (206)
122 PRK15079 oligopeptide ABC tran 99.9 2.3E-27 4.9E-32 236.0 14.4 120 2-123 36-200 (331)
123 PRK13636 cbiO cobalt transport 99.9 2.3E-27 4.9E-32 231.4 14.0 120 2-123 21-180 (283)
124 PRK10584 putative ABC transpor 99.9 1.1E-27 2.5E-32 225.8 11.6 131 2-134 25-202 (228)
125 TIGR02211 LolD_lipo_ex lipopro 99.9 2.9E-27 6.4E-32 221.9 14.0 131 2-134 20-197 (221)
126 cd03247 ABCC_cytochrome_bd The 99.9 9.2E-28 2E-32 218.3 10.2 119 2-124 17-138 (178)
127 TIGR03415 ABC_choXWV_ATP choli 99.9 2.2E-27 4.9E-32 239.4 14.1 120 2-123 39-203 (382)
128 PRK13641 cbiO cobalt transport 99.9 2.8E-27 6E-32 231.2 14.2 155 2-170 22-224 (287)
129 TIGR01184 ntrCD nitrate transp 99.9 3.1E-27 6.7E-32 223.6 13.9 152 3-169 1-193 (230)
130 PRK13639 cbiO cobalt transport 99.9 3.4E-27 7.3E-32 229.2 14.5 120 2-123 17-176 (275)
131 PRK13638 cbiO cobalt transport 99.9 4.4E-27 9.5E-32 227.8 15.1 120 2-123 16-175 (271)
132 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.2E-27 2.6E-32 223.0 10.7 152 4-169 15-207 (211)
133 PRK11144 modC molybdate transp 99.9 2.7E-27 5.9E-32 237.5 14.0 117 5-123 16-167 (352)
134 PRK11300 livG leucine/isoleuci 99.9 1.4E-27 3E-32 229.0 11.3 156 2-171 20-234 (255)
135 COG2274 SunT ABC-type bacterio 99.9 7.4E-28 1.6E-32 258.6 10.5 160 2-177 488-693 (709)
136 PRK14241 phosphate transporter 99.9 4E-27 8.7E-32 226.4 14.4 152 2-165 19-221 (258)
137 PRK14272 phosphate ABC transpo 99.9 5.3E-27 1.1E-31 224.5 15.0 158 2-171 19-227 (252)
138 TIGR02769 nickel_nikE nickel i 99.9 3.7E-27 8E-32 227.6 13.9 157 2-172 26-232 (265)
139 PRK14242 phosphate transporter 99.9 4.4E-27 9.6E-32 225.3 14.4 157 2-171 21-228 (253)
140 cd03228 ABCC_MRP_Like The MRP 99.9 1.1E-27 2.4E-32 216.5 9.6 126 2-134 17-150 (171)
141 PRK14245 phosphate ABC transpo 99.9 4.1E-27 9E-32 225.2 14.1 157 2-171 18-225 (250)
142 PRK14256 phosphate ABC transpo 99.9 5.2E-27 1.1E-31 224.8 14.7 158 2-171 19-227 (252)
143 PRK13548 hmuV hemin importer A 99.9 1.8E-27 3.9E-32 229.0 11.5 155 2-170 17-220 (258)
144 TIGR02142 modC_ABC molybdenum 99.9 4.5E-27 9.8E-32 236.1 14.9 117 5-123 15-170 (354)
145 TIGR00968 3a0106s01 sulfate AB 99.9 4.7E-27 1E-31 223.2 14.2 156 2-171 15-211 (237)
146 PRK13640 cbiO cobalt transport 99.9 4E-27 8.7E-32 229.5 14.0 122 2-123 22-182 (282)
147 PRK13652 cbiO cobalt transport 99.9 6.9E-27 1.5E-31 227.3 15.5 120 2-123 19-176 (277)
148 PRK13633 cobalt transporter AT 99.9 4.9E-27 1.1E-31 228.6 14.3 120 2-123 25-183 (280)
149 PRK13632 cbiO cobalt transport 99.9 4E-27 8.7E-32 228.2 13.6 154 2-170 24-221 (271)
150 cd03300 ABC_PotA_N PotA is an 99.9 5.8E-27 1.3E-31 221.8 14.4 156 2-171 15-211 (232)
151 COG1122 CbiO ABC-type cobalt t 99.9 3.2E-27 6.9E-32 223.3 12.5 158 2-173 19-221 (235)
152 PRK14239 phosphate transporter 99.9 5.4E-27 1.2E-31 224.5 14.2 157 2-171 20-227 (252)
153 PRK14269 phosphate ABC transpo 99.9 5.5E-27 1.2E-31 223.9 14.2 158 2-172 17-222 (246)
154 PRK14240 phosphate transporter 99.9 6.4E-27 1.4E-31 223.8 14.7 157 2-171 18-225 (250)
155 PRK14262 phosphate ABC transpo 99.9 5.9E-27 1.3E-31 224.0 14.4 157 2-171 18-225 (250)
156 TIGR01277 thiQ thiamine ABC tr 99.9 7.4E-27 1.6E-31 218.2 14.7 155 2-170 13-208 (213)
157 PRK14270 phosphate ABC transpo 99.9 5.5E-27 1.2E-31 224.5 14.1 157 2-171 19-226 (251)
158 cd03267 ABC_NatA_like Similar 99.9 6.1E-27 1.3E-31 222.4 14.3 131 2-134 36-209 (236)
159 PRK13543 cytochrome c biogenes 99.9 5.3E-27 1.1E-31 219.6 13.5 131 2-134 26-192 (214)
160 PRK11231 fecE iron-dicitrate t 99.9 1.3E-27 2.9E-32 229.3 9.7 155 2-170 17-217 (255)
161 cd03299 ABC_ModC_like Archeal 99.9 7.5E-27 1.6E-31 221.6 14.7 157 2-172 14-211 (235)
162 PRK14253 phosphate ABC transpo 99.9 6E-27 1.3E-31 223.9 14.1 157 2-171 18-224 (249)
163 TIGR01189 ccmA heme ABC export 99.9 1.3E-26 2.7E-31 214.3 15.7 131 2-134 15-182 (198)
164 TIGR01978 sufC FeS assembly AT 99.9 6.5E-27 1.4E-31 222.5 14.1 133 2-134 15-199 (243)
165 TIGR02770 nickel_nikD nickel i 99.9 7E-27 1.5E-31 221.0 14.2 158 2-171 1-206 (230)
166 KOG0058 Peptide exporter, ABC 99.9 1.2E-27 2.5E-32 250.0 9.6 158 1-174 482-685 (716)
167 PRK10744 pstB phosphate transp 99.9 6.8E-27 1.5E-31 225.1 14.1 157 2-171 28-235 (260)
168 PRK13642 cbiO cobalt transport 99.9 7.7E-27 1.7E-31 226.9 14.6 120 2-123 22-179 (277)
169 PRK11174 cysteine/glutathione 99.9 2.2E-27 4.7E-32 253.3 11.7 159 2-177 365-569 (588)
170 cd03252 ABCC_Hemolysin The ABC 99.9 3.5E-27 7.5E-32 223.8 11.8 155 2-172 17-217 (237)
171 PRK14235 phosphate transporter 99.9 8E-27 1.7E-31 225.6 14.5 157 2-171 34-242 (267)
172 PRK10771 thiQ thiamine transpo 99.9 6.4E-27 1.4E-31 221.5 13.5 154 4-171 16-210 (232)
173 PRK14261 phosphate ABC transpo 99.9 8.2E-27 1.8E-31 223.5 14.4 157 2-171 21-228 (253)
174 cd03231 ABC_CcmA_heme_exporter 99.9 1.2E-26 2.5E-31 215.2 14.8 131 2-134 15-180 (201)
175 PRK14250 phosphate ABC transpo 99.9 5.5E-27 1.2E-31 223.3 12.8 155 2-171 18-212 (241)
176 PRK10575 iron-hydroxamate tran 99.9 1.9E-27 4.1E-32 229.7 9.7 155 2-170 26-227 (265)
177 PRK10253 iron-enterobactin tra 99.9 4.6E-27 1E-31 227.0 12.4 158 2-173 22-226 (265)
178 TIGR03873 F420-0_ABC_ATP propo 99.9 6.4E-27 1.4E-31 224.8 13.3 159 2-174 16-220 (256)
179 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.7E-27 5.9E-32 224.6 10.6 154 2-171 18-217 (238)
180 PRK09984 phosphonate/organopho 99.9 6.8E-27 1.5E-31 225.3 13.4 159 2-172 19-234 (262)
181 PRK14274 phosphate ABC transpo 99.9 8.5E-27 1.8E-31 224.3 14.0 157 2-171 27-234 (259)
182 PRK11308 dppF dipeptide transp 99.9 9E-27 1.9E-31 231.5 14.5 120 2-123 30-193 (327)
183 PRK11248 tauB taurine transpor 99.9 1.1E-26 2.5E-31 223.1 14.6 130 2-134 16-184 (255)
184 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.2E-27 7E-32 256.3 12.2 159 2-176 468-669 (686)
185 PRK11022 dppD dipeptide transp 99.9 1.1E-26 2.3E-31 230.8 14.9 158 2-171 22-234 (326)
186 PRK13645 cbiO cobalt transport 99.9 8.3E-27 1.8E-31 228.0 13.8 155 2-170 26-230 (289)
187 cd03217 ABC_FeS_Assembly ABC-t 99.9 8.4E-27 1.8E-31 216.0 13.1 158 2-171 15-185 (200)
188 PRK14249 phosphate ABC transpo 99.9 1.2E-26 2.7E-31 222.1 14.6 157 2-171 19-226 (251)
189 PRK14259 phosphate ABC transpo 99.9 8.9E-27 1.9E-31 225.6 13.7 122 2-124 28-194 (269)
190 PRK13539 cytochrome c biogenes 99.9 1.9E-26 4.1E-31 214.7 15.3 131 2-134 17-182 (207)
191 PRK14237 phosphate transporter 99.9 1.2E-26 2.5E-31 224.4 14.4 158 2-172 35-243 (267)
192 cd03254 ABCC_Glucan_exporter_l 99.9 4E-27 8.7E-32 222.1 10.9 154 2-171 18-217 (229)
193 PRK09473 oppD oligopeptide tra 99.9 1.1E-26 2.4E-31 231.1 14.4 122 2-123 31-200 (330)
194 PRK13538 cytochrome c biogenes 99.9 1.4E-26 2.9E-31 215.1 14.1 131 2-134 16-184 (204)
195 TIGR02982 heterocyst_DevA ABC 99.9 5.5E-27 1.2E-31 220.2 11.3 131 2-134 20-197 (220)
196 PRK14260 phosphate ABC transpo 99.9 1.2E-26 2.6E-31 223.2 14.0 121 2-123 22-189 (259)
197 PRK13549 xylose transporter AT 99.9 7.5E-27 1.6E-31 245.1 13.6 157 2-170 20-222 (506)
198 PRK14255 phosphate ABC transpo 99.9 1.5E-26 3.2E-31 221.6 14.5 157 2-171 20-227 (252)
199 PRK15112 antimicrobial peptide 99.9 1.1E-26 2.4E-31 224.6 13.7 156 2-171 28-230 (267)
200 cd03251 ABCC_MsbA MsbA is an e 99.9 5.7E-27 1.2E-31 221.8 11.4 155 2-172 17-217 (234)
201 PRK14244 phosphate ABC transpo 99.9 1.4E-26 3E-31 221.7 14.0 156 2-170 20-227 (251)
202 PRK14263 phosphate ABC transpo 99.9 1.8E-26 3.8E-31 222.5 14.6 150 2-164 23-221 (261)
203 PRK14248 phosphate ABC transpo 99.9 1.8E-26 3.8E-31 223.2 14.3 157 2-171 36-243 (268)
204 COG4525 TauB ABC-type taurine 99.9 1.4E-26 3.1E-31 208.0 12.5 131 2-135 20-189 (259)
205 PRK14236 phosphate transporter 99.9 1.9E-26 4E-31 223.6 14.2 157 2-171 40-247 (272)
206 PRK10790 putative multidrug tr 99.9 5.6E-27 1.2E-31 250.4 11.5 159 2-176 356-559 (592)
207 TIGR02324 CP_lyasePhnL phospho 99.9 1.1E-26 2.5E-31 218.4 11.8 132 2-135 23-205 (224)
208 PRK13541 cytochrome c biogenes 99.9 6.2E-26 1.4E-30 209.2 16.2 130 3-134 16-178 (195)
209 cd03244 ABCC_MRP_domain2 Domai 99.9 8.5E-27 1.8E-31 218.7 10.6 119 2-123 19-178 (221)
210 COG4988 CydD ABC-type transpor 99.9 7.3E-27 1.6E-31 239.7 10.9 161 1-177 335-540 (559)
211 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 6.8E-27 1.5E-31 254.7 11.1 158 2-175 494-695 (710)
212 PRK14271 phosphate ABC transpo 99.9 3E-26 6.5E-31 222.7 14.3 157 2-171 36-242 (276)
213 PRK14251 phosphate ABC transpo 99.9 3.3E-26 7.2E-31 219.0 14.4 157 2-171 19-226 (251)
214 TIGR01193 bacteriocin_ABC ABC- 99.9 7.8E-27 1.7E-31 254.2 11.3 159 1-175 488-692 (708)
215 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.3E-26 2.8E-31 215.6 11.1 152 2-169 23-201 (207)
216 PRK03695 vitamin B12-transport 99.9 2.2E-26 4.7E-31 220.2 13.0 156 2-172 11-214 (248)
217 PRK14275 phosphate ABC transpo 99.9 3.2E-26 7E-31 223.6 14.3 158 2-172 54-262 (286)
218 PRK14238 phosphate transporter 99.9 3.4E-26 7.5E-31 221.7 14.3 157 2-171 39-246 (271)
219 PRK11176 lipid transporter ATP 99.9 1E-26 2.2E-31 247.9 11.4 159 2-176 358-563 (582)
220 PRK14265 phosphate ABC transpo 99.9 3.3E-26 7.2E-31 222.1 14.0 151 2-165 35-234 (274)
221 PRK14254 phosphate ABC transpo 99.9 4.6E-26 1E-30 222.4 15.1 121 2-123 54-219 (285)
222 cd03253 ABCC_ATM1_transporter 99.9 1.6E-26 3.5E-31 219.0 11.4 155 2-172 16-216 (236)
223 PRK11701 phnK phosphonate C-P 99.9 3.4E-26 7.4E-31 220.0 13.9 156 2-171 21-232 (258)
224 TIGR00958 3a01208 Conjugate Tr 99.9 9.9E-27 2.2E-31 253.3 11.3 159 2-176 496-698 (711)
225 cd03297 ABC_ModC_molybdenum_tr 99.9 4E-26 8.6E-31 213.4 13.7 127 5-134 16-187 (214)
226 PRK14243 phosphate transporter 99.9 3.3E-26 7.1E-31 221.0 13.4 122 2-124 25-191 (264)
227 PRK13547 hmuV hemin importer A 99.9 2.5E-26 5.3E-31 222.8 12.5 159 2-172 16-236 (272)
228 PRK14266 phosphate ABC transpo 99.9 4.1E-26 9E-31 218.2 13.6 156 2-170 18-224 (250)
229 cd03223 ABCD_peroxisomal_ALDP 99.9 4.1E-26 8.9E-31 205.5 12.7 113 2-124 16-131 (166)
230 PRK14258 phosphate ABC transpo 99.9 5.6E-26 1.2E-30 218.9 14.4 152 2-166 22-226 (261)
231 cd03245 ABCC_bacteriocin_expor 99.9 1.9E-26 4.2E-31 216.2 10.9 120 2-124 19-180 (220)
232 PRK10418 nikD nickel transport 99.9 5.8E-26 1.3E-30 217.9 14.5 158 2-171 18-221 (254)
233 PRK10419 nikE nickel transport 99.9 4.4E-26 9.4E-31 220.6 13.6 156 2-171 27-232 (268)
234 PRK14257 phosphate ABC transpo 99.9 5.8E-26 1.2E-30 225.8 14.7 159 2-173 97-306 (329)
235 PRK10762 D-ribose transporter 99.9 2.7E-26 5.8E-31 240.6 13.0 155 2-170 19-220 (501)
236 PRK14246 phosphate ABC transpo 99.9 6.1E-26 1.3E-30 218.3 14.5 157 2-170 25-231 (257)
237 PRK15439 autoinducer 2 ABC tra 99.9 2.8E-26 6.1E-31 241.0 13.1 155 2-170 26-219 (510)
238 PRK15093 antimicrobial peptide 99.9 6.6E-26 1.4E-30 225.6 15.1 122 2-123 22-197 (330)
239 TIGR03375 type_I_sec_LssB type 99.9 1.4E-26 3E-31 251.7 11.1 158 2-175 480-683 (694)
240 COG4619 ABC-type uncharacteriz 99.9 5.4E-27 1.2E-31 206.1 6.3 152 1-167 17-210 (223)
241 PRK10247 putative ABC transpor 99.9 5.2E-26 1.1E-30 214.4 13.5 130 2-134 22-193 (225)
242 KOG0057 Mitochondrial Fe/S clu 99.9 1.2E-26 2.5E-31 235.5 9.6 119 1-123 366-526 (591)
243 TIGR02868 CydC thiol reductant 99.9 3.5E-26 7.7E-31 241.1 12.9 130 2-134 350-524 (529)
244 PRK14252 phosphate ABC transpo 99.9 8E-26 1.7E-30 218.3 14.0 157 2-171 31-240 (265)
245 cd03250 ABCC_MRP_domain1 Domai 99.9 1.8E-26 3.9E-31 214.1 8.9 121 2-134 20-183 (204)
246 PRK09700 D-allose transporter 99.9 6.4E-26 1.4E-30 238.3 13.9 155 2-170 20-224 (510)
247 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.6E-26 7.8E-31 221.9 11.0 156 2-174 19-219 (275)
248 TIGR02633 xylG D-xylose ABC tr 99.9 8.2E-26 1.8E-30 236.9 14.5 157 2-170 16-220 (500)
249 PRK11160 cysteine/glutathione 99.9 3.4E-26 7.4E-31 243.6 11.5 159 2-176 355-558 (574)
250 COG4559 ABC-type hemin transpo 99.9 3.2E-26 7E-31 208.2 9.6 175 1-189 15-239 (259)
251 PRK15177 Vi polysaccharide exp 99.9 9.5E-26 2.1E-30 211.1 13.2 149 1-172 1-184 (213)
252 TIGR02323 CP_lyasePhnK phospho 99.9 1.1E-25 2.5E-30 215.5 14.0 156 2-171 18-229 (253)
253 COG4175 ProV ABC-type proline/ 99.9 2.2E-26 4.8E-31 220.0 8.8 137 3-141 44-253 (386)
254 cd03288 ABCC_SUR2 The SUR doma 99.9 3.4E-26 7.4E-31 220.0 10.2 157 2-174 36-237 (257)
255 KOG0055 Multidrug/pheromone ex 99.9 2.2E-26 4.8E-31 252.4 9.6 139 1-142 367-576 (1228)
256 COG1132 MdlB ABC-type multidru 99.9 3.4E-26 7.4E-31 243.3 10.7 161 1-177 343-549 (567)
257 PRK10982 galactose/methyl gala 99.9 8.6E-26 1.9E-30 236.2 13.4 156 2-171 13-214 (491)
258 COG4181 Predicted ABC-type tra 99.9 8.8E-26 1.9E-30 199.0 10.9 155 1-170 24-225 (228)
259 COG1129 MglA ABC-type sugar tr 99.9 4.2E-26 9E-31 233.3 10.1 158 1-172 22-226 (500)
260 cd03248 ABCC_TAP TAP, the Tran 99.9 3.6E-26 7.8E-31 215.3 8.7 120 2-124 29-190 (226)
261 PRK14264 phosphate ABC transpo 99.9 2.2E-25 4.7E-30 219.7 14.6 122 2-124 60-240 (305)
262 PRK10261 glutathione transport 99.9 1.5E-25 3.1E-30 240.7 14.5 121 2-124 339-503 (623)
263 PRK13657 cyclic beta-1,2-gluca 99.9 6.9E-26 1.5E-30 241.9 11.9 158 2-175 350-553 (588)
264 PRK11288 araG L-arabinose tran 99.9 4.9E-26 1.1E-30 238.6 10.5 155 2-170 19-219 (501)
265 TIGR01842 type_I_sec_PrtD type 99.9 7.8E-26 1.7E-30 239.4 12.0 157 2-174 333-536 (544)
266 cd03216 ABC_Carb_Monos_I This 99.9 4.1E-26 8.9E-31 204.8 7.9 113 2-134 15-137 (163)
267 TIGR01257 rim_protein retinal- 99.9 1.6E-25 3.5E-30 260.1 14.9 142 2-145 1954-2162(2272)
268 PRK10789 putative multidrug tr 99.9 7.8E-26 1.7E-30 240.6 11.3 158 2-175 330-533 (569)
269 CHL00131 ycf16 sulfate ABC tra 99.9 4.2E-25 9.1E-30 211.4 15.1 157 2-170 22-231 (252)
270 COG3845 ABC-type uncharacteriz 99.9 5E-26 1.1E-30 228.9 8.8 157 2-172 19-221 (501)
271 COG4148 ModC ABC-type molybdat 99.9 3.5E-26 7.7E-31 215.3 7.2 117 5-123 16-167 (352)
272 TIGR01846 type_I_sec_HlyB type 99.9 8.1E-26 1.8E-30 245.7 11.1 159 2-176 472-676 (694)
273 PRK15056 manganese/iron transp 99.9 7.2E-26 1.6E-30 219.5 9.6 131 2-134 22-197 (272)
274 PRK09580 sufC cysteine desulfu 99.9 4.6E-25 1E-29 210.5 14.7 133 2-134 16-200 (248)
275 PRK15134 microcin C ABC transp 99.9 2.6E-25 5.6E-30 234.7 14.0 155 2-171 301-506 (529)
276 TIGR02203 MsbA_lipidA lipid A 99.9 1.2E-25 2.6E-30 239.1 11.0 159 2-176 347-552 (571)
277 cd03290 ABCC_SUR1_N The SUR do 99.9 2.7E-25 5.9E-30 208.3 12.0 119 2-123 16-179 (218)
278 TIGR01257 rim_protein retinal- 99.9 3.1E-25 6.7E-30 257.8 15.0 141 2-144 945-1151(2272)
279 PRK09700 D-allose transporter 99.9 1E-25 2.2E-30 236.8 9.8 155 2-170 278-488 (510)
280 PRK10261 glutathione transport 99.9 3E-25 6.4E-30 238.3 13.5 120 2-123 31-207 (623)
281 TIGR03269 met_CoM_red_A2 methy 99.9 4.1E-25 8.8E-30 232.7 14.2 156 2-171 299-508 (520)
282 COG0396 sufC Cysteine desulfur 99.9 5.6E-25 1.2E-29 202.6 13.2 150 1-151 18-242 (251)
283 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.9E-25 1.1E-29 207.8 13.0 123 2-134 37-197 (224)
284 PRK09544 znuC high-affinity zi 99.9 1.5E-25 3.3E-30 214.8 9.6 114 2-124 19-160 (251)
285 PRK13546 teichoic acids export 99.9 9.4E-25 2E-29 210.9 15.0 149 2-173 39-225 (264)
286 cd03291 ABCC_CFTR1 The CFTR su 99.9 3.9E-25 8.5E-30 215.3 12.4 146 1-171 51-238 (282)
287 TIGR02204 MsbA_rel ABC transpo 99.9 1.7E-25 3.8E-30 238.1 10.8 157 2-174 355-557 (576)
288 TIGR01192 chvA glucan exporter 99.9 2.9E-25 6.3E-30 236.9 12.0 158 2-175 350-553 (585)
289 TIGR03771 anch_rpt_ABC anchore 99.9 2.3E-25 4.9E-30 209.8 9.8 147 8-170 1-191 (223)
290 PRK13549 xylose transporter AT 99.9 4.9E-25 1.1E-29 231.4 13.2 157 2-171 277-485 (506)
291 PRK15134 microcin C ABC transp 99.9 7.7E-25 1.7E-29 231.1 14.7 156 2-169 24-235 (529)
292 COG0444 DppD ABC-type dipeptid 99.9 6.1E-25 1.3E-29 212.2 12.4 122 2-123 20-192 (316)
293 cd03214 ABC_Iron-Siderophores_ 99.9 1.2E-25 2.6E-30 204.8 6.5 112 2-124 14-137 (180)
294 PRK10762 D-ribose transporter 99.9 8.4E-25 1.8E-29 229.3 13.6 156 2-171 267-475 (501)
295 TIGR02633 xylG D-xylose ABC tr 99.9 2.9E-25 6.3E-30 232.7 10.1 156 2-170 275-482 (500)
296 PRK11288 araG L-arabinose tran 99.9 5.3E-25 1.2E-29 230.8 11.9 156 2-171 268-476 (501)
297 COG4987 CydC ABC-type transpor 99.9 1.5E-25 3.3E-30 227.1 7.3 131 1-134 352-528 (573)
298 TIGR03269 met_CoM_red_A2 methy 99.9 1.4E-24 3E-29 228.7 14.7 157 2-170 15-248 (520)
299 PRK15439 autoinducer 2 ABC tra 99.9 5E-25 1.1E-29 231.5 11.2 156 2-171 278-483 (510)
300 TIGR02857 CydD thiol reductant 99.9 6.1E-25 1.3E-29 231.8 11.7 130 2-134 337-512 (529)
301 COG1123 ATPase components of v 99.9 1.5E-24 3.2E-29 223.4 13.1 157 2-172 306-511 (539)
302 PLN03232 ABC transporter C fam 99.9 4.7E-25 1E-29 255.9 10.2 119 2-123 1251-1410(1495)
303 PLN03130 ABC transporter C fam 99.9 6.2E-25 1.3E-29 255.5 11.0 159 2-165 1254-1486(1622)
304 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.1E-24 4.7E-29 206.3 12.4 142 2-165 9-190 (246)
305 COG4161 ArtP ABC-type arginine 99.9 1.1E-24 2.3E-29 190.5 8.9 121 1-123 16-180 (242)
306 PRK10938 putative molybdenum t 99.9 1.6E-24 3.4E-29 226.6 11.8 156 2-171 18-215 (490)
307 PRK15064 ABC transporter ATP-b 99.9 5E-24 1.1E-28 224.9 15.7 147 2-169 16-230 (530)
308 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 6.6E-25 1.4E-29 193.1 7.3 96 2-124 15-110 (144)
309 COG4598 HisP ABC-type histidin 99.9 7.6E-25 1.6E-29 194.5 7.4 159 1-173 20-234 (256)
310 PRK11819 putative ABC transpor 99.9 4.5E-24 9.7E-29 226.5 14.4 146 2-169 22-238 (556)
311 PTZ00265 multidrug resistance 99.9 1.4E-24 3E-29 250.5 10.6 152 1-166 1182-1433(1466)
312 COG1123 ATPase components of v 99.9 5.9E-24 1.3E-28 219.0 13.6 141 2-142 24-244 (539)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 6.8E-24 1.5E-28 225.0 14.3 146 2-169 20-236 (552)
314 PRK10535 macrolide transporter 99.9 9E-24 1.9E-28 227.7 15.1 120 2-123 23-183 (648)
315 TIGR01187 potA spermidine/putr 99.9 5.3E-24 1.1E-28 211.6 12.3 104 18-123 1-139 (325)
316 PF00005 ABC_tran: ABC transpo 99.9 2.3E-24 4.9E-29 186.9 8.4 109 3-113 1-137 (137)
317 PRK13545 tagH teichoic acids e 99.9 1.1E-23 2.3E-28 217.8 14.6 111 2-123 39-182 (549)
318 KOG0055 Multidrug/pheromone ex 99.9 2E-24 4.3E-29 237.2 9.5 139 1-142 1004-1213(1228)
319 COG4136 ABC-type uncharacteriz 99.9 2.2E-24 4.7E-29 186.6 7.6 122 2-123 17-173 (213)
320 TIGR00957 MRP_assoc_pro multi 99.9 2.7E-24 5.7E-29 250.0 10.8 157 2-174 1301-1502(1522)
321 PTZ00243 ABC transporter; Prov 99.9 4E-24 8.7E-29 248.3 11.1 119 2-123 1325-1485(1560)
322 PRK15064 ABC transporter ATP-b 99.9 1.5E-23 3.3E-28 221.3 13.7 147 2-169 334-513 (530)
323 COG1119 ModF ABC-type molybden 99.9 2.8E-24 6.1E-29 200.0 6.6 121 1-123 45-210 (257)
324 COG4586 ABC-type uncharacteriz 99.9 4.5E-24 9.8E-29 200.7 7.8 141 2-144 39-248 (325)
325 PRK10982 galactose/methyl gala 99.9 1.1E-23 2.3E-28 220.4 11.3 155 2-170 263-470 (491)
326 cd03222 ABC_RNaseL_inhibitor T 99.9 9.1E-24 2E-28 192.0 9.0 96 2-123 15-110 (177)
327 TIGR01271 CFTR_protein cystic 99.9 1.1E-23 2.3E-28 244.4 11.5 118 2-123 1234-1392(1490)
328 PRK10522 multidrug transporter 99.9 1.4E-23 3E-28 222.4 11.1 154 2-171 338-529 (547)
329 KOG0056 Heavy metal exporter H 99.9 2.5E-24 5.5E-29 215.0 4.4 120 1-123 552-713 (790)
330 COG4172 ABC-type uncharacteriz 99.9 2.8E-23 6E-28 204.1 11.0 119 2-123 302-465 (534)
331 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.3E-23 2.8E-28 187.1 7.9 102 2-123 14-119 (157)
332 PRK11819 putative ABC transpor 99.9 4.1E-23 8.9E-28 219.2 13.2 143 2-166 339-517 (556)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4E-23 8.8E-28 219.1 13.0 143 2-166 337-515 (552)
334 PTZ00265 multidrug resistance 99.9 2E-23 4.3E-28 241.0 10.8 119 2-123 400-618 (1466)
335 COG4133 CcmA ABC-type transpor 99.9 6.6E-23 1.4E-27 183.6 11.6 120 2-123 17-169 (209)
336 COG4674 Uncharacterized ABC-ty 99.9 2.5E-24 5.3E-29 193.6 2.1 160 1-174 19-229 (249)
337 COG1101 PhnK ABC-type uncharac 99.9 3.5E-23 7.5E-28 188.8 8.3 121 2-124 21-188 (263)
338 PRK10938 putative molybdenum t 99.9 5E-23 1.1E-27 215.3 10.2 155 2-169 275-481 (490)
339 PRK13409 putative ATPase RIL; 99.9 7.8E-23 1.7E-27 217.7 10.8 122 2-134 354-509 (590)
340 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.1E-22 2.4E-27 215.8 11.9 153 2-170 357-549 (555)
341 KOG0059 Lipid exporter ABCA1 a 99.9 9.1E-23 2E-27 226.2 11.7 120 2-123 580-737 (885)
342 cd03238 ABC_UvrA The excision 99.9 4.8E-22 1E-26 180.6 13.6 116 2-134 10-144 (176)
343 cd03236 ABC_RNaseL_inhibitor_d 99.9 6E-23 1.3E-27 197.3 7.5 129 2-134 16-194 (255)
344 COG4618 ArpD ABC-type protease 99.9 1.5E-22 3.3E-27 203.9 10.3 141 1-144 350-562 (580)
345 COG4604 CeuD ABC-type enteroch 99.9 3.2E-23 7E-28 186.7 4.6 173 2-188 16-233 (252)
346 TIGR00954 3a01203 Peroxysomal 99.9 4E-22 8.7E-27 215.3 13.9 123 2-134 467-634 (659)
347 PRK11147 ABC transporter ATPas 99.9 1.4E-22 3E-27 218.2 10.2 114 2-124 334-480 (635)
348 COG4608 AppF ABC-type oligopep 99.9 2.6E-22 5.6E-27 190.2 10.7 107 2-124 28-149 (268)
349 PLN03232 ABC transporter C fam 99.9 2.2E-22 4.8E-27 233.8 10.6 111 2-123 632-779 (1495)
350 COG4167 SapF ABC-type antimicr 99.9 5.8E-22 1.3E-26 176.7 10.6 120 2-123 28-188 (267)
351 TIGR01271 CFTR_protein cystic 99.9 5E-22 1.1E-26 230.6 12.9 110 2-123 441-587 (1490)
352 PRK10636 putative ABC transpor 99.9 4.6E-22 9.9E-27 214.1 11.8 113 2-123 327-469 (638)
353 PLN03130 ABC transporter C fam 99.9 4.3E-22 9.3E-27 232.0 10.6 110 2-123 632-779 (1622)
354 PLN03073 ABC transporter F fam 99.9 1.2E-21 2.6E-26 212.4 13.1 144 2-169 524-702 (718)
355 TIGR00957 MRP_assoc_pro multi 99.9 8.3E-22 1.8E-26 229.3 11.7 110 2-123 653-799 (1522)
356 COG5265 ATM1 ABC-type transpor 99.9 2.8E-22 6E-27 198.1 5.5 120 1-123 277-438 (497)
357 PTZ00243 ABC transporter; Prov 99.8 2.9E-21 6.2E-26 224.7 11.9 110 2-123 675-821 (1560)
358 COG1134 TagH ABC-type polysacc 99.8 6.6E-21 1.4E-25 177.6 11.6 135 2-146 42-240 (249)
359 COG4107 PhnK ABC-type phosphon 99.8 6.1E-21 1.3E-25 168.9 10.3 120 3-124 22-191 (258)
360 PRK10636 putative ABC transpor 99.8 5.3E-21 1.1E-25 205.9 11.6 113 2-124 16-189 (638)
361 PRK11147 ABC transporter ATPas 99.8 7.1E-21 1.5E-25 205.0 12.1 146 2-169 18-231 (635)
362 PRK13409 putative ATPase RIL; 99.8 1.2E-20 2.7E-25 200.8 10.2 120 2-124 89-252 (590)
363 COG0488 Uup ATPase components 99.8 1.7E-19 3.8E-24 188.4 15.2 146 1-168 17-227 (530)
364 KOG0054 Multidrug resistance-a 99.8 3.3E-20 7.1E-25 208.2 8.2 119 2-123 1155-1314(1381)
365 COG4778 PhnL ABC-type phosphon 99.8 4.3E-20 9.4E-25 163.0 6.3 151 2-166 26-227 (235)
366 KOG0054 Multidrug resistance-a 99.8 2E-19 4.3E-24 201.9 9.8 128 2-141 536-730 (1381)
367 COG4172 ABC-type uncharacteriz 99.8 3.8E-19 8.3E-24 175.2 10.5 139 2-140 25-245 (534)
368 cd03278 ABC_SMC_barmotin Barmo 99.8 1.2E-18 2.6E-23 161.2 9.6 120 4-124 14-157 (197)
369 PLN03073 ABC transporter F fam 99.8 5.1E-19 1.1E-23 192.0 6.6 156 2-169 192-419 (718)
370 COG0488 Uup ATPase components 99.8 1E-17 2.2E-22 175.3 14.8 126 2-136 337-494 (530)
371 cd03270 ABC_UvrA_I The excisio 99.7 8.7E-18 1.9E-22 158.7 11.8 132 1-135 9-195 (226)
372 cd03271 ABC_UvrA_II The excisi 99.7 1.1E-17 2.5E-22 160.8 11.0 133 2-134 10-227 (261)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.7 2.5E-17 5.5E-22 156.7 10.1 124 13-136 23-218 (243)
374 COG1129 MglA ABC-type sugar tr 99.7 1.8E-17 4E-22 170.0 9.0 155 3-171 275-481 (500)
375 COG4138 BtuD ABC-type cobalami 99.7 1.2E-17 2.6E-22 148.2 3.6 172 3-189 15-230 (248)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.3E-17 2.7E-22 156.2 2.0 34 91-124 134-171 (212)
377 COG4178 ABC-type uncharacteriz 99.7 2.7E-16 5.9E-21 164.4 12.1 133 2-144 408-580 (604)
378 COG4615 PvdE ABC-type sideroph 99.7 1.5E-16 3.1E-21 156.6 8.8 154 3-171 339-528 (546)
379 cd03240 ABC_Rad50 The catalyti 99.6 1.9E-16 4.1E-21 147.4 6.2 116 5-123 15-161 (204)
380 cd03279 ABC_sbcCD SbcCD and ot 99.6 4.9E-16 1.1E-20 145.4 8.2 129 5-134 19-188 (213)
381 cd03283 ABC_MutS-like MutS-lik 99.6 5.6E-16 1.2E-20 143.6 3.5 108 2-123 16-126 (199)
382 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2.8E-16 6.1E-21 150.6 1.4 121 13-134 25-224 (251)
383 KOG0927 Predicted transporter 99.5 8.2E-15 1.8E-19 149.2 7.2 122 2-123 90-260 (614)
384 COG1245 Predicted ATPase, RNas 99.5 3.4E-14 7.3E-19 142.3 11.0 105 7-123 361-494 (591)
385 COG3845 ABC-type uncharacteriz 99.5 6.1E-14 1.3E-18 142.0 11.0 158 2-173 273-485 (501)
386 PRK00349 uvrA excinuclease ABC 99.5 1.5E-13 3.3E-18 152.3 12.9 70 91-173 837-920 (943)
387 KOG0927 Predicted transporter 99.5 3.6E-14 7.7E-19 144.6 7.2 124 2-134 405-562 (614)
388 PRK00635 excinuclease ABC subu 99.5 2.2E-13 4.7E-18 157.5 13.0 33 91-123 816-851 (1809)
389 KOG0062 ATPase component of AB 99.5 3.1E-14 6.7E-19 144.3 5.1 122 2-123 95-237 (582)
390 cd03280 ABC_MutS2 MutS2 homolo 99.4 4.9E-13 1.1E-17 123.9 9.5 114 4-136 18-148 (200)
391 TIGR00630 uvra excinuclease AB 99.4 9.4E-13 2E-17 145.8 13.3 68 91-171 835-916 (924)
392 KOG0060 Long-chain acyl-CoA tr 99.4 8.1E-13 1.7E-17 135.8 11.7 134 2-142 450-631 (659)
393 COG4170 SapD ABC-type antimicr 99.4 1.2E-13 2.6E-18 126.1 5.0 124 1-124 21-198 (330)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.4 8.3E-13 1.8E-17 122.4 10.1 118 3-124 12-153 (198)
395 cd00820 PEPCK_HprK Phosphoenol 99.4 3.4E-13 7.3E-18 112.2 5.1 71 2-83 4-78 (107)
396 cd03282 ABC_MSH4_euk MutS4 hom 99.4 4.8E-13 1E-17 124.5 6.4 123 2-136 18-148 (204)
397 cd03243 ABC_MutS_homologs The 99.4 8.9E-13 1.9E-17 122.3 7.5 107 6-123 22-129 (202)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.4 2.4E-12 5.1E-17 120.6 9.8 119 4-124 15-170 (213)
399 KOG2355 Predicted ABC-type tra 99.3 4.5E-12 9.7E-17 115.6 8.8 154 2-171 29-228 (291)
400 cd03275 ABC_SMC1_euk Eukaryoti 99.3 5.4E-12 1.2E-16 120.7 10.0 44 91-134 162-214 (247)
401 KOG0066 eIF2-interacting prote 99.3 1.2E-11 2.6E-16 123.4 9.3 111 2-123 602-743 (807)
402 cd03239 ABC_SMC_head The struc 99.3 1.9E-11 4E-16 111.5 9.3 112 6-123 15-137 (178)
403 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.5E-11 3.1E-16 115.3 8.3 103 7-121 21-127 (213)
404 cd03284 ABC_MutS1 MutS1 homolo 99.2 4.4E-12 9.5E-17 119.1 4.4 106 2-120 20-130 (216)
405 TIGR02858 spore_III_AA stage I 99.2 4E-11 8.8E-16 116.0 8.3 111 14-137 112-227 (270)
406 COG2401 ABC-type ATPase fused 99.2 2.5E-11 5.5E-16 120.6 6.8 115 2-123 398-546 (593)
407 COG1245 Predicted ATPase, RNas 99.2 2.6E-11 5.7E-16 121.8 6.5 113 10-123 97-252 (591)
408 cd03227 ABC_Class2 ABC-type Cl 99.2 2.3E-11 4.9E-16 109.0 5.1 101 8-123 16-120 (162)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.2 1.8E-11 3.8E-16 115.5 4.3 121 2-135 19-149 (222)
410 cd03241 ABC_RecN RecN ATPase i 99.1 4E-10 8.8E-15 109.6 11.4 44 91-134 177-228 (276)
411 COG0178 UvrA Excinuclease ATPa 99.1 9.4E-11 2E-15 124.8 7.0 62 91-165 829-898 (935)
412 TIGR03062 pip_yhgE_Cterm YhgE/ 99.1 1.5E-09 3.4E-14 100.7 13.4 135 268-410 57-208 (208)
413 cd03287 ABC_MSH3_euk MutS3 hom 99.1 4.1E-10 8.8E-15 106.1 8.8 109 2-122 20-130 (222)
414 cd03242 ABC_RecF RecF is a rec 99.1 1E-09 2.2E-14 106.5 11.8 34 91-124 190-232 (270)
415 KOG0064 Peroxisomal long-chain 99.1 2E-10 4.4E-15 117.1 7.0 115 2-126 497-654 (728)
416 PRK00635 excinuclease ABC subu 99.0 3.7E-10 8.1E-15 131.1 8.6 63 91-166 1706-1776(1809)
417 PTZ00132 GTP-binding nuclear p 99.0 2.5E-09 5.5E-14 99.7 11.7 34 91-124 159-197 (215)
418 PF01061 ABC2_membrane: ABC-2 99.0 6.3E-11 1.4E-15 108.5 -0.7 104 267-370 90-210 (210)
419 smart00534 MUTSac ATPase domai 98.9 1.6E-09 3.4E-14 99.3 6.4 94 15-123 1-99 (185)
420 TIGR01069 mutS2 MutS2 family p 98.9 2.2E-09 4.7E-14 117.8 8.2 105 6-123 314-423 (771)
421 KOG0066 eIF2-interacting prote 98.9 2.1E-09 4.6E-14 107.6 6.6 118 3-120 280-448 (807)
422 KOG0062 ATPase component of AB 98.9 4.9E-09 1.1E-13 107.0 8.8 126 2-136 379-537 (582)
423 cd01130 VirB11-like_ATPase Typ 98.9 1.4E-08 3.1E-13 93.0 10.8 106 6-131 18-126 (186)
424 PRK00064 recF recombination pr 98.8 5E-08 1.1E-12 98.6 13.3 32 3-35 14-45 (361)
425 TIGR03238 dnd_assoc_3 dnd syst 98.8 3.3E-09 7.1E-14 108.8 4.4 49 2-54 21-70 (504)
426 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1E-08 2.2E-13 96.5 7.2 111 2-123 19-130 (218)
427 KOG0063 RNAse L inhibitor, ABC 98.8 4.3E-08 9.2E-13 98.3 10.2 104 9-123 363-495 (592)
428 cd01131 PilT Pilus retraction 98.7 7.4E-08 1.6E-12 89.2 10.8 101 15-134 3-104 (198)
429 TIGR01247 drrB daunorubicin re 98.7 2.9E-07 6.4E-12 87.0 13.6 131 268-403 87-234 (236)
430 PRK07196 fliI flagellum-specif 98.7 3.2E-08 6.9E-13 101.5 6.4 84 2-86 145-239 (434)
431 TIGR02788 VirB11 P-type DNA tr 98.6 3.4E-07 7.3E-12 90.6 12.8 106 6-131 137-244 (308)
432 TIGR01420 pilT_fam pilus retra 98.6 2E-07 4.3E-12 93.6 11.1 106 10-134 119-225 (343)
433 PRK07721 fliI flagellum-specif 98.6 8.4E-08 1.8E-12 98.9 7.8 64 2-68 148-223 (438)
434 PRK08533 flagellar accessory p 98.6 3.6E-07 7.8E-12 86.7 10.9 34 6-39 17-51 (230)
435 TIGR00025 Mtu_efflux ABC trans 98.5 1E-06 2.2E-11 83.3 12.9 134 268-407 76-230 (232)
436 PRK06793 fliI flagellum-specif 98.5 5.3E-07 1.1E-11 92.5 9.0 48 2-52 146-193 (432)
437 PRK14079 recF recombination pr 98.4 1.8E-06 3.8E-11 87.0 12.3 34 91-124 270-312 (349)
438 PRK00409 recombination and DNA 98.4 4.9E-07 1.1E-11 99.7 7.4 105 7-123 320-428 (782)
439 TIGR00611 recf recF protein. A 98.4 2.2E-06 4.7E-11 86.8 11.1 46 91-136 282-338 (365)
440 PRK09825 idnK D-gluconate kina 98.4 2.6E-07 5.7E-12 84.0 3.7 67 12-84 2-71 (176)
441 COG3910 Predicted ATPase [Gene 98.4 1.9E-06 4E-11 78.2 8.8 123 14-136 38-185 (233)
442 smart00382 AAA ATPases associa 98.3 1.8E-06 3.8E-11 72.7 7.8 100 12-124 1-100 (148)
443 PRK06995 flhF flagellar biosyn 98.3 1E-06 2.2E-11 91.6 7.4 91 3-111 246-343 (484)
444 PF02463 SMC_N: RecF/RecN/SMC 98.3 4.9E-06 1.1E-10 77.8 10.0 24 101-124 157-180 (220)
445 PF13555 AAA_29: P-loop contai 98.3 1.2E-06 2.6E-11 65.6 4.3 34 4-37 13-47 (62)
446 TIGR01291 nodJ ABC-2 type tran 98.2 2.4E-05 5.3E-10 75.1 14.1 133 268-407 99-249 (253)
447 PRK13695 putative NTPase; Prov 98.2 5.1E-06 1.1E-10 75.1 8.8 44 91-134 85-131 (174)
448 PRK06002 fliI flagellum-specif 98.2 1.7E-06 3.7E-11 89.0 6.1 65 2-69 155-230 (450)
449 TIGR00554 panK_bact pantothena 98.2 5.8E-07 1.3E-11 87.9 2.4 73 14-87 63-138 (290)
450 PRK09270 nucleoside triphospha 98.2 2E-06 4.4E-11 81.3 4.9 75 11-88 31-109 (229)
451 cd02025 PanK Pantothenate kina 98.1 1.2E-06 2.7E-11 82.4 2.2 72 15-87 1-75 (220)
452 PRK10078 ribose 1,5-bisphospho 98.1 3.9E-06 8.4E-11 76.8 5.0 50 13-67 2-55 (186)
453 PRK01889 GTPase RsgA; Reviewed 98.1 3.2E-06 7E-11 85.3 4.8 68 5-74 187-255 (356)
454 PRK10416 signal recognition pa 98.1 4.6E-06 1E-10 82.8 5.8 70 11-82 112-191 (318)
455 KOG0063 RNAse L inhibitor, ABC 98.1 3.3E-06 7.1E-11 85.0 4.6 112 11-123 98-252 (592)
456 cd01120 RecA-like_NTPases RecA 98.1 8.2E-06 1.8E-10 71.3 6.7 33 15-49 1-33 (165)
457 cd01128 rho_factor Transcripti 98.1 4.7E-06 1E-10 80.0 5.4 31 9-39 12-42 (249)
458 TIGR02524 dot_icm_DotB Dot/Icm 98.1 8.7E-06 1.9E-10 82.1 7.4 106 11-134 132-242 (358)
459 cd02023 UMPK Uridine monophosp 98.1 5.7E-06 1.2E-10 76.2 5.4 24 15-38 1-24 (198)
460 TIGR00235 udk uridine kinase. 98.0 1.8E-06 3.9E-11 80.3 2.0 28 11-38 4-31 (207)
461 PRK14722 flhF flagellar biosyn 98.0 1.8E-05 3.9E-10 80.0 8.8 107 2-126 126-240 (374)
462 TIGR00630 uvra excinuclease AB 98.0 8.1E-06 1.8E-10 91.2 6.6 33 91-123 494-528 (924)
463 PRK15066 inner membrane transp 98.0 0.00014 3E-09 69.9 14.3 139 268-412 101-256 (257)
464 PRK00349 uvrA excinuclease ABC 98.0 9.5E-06 2.1E-10 90.9 6.8 33 91-123 496-530 (943)
465 PRK09862 putative ATP-dependen 98.0 2.2E-05 4.8E-10 82.3 8.3 121 2-131 199-323 (506)
466 PRK08149 ATP synthase SpaL; Va 97.9 9.6E-06 2.1E-10 83.2 5.3 66 2-68 141-215 (428)
467 PRK03846 adenylylsulfate kinas 97.9 4.6E-06 1E-10 77.1 2.5 107 11-137 22-131 (198)
468 PF13304 AAA_21: AAA domain; P 97.9 1.3E-05 2.7E-10 74.3 5.0 31 94-124 246-279 (303)
469 TIGR02322 phosphon_PhnN phosph 97.9 6.3E-05 1.4E-09 68.0 9.4 26 13-38 1-26 (179)
470 PRK00300 gmk guanylate kinase; 97.9 1.1E-05 2.4E-10 74.5 3.6 28 11-38 3-30 (205)
471 PLN02796 D-glycerate 3-kinase 97.8 7.3E-06 1.6E-10 81.7 2.3 53 2-54 81-142 (347)
472 TIGR03861 phenyl_ABC_PedC alco 97.8 0.0004 8.7E-09 66.4 14.1 130 268-407 99-250 (253)
473 COG0842 ABC-type multidrug tra 97.8 0.00039 8.3E-09 66.1 13.3 135 271-410 131-284 (286)
474 PRK11545 gntK gluconate kinase 97.8 6E-06 1.3E-10 74.1 0.7 60 19-84 1-63 (163)
475 cd01136 ATPase_flagellum-secre 97.8 3.1E-05 6.7E-10 77.0 5.8 46 2-50 59-104 (326)
476 PRK06067 flagellar accessory p 97.8 5.6E-05 1.2E-09 71.6 7.1 28 7-34 19-46 (234)
477 TIGR03015 pepcterm_ATPase puta 97.7 9.4E-05 2E-09 71.1 8.3 36 3-38 32-68 (269)
478 PLN02318 phosphoribulokinase/u 97.7 2.6E-05 5.7E-10 82.4 4.6 63 14-82 66-128 (656)
479 PRK09099 type III secretion sy 97.7 4.3E-05 9.3E-10 78.8 6.0 48 2-52 153-200 (441)
480 PRK14721 flhF flagellar biosyn 97.7 7.1E-05 1.5E-09 76.8 7.4 87 10-118 188-283 (420)
481 TIGR03263 guanyl_kin guanylate 97.7 2.7E-05 5.9E-10 70.3 3.8 26 13-38 1-26 (180)
482 TIGR02546 III_secr_ATP type II 97.7 7.4E-05 1.6E-09 77.0 7.2 47 2-51 135-181 (422)
483 TIGR01360 aden_kin_iso1 adenyl 97.7 8.3E-06 1.8E-10 74.0 0.1 24 13-36 3-26 (188)
484 PRK07960 fliI flagellum-specif 97.7 5.7E-05 1.2E-09 77.9 6.2 61 8-68 170-238 (455)
485 PRK05688 fliI flagellum-specif 97.7 3.8E-05 8.3E-10 79.2 4.7 51 2-53 158-209 (451)
486 PRK07594 type III secretion sy 97.7 4.2E-05 9E-10 78.7 5.0 48 2-52 145-192 (433)
487 cd00879 Sar1 Sar1 subfamily. 97.7 4.1E-05 8.9E-10 69.5 4.3 34 2-36 9-42 (190)
488 PRK05480 uridine/cytidine kina 97.7 4.9E-05 1.1E-09 70.6 4.8 27 11-37 4-30 (209)
489 cd01124 KaiC KaiC is a circadi 97.7 0.00028 6.1E-09 63.8 9.7 37 98-134 91-135 (187)
490 PRK14723 flhF flagellar biosyn 97.7 9.9E-05 2.2E-09 80.5 7.7 37 2-38 174-210 (767)
491 TIGR03498 FliI_clade3 flagella 97.6 5.8E-05 1.3E-09 77.5 5.1 47 5-53 132-178 (418)
492 PRK00098 GTPase RsgA; Reviewed 97.6 0.00012 2.6E-09 72.2 6.9 68 12-81 163-241 (298)
493 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.0001 2.2E-09 72.3 6.2 72 9-83 158-240 (287)
494 TIGR01026 fliI_yscN ATPase Fli 97.6 7E-05 1.5E-09 77.5 5.0 46 2-50 153-198 (440)
495 PF13476 AAA_23: AAA domain; P 97.6 5.1E-05 1.1E-09 68.9 3.4 32 3-35 10-41 (202)
496 TIGR03497 FliI_clade2 flagella 97.6 0.00011 2.3E-09 75.6 5.9 49 2-53 127-175 (413)
497 PRK08472 fliI flagellum-specif 97.6 9.8E-05 2.1E-09 76.0 5.5 49 2-53 147-195 (434)
498 cd00009 AAA The AAA+ (ATPases 97.6 0.00018 3.8E-09 61.0 6.3 26 12-37 18-43 (151)
499 PRK13851 type IV secretion sys 97.6 0.0003 6.5E-09 70.6 8.8 101 10-130 159-261 (344)
500 cd04104 p47_IIGP_like p47 (47- 97.5 5.5E-05 1.2E-09 69.8 2.8 32 16-49 4-35 (197)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-76 Score=626.10 Aligned_cols=405 Identities=35% Similarity=0.567 Sum_probs=326.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
++|+||||+++|||++|||||||||||||||+|+|+...+ ..+|+|++||++.+. .+++.+|||.|||.++|++||+|
T Consensus 44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~E 123 (613)
T KOG0061|consen 44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRE 123 (613)
T ss_pred eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHH
Confidence 4899999999999999999999999999999999998764 789999999977654 67888999999999999999999
Q ss_pred HHHHHHHcCCch-----------------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 79 TLVFIALFRLPI-----------------------------------------KRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 79 ~l~f~~~~~~~~-----------------------------------------krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+|.|++.+|+|. |||+||.||++||++|+|||||||||+
T Consensus 124 tL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 124 TLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence 999999998873 899999999999999999999999999
Q ss_pred HHHHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308 118 TIAKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA 165 (413)
Q Consensus 118 ~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~ 165 (413)
.+|.++ ++|++|+++|+|+++++.+||+++||+||+..|||||++|+.
T Consensus 204 ~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~ 283 (613)
T KOG0061|consen 204 FSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLL 283 (613)
T ss_pred hhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHH
Confidence 999877 689999999999999999999999999999999999999999
Q ss_pred CCccCCCCCcchH--HHHHHHHHHHHhhhHHHHHHHHHhhccCCCCCCCCCCCCCcCCCHHHHHHHHHHHhhhc--c-cc
Q 048308 166 NGVVSGDPKDDQK--ALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQ--S-SS 240 (413)
Q Consensus 166 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--~-~~ 240 (413)
+++ ++.+... .......+.++. .+...+......+... ...+.......+||.|+.+|++|.+++ | +.
T Consensus 284 s~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~ 356 (613)
T KOG0061|consen 284 SVD---SGTRELEEAVRIAKLINKFSQ--TDNLKKTLEALEKSLS--TSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPS 356 (613)
T ss_pred ccC---CCchhHHhHHHHHHHhhhccc--cchhhhhHHHHhhhcc--cccccccccCCcHHHHHHHHHHHHhHHHhhcHH
Confidence 865 1111111 111112222220 0000110000000000 001111112789999999999999988 3 66
Q ss_pred hhHhhhhhcc-------------ccChHHHHH----HHhh-------------hhc--------------ccchHHHHHH
Q 048308 241 FCGSKLLSQL-------------TSHRIHIIN----SHIC-------------YCF--------------NFRLSSYFVA 276 (413)
Q Consensus 241 ~~~~~~~~~i-------------~~~~~~~~~----~f~~-------------~~f--------------~Y~~~ay~lA 276 (413)
+...|+++.+ +.+..++++ +|+. ..| +|+.++|++|
T Consensus 357 ~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la 436 (613)
T KOG0061|consen 357 LLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLA 436 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHH
Confidence 6677777766 334455555 1111 111 8999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh----
Q 048308 277 KTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL---- 341 (413)
Q Consensus 277 ~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~---- 341 (413)
++++++|+.++.+++|++|+|||+||+++..+ .++++++|+++|++.||...|++++++++++|+
T Consensus 437 ~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G 516 (613)
T KOG0061|consen 437 KTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGG 516 (613)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhh
Confidence 99999999999999999999999999999977 467899999999999999999999999988876
Q ss_pred ----hccCcchhhhhhccCHHHHHHHHHHHhhcCC--CCc-------c---------cCC--CCChHHHHHHHHHHHHHH
Q 048308 342 ----LQRLPVFTSWFEYASLTYYSYRLLLPSQYKA--NDT-------C---------YAG--LSHQIICVAALAVMLLGS 397 (413)
Q Consensus 342 ----~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~--~~~-------~---------~~~--~~~~~~~~~il~~~~~~~ 397 (413)
.++||+||+|++|+||++|+|||+++|||++ .++ + .++ ..+.|.|+.++.+++++|
T Consensus 517 ~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 596 (613)
T KOG0061|consen 517 FFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFF 596 (613)
T ss_pred hhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHH
Confidence 4699999999999999999999999999995 111 1 233 357899999999999999
Q ss_pred HHHHHHHHHhhcccC
Q 048308 398 RLAAYDALMGIGRIS 412 (413)
Q Consensus 398 ~~l~~~~L~~~~~~~ 412 (413)
|+++|++|++..|+.
T Consensus 597 ~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 597 RVLGYLALRFRVKRK 611 (613)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999865543
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-74 Score=619.75 Aligned_cols=410 Identities=43% Similarity=0.730 Sum_probs=325.6
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|+|+|++++|||+++|+||||||||||+|+|+|+.+++..+|+|.+||++..+..++.++||+|++.+++.+||+||+
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 161 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETL 161 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHH
Confidence 38999999999999999999999999999999999987544689999999987655556799999999999999999999
Q ss_pred HHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 81 VFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 81 ~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
.|++.++++ +||++||++|+.+|++++|||||+|||+.+
T Consensus 162 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~ 241 (659)
T PLN03211 162 VFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241 (659)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHH
Confidence 997654321 189999999999999999999999999999
Q ss_pred HHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308 120 AKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167 (413)
Q Consensus 120 ~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~ 167 (413)
+.++ ++|++|+++|.|+++++.+||+++|++||++.|||||++++.++
T Consensus 242 ~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~ 321 (659)
T PLN03211 242 AYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANG 321 (659)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCc
Confidence 9877 47789999999999999999999999999999999999999876
Q ss_pred ccCCCC--CcchHHHHHHHHHHHHhhhHHHHHHHHHhh--ccCCC------CCCCC-CCCCCcCCCHHHHHHHHHHHhhh
Q 048308 168 VVSGDP--KDDQKALKETLISAYKSNLSEKLKASFQEV--GDHSL------IGPGN-KKNSNWSTTWWQQSSELLKRNFR 236 (413)
Q Consensus 168 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~-~~~~~~~~~~~~Q~~~l~~R~~~ 236 (413)
...... +.+.+...+.+.+.|++...++..+.++.. ..... ..... .....+.++||+|+.+|++|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~ 401 (659)
T PLN03211 322 VCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLK 401 (659)
T ss_pred cccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHH
Confidence 432111 111122234455566543222222221110 00000 00000 01123457899999999999998
Q ss_pred cc--cchhHhhhhhcc-----------ccChHHHHH-----HHhh------------hhc--------------ccchHH
Q 048308 237 QS--SSFCGSKLLSQL-----------TSHRIHIIN-----SHIC------------YCF--------------NFRLSS 272 (413)
Q Consensus 237 ~~--~~~~~~~~~~~i-----------~~~~~~~~~-----~f~~------------~~f--------------~Y~~~a 272 (413)
++ +.+...|+++.+ +.+..++++ ||.+ ..| +|++++
T Consensus 402 ~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~ 481 (659)
T PLN03211 402 ERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSS 481 (659)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHH
Confidence 73 555567777665 445566676 2221 011 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 048308 273 YFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL 341 (413)
Q Consensus 273 y~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~ 341 (413)
|++|++++|+|+.++.+++|++|+|||+||++++.+ .++++++|+++|+++||+.+|+.++|+++++++
T Consensus 482 Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~ 561 (659)
T PLN03211 482 YFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFV 561 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 467899999999999999999999999998877
Q ss_pred ------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc------c-----------------cCCCCChHHHHHHHHH
Q 048308 342 ------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT------C-----------------YAGLSHQIICVAALAV 392 (413)
Q Consensus 342 ------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~------~-----------------~~~~~~~~~~~~il~~ 392 (413)
.++||+||+|++|+||++|+|||++.|||++.+. | .++..+.|.|+++|++
T Consensus 562 lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~ 641 (659)
T PLN03211 562 LTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIF 641 (659)
T ss_pred HHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHH
Confidence 5799999999999999999999999999976421 1 1122357999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 048308 393 MLLGSRLAAYDALMGIGR 410 (413)
Q Consensus 393 ~~~~~~~l~~~~L~~~~~ 410 (413)
++++||+++|++|+++++
T Consensus 642 ~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 642 MFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999987653
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3e-71 Score=592.45 Aligned_cols=409 Identities=29% Similarity=0.511 Sum_probs=326.0
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
++|+|+|++++|||+++|+||||||||||||+|+|+.+++ ..+|+|.+||.+.+. ..++.++||+|+|.+++++||+|
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e 118 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE 118 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence 3899999999999999999999999999999999998653 368999999998763 56778999999999999999999
Q ss_pred HHHHHHHcCCc------------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 79 TLVFIALFRLP------------------------------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 79 ~l~f~~~~~~~------------------------------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
||.|++.++++ +||++||++|+.+|++++|||||+|||
T Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD 198 (617)
T TIGR00955 119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198 (617)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence 99998765432 189999999999999999999999999
Q ss_pred HHHHHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308 117 STIAKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL 164 (413)
Q Consensus 117 ~~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 164 (413)
+.++.++ ++|++|+++|+|+++++.+||+++|++||+..|||||++++
T Consensus 199 ~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 278 (617)
T TIGR00955 199 SFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278 (617)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHH
Confidence 9999887 57889999999999999999999999999999999999999
Q ss_pred hCCccCCCCCcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccC--CC-CCCCCCCCCCcCCCHHHHHHHHHHHhhhc--c
Q 048308 165 ANGVVSGDPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDH--SL-IGPGNKKNSNWSTTWWQQSSELLKRNFRQ--S 238 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--~ 238 (413)
.+..... +....+..+++.+.|++. ..++..++....... .. ...+..+...+..+|++|+..|++|++++ |
T Consensus 279 ~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 356 (617)
T TIGR00955 279 LAVIPGS--ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLR 356 (617)
T ss_pred hhcCccc--ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence 8753221 111223334455555442 222222222211110 00 00111122456789999999999999987 3
Q ss_pred -cchhHhhhhhcc-------------ccChHHHHH----HHhh-------------h-------hc-------ccchHHH
Q 048308 239 -SSFCGSKLLSQL-------------TSHRIHIIN----SHIC-------------Y-------CF-------NFRLSSY 273 (413)
Q Consensus 239 -~~~~~~~~~~~i-------------~~~~~~~~~----~f~~-------------~-------~f-------~Y~~~ay 273 (413)
+.....|+++.+ +.+..++++ +|+. . +| +|++++|
T Consensus 357 ~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y 436 (617)
T TIGR00955 357 DPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAY 436 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHH
Confidence 445555554444 345566665 1211 0 11 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-
Q 048308 274 FVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL- 341 (413)
Q Consensus 274 ~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~- 341 (413)
++|++++|+|+.++.+++|++|+|||+||++++.+ .+++.++|+++++++|+..+|+.++++++++++
T Consensus 437 ~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l 516 (617)
T TIGR00955 437 FLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 346788999999999999999999999988876
Q ss_pred -------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-----------c---------cCCC--CChHHHHHHHHH
Q 048308 342 -------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT-----------C---------YAGL--SHQIICVAALAV 392 (413)
Q Consensus 342 -------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~-----------~---------~~~~--~~~~~~~~il~~ 392 (413)
.++||+||+|++|+||++|++||++.|||.+... | .+|+ ++.|.|++++++
T Consensus 517 f~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~ 596 (617)
T TIGR00955 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVI 596 (617)
T ss_pred HhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHH
Confidence 5899999999999999999999999999987432 1 2333 468999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 048308 393 MLLGSRLAAYDALMGIGRI 411 (413)
Q Consensus 393 ~~~~~~~l~~~~L~~~~~~ 411 (413)
+.++|++++|++||+..|.
T Consensus 597 ~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 597 LIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999985443
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.3e-70 Score=623.58 Aligned_cols=409 Identities=22% Similarity=0.263 Sum_probs=326.0
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+||+|+||.++|||+++|+||||||||||||+|+|++++. ..+|+|.+||++..+ ..++.++||+|+|.|++++||+|
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 3899999999999999999999999999999999998753 468999999998754 23567999999999999999999
Q ss_pred HHHHHHHcC-----------------------------------------------------Cc----------------
Q 048308 79 TLVFIALFR-----------------------------------------------------LP---------------- 89 (413)
Q Consensus 79 ~l~f~~~~~-----------------------------------------------------~~---------------- 89 (413)
||.|++.++ +.
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 999976432 10
Q ss_pred ---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---------------------------------HHhcCCcEEE
Q 048308 90 ---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---------------------------------LLNSEGNSLH 133 (413)
Q Consensus 90 ---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---------------------------------~ll~~G~~v~ 133 (413)
+|||+||++|+.+|+++||||||+|||+.++.++ ++|++|+++|
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy 418 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE
Confidence 1899999999999999999999999999999887 5788999999
Q ss_pred ecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC----C-CcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccCC
Q 048308 134 VGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD----P-KDDQKALKETLISAYKSN-LSEKLKASFQEVGDHS 207 (413)
Q Consensus 134 ~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 207 (413)
+|+++++.+||+++||.||++.|||||++++++...... . .+.+....+++.++|++. ..+++.++++.+.+..
T Consensus 419 ~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 498 (1470)
T PLN03140 419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKS 498 (1470)
T ss_pred eCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999987532110 0 000112345677788763 3344444443322211
Q ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHhhhc--c-cchhHhhhhhcc-----------cc--C---hHHHHH-----HHhh
Q 048308 208 LIGPGNKKNSNWSTTWWQQSSELLKRNFRQ--S-SSFCGSKLLSQL-----------TS--H---RIHIIN-----SHIC 263 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--~-~~~~~~~~~~~i-----------~~--~---~~~~~~-----~f~~ 263 (413)
...+...+.++|..+++.|++.|++|+++. | +.....|+++.+ +. + ..+.+. ||..
T Consensus 499 ~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~ 578 (1470)
T PLN03140 499 QSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSM 578 (1470)
T ss_pred hcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHH
Confidence 111112234568899999999999999987 3 555556666554 11 1 111111 2211
Q ss_pred ------------------hhc-------ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH----------
Q 048308 264 ------------------YCF-------NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------- 308 (413)
Q Consensus 264 ------------------~~f-------~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------- 308 (413)
.+| +|++++|++|++++|+|+.++.+++|++|+|||+||++++++
T Consensus 579 l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l 658 (1470)
T PLN03140 579 IINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFL 658 (1470)
T ss_pred HHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHH
Confidence 011 799999999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc----
Q 048308 309 -LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT---- 375 (413)
Q Consensus 309 -~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~---- 375 (413)
.++++++++++++++|++.+|+.++++++++++ .++||+||+|++|+||++|||||++.|||.+.++
T Consensus 659 ~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~ 738 (1470)
T PLN03140 659 IQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKM 738 (1470)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcc
Confidence 346788999999999999999999999988876 5899999999999999999999999999976431
Q ss_pred c-------------cCCC--CC--hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048308 376 C-------------YAGL--SH--QIICVAALAVMLLGSRLAAYDALMGIG 409 (413)
Q Consensus 376 ~-------------~~~~--~~--~~~~~~il~~~~~~~~~l~~~~L~~~~ 409 (413)
| .+|+ ++ .|+|+++|++++++|+++++++|++++
T Consensus 739 ~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 739 ASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 2333 23 499999999999999999999999876
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-69 Score=619.81 Aligned_cols=410 Identities=21% Similarity=0.284 Sum_probs=326.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEEEECCcccCh---hccccEEEEecCCccCCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--GETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lT 75 (413)
+||+|+|+.++|||+++|+||||||||||||+|+|+.+. .+.+|+|.+||.+..+ ..++.++||+|+|.+++++|
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 389999999999999999999999999999999999742 2478999999987643 34556999999999999999
Q ss_pred HHHHHHHHHHcCCc----------------------------------------------hhHHHHHHHHhhCCCEEEEe
Q 048308 76 VTETLVFIALFRLP----------------------------------------------IKRVSRAQELLINPSLLFLD 109 (413)
Q Consensus 76 v~e~l~f~~~~~~~----------------------------------------------~krvsia~~l~~~p~llllD 109 (413)
|+||+.|++.++.| +|||+||++|+.+|++++||
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 99999998654321 18999999999999999999
Q ss_pred CCCCCCCHHHHHHH---------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCC
Q 048308 110 EPASGLDSTIAKQI---------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMN 156 (413)
Q Consensus 110 EPtsgLD~~~~~~i---------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n 156 (413)
|||+|||+.++.++ ++|++|+++|+|+++++.+||+++||+||++.|
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n 314 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQT 314 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999877 478899999999999999999999999999999
Q ss_pred hhHHHHHhhCCccCC---CCCcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccC---------------CCCCCCCCCCC
Q 048308 157 PSDFLLDLANGVVSG---DPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDH---------------SLIGPGNKKNS 217 (413)
Q Consensus 157 ~ad~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 217 (413)
||||++++++.+... ..+...+...+++.++|++. ..++..++++...+. ..........+
T Consensus 315 ~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1394)
T TIGR00956 315 TADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSS 394 (1394)
T ss_pred hHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCC
Confidence 999999998743211 10111122345667777652 223333332221100 00001112234
Q ss_pred CcCCCHHHHHHHHHHHhhhc--c-cchhHhhhhhcc-------------ccChHHHHH----HHhhh-------------
Q 048308 218 NWSTTWWQQSSELLKRNFRQ--S-SSFCGSKLLSQL-------------TSHRIHIIN----SHICY------------- 264 (413)
Q Consensus 218 ~~~~~~~~Q~~~l~~R~~~~--~-~~~~~~~~~~~i-------------~~~~~~~~~----~f~~~------------- 264 (413)
++..++|+|+++|++|++++ | +.....|+++.+ +.+..++++ +|++.
T Consensus 395 ~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~ 474 (1394)
T TIGR00956 395 PYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIAS 474 (1394)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999987 3 555566665554 345566666 22220
Q ss_pred ------hc-------ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHH
Q 048308 265 ------CF-------NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIG 320 (413)
Q Consensus 265 ------~f-------~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~ 320 (413)
+| +|++++|++|++++|+|+.++.+++|++|+|||+||++++++ .+++.++++++|
T Consensus 475 ~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~ 554 (1394)
T TIGR00956 475 MYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIG 554 (1394)
T ss_pred HHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 799999999999999999999999999999999999999987 346778999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-----------------
Q 048308 321 AVLMKQKVASTITATIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT----------------- 375 (413)
Q Consensus 321 a~~~~~~~A~~i~~~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~----------------- 375 (413)
+++||+++|+.++++++++++ .++||+||+|++|+||++|+|||++.|||.+..+
T Consensus 555 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~ 634 (1394)
T TIGR00956 555 AVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGV 634 (1394)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCc
Confidence 999999999999999988776 5899999999999999999999999999976321
Q ss_pred ----c--------------------cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308 376 ----C--------------------YAGL--SHQIICVAALAVMLLGSRLAAYDALMGIGR 410 (413)
Q Consensus 376 ----~--------------------~~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 410 (413)
| .+++ ++.|+|++++++++++|++++++++++++.
T Consensus 635 ~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 635 TNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred cCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 1222 468999999999999999999999998764
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-68 Score=610.48 Aligned_cols=404 Identities=24% Similarity=0.353 Sum_probs=324.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+|+||||+++|||+++||||||||||||||+|+|+.+++..+|+|.+||.+..+ ..++.++||+|+|.+++.+||+|+|
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 799999999999999999999999999999999997755688999999987653 4567799999999999999999999
Q ss_pred HHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 81 VFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 81 ~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
.|++.+++| +||++||++|+.+|++|||||||+|||+.+
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 998755431 189999999999999999999999999999
Q ss_pred HHHH--------------------------------HHhcC-CcEEEecCc----chHhHHHHhc-CC-CCCCCCChhHH
Q 048308 120 AKQI--------------------------------LLNSE-GNSLHVGKG----DGVMSYFVGI-GF-EPSAAMNPSDF 160 (413)
Q Consensus 120 ~~~i--------------------------------~ll~~-G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~n~ad~ 160 (413)
+..+ ++|++ |+++|+|+. +++.+||+++ |+ .||+..|||||
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~ 1134 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhh
Confidence 9877 36665 899999996 6899999998 66 49999999999
Q ss_pred HHHhhCCccCCCCCcchHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCCCCCCCCCCCCcCCCHHHHHHHHHHHhhhc--
Q 048308 161 LLDLANGVVSGDPKDDQKALKETLISAYKS-NLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQ-- 237 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~-- 237 (413)
++++.+..... ....++.+.|++ ...++..+.+++.........+....+++..++|+|+.+|++|++++
T Consensus 1135 ~l~v~~~~~~~-------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 1207 (1470)
T PLN03140 1135 MLEVSSLAAEV-------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYW 1207 (1470)
T ss_pred hhhhhcccccc-------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHH
Confidence 99997632110 112245666665 23333333333322211111111123467899999999999999987
Q ss_pred c-cchhHhhhhhcc-------------ccCh---HHHHH----HHhh-----h--------h-------c-------ccc
Q 048308 238 S-SSFCGSKLLSQL-------------TSHR---IHIIN----SHIC-----Y--------C-------F-------NFR 269 (413)
Q Consensus 238 ~-~~~~~~~~~~~i-------------~~~~---~~~~~----~f~~-----~--------~-------f-------~Y~ 269 (413)
| +.+...|+++.+ +++. .++++ +|.+ + + | +|+
T Consensus 1208 R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~ 1287 (1470)
T PLN03140 1208 RSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYS 1287 (1470)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 3 677777777655 2222 34444 2211 0 1 1 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308 270 LSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVL 338 (413)
Q Consensus 270 ~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~ 338 (413)
+++|++|++++|+|+.++.+++|++|+|||+||++++.. .+++.++|+++++++||.++|+.+++++++
T Consensus 1288 ~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~ 1367 (1470)
T PLN03140 1288 ALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYG 1367 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876 356788999999999999999999999988
Q ss_pred HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc---------------c---cCCC--CChHHHHHHH
Q 048308 339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT---------------C---YAGL--SHQIICVAAL 390 (413)
Q Consensus 339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~---------------~---~~~~--~~~~~~~~il 390 (413)
+++ .++||+||+|++|+||++|+++||+.|||++... | .+|+ ++.|++++++
T Consensus 1368 ~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il 1447 (1470)
T PLN03140 1368 LFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVL 1447 (1470)
T ss_pred HHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhH
Confidence 876 5899999999999999999999999999987432 0 2343 5679999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccC
Q 048308 391 AVMLLGSRLAAYDALMGIGRIS 412 (413)
Q Consensus 391 ~~~~~~~~~l~~~~L~~~~~~~ 412 (413)
+++.++|++++++++++++..+
T Consensus 1448 ~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1448 VGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999987654
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-68 Score=580.22 Aligned_cols=402 Identities=24% Similarity=0.378 Sum_probs=330.4
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
++|+||||.++||.++||||+||||||||||+||||...|.++|+|.+||.|.+ +.++|.+|||+|+|.|.+.+||||.
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrES 884 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRES 884 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHH
Confidence 489999999999999999999999999999999999887889999999999998 6889999999999999999999999
Q ss_pred HHHHHHcCCch----------------------------------------hHHHHHHHHhhCC-CEEEEeCCCCCCCHH
Q 048308 80 LVFIALFRLPI----------------------------------------KRVSRAQELLINP-SLLFLDEPASGLDST 118 (413)
Q Consensus 80 l~f~~~~~~~~----------------------------------------krvsia~~l~~~p-~llllDEPtsgLD~~ 118 (413)
|+|+|.+|+|. ||++||+||+.+| .||||||||||||+.
T Consensus 885 L~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsq 964 (1391)
T KOG0065|consen 885 LRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQ 964 (1391)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHH
Confidence 99999999863 8999999999999 999999999999999
Q ss_pred HHHHH--------------------------------HHhc-CCcEEEecCcchH----hHHHHhcC-CCCCCCCChhHH
Q 048308 119 IAKQI--------------------------------LLNS-EGNSLHVGKGDGV----MSYFVGIG-FEPSAAMNPSDF 160 (413)
Q Consensus 119 ~~~~i--------------------------------~ll~-~G~~v~~G~~~~~----~~~f~~~g-~~~p~~~n~ad~ 160 (413)
+|..| ++|+ .|++||+|+..+. ++||+++| ++||...|||||
T Consensus 965 aA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~ 1044 (1391)
T KOG0065|consen 965 AAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEW 1044 (1391)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHH
Confidence 99766 4665 6899999997764 56999988 899999999999
Q ss_pred HHHhhCCccCCCCCcchHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCCC-CCCCCCCCCcCCCHHHHHHHHHHHhhhc-
Q 048308 161 LLDLANGVVSGDPKDDQKALKETLISAYKS-NLSEKLKASFQEVGDHSLI-GPGNKKNSNWSTTWWQQSSELLKRNFRQ- 237 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~- 237 (413)
++|+++..... ....++.+.|++ ..+++.++++++..+.... ..+.....++..|+|.|++.+++|++..
T Consensus 1045 mLevi~~~~~~-------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~sy 1117 (1391)
T KOG0065|consen 1045 MLEVIGAGAEA-------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSY 1117 (1391)
T ss_pred HHhhccccccc-------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHH
Confidence 99998632111 122356777876 5566677777766554433 2223335568899999999999999987
Q ss_pred -c-cchhHhhhhhcc-------------ccChHHHHH-HHhhh---h--------------------c-------ccchH
Q 048308 238 -S-SSFCGSKLLSQL-------------TSHRIHIIN-SHICY---C--------------------F-------NFRLS 271 (413)
Q Consensus 238 -~-~~~~~~~~~~~i-------------~~~~~~~~~-~f~~~---~--------------------f-------~Y~~~ 271 (413)
| +.+.++|++..+ +++..++|| ++.+| + + +|++.
T Consensus 1118 WRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~ 1197 (1391)
T KOG0065|consen 1118 WRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWT 1197 (1391)
T ss_pred hCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHH
Confidence 4 888888887766 456678888 22221 0 0 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 048308 272 SYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQY 340 (413)
Q Consensus 272 ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~ 340 (413)
+|.+|++++|+|+.++++++|.+|+|||+|+..++.+ .++..++|+|+.+++||.++|..+++++..++
T Consensus 1198 ~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1198 PFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876 34567899999999999999999999988775
Q ss_pred h--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-c----------------------cCC----C--CCh
Q 048308 341 L--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT-C----------------------YAG----L--SHQ 383 (413)
Q Consensus 341 ~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~-~----------------------~~~----~--~~~ 383 (413)
. ...||.||+|+||+||+.|-.++++..++++... | .++ + +..
T Consensus 1278 ~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~ 1357 (1391)
T KOG0065|consen 1278 NLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL 1357 (1391)
T ss_pred HHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc
Confidence 4 5799999999999999999999999999997532 1 122 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048308 384 IICVAALAVMLLGSRLAAYDALMGIG 409 (413)
Q Consensus 384 ~~~~~il~~~~~~~~~l~~~~L~~~~ 409 (413)
-...++..++.+++.+++.++.++.+
T Consensus 1358 a~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1358 ATTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred ceeEEEEeeeehHHHHHHHHHHHHHH
Confidence 22233455677788888888877643
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.5e-66 Score=590.26 Aligned_cols=402 Identities=24% Similarity=0.359 Sum_probs=321.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+|+|||++++|||+++|+||||||||||||+|+|+.+++ ..+|+|.+||++.....++.++||+|+|.+++.+||+|+|
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L 857 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESL 857 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHH
Confidence 799999999999999999999999999999999998654 4579999999988666677899999999999999999999
Q ss_pred HHHHHcCCc----------------------------------------hhHHHHHHHHhhCCC-EEEEeCCCCCCCHHH
Q 048308 81 VFIALFRLP----------------------------------------IKRVSRAQELLINPS-LLFLDEPASGLDSTI 119 (413)
Q Consensus 81 ~f~~~~~~~----------------------------------------~krvsia~~l~~~p~-llllDEPtsgLD~~~ 119 (413)
.|++.++.| +||++||++|+.+|+ +|+|||||+|||+.+
T Consensus 858 ~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~ 937 (1394)
T TIGR00956 858 RFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937 (1394)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHH
Confidence 998765431 189999999999997 999999999999999
Q ss_pred HHHH--------------------------------HHhcCC-cEEEecCc----chHhHHHHhcCC-CCCCCCChhHHH
Q 048308 120 AKQI--------------------------------LLNSEG-NSLHVGKG----DGVMSYFVGIGF-EPSAAMNPSDFL 161 (413)
Q Consensus 120 ~~~i--------------------------------~ll~~G-~~v~~G~~----~~~~~~f~~~g~-~~p~~~n~ad~~ 161 (413)
+.++ ++|++| +++|+|++ +++.+||+++|+ +||+..|||||+
T Consensus 938 ~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ 1017 (1394)
T TIGR00956 938 AWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWM 1017 (1394)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHH
Confidence 9877 366776 99999997 578999999995 999999999999
Q ss_pred HHhhCCccCCCCCcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccCCC---CCCCCCCCCCcCCCHHHHHHHHHHHhhhc
Q 048308 162 LDLANGVVSGDPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDHSL---IGPGNKKNSNWSTTWWQQSSELLKRNFRQ 237 (413)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~ 237 (413)
+|+.+..... + ..+++.+.|++. ..++..++++....... ........+++.++||+|+++|++|++++
T Consensus 1018 ldvi~~~~~~---~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~ 1090 (1394)
T TIGR00956 1018 LEVIGAAPGA---H----ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQ 1090 (1394)
T ss_pred HHHhhccccc---c----hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHH
Confidence 9998642211 1 112344555542 22233333322211110 00011122467899999999999999987
Q ss_pred --c-cchhHhhhhhcc-------------ccChHHHHH----HHhh------------hhc---------------ccch
Q 048308 238 --S-SSFCGSKLLSQL-------------TSHRIHIIN----SHIC------------YCF---------------NFRL 270 (413)
Q Consensus 238 --~-~~~~~~~~~~~i-------------~~~~~~~~~----~f~~------------~~f---------------~Y~~ 270 (413)
| +.+...|+++.+ +++..++++ +|+. ..| +|++
T Consensus 1091 ~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~ 1170 (1394)
T TIGR00956 1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSW 1170 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCH
Confidence 4 667777777666 456677777 1211 001 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH------------------HHHHHHHHHHHHHhcCCHHHHHHH
Q 048308 271 SSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW------------------LIKPQSIRLAIGAVLMKQKVASTI 332 (413)
Q Consensus 271 ~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~------------------~l~~~~~g~~i~a~~~~~~~A~~i 332 (413)
++|++|++++|+|+.++.+++|++|+|||+||++++.. .+++.++|+++++++|+..+|+.+
T Consensus 1171 ~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~ 1250 (1394)
T TIGR00956 1171 LAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVL 1250 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999999999999999999876521 356789999999999999999999
Q ss_pred HHHHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-----------------------------
Q 048308 333 TATIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT----------------------------- 375 (413)
Q Consensus 333 ~~~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~----------------------------- 375 (413)
+|+++++++ .++||+||+|++|+||++|++||++.|||.+...
T Consensus 1251 ~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~ 1330 (1394)
T TIGR00956 1251 ASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENA 1330 (1394)
T ss_pred HHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhC
Confidence 999988876 4799999999999999999999999999977431
Q ss_pred ---------------c------------cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048308 376 ---------------C------------YAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRI 411 (413)
Q Consensus 376 ---------------~------------~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 411 (413)
| +++.++.|+|+++++++++++ ++++++|++..|.
T Consensus 1331 ~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1331 GGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred CcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 1 223456899999999999999 8888999875543
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-66 Score=562.52 Aligned_cols=409 Identities=25% Similarity=0.338 Sum_probs=330.0
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccChh-ccccEEEEecCCccCCCCCHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRT-VKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~-~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+||+|+||.++|||++.++||+||||||||++++|.++.. ...|+|.+||++.++. .++.++|..|+|.|+|.|||||
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 3899999999999999999999999999999999987642 4568999999998763 3577999999999999999999
Q ss_pred HHHHHHHcCCch----------------------------------------------hHHHHHHHHhhCCCEEEEeCCC
Q 048308 79 TLVFIALFRLPI----------------------------------------------KRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 79 ~l~f~~~~~~~~----------------------------------------------krvsia~~l~~~p~llllDEPt 112 (413)
+|.|+++++.+. |||++|++++.+++++++||+|
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 999999987751 8999999999999999999999
Q ss_pred CCCCHHHHHHH---------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhH
Q 048308 113 SGLDSTIAKQI---------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSD 159 (413)
Q Consensus 113 sgLD~~~~~~i---------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad 159 (413)
+|||+.++.++ ++|++|++||+||.+++++||+++||.||++.++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999887 689999999999999999999999999999999999
Q ss_pred HHHHhhCCccCCC----CCcchH-HHHHHHHHHHHh-hhHHHHHHHHHhhccCCCCCCCCCCCCCcCCCHHHHHHHHHHH
Q 048308 160 FLLDLANGVVSGD----PKDDQK-ALKETLISAYKS-NLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKR 233 (413)
Q Consensus 160 ~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R 233 (413)
|+.++++...... .+...+ ...+++.+.|++ +..+++..++..+.+..+........++|..++|.|++.|++|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 9999998432211 111111 123667777776 4455555555544443333333445678999999999999999
Q ss_pred hhhcc---cchhHhhhhhcc-----------ccC---hHHHHH----HHhh---h----------h------c-------
Q 048308 234 NFRQS---SSFCGSKLLSQL-----------TSH---RIHIIN----SHIC---Y----------C------F------- 266 (413)
Q Consensus 234 ~~~~~---~~~~~~~~~~~i-----------~~~---~~~~~~----~f~~---~----------~------f------- 266 (413)
.|+.. ..++..++++.+ +.+ ..+... .|++ + . |
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~ 528 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLS 528 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccc
Confidence 99763 333222222222 111 111111 1111 1 1 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048308 267 NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITAT 335 (413)
Q Consensus 267 ~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~ 335 (413)
+|+++||.++.+++++|+.++.+++|.+|+||++||++++++ .+++.+++++++++++++..|+.+|++
T Consensus 529 fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~ 608 (1391)
T KOG0065|consen 529 FYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGI 608 (1391)
T ss_pred ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHH
Confidence 799999999999999999999999999999999999999998 346788999999999999999999998
Q ss_pred HHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc------------------c-------------
Q 048308 336 IVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT------------------C------------- 376 (413)
Q Consensus 336 ~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~------------------~------------- 376 (413)
.++... .++||+||+|++|+||+.||||+|+.|||.+.+. |
T Consensus 609 ~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~ 688 (1391)
T KOG0065|consen 609 LLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVS 688 (1391)
T ss_pred HHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEe
Confidence 876644 5899999999999999999999999999988542 1
Q ss_pred -------c--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048308 377 -------Y--AGLSHQIICVAALAVMLLGSRLAAYDALMGIG 409 (413)
Q Consensus 377 -------~--~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~ 409 (413)
. ....+.|+|++|++|+.++|.++..+++.+++
T Consensus 689 g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 689 GRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 1 12235799999999999999999999998865
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=261.92 Aligned_cols=155 Identities=31% Similarity=0.507 Sum_probs=125.7
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lT 75 (413)
++|+|||+++++||+++|+||||||||||||||+++.. ..+|+|.++|.... ...|+++|+|+|+..+||++|
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlT 93 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT 93 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecccccccccch
Confidence 47999999999999999999999999999999999987 46799999997552 246788999999999999999
Q ss_pred HHHHHHHHHH--------------------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 76 VTETLVFIAL--------------------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 76 v~e~l~f~~~--------------------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|.||+..+-. .++ .+|||+|||+|+.+|+++++|||||+||++...
T Consensus 94 vleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 94 VLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred HHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHH
Confidence 9999987631 111 128999999999999999999999999999998
Q ss_pred HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+++ +-.+|-+.-.- .|++.-..+.||.++-+..|..
T Consensus 174 EVL~vm~~LA~eGmTMivV------------THEM~FAr~VadrviFmd~G~i 214 (240)
T COG1126 174 EVLDVMKDLAEEGMTMIIV------------THEMGFAREVADRVIFMDQGKI 214 (240)
T ss_pred HHHHHHHHHHHcCCeEEEE------------echhHHHHHhhheEEEeeCCEE
Confidence 884 44467665552 2333334566777777766643
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-33 Score=274.57 Aligned_cols=120 Identities=40% Similarity=0.589 Sum_probs=110.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|||+++++||+++++||||||||||+|+|+|+.++ .+|+|.++|.+..+ ..++.+||++|++.+++.+||+|
T Consensus 20 ~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e 97 (293)
T COG1131 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHH
Confidence 79999999999999999999999999999999999984 78999999987653 56778999999999999999999
Q ss_pred HHHHHHHcCCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFRLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+|.|.+.++.+ +||++||++|+.+|+++||||||+|||+.++.++
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 99998776532 1799999999999999999999999999999887
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2.2e-32 Score=252.99 Aligned_cols=160 Identities=34% Similarity=0.515 Sum_probs=129.6
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h----hccccEEEEecCCccCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R----TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~v~q~~~~~~~ 73 (413)
+|++|||+.|++||+++||||||||||||||+|.|+++ +.+|+|.++|.++. + ..+++.|+++|+-.+|..
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss 99 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS 99 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc
Confidence 37999999999999999999999999999999999998 47799999998763 1 356789999999999999
Q ss_pred CCHHHHHHHHHHc--CCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 74 LTVTETLVFIALF--RLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 74 lTv~e~l~f~~~~--~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||.||+.|..+- ++| .||+++|||++.||+++|+||||+|||+.
T Consensus 100 ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI 179 (263)
T COG1127 100 LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179 (263)
T ss_pred cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcc
Confidence 9999999885321 122 18999999999999999999999999999
Q ss_pred HHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 119 IAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 119 ~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
++..+- +.+. |-+++. +.|+.+...+.||++..+.+|.+...++
T Consensus 180 ~a~~~~~LI~~L~~~lg~T~i~------------VTHDl~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 180 SAGVIDELIRELNDALGLTVIM------------VTHDLDSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred hHHHHHHHHHHHHHhhCCEEEE------------EECChHHHHhhhceEEEEeCCEEEEeCC
Confidence 997761 1111 555554 4566667777778777777776644333
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.9e-32 Score=267.06 Aligned_cols=137 Identities=31% Similarity=0.479 Sum_probs=121.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|||+.+ +.+|+|.++|+..++ ..+|.+++|+|+..++|+|||+||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 6899999999999999999999999999999999987 478999999998864 457889999999999999999999
Q ss_pred HHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308 80 LVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--- 123 (413)
Q Consensus 80 l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--- 123 (413)
+.|..+.+. + +|||++||||+.+|++++||||.|+||+..+.++
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 999877642 1 1899999999999999999999999999998766
Q ss_pred -----------------------------HHhcCCcEEEecCcchH
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~ 140 (413)
.+|++|++.-.|++.++
T Consensus 176 i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 36667777777777665
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-32 Score=256.19 Aligned_cols=152 Identities=28% Similarity=0.420 Sum_probs=130.8
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.+. ......++||+|++.++|.+||+||+
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhh
Confidence 37999999999999999999999999999999999987 4779999999988 44466799999999999999999999
Q ss_pred HHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH----
Q 048308 81 VFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---- 123 (413)
Q Consensus 81 ~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---- 123 (413)
.++...+. + +|||+|||+|+.+|++|+||||++.||+.|+.++
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l 173 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH
Confidence 98765531 1 1899999999999999999999999999999888
Q ss_pred --HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308 124 --LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167 (413)
Q Consensus 124 --~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~ 167 (413)
+.-..++++-+ +.|+..+..-.+|.++.+.++
T Consensus 174 ~~lw~~~~~Tvll------------VTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 174 LRLWEETRKTVLL------------VTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHhhCCEEEE------------EeCCHHHHHhhhCEEEEecCC
Confidence 23346788777 456777777778888887764
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.5e-32 Score=269.69 Aligned_cols=153 Identities=31% Similarity=0.480 Sum_probs=130.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+++|+|+.+++||+++|+||||||||||||+|||..+ +.+|+|.++|+++.. ..+|.+++|+|+-.+||+|||+||
T Consensus 20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~N 97 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEEN 97 (352)
T ss_pred EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHH
Confidence 6899999999999999999999999999999999987 477999999999864 578899999999999999999999
Q ss_pred HHHHHHcCC--c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308 80 LVFIALFRL--P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-- 123 (413)
Q Consensus 80 l~f~~~~~~--~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-- 123 (413)
+.|..+.+. + .|||++||+|+.+|++|+||||.|+||..-+.++
T Consensus 98 VafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~ 177 (352)
T COG3842 98 VAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177 (352)
T ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHH
Confidence 999877322 1 1799999999999999999999999999988776
Q ss_pred ------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308 124 ------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL 164 (413)
Q Consensus 124 ------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 164 (413)
.+|++|++.-.|+++++ |..|...-.|||+=+.
T Consensus 178 Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 47777887777777665 3345445556665443
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-31 Score=245.87 Aligned_cols=175 Identities=28% Similarity=0.418 Sum_probs=132.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~ 73 (413)
++|+|||+.+++||+++|+||||||||||||+|+|+.+ +.+|+|.+||.... +.+++++|+++|+..+.+.
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 37999999999999999999999999999999999876 57799999997653 2457789999999999999
Q ss_pred CCHHHHHHHHHHcCC-----------------------------------------chhHHHHHHHHhhCCCEEEEeCCC
Q 048308 74 LTVTETLVFIALFRL-----------------------------------------PIKRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 74 lTv~e~l~f~~~~~~-----------------------------------------~~krvsia~~l~~~p~llllDEPt 112 (413)
+||.||+.....-+. ..|||+|||+|+.+|++++.|||+
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 999999975432111 118999999999999999999999
Q ss_pred CCCCHHHHHHHH------HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHH
Q 048308 113 SGLDSTIAKQIL------LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLIS 186 (413)
Q Consensus 113 sgLD~~~~~~i~------ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (413)
++||+.++.+|+ --.+|.++-.-- |......+.||.++.+.+|++.-+++.. +...+.+.+
T Consensus 176 asLDp~~a~~Vm~~l~~in~~~g~Tvi~nL------------H~vdlA~~Y~~Riigl~~G~ivfDg~~~-el~~~~~~~ 242 (258)
T COG3638 176 ASLDPESAKKVMDILKDINQEDGITVIVNL------------HQVDLAKKYADRIIGLKAGRIVFDGPAS-ELTDEALDE 242 (258)
T ss_pred cccChhhHHHHHHHHHHHHHHcCCEEEEEe------------chHHHHHHHHhhheEecCCcEEEeCChh-hhhHHHHHH
Confidence 999999999995 112566554421 2333345667777777777654333221 123344555
Q ss_pred HHHh
Q 048308 187 AYKS 190 (413)
Q Consensus 187 ~~~~ 190 (413)
-|..
T Consensus 243 iYg~ 246 (258)
T COG3638 243 IYGN 246 (258)
T ss_pred Hhcc
Confidence 5554
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=241.45 Aligned_cols=159 Identities=28% Similarity=0.411 Sum_probs=136.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
.++||||+++.||+++|+|||||||||+||+|++++. +.+|.|.++|.+..+ ..++++|.++.+..++..||++|
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 6899999999999999999999999999999999998 477999999987642 56888999998889999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-- 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-- 123 (413)
||.|.+.+. +. +|||+|||||++||++++|||||||||..+...+
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d 174 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD 174 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH
Confidence 999876442 11 1899999999999999999999999999999887
Q ss_pred ---HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 124 ---LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 124 ---~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
.+-++|+++-+.+ |.+++....||.++.+.+|++.-.++
T Consensus 175 fi~q~k~egr~viFSS------------H~m~EvealCDrvivlh~Gevv~~gs 216 (245)
T COG4555 175 FIKQLKNEGRAVIFSS------------HIMQEVEALCDRVIVLHKGEVVLEGS 216 (245)
T ss_pred HHHHhhcCCcEEEEec------------ccHHHHHHhhheEEEEecCcEEEcCC
Confidence 2455799887754 67777778899999999998765444
No 18
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=6.3e-31 Score=242.45 Aligned_cols=121 Identities=32% Similarity=0.526 Sum_probs=107.6
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT 75 (413)
++|+|||+++++||+++|+|+||||||||||+|+|..+ ..+|+|.++|+++.. ..++.++||||....|+.||
T Consensus 17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LT 94 (237)
T COG0410 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLT 94 (237)
T ss_pred eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCc
Confidence 47999999999999999999999999999999999987 358999999998752 35667999999999999999
Q ss_pred HHHHHHHHHHcCC----------------c-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 VTETLVFIALFRL----------------P-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 v~e~l~f~~~~~~----------------~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
|+|||..++..+- | .|.++|||||+.+|++|+|||||.||-+.-..+
T Consensus 95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~ 174 (237)
T COG0410 95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174 (237)
T ss_pred HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHH
Confidence 9999997654321 1 168999999999999999999999999999988
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
|
T Consensus 175 I 175 (237)
T COG0410 175 I 175 (237)
T ss_pred H
Confidence 8
No 19
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8e-31 Score=238.44 Aligned_cols=122 Identities=24% Similarity=0.384 Sum_probs=107.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccCh------hccccEEEEecCCccC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFY 71 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~ 71 (413)
++|+|||+.+++++++|++||||||||||||++.++... .+.+|+|.++|+.+.. ..|+.+|.|+|.+.-|
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF 100 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF 100 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence 479999999999999999999999999999999887542 2688999999987632 4688999999999999
Q ss_pred CCCCHHHHHHHHHHcCC-------------------------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 72 LHLTVTETLVFIALFRL-------------------------------------PIKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~~~-------------------------------------~~krvsia~~l~~~p~llllDEPtsg 114 (413)
| +|++||+.|..++.. ..||+.|||+|+.+|++|+||||||+
T Consensus 101 p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA 179 (253)
T COG1117 101 P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179 (253)
T ss_pred C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc
Confidence 8 999999999755421 01899999999999999999999999
Q ss_pred CCHHHHHHH
Q 048308 115 LDSTIAKQI 123 (413)
Q Consensus 115 LD~~~~~~i 123 (413)
||+.++.+|
T Consensus 180 LDPIsT~kI 188 (253)
T COG1117 180 LDPISTLKI 188 (253)
T ss_pred cCchhHHHH
Confidence 999999887
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=2.2e-31 Score=252.68 Aligned_cols=175 Identities=28% Similarity=0.389 Sum_probs=139.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.+|+|+|+++++||+++|+||||||||||||+|+|.+++ .+|+|.++|+++.+ ...+.++||+|.....+.+||
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 379999999999999999999999999999999999874 67999999998753 566789999999988899999
Q ss_pred HHHHHHHHHcCC-------------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 77 TETLVFIALFRL-------------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 77 ~e~l~f~~~~~~-------------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
+|.+.+...-.. .+||+.||++|+.+|++|+||||||.||...
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 999876421100 1289999999999999999999999999999
Q ss_pred HHHHH-----Hh-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHHH
Q 048308 120 AKQIL-----LN-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYK 189 (413)
Q Consensus 120 ~~~i~-----ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (413)
+.+++ +. .+|.++-. .-|+.......||+++.+.+|++...+.+.+..+.+.+.+.|.
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~------------vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVM------------VLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEE------------EecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence 99985 22 34775544 2355555567789999999888776666555445555555554
No 21
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.1e-30 Score=241.61 Aligned_cols=152 Identities=36% Similarity=0.546 Sum_probs=121.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h-----hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R-----TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|.|.++|.+.. + ..++.+|||+|+..++|+
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 79999999999999999999999999999999999874 7899999997653 1 234579999999999999
Q ss_pred CCHHHHHHHHHHc-------------------CC--------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 74 LTVTETLVFIALF-------------------RL--------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 74 lTv~e~l~f~~~~-------------------~~--------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
+||+||+.+...+ ++ | +|||+|||||+.+|++++.||||.+||+.+
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 9999999864321 11 1 189999999999999999999999999999
Q ss_pred HHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 120 AKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 120 ~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
+..|+ +.. .|+++-.-+. +... ...||.++.+.+|.
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTH------------d~~l-A~~~dr~i~l~dG~ 219 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTH------------DPEL-AKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcC------------CHHH-HHhCCEEEEEeCCe
Confidence 99995 222 3878777443 3221 23466666666554
No 22
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=6.6e-31 Score=244.51 Aligned_cols=121 Identities=32% Similarity=0.538 Sum_probs=108.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++++|+|+++++||+++++|||||||||+||+|.++.+ +.+|+|.+||++..+ ..|+.+|||-|+-.+||++||
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 37899999999999999999999999999999999998 478999999998753 568899999999999999999
Q ss_pred HHHHHHHHHc-------------------CC---------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 77 TETLVFIALF-------------------RL---------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~---------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
.||+.+.-.+ ++ | .|||.+||||+.+|+++++|||+++||+.++.
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 9999775332 11 1 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
++
T Consensus 173 ~l 174 (309)
T COG1125 173 QL 174 (309)
T ss_pred HH
Confidence 77
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=248.49 Aligned_cols=120 Identities=36% Similarity=0.564 Sum_probs=107.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc---ccCh--hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PLSR--TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--~~~~~~~~v~q~~~~~~~lTv 76 (413)
.++|||+.|+.||++|++|||||||||||++|||+.. +..|.|.+||+ +.++ ...|++|||+|+..+|++|||
T Consensus 17 a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtV 94 (345)
T COG1118 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV 94 (345)
T ss_pred ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcccchH
Confidence 5789999999999999999999999999999999987 47799999999 4433 346789999999999999999
Q ss_pred HHHHHHHHHcCC---c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 77 TETLVFIALFRL---P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 77 ~e~l~f~~~~~~---~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
.||+.|+...+. + +|||++||+|+..|++|+||||+++||..-+.
T Consensus 95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred HhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 999999875541 1 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
++
T Consensus 175 ~l 176 (345)
T COG1118 175 EL 176 (345)
T ss_pred HH
Confidence 77
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=5.3e-30 Score=252.48 Aligned_cols=120 Identities=29% Similarity=0.500 Sum_probs=106.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.+||++|+..+++.+||+|
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e 99 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHH
Confidence 7899999999999999999999999999999999987 467999999987642 34677999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++.|.+... .+ +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l 177 (306)
T PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177 (306)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence 998754321 11 1899999999999999999999999999999887
No 25
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=246.85 Aligned_cols=120 Identities=29% Similarity=0.405 Sum_probs=107.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|||++|++||+.+|+|.||||||||+|+|+++.. +.+|+|.++|.++. ...|+++|+++|+..++...
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 6899999999999999999999999999999999987 47899999997653 14577899999999999999
Q ss_pred CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||.||+.|...+. .| +|||.|||||+.+|++|++|||||+||+.++.
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 9999999876442 11 28999999999999999999999999999999
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
.|
T Consensus 179 sI 180 (339)
T COG1135 179 SI 180 (339)
T ss_pred HH
Confidence 88
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.1e-30 Score=255.83 Aligned_cols=120 Identities=29% Similarity=0.519 Sum_probs=107.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+... ..++.++||+|+..++|++||+||
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN 96 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence 6899999999999999999999999999999999987 478999999987643 345789999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.|....+ .+ +|||+|||+|+.+|++++|||||+|||+.++.++
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l 173 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 99875421 11 1899999999999999999999999999999877
No 27
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2e-30 Score=240.83 Aligned_cols=173 Identities=25% Similarity=0.401 Sum_probs=144.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+++|||+++++||+++|+||||||||||+|+|+|.++| .+|+|.++|+++.. ..+..++--+|...+|++|||
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTV 96 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTV 96 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcH
Confidence 68999999999999999999999999999999999984 77999999998752 235568899999999999999
Q ss_pred HHHHHHHHHcCC--------c-------------------------------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308 77 TETLVFIALFRL--------P-------------------------------------IKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 77 ~e~l~f~~~~~~--------~-------------------------------------~krvsia~~l~~~p~llllDEP 111 (413)
.||+..++..+. + .||+.||++|+++|++|+||||
T Consensus 97 lENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 97 LENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred HHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCc
Confidence 999988754221 0 1899999999999999999999
Q ss_pred CCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHH
Q 048308 112 ASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLI 185 (413)
Q Consensus 112 tsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (413)
.+||.+..+.++. +-+ .|.++.. +.|++...++.||++..+..|++..++++++....+...
T Consensus 177 aAGln~~e~~~l~~~i~~i~~~~g~till------------IEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~Vi 244 (250)
T COG0411 177 AAGLNPEETEELAELIRELRDRGGVTILL------------IEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVI 244 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCcEEEE------------EEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhH
Confidence 9999999999884 223 3466555 568999999999999999999987777665555556666
Q ss_pred HHH
Q 048308 186 SAY 188 (413)
Q Consensus 186 ~~~ 188 (413)
++|
T Consensus 245 eAY 247 (250)
T COG0411 245 EAY 247 (250)
T ss_pred HHh
Confidence 666
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=1.3e-29 Score=254.06 Aligned_cols=137 Identities=34% Similarity=0.508 Sum_probs=118.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|++... ..++.++||+|+..+||++||+||
T Consensus 19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (353)
T TIGR03265 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADN 96 (353)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHH
Confidence 6899999999999999999999999999999999987 477999999987642 346789999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--- 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--- 123 (413)
+.|....+ .+ +|||+|||+|+.+|++++|||||+|||..++.++
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (353)
T TIGR03265 97 IAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176 (353)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 99875421 11 1899999999999999999999999999999877
Q ss_pred -----------------------------HHhcCCcEEEecCcchH
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~ 140 (413)
++|++|+++..|++++.
T Consensus 177 L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 177 IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 46677777777776555
No 29
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1.3e-29 Score=249.29 Aligned_cols=120 Identities=33% Similarity=0.499 Sum_probs=105.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|.+... ..++.++|++|++.+++.+||+|
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 7899999999999999999999999999999999987 467999999987632 34567999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++.+.+..+ .+ +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 998754321 10 1899999999999999999999999999999887
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-29 Score=252.50 Aligned_cols=120 Identities=27% Similarity=0.496 Sum_probs=107.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.+... ..++.++||+|+..++|++||+||
T Consensus 21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 467999999987643 345789999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.|....+ .+ +|||+|||+|+.+|++++|||||+|||+.++.++
T Consensus 99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 99875421 11 1899999999999999999999999999999887
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=238.76 Aligned_cols=155 Identities=32% Similarity=0.468 Sum_probs=122.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 7899999999999999999999999999999999987 467999999987532 2356799999999999999
Q ss_pred CHHHHHHHHHHcC--Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 75 TVTETLVFIALFR--LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 75 Tv~e~l~f~~~~~--~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+|++.+..... .+ +||++||++|+.+|++++|||||+|||+.++
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 172 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 9999998753211 00 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+. +.. +|.++..-+ |+.....+.+|+++.+.+|...
T Consensus 173 ~~l~~~l~~~~~~~~~tvi~vs------------H~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 173 GVIDDLIRSLKKELGLTSIMVT------------HDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred HHHHHHHHHHHHhcCcEEEEEe------------cCHHHHHHhcCEEEEEECCeEE
Confidence 9883 222 366655532 2333333456777777666554
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=8.9e-30 Score=238.25 Aligned_cols=131 Identities=30% Similarity=0.495 Sum_probs=109.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 7899999999999999999999999999999999987 467999999987532 1356799999999999999
Q ss_pred CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+|++.+..... ++ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 9999998753211 10 18999999999999999999999999999998
Q ss_pred HHH-----HhcCCcEEEe
Q 048308 122 QIL-----LNSEGNSLHV 134 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~ 134 (413)
.+. +.++|.++..
T Consensus 176 ~l~~~l~~~~~~~~tii~ 193 (216)
T TIGR00960 176 DIMRLFEEFNRRGTTVLV 193 (216)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 883 2234665554
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=3.1e-29 Score=250.18 Aligned_cols=120 Identities=32% Similarity=0.554 Sum_probs=106.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e 133 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE 133 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHH
Confidence 78999999999999999999999999999999999874 67999999987642 34667999999999999999999
Q ss_pred HHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++.+.... +++ +||+.||++|+.+|++++|||||+|||+.++.++
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 99864322 111 1899999999999999999999999999999888
No 34
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=234.10 Aligned_cols=121 Identities=32% Similarity=0.586 Sum_probs=111.1
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++++|+|+.++||||.+++|||||||||.+++|.|.++ +.+|.|.++|.+.+...+.+|||.|++.-+++.+||+|.|
T Consensus 16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql 93 (300)
T COG4152 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL 93 (300)
T ss_pred eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHH
Confidence 36899999999999999999999999999999999998 4789999999999888888999999999999999999999
Q ss_pred HHHHHcC-Cch--------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIALFR-LPI--------------------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~~~~-~~~--------------------------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.|.+.++ +|+ |++.+-.+++++|++++||||+||||+.+++-+
T Consensus 94 ~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elL 169 (300)
T COG4152 94 KYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169 (300)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHH
Confidence 9987664 221 789999999999999999999999999998665
No 35
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=3.4e-29 Score=249.86 Aligned_cols=156 Identities=24% Similarity=0.331 Sum_probs=124.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|||+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..++.++|++|+..+++.+
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 7999999999999999999999999999999999987 467999999987642 1356799999999999999
Q ss_pred CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+||+.+..... .+ +||+.|||+|+.+|++|+|||||||||+.++.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 9999998864321 11 18999999999999999999999999999999
Q ss_pred HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.++ +..+ |.++..- .|+.+.....||+++.+.+|++..
T Consensus 178 ~i~~lL~~l~~~~g~tiili------------TH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 178 SILELLKEINRRLGLTILLI------------THEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEE
Confidence 883 2222 6555442 244444445567777776666543
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=3.5e-29 Score=252.53 Aligned_cols=120 Identities=31% Similarity=0.487 Sum_probs=106.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.+... ..++.++||+|+..++|++||+||
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFEN 106 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 467999999997643 346789999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.|....+ .+ +|||+|||+|+.+|++++|||||+|||..++..+
T Consensus 107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 99865321 11 1899999999999999999999999999999887
No 37
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2e-29 Score=234.86 Aligned_cols=153 Identities=27% Similarity=0.470 Sum_probs=121.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+.....++.++|++|+..+++.+||+|++.
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence 6899999999999999999999999999999999987 46899999998765545667999999999999999999998
Q ss_pred HHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+....+ .+ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~ 172 (210)
T cd03269 93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR 172 (210)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 754321 10 18999999999999999999999999999998883
Q ss_pred -HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 125 -LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 125 -ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
+.++|.++..-+ |+.+...+.+|+++.+.+|.
T Consensus 173 ~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 173 ELARAGKTVILST------------HQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred HHHHCCCEEEEEC------------CCHHHHHHhhhEEEEEeCCE
Confidence 223566665533 23222234466666665554
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=4e-29 Score=250.58 Aligned_cols=120 Identities=36% Similarity=0.600 Sum_probs=106.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++... ..++.++||+|+..+++++||+||
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence 6899999999999999999999999999999999987 467999999987643 335679999999999999999999
Q ss_pred HHHHHHc-----CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 80 LVFIALF-----RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 80 l~f~~~~-----~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
+.|.... +.+ +||++|||+|+.+|++++|||||+|||+.++.+
T Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~ 174 (353)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174 (353)
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 9986432 111 189999999999999999999999999999987
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
+
T Consensus 175 l 175 (353)
T PRK10851 175 L 175 (353)
T ss_pred H
Confidence 7
No 39
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=237.90 Aligned_cols=152 Identities=28% Similarity=0.439 Sum_probs=122.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhc-cccEEEEecCCc--cCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV-KRKTGFVAHSNV--FYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e 78 (413)
+|+|||+++++||+++|+||||||||||+|+|.|+++ +.+|+|.++|.+..+.. +..+|||||... .-.-+||+|
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d 96 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD 96 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH
Confidence 7999999999999999999999999999999999987 47899999999876532 457999999542 223479999
Q ss_pred HHHHHHHcCC-------------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 79 TLVFIALFRL-------------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 79 ~l~f~~~~~~-------------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
.+......+. ..|||-|||||+.+|++|+|||||+|+|+.++.
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~ 176 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence 9876532211 018999999999999999999999999999999
Q ss_pred HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308 122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~ 167 (413)
.++ +-.+|++|.. +.|+.......+|.++-+...
T Consensus 177 ~i~~lL~~l~~eg~tIl~------------vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 177 EIYDLLKELRQEGKTVLM------------VTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred HHHHHHHHHHHCCCEEEE------------EeCCcHHhHhhCCEEEEEcCe
Confidence 985 3446998877 345665666667777766543
No 40
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.8e-29 Score=230.92 Aligned_cols=123 Identities=37% Similarity=0.511 Sum_probs=108.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++. +.+|+|.++|.+... ..++.++|++|++.+++.+||+
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 101 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVR 101 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHH
Confidence 789999999999999999999999999999999998732 578999999987642 3456799999999999999999
Q ss_pred HHHHHHHHcCC----------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 78 ETLVFIALFRL----------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 78 e~l~f~~~~~~----------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
|++.+....+. .+||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 102 ~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 102 ETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred HHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence 99998764321 128999999999999999999999999999999883
No 41
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=4.3e-29 Score=234.13 Aligned_cols=155 Identities=28% Similarity=0.412 Sum_probs=121.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 7899999999999999999999999999999999987 468999999987642 34567999999999999999999
Q ss_pred HHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 79 TLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 79 ~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
|+.+.... +++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 174 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 99875321 111 18999999999999999999999999999998883
Q ss_pred ---HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 ---LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 ---ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
-+.++.++..-+ |+.+.....+|+++.+.+|...
T Consensus 175 ~l~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 175 LILEVRKGRSIILTT------------HSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred HHHHHhcCCEEEEEc------------CCHHHHHHhcCEEEEEECCEEE
Confidence 122445544422 3333333446666666666554
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.6e-29 Score=251.33 Aligned_cols=120 Identities=33% Similarity=0.480 Sum_probs=106.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.+... ..++.++||+|+..+||++||+||
T Consensus 34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 467999999987643 356789999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.|....+ .+ +||++|||+|+.+|++|+|||||+|||..++.++
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 99875421 11 1899999999999999999999999999999776
No 43
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=3e-29 Score=234.20 Aligned_cols=131 Identities=33% Similarity=0.496 Sum_probs=110.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 7899999999999999999999999999999999987 467999999987642 2346799999999999999
Q ss_pred CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+|++.+.... +++ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 174 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 999999875321 110 18999999999999999999999999999999
Q ss_pred HHH-----HhcCCcEEEe
Q 048308 122 QIL-----LNSEGNSLHV 134 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~ 134 (413)
.+. +.++|+++..
T Consensus 175 ~l~~~l~~~~~~~~tii~ 192 (214)
T TIGR02673 175 RILDLLKRLNKRGTTVIV 192 (214)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 883 2235766555
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.6e-29 Score=232.69 Aligned_cols=155 Identities=29% Similarity=0.407 Sum_probs=123.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH
Confidence 7899999999999999999999999999999999987 467999999976532 33557999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
++.+....+ .+ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (220)
T cd03265 93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 998753221 10 18999999999999999999999999999998883
Q ss_pred ----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 ----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 ----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.++ |.++..-+ |+.+...+.+|+++.+.+|.+.
T Consensus 173 ~l~~~~~~~~~tvi~~t------------H~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 173 YIEKLKEEFGMTILLTT------------HYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred HHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEeCCEEE
Confidence 2233 66555532 3333334556777777777654
No 45
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=8.1e-29 Score=248.61 Aligned_cols=120 Identities=26% Similarity=0.397 Sum_probs=106.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hc----cccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TV----KRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~----~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. .. ++.++||+|+..++++
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 6899999999999999999999999999999999987 478999999987642 12 5689999999999999
Q ss_pred CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+||+.|..... ++ +||+.|||+|+.+|++++|||||+|||+.++
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 99999998864321 10 1899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
..+
T Consensus 166 ~~l 168 (363)
T TIGR01186 166 DSM 168 (363)
T ss_pred HHH
Confidence 887
No 46
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.96 E-value=4.3e-29 Score=233.84 Aligned_cols=131 Identities=36% Similarity=0.552 Sum_probs=110.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 7899999999999999999999999999999999987 467999999987532 124579999999999999
Q ss_pred CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+|++.+....+ +. +||++||++|+.+|++++|||||+|||+.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 99999998754321 10 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEe
Q 048308 121 KQIL-----LNS-EGNSLHV 134 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~ 134 (413)
..+. +.. +|.++..
T Consensus 177 ~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEE
Confidence 8883 223 3766655
No 47
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=4.5e-29 Score=223.27 Aligned_cols=136 Identities=29% Similarity=0.418 Sum_probs=118.4
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~ 73 (413)
++|+|||+.+++||++-|.||||||||||+|.|.+..+ +..|+|.+||+++. +..+|++|.|+||..++++
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence 37999999999999999999999999999999999887 47899999999864 2467899999999999999
Q ss_pred CCHHHHHHHHHHcCC--------------------------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFRL--------------------------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~~--------------------------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
.||.||+.|+..... | +||++||||++.+|++|+.||||-+||+.++
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 999999999764321 1 2899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcc
Q 048308 121 KQIL-----LNSEGNSLHVGKGD 138 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~ 138 (413)
.+|+ +...|.+|-.-+.+
T Consensus 174 ~~im~lfeeinr~GtTVl~ATHd 196 (223)
T COG2884 174 WEIMRLFEEINRLGTTVLMATHD 196 (223)
T ss_pred HHHHHHHHHHhhcCcEEEEEecc
Confidence 9995 33468887775543
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.9e-29 Score=234.33 Aligned_cols=153 Identities=32% Similarity=0.460 Sum_probs=120.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++|+
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 92 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAEN 92 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHH
Confidence 7899999999999999999999999999999999987 467999999987642 234579999999989999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-- 124 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-- 124 (413)
+.+..... ++ +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~ 172 (213)
T cd03259 93 IAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172 (213)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 98753211 10 18999999999999999999999999999998883
Q ss_pred ---Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 125 ---LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 125 ---ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
+.+ +|+++..-+ |+.....+.+|+++.+.+|.
T Consensus 173 l~~~~~~~~~tii~~s------------H~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 173 LKELQRELGITTIYVT------------HDQEEALALADRIAVMNEGR 208 (213)
T ss_pred HHHHHHHcCCEEEEEe------------cCHHHHHHhcCEEEEEECCE
Confidence 222 377665533 23222234456666655553
No 49
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=3.4e-29 Score=232.99 Aligned_cols=153 Identities=30% Similarity=0.445 Sum_probs=121.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++|++|++.+++.+||+|+
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence 7899999999999999999999999999999999987 468999999987642 335579999999999999999999
Q ss_pred HHHHHHcC---------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308 80 LVFIALFR---------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L 125 (413)
Q Consensus 80 l~f~~~~~---------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l 125 (413)
+.+..... +. +||++||++|+.+|++++|||||+|||+.++..+. +
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 93 LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 97754211 10 18999999999999999999999999999998883 2
Q ss_pred hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 126 NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 126 l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
.++|.++..-+ |+.+...+.+|+++.+.+|+
T Consensus 173 ~~~~~tii~~t------------H~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 173 RDQGITVLISS------------HLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred HHCCCEEEEEc------------CCHHHHHHhcCEEEEEECCE
Confidence 23576655532 33333334566666665554
No 50
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=8.5e-29 Score=248.78 Aligned_cols=120 Identities=32% Similarity=0.534 Sum_probs=106.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCee--EEEEECCcccCh--hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR--GNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+ |+|.++|.+... ..++.++||+|+..++|++||+
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~ 97 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence 68999999999999999999999999999999999874 56 999999987643 3457899999999999999999
Q ss_pred HHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 78 ETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 78 e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
||+.|....+ .+ +|||+|||+|+.+|++++|||||+|||+.++.++
T Consensus 98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 9999875421 11 1899999999999999999999999999999887
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=4.2e-29 Score=236.08 Aligned_cols=155 Identities=26% Similarity=0.449 Sum_probs=123.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... . .++.++|++|+..+++.+||
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 7899999999999999999999999999999999987 467999999987532 1 23469999999999999999
Q ss_pred HHHHHHHHHcC-C------------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALFR-L------------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~~-~------------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+|++.+....+ . . +||++||++|+.+|++++|||||+|||..++..+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 99998753211 0 0 1899999999999999999999999999999887
Q ss_pred H-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 124 L-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 124 ~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
. +.++|.++..-+ |+.......+|+++.+.+|+..
T Consensus 173 ~~~l~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 173 QKIIKILKDRGIGVLITD------------HNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHHHHHHHCCCEEEEEe------------CCHHHHHHhCCEEEEEECCeEE
Confidence 3 223576665532 3333334567777777777654
No 52
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=1.2e-28 Score=242.54 Aligned_cols=120 Identities=31% Similarity=0.525 Sum_probs=104.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence 7899999999999999999999999999999999987 467999999987532 34567999999999999999999
Q ss_pred HHHHHHHc-C------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALF-R------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~-~------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++.+.... + ++ +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 97 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 99754321 1 10 1899999999999999999999999999999887
No 53
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=1.1e-28 Score=231.65 Aligned_cols=156 Identities=32% Similarity=0.483 Sum_probs=122.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+++|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.+... ..++.++|++|+..+++.+|+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 6899999999999999999999999999999999987 467999999987532 124569999999999999999
Q ss_pred HHHHHHHHHcC------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 77 TETLVFIALFR------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 77 ~e~l~f~~~~~------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+||+.+..... ++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 99998753211 00 18999999999999999999999999999998883
Q ss_pred -----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 -----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 -----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+..+|.++..-+ |+.....+.+|+++.+.+|+...
T Consensus 173 ~~l~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 173 EAIRELRDEGVTILLVE------------QNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred HHHHHHHHCCCEEEEEe------------CCHHHHHHhccEEEEeeCCeEEE
Confidence 223566665533 23223345567777777766543
No 54
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=3.6e-29 Score=228.48 Aligned_cols=131 Identities=26% Similarity=0.449 Sum_probs=110.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+++|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 5899999999999999999999999999999999987 467999999987642 2356799999984 57889
Q ss_pred CCHHHHHHHHHHcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 74 LTVTETLVFIALFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 74 lTv~e~l~f~~~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
+|++||+.+...+. ..+||++||++|+.+|++++|||||+|||+.++..+. +..+|.++..
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999998765322 2349999999999999999999999999999999883 2234666555
No 55
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.5e-30 Score=230.28 Aligned_cols=138 Identities=25% Similarity=0.468 Sum_probs=118.1
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT 75 (413)
++++|||+.+++||+++++|||||||||.+.++.|+.+ +.+|.|.++|.+++. ..+..+||.+|+...|..||
T Consensus 18 ~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~Lt 95 (243)
T COG1137 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLT 95 (243)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCc
Confidence 37899999999999999999999999999999999987 467999999998753 23346999999999999999
Q ss_pred HHHHHHHHHHcCC-----------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 76 VTETLVFIALFRL-----------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 76 v~e~l~f~~~~~~-----------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|+||+......+- .+||+.|||+|+.+|+.++||||++|.|+.+.
T Consensus 96 V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV 175 (243)
T COG1137 96 VEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175 (243)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhH
Confidence 9999976543321 12899999999999999999999999999998
Q ss_pred HHH-------------------------------HHhcCCcEEEecCcchH
Q 048308 121 KQI-------------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 121 ~~i-------------------------------~ll~~G~~v~~G~~~~~ 140 (413)
.+| .++++|+++..|+++++
T Consensus 176 ~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 176 IDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 777 36677777777777655
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=1.3e-28 Score=242.13 Aligned_cols=120 Identities=33% Similarity=0.545 Sum_probs=106.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 7899999999999999999999999999999999987 467999999987642 34567999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++.+.+.+. .+ +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 998755331 11 1899999999999999999999999999999887
No 57
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-28 Score=226.09 Aligned_cols=134 Identities=43% Similarity=0.656 Sum_probs=113.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.....+.+|+|.++|++.....++.++|++|++.+++.+|++|++.
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR 101 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence 78999999999999999999999999999999998642357899999998765445567999999998999999999999
Q ss_pred HHHHc-CCc---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEec
Q 048308 82 FIALF-RLP---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVG 135 (413)
Q Consensus 82 f~~~~-~~~---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G 135 (413)
+.... .++ +||+.||++|+.+|++++|||||+|||..++..+. +-.+|.++..-
T Consensus 102 ~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiiv 164 (192)
T cd03232 102 FSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164 (192)
T ss_pred HHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 86543 232 49999999999999999999999999999999883 22346665553
No 58
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=248.30 Aligned_cols=120 Identities=33% Similarity=0.508 Sum_probs=105.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|.++ +.+|+|.++|++... ..++.++||+|+..+++++||+||
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 467999999987643 235679999999999999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.|....+ +. +||++||++|+.+|++++|||||+|||..++..+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l 172 (369)
T PRK11000 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 98864321 10 1899999999999999999999999999998776
No 59
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=6.6e-29 Score=231.82 Aligned_cols=131 Identities=31% Similarity=0.457 Sum_probs=110.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 7899999999999999999999999999999999987 467999999986532 2356799999999999999
Q ss_pred CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|++||+.+....+ ++ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 9999998753211 10 18999999999999999999999999999999
Q ss_pred HHH-----HhcCCcEEEe
Q 048308 122 QIL-----LNSEGNSLHV 134 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~ 134 (413)
.+. +.++|.++..
T Consensus 174 ~~~~~l~~~~~~~~tiii 191 (214)
T cd03292 174 EIMNLLKKINKAGTTVVV 191 (214)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 883 2235666554
No 60
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-28 Score=229.32 Aligned_cols=157 Identities=31% Similarity=0.388 Sum_probs=122.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC--ccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN--VFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~--~~~~~l 74 (413)
+|+|||+++.+||.++|+|+||||||||.++|+|..+ +.+|+|.++|.+..+ .+.+.+.+|+||+ .+.|..
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 7999999999999999999999999999999999987 478999999987654 3577899999997 577999
Q ss_pred CHHHHHHHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 75 TVTETLVFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 75 Tv~e~l~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
||++.|.=+.. .++| .||++|||||+.+|++|++|||||+||+..+.+
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~ 179 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ 179 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHH
Confidence 99988754332 1222 289999999999999999999999999999999
Q ss_pred HH--Hh--c-C-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 123 IL--LN--S-E-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 123 i~--ll--~-~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
|+ +. . + |-+.-+ +.|+.......||.++.+.+|...+.
T Consensus 180 IlnlL~~l~~~~~lt~l~------------IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 180 ILNLLLELKKERGLTYLF------------ISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHHHHHHHhcCceEEE------------EeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 84 11 1 2 222222 23344344455777777777765543
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.5e-28 Score=233.65 Aligned_cols=155 Identities=28% Similarity=0.448 Sum_probs=121.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+||+|+
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence 7899999999999999999999999999999999987 467999999987642 234579999999999999999999
Q ss_pred HHHHHHcC-----------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 80 LVFIALFR-----------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 80 l~f~~~~~-----------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
+.+..... +. +||+.||++|+.+|++++|||||+|||+.++..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (239)
T cd03296 95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174 (239)
T ss_pred HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 98753211 00 189999999999999999999999999999988
Q ss_pred HH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 123 IL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 123 i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+. +.. +|.++..-+ |+.....+.+|+++.+.+|...
T Consensus 175 l~~~l~~~~~~~~~tvii~s------------H~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 175 LRRWLRRLHDELHVTTVFVT------------HDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEe------------CCHHHHHHhCCEEEEEECCeEE
Confidence 83 222 366655432 2222223456777767666553
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=5.5e-29 Score=233.13 Aligned_cols=131 Identities=31% Similarity=0.508 Sum_probs=110.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+++|+|+++++||+++|+|+||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 7999999999999999999999999999999999987 467999999987642 34567999999999999999999
Q ss_pred HHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 79 TLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 79 ~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
++.+....+ ++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 997653211 10 18999999999999999999999999999998883
Q ss_pred ----HhcCCcEEEe
Q 048308 125 ----LNSEGNSLHV 134 (413)
Q Consensus 125 ----ll~~G~~v~~ 134 (413)
+.++|.++..
T Consensus 178 ~l~~~~~~~~tii~ 191 (218)
T cd03266 178 FIRQLRALGKCILF 191 (218)
T ss_pred HHHHHHHCCCEEEE
Confidence 2235766655
No 63
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.4e-28 Score=232.80 Aligned_cols=156 Identities=28% Similarity=0.363 Sum_probs=123.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+... ..++.++|++|++.+++.+
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 78999999999999999999999999999999999874 67999999987642 1246799999999999999
Q ss_pred CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|++||+.+....+ ++ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 9999998753211 10 18999999999999999999999999999999
Q ss_pred HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.+. +.++ |.++..-+ |+.......+|+++.+.+|....
T Consensus 178 ~l~~~l~~~~~~~~~tvii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 178 SILALLRDINRELGLTIVLIT------------HEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence 883 2233 77665533 23222334567777777776543
No 64
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.1e-29 Score=225.67 Aligned_cols=128 Identities=36% Similarity=0.562 Sum_probs=109.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++|
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH
Confidence 6899999999999999999999999999999999987 467999999987642 34567999999999999999999
Q ss_pred HHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 79 TLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 79 ~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
++.++ ...+||++||++|+.+|++++|||||+|||+.++..+. +.++|.++..
T Consensus 93 ~~~LS---~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 150 (173)
T cd03230 93 NLKLS---GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150 (173)
T ss_pred HhhcC---HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 98621 12349999999999999999999999999999999883 3345665544
No 65
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=5.1e-29 Score=231.42 Aligned_cols=131 Identities=31% Similarity=0.447 Sum_probs=108.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCc-cCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNV-FYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~-~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+.. .+..+||+||
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 7899999999999999999999999999999999987 468999999987643 34567999999964 3456799999
Q ss_pred HHHHHHc---------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308 80 LVFIALF---------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L 125 (413)
Q Consensus 80 l~f~~~~---------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l 125 (413)
+.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+. +
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9874321 110 18999999999999999999999999999998883 2
Q ss_pred hcCCcEEEe
Q 048308 126 NSEGNSLHV 134 (413)
Q Consensus 126 l~~G~~v~~ 134 (413)
.++|.++..
T Consensus 173 ~~~~~tii~ 181 (205)
T cd03226 173 AAQGKAVIV 181 (205)
T ss_pred HHCCCEEEE
Confidence 245765555
No 66
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-28 Score=239.37 Aligned_cols=157 Identities=28% Similarity=0.409 Sum_probs=123.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------hhccccEEEEecCC--ccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------RTVKRKTGFVAHSN--VFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~--~~~ 71 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ...++.++||+|++ .++
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 7999999999999999999999999999999999987 46799999998753 12456799999985 445
Q ss_pred CCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 72 LHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+ .||.|++.|.... ++. +||++||++|+.+|++++|||||+|||+
T Consensus 99 ~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~ 177 (288)
T PRK13643 99 E-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177 (288)
T ss_pred c-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH
Confidence 4 6999999885421 111 1899999999999999999999999999
Q ss_pred HHHHHH-------------------------------HHhcCCcEEEecCcchHh---HHHHhcCCCCCCCCChhHHH
Q 048308 118 TIAKQI-------------------------------LLNSEGNSLHVGKGDGVM---SYFVGIGFEPSAAMNPSDFL 161 (413)
Q Consensus 118 ~~~~~i-------------------------------~ll~~G~~v~~G~~~~~~---~~f~~~g~~~p~~~n~ad~~ 161 (413)
.++..+ ++|++|++++.|++++.. ..++..|+.+|.....++.+
T Consensus 178 ~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999776 356777777777766652 23445566666554444444
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-28 Score=245.44 Aligned_cols=155 Identities=25% Similarity=0.340 Sum_probs=122.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 7899999999999999999999999999999999987 467999999987642 1356799999999999999
Q ss_pred CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+||+.+..... ++ +||+.||++|+.+|++++|||||+|||+.++.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9999998764211 10 18999999999999999999999999999998
Q ss_pred HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
.+. +..+ |.++..-+ |+.....+.||+++.+.+|...
T Consensus 178 ~l~~~L~~l~~~~g~tiilvt------------H~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 178 SILELLKDINRELGLTIVLIT------------HEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence 883 2222 66555422 3333333456666666666543
No 68
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=2e-28 Score=232.09 Aligned_cols=155 Identities=28% Similarity=0.428 Sum_probs=122.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.+... . .++.++|++|+..+++.+||
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 6899999999999999999999999999999999987 467999999987642 1 23569999999999999999
Q ss_pred HHHHHHHHHcC-----------------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 77 TETLVFIALFR-----------------------------LP--------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 77 ~e~l~f~~~~~-----------------------------~~--------------~krvsia~~l~~~p~llllDEPts 113 (413)
+|++.+..... ++ +||++||++|+.+|++++|||||+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 172 (236)
T cd03219 93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172 (236)
T ss_pred HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99998754211 00 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
|||..++..+. +..+|+++..-+ |+.....+.+|+++.+.+|...
T Consensus 173 ~LD~~~~~~l~~~l~~~~~~~~tii~vs------------H~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 173 GLNPEETEELAELIRELRERGITVLLVE------------HDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEe------------cCHHHHHHhCCEEEEEeCCEEE
Confidence 99999998883 223576655522 3333334556777777776654
No 69
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.6e-28 Score=229.05 Aligned_cols=153 Identities=27% Similarity=0.427 Sum_probs=120.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... .++.++|++|+..+++.+|++|++.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccCcEEEEecccccccCCCHHHHHH
Confidence 7899999999999999999999999999999999987 467999999987653 3567999999999999999999998
Q ss_pred HHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+....+ +. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 175 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL 175 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 753211 10 18999999999999999999999999999999883
Q ss_pred -Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh--CCcc
Q 048308 125 -LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA--NGVV 169 (413)
Q Consensus 125 -ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~--~~~~ 169 (413)
+.. +|.++..-+ |+.....+.+|+++.+. +|++
T Consensus 176 ~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 176 DIWRETGKTVLLVT------------HDIDEAVFLADRVVVLSARPGRI 212 (220)
T ss_pred HHHHHcCCEEEEEe------------cCHHHHHHhCCEEEEEECCCCEE
Confidence 222 366665532 23222234466666665 4544
No 70
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=2.7e-28 Score=227.63 Aligned_cols=154 Identities=26% Similarity=0.409 Sum_probs=120.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+++|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++||
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN 92 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHH
Confidence 7899999999999999999999999999999999987 467999999987643 234569999999988999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-- 124 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-- 124 (413)
+.+..... +. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 172 (213)
T cd03301 93 IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE 172 (213)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 98753211 10 18999999999999999999999999999999884
Q ss_pred ---Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 125 ---LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 125 ---ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+.. +|.++..-+ |+.+...+.+|+++.+.+|+.
T Consensus 173 l~~~~~~~~~tvi~~s------------H~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 173 LKRLQQRLGTTTIYVT------------HDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred HHHHHHHcCCEEEEEe------------CCHHHHHHhcCeEEEEECCEE
Confidence 122 366655532 233233344566655555543
No 71
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.4e-28 Score=230.37 Aligned_cols=131 Identities=34% Similarity=0.556 Sum_probs=109.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh-------c-cccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-------V-KRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~-~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.... . ++.++|++|+..+++.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 7999999999999999999999999999999999987 4689999999876421 1 2569999999989999
Q ss_pred CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+|++||+.+.... +++ +||++||++|+.+|++++|||||+|||+.++
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 9999999874321 110 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEe
Q 048308 121 KQIL-----LNS-EGNSLHV 134 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~ 134 (413)
..+. +.. +|.++..
T Consensus 182 ~~l~~~l~~~~~~~g~tvii 201 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLV 201 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 9883 222 4766555
No 72
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.1e-28 Score=232.45 Aligned_cols=158 Identities=28% Similarity=0.454 Sum_probs=125.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 7899999999999999999999999999999999987 467999999987542 2345799999999999999
Q ss_pred CHHHHHHHHHH---------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 75 TVTETLVFIAL---------------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 75 Tv~e~l~f~~~---------------------------~~~~--------------~krvsia~~l~~~p~llllDEPts 113 (413)
||+|++.+... +++. +||++||++|+.+|++++|||||+
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99999976321 0010 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 114 GLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
|||+.++..+. +.. +|+++..-+ |+.+...+.+|+++.+.+|.....+
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~t------------H~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 174 SLDPASSRQVMDLLKRINREEGITVIVSL------------HQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999998883 222 377665532 4444444568888888888765433
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=2.1e-28 Score=230.63 Aligned_cols=153 Identities=25% Similarity=0.332 Sum_probs=119.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC-----CCCCeeEEEEECCcccCh------hccccEEEEecCCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL-----STGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVF 70 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~ 70 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+ + +.+|+|.++|.+... ..++.++|++|+..+
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 789999999999999999999999999999999998 5 467999999987532 235679999999888
Q ss_pred CCCCCHHHHHHHHHHc--------------------C-------Cc---------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 71 YLHLTVTETLVFIALF--------------------R-------LP---------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 71 ~~~lTv~e~l~f~~~~--------------------~-------~~---------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+ .+||+||+.+.... + .+ +||++||++|+.+|++++|||||+|
T Consensus 93 ~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 93 F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8 89999999764211 0 00 1899999999999999999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
||+.++..+. +..+ .++..- .|+.+.....+|+++.+.+|+..
T Consensus 172 LD~~~~~~l~~~l~~~~~~-~tii~~------------sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 172 LDPISTAKIEELIAELKKE-YTIVIV------------THNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred CCHHHHHHHHHHHHHHhhC-cEEEEE------------eccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999883 1223 444442 23333334556777777777653
No 74
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=1.4e-28 Score=231.27 Aligned_cols=156 Identities=25% Similarity=0.418 Sum_probs=122.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 7899999999999999999999999999999999987 468999999986532 1356799999999888899
Q ss_pred CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|++|++.+.... ++. +||++||++|+.+|++++|||||+|||..++.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (222)
T PRK10908 95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 (222)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 999999875321 110 18999999999999999999999999999998
Q ss_pred HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.+. +..+|.++..-+ |+.....+.+|+++.+.+|...+
T Consensus 175 ~l~~~l~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 175 GILRLFEEFNRVGVTVLMAT------------HDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEcc
Confidence 873 223466655522 33333345577777776665443
No 75
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.7e-28 Score=235.17 Aligned_cols=156 Identities=24% Similarity=0.337 Sum_probs=122.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... . .++.++|++|+..+++.
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 6899999999999999999999999999999999987 467999999987532 1 13579999999999999
Q ss_pred CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+|++.+.... ++. +||++||++|+.+|++++|||||+|||..++
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 9999999875321 110 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
..+. +.+ +|.++..-+ |+.+...+.+|+++.+.+|....
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~t------------H~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFIT------------HDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence 8883 222 366665533 33333345577777777776543
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3.1e-28 Score=231.51 Aligned_cols=156 Identities=28% Similarity=0.444 Sum_probs=123.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~~lT 75 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 7899999999999999999999999999999999987 467999999987542 23557999999999999999
Q ss_pred HHHHHHHHHH-c-CC------------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 76 VTETLVFIAL-F-RL------------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 76 v~e~l~f~~~-~-~~------------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|+|++.+... . +. . +||++||++|+.+|++++|||||+|||..++.
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 173 (240)
T PRK09493 94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173 (240)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9999987531 1 10 0 18999999999999999999999999999998
Q ss_pred HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.+. +.++|+++..- .|+.+...+.+|+++.+.+|....
T Consensus 174 ~l~~~l~~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 174 EVLKVMQDLAEEGMTMVIV------------THEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred HHHHHHHHHHHcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEe
Confidence 883 22356665552 234333345577777777776543
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=2.4e-28 Score=232.52 Aligned_cols=158 Identities=28% Similarity=0.439 Sum_probs=125.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 7999999999999999999999999999999999987 467999999987532 1356799999999999999
Q ss_pred CHHHHHHHHHH---------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 75 TVTETLVFIAL---------------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 75 Tv~e~l~f~~~---------------------------~~~~--------------~krvsia~~l~~~p~llllDEPts 113 (413)
||+||+.+... +++. +||++||++|+.+|++++|||||+
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 174 (243)
T TIGR02315 95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174 (243)
T ss_pred cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999975310 0110 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 114 GLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
|||+.++..+. +.+ +|.++..- .|+.+...+.+|+++.+.+|.....+
T Consensus 175 ~LD~~~~~~l~~~l~~~~~~~~~tiii~------------tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 175 SLDPKTSKQVMDYLKRINKEDGITVIIN------------LHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEE------------eCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999998883 223 36665552 24444445667888888888765443
No 78
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4e-28 Score=237.12 Aligned_cols=120 Identities=28% Similarity=0.464 Sum_probs=102.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCc-cCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNV-FYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~-~~~~l 74 (413)
+|+|||+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++||+|++. .+...
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 7999999999999999999999999999999999987 467999999987642 33567999999863 33467
Q ss_pred CHHHHHHHHHH-------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 75 TVTETLVFIAL-------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 75 Tv~e~l~f~~~-------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+|++.|... ++++ +||+.||++|+.+|++++|||||+|||+.+
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 99999987431 1221 189999999999999999999999999999
Q ss_pred HHHH
Q 048308 120 AKQI 123 (413)
Q Consensus 120 ~~~i 123 (413)
+.++
T Consensus 180 ~~~l 183 (287)
T PRK13637 180 RDEI 183 (287)
T ss_pred HHHH
Confidence 9887
No 79
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=3.4e-28 Score=232.53 Aligned_cols=156 Identities=29% Similarity=0.439 Sum_probs=122.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------------hccccEEEEecCCc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------------TVKRKTGFVAHSNV 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------------~~~~~~~~v~q~~~ 69 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 7899999999999999999999999999999999987 467999999986531 23457999999999
Q ss_pred cCCCCCHHHHHHHHHH-c-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 70 FYLHLTVTETLVFIAL-F-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 70 ~~~~lTv~e~l~f~~~-~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
+++.+||+||+.+... . ++. +||++||++|+.+|++++|||||+||
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L 175 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 9999999999976321 0 110 18999999999999999999999999
Q ss_pred CHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 116 DSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 116 D~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|+.++..+. +..+|.++..-+ |+.+...+.+|+++.+.+|....
T Consensus 176 D~~~~~~l~~~l~~~~~~~~tvi~~t------------H~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 176 DPELVGEVLNTIRQLAQEKRTMVIVT------------HEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence 999998884 234576665532 33333335577777777776543
No 80
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=2.3e-28 Score=225.48 Aligned_cols=131 Identities=46% Similarity=0.709 Sum_probs=113.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL--STGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+++|+|+++++||+++|+||||||||||+|+|+|.+ + +.+|+|.++|++... ..++.++|++|+..+++.+|++|
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 789999999999999999999999999999999998 6 467999999987754 34567999999999999999999
Q ss_pred HHHHHHHc-CCc---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 79 TLVFIALF-RLP---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 79 ~l~f~~~~-~~~---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
++.+.... .++ +||+.||++|+.+|++++|||||+|||..++..+. +..+|+++..
T Consensus 102 ~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 166 (194)
T cd03213 102 TLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166 (194)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99886643 332 48999999999999999999999999999998883 2234776655
No 81
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.4e-28 Score=237.98 Aligned_cols=119 Identities=31% Similarity=0.528 Sum_probs=101.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCC--ccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSN--VFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~--~~~ 71 (413)
+|+|||+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.++||+|+. .++
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 7999999999999999999999999999999999987 467999999987631 3356799999985 344
Q ss_pred CCCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 72 LHLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 72 ~~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
..||+||+.|... ++++ +||++||++|+.+|++++|||||+|||+
T Consensus 100 -~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 100 -EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred -hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 5799999987532 1221 1899999999999999999999999999
Q ss_pred HHHHHH
Q 048308 118 TIAKQI 123 (413)
Q Consensus 118 ~~~~~i 123 (413)
.++..+
T Consensus 179 ~~~~~l 184 (290)
T PRK13634 179 KGRKEM 184 (290)
T ss_pred HHHHHH
Confidence 999877
No 82
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1.1e-28 Score=229.92 Aligned_cols=132 Identities=33% Similarity=0.526 Sum_probs=108.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+.. .++.+|+
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 7899999999999999999999999999999999987 467999999986532 34567999999974 4667899
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.+.... +++ +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 9999874321 110 1899999999999999999999999999999888
Q ss_pred H-----HhcCCcEEEec
Q 048308 124 L-----LNSEGNSLHVG 135 (413)
Q Consensus 124 ~-----ll~~G~~v~~G 135 (413)
. +..+|.++..-
T Consensus 174 ~~~l~~~~~~~~tvi~~ 190 (211)
T cd03225 174 LELLKKLKAEGKTIIIV 190 (211)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 3 22357666553
No 83
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-28 Score=233.12 Aligned_cols=156 Identities=28% Similarity=0.437 Sum_probs=124.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 7899999999999999999999999999999999987 467999999987642 235579999999999999999
Q ss_pred HHHHHHHHHcC------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 77 TETLVFIALFR------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 77 ~e~l~f~~~~~------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+||+.+..... +. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~ 177 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177 (237)
T ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence 99997642110 10 18999999999999999999999999999998883
Q ss_pred -----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 -----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 -----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+.++|.++..-+ |+.......+|+++.+.+|+...
T Consensus 178 ~~l~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 217 (237)
T PRK11614 178 DTIEQLREQGMTIFLVE------------QNANQALKLADRGYVLENGHVVL 217 (237)
T ss_pred HHHHHHHHCCCEEEEEe------------CcHHHHHhhCCEEEEEeCCEEEe
Confidence 234577766532 33333345678888877776543
No 84
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.5e-29 Score=226.45 Aligned_cols=130 Identities=32% Similarity=0.527 Sum_probs=109.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~~lT 75 (413)
+++|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+|
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT 92 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCC
Confidence 6899999999999999999999999999999999987 468999999986532 34567999999998888999
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcC-CcEEEe
Q 048308 76 VTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSE-GNSLHV 134 (413)
Q Consensus 76 v~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~-G~~v~~ 134 (413)
++|++.+. .-...+||++||++|+.+|++++|||||+|||+.++..+. +.++ |+++..
T Consensus 93 ~~~~l~~~-lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 156 (178)
T cd03229 93 VLENIALG-LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156 (178)
T ss_pred HHHheeec-CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99998754 1112359999999999999999999999999999999884 2334 565544
No 85
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=233.10 Aligned_cols=120 Identities=26% Similarity=0.382 Sum_probs=103.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCC-ccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSN-VFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~-~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+..+ ..++.++|++|++ ..++..||
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 7999999999999999999999999999999999987 467999999987642 3456799999996 46778899
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.|.... ++. +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 9999875321 110 1899999999999999999999999999999887
No 86
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=2.4e-28 Score=227.91 Aligned_cols=131 Identities=34% Similarity=0.552 Sum_probs=109.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~~lT 75 (413)
+|+|+|++++|||+++|+||||||||||+|+|+|.++ +.+|+|.++|++.. ...++.++|++|+..+++.+|
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 7899999999999999999999999999999999987 46799999998752 124567999999999999999
Q ss_pred HHHHHHHHHH-c-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 76 VTETLVFIAL-F-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 76 v~e~l~f~~~-~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
++|++.+... . +++ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 9999976421 0 110 18999999999999999999999999999998
Q ss_pred HHH-----HhcCCcEEEe
Q 048308 122 QIL-----LNSEGNSLHV 134 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~ 134 (413)
.+. +.++|.++..
T Consensus 173 ~l~~~l~~~~~~~~tvi~ 190 (213)
T cd03262 173 EVLDVMKDLAEEGMTMVV 190 (213)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 873 2235766555
No 87
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=7.9e-28 Score=226.28 Aligned_cols=155 Identities=28% Similarity=0.422 Sum_probs=124.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+......+.++|++|++.+++.+|++|++.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 6899999999999999999999999999999999987 46799999998765332357999999999899999999997
Q ss_pred HHHHcC---------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc
Q 048308 82 FIALFR---------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS 127 (413)
Q Consensus 82 f~~~~~---------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~ 127 (413)
+..... +. +||++||++++.+|++++|||||+|||..++..+. +..
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 172 (223)
T TIGR03740 93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172 (223)
T ss_pred HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH
Confidence 654221 11 18999999999999999999999999999998883 223
Q ss_pred CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 128 EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 128 ~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+|.++..-+ |+.....+.+|+++.+.+|...
T Consensus 173 ~~~tiii~s------------H~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 173 QGITVILSS------------HILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CCCEEEEEc------------CCHHHHHHhcCEEEEEeCCEEE
Confidence 576655532 3333334567788777777654
No 88
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.95 E-value=2.5e-28 Score=229.94 Aligned_cols=153 Identities=29% Similarity=0.408 Sum_probs=118.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+. .+++
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 7899999999999999999999999999999999987 467999999987632 2356799999998 4667
Q ss_pred CCCHHHHHHHHHH---------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIAL---------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~---------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.+||+||+.+... ++++ +||++||++|+.+|++++|||||+|||
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 8999999865321 1111 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 117 STIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 117 ~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
+.++..+. +..+ |.++..-+ |+.+...+.+|+++.+.+|+
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 178 VSVQAQILDLLKKLQEELGLTLLFIT------------HDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEe------------CCHHHHHHhcCeEEEEeCCE
Confidence 99998883 2233 76665532 23222234466666665554
No 89
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.4e-28 Score=230.28 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=123.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh----hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++. +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL 97 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence 689999999999999999999999999999999998642 368999999987632 3456799999999888999
Q ss_pred CHHHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 75 TVTETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 75 Tv~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
||+||+.+.... ++. +||++||++|+.+|++++|||||+||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L 177 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 999999764311 110 18999999999999999999999999
Q ss_pred CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|+.++..+. -+.+|.++..- .|+.....+.+|+++.+.+|....
T Consensus 178 D~~~~~~l~~~l~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 178 DPENTAKIESLFLELKKDMTIVLV------------THFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhcCEEEEEECCeEEE
Confidence 999998883 11345555442 234333345677777777776543
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.8e-28 Score=233.20 Aligned_cols=120 Identities=31% Similarity=0.407 Sum_probs=102.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|++. .++..||
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 97 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence 7899999999999999999999999999999999987 467999999987642 23567999999862 4456899
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+|++.|.... ++. +||+.||++|+.+|++++|||||+|||+.++.++
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l 177 (274)
T PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 9999875321 110 1899999999999999999999999999999887
No 91
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=6.1e-28 Score=227.98 Aligned_cols=157 Identities=27% Similarity=0.392 Sum_probs=124.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 7899999999999999999999999999999999987 467999999987532 124579999999999999999
Q ss_pred HHHHHHHHHcCC-----------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 77 TETLVFIALFRL-----------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 77 ~e~l~f~~~~~~-----------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
+|++.+...... + +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 172 (230)
T TIGR03410 93 EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172 (230)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 999987532210 0 18999999999999999999999999999999883
Q ss_pred -H---hc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 125 -L---NS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 125 -l---l~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
+ .. .|.++..-+ |+.+...+.+|+++.+.+|+....
T Consensus 173 ~l~~~~~~~~~tii~~s------------H~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVE------------QYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred HHHHHHHcCCcEEEEEe------------CCHHHHHHhCCEEEEEECCEEEEE
Confidence 2 22 266665532 333333456788888887765443
No 92
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.2e-28 Score=229.36 Aligned_cols=156 Identities=28% Similarity=0.456 Sum_probs=123.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+||+
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 7899999999999999999999999999999999987 467999999987532 3355799999999999999999
Q ss_pred HHHHHHHH-------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 78 ETLVFIAL-------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 78 e~l~f~~~-------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
||+.+... ++++ +||++||++|+.+|++++|||||+|||+.++..
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 99976421 1121 179999999999999999999999999999988
Q ss_pred HH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 123 IL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 123 i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+. +..+ |.++..-+ |+.+.....+|+++.+.+|.+..
T Consensus 174 l~~~L~~~~~~~g~tvii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 174 LQEEFKRLQQELGKTIVFVT------------HDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred HHHHHHHHHHHcCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEEE
Confidence 73 2223 77655532 33333345567777777776543
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.1e-28 Score=229.20 Aligned_cols=156 Identities=24% Similarity=0.425 Sum_probs=122.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+||
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 7899999999999999999999999999999999987 467999999987532 234679999999999999999
Q ss_pred HHHHHHHHHcC--Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 77 TETLVFIALFR--LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 77 ~e~l~f~~~~~--~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
+||+.+..... .+ +||++||++|+.+|++++|||||+|||+.++..
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 99998753221 00 189999999999999999999999999999987
Q ss_pred HH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 123 IL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 123 i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+. +.++|.++..-+ |+.....+.+|+++.+.+|+...
T Consensus 176 l~~~l~~~~~~g~tiii~s------------H~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 176 IKRIIEHLRDSGLGVLITD------------HNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred HHHHHHHHHhcCCEEEEEE------------cCHHHHHHhcCEEEEEeCCeEEe
Confidence 72 223577665533 23222334567777777776543
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.7e-28 Score=224.38 Aligned_cols=120 Identities=33% Similarity=0.527 Sum_probs=104.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+++|+|+++++| +++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 789999999999 999999999999999999999987 468999999987542 34567999999999999999999
Q ss_pred HHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 79 TLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 79 ~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
++.+.... +++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 170 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 99874321 110 18999999999999999999999999999998883
No 95
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=1.2e-27 Score=227.07 Aligned_cols=157 Identities=32% Similarity=0.428 Sum_probs=124.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ...+.++|++|+..+++.+|++|
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 6899999999999999999999999999999999987 467999999986532 22357999999998888999999
Q ss_pred HHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 79 TLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 79 ~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
++.+....+ ++ +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 997653211 10 18999999999999999999999999999999883
Q ss_pred ----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 125 ----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 125 ----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
+.+ +|.++..- .|+.+.... +|+++.+.+|......
T Consensus 174 ~l~~~~~~~~~tiii~------------sH~~~~~~~-~d~i~~l~~G~i~~~~ 214 (236)
T TIGR03864 174 HVRALCRDQGLSVLWA------------THLVDEIEA-DDRLVVLHRGRVLADG 214 (236)
T ss_pred HHHHHHHhCCCEEEEE------------ecChhhHhh-CCEEEEEeCCeEEEeC
Confidence 222 46665552 344444443 8888888888765443
No 96
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.95 E-value=1.2e-27 Score=225.57 Aligned_cols=135 Identities=38% Similarity=0.586 Sum_probs=112.0
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
++++|+|+++++||+++|+||||||||||+|+|+|.+++ .+.+|+|.++|.+... ..++.++|++|++.+++.+||+|
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 100 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE 100 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH
Confidence 378999999999999999999999999999999999862 1367999999987653 45667999999999999999999
Q ss_pred HHHHHHHcC------------------Cc-------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 79 TLVFIALFR------------------LP-------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 79 ~l~f~~~~~------------------~~-------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|+.+..... ++ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~ 180 (226)
T cd03234 101 TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180 (226)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHH
Confidence 998753211 00 18999999999999999999999999999999
Q ss_pred HHH-----HhcCCcEEEec
Q 048308 122 QIL-----LNSEGNSLHVG 135 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G 135 (413)
.+. +..+|.++..-
T Consensus 181 ~~~~~l~~~~~~~~tiii~ 199 (226)
T cd03234 181 NLVSTLSQLARRNRIVILT 199 (226)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 883 22356665553
No 97
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=9.9e-28 Score=232.17 Aligned_cols=155 Identities=25% Similarity=0.445 Sum_probs=121.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++.+
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 6899999999999999999999999999999999987 467999999987532 1245699999999999999
Q ss_pred CHHHHHHHHHHc--------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 75 TVTETLVFIALF--------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 75 Tv~e~l~f~~~~--------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+||+.+.... +++ +||+.||++|+.+|++++|||||+|||+.++
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 999999764211 111 1899999999999999999999999999999
Q ss_pred HHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 121 KQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 121 ~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+. +.++ |.++..-+ |+.+.....+|+++.+.+|...
T Consensus 180 ~~l~~~l~~~~~~~g~tiiivs------------H~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 180 GVLVKLISELNSALGVTCVVVS------------HDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred HHHHHHHHHHHHhcCcEEEEEe------------cCHHHHHHhhCEEEEEECCEEE
Confidence 9873 2233 66655532 2322333456777777776654
No 98
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.1e-28 Score=233.68 Aligned_cols=120 Identities=31% Similarity=0.417 Sum_probs=103.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCC-ccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSN-VFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~-~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|++... ..++.++|++|+. ..++..||
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 78999999999999999999999999999999999874 67999999987642 3356799999997 36677899
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999875321 110 1899999999999999999999999999999888
No 99
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=229.14 Aligned_cols=158 Identities=24% Similarity=0.353 Sum_probs=122.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++. +.+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP 98 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCC
Confidence 789999999999999999999999999999999998753 35899999998753 123557999999999999
Q ss_pred CCCHHHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 73 HLTVTETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 73 ~lTv~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPts 113 (413)
.+||+||+.+.... ++. +||+.||++|+.+|++++|||||+
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 178 (253)
T PRK14267 99 HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178 (253)
T ss_pred CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 99999999864311 110 189999999999999999999999
Q ss_pred CCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 114 GLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 114 gLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|||+.++..+. -+.+|.++..- .|+.+.....+|+++.+.+|+...
T Consensus 179 ~LD~~~~~~l~~~l~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 179 NIDPVGTAKIEELLFELKKEYTIVLV------------THSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred cCCHHHHHHHHHHHHHHhhCCEEEEE------------ECCHHHHHhhCCEEEEEECCEEEE
Confidence 99999998883 11234544442 233333345577777777776543
No 100
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.2e-28 Score=217.37 Aligned_cols=116 Identities=33% Similarity=0.478 Sum_probs=102.1
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--hhccccEEEEecCCccCCCCCHHHHHHHH
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--RTVKRKTGFVAHSNVFYLHLTVTETLVFI 83 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~f~ 83 (413)
.+..+++||++||+||||||||||||.|+|... +.+|+|++||.+.. ....|.++.++|+..+|.++||.+|+-+.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 567889999999999999999999999999987 47799999999875 35678899999999999999999999764
Q ss_pred HHc--------------------------CCc-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 84 ALF--------------------------RLP-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 84 ~~~--------------------------~~~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
..- |+| +|||++||+|+.+-+|++||||+|.||+.-+.++
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM 168 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH
Confidence 211 222 2899999999999999999999999999999877
No 101
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=230.81 Aligned_cols=154 Identities=26% Similarity=0.358 Sum_probs=119.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+.. +++..|+
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence 7899999999999999999999999999999999987 467999999987632 34567999999974 6778899
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++++.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9998764321 110 1899999999999999999999999999999988
Q ss_pred H-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 124 L-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 124 ~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
. +.. +|.++..- .|+...... +|+++.+.+|++.
T Consensus 182 ~~~L~~~~~~~~~tiiiv------------tH~~~~~~~-~d~i~~l~~G~i~ 221 (269)
T PRK13648 182 LDLVRKVKSEHNITIISI------------THDLSEAME-ADHVIVMNKGTVY 221 (269)
T ss_pred HHHHHHHHHhcCCEEEEE------------ecCchHHhc-CCEEEEEECCEEE
Confidence 3 112 26665442 233333334 6777777666543
No 102
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=237.05 Aligned_cols=119 Identities=27% Similarity=0.438 Sum_probs=101.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------------------hccccE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------------------TVKRKT 61 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------------------~~~~~~ 61 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|+++ +.+|+|.++|.+..+ ..++.+
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 7999999999999999999999999999999999987 467999999976421 235679
Q ss_pred EEEecCC--ccCCCCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCE
Q 048308 62 GFVAHSN--VFYLHLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSL 105 (413)
Q Consensus 62 ~~v~q~~--~~~~~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~l 105 (413)
+||+|++ .+++ .||+||+.|... ++++ +||++||++|+.+|++
T Consensus 119 g~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 119 SMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 4554 599999987532 1121 1899999999999999
Q ss_pred EEEeCCCCCCCHHHHHHH
Q 048308 106 LFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 106 lllDEPtsgLD~~~~~~i 123 (413)
++|||||+|||+.++..+
T Consensus 198 LLLDEPtsgLD~~~~~~l 215 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEM 215 (320)
T ss_pred EEEECCccCCCHHHHHHH
Confidence 999999999999999887
No 103
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=1.4e-27 Score=228.11 Aligned_cols=157 Identities=22% Similarity=0.310 Sum_probs=120.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+++|+|+++++||+++|+|+||||||||+|+|+|.+++. ..+|+|.++|++... ..++.++|++|+..+++
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence 689999999999999999999999999999999998742 128999999987632 23567999999988888
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+|++||+.+.... ++. +||++||++|+.+|++++|||||+|
T Consensus 96 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 96 -MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred -CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999999864321 121 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. -+.++.++..- .|+.....+.+|+++.+.+|....
T Consensus 175 LD~~~~~~l~~~l~~~~~~~tiiiv------------sH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 175 LDPIATGKIEELIQELKKKYTIVIV------------THNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHHHHHHHHhcCeEEEE------------ecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 12234444332 233333345567777777766543
No 104
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=7e-28 Score=244.72 Aligned_cols=120 Identities=26% Similarity=0.421 Sum_probs=104.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++.+||+
T Consensus 18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 95 (402)
T PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR 95 (402)
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence 7899999999999999999999999999999999987 467999999987642 3456799999999998999999
Q ss_pred HHHHHHHH-----cC-Cc-------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL-----FR-LP-------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~-----~~-~~-------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|++.+... +. .+ +||+.||++|+.+|++|+|||||+|||+.++
T Consensus 96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 175 (402)
T ss_pred HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 99976421 11 00 1899999999999999999999999999998
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
.++
T Consensus 176 ~~l 178 (402)
T PRK09536 176 VRT 178 (402)
T ss_pred HHH
Confidence 877
No 105
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=242.88 Aligned_cols=120 Identities=30% Similarity=0.430 Sum_probs=104.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|.++.. . .++.++|++|+..++++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 5899999999999999999999999999999999987 467999999987642 1 23579999999999999
Q ss_pred CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+||+.+....+ +. +||+.||++|+.+|++++|||||+|||+.++
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 99999998764321 10 1899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
.++
T Consensus 201 ~~l 203 (400)
T PRK10070 201 TEM 203 (400)
T ss_pred HHH
Confidence 887
No 106
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=2.7e-27 Score=217.26 Aligned_cols=132 Identities=33% Similarity=0.531 Sum_probs=106.9
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h----hccccEEEEecCCc-cCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R----TVKRKTGFVAHSNV-FYLH 73 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~----~~~~~~~~v~q~~~-~~~~ 73 (413)
.+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+.. + ..++.++|++|+.. .+..
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 37999999999999999999999999999999999987 46799999998753 1 23557999999963 2335
Q ss_pred CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
.||+||+.+.... +++ +||+.||++|+.+|++++|||||+|||+.++
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7999999875321 110 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEe
Q 048308 121 KQIL-----LNSEGNSLHV 134 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~ 134 (413)
..+. +.++|.++..
T Consensus 164 ~~~~~~l~~~~~~~~tili 182 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVI 182 (190)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 9883 2234665544
No 107
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=228.71 Aligned_cols=158 Identities=25% Similarity=0.343 Sum_probs=122.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|.+++. +.+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL 101 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence 789999999999999999999999999999999998742 25899999998653 124567999999988774
Q ss_pred CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+||+||+.+.... ++ + +||++||++|+.+|++++|||||+|
T Consensus 102 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~ 180 (254)
T PRK14273 102 -MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180 (254)
T ss_pred -CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 8999999874321 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
||+.++..+. -+.+|.++..- .|+.....+.+|+++.+.+|.+...
T Consensus 181 LD~~~~~~l~~~l~~~~~~~tvii~------------sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 181 LDPISTGKIEELIINLKESYTIIIV------------THNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred cCHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999998883 22345544432 2333333456777777777766443
No 108
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=3e-27 Score=218.86 Aligned_cols=131 Identities=27% Similarity=0.409 Sum_probs=110.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH
Confidence 7899999999999999999999999999999999987 467999999987642 34567999999988888999999
Q ss_pred HHHHHHHc--------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308 79 TLVFIALF--------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L 125 (413)
Q Consensus 79 ~l~f~~~~--------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l 125 (413)
++.+.... +++ +||++||++++.+|++++|||||+|||..++..+. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH 173 (200)
T ss_pred HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 99875311 111 18999999999999999999999999999999883 2
Q ss_pred hcCCcEEEe
Q 048308 126 NSEGNSLHV 134 (413)
Q Consensus 126 l~~G~~v~~ 134 (413)
..+|.++..
T Consensus 174 ~~~~~tiii 182 (200)
T PRK13540 174 RAKGGAVLL 182 (200)
T ss_pred HHcCCEEEE
Confidence 235766655
No 109
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=3.5e-28 Score=220.17 Aligned_cols=126 Identities=29% Similarity=0.468 Sum_probs=106.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+..+ ..++.++|++|+..+++ .||+
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIA 93 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHH
Confidence 7899999999999999999999999999999999987 467999999987642 34567999999988877 4999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 78 ETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 78 e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
||+ + -...+||+.||++|+.+|++++|||||+|||+.++..+. +..+|.++..
T Consensus 94 ~~l-L---S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 151 (173)
T cd03246 94 ENI-L---SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151 (173)
T ss_pred HHC-c---CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 998 1 112349999999999999999999999999999999883 2235766555
No 110
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-27 Score=233.28 Aligned_cols=119 Identities=24% Similarity=0.475 Sum_probs=101.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCC--ccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSN--VFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~--~~~ 71 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.++.. ..++.++||+|++ .++
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 8999999999999999999999999999999999987 467999999987531 3456799999985 455
Q ss_pred CCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 72 LHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+ .||+|++.|.... ++. +||++||++|+.+|++++|||||+|||+
T Consensus 100 ~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 100 E-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred h-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 4 5999999875321 111 1899999999999999999999999999
Q ss_pred HHHHHH
Q 048308 118 TIAKQI 123 (413)
Q Consensus 118 ~~~~~i 123 (413)
.++..+
T Consensus 179 ~~~~~l 184 (286)
T PRK13646 179 QSKRQV 184 (286)
T ss_pred HHHHHH
Confidence 999887
No 111
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=1.6e-27 Score=228.31 Aligned_cols=156 Identities=26% Similarity=0.379 Sum_probs=123.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------------hccccEEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------------TVKRKTGFV 64 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------------~~~~~~~~v 64 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 7899999999999999999999999999999999987 467999999986531 235679999
Q ss_pred ecCCccCCCCCHHHHHHHHHHc--------------------CCc--------------hhHHHHHHHHhhCCCEEEEeC
Q 048308 65 AHSNVFYLHLTVTETLVFIALF--------------------RLP--------------IKRVSRAQELLINPSLLFLDE 110 (413)
Q Consensus 65 ~q~~~~~~~lTv~e~l~f~~~~--------------------~~~--------------~krvsia~~l~~~p~llllDE 110 (413)
+|+..+++..|++||+.+.... +++ +||++||++|+.+|++++|||
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999874210 110 189999999999999999999
Q ss_pred CCCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 111 PASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 111 PtsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+|||+.++..+. +.+ .|.++..- .|+.+...+.+|+++.+.+|++..
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv------------sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 173 VTSALDPELVGEVLNVIRRLASEHDLTMLLV------------THEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEE------------eCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999998873 223 37665552 233333345578888887777544
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=1.4e-27 Score=227.22 Aligned_cols=157 Identities=24% Similarity=0.322 Sum_probs=123.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 7899999999999999999999999999999999987 467999999987532 123469999999999999999
Q ss_pred HHHHHHHHHc---------------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 77 TETLVFIALF---------------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 77 ~e~l~f~~~~---------------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
+||+.+.... +++ +||+.||++|+.+|++++|||||+||
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 9999874321 000 18999999999999999999999999
Q ss_pred CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
|+.++..+. -+.+|+++..-+ |+.....+.+|+++.+.+|.....
T Consensus 175 D~~~~~~l~~~l~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 175 TDEETEKTAELLKSLAGKHSVVVVE------------HDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEE------------CCHHHHHHhCCEEEEEECCeEEee
Confidence 999998883 123455544422 333333456788888877776543
No 113
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-27 Score=230.03 Aligned_cols=153 Identities=25% Similarity=0.354 Sum_probs=119.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ..++.++|++|+..+++.+||+||+.
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHH
Confidence 7899999999999999999999999999999999987 46799999987653 34567999999999999999999997
Q ss_pred HHHH-------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc-C
Q 048308 82 FIAL-------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS-E 128 (413)
Q Consensus 82 f~~~-------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~-~ 128 (413)
+... +++. +||+.||++|+.+|++++|||||+|||+.++..+. +.. +
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 6421 1111 28999999999999999999999999999998883 222 3
Q ss_pred CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 129 GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 129 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
|.++..-+ |+.....+.+|+++.+.+|.+
T Consensus 184 ~~tviivs------------Hd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 184 GFTVLLVT------------HDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred CCEEEEEe------------CCHHHHHHhCCEEEEEECCEE
Confidence 66554422 333323344666666666654
No 114
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=226.42 Aligned_cols=155 Identities=30% Similarity=0.461 Sum_probs=121.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----------hhccccEEEEecCCccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----------RTVKRKTGFVAHSNVFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----------~~~~~~~~~v~q~~~~~ 71 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.. ...++.++|++|+..++
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 7899999999999999999999999999999999987 46799999998642 12345799999999999
Q ss_pred CCCCHHHHHHHH-HH-------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 72 LHLTVTETLVFI-AL-------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 72 ~~lTv~e~l~f~-~~-------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+.+||+||+.+. .. ++++ +||++||++|+.+|++++|||||+|||.
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence 999999999642 11 1111 1899999999999999999999999999
Q ss_pred HHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 118 TIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 118 ~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
.++..+. +..+|.++..- .|+.....+.+|+++.+.+|...
T Consensus 175 ~~~~~l~~~l~~~~~~~~tii~~------------sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 175 EITAQIVSIIRELAETGITQVIV------------THEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE------------eCCHHHHHHhcCEEEEEECCEEE
Confidence 9998883 22347766552 23333334556777777666543
No 115
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-27 Score=233.84 Aligned_cols=120 Identities=29% Similarity=0.466 Sum_probs=100.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---------------------------
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------------------------- 54 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------------------------- 54 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+..
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecccccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999874 6799999876431
Q ss_pred -hhccccEEEEecCC-ccCCCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHH
Q 048308 55 -RTVKRKTGFVAHSN-VFYLHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQE 98 (413)
Q Consensus 55 -~~~~~~~~~v~q~~-~~~~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~ 98 (413)
...++.++||+|++ ..+...||+|++.|.... +++ +||++||++
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 12456799999984 334457999999875321 121 189999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 99 LLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 99 l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|+.+|++++|||||+|||+.++..+
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l 204 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEI 204 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999999999877
No 116
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=228.47 Aligned_cols=157 Identities=19% Similarity=0.293 Sum_probs=121.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|..++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP 106 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence 789999999999999999999999999999999998631 368999999987531 23567999999988887
Q ss_pred CCCHHHHHHHHHHc-------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 73 HLTVTETLVFIALF-------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 73 ~lTv~e~l~f~~~~-------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
+|++||+.+.... ++ . +||++||++|+.+|++++|||||+||
T Consensus 107 -~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 185 (258)
T PRK14268 107 -MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185 (258)
T ss_pred -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 8999999875311 11 0 18999999999999999999999999
Q ss_pred CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|..++..+. -+.+|.++..-+ |+.+...+.||+++.+.+|+...
T Consensus 186 D~~~~~~l~~~l~~l~~~~tiiivs------------H~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 186 DPISTARIEDLIMNLKKDYTIVIVT------------HNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CHHHHHHHHHHHHHHhhCCEEEEEE------------CCHHHHHHhCCEEEEEECCEEEE
Confidence 999998883 113455554422 33333345677877777776543
No 117
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=4.7e-28 Score=226.15 Aligned_cols=130 Identities=32% Similarity=0.531 Sum_probs=106.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC--CCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY--LHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~ 79 (413)
+++|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+.. ..++.++|++|+..+. ..+||+||
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhheEEeccccccccCCCCcHHHH
Confidence 7899999999999999999999999999999999987 46799999998654 3456799999997653 34899999
Q ss_pred HHHHHHc-----------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 80 LVFIALF-----------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 80 l~f~~~~-----------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
+.+.... +++ +||+.||++|+.+|++++|||||+|||+.++..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9764321 000 189999999999999999999999999999988
Q ss_pred HH-----HhcCCcEEEe
Q 048308 123 IL-----LNSEGNSLHV 134 (413)
Q Consensus 123 i~-----ll~~G~~v~~ 134 (413)
+. +.++|.++..
T Consensus 171 l~~~l~~~~~~~~tvi~ 187 (213)
T cd03235 171 IYELLRELRREGMTILV 187 (213)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 83 2235665544
No 118
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-27 Score=230.06 Aligned_cols=119 Identities=27% Similarity=0.444 Sum_probs=100.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCC--ccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSN--VFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~--~~~ 71 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+. .++
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 7999999999999999999999999999999999987 467999999987532 2356799999986 344
Q ss_pred CCCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 72 LHLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 72 ~~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+ .||+||+.+... +++. +||+.||++|+.+|++++|||||+|||+
T Consensus 100 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 100 E-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred c-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 4 699999976421 1121 1899999999999999999999999999
Q ss_pred HHHHHH
Q 048308 118 TIAKQI 123 (413)
Q Consensus 118 ~~~~~i 123 (413)
.++..+
T Consensus 179 ~~~~~l 184 (280)
T PRK13649 179 KGRKEL 184 (280)
T ss_pred HHHHHH
Confidence 999887
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-27 Score=231.08 Aligned_cols=154 Identities=26% Similarity=0.353 Sum_probs=119.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCc-cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNV-FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~-~~~~lT 75 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+.. .+...|
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 7999999999999999999999999999999999987 467999999987632 33567999999864 466789
Q ss_pred HHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 VTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 v~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
++||+.+..... .+ +||++||++|+.+|++++|||||+|||+.++..
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 999998753211 10 189999999999999999999999999999988
Q ss_pred HH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 123 IL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 123 i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+. +..+|.++..-+ |+.... ..+|+++.+.+|+..
T Consensus 175 l~~~l~~l~~~g~til~~t------------H~~~~~-~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 175 VLERIKKLHEKGKTIVYIT------------HNLEEL-HDADRIIVMDRGKIV 214 (274)
T ss_pred HHHHHHHHHhCCCEEEEEe------------cCHHHH-hhCCEEEEEECCEEE
Confidence 73 223566655532 222222 236777777666653
No 120
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.95 E-value=2.5e-27 Score=227.73 Aligned_cols=156 Identities=27% Similarity=0.438 Sum_probs=123.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------------hccccEEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------------TVKRKTGFV 64 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------------~~~~~~~~v 64 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|+
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 7899999999999999999999999999999999987 467999999976531 234679999
Q ss_pred ecCCccCCCCCHHHHHHHHHH-c-------------------CCc---------------hhHHHHHHHHhhCCCEEEEe
Q 048308 65 AHSNVFYLHLTVTETLVFIAL-F-------------------RLP---------------IKRVSRAQELLINPSLLFLD 109 (413)
Q Consensus 65 ~q~~~~~~~lTv~e~l~f~~~-~-------------------~~~---------------~krvsia~~l~~~p~llllD 109 (413)
+|+..+++.+||+||+.+... . +++ +||+.||++|+.+|++++||
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999976321 0 110 18999999999999999999
Q ss_pred CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|||+|||+.++..+. +..+|.++..-+ |+.....+.+|+++.+.+|+...
T Consensus 178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs------------H~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVT------------HEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999884 223577665532 33333345677777777776543
No 121
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.95 E-value=2.8e-27 Score=219.59 Aligned_cols=131 Identities=29% Similarity=0.445 Sum_probs=109.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h-----hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R-----TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. + ..++.++|++|+..+++.
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 7899999999999999999999999999999999987 46799999998742 1 235679999999999999
Q ss_pred CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+|++||+.+..... +. +||+.||++|+.+|++++|||||+|||+.++
T Consensus 91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR 170 (206)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence 99999998753211 10 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEe
Q 048308 121 KQIL-----LNSEGNSLHV 134 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~ 134 (413)
..+. +..+|.++-.
T Consensus 171 ~~l~~~l~~~~~~~~tii~ 189 (206)
T TIGR03608 171 DEVLDLLLELNDEGKTIII 189 (206)
T ss_pred HHHHHHHHHHHhcCCEEEE
Confidence 9883 2234665544
No 122
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=2.3e-27 Score=236.03 Aligned_cols=120 Identities=26% Similarity=0.405 Sum_probs=103.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+++|||+++++||+++|+|+||||||||+++|+|++++ .+|+|.++|.++.+ ..++.++||+|+. .++|
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 68999999999999999999999999999999999874 67999999987632 2356799999997 5788
Q ss_pred CCCHHHHHHHHHHc---------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIALF---------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~~---------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.+||+|++.+.... +++ +||+.||++|+.+|+++++||||+|||
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99999998764321 110 189999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
..++.++
T Consensus 194 ~~~~~~i 200 (331)
T PRK15079 194 VSIQAQV 200 (331)
T ss_pred HHHHHHH
Confidence 9999888
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.3e-27 Score=231.36 Aligned_cols=120 Identities=36% Similarity=0.541 Sum_probs=101.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCc-cCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNV-FYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~-~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ...++.++|++|+.. .+...
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 7899999999999999999999999999999999987 46799999998762 134567999999863 34467
Q ss_pred CHHHHHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+|++.+.... +.+ +||+.||++|+.+|++++|||||+|||+.++.
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 999999874321 111 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
.+
T Consensus 179 ~l 180 (283)
T PRK13636 179 EI 180 (283)
T ss_pred HH
Confidence 76
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=1.1e-27 Score=225.80 Aligned_cols=131 Identities=35% Similarity=0.543 Sum_probs=108.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh-------c-cccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-------V-KRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~-~~~~~~v~q~~~~~~~ 73 (413)
+++|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+.... . ++.++|++|+..+++.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 7999999999999999999999999999999999987 4679999999876321 1 2469999999989999
Q ss_pred CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+|++||+.+....+ +. +||+.||++|+.+|++++|||||+|||..++
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 99999997643211 10 1899999999999999999999999999999
Q ss_pred HHHH--H---hcC-CcEEEe
Q 048308 121 KQIL--L---NSE-GNSLHV 134 (413)
Q Consensus 121 ~~i~--l---l~~-G~~v~~ 134 (413)
..+. + .++ |.++..
T Consensus 183 ~~l~~~l~~~~~~~~~tii~ 202 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLIL 202 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEE
Confidence 9883 2 233 666555
No 125
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=2.9e-27 Score=221.86 Aligned_cols=131 Identities=37% Similarity=0.546 Sum_probs=108.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h---cc-ccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T---VK-RKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~---~~-~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... . .+ +.++|++|+..+++.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 7899999999999999999999999999999999987 467999999987532 1 12 569999999988999
Q ss_pred CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+|++.+.... +++ +||++||++|+.+|++++|||||+|||..++
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 9999999874321 110 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEe
Q 048308 121 KQIL-----LNS-EGNSLHV 134 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~ 134 (413)
..+. +.. .|.++..
T Consensus 178 ~~l~~~l~~~~~~~~~tii~ 197 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLV 197 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEE
Confidence 8883 222 3666555
No 126
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=9.2e-28 Score=218.31 Aligned_cols=119 Identities=29% Similarity=0.432 Sum_probs=101.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++ .|++|
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 93 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRN 93 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHH
Confidence 7899999999999999999999999999999999987 467999999986532 34567999999988775 69999
Q ss_pred HHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 79 TLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 79 ~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
|+ ....-...+||+.||++|+.+|++++|||||+|||..++..+.
T Consensus 94 ~i-~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~ 138 (178)
T cd03247 94 NL-GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138 (178)
T ss_pred hh-cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 98 1111122349999999999999999999999999999998873
No 127
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=2.2e-27 Score=239.37 Aligned_cols=120 Identities=25% Similarity=0.385 Sum_probs=103.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc----cC---h----h-ccccEEEEecCCc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP----LS---R----T-VKRKTGFVAHSNV 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~---~----~-~~~~~~~v~q~~~ 69 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|+++ +.+|+|.++|++ .. . . .++.++||+|+..
T Consensus 39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 6899999999999999999999999999999999987 467999999952 21 1 1 1257999999999
Q ss_pred cCCCCCHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 70 FYLHLTVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 70 ~~~~lTv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
+++.+||+||+.+....+ .+ +||+.||++|+.+|++++|||||+|||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 999999999998864321 11 189999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
+.++.++
T Consensus 197 ~~~r~~l 203 (382)
T TIGR03415 197 PLIRTQL 203 (382)
T ss_pred HHHHHHH
Confidence 9999887
No 128
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.8e-27 Score=231.16 Aligned_cols=155 Identities=25% Similarity=0.348 Sum_probs=117.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCc-cCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNV-FYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~-~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+.. .+.
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 7999999999999999999999999999999999987 478999999986531 23457999999862 233
Q ss_pred CCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 73 HLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 73 ~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
.+||+|++.+... +++. +||++||++|+.+|++++|||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 5899999986432 1121 18999999999999999999999999999
Q ss_pred HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
++..+. +.++|.++..-+ |+.+.....||+++.+.+|.+.
T Consensus 180 ~~~~l~~~l~~l~~~g~tvlivs------------H~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 180 GRKEMMQLFKDYQKAGHTVILVT------------HNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence 998873 223465554422 2322233456666666666543
No 129
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=3.1e-27 Score=223.56 Aligned_cols=152 Identities=26% Similarity=0.364 Sum_probs=118.1
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..... ...+|++|+..+++.+||+|++.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~-~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG-PDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC-hhheEEecCcccCCCCCHHHHHHH
Confidence 689999999999999999999999999999999987 46899999998764321 235899999999999999999987
Q ss_pred HHH--c-CC------------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308 83 IAL--F-RL------------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--- 124 (413)
Q Consensus 83 ~~~--~-~~------------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--- 124 (413)
... . .. + +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 521 0 01 0 18999999999999999999999999999999883
Q ss_pred --Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 125 --LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 125 --ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+.. .|.++..-+ |+.......+|+++.+.+|+.
T Consensus 158 ~~~~~~~~~tii~~s------------H~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 158 MQIWEEHRVTVLMVT------------HDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred HHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEeCCcE
Confidence 222 366655533 232223345666666666654
No 130
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.4e-27 Score=229.19 Aligned_cols=120 Identities=38% Similarity=0.538 Sum_probs=101.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCc-cCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNV-FYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~-~~~~l 74 (413)
+++|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+.. .+...
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 7899999999999999999999999999999999987 467999999987631 23567999999863 33457
Q ss_pred CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+|++.+.... ++. .||+.||++|+.+|++++|||||+|||+.++.
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 174 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 999999874311 110 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
++
T Consensus 175 ~l 176 (275)
T PRK13639 175 QI 176 (275)
T ss_pred HH
Confidence 87
No 131
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-27 Score=227.84 Aligned_cols=120 Identities=28% Similarity=0.422 Sum_probs=100.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCc-cCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNV-FYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~-~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ...++.++|++|+.. .+...
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 7899999999999999999999999999999999987 46799999998753 123457999999865 24456
Q ss_pred CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|+.|++.+.... ++. +||++||++|+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 899998764221 110 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
.+
T Consensus 174 ~l 175 (271)
T PRK13638 174 QM 175 (271)
T ss_pred HH
Confidence 87
No 132
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.2e-27 Score=223.04 Aligned_cols=152 Identities=26% Similarity=0.376 Sum_probs=118.4
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHH
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
.|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++||+.
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 38999999999999999999999999999999987 467999999987642 23467999999999999999999997
Q ss_pred HHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+....+ +. +||++||++|+.+|++++|||||+|||..++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 172 (211)
T cd03298 93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172 (211)
T ss_pred cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 643211 00 18999999999999999999999999999999883
Q ss_pred -Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 125 -LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 125 -ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+.. .|.++..-+ |+.......+|+++.+.+|+.
T Consensus 173 ~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 173 DLHAETKMTVLMVT------------HQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred HHHHhcCCEEEEEe------------cCHHHHHhhhCEEEEEECCEE
Confidence 222 376655532 333233345666666665543
No 133
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.7e-27 Score=237.51 Aligned_cols=117 Identities=28% Similarity=0.441 Sum_probs=102.0
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCCCCH
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~lTv 76 (413)
|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999987 467999999987531 235679999999999999999
Q ss_pred HHHHHHHHH-------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIAL-------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~-------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.|... +++. +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l 167 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL 167 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987521 1111 2899999999999999999999999999999877
No 134
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=228.98 Aligned_cols=156 Identities=23% Similarity=0.325 Sum_probs=123.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... . .+..++|++|+..+++.+||
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 7899999999999999999999999999999999987 467999999987642 1 23458999999999999999
Q ss_pred HHHHHHHHH----------------------------------cCCc--------------hhHHHHHHHHhhCCCEEEE
Q 048308 77 TETLVFIAL----------------------------------FRLP--------------IKRVSRAQELLINPSLLFL 108 (413)
Q Consensus 77 ~e~l~f~~~----------------------------------~~~~--------------~krvsia~~l~~~p~llll 108 (413)
+||+.+... +++. +||+.||++|+.+|++++|
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 177 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999986421 0110 1899999999999999999
Q ss_pred eCCCCCCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 109 DEPASGLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 109 DEPtsgLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||||+|||..++..+. +..+ |.++..-+ |+.+...+.+|+++.+.+|+...
T Consensus 178 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIE------------HDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCeEEe
Confidence 9999999999998883 2233 66655532 33333345678888887776543
No 135
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=7.4e-28 Score=258.55 Aligned_cols=160 Identities=26% Similarity=0.410 Sum_probs=129.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.+||+|+||||||||+|+|+|+++ +.+|+|.+||.+.++ ..|++++||+||+.+| +-|++
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~ 564 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIR 564 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHH
Confidence 7999999999999999999999999999999999998 478999999998753 5788999999999887 45999
Q ss_pred HHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+..- .++| +||+.|||+|+.+|++|+||||||+||+.+
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence 99986421 0122 289999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ 177 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~ 177 (413)
...|+ -+.+|+++..= -|..+ ...-||.++.+.+|++...+++++
T Consensus 645 E~~I~~~L~~~~~~~T~I~I------------aHRl~-ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 645 EAIILQNLLQILQGRTVIII------------AHRLS-TIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHHhcCCeEEEE------------Eccch-HhhhccEEEEccCCceeccCCHHH
Confidence 99884 23356665542 23322 235578888888888777666544
No 136
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4e-27 Score=226.41 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=118.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP 98 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCC
Confidence 789999999999999999999999999999999998642 25899999998752 134567999999999999
Q ss_pred CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.+||+||+.+... +++. +||++||++|+.+|++++|||||+|
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 178 (258)
T PRK14241 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178 (258)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 9999999976421 1110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA 165 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~ 165 (413)
||..++..+. -+.++.++..-+ |+.....+.+|+++.+.
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tviivs------------H~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 179 LDPISTLAIEDLINELKQDYTIVIVT------------HNMQQAARVSDQTAFFN 221 (258)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEe------------cCHHHHHHhCCEEEEEe
Confidence 9999998883 113455544422 23333345567766664
No 137
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.3e-27 Score=224.55 Aligned_cols=158 Identities=23% Similarity=0.298 Sum_probs=123.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE---TRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+++|+|+++++||+++|+||||||||||+|+|+|.+++.+ .+|+|.++|.+... ..++.++|++|++.+++
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFP 98 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCc
Confidence 7899999999999999999999999999999999986432 47999999987532 23557999999999999
Q ss_pred CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.+|+.||+.+.... ++ + +||++||++|+.+|++++|||||+|
T Consensus 99 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 178 (252)
T PRK14272 99 TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178 (252)
T ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999999754210 00 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH-H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL-L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~-l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. + +.+|.++..- .|+.....+.+|+++.+.+|+...
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 179 LDPASTARIEDLMTDLKKVTTIIIV------------THNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 1 1344544442 234334445678888887776543
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=3.7e-27 Score=227.64 Aligned_cols=157 Identities=23% Similarity=0.340 Sum_probs=122.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+. .+++
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 7899999999999999999999999999999999987 467999999987532 1345799999986 4677
Q ss_pred CCCHHHHHHHHHH--------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 73 HLTVTETLVFIAL--------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
.+||+|++.+... +++. +||++||++|+.+|++++|||||+|||+
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 8999999865321 1111 1899999999999999999999999999
Q ss_pred HHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 118 TIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 118 ~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
.++..+. +..+ |.++..-+ |+.....+.+|+++.+.+|.....
T Consensus 184 ~~~~~l~~~l~~~~~~~g~tiiivs------------H~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFIT------------HDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEe------------CCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9998873 2333 76665533 343334456788888877765443
No 139
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.4e-27 Score=225.30 Aligned_cols=157 Identities=22% Similarity=0.295 Sum_probs=120.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--T-GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ + .+.+|+|.++|++... ..++.++|++|+..+++
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 7899999999999999999999999999999999863 1 1368999999987532 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~------------------~~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+.... ++ .+||+.||++|+.+|++++|||||+|
T Consensus 101 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 101 -KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred -CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 5999999874211 11 01899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.+|.++..-+ |+.....+.+|+++.+.+|.+..
T Consensus 180 LD~~~~~~l~~~l~~~~~~~tvii~t------------H~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 180 LDPIATQKIEELIHELKARYTIIIVT------------HNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEE------------ecHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 113455554422 33333345567777777776543
No 140
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.1e-27 Score=216.54 Aligned_cols=126 Identities=31% Similarity=0.463 Sum_probs=105.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+... ..++.++|++|+..+++ .|+.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 78999999999999999999999999999999999874 67999999987532 34567999999987776 6999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--H--hcCCcEEEe
Q 048308 78 ETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--L--NSEGNSLHV 134 (413)
Q Consensus 78 e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--l--l~~G~~v~~ 134 (413)
||+ ++ ...+||+.||++|+.+|++++|||||+|||+.++.++. + +.+|.++..
T Consensus 94 e~l-LS---~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~ 150 (171)
T cd03228 94 ENI-LS---GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIV 150 (171)
T ss_pred HHh-hC---HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998 11 12359999999999999999999999999999998873 1 234555544
No 141
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.1e-27 Score=225.21 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=119.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL---STGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP 97 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence 689999999999999999999999999999999973 221258999999987632 23557999999988876
Q ss_pred CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.|++||+.+... ++++ +||++||++|+.+|++++|||||+|
T Consensus 98 -~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 176 (250)
T PRK14245 98 -KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176 (250)
T ss_pred -ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 699999976421 1110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. -+.+|.++..- .|+.....+.+|+++.+.+|....
T Consensus 177 LD~~~~~~l~~~l~~~~~~~tiiiv------------tH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 177 LDPISTAKVEELIHELKKDYTIVIV------------THNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999883 11345554442 233333345577777777776543
No 142
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.2e-27 Score=224.78 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=121.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|+++ +. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP 98 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCC
Confidence 7899999999999999999999999999999999975 21 257999999987531 34567999999999999
Q ss_pred CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.+|++||+.+... +++. +||++||++|+.+|++++|||||+|
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~g 178 (252)
T PRK14256 99 AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178 (252)
T ss_pred cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999999975321 1110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.++.++..- .|+.+.....+|+++.+.+|.+..
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tiiiv------------sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 179 LDPISTLKIEELIEELKEKYTIIIV------------THNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEE------------ECCHHHHHhhCCEEEEEECCEEEE
Confidence 9999998883 12234444432 233333345577777777776543
No 143
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-27 Score=228.98 Aligned_cols=155 Identities=30% Similarity=0.429 Sum_probs=123.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++.+||+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 7999999999999999999999999999999999987 467999999986532 2345799999998888889999
Q ss_pred HHHHHHHHc-------------------CCc--------------hhHHHHHHHHh------hCCCEEEEeCCCCCCCHH
Q 048308 78 ETLVFIALF-------------------RLP--------------IKRVSRAQELL------INPSLLFLDEPASGLDST 118 (413)
Q Consensus 78 e~l~f~~~~-------------------~~~--------------~krvsia~~l~------~~p~llllDEPtsgLD~~ 118 (413)
|++.+.... ++. +||++||++|+ .+|++++|||||+|||+.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 95 EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred HHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 999874321 110 18999999999 599999999999999999
Q ss_pred HHHHHH-----Hh-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 119 IAKQIL-----LN-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 119 ~~~~i~-----ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
++..+. +. ++|.++..- .|+.....+.+|+++.+.+|...
T Consensus 175 ~~~~l~~~l~~~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 175 HQHHVLRLARQLAHERGLAVIVV------------LHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE------------ECCHHHHHHhcCEEEEEECCEEE
Confidence 998873 23 356665552 24444445668888888777654
No 144
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=4.5e-27 Score=236.14 Aligned_cols=117 Identities=31% Similarity=0.406 Sum_probs=102.1
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCCCCH
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~lTv 76 (413)
|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++++||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999987 467999999987531 235679999999999999999
Q ss_pred HHHHHHHHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.|.... ++. +||++||++|+.+|++++|||||+|||..++..+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l 170 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 9999875321 111 1899999999999999999999999999999877
No 145
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=4.7e-27 Score=223.23 Aligned_cols=156 Identities=32% Similarity=0.503 Sum_probs=124.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++||
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 7899999999999999999999999999999999987 467999999987643 335679999999999999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-- 124 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-- 124 (413)
+.+....+ +. .||+.||++|+.+|++++|||||+|||..++..+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 172 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 98754221 10 18999999999999999999999999999998883
Q ss_pred ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+..+ |+++..-+ |+.......+|+++.+.+|....
T Consensus 173 l~~~~~~~~~tvli~s------------H~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 173 LRKLHDEVHVTTVFVT------------HDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred HHHHHHhcCCEEEEEe------------CCHHHHHhhcCEEEEEECCEEEE
Confidence 1223 66665533 23333345577777777776543
No 146
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4e-27 Score=229.47 Aligned_cols=122 Identities=26% Similarity=0.368 Sum_probs=103.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCC-eeEEEEECCcccCh----hccccEEEEecCCc-cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE-TRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lT 75 (413)
+++|+|+++++||+++|+||||||||||+++|+|.+++.. ..|+|.++|.+... ..++.++|++|+.. .++..|
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 101 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT 101 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence 7899999999999999999999999999999999987422 24999999987642 23567999999973 667899
Q ss_pred HHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 VTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 v~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
|+|++.|.... ++. +||+.||++|+.+|++++|||||+|||..++..
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~ 181 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 99999875321 110 189999999999999999999999999999988
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
+
T Consensus 182 l 182 (282)
T PRK13640 182 I 182 (282)
T ss_pred H
Confidence 7
No 147
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.9e-27 Score=227.26 Aligned_cols=120 Identities=30% Similarity=0.491 Sum_probs=101.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv 76 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+.. .+...||
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 7999999999999999999999999999999999987 478999999987532 34567999999963 3446799
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.|++.+.... ++. +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l 176 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999864321 110 1899999999999999999999999999999887
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.9e-27 Score=228.65 Aligned_cols=120 Identities=26% Similarity=0.393 Sum_probs=102.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCc-cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNV-FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~-~~~~lT 75 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|++. .+...|
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 8999999999999999999999999999999999987 467999999987642 23567999999863 233569
Q ss_pred HHHHHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 VTETLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 v~e~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
|.|++.|.... +.+ +||++||++|+.+|++++|||||+|||+.++..
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 99999875321 111 189999999999999999999999999999988
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
+
T Consensus 183 l 183 (280)
T PRK13633 183 V 183 (280)
T ss_pred H
Confidence 8
No 149
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4e-27 Score=228.15 Aligned_cols=154 Identities=26% Similarity=0.387 Sum_probs=120.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+.. .++.+||
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 7899999999999999999999999999999999987 467999999987642 34567999999963 6778999
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.+.... ++. +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999874321 111 1899999999999999999999999999999888
Q ss_pred H-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 124 L-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 124 ~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
. +..+ |+++..-+ |+..... .+|+++.+.+|...
T Consensus 182 ~~~l~~~~~~~~~tiii~s------------H~~~~~~-~~d~v~~l~~G~i~ 221 (271)
T PRK13632 182 KKIMVDLRKTRKKTLISIT------------HDMDEAI-LADKVIVFSEGKLI 221 (271)
T ss_pred HHHHHHHHHhcCcEEEEEE------------echhHHh-hCCEEEEEECCEEE
Confidence 3 2233 36554422 3333322 47777777777654
No 150
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.8e-27 Score=221.83 Aligned_cols=156 Identities=31% Similarity=0.452 Sum_probs=123.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+++|+|++++|||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+..+ ..++.++|++|+..+++.+|++||
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHH
Confidence 78999999999999999999999999999999999874 67999999987643 234679999999999989999999
Q ss_pred HHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308 80 LVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-- 124 (413)
Q Consensus 80 l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-- 124 (413)
+.+.... ++. +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~ 172 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 9875321 111 18999999999999999999999999999999883
Q ss_pred ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+..+ |.++..-+ |+.+...+.+|+++.+.+|....
T Consensus 173 l~~~~~~~~~tiii~s------------h~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 173 LKRLQKELGITFVFVT------------HDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred HHHHHHHcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEe
Confidence 2222 66665532 22222234567777777766543
No 151
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.2e-27 Score=223.33 Aligned_cols=158 Identities=28% Similarity=0.428 Sum_probs=126.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCC-ccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSN-VFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~-~~~~~lT 75 (413)
+|+|+|+.+++||.++|+|+||||||||+++++|++++ .+|.|.++|.+.. ...++.+|||+|++ ..+..-|
T Consensus 19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 78999999999999999999999999999999999984 6799999998754 24678899999996 3455779
Q ss_pred HHHHHHHHHHc-CC--------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 VTETLVFIALF-RL--------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 v~e~l~f~~~~-~~--------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
|.|.+.|...- +. .+|||+||.+|+.+|++++|||||||||+..+.+
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 99999986421 11 1289999999999999999999999999999999
Q ss_pred HH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 123 IL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 123 i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
++ +..+ |+++-. ..|+.....+.||+++.+..|+....+
T Consensus 177 l~~~l~~L~~~~~~tii~------------~tHd~~~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 177 LLELLKKLKEEGGKTIII------------VTHDLELVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred HHHHHHHHHhcCCCeEEE------------EeCcHHHHHhhCCEEEEEECCEEeecC
Confidence 84 3334 455544 234555556778888888887764433
No 152
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.4e-27 Score=224.47 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=119.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|++... ..++.++|++|+..+++
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence 7899999999999999999999999999999999853 21 247999999987531 23567999999988876
Q ss_pred CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+.... ++ . +||++||++|+.+|++++|||||+|
T Consensus 100 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14239 100 -MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178 (252)
T ss_pred -CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 8999999764210 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH-Hh---cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL-LN---SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~-ll---~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. ++ .+|.++..- .|+.+.....+|+++.+.+|+...
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tii~~------------sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 179 LDPISAGKIEETLLGLKDDYTMLLV------------TRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred cCHHHHHHHHHHHHHHhhCCeEEEE------------ECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 11 234444442 233333345577777777776543
No 153
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.5e-27 Score=223.91 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=123.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+.+|+|.++|++... ..++.++|++|+..+++ .||
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv 95 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSI 95 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccH
Confidence 78999999999999999999999999999999998753 2468999999987642 34567999999988886 699
Q ss_pred HHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 77 TETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 77 ~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+||+.+.... ++. +||++||++|+.+|++++|||||+|||.
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 9999764211 121 1899999999999999999999999999
Q ss_pred HHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 118 TIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 118 ~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
.++..+. + +.+|.++..- .|+.+...+.+|+++.+.+|+....
T Consensus 176 ~~~~~l~~~l~~~~~~~tiii~------------tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 176 ISSGVIEELLKELSHNLSMIMV------------THNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred HHHHHHHHHHHHHhCCCEEEEE------------ecCHHHHHhhCcEEEEEECCEEEEE
Confidence 9998883 1 1246655542 2333334466788888888876543
No 154
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.4e-27 Score=223.80 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=120.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+++|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP 97 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence 789999999999999999999999999999999986521 258999999987632 23557999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+|++||+.+.... ++ . +||+.||++|+.+|++++|||||+|
T Consensus 98 -~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 98 -MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred -ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8999999874311 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.+|.++..-+ |+.......+|+++.+.+|+...
T Consensus 177 LD~~~~~~l~~~l~~~~~~~tiii~s------------H~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 177 LDPISTLKIEELIQELKKDYTIVIVT------------HNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEE------------eCHHHHHhhCCEEEEEECCEEEE
Confidence 9999998873 113455554422 33333345567777777776543
No 155
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.9e-27 Score=224.04 Aligned_cols=157 Identities=23% Similarity=0.347 Sum_probs=120.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+++|+|+++++||+++|+||||||||||+|+|+|+.++. +.+|+|.++|.+... ..++.++|++|++.+++
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 689999999999999999999999999999999997631 268999999987531 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.|++||+.+.... ++. +||++||++|+.+|++++|||||+|
T Consensus 98 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~ 176 (250)
T PRK14262 98 -MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176 (250)
T ss_pred -ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 8999999864311 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.+|+++..-+ |+.......+|+++.+.+|....
T Consensus 177 LD~~~~~~l~~~l~~~~~~~tili~s------------H~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 177 LDPIATQRIEKLLEELSENYTIVIVT------------HNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred cCHHHHHHHHHHHHHHhcCcEEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998873 123455554422 33222335567777777776543
No 156
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=7.4e-27 Score=218.23 Aligned_cols=155 Identities=27% Similarity=0.377 Sum_probs=120.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999987 467999999987642 345679999999999999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-- 124 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-- 124 (413)
+.+..... +. +||+.||++|+.+|++++|||||+|||..++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 170 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 97642110 00 18999999999999999999999999999999883
Q ss_pred ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.++ |.++..-+ |+.+.....+|+++.+.+|+..
T Consensus 171 l~~~~~~~~~tii~vs------------h~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 171 VKQLCSERQRTLLMVT------------HHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred HHHHHHhcCCEEEEEe------------CCHHHHHhhcCeEEEEECCeEE
Confidence 2233 66655522 2333223456777776666543
No 157
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.5e-27 Score=224.46 Aligned_cols=157 Identities=18% Similarity=0.278 Sum_probs=120.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 689999999999999999999999999999999987632 267999999987632 23567999999998887
Q ss_pred CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+|++||+.+.... ++ . +||+.||++|+.+|++++|||||+|
T Consensus 99 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 177 (251)
T PRK14270 99 -MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177 (251)
T ss_pred -CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 8999999874311 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.++.++..- .|+.......+|+++.+.+|.+..
T Consensus 178 LD~~~~~~l~~~L~~~~~~~tiiiv------------sH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 178 LDPISTLKIEDLMVELKKEYTIVIV------------THNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHHHhCCeEEEE------------EcCHHHHHHhcCEEEEEECCeEEE
Confidence 9999998883 11234444332 233333345577888887776543
No 158
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=6.1e-27 Score=222.41 Aligned_cols=131 Identities=32% Similarity=0.494 Sum_probs=107.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEe-cCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVA-HSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~-q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+.. ...++.++|++ |++.+++.+|++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 7999999999999999999999999999999999987 46799999998643 23456799997 556778899999
Q ss_pred HHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 78 ETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 78 e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
|++.+..... ++ +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 9997754321 10 18999999999999999999999999999999883
Q ss_pred -----Hhc-CCcEEEe
Q 048308 125 -----LNS-EGNSLHV 134 (413)
Q Consensus 125 -----ll~-~G~~v~~ 134 (413)
+.. .|.++..
T Consensus 194 ~~l~~~~~~~~~tiii 209 (236)
T cd03267 194 NFLKEYNRERGTTVLL 209 (236)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 222 2666555
No 159
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=5.3e-27 Score=219.56 Aligned_cols=131 Identities=27% Similarity=0.337 Sum_probs=110.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+++|+|+++++||+++|+|+||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+|++|++
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence 7899999999999999999999999999999999987 467999999987653 2345689999999889999999999
Q ss_pred HHHHHc----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308 81 VFIALF----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L 125 (413)
Q Consensus 81 ~f~~~~----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l 125 (413)
.+.... +++ +||++||++++.+|++++|||||+|||..++..+. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (214)
T PRK13543 104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183 (214)
T ss_pred HHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 765321 111 18999999999999999999999999999998882 2
Q ss_pred hcCCcEEEe
Q 048308 126 NSEGNSLHV 134 (413)
Q Consensus 126 l~~G~~v~~ 134 (413)
.++|.++..
T Consensus 184 ~~~~~tiii 192 (214)
T PRK13543 184 LRGGGAALV 192 (214)
T ss_pred HhCCCEEEE
Confidence 345666655
No 160
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-27 Score=229.35 Aligned_cols=155 Identities=26% Similarity=0.390 Sum_probs=123.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|+.
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 7899999999999999999999999999999999987 467999999986532 2345699999999888889999
Q ss_pred HHHHHHHH-----c------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL-----F------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~-----~------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|++.+... . +++ +||++||++|+.+|++++|||||+|||+.++
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99987410 0 110 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+. +..+|.++-.-+ |+.+...+.+|+++.+.+|.+.
T Consensus 175 ~~l~~~l~~l~~~~~tiii~t------------H~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 175 VELMRLMRELNTQGKTVVTVL------------HDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEEE------------CCHHHHHHhcCEEEEEECCeEE
Confidence 8883 223566655522 3444445667888888777654
No 161
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.5e-27 Score=221.59 Aligned_cols=157 Identities=27% Similarity=0.427 Sum_probs=124.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|++++|||+++|+||||||||||+++|+|+++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 6899999999999999999999999999999999987 467999999987643 235679999999999999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-- 124 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-- 124 (413)
+.+..... ++ +||+.||++|+.+|++++|||||+|||..++..+.
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 171 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHH
Confidence 98753211 10 18999999999999999999999999999999883
Q ss_pred ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
+..+ |.++-.-+ |+.+.....+|+++.+..|.....
T Consensus 172 l~~~~~~~~~tili~t------------H~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 172 LKKIRKEFGVTVLHVT------------HDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred HHHHHHhcCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEEEe
Confidence 1222 76655533 333333455677777777765433
No 162
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6e-27 Score=223.86 Aligned_cols=157 Identities=21% Similarity=0.266 Sum_probs=120.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC-----hhccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~- 96 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP- 96 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-
Confidence 789999999999999999999999999999999998642 35899999998753 134567999999988887
Q ss_pred CCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 74 LTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 74 lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
.||+||+.+.... ++. +||+.||++|+.+|++++|||||+||
T Consensus 97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 176 (249)
T PRK14253 97 MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL 176 (249)
T ss_pred ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 8999999864211 110 18999999999999999999999999
Q ss_pred CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|..++..+. -+.++.++..-+ |+.....+.+|+++.+.+|++..
T Consensus 177 D~~~~~~l~~~l~~~~~~~tii~~s------------h~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 177 DPIATHKIEELMEELKKNYTIVIVT------------HSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEe------------cCHHHHHHhCCEEEEEECCEEEE
Confidence 999998873 122344444322 23333345567777777776543
No 163
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=1.3e-26 Score=214.27 Aligned_cols=131 Identities=28% Similarity=0.422 Sum_probs=109.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|++.+++.+|++|
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence 6899999999999999999999999999999999987 467999999986532 34467999999988888899999
Q ss_pred HHHHHHHcC---------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----
Q 048308 79 TLVFIALFR---------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----- 124 (413)
Q Consensus 79 ~l~f~~~~~---------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----- 124 (413)
++.+..... +. +||+.||++++.+|++++|||||+|||..++..+.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 93 NLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172 (198)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 997653221 10 18999999999999999999999999999998883
Q ss_pred HhcCCcEEEe
Q 048308 125 LNSEGNSLHV 134 (413)
Q Consensus 125 ll~~G~~v~~ 134 (413)
+..+|.++..
T Consensus 173 ~~~~~~tii~ 182 (198)
T TIGR01189 173 HLARGGIVLL 182 (198)
T ss_pred HHhCCCEEEE
Confidence 2245665544
No 164
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=6.5e-27 Score=222.53 Aligned_cols=133 Identities=30% Similarity=0.332 Sum_probs=107.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|.+... . .+..++|++|++.+++.+|+
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 94 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN 94 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence 789999999999999999999999999999999985212478999999987532 1 23348999999999999999
Q ss_pred HHHHHHHHHc--------------------------CCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 77 TETLVFIALF--------------------------RLP----------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 77 ~e~l~f~~~~--------------------------~~~----------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+|++.+.... +++ +||++||++|+.+|++++|||||+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 174 (243)
T TIGR01978 95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSG 174 (243)
T ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 9998653210 111 1799999999999999999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEe
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~ 134 (413)
||..++..+. +.++|.++..
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (243)
T TIGR01978 175 LDIDALKIVAEGINRLREPDRSFLI 199 (243)
T ss_pred CCHHHHHHHHHHHHHHHHCCcEEEE
Confidence 9999998883 2235666555
No 165
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=7e-27 Score=221.01 Aligned_cols=158 Identities=25% Similarity=0.365 Sum_probs=119.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh--hccccEEEEecCCc--cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR--TVKRKTGFVAHSNV--FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~--~~~~lT 75 (413)
+++|+|+++++||+++|+||||||||||+|+|+|..++. ..+|+|.++|++... ..++.++|++|+.. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998731 168999999987653 22357999999974 567789
Q ss_pred HHHHHHHHHH-------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 76 VTETLVFIAL-------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 76 v~e~l~f~~~-------------------~~~~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
++|++.+... ++++ +||++||++|+.+|++++|||||+|||..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 9988754321 1122 189999999999999999999999999999
Q ss_pred HHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 120 AKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 120 ~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+..+. +.. .|+++..-+ |+.+.....+|+++.+.+|.+..
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLIT------------HDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence 98773 223 366655532 33333334567777777776543
No 166
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-27 Score=249.96 Aligned_cols=158 Identities=28% Similarity=0.415 Sum_probs=123.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.||||+|++++|||++||+||||+||||+.+.|-+.++ +.+|+|.+||.++.+ .+++++|+|.|++.+|. -||
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI 558 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSI 558 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccH
Confidence 38999999999999999999999999999999999998 478999999999853 46789999999999985 599
Q ss_pred HHHHHHHHH------------c--------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL------------F--------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~------------~--------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||+.|... . ++| +||++|||||+.||.+|||||.||+||++
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDae 638 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAE 638 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchh
Confidence 999987421 0 111 38999999999999999999999999999
Q ss_pred HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
+...|. + +-+|++|..=. +..+. ..-||.++.+..|.+.+.++
T Consensus 639 SE~lVq~aL~~~~~~rTVlvIA-----HRLST--------V~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 639 SEYLVQEALDRLMQGRTVLVIA-----HRLST--------VRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred hHHHHHHHHHHhhcCCeEEEEe-----hhhhH--------hhhccEEEEEcCCeEEeccc
Confidence 998872 1 12345554311 11111 23366666777776665544
No 167
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.8e-27 Score=225.12 Aligned_cols=157 Identities=24% Similarity=0.312 Sum_probs=119.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ . +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 78999999999999999999999999999999999752 1 368999999987531 23567999999988877
Q ss_pred CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+... +++. +||++||++|+.+|++++|||||+|
T Consensus 108 -~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 186 (260)
T PRK10744 108 -MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186 (260)
T ss_pred -CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 899999976421 1110 1899999999999999999999999
Q ss_pred CCHHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. + +.+|.++..-+ |+.......+|+++.+.+|....
T Consensus 187 LD~~~~~~l~~~L~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 187 LDPISTGRIEELITELKQDYTVVIVT------------HNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998873 1 12444443322 23222234567777777776543
No 168
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.7e-27 Score=226.92 Aligned_cols=120 Identities=28% Similarity=0.454 Sum_probs=103.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv 76 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+.. .++..||
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 7999999999999999999999999999999999987 467999999987642 34567999999963 5777899
Q ss_pred HHHHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.||+.+.... +.+ +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999864321 100 1899999999999999999999999999999888
No 169
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=2.2e-27 Score=253.33 Aligned_cols=159 Identities=23% Similarity=0.328 Sum_probs=127.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.+||+||||||||||+++|+|.+ + .+|+|.+||.+..+ ..++.++||+|++.+|+ -|++
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~ 440 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLR 440 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHH
Confidence 799999999999999999999999999999999998 5 47999999988753 46778999999999885 5999
Q ss_pred HHHHHHHH-c-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-F-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++||||||+||+.+
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99987521 0 111 289999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ 177 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~ 177 (413)
+.++. + +.+++++..= .|.... ...+|.++.+.+|+..+.++.++
T Consensus 521 e~~i~~~l~~~~~~~TvIiI------------tHrl~~-i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 521 EQLVMQALNAASRRQTTLMV------------THQLED-LAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHHHHHhCCCEEEEE------------ecChHH-HHhCCEEEEEeCCeEeecCCHHH
Confidence 99984 2 2356766542 233222 34489999998888776665443
No 170
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.94 E-value=3.5e-27 Score=223.81 Aligned_cols=155 Identities=25% Similarity=0.383 Sum_probs=120.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++ .||+
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIR 93 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHH
Confidence 7899999999999999999999999999999999987 467999999986532 34567999999987764 6999
Q ss_pred HHHHHHHH-------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... .+ ++ +||++||++|+.+|++++|||||+|||..+
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 99875210 00 00 189999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
+..+. -+.+|+++..-+ |+..... .+|+++.+.+|+....
T Consensus 174 ~~~l~~~l~~~~~~~tiii~s------------H~~~~~~-~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 174 EHAIMRNMHDICAGRTVIIIA------------HRLSTVK-NADRIIVMEKGRIVEQ 217 (237)
T ss_pred HHHHHHHHHHhcCCCEEEEEe------------CCHHHHH-hCCEEEEEECCEEEEE
Confidence 98873 223576655532 3333322 3777777877766443
No 171
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8e-27 Score=225.60 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=120.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|++++|||+++|+||||||||||+|+|+|..++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 789999999999999999999999999999999998631 368999999987631 23567999999988887
Q ss_pred CCCHHHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 73 HLTVTETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 73 ~lTv~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPts 113 (413)
. ||+||+.+.... ++. +||++||++|+.+|++++|||||+
T Consensus 114 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 192 (267)
T PRK14235 114 K-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192 (267)
T ss_pred C-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 5 999999864311 110 189999999999999999999999
Q ss_pred CCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 114 GLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 114 gLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|||+.++..+. -+.+|.++..- .|+.....+.+|+++.+.+|....
T Consensus 193 ~LD~~~~~~l~~~L~~l~~~~tiiiv------------tH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 193 ALDPIATAKVEELIDELRQNYTIVIV------------THSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEE------------EcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999998883 12345544442 233333345567777777766543
No 172
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.4e-27 Score=221.46 Aligned_cols=154 Identities=27% Similarity=0.356 Sum_probs=120.6
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHH
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
.|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++||+.
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 48999999999999999999999999999999987 467999999987643 23457999999999999999999997
Q ss_pred HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+.... +++ +||++||++++.+|++++|||||+|||..++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~ 173 (232)
T PRK10771 94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173 (232)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 64211 010 18999999999999999999999999999998873
Q ss_pred -Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 -LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 -ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+.. .|.++..-+ |+.......+|+++.+.+|+...
T Consensus 174 ~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~g~i~~ 210 (232)
T PRK10771 174 QVCQERQLTLLMVS------------HSLEDAARIAPRSLVVADGRIAW 210 (232)
T ss_pred HHHHhcCCEEEEEE------------CCHHHHHHhCCEEEEEECCEEEE
Confidence 223 366655522 33333345577777777776543
No 173
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.2e-27 Score=223.53 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=121.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. ..+|+|.++|.+... ..++.++|++|+..+++
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 100 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP 100 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence 789999999999999999999999999999999986532 247999999987532 23456999999998887
Q ss_pred CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg 114 (413)
. ||+||+.+.... ++ . +||+.||++|+.+|++++|||||+|
T Consensus 101 ~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 179 (253)
T PRK14261 101 K-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA 179 (253)
T ss_pred c-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 4 999999874321 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.++.++-.- .|+.+...+.+|+++.+.+|+...
T Consensus 180 LD~~~~~~l~~~l~~~~~~~tvii~------------sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 180 LDPIATAKIEDLIEDLKKEYTVIIV------------THNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CCHHHHHHHHHHHHHHhhCceEEEE------------EcCHHHHHhhCCEEEEEECCEEEE
Confidence 9999998883 12234444442 234444456678888777776544
No 174
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=1.2e-26 Score=215.21 Aligned_cols=131 Identities=30% Similarity=0.416 Sum_probs=109.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.+++ .+|+|.++|.+.. ...++.++|++|+..+++.+|++|
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 68999999999999999999999999999999999874 6799999998753 234567999999998889999999
Q ss_pred HHHHHHHc-------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh
Q 048308 79 TLVFIALF-------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN 126 (413)
Q Consensus 79 ~l~f~~~~-------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll 126 (413)
++.+.... +++ +||+++|++|+.+|++++|||||+|||+.++.++. +.
T Consensus 93 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 172 (201)
T cd03231 93 NLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172 (201)
T ss_pred HHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 99764211 111 18999999999999999999999999999998883 22
Q ss_pred cCCcEEEe
Q 048308 127 SEGNSLHV 134 (413)
Q Consensus 127 ~~G~~v~~ 134 (413)
++|.++..
T Consensus 173 ~~g~tiii 180 (201)
T cd03231 173 ARGGMVVL 180 (201)
T ss_pred hCCCEEEE
Confidence 34665444
No 175
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.5e-27 Score=223.30 Aligned_cols=155 Identities=30% Similarity=0.391 Sum_probs=121.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++ .||+
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVK 94 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHH
Confidence 7899999999999999999999999999999999987 467999999987532 33567999999988876 6999
Q ss_pred HHHHHHHH---------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308 78 ETLVFIAL---------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--- 124 (413)
Q Consensus 78 e~l~f~~~---------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--- 124 (413)
|++.+... ++++ +||+.||++|+.+|++++|||||+|||..++..+.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 99875321 1221 18999999999999999999999999999998873
Q ss_pred --Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 --LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 --ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+.. +|.++..-+ |+.+...+.+|+++.+.+|....
T Consensus 175 ~~~~~~~g~tii~~s------------H~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 175 VKLKNKMNLTVIWIT------------HNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred HHHHHhCCCEEEEEe------------ccHHHHHHhCCEEEEEeCCEEEE
Confidence 222 376665532 33333345577777777776543
No 176
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-27 Score=229.67 Aligned_cols=155 Identities=25% Similarity=0.328 Sum_probs=122.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|+.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR 103 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHH
Confidence 7899999999999999999999999999999999987 467999999986532 3345799999998888899999
Q ss_pred HHHHHHHH-----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL-----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~-----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.+... ++++ +||+.||++|+.+|++++|||||+|||..++
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (265)
T PRK10575 104 ELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99986321 0000 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+. +.. .|.++..- .|+.+...+.+|+++.+.+|...
T Consensus 184 ~~~~~~l~~l~~~~~~tiii~------------sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 184 VDVLALVHRLSQERGLTVIAV------------LHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCeEE
Confidence 8873 223 36665542 34444445667888888777654
No 177
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.6e-27 Score=226.96 Aligned_cols=158 Identities=24% Similarity=0.328 Sum_probs=124.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|++
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 7899999999999999999999999999999999987 467999999987532 2345799999999988899999
Q ss_pred HHHHHHHH-----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL-----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~-----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|++.+... +++. +||+.||++|+.+|++++|||||+|||+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 179 (265)
T PRK10253 100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 99976310 0110 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
..+. +.. .|.++-.- .|+.....+.+|+++.+.+|.+...+
T Consensus 180 ~~l~~~L~~l~~~~~~tiii~------------tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 180 IDLLELLSELNREKGYTLAAV------------LHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 8883 222 36655542 23443445667888888887765433
No 178
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=6.4e-27 Score=224.76 Aligned_cols=159 Identities=28% Similarity=0.399 Sum_probs=125.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||+
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 7899999999999999999999999999999999987 467999999987542 2345699999998778889999
Q ss_pred HHHHHHHH-----cCCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL-----FRLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~-----~~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.+... ...+ +||+.||++|+.+|++++|||||+|||..++
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 99976310 0000 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
..+. +..+|.++..- .|+.+.....+|+++.+.+|.....++
T Consensus 174 ~~l~~~l~~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 174 LETLALVRELAATGVTVVAA------------LHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 8883 22346655542 344444456688888888887654433
No 179
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=2.7e-27 Score=224.64 Aligned_cols=154 Identities=30% Similarity=0.411 Sum_probs=119.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++ .||+
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIA 94 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHH
Confidence 7899999999999999999999999999999999987 467999999976532 23457999999988776 6999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
|++.+... . +++ +||+.||++|+.+|++++|||||+|||+.+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 99875310 0 010 289999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+..+. + +.+|+++..-+ |+.+... .+|.++.+.+|....
T Consensus 175 ~~~l~~~l~~~~~g~~vi~~s------------h~~~~~~-~~d~v~~l~~G~i~~ 217 (238)
T cd03249 175 EKLVQEALDRAMKGRTTIVIA------------HRLSTIR-NADLIAVLQNGQVVE 217 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEEe------------CCHHHHh-hCCEEEEEECCEEEE
Confidence 99883 1 12566554422 3333333 477777887776544
No 180
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=6.8e-27 Score=225.31 Aligned_cols=159 Identities=26% Similarity=0.409 Sum_probs=123.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh---------hccccEEEEecCCccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR---------TVKRKTGFVAHSNVFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~---------~~~~~~~~v~q~~~~~ 71 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++. ..+|+|.++|.+... ..++.++|++|+..++
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV 98 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccc
Confidence 789999999999999999999999999999999998753 246999999986531 2245699999999999
Q ss_pred CCCCHHHHHHHHHH---------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeC
Q 048308 72 LHLTVTETLVFIAL---------------------------FRLP--------------IKRVSRAQELLINPSLLFLDE 110 (413)
Q Consensus 72 ~~lTv~e~l~f~~~---------------------------~~~~--------------~krvsia~~l~~~p~llllDE 110 (413)
+.+||+|++.+... ++++ +||+.||++|+.+|++++|||
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 178 (262)
T PRK09984 99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178 (262)
T ss_pred cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999976421 0110 189999999999999999999
Q ss_pred CCCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 111 PASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 111 PtsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
||+|||..++..+. +.. +|.++..- .|+.+.....+|+++.+.+|.....
T Consensus 179 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~------------tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 179 PIASLDPESARIVMDTLRDINQNDGITVVVT------------LHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999998883 222 36655442 2343333455788888877765433
No 181
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.5e-27 Score=224.25 Aligned_cols=157 Identities=25% Similarity=0.348 Sum_probs=119.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++ . +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP 106 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence 78999999999999999999999999999999998752 1 258999999987531 33567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
. ||+||+.+.... ++. +||++||++|+.+|++++|||||+|
T Consensus 107 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 185 (259)
T PRK14274 107 Q-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185 (259)
T ss_pred c-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 5 999999764211 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. -+.+|.++..-+ |+.....+.+|+++.+.+|+...
T Consensus 186 LD~~~~~~l~~~l~~~~~~~tiiivt------------H~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 186 LDPVSTRKIEELILKLKEKYTIVIVT------------HNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEE------------cCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998873 123455544422 23333335567777777776543
No 182
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9e-27 Score=231.45 Aligned_cols=120 Identities=28% Similarity=0.412 Sum_probs=103.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+|+|||+++++||+++|+|+||||||||+++|+|++++ .+|+|.++|.++.+ ..++.++||+|+. .+.+
T Consensus 30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 68999999999999999999999999999999999874 67999999987632 2356799999997 5888
Q ss_pred CCCHHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 73 HLTVTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
.+||.+++...... +++ +||+.||++|+.+|++|++||||+|||.
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 99999888643211 111 1899999999999999999999999999
Q ss_pred HHHHHH
Q 048308 118 TIAKQI 123 (413)
Q Consensus 118 ~~~~~i 123 (413)
.++.++
T Consensus 188 ~~~~~i 193 (327)
T PRK11308 188 SVQAQV 193 (327)
T ss_pred HHHHHH
Confidence 999887
No 183
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=223.14 Aligned_cols=130 Identities=32% Similarity=0.456 Sum_probs=108.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..+.++|++|+..+++.+||+||+.
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHHHHHH
Confidence 7899999999999999999999999999999999987 467999999987643 2345899999999899999999998
Q ss_pred HHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+.... +.+ +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 172 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL 172 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 74321 110 18999999999999999999999999999998883
Q ss_pred -Hhc-CCcEEEe
Q 048308 125 -LNS-EGNSLHV 134 (413)
Q Consensus 125 -ll~-~G~~v~~ 134 (413)
+.. +|.++..
T Consensus 173 ~~~~~~g~tvii 184 (255)
T PRK11248 173 KLWQETGKQVLL 184 (255)
T ss_pred HHHHhcCCEEEE
Confidence 222 3766555
No 184
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=3.2e-27 Score=256.35 Aligned_cols=159 Identities=28% Similarity=0.355 Sum_probs=126.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.+||+|+||||||||+|+|+|.++ +.+|+|.+||.++.+ ..++.++||+|++.+|+ -|++
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~ 544 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIF 544 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHH
Confidence 7999999999999999999999999999999999998 467999999998753 56788999999999885 5999
Q ss_pred HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.+... . ++| +||++|||+|+.+|++++||||||+||+.+.
T Consensus 545 eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te 624 (686)
T TIGR03797 545 ENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624 (686)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 99987411 0 111 2899999999999999999999999999999
Q ss_pred HHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 121 KQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 121 ~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
.++. +.+.++++-. +.|..... .-+|.++.+.+|++...++.+
T Consensus 625 ~~i~~~L~~~~~T~Ii------------ItHr~~~i-~~~D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 625 AIVSESLERLKVTRIV------------IAHRLSTI-RNADRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHHhCCeEEE------------EecChHHH-HcCCEEEEEECCEEEEECCHH
Confidence 9984 3333455433 22333222 337888888888776555433
No 185
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=230.85 Aligned_cols=158 Identities=24% Similarity=0.341 Sum_probs=117.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh----h----ccccEEEEecCC--c
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR----T----VKRKTGFVAHSN--V 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~--~ 69 (413)
+|+|||+++++||+++|+|+||||||||+++|+|++++. ..+|+|.++|+++.. . .++.++||+|+. .
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 101 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTS 101 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhh
Confidence 799999999999999999999999999999999998632 368999999987632 1 124699999997 4
Q ss_pred cCCCCCHHHHHHHHHH--------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308 70 FYLHLTVTETLVFIAL--------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 70 ~~~~lTv~e~l~f~~~--------------------~~~~-----------------~krvsia~~l~~~p~llllDEPt 112 (413)
+.|.+|+.+++..... ++++ +||+.||++|+.+|++|++||||
T Consensus 102 l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPt 181 (326)
T PRK11022 102 LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181 (326)
T ss_pred cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 7889999877643211 1221 18999999999999999999999
Q ss_pred CCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 113 SGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 113 sgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+|||..++.+++ +.. .|.++.+ +.|+.......+|+++.+..|++..
T Consensus 182 s~LD~~~~~~il~lL~~l~~~~g~til~------------iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 182 TALDVTIQAQIIELLLELQQKENMALVL------------ITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEE------------EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999998883 112 2554444 2233333334466666666665543
No 186
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.3e-27 Score=227.99 Aligned_cols=155 Identities=19% Similarity=0.319 Sum_probs=117.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---------hhccccEEEEecCCc-cC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---------RTVKRKTGFVAHSNV-FY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------~~~~~~~~~v~q~~~-~~ 71 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ...++.++|++|+.. .+
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 7999999999999999999999999999999999987 46799999998652 123557999999863 22
Q ss_pred CCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 72 LHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
...||+||+.+.... +++ +||+.||++|+.+|++++|||||+|||+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 346999999875321 121 1899999999999999999999999999
Q ss_pred HHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 118 TIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 118 ~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
.++..+. +.. +|.++..-+ |+.+.....+|+++.+.+|...
T Consensus 184 ~~~~~l~~~l~~~~~~~~~tiiiis------------H~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVT------------HNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEE
Confidence 9998873 223 366655533 2222223446666666666554
No 187
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.94 E-value=8.4e-27 Score=216.03 Aligned_cols=158 Identities=27% Similarity=0.335 Sum_probs=119.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+++|+|+++++||+++|+|+||||||||+|+|+|..+..+.+|+|.++|.+... . .++.++|++|+..+++..|+
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN 94 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH
Confidence 789999999999999999999999999999999984212477999999987642 1 23459999999999999999
Q ss_pred HHHHHHHH-HcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCC
Q 048308 77 TETLVFIA-LFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGF 149 (413)
Q Consensus 77 ~e~l~f~~-~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~ 149 (413)
++++.-.. .+. ..+||++||++|+.+|++++|||||+|||+.++..+. +..+|.++..-+ |
T Consensus 95 ~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~s------------h 162 (200)
T cd03217 95 ADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT------------H 162 (200)
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe------------c
Confidence 99883211 111 1238999999999999999999999999999998883 223476655533 2
Q ss_pred CCCCCCC-hhHHHHHhhCCccCC
Q 048308 150 EPSAAMN-PSDFLLDLANGVVSG 171 (413)
Q Consensus 150 ~~p~~~n-~ad~~~~~~~~~~~~ 171 (413)
+.+.... .+|+++.+.+|+...
T Consensus 163 ~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 163 YQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred CHHHHHHhhCCEEEEEECCEEEE
Confidence 2222223 466666666665543
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=222.07 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=121.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|++++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP 98 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence 789999999999999999999999999999999998742 136999999987531 33567999999998887
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
. |++||+.+.... ++. +||++||++|+.+|++++|||||+|
T Consensus 99 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 99 K-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred C-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 5 999999874311 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. -+.+|.++-.- .|+.......+|+++.+.+|+...
T Consensus 178 LD~~~~~~l~~~l~~~~~~~tiliv------------sh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 178 LDPVSTMRIEELMQELKQNYTIAIV------------THNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHhhCCEEEEEeCCeEEE
Confidence 9999998773 12345555442 233333345577777777776543
No 189
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.9e-27 Score=225.56 Aligned_cols=122 Identities=25% Similarity=0.401 Sum_probs=102.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++. +.+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP 107 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence 789999999999999999999999999999999987521 36899999998652 134567999999998887
Q ss_pred CCCHHHHHHHHHHc------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIALF------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~~------------------~~------------------~~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.||+||+.+.+.. ++ .+||++||++|+.+|++++|||||+|||
T Consensus 108 -~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD 186 (269)
T PRK14259 108 -KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186 (269)
T ss_pred -hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 4999999864311 11 0189999999999999999999999999
Q ss_pred HHHHHHHH
Q 048308 117 STIAKQIL 124 (413)
Q Consensus 117 ~~~~~~i~ 124 (413)
+.++..+.
T Consensus 187 ~~~~~~l~ 194 (269)
T PRK14259 187 PISTLKIE 194 (269)
T ss_pred HHHHHHHH
Confidence 99998883
No 190
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.9e-26 Score=214.70 Aligned_cols=131 Identities=31% Similarity=0.474 Sum_probs=109.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|++.+++.+||+|++
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l 94 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL 94 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence 6899999999999999999999999999999999987 467999999976432 2456789999998888899999999
Q ss_pred HHHHHc---------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh
Q 048308 81 VFIALF---------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN 126 (413)
Q Consensus 81 ~f~~~~---------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll 126 (413)
.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+. +.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (207)
T PRK13539 95 EFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174 (207)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 764322 110 18999999999999999999999999999999883 23
Q ss_pred cCCcEEEe
Q 048308 127 SEGNSLHV 134 (413)
Q Consensus 127 ~~G~~v~~ 134 (413)
++|.++..
T Consensus 175 ~~~~tiii 182 (207)
T PRK13539 175 AQGGIVIA 182 (207)
T ss_pred HCCCEEEE
Confidence 45766555
No 191
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=224.43 Aligned_cols=158 Identities=24% Similarity=0.318 Sum_probs=122.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|++++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 114 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA 114 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence 789999999999999999999999999999999998631 468999999987632 23557999999988877
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+.... ++. +||+.||++|+.+|++++|||||+|
T Consensus 115 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~ 193 (267)
T PRK14237 115 -KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193 (267)
T ss_pred -ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 6999999874211 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
||+.++..+. -+.+|.++..- .|+.+...+.||+++.+.+|.....
T Consensus 194 LD~~~~~~l~~~l~~~~~~~tiii~------------tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 194 LDPISTMQLEETMFELKKNYTIIIV------------THNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEE------------ecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999998873 11345544442 2344444456788888877766443
No 192
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4e-27 Score=222.11 Aligned_cols=154 Identities=27% Similarity=0.354 Sum_probs=119.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+... ..++.++|++|+..+++. |++
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~ 94 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIM 94 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHH
Confidence 7899999999999999999999999999999999987 467999999986532 345679999999887775 999
Q ss_pred HHHHHHHH-------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
|++.+... .+ ++ +||+.||++|+.+|++++|||||+|||+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~ 174 (229)
T cd03254 95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174 (229)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 99875310 00 00 289999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+..+. -+.+|+++..-+ |+.+... .+|+++.+.+|....
T Consensus 175 ~~~l~~~l~~~~~~~tii~~s------------h~~~~~~-~~d~i~~l~~g~~~~ 217 (229)
T cd03254 175 EKLIQEALEKLMKGRTSIIIA------------HRLSTIK-NADKILVLDDGKIIE 217 (229)
T ss_pred HHHHHHHHHHhcCCCEEEEEe------------cCHHHHh-hCCEEEEEeCCeEEE
Confidence 98873 223566655532 2332222 367777777776543
No 193
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=1.1e-26 Score=231.09 Aligned_cols=122 Identities=28% Similarity=0.436 Sum_probs=102.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh----h---c-cccEEEEecCC--cc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR----T---V-KRKTGFVAHSN--VF 70 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~----~---~-~~~~~~v~q~~--~~ 70 (413)
+++|||+++++||+++|+|+||||||||+++|+|++++. ..+|+|.++|.++.. . . ++.++||+|+. .+
T Consensus 31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l 110 (330)
T PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSL 110 (330)
T ss_pred EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhc
Confidence 789999999999999999999999999999999998752 248999999987632 1 1 24799999997 68
Q ss_pred CCCCCHHHHHHHHHH--------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 71 YLHLTVTETLVFIAL--------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 71 ~~~lTv~e~l~f~~~--------------------~~~~-----------------~krvsia~~l~~~p~llllDEPts 113 (413)
.+.+|+.+++..... .+++ +||+.||++|+.+|+++++||||+
T Consensus 111 ~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts 190 (330)
T PRK09473 111 NPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 190 (330)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 899999988754321 1111 189999999999999999999999
Q ss_pred CCCHHHHHHH
Q 048308 114 GLDSTIAKQI 123 (413)
Q Consensus 114 gLD~~~~~~i 123 (413)
|||..++.++
T Consensus 191 ~LD~~~~~~i 200 (330)
T PRK09473 191 ALDVTVQAQI 200 (330)
T ss_pred cCCHHHHHHH
Confidence 9999999888
No 194
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.4e-26 Score=215.14 Aligned_cols=131 Identities=26% Similarity=0.413 Sum_probs=110.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+.. ...++.++|++|++.+++.+|++|
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence 68999999999999999999999999999999999874 6799999998753 234567999999998999999999
Q ss_pred HHHHHHHcC----------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 79 TLVFIALFR----------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 79 ~l~f~~~~~----------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
++.+..... +. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 173 (204)
T PRK13538 94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173 (204)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 998754321 10 18999999999999999999999999999999883
Q ss_pred -HhcCCcEEEe
Q 048308 125 -LNSEGNSLHV 134 (413)
Q Consensus 125 -ll~~G~~v~~ 134 (413)
+-++|.++..
T Consensus 174 ~~~~~~~tiii 184 (204)
T PRK13538 174 QHAEQGGMVIL 184 (204)
T ss_pred HHHHCCCEEEE
Confidence 1234666555
No 195
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.94 E-value=5.5e-27 Score=220.20 Aligned_cols=131 Identities=29% Similarity=0.484 Sum_probs=110.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++++
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 7999999999999999999999999999999999987 467999999987632 2356799999999999999
Q ss_pred CHHHHHHHHHHcC--Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 75 TVTETLVFIALFR--LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 75 Tv~e~l~f~~~~~--~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|+.||+.+..... .+ +||+.||++|+.+|++++|||||+|||+.++
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 9999998764321 11 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEe
Q 048308 121 KQIL-----LNS-EGNSLHV 134 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~ 134 (413)
..+. +.. +|+++..
T Consensus 178 ~~l~~~l~~~~~~~~~tii~ 197 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILI 197 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 8873 333 3666655
No 196
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=223.25 Aligned_cols=121 Identities=26% Similarity=0.429 Sum_probs=102.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--eeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-E--TRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|.+++. + .+|+|.++|.+... ..++.++|++|+..+++
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP 101 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence 789999999999999999999999999999999997642 2 48999999986531 23457999999998887
Q ss_pred CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+.... ++ . +||++||++|+.+|++++|||||+|
T Consensus 102 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 180 (259)
T PRK14260 102 -MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180 (259)
T ss_pred -ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 8999999764211 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHH
Q 048308 115 LDSTIAKQI 123 (413)
Q Consensus 115 LD~~~~~~i 123 (413)
||+.++..+
T Consensus 181 LD~~~~~~l 189 (259)
T PRK14260 181 LDPIATMKV 189 (259)
T ss_pred CCHHHHHHH
Confidence 999999887
No 197
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.5e-27 Score=245.09 Aligned_cols=157 Identities=23% Similarity=0.298 Sum_probs=122.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++++.+|+|.++|.+... ..++.++||+|+..+++.+||
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 99 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSV 99 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcH
Confidence 789999999999999999999999999999999998743368999999987642 124569999999989999999
Q ss_pred HHHHHHHHHcC----------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 77 TETLVFIALFR----------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 77 ~e~l~f~~~~~----------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+|++.+....+ ++ +||+.||++|+.+|++++|||||+|||+.++
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~ 179 (506)
T PRK13549 100 LENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESET 179 (506)
T ss_pred HHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 99998753210 10 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+. +.++|.++..-+ |+.......||+++.+.+|+..
T Consensus 180 ~~l~~~l~~l~~~~~tvi~~t------------H~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 180 AVLLDIIRDLKAHGIACIYIS------------HKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred HHHHHHHHHHHHCCCEEEEEe------------CcHHHHHHhcCEEEEEECCEEe
Confidence 8883 223455554422 3333334456666666666543
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=221.57 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=119.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|.+... ..++.++|++|+..+++
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 99 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP 99 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence 7899999999999999999999999999999999864 21 248999999987531 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.|++||+.+.... ++ + +||++||++|+.+|++++|||||+|
T Consensus 100 -~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14255 100 -FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178 (252)
T ss_pred -CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 6999999864211 00 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. -+.++.++..- .|+.......+|+++.+.+|....
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tii~v------------sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 179 LDPISSTQIENMLLELRDQYTIILV------------THSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEE------------ECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 11233443331 233333345577777777776543
No 199
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=1.1e-26 Score=224.58 Aligned_cols=156 Identities=24% Similarity=0.344 Sum_probs=120.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc--cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV--FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~--~~~~lT 75 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+.. +++.+|
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 7899999999999999999999999999999999987 467999999987642 22356999999864 567889
Q ss_pred HHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 76 VTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 76 v~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+.|++.+.... ++. +||++||++|+.+|++++|||||+|||+.++
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 99888654321 110 1899999999999999999999999999999
Q ss_pred HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
..+. +.+ .|.++..-+ |+.....+.+|+++.+.+|....
T Consensus 186 ~~l~~~l~~~~~~~g~tviivs------------H~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 186 SQLINLMLELQEKQGISYIYVT------------QHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHHHHcCcEEEEEe------------CCHHHHHHhcCEEEEEECCEEEe
Confidence 8873 222 376655522 33333345577777777776543
No 200
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.7e-27 Score=221.78 Aligned_cols=155 Identities=26% Similarity=0.389 Sum_probs=121.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..+ ..++.++|++|+..+++ .||+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVA 93 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHH
Confidence 7899999999999999999999999999999999987 467999999986532 33567999999988776 6999
Q ss_pred HHHHHHHH----------------------c--CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL----------------------F--RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~----------------------~--~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... + ++ .+||+.||++|+.+|++++|||||+|||+.+
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 99976310 0 00 0289999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
+..+. + +.+|.++..-+ |+...... +|+++.+.+|.....
T Consensus 174 ~~~l~~~l~~~~~~~tii~~s------------h~~~~~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 174 ERLVQAALERLMKNRTTFVIA------------HRLSTIEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEEe------------cCHHHHhh-CCEEEEecCCeEeee
Confidence 99883 1 23566655532 33333333 788888888876543
No 201
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=221.69 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=119.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|..++ . +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP 99 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence 78999999999999999999999999999999999752 1 368999999987532 23567999999988887
Q ss_pred CCCHHHHHHHHHH---------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 73 HLTVTETLVFIAL---------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 73 ~lTv~e~l~f~~~---------------------~~~~------------------~krvsia~~l~~~p~llllDEPts 113 (413)
. ||+||+.+... +++. +||++||++|+.+|++++|||||+
T Consensus 100 ~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 178 (251)
T PRK14244 100 K-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCS 178 (251)
T ss_pred C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 5 99999876421 1110 189999999999999999999999
Q ss_pred CCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 114 GLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 114 gLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
|||..++..+. -+.+|.++..-+ |+.......+|+++.+.+|...
T Consensus 179 ~LD~~~~~~l~~~l~~~~~~~tiiiis------------H~~~~~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 179 ALDPVATNVIENLIQELKKNFTIIVVT------------HSMKQAKKVSDRVAFFQSGRIV 227 (251)
T ss_pred cCCHHHHHHHHHHHHHHhcCCeEEEEe------------CCHHHHHhhcCEEEEEECCEEE
Confidence 99999998883 123466555422 2333333557777777777654
No 202
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=222.53 Aligned_cols=150 Identities=19% Similarity=0.285 Sum_probs=116.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|++++|||+++|+|+||||||||+|+|+|.+++. +.+|+|.++|.+... ..++.++|++|+..++
T Consensus 23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~- 101 (261)
T PRK14263 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF- 101 (261)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-
Confidence 689999999999999999999999999999999998641 258999999987531 2356799999998877
Q ss_pred CCCHHHHHHHHHHc------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIALF------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~~------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.+|++||+.+.... ++. +||++||++|+.+|++++|||||+|||
T Consensus 102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD 181 (261)
T PRK14263 102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 (261)
T ss_pred cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 59999999865321 110 189999999999999999999999999
Q ss_pred HHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308 117 STIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL 164 (413)
Q Consensus 117 ~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 164 (413)
+.++.++. -+.+|.++..- .|+.......+|+++.+
T Consensus 182 ~~~~~~l~~~l~~~~~~~tii~i------------sH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 182 PIATRRVEELMVELKKDYTIALV------------THNMQQAIRVADTTAFF 221 (261)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHHhCCEEEEE
Confidence 99999883 12345554442 23333334556666666
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=223.20 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=118.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--T-GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|..+ + .+.+|+|.++|++... ..++.++|++|+..+++
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP 115 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence 7899999999999999999999999999999999753 1 1467999999987631 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~------------------~~krvsia~~l~~~p~llllDEPtsg 114 (413)
. |++||+.+.... ++ .+||+.||++|+.+|++++|||||+|
T Consensus 116 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 194 (268)
T PRK14248 116 K-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194 (268)
T ss_pred c-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcc
Confidence 5 999998753210 11 01899999999999999999999999
Q ss_pred CCHHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||..++..+. + +.+|.++..-+ |+.......+|+++.+.+|....
T Consensus 195 LD~~~~~~l~~~l~~~~~~~tiii~t------------H~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 195 LDPISNAKIEELITELKEEYSIIIVT------------HNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred cCHHHHHHHHHHHHHHhcCCEEEEEE------------eCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 1 13355544422 23222334567777777766543
No 204
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=207.96 Aligned_cols=131 Identities=31% Similarity=0.477 Sum_probs=112.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++.+||.++++||||||||||||+++|... +..|+|.+||++++.. ...-|.|+|++.++|.+||.||+.
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-CccceeEeccCccchhhHHHHHHH
Confidence 6899999999999999999999999999999999987 4679999999987642 234678999999999999999999
Q ss_pred HHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh
Q 048308 82 FIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN 126 (413)
Q Consensus 82 f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll 126 (413)
|..+++. + +||+.|||||+.+|++|+||||+..||+.+++++. ++
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence 9876642 1 18999999999999999999999999999999882 22
Q ss_pred c----CCcEEEec
Q 048308 127 S----EGNSLHVG 135 (413)
Q Consensus 127 ~----~G~~v~~G 135 (413)
+ .|+.++.-
T Consensus 177 dlw~~tgk~~lli 189 (259)
T COG4525 177 DLWQETGKQVLLI 189 (259)
T ss_pred HHHHHhCCeEEEE
Confidence 2 46665553
No 205
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=223.62 Aligned_cols=157 Identities=23% Similarity=0.284 Sum_probs=120.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|++++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 119 (272)
T PRK14236 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP 119 (272)
T ss_pred EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc
Confidence 689999999999999999999999999999999997631 368999999987632 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
. |++||+.+.... ++. +||++||++|+.+|++++|||||+|
T Consensus 120 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~g 198 (272)
T PRK14236 120 K-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA 198 (272)
T ss_pred c-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 6 999999764210 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. -+.+|.++..- .|+.......+|+++.+.+|+...
T Consensus 199 LD~~~~~~l~~~L~~~~~~~tiiiv------------tH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 199 LDPISTLKIEELITELKSKYTIVIV------------THNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred CCHHHHHHHHHHHHHHHhCCeEEEE------------eCCHHHHHhhCCEEEEEECCEEEe
Confidence 9999998873 11234444442 233333335577777777776544
No 206
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=5.6e-27 Score=250.40 Aligned_cols=159 Identities=26% Similarity=0.363 Sum_probs=126.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+|+|+|++++ .+|+|.+||.++++ ..++.++||+|++.+|+. |++
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~ 432 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFL 432 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHH
Confidence 79999999999999999999999999999999999984 67999999988753 567889999999999876 999
Q ss_pred HHHHHHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.+.... ++| +||++|||+|+.+|++++||||||+||+.++
T Consensus 433 ~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 433 ANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred HHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 999875210 111 2899999999999999999999999999999
Q ss_pred HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
..+. + +.+++++..= .|..+. ..-+|.++.+.+|+....++.+
T Consensus 513 ~~i~~~l~~~~~~~tvIiv------------tHr~~~-l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 513 QAIQQALAAVREHTTLVVI------------AHRLST-IVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEE------------ecchHH-HHhCCEEEEEECCEEEEEcCHH
Confidence 9884 2 2245555442 233222 2337888888888776555433
No 207
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.94 E-value=1.1e-26 Score=218.41 Aligned_cols=132 Identities=26% Similarity=0.372 Sum_probs=107.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC--Cc--ccC---h-----hccccEEEEecCCc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN--NN--PLS---R-----TVKRKTGFVAHSNV 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~--~~~---~-----~~~~~~~~v~q~~~ 69 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++ |. +.. . ..++.++|++|+..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 79999999999999999999999999999999999874 67999998 42 321 1 12346999999999
Q ss_pred cCCCCCHHHHHHHHHHc-C------------------Cc---------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 70 FYLHLTVTETLVFIALF-R------------------LP---------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 70 ~~~~lTv~e~l~f~~~~-~------------------~~---------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
+++.+||+|++.+.... + ++ +||+.||++|+.+|++++|||||+||
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999999999764211 1 10 18999999999999999999999999
Q ss_pred CHHHHHHHH-----HhcCCcEEEec
Q 048308 116 DSTIAKQIL-----LNSEGNSLHVG 135 (413)
Q Consensus 116 D~~~~~~i~-----ll~~G~~v~~G 135 (413)
|+.++..+. +.++|.++..-
T Consensus 181 D~~~~~~l~~~l~~~~~~g~tii~v 205 (224)
T TIGR02324 181 DAANRQVVVELIAEAKARGAALIGI 205 (224)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999883 22357665553
No 208
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=6.2e-26 Score=209.24 Aligned_cols=130 Identities=24% Similarity=0.304 Sum_probs=107.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
+.++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..+..++.++|++|+..+++.+||+||+.+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 445999999999999999999999999999999987 467999999987654334568999999888889999999976
Q ss_pred HHHc--------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCC
Q 048308 83 IALF--------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129 (413)
Q Consensus 83 ~~~~--------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G 129 (413)
.... +++ +||++||++++.+|++++|||||+|||+.++..+. ...+|
T Consensus 94 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~ 173 (195)
T PRK13541 94 WSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG 173 (195)
T ss_pred HHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 4321 111 18999999999999999999999999999998883 22356
Q ss_pred cEEEe
Q 048308 130 NSLHV 134 (413)
Q Consensus 130 ~~v~~ 134 (413)
.++..
T Consensus 174 ~tiii 178 (195)
T PRK13541 174 GIVLL 178 (195)
T ss_pred CEEEE
Confidence 66555
No 209
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=8.5e-27 Score=218.74 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=101.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..+ ..++.++|++|+..+++ .||+
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 95 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIR 95 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHH
Confidence 7999999999999999999999999999999999987 467999999987532 34667999999988765 5999
Q ss_pred HHHHHHH------------HcCC-------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIA------------LFRL-------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~------------~~~~-------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.+.. .+++ .+||+.||++|+.+|++++|||||+|||+.++
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 9985310 0000 02899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
..+
T Consensus 176 ~~l 178 (221)
T cd03244 176 ALI 178 (221)
T ss_pred HHH
Confidence 887
No 210
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-27 Score=239.71 Aligned_cols=161 Identities=27% Similarity=0.382 Sum_probs=131.8
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv 76 (413)
++++|+|+++++|+.++|+|+||||||||+++|+|+.+ +.+|+|.+||.+.. +.+++++++|+|++.+++. |+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-Ti 411 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TI 411 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cH
Confidence 36899999999999999999999999999999999997 47899999998864 3678899999999998865 99
Q ss_pred HHHHHHHHH-------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 77 TETLVFIAL-------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 77 ~e~l~f~~~-------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
|||+.++.. .+.| .||+.+||+|+.+++++++||||++||.++
T Consensus 412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred HHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 999987531 0111 189999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ 177 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~ 177 (413)
.+.|+ -+++++++..-+ |..+. .--+|.++.+.+|+....+..++
T Consensus 492 E~~i~~~l~~l~~~ktvl~it------------Hrl~~-~~~~D~I~vld~G~l~~~g~~~~ 540 (559)
T COG4988 492 EQIILQALQELAKQKTVLVIT------------HRLED-AADADRIVVLDNGRLVEQGTHEE 540 (559)
T ss_pred HHHHHHHHHHHHhCCeEEEEE------------cChHH-HhcCCEEEEecCCceeccCCHHH
Confidence 98873 455778877733 33322 34478888899888776665444
No 211
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=6.8e-27 Score=254.72 Aligned_cols=158 Identities=25% Similarity=0.356 Sum_probs=126.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+|+ .|++
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~ 570 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVR 570 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHH
Confidence 7999999999999999999999999999999999997 467999999988743 46788999999998885 5999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+++|++++||||||+||+.+
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 99976310 0 111 289999999999999999999999999999
Q ss_pred HHHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
..++. +.+.|+++.. +.|..... .-+|+++.+.+|++...++.
T Consensus 651 e~~i~~~l~~~~~T~Ii------------itHrl~~i-~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 651 EKIIDDNLRRRGCTCII------------VAHRLSTI-RDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHhcCCEEEE------------EecCHHHH-HhCCEEEEEeCCEEEEecCH
Confidence 99984 4445665544 22333322 23788888888877655443
No 212
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-26 Score=222.72 Aligned_cols=157 Identities=20% Similarity=0.295 Sum_probs=120.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh-----hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~- 114 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP- 114 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-
Confidence 789999999999999999999999999999999998642 368999999987532 34567999999988887
Q ss_pred CCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 74 LTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 74 lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
.|++||+.+... +++. +||+.||++|+.+|++++|||||+||
T Consensus 115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~L 194 (276)
T PRK14271 115 MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194 (276)
T ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 899999976421 1111 18999999999999999999999999
Q ss_pred CHHHHHHHH-Hh---cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 116 DSTIAKQIL-LN---SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 116 D~~~~~~i~-ll---~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|..++..+. ++ .++.++.. ..|+.+...+.+|+++.+.+|....
T Consensus 195 D~~~~~~l~~~L~~~~~~~tiii------------vsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 195 DPTTTEKIEEFIRSLADRLTVII------------VTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEE------------EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999998873 11 22333333 1233333345577777777776543
No 213
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=219.00 Aligned_cols=157 Identities=24% Similarity=0.317 Sum_probs=118.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|.+++ . +.+|+|.++|.+... ..++.++|++|++.+++
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP 98 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence 78999999999999999999999999999999999752 1 368999999987531 23567999999988876
Q ss_pred CCCHHHHHHHHHH--------------------cCC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIAL--------------------FRL--------P----------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~--------~----------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+... +++ . +||++||++|+.+|++++|||||+|
T Consensus 99 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~ 177 (251)
T PRK14251 99 -FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177 (251)
T ss_pred -CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence 799999976421 011 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH-Hh---cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL-LN---SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~-ll---~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. ++ .+|.++..-+ |+.......+|+++.+.+|....
T Consensus 178 LD~~~~~~l~~~l~~~~~~~tiiiis------------H~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 178 LDPISSSEIEETLMELKHQYTFIMVT------------HNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEE------------CCHHHHHhhcCEEEEEECCEEEE
Confidence 9999998883 11 2344443322 23222234467777777776543
No 214
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=7.8e-27 Score=254.17 Aligned_cols=159 Identities=26% Similarity=0.379 Sum_probs=125.8
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|++++|||.++|+||||||||||+|+|+|++++ .+|+|.+||.++.+ ..++.++||+|++.+|+. |+
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI 564 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SI 564 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HH
Confidence 379999999999999999999999999999999999984 67999999987642 567789999999998865 99
Q ss_pred HHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 77 TETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 77 ~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+||+.+.... ++| +||++|||+++.+|++++||||||+||+
T Consensus 565 ~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~ 644 (708)
T TIGR01193 565 LENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644 (708)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 9999875210 111 1899999999999999999999999999
Q ss_pred HHHHHHH--Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 118 TIAKQIL--LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 118 ~~~~~i~--ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
.+...+. +.+ +|+++-. +.|.... ...+|.++.+.+|+....++.
T Consensus 645 ~te~~i~~~L~~~~~~T~Ii------------itHr~~~-~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 645 ITEKKIVNNLLNLQDKTIIF------------VAHRLSV-AKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHhcCCEEEE------------EecchHH-HHcCCEEEEEECCEEEEECCH
Confidence 9999884 222 4555443 2233322 244788888888877655543
No 215
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=1.3e-26 Score=215.58 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=116.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+.+++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++ .|++
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~ 99 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIR 99 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHH
Confidence 7899999999999999999999999999999999987 467999999987532 34567999999987776 5999
Q ss_pred HHHHHHHH---------cCC----------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh---cCCcEEEe
Q 048308 78 ETLVFIAL---------FRL----------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN---SEGNSLHV 134 (413)
Q Consensus 78 e~l~f~~~---------~~~----------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll---~~G~~v~~ 134 (413)
||+.+... +++ ..||+.||++|+.+|++++|||||+|||+.++..+. ++ .+|.++-.
T Consensus 100 ~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 179 (207)
T cd03369 100 SNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILT 179 (207)
T ss_pred HHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99964311 111 128999999999999999999999999999998873 11 34655444
Q ss_pred cCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 135 GKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 135 G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
- .|+...... +|+++.+.+|..
T Consensus 180 ~------------th~~~~~~~-~d~v~~l~~g~i 201 (207)
T cd03369 180 I------------AHRLRTIID-YDKILVMDAGEV 201 (207)
T ss_pred E------------eCCHHHHhh-CCEEEEEECCEE
Confidence 2 223222222 567666666654
No 216
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.94 E-value=2.2e-26 Score=220.23 Aligned_cols=156 Identities=24% Similarity=0.378 Sum_probs=121.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ .+|+|.++|.+..+ ..++.++|++|+..+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 5899999999999999999999999999999999874 37999999987632 2345689999998888889999
Q ss_pred HHHHHHHHc------------------CCc--------------hhHHHHHHHHhh-------CCCEEEEeCCCCCCCHH
Q 048308 78 ETLVFIALF------------------RLP--------------IKRVSRAQELLI-------NPSLLFLDEPASGLDST 118 (413)
Q Consensus 78 e~l~f~~~~------------------~~~--------------~krvsia~~l~~-------~p~llllDEPtsgLD~~ 118 (413)
||+.+.... ++. +||+.||++|+. +|++++|||||+|||+.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 999864211 110 189999999998 67999999999999999
Q ss_pred HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
++..+. +.++|.++..-+ |+.......+|+++.+.+|+....
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~s------------H~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSS------------HDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEEEE
Confidence 998883 223566655422 333333455778888877776443
No 217
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.2e-26 Score=223.58 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=119.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP 133 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc
Confidence 6899999999999999999999999999999999753 21 268999999987531 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
. ||+||+.+.... ++ . +||+.||++|+.+|++++|||||+|
T Consensus 134 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~g 212 (286)
T PRK14275 134 K-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA 212 (286)
T ss_pred c-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 5 999999864211 11 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH-H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 115 LDSTIAKQIL-L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 115 LD~~~~~~i~-l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
||..++..+. + +.++.++..- .|+.....+.+|+++.+.+|.....
T Consensus 213 LD~~~~~~l~~~L~~~~~~~tvIiv------------sH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 213 LDPKATAKIEDLIQELRGSYTIMIV------------THNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999998883 1 1234444332 2333333455777777777765433
No 218
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.4e-26 Score=221.66 Aligned_cols=157 Identities=25% Similarity=0.315 Sum_probs=120.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--T-GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.++ + .+.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 118 (271)
T PRK14238 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP 118 (271)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence 7899999999999999999999999999999999875 2 1368999999987531 23567999999988877
Q ss_pred CCCHHHHHHHHHHc-C-----------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF-R-----------------------LP--------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~-~-----------------------~~--------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.||+||+.+.... + +. +||+.||++|+.+|++++|||||+|
T Consensus 119 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~ 197 (271)
T PRK14238 119 -KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197 (271)
T ss_pred -ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 5999999764211 0 00 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. -+.+|.++..- .|+.+.....+|+++.+.+|....
T Consensus 198 LD~~~~~~l~~~l~~~~~~~tiiiv------------sH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 198 LDPISTLKVEELVQELKKDYSIIIV------------THNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEEE------------EcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998883 12345554442 233333345577777777776543
No 219
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=1e-26 Score=247.94 Aligned_cols=159 Identities=21% Similarity=0.338 Sum_probs=126.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+|+|+|.+++ .+|+|.+||.+.++ .+++.++||+|++.+|+ -|++
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~ 434 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIA 434 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHH
Confidence 79999999999999999999999999999999999974 67999999998653 45678999999999886 5999
Q ss_pred HHHHHHHH--------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 78 ETLVFIAL--------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 78 e~l~f~~~--------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
||+.+... . ++| +||++|||+|+++|++++||||||+||+.
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 99987310 0 111 18999999999999999999999999999
Q ss_pred HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
++..+. + +.+++++-.= .|+... ...+|.++.+.+|++.+.++.+
T Consensus 515 t~~~i~~~l~~~~~~~tvI~V------------tHr~~~-~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 515 SERAIQAALDELQKNRTSLVI------------AHRLST-IEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEE------------ecchHH-HHhCCEEEEEECCEEEEeCCHH
Confidence 999884 2 2356665542 233322 3448888888888776655443
No 220
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=222.13 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=115.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. ..+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~ 114 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP 114 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence 789999999999999999999999999999999997532 25799999998753 133567999999988876
Q ss_pred CCCHHHHHHHHHH------------------cCC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIAL------------------FRL--------P----------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~------------------~~~--------~----------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
. ||+||+.+... .++ + +||+.||++|+.+|++++|||||+|||
T Consensus 115 ~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD 193 (274)
T PRK14265 115 K-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193 (274)
T ss_pred c-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 4 99999976421 011 0 189999999999999999999999999
Q ss_pred HHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308 117 STIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA 165 (413)
Q Consensus 117 ~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~ 165 (413)
..++..+. + +.+|.++..- .|+.+.....+|+++.+.
T Consensus 194 ~~~~~~l~~~L~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 194 PISTRQVEELCLELKEQYTIIMV------------THNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEe
Confidence 99999883 1 1334444442 234333445566666664
No 221
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.6e-26 Score=222.37 Aligned_cols=121 Identities=21% Similarity=0.374 Sum_probs=102.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP 133 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence 78999999999999999999999999999999999762 1368999999987521 34567999999988887
Q ss_pred CCCHHHHHHHHHH------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIAL------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
. ||+||+.+... +++. +||++||++|+.+|++++|||||+|||
T Consensus 134 ~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD 212 (285)
T PRK14254 134 K-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212 (285)
T ss_pred C-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 5 99999976421 1110 189999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
..++..+
T Consensus 213 ~~~~~~l 219 (285)
T PRK14254 213 PVATSKI 219 (285)
T ss_pred HHHHHHH
Confidence 9999888
No 222
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=219.00 Aligned_cols=155 Identities=29% Similarity=0.432 Sum_probs=120.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++ .||+
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIG 92 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHH
Confidence 7899999999999999999999999999999999987 467999999986532 34567999999988775 6999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . +++ +||++||++|+.+|++++|||||+|||+.+
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99976310 0 010 189999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
...+. + +.+|.++..-+ |+...... ||+++.+.+|.....
T Consensus 173 ~~~l~~~l~~~~~~~tiii~s------------h~~~~~~~-~d~~~~l~~g~i~~~ 216 (236)
T cd03253 173 EREIQAALRDVSKGRTTIVIA------------HRLSTIVN-ADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEc------------CCHHHHHh-CCEEEEEECCEEEee
Confidence 98873 1 22366554422 22222223 788888887766543
No 223
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=3.4e-26 Score=219.96 Aligned_cols=156 Identities=27% Similarity=0.398 Sum_probs=117.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-----cCh----h----ccccEEEEecCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-----LSR----T----VKRKTGFVAHSN 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-----~~~----~----~~~~~~~v~q~~ 68 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+ ... . .++.++|++|+.
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 6899999999999999999999999999999999987 467999999986 432 1 234699999996
Q ss_pred --ccCCCCCHHHHHHHHH--------------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308 69 --VFYLHLTVTETLVFIA--------------------LFRLP---------------IKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 69 --~~~~~lTv~e~l~f~~--------------------~~~~~---------------~krvsia~~l~~~p~llllDEP 111 (413)
.+.+.+|++|++.+.. .+++. +||++||++|+.+|++++||||
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3567788888875321 11111 1899999999999999999999
Q ss_pred CCCCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 112 ASGLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 112 tsgLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|+|||..++..+. +..+ |.++..-+ |+.....+.+|+++.+.+|....
T Consensus 179 t~~LD~~~~~~l~~~l~~~~~~~~~tii~is------------H~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVT------------HDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999998883 1233 66555432 23333334567777777776543
No 224
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=9.9e-27 Score=253.27 Aligned_cols=159 Identities=26% Similarity=0.427 Sum_probs=126.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.+++ .+|+|.+||.+.++ ..++.++||+|++.+|+ .|++
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIr 572 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVR 572 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHH
Confidence 79999999999999999999999999999999999984 67999999998753 45778999999998875 6999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+++++|++++||||||+||+.+
T Consensus 573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 99987421 0 111 289999999999999999999999999999
Q ss_pred HHHHHH--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 120 AKQILL--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 120 ~~~i~l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
...+.- ..+|+++.. +.|.... ..-+|.++.+.+|++.+.++++
T Consensus 653 e~~i~~~~~~~~~TvIi------------ItHrl~~-i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 653 EQLLQESRSRASRTVLL------------IAHRLST-VERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHhhccCCCeEEE------------EeccHHH-HHhCCEEEEEECCEEEEeeCHH
Confidence 988852 224565544 2233322 2348888888888876655443
No 225
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4e-26 Score=213.38 Aligned_cols=127 Identities=33% Similarity=0.423 Sum_probs=105.5
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCCCCH
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~lTv 76 (413)
|+|+++++ |+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999987 467999999986531 234579999999999999999
Q ss_pred HHHHHHHHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 77 TETLVFIALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 77 ~e~l~f~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
+|++.+.... +++ +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 9999765321 010 18999999999999999999999999999998883
Q ss_pred ----HhcC-CcEEEe
Q 048308 125 ----LNSE-GNSLHV 134 (413)
Q Consensus 125 ----ll~~-G~~v~~ 134 (413)
+..+ |.++..
T Consensus 173 ~l~~~~~~~~~tiii 187 (214)
T cd03297 173 ELKQIKKNLNIPVIF 187 (214)
T ss_pred HHHHHHHHcCcEEEE
Confidence 2233 765554
No 226
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=220.96 Aligned_cols=122 Identities=22% Similarity=0.375 Sum_probs=101.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+|+|+|+..+. +.+|+|.++|.+.. ...++.++|++|+..+++
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 104 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP 104 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence 689999999999999999999999999999999986521 26799999998652 133567999999988887
Q ss_pred CCCHHHHHHHHHHc------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIALF------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~~------------------~~------------------~~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.||+||+.+.... ++ .+||++||++|+.+|++++|||||+|||
T Consensus 105 -~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 105 -KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred -ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 4999999763210 11 0289999999999999999999999999
Q ss_pred HHHHHHHH
Q 048308 117 STIAKQIL 124 (413)
Q Consensus 117 ~~~~~~i~ 124 (413)
+.++..+.
T Consensus 184 ~~~~~~l~ 191 (264)
T PRK14243 184 PISTLRIE 191 (264)
T ss_pred HHHHHHHH
Confidence 99998883
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=2.5e-26 Score=222.84 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=122.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC------CeeEEEEECCcccCh----hccccEEEEecCCccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG------ETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFY 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~------~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~ 71 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++. ..+|+|.++|.+... ..++.++|++|+...+
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~ 95 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA 95 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence 789999999999999999999999999999999998742 127999999987632 2345689999998766
Q ss_pred CCCCHHHHHHHHHHc-----------------------CCc--------------hhHHHHHHHHh---------hCCCE
Q 048308 72 LHLTVTETLVFIALF-----------------------RLP--------------IKRVSRAQELL---------INPSL 105 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~-----------------------~~~--------------~krvsia~~l~---------~~p~l 105 (413)
+.+||+||+.+.... +++ +||++||++|+ .+|++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l 175 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCE
Confidence 679999999764210 010 18999999999 59999
Q ss_pred EEEeCCCCCCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 106 LFLDEPASGLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 106 lllDEPtsgLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
++|||||+|||+.++..+. +.++ |.++..-+ |+.....+.+|+++.+.+|+....
T Consensus 176 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiis------------H~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV------------HDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEE------------CCHHHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999883 2334 77665532 333333456788888888876543
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-26 Score=218.20 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=117.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+.. +.+|+|.+||.+... ..++.++|++|+..+++
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 789999999999999999999999999999999986421 268999999987532 23567999999988887
Q ss_pred CCCHHHHHHHHHHc--------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~------------------~~krvsia~~l~~~p~llllDEPtsg 114 (413)
. |++||+.+.... ++ .+||++||++|+.+|++++|||||+|
T Consensus 98 ~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g 176 (250)
T PRK14266 98 K-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176 (250)
T ss_pred c-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 5 999999764210 11 01899999999999999999999999
Q ss_pred CCHHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 115 LDSTIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 115 LD~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
||..++..+. + +.+|.++..-+ |+.+.....+|+++.+.+|...
T Consensus 177 LD~~~~~~l~~~l~~~~~~~tiii~s------------h~~~~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 177 LDPISTTKIEDLIHKLKEDYTIVIVT------------HNMQQATRVSKYTSFFLNGEII 224 (250)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEE------------CCHHHHHhhcCEEEEEECCeEE
Confidence 9999998883 1 13454444322 2333334456666666666543
No 229
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=4.1e-26 Score=205.45 Aligned_cols=113 Identities=29% Similarity=0.370 Sum_probs=98.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|. +.++|++|+..++ ..|++||+.
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~nl~ 85 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTLREQLI 85 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------ceEEEECCCCccc-cccHHHHhh
Confidence 7899999999999999999999999999999999987 46799999873 5699999998754 679999997
Q ss_pred HHHHcCC---chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 82 FIALFRL---PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 82 f~~~~~~---~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.....+ .+||+.+|++|+.+|++++|||||+|||..++..+.
T Consensus 86 ~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~ 131 (166)
T cd03223 86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131 (166)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH
Confidence 6311112 248999999999999999999999999999999883
No 230
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.6e-26 Score=218.94 Aligned_cols=152 Identities=22% Similarity=0.360 Sum_probs=117.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|++.. ...++.++|++|+..+++
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 789999999999999999999999999999999998752 24799999998752 123567999999988887
Q ss_pred CCCHHHHHHHHHH--------------------cCC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIAL--------------------FRL--------P----------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~--------~----------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.|++||+.+... +++ . +||+.||++|+.+|++++|||||+|
T Consensus 102 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~ 180 (261)
T PRK14258 102 -MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180 (261)
T ss_pred -ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 899999976421 111 0 1899999999999999999999999
Q ss_pred CCHHHHHHHH--Hh----cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308 115 LDSTIAKQIL--LN----SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN 166 (413)
Q Consensus 115 LD~~~~~~i~--ll----~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~ 166 (413)
||..++..+. +. .+|.++..-+ |+.....+.+|+++.+.+
T Consensus 181 LD~~~~~~l~~~l~~l~~~~~~tiiivs------------H~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 181 LDPIASMKVESLIQSLRLRSELTMVIVS------------HNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEE------------CCHHHHHHhcCEEEEEcc
Confidence 9999998873 21 2366655522 333333456777777776
No 231
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=1.9e-26 Score=216.16 Aligned_cols=120 Identities=28% Similarity=0.488 Sum_probs=101.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++ .||+
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 95 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLR 95 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHH
Confidence 7899999999999999999999999999999999986 467999999986532 23457999999988776 6999
Q ss_pred HHHHHHH-------------HcCC-------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIA-------------LFRL-------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~-------------~~~~-------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
|++.+.. .+++ + +||+.||++|+.+|++++|||||+|||..+
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~ 175 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 9985421 0111 1 289999999999999999999999999999
Q ss_pred HHHHH
Q 048308 120 AKQIL 124 (413)
Q Consensus 120 ~~~i~ 124 (413)
+..+.
T Consensus 176 ~~~l~ 180 (220)
T cd03245 176 EERLK 180 (220)
T ss_pred HHHHH
Confidence 99884
No 232
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=5.8e-26 Score=217.90 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=118.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh--hccccEEEEecCCc--cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR--TVKRKTGFVAHSNV--FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~--~~~~lT 75 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ..++.++|++|+.. +.+..|
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~ 97 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHT 97 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcccc
Confidence 789999999999999999999999999999999998742 267999999987643 22356999999974 456678
Q ss_pred HHHHHHHHH-----------------HcCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 76 VTETLVFIA-----------------LFRLP-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 76 v~e~l~f~~-----------------~~~~~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
+.+++.+.+ .++++ +||++||++|+.+|++++|||||+|||..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~ 177 (254)
T PRK10418 98 MHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQA 177 (254)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHH
Confidence 888765421 11111 18999999999999999999999999999998
Q ss_pred HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.+. +..+ |.++..-+ |+.....+.+|+++.+.+|....
T Consensus 178 ~l~~~L~~~~~~~g~til~~s------------H~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 178 RILDLLESIVQKRALGMLLVT------------HDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHHHHHHhcCcEEEEEe------------cCHHHHHHhCCEEEEEECCEEEE
Confidence 873 2233 66655532 23333335567777777776543
No 233
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=4.4e-26 Score=220.61 Aligned_cols=156 Identities=27% Similarity=0.390 Sum_probs=119.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+. .+.+
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 7899999999999999999999999999999999987 468999999986532 2356799999997 4667
Q ss_pred CCCHHHHHHHHHH--------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 73 HLTVTETLVFIAL--------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
..|++|++.+... ++++ +||++||++|+.+|++++|||||+|||.
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 8899999854211 1111 1899999999999999999999999999
Q ss_pred HHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 118 TIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 118 ~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.++..+. +.++ |.++..-+ |+.+...+.+|+++.+.+|....
T Consensus 185 ~~~~~~~~~l~~~~~~~~~tiiivs------------H~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 185 VLQAGVIRLLKKLQQQFGTACLFIT------------HDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEE------------CCHHHHHHhCCEEEEEECCEEee
Confidence 9998873 2233 66555422 33333345577777777776543
No 234
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=225.78 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=122.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+. .+.+|+|.++|.++. ...++.++||+|+..++
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~- 175 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF- 175 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-
Confidence 79999999999999999999999999999999998752 135799999999874 13456799999998877
Q ss_pred CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+.|++||+.|.... .+. +||++|||+|+.+|++++|||||+|
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~ 255 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 47999999864311 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
||+.+...+. -+.+++++..- .|+.......+|+++.+.+|.+...+
T Consensus 256 LD~~~~~~i~~~i~~l~~~~Tii~i------------TH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 256 LDPIATAKIEELILELKKKYSIIIV------------THSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999998872 12234554442 23333334457777777777654433
No 235
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=2.7e-26 Score=240.63 Aligned_cols=155 Identities=22% Similarity=0.335 Sum_probs=123.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+... ..++.++|++|+..+++.+||
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 78999999999999999999999999999999999874 67999999987532 124569999999999999999
Q ss_pred HHHHHHHHHc-----------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 77 TETLVFIALF-----------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 77 ~e~l~f~~~~-----------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
+|++.+.... +++ +||++||++|+.+|++++|||||+|||+.+
T Consensus 97 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 176 (501)
T PRK10762 97 AENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTE 176 (501)
T ss_pred HHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence 9999764211 010 189999999999999999999999999999
Q ss_pred HHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 120 AKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 120 ~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+..+. +.++|.++.. ..|+.+...+.||+++.+.+|+..
T Consensus 177 ~~~l~~~l~~l~~~~~tvii------------~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 177 TESLFRVIRELKSQGRGIVY------------ISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHHHHHHHHHHCCCEEEE------------EeCCHHHHHHhCCEEEEEeCCEEE
Confidence 99883 2234655544 234444445667777777777654
No 236
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.1e-26 Score=218.30 Aligned_cols=157 Identities=24% Similarity=0.365 Sum_probs=116.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCC----eeEEEEECCcccC----hhccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE----TRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~----~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~ 73 (413)
+++|+|+++++||+++|+||||||||||+++|+|..++.. ..|++.++|.+.. ...++.++|++|+..+++.
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 104 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH 104 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC
Confidence 6899999999999999999999999999999999986421 2366666665542 1345679999999999999
Q ss_pred CCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 74 LTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 74 lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
+|++||+.+... +++. +||++||++|+.+|++++|||||+||
T Consensus 105 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~L 184 (257)
T PRK14246 105 LSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184 (257)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccC
Confidence 999999986522 1111 18999999999999999999999999
Q ss_pred CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
|..++..+. -+.++.++..-+ |+.....+.+|+++.+.+|+..
T Consensus 185 D~~~~~~l~~~l~~~~~~~tiilvs------------h~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 185 DIVNSQAIEKLITELKNEIAIVIVS------------HNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred CHHHHHHHHHHHHHHhcCcEEEEEE------------CCHHHHHHhCCEEEEEECCEEE
Confidence 999998873 123445544422 2222223445666666666543
No 237
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=2.8e-26 Score=240.96 Aligned_cols=155 Identities=23% Similarity=0.382 Sum_probs=121.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... . .++.++|++|+..+++.+||
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 7899999999999999999999999999999999987 467999999987532 1 23469999999999999999
Q ss_pred HHHHHHHHH---------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308 77 TETLVFIAL---------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--- 124 (413)
Q Consensus 77 ~e~l~f~~~---------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--- 124 (413)
+|++.+... ++++ +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 999976321 1111 28999999999999999999999999999998883
Q ss_pred --HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 --LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 --ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+..+|.++..-+ |+.....+.||+++.+.+|...
T Consensus 184 ~~~~~~g~tiiivt------------Hd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 184 RELLAQGVGIVFIS------------HKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred HHHHHCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence 223566554422 3333333456777767666654
No 238
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.6e-26 Score=225.65 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=101.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh----h----ccccEEEEecCCc--
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR----T----VKRKTGFVAHSNV-- 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~-- 69 (413)
+|+|||+++++||+++|+|+||||||||+++|+|++++. ..+|+|.++|.++.. . .++.++||+|+..
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~ 101 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchh
Confidence 789999999999999999999999999999999998631 467999999987532 1 1346999999975
Q ss_pred cCCCCCHHHHHHHHHH-------------------------cCCc-----------------hhHHHHHHHHhhCCCEEE
Q 048308 70 FYLHLTVTETLVFIAL-------------------------FRLP-----------------IKRVSRAQELLINPSLLF 107 (413)
Q Consensus 70 ~~~~lTv~e~l~f~~~-------------------------~~~~-----------------~krvsia~~l~~~p~lll 107 (413)
+.+.+||.+++..... ++++ +||+.||++|+.+|++|+
T Consensus 102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 181 (330)
T PRK15093 102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI 181 (330)
T ss_pred cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 6788999988864210 1111 189999999999999999
Q ss_pred EeCCCCCCCHHHHHHH
Q 048308 108 LDEPASGLDSTIAKQI 123 (413)
Q Consensus 108 lDEPtsgLD~~~~~~i 123 (413)
+||||+|||+.++.++
T Consensus 182 lDEPts~LD~~~~~~i 197 (330)
T PRK15093 182 ADEPTNAMEPTTQAQI 197 (330)
T ss_pred EeCCCCcCCHHHHHHH
Confidence 9999999999999888
No 239
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=1.4e-26 Score=251.69 Aligned_cols=158 Identities=27% Similarity=0.406 Sum_probs=125.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+|+ .|++
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~ 556 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLR 556 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHH
Confidence 7999999999999999999999999999999999998 467999999988753 46788999999999886 5999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++||||||+||+.+
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 99986421 0 111 289999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
..++. + +.+|+++..= .|.... ...||.++.+.+|+..+.++.
T Consensus 637 e~~i~~~l~~~~~~~T~iiI------------tHrl~~-~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 637 EERFKDRLKRWLAGKTLVLV------------THRTSL-LDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEE------------ecCHHH-HHhCCEEEEEeCCEEEeeCCH
Confidence 99883 2 2345655442 223221 244778888888876655443
No 240
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=5.4e-27 Score=206.07 Aligned_cols=152 Identities=28% Similarity=0.453 Sum_probs=122.9
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv 76 (413)
+||+++|+.+++||..+|.||||||||||+|+++.+.. +.+|.+++.|++.+ +.++.+++|+.|.+.+|+. ||
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 48999999999999999999999999999999999987 57899999999875 3678889999999999976 99
Q ss_pred HHHHHHHHHcCC-----------------c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 77 TETLVFIALFRL-----------------P---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 77 ~e~l~f~~~~~~-----------------~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
++||.|..+.+- | +||.+|+|.|...|++|+||||||.||..++.+|-
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie 173 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence 999988654432 1 28999999999999999999999999999999882
Q ss_pred --Hh----cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308 125 --LN----SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167 (413)
Q Consensus 125 --ll----~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~ 167 (413)
++ .+...+.- +.|+..+..+.||.++-+..|
T Consensus 174 ~mi~~~v~~q~vAv~W------------iTHd~dqa~rha~k~itl~~G 210 (223)
T COG4619 174 EMIHRYVREQNVAVLW------------ITHDKDQAIRHADKVITLQPG 210 (223)
T ss_pred HHHHHHhhhhceEEEE------------EecChHHHhhhhheEEEeccC
Confidence 11 12211111 345655556667777666554
No 241
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.93 E-value=5.2e-26 Score=214.41 Aligned_cols=130 Identities=28% Similarity=0.400 Sum_probs=107.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++ .|++
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 98 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVY 98 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHH
Confidence 7899999999999999999999999999999999986 467999999986532 23567999999988886 4999
Q ss_pred HHHHHHHHc-----------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 78 ETLVFIALF-----------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 78 e~l~f~~~~-----------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
||+.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 999764211 111 18999999999999999999999999999998874
Q ss_pred ----Hhc-CCcEEEe
Q 048308 125 ----LNS-EGNSLHV 134 (413)
Q Consensus 125 ----ll~-~G~~v~~ 134 (413)
+.+ .|.++..
T Consensus 179 ~l~~~~~~~~~tvii 193 (225)
T PRK10247 179 IIHRYVREQNIAVLW 193 (225)
T ss_pred HHHHHHHhcCCEEEE
Confidence 223 3665544
No 242
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-26 Score=235.47 Aligned_cols=119 Identities=30% Similarity=0.458 Sum_probs=105.0
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+||+++||++++||-+||+|+|||||||++|+|-+.++ .+|+|.+||+++++ ..|+.+||||||..+|. -||
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTI 441 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTI 441 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhH
Confidence 48999999999999999999999999999999999885 68999999998753 56778999999988885 599
Q ss_pred HHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
.+|+.+... .++| +||+++||++++||+++++|||||.||+.
T Consensus 442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~ 521 (591)
T KOG0057|consen 442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521 (591)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchh
Confidence 999987521 1122 28999999999999999999999999999
Q ss_pred HHHHH
Q 048308 119 IAKQI 123 (413)
Q Consensus 119 ~~~~i 123 (413)
+..++
T Consensus 522 TE~~i 526 (591)
T KOG0057|consen 522 TEREI 526 (591)
T ss_pred hHHHH
Confidence 99988
No 243
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=3.5e-26 Score=241.12 Aligned_cols=130 Identities=32% Similarity=0.506 Sum_probs=109.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+|+. |++|
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~e 426 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRD 426 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHH
Confidence 7999999999999999999999999999999999997 477999999987653 456789999999998855 9999
Q ss_pred HHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 79 TLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 79 ~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|+.+... . ++| +||++|||+|+.+|++++||||||+||+.+.
T Consensus 427 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 427 NLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9987410 0 111 2899999999999999999999999999999
Q ss_pred HHHH--Hh--cCCcEEEe
Q 048308 121 KQIL--LN--SEGNSLHV 134 (413)
Q Consensus 121 ~~i~--ll--~~G~~v~~ 134 (413)
.++. +. .+|+++..
T Consensus 507 ~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 507 SELLEDLLAALSGKTVVV 524 (529)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 9984 32 34665543
No 244
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8e-26 Score=218.26 Aligned_cols=157 Identities=21% Similarity=0.250 Sum_probs=119.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC--------hhccccEEEEecCCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS--------RTVKRKTGFVAHSNVF 70 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~~~ 70 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+.. ...++.++|++|+..+
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 110 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNP 110 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcC
Confidence 789999999999999999999999999999999997642 26899999987542 1235679999999888
Q ss_pred CCCCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308 71 YLHLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 71 ~~~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPt 112 (413)
++. ||+||+.+... +++. +||+.||++|+.+|++++|||||
T Consensus 111 ~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 189 (265)
T PRK14252 111 FPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT 189 (265)
T ss_pred Ccc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 875 99999976421 1110 18999999999999999999999
Q ss_pred CCCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 113 SGLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 113 sgLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+|||..++..+. -++++.++..- .|+.+.....+|+++.+.+|....
T Consensus 190 ~gLD~~~~~~l~~~l~~l~~~~tiiiv------------th~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 190 SALDPIATASIEELISDLKNKVTILIV------------THNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCEEEEE------------ecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999998873 11334444432 233333335577777777776543
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=1.8e-26 Score=214.11 Aligned_cols=121 Identities=27% Similarity=0.455 Sum_probs=101.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|+..++ ..|++||+.
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g---------~i~~~~q~~~l~-~~t~~enl~ 87 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG---------SIAYVSQEPWIQ-NGTIRENIL 87 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC---------EEEEEecCchhc-cCcHHHHhc
Confidence 7999999999999999999999999999999999987 4679999998 599999998877 569999997
Q ss_pred HHHH------------cCC-------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 82 FIAL------------FRL-------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 82 f~~~------------~~~-------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+... +++ + +||+.||++|+.+|+++++||||+|||+.++..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 167 (204)
T cd03250 88 FGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167 (204)
T ss_pred cCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 6310 010 0 18999999999999999999999999999988763
Q ss_pred --Hh----cCCcEEEe
Q 048308 125 --LN----SEGNSLHV 134 (413)
Q Consensus 125 --ll----~~G~~v~~ 134 (413)
++ .+|.++-.
T Consensus 168 ~~ll~~~~~~~~tvi~ 183 (204)
T cd03250 168 ENCILGLLLNNKTRIL 183 (204)
T ss_pred HHHHHHhccCCCEEEE
Confidence 22 34666555
No 246
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.4e-26 Score=238.26 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=120.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++||+|+..+++.+||
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV 97 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence 7899999999999999999999999999999999987 467999999987642 123569999999999999999
Q ss_pred HHHHHHHHH--------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 77 TETLVFIAL--------------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 77 ~e~l~f~~~--------------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
+|++.+... +++. +||+.||++|+.+|++++|||||+|||
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD 177 (510)
T PRK09700 98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177 (510)
T ss_pred HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999976321 0110 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 117 STIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 117 ~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.++..+. +-++|.++..-+ |+.....+.||+++.+.+|+..
T Consensus 178 ~~~~~~l~~~l~~l~~~g~tiiivs------------Hd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 178 NKEVDYLFLIMNQLRKEGTAIVYIS------------HKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEe
Confidence 99998883 223466554422 3333334556666666666543
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=3.6e-26 Score=221.86 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=120.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+.+++||+++|+|+||||||||+++|+|.++ .+|+|.++|.+... ..++.++|++|++.+++ .|++
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~ 94 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFR 94 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHH
Confidence 7999999999999999999999999999999999985 46999999987632 34567999999999887 4999
Q ss_pred HHHHHHH------------HcCC-------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIA------------LFRL-------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~------------~~~~-------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.... .+++ | +||+.|||+|+.+|++++|||||+|||+.+.
T Consensus 95 ~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~ 174 (275)
T cd03289 95 KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 (275)
T ss_pred HHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 9996321 1111 1 2899999999999999999999999999999
Q ss_pred HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
..+. + +.+|+++..-+ |+...... +|+++.+.+|.+...++
T Consensus 175 ~~l~~~l~~~~~~~tii~is------------H~~~~i~~-~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 175 QVIRKTLKQAFADCTVILSE------------HRIEAMLE-CQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHhcCCCEEEEEE------------CCHHHHHh-CCEEEEecCCeEeecCC
Confidence 8762 1 23465554422 33322223 77777777776654443
No 248
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=8.2e-26 Score=236.88 Aligned_cols=157 Identities=25% Similarity=0.314 Sum_probs=122.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++++.+|+|.++|++... ..++.++||+|+..+++.+||
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 95 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSV 95 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcH
Confidence 789999999999999999999999999999999998643358999999987642 124569999999989999999
Q ss_pred HHHHHHHHHc-----------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIALF-----------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~~-----------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+|++.+.... +++ +||++||++|+.+|++++|||||+|||+.
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~ 175 (500)
T TIGR02633 96 AENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK 175 (500)
T ss_pred HHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 9999764211 000 18999999999999999999999999999
Q ss_pred HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
++..+. +.++|.++..-+ |+.....+.||+++.+.+|+..
T Consensus 176 ~~~~l~~~l~~l~~~g~tviiit------------Hd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 176 ETEILLDIIRDLKAHGVACVYIS------------HKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEe------------CcHHHHHHhCCEEEEEeCCeEe
Confidence 999883 224566554422 3333334556667766666543
No 249
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=3.4e-26 Score=243.56 Aligned_cols=159 Identities=27% Similarity=0.428 Sum_probs=126.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|+..+|+ -|++
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 431 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLR 431 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHH
Confidence 7999999999999999999999999999999999987 467999999988653 46778999999998886 5999
Q ss_pred HHHHHHH-------------HcCC------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIA-------------LFRL------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~-------------~~~~------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
||+.+.. ..++ | +||++|||+|+.+|++++||||||+||+.++
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9998641 0000 2 2899999999999999999999999999999
Q ss_pred HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
..+. + +.+|+++..= .|..... ..+|.++.+.+|++.+.++.+
T Consensus 512 ~~i~~~l~~~~~~~tviii------------tHr~~~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 512 RQILELLAEHAQNKTVLMI------------THRLTGL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHHcCCCEEEEE------------ecChhHH-HhCCEEEEEeCCeEEEeCCHH
Confidence 9884 2 2356665542 2333222 348888888888876655443
No 250
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-26 Score=208.17 Aligned_cols=175 Identities=30% Similarity=0.409 Sum_probs=132.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|++||+.++|||+++|+||||||||||||+|+|.+. +.+|++.+||.+.+. ...+..+..+|+..+-...||
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 47899999999999999999999999999999999887 467999999998753 345678899999988777899
Q ss_pred HHHHHHHHHcC----C-------------------------------chhHHHHHHHHhh------CCCEEEEeCCCCCC
Q 048308 77 TETLVFIALFR----L-------------------------------PIKRVSRAQELLI------NPSLLFLDEPASGL 115 (413)
Q Consensus 77 ~e~l~f~~~~~----~-------------------------------~~krvsia~~l~~------~p~llllDEPtsgL 115 (413)
+|-+.+...-. . .+|||.+||.|+. ++++||||||||.|
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 99998754211 0 1289999999984 44599999999999
Q ss_pred CHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHHH
Q 048308 116 DSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYK 189 (413)
Q Consensus 116 D~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (413)
|...+..++ +-++|--|-. +=|+.....-.||.++-+.+|++...+++...-..+.+...|.
T Consensus 173 Di~HQ~~tl~laR~la~~g~~V~~------------VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg 239 (259)
T COG4559 173 DIAHQHHTLRLARQLAREGGAVLA------------VLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYG 239 (259)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEE------------EEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhC
Confidence 999998874 3334422111 2245445556688888888888776666555444555555554
No 251
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.93 E-value=9.5e-26 Score=211.12 Aligned_cols=149 Identities=21% Similarity=0.214 Sum_probs=113.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE-ECCcccChhccccEEEEecCCccCCCCCHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID-YNNNPLSRTVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
++|+|||+++++||+++|+||||||||||+|+|+|..+ +.+|+|. ++|... .+.++..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 47999999999999999999999999999999999987 4679996 776432 12345667889999999
Q ss_pred HHHHHHc-CC---------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc
Q 048308 80 LVFIALF-RL---------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS 127 (413)
Q Consensus 80 l~f~~~~-~~---------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~ 127 (413)
+.+.... +. + +||+++|++|+.+|++++|||||+++|+.++..+. +..
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALAC 149 (213)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 9875431 11 0 18999999999999999999999999999988774 211
Q ss_pred --CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 128 --EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 128 --~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
+++.+.. ..|+.......||+++.+.+|+....
T Consensus 150 ~~~~~~ii~------------vsH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 150 QLQQKGLIV------------LTHNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred HhhCCcEEE------------EECCHHHHHHhcCeeEEEECCeEEEe
Confidence 2333222 23444444566888888888876543
No 252
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=1.1e-25 Score=215.54 Aligned_cols=156 Identities=26% Similarity=0.384 Sum_probs=115.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-----cCh----h----ccccEEEEecCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-----LSR----T----VKRKTGFVAHSN 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-----~~~----~----~~~~~~~v~q~~ 68 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+ ... . .++.++|++|++
T Consensus 18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 6899999999999999999999999999999999987 467999999875 321 1 134689999986
Q ss_pred c--cCCCCCHHHHHHHHH--------------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308 69 V--FYLHLTVTETLVFIA--------------------LFRLP---------------IKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 69 ~--~~~~lTv~e~l~f~~--------------------~~~~~---------------~krvsia~~l~~~p~llllDEP 111 (413)
. +.+.+|+.|++.+.. .+++. +||++||++|+.+|++++||||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4 455678888874311 11111 1899999999999999999999
Q ss_pred CCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 112 ASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 112 tsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|+|||+.++..+. +.. .|.++-.-+ |+.+.....+|+++.+.+|....
T Consensus 176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs------------H~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVT------------HDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999998883 223 265554422 22222234567777777766543
No 253
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.2e-26 Score=220.01 Aligned_cols=137 Identities=28% Similarity=0.423 Sum_probs=120.1
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------hhccccEEEEecCCccCCCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------RTVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~~~~~~l 74 (413)
++|+|++++.|||..|||-||||||||+++++++.+ +..|+|+++|.++. +..+++++.|+|...++|+.
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 689999999999999999999999999999999987 47899999998753 13456799999999999999
Q ss_pred CHHHHHHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||.||..|...++. | +|||.+||||+++|++|++|||+|.||+-.+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 99999999754421 1 18999999999999999999999999998775
Q ss_pred HH--------------------------------HHhcCCcEEEecCcchHh
Q 048308 122 QI--------------------------------LLNSEGNSLHVGKGDGVM 141 (413)
Q Consensus 122 ~i--------------------------------~ll~~G~~v~~G~~~~~~ 141 (413)
++ .+|++|++|-.|++++++
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 55 488999999999998874
No 254
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=3.4e-26 Score=219.97 Aligned_cols=157 Identities=17% Similarity=0.295 Sum_probs=120.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||+++|+|+||||||||+|+|+|+++ +.+|+|.++|.+..+ ..++.++|++|+..+++ .|++
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~ 112 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIR 112 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHH
Confidence 7899999999999999999999999999999999987 467999999987642 34567999999987776 4888
Q ss_pred HHHHHHH------------HcC-------C------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIA------------LFR-------L------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~------------~~~-------~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|++.... ..+ + .+||+.||++|+.+|++++|||||+|||+.++
T Consensus 113 ~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 113 FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192 (257)
T ss_pred HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 8874310 000 1 02899999999999999999999999999999
Q ss_pred HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
..+. + +.+|.++.. ..|+.+.... +|+++.+.+|++...++
T Consensus 193 ~~l~~~l~~~~~~~tiii------------~sh~~~~~~~-~dri~~l~~G~i~~~g~ 237 (257)
T cd03288 193 NILQKVVMTAFADRTVVT------------IAHRVSTILD-ADLVLVLSRGILVECDT 237 (257)
T ss_pred HHHHHHHHHhcCCCEEEE------------EecChHHHHh-CCEEEEEECCEEEEeCC
Confidence 8773 1 234555544 2344433333 88888888887654433
No 255
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.2e-26 Score=252.40 Aligned_cols=139 Identities=29% Similarity=0.503 Sum_probs=119.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+||+|+|+.+++||.+||+|||||||||+++.|.+.++ +.+|+|.++|.++.+ ..+.++|.|.|++.+| ..|+
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI 443 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTI 443 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhh-cccH
Confidence 48999999999999999999999999999999999998 578999999998753 5677899999999877 5799
Q ss_pred HHHHHHHH------------H--------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIA------------L--------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~------------~--------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||+.|.. + ..+| +||++|||+|+.||++|+||||||+||+.
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~ 523 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 523 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH
Confidence 99998742 0 0111 28999999999999999999999999999
Q ss_pred HHHHH-----------------------------HHhcCCcEEEecCcchHhH
Q 048308 119 IAKQI-----------------------------LLNSEGNSLHVGKGDGVMS 142 (413)
Q Consensus 119 ~~~~i-----------------------------~ll~~G~~v~~G~~~~~~~ 142 (413)
+...| +++.+|++|..|+++|...
T Consensus 524 se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 524 SERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 99876 4777888888888777654
No 256
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=3.4e-26 Score=243.25 Aligned_cols=161 Identities=30% Similarity=0.421 Sum_probs=131.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|++++|||.+||+||||||||||+|.|.|.+++ .+|+|.+||.++.+ ..++.+++|+|+..+|. -||
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI 419 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTI 419 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccH
Confidence 379999999999999999999999999999999999974 68999999988753 56788999999999987 799
Q ss_pred HHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||+.++.. .++| +||++|||+++.+|++++||||||+||+.
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 999988621 0122 28999999999999999999999999999
Q ss_pred HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308 119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ 177 (413)
Q Consensus 119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~ 177 (413)
+...+. + +.+|+++.. +-|......+ ||.++.+.+|++.+.+++++
T Consensus 500 tE~~I~~~l~~l~~~rT~ii------------IaHRlsti~~-aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 500 TEALIQDALKKLLKGRTTLI------------IAHRLSTIKN-ADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred hHHHHHHHHHHHhcCCEEEE------------EeccHhHHHh-CCEEEEEECCEEEEecCHHH
Confidence 998883 2 346775544 2344433345 99999999998766655444
No 257
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.6e-26 Score=236.24 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=123.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|++... ..++.++|++|+..+++.+||
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence 7899999999999999999999999999999999987 467999999987632 234579999999988999999
Q ss_pred HHHHHHHHH----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 77 TETLVFIAL----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 77 ~e~l~f~~~----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+|++.+... +++. +||+.||++|+.+|++++|||||+|||+.++
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 999976421 0110 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
..+. +.++|.++..- .|+.+...+.||+++.+.+|+...
T Consensus 171 ~~l~~~l~~l~~~g~tvii~------------tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 171 NHLFTIIRKLKERGCGIVYI------------SHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEE------------ecCHHHHHHhCCEEEEEECCEEEe
Confidence 9883 22356655442 234434445677777777776544
No 258
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=8.8e-26 Score=199.05 Aligned_cols=155 Identities=34% Similarity=0.472 Sum_probs=123.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h-----hccccEEEEecCCccCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R-----TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~~~~~ 72 (413)
.||++|++.+++||-++|+|||||||||||-+++|+.. +.+|+|.+-|++.. + ...+.+|+|+|...+.|
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip 101 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP 101 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence 38999999999999999999999999999999999987 47799999999863 1 23457999999999999
Q ss_pred CCCHHHHHHHHHHcCCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 73 HLTVTETLVFIALFRLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 73 ~lTv~e~l~f~~~~~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
+||..||+...+.++-. .|||+|||+++..|++||.||||-+||..+
T Consensus 102 ~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T 181 (228)
T COG4181 102 NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 (228)
T ss_pred cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence 99999999876554321 189999999999999999999999999999
Q ss_pred HHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 120 AKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 120 ~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+|. +.. .|.+.-.-+ |++. --.-||..+.+.+|+..
T Consensus 182 g~~iaDLlF~lnre~G~TlVlVT------------HD~~-LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 182 GDKIADLLFALNRERGTTLVLVT------------HDPQ-LAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHHHHhhhcCceEEEEe------------CCHH-HHHhhhheeeeecceec
Confidence 99983 112 366554433 2211 12336666666666554
No 259
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.2e-26 Score=233.32 Aligned_cols=158 Identities=25% Similarity=0.375 Sum_probs=131.9
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lT 75 (413)
++|+|||++++|||+++|+|.||||||||+|+|+|.++ +.+|+|.++|++.. +.....+..|.|+..+.|+||
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~Ls 99 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS 99 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCcc
Confidence 47999999999999999999999999999999999998 57899999999764 234557999999999999999
Q ss_pred HHHHHHHHHHcC-----------------------C---c-----------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 76 VTETLVFIALFR-----------------------L---P-----------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 76 v~e~l~f~~~~~-----------------------~---~-----------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
|-||+.+....+ . | +|-|.||+||..++++++|||||+.|+..
T Consensus 100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~ 179 (500)
T COG1129 100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179 (500)
T ss_pred HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 999996543211 1 1 17899999999999999999999999999
Q ss_pred HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
.+.++. +-++|..+-+ +.|..++....||.++.+.+|+..++
T Consensus 180 E~~~Lf~~ir~Lk~~Gv~ii~------------ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 180 ETERLFDLIRRLKAQGVAIIY------------ISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHHHHHHhCCCEEEE------------EcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 998883 5567876555 34666667788999999988876543
No 260
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.93 E-value=3.6e-26 Score=215.32 Aligned_cols=120 Identities=27% Similarity=0.461 Sum_probs=102.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++ .||+
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 105 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQ 105 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHH
Confidence 7999999999999999999999999999999999987 467999999986532 33567999999987775 5999
Q ss_pred HHHHHHHH----------------------c--CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL----------------------F--RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~----------------------~--~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... + ++. +||+.||++|+.+|++++|||||+|||+.+
T Consensus 106 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 185 (226)
T cd03248 106 DNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185 (226)
T ss_pred HHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99975310 0 111 189999999999999999999999999999
Q ss_pred HHHHH
Q 048308 120 AKQIL 124 (413)
Q Consensus 120 ~~~i~ 124 (413)
+..+.
T Consensus 186 ~~~l~ 190 (226)
T cd03248 186 EQQVQ 190 (226)
T ss_pred HHHHH
Confidence 99883
No 261
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=219.65 Aligned_cols=122 Identities=25% Similarity=0.404 Sum_probs=102.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~ 72 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|.+++ .+.+|+|.++|.+... ..++.++|++|+..+++
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 139 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP 139 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence 78999999999999999999999999999999999752 1468999999986532 23567999999988777
Q ss_pred CCCHHHHHHHHHH--------------------------------cCCc------------------hhHHHHHHHHhhC
Q 048308 73 HLTVTETLVFIAL--------------------------------FRLP------------------IKRVSRAQELLIN 102 (413)
Q Consensus 73 ~lTv~e~l~f~~~--------------------------------~~~~------------------~krvsia~~l~~~ 102 (413)
.||+||+.+... ++++ +||++||++|+.+
T Consensus 140 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~ 218 (305)
T PRK14264 140 -KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218 (305)
T ss_pred -ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 599999986421 0110 1899999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHH
Q 048308 103 PSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 103 p~llllDEPtsgLD~~~~~~i~ 124 (413)
|++|+|||||+|||..++..+.
T Consensus 219 p~lLLLDEPtsgLD~~~~~~l~ 240 (305)
T PRK14264 219 PEVILMDEPASALDPIATSKIE 240 (305)
T ss_pred CCEEEEeCCcccCCHHHHHHHH
Confidence 9999999999999999998883
No 262
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=240.67 Aligned_cols=121 Identities=26% Similarity=0.357 Sum_probs=103.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+|+|||+++++||+++|+|+||||||||+|+|+|.++ +.+|+|.++|.++.. ..++.++||+|+. .+++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 6899999999999999999999999999999999987 467999999986532 1356799999986 5889
Q ss_pred CCCHHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 73 HLTVTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 73 ~lTv~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
.+||.|++.+.... +++ +||+.||++|+.+|++|+|||||+|||.
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99999998764311 111 1899999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 118 TIAKQIL 124 (413)
Q Consensus 118 ~~~~~i~ 124 (413)
.++.+++
T Consensus 497 ~~~~~i~ 503 (623)
T PRK10261 497 SIRGQII 503 (623)
T ss_pred HHHHHHH
Confidence 9998883
No 263
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=6.9e-26 Score=241.86 Aligned_cols=158 Identities=23% Similarity=0.337 Sum_probs=126.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+|+|+|++++ .+|+|.+||.+..+ ..++.++||+|++.+|+ -|++
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~ 426 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIE 426 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHH
Confidence 79999999999999999999999999999999999984 67999999987653 45678999999998885 5999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++||||||+||+.+
T Consensus 427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99987420 0 111 289999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
+..+. + +.+++++..=+ |+... ..-+|+++.+.+|...+.++.
T Consensus 507 ~~~i~~~l~~~~~~~tvIiit------------Hr~~~-~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 507 EAKVKAALDELMKGRTTFIIA------------HRLST-VRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHhcCCEEEEEE------------ecHHH-HHhCCEEEEEECCEEEEeCCH
Confidence 99884 2 22566665532 22211 234888888888877655443
No 264
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.9e-26 Score=238.63 Aligned_cols=155 Identities=22% Similarity=0.278 Sum_probs=123.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+..+++.+||
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence 7899999999999999999999999999999999987 467999999987531 235679999999989999999
Q ss_pred HHHHHHHHH---c-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 77 TETLVFIAL---F-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 77 ~e~l~f~~~---~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+.+... . +++ +||+.||++|+.+|++++|||||+|||+.++
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (501)
T PRK11288 97 AENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 (501)
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence 999987421 0 110 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
..+. +.++|.++..-+ |+.....+.||+++.+.+|+..
T Consensus 177 ~~l~~~l~~~~~~g~tiiiit------------Hd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 177 EQLFRVIRELRAEGRVILYVS------------HRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence 8884 223576655532 3333334557777777777654
No 265
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=7.8e-26 Score=239.36 Aligned_cols=157 Identities=31% Similarity=0.456 Sum_probs=124.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+++. |++
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~ 409 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVA 409 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHH
Confidence 7999999999999999999999999999999999987 467999999987642 456789999999988875 999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++|||||+|||+.+
T Consensus 410 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 410 ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 99974210 0 111 189999999999999999999999999999
Q ss_pred HHHHH--H--h-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 120 AKQIL--L--N-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 120 ~~~i~--l--l-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
+.++. + + .+|+++..-+ |+... .+.+|.++.+.+|+....++
T Consensus 490 ~~~i~~~l~~~~~~~~tvi~it------------h~~~~-~~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 490 EQALANAIKALKARGITVVVIT------------HRPSL-LGCVDKILVLQDGRIARFGE 536 (544)
T ss_pred HHHHHHHHHHHhhCCCEEEEEe------------CCHHH-HHhCCEEEEEECCEEEeeCC
Confidence 99884 2 2 2566655522 23221 24478888888887655443
No 266
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=4.1e-26 Score=204.83 Aligned_cols=113 Identities=28% Similarity=0.378 Sum_probs=94.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+++|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------- 82 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------- 82 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence 7899999999999999999999999999999999987 467999999987542 23557999998
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 77 TETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 77 ~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
.-...+||+++|++|+.+|++++|||||+|||..++.++. +..+|.++..
T Consensus 83 --------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 137 (163)
T cd03216 83 --------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF 137 (163)
T ss_pred --------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1111249999999999999999999999999999999883 2234665544
No 267
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=1.6e-25 Score=260.09 Aligned_cols=142 Identities=26% Similarity=0.371 Sum_probs=120.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+.+++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++... ..++.+||++|++.+++.+||+|
T Consensus 1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 7999999999999999999999999999999999987 467999999987642 34567999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-- 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-- 123 (413)
++.+.+.++ .+ +||+++|++|+.+|++++|||||+|||+.++..+
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~ 2111 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN 2111 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 998754432 11 1799999999999999999999999999999887
Q ss_pred -----------------------------HHhcCCcEEEecCcchHhHHHH
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGVMSYFV 145 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~~~~f~ 145 (413)
.+|.+|+++..|++++....|.
T Consensus 2112 lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2112 TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 3556677777777766665553
No 268
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=7.8e-26 Score=240.60 Aligned_cols=158 Identities=27% Similarity=0.466 Sum_probs=125.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++|++|++.+++ .|++
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~ 406 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVA 406 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHH
Confidence 7999999999999999999999999999999999987 467999999987642 45678999999998886 4999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++|||||+|||+.+
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 99976410 0 111 189999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
+.++. + +.+|+++..-+ |+.+. ...+|+++.+.+|+....++.
T Consensus 487 ~~~i~~~l~~~~~~~tii~it------------H~~~~-~~~~d~i~~l~~G~i~~~g~~ 533 (569)
T PRK10789 487 EHQILHNLRQWGEGRTVIISA------------HRLSA-LTEASEILVMQHGHIAQRGNH 533 (569)
T ss_pred HHHHHHHHHHHhCCCEEEEEe------------cchhH-HHcCCEEEEEeCCEEEEecCH
Confidence 99884 2 23567665522 22222 233788888888877655443
No 269
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=4.2e-25 Score=211.40 Aligned_cols=157 Identities=25% Similarity=0.292 Sum_probs=117.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccc-cEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKR-KTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~-~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+|+||||||||+++|+|+....+.+|+|.++|.+... ..++ .++|++|+..+++.+|+
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 101 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSN 101 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccH
Confidence 789999999999999999999999999999999973112468999999987642 1222 47899999989999999
Q ss_pred HHHHHHHHH--------------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 77 TETLVFIAL--------------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 77 ~e~l~f~~~--------------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+|++.+... ++++ +||+.||++|+.+|++++|||||+|
T Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 181 (252)
T CHL00131 102 ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181 (252)
T ss_pred HHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 998764321 0111 1899999999999999999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCC-hhHHHHHhhCCccC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMN-PSDFLLDLANGVVS 170 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n-~ad~~~~~~~~~~~ 170 (413)
||..++..+. +..+|.++..-+ |+...... ++|+++.+.+|+..
T Consensus 182 LD~~~~~~l~~~l~~~~~~g~tii~~t------------H~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 182 LDIDALKIIAEGINKLMTSENSIILIT------------HYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEe------------cCHHHHHhhhCCEEEEEeCCEEE
Confidence 9999998883 223576665533 23222223 25666666666543
No 270
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=5e-26 Score=228.94 Aligned_cols=157 Identities=27% Similarity=0.370 Sum_probs=133.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lTv 76 (413)
+++|||+++++||+.||+|+||||||||+|+|.|.++ +.+|+|.++|++.. +..+..||.|.|+..+++++||
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 5789999999999999999999999999999999998 47899999999863 2456679999999999999999
Q ss_pred HHHHHHHHHc----------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 77 TETLVFIALF----------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 77 ~e~l~f~~~~----------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
.||+..+..- +++ +|||.|-++|..+|++|||||||+-|-+..+
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~ 176 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 9999775421 111 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
++++ +-++|+.|-+ +.|...+.+..||.+..+..|++.+.
T Consensus 177 ~~lf~~l~~l~~~G~tIi~------------ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 177 DELFEILRRLAAEGKTIIF------------ITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHHHHHHHHHHHCCCEEEE------------EeccHHHHHHhhCeeEEEeCCeEEee
Confidence 9984 5568988777 44666667788888888888876543
No 271
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.5e-26 Score=215.31 Aligned_cols=117 Identities=31% Similarity=0.479 Sum_probs=99.8
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------hhccccEEEEecCCccCCCCCH
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------RTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~~~~~~lTv 76 (413)
++++..+.-.++||-|+||||||||+|+|+|+.++ .+|.|.+||.... +..+|.+|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 34555555479999999999999999999999984 6799999998642 2457889999999999999999
Q ss_pred HHHHHHHHHcC--------------------Cc-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALFR--------------------LP-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~~--------------------~~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.||.|..... .| +|||+|||||+++|++|+||||.+.||-..+.++
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 99999875321 11 3899999999999999999999999999888777
No 272
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=8.1e-26 Score=245.69 Aligned_cols=159 Identities=25% Similarity=0.438 Sum_probs=126.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+|+|+|.+++ .+|+|.+||.+..+ ..++.++||+|++.+++ .|++
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~ 548 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIR 548 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHH
Confidence 79999999999999999999999999999999999974 67999999998653 45778999999988875 5999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++|||||||||+.+
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 99986310 0 111 189999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
+.++. + +.+|+++.. +.|..... ..+|.++.+.+|++...++.+
T Consensus 629 ~~~i~~~l~~~~~~~t~i~------------itH~~~~~-~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 629 EALIMRNMREICRGRTVII------------IAHRLSTV-RACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHhCCCEEEE------------EeCChHHH-HhCCEEEEEeCCEEEEeCCHH
Confidence 99884 2 235666544 23443333 338888888888876555433
No 273
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.2e-26 Score=219.50 Aligned_cols=131 Identities=25% Similarity=0.382 Sum_probs=103.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhc-cccEEEEecCCccC--CCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV-KRKTGFVAHSNVFY--LHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-~~~~~~v~q~~~~~--~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+..... ++.++|++|+..+. ...+++|
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 7899999999999999999999999999999999987 46799999998764432 34599999986542 2346777
Q ss_pred HHHHHH-----------------------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 79 TLVFIA-----------------------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 79 ~l~f~~-----------------------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
++.+.. .+++. +||+.||++|+.+|++++|||||+|||+.++.
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 654210 11111 18999999999999999999999999999999
Q ss_pred HHH-----HhcCCcEEEe
Q 048308 122 QIL-----LNSEGNSLHV 134 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~ 134 (413)
.+. +.++|.++..
T Consensus 180 ~l~~~L~~~~~~g~tvii 197 (272)
T PRK15056 180 RIISLLRELRDEGKTMLV 197 (272)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 883 2345776655
No 274
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=4.6e-25 Score=210.51 Aligned_cols=133 Identities=31% Similarity=0.403 Sum_probs=103.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|.+... ..++.++|++|+..+++.+|+
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 95 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSN 95 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhH
Confidence 789999999999999999999999999999999985211467999999986532 123469999999877777665
Q ss_pred HHHHHHH--------------------------HHcCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 77 TETLVFI--------------------------ALFRLP----------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 77 ~e~l~f~--------------------------~~~~~~----------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
.+++.+. ..++++ +||++||++|+.+|++++|||||+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~ 175 (248)
T PRK09580 96 QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 175 (248)
T ss_pred HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 5443211 001111 2899999999999999999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEe
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~ 134 (413)
||..++..+. +.++|.++..
T Consensus 176 LD~~~~~~l~~~l~~l~~~~~tiii 200 (248)
T PRK09580 176 LDIDALKIVADGVNSLRDGKRSFII 200 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999998884 2234666555
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=2.6e-25 Score=234.65 Aligned_cols=155 Identities=27% Similarity=0.367 Sum_probs=121.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ .+|+|.++|.++.. ..++.++|++|+. .+++
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 7899999999999999999999999999999999974 57999999986532 1245699999986 4788
Q ss_pred CCCHHHHHHHHHHc---------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIALF---------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~~---------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.+||+|++.+.... +++ +||+.||++|+.+|++++|||||+|||
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 89999999874321 111 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 117 STIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 117 ~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
..++..+. +..+ |.+|-.-+ |+.+.....||+++.+.+|++..
T Consensus 458 ~~~~~~l~~~l~~~~~~~~~tvi~vs------------Hd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 458 KTVQAQILALLKSLQQKHQLAYLFIS------------HDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEe------------CCHHHHHHhcCeEEEEECCEEEE
Confidence 99999884 2223 66555522 34333345577887777776543
No 276
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.92 E-value=1.2e-25 Score=239.07 Aligned_cols=159 Identities=24% Similarity=0.386 Sum_probs=125.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||.++|+|+||||||||+|+|+|.++ +.+|+|.+||.+.++ ..++.++|++|++.+|+ -|++
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~ 423 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIA 423 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHH
Confidence 7999999999999999999999999999999999997 467999999987642 45678999999998875 5999
Q ss_pred HHHHHHHH--c-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 78 ETLVFIAL--F-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 78 e~l~f~~~--~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
||+.+... . ++| +||++|||+++.+|++++||||||+||..
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 99986421 0 111 28999999999999999999999999999
Q ss_pred HHHHHH--Hh--cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 119 IAKQIL--LN--SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 119 ~~~~i~--ll--~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
++..+. +. .+++++..=+ |+. .....+|.++.+.+|+....++.+
T Consensus 504 ~~~~i~~~L~~~~~~~tiIiit------------H~~-~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 504 SERLVQAALERLMQGRTTLVIA------------HRL-STIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHHhCCCEEEEEe------------hhh-HHHHhCCEEEEEeCCEEEeeCCHH
Confidence 999984 22 2466655522 332 223447888888777766544433
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=2.7e-25 Score=208.31 Aligned_cols=119 Identities=27% Similarity=0.426 Sum_probs=100.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~ 73 (413)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..++.++|++|+..++ .
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~ 92 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-N 92 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc-c
Confidence 78999999999999999999999999999999999873 67999999986532 1245699999998777 5
Q ss_pred CCHHHHHHHHHH------------cCC------------------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 74 LTVTETLVFIAL------------FRL------------------P-------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 74 lTv~e~l~f~~~------------~~~------------------~-------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.|++||+.+... +++ + +||+.||++|+.+|++++|||||+|||
T Consensus 93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 799999975310 010 0 189999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
..++..+
T Consensus 173 ~~~~~~l 179 (218)
T cd03290 173 IHLSDHL 179 (218)
T ss_pred HHHHHHH
Confidence 9998765
No 278
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=3.1e-25 Score=257.78 Aligned_cols=141 Identities=26% Similarity=0.407 Sum_probs=123.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+.+++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.+||++|++.+++.+||+|
T Consensus 945 aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E 1022 (2272)
T TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAE 1022 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHH
Confidence 7899999999999999999999999999999999987 468999999987642 34567999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-- 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-- 123 (413)
++.|.+..+ .+ +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 1023 ~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~ 1102 (2272)
T TIGR01257 1023 HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 999865432 11 1899999999999999999999999999999877
Q ss_pred ----------------------------HHhcCCcEEEecCcchHhHHH
Q 048308 124 ----------------------------LLNSEGNSLHVGKGDGVMSYF 144 (413)
Q Consensus 124 ----------------------------~ll~~G~~v~~G~~~~~~~~f 144 (413)
.+|++|+++..|++..+...|
T Consensus 1103 lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1103 LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 467889999999988877655
No 279
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-25 Score=236.80 Aligned_cols=155 Identities=23% Similarity=0.371 Sum_probs=123.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecC---CccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHS---NVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~---~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..+ ..++.++|++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 68999999999999999999999999999999999874 67999999976532 234579999998 467889
Q ss_pred CCHHHHHHHHHH----------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeC
Q 048308 74 LTVTETLVFIAL----------------------------FRLP---------------IKRVSRAQELLINPSLLFLDE 110 (413)
Q Consensus 74 lTv~e~l~f~~~----------------------------~~~~---------------~krvsia~~l~~~p~llllDE 110 (413)
+||+|++.+... ++++ +||+.||++|+.+|++|+|||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999865311 1111 189999999999999999999
Q ss_pred CCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 111 PASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 111 PtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
||+|||..++..+. +.++|.++..- .|+.+.....||+++.+.+|+..
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~v------------sHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMV------------SSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEEE------------cCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999884 22457666552 34544455678888888777654
No 280
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=238.30 Aligned_cols=120 Identities=30% Similarity=0.376 Sum_probs=101.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-------------Ch----hc-cccEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-------------SR----TV-KRKTGF 63 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-------------~~----~~-~~~~~~ 63 (413)
+|+|||+++++||+++|+||||||||||+|+|+|++++ .+|+|.++|... .. .. ++.++|
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 78999999999999999999999999999999999874 579999988532 11 11 246999
Q ss_pred EecCC--ccCCCCCHHHHHHHHHHc--------------------CCc-----------------hhHHHHHHHHhhCCC
Q 048308 64 VAHSN--VFYLHLTVTETLVFIALF--------------------RLP-----------------IKRVSRAQELLINPS 104 (413)
Q Consensus 64 v~q~~--~~~~~lTv~e~l~f~~~~--------------------~~~-----------------~krvsia~~l~~~p~ 104 (413)
|+|++ .+++.+||+|++.+.... +++ +||+.||++|+.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 99987 678899999999875321 221 189999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHH
Q 048308 105 LLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 105 llllDEPtsgLD~~~~~~i 123 (413)
+|+|||||+|||+.++.++
T Consensus 189 lLllDEPt~~LD~~~~~~l 207 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQI 207 (623)
T ss_pred EEEEeCCCCccCHHHHHHH
Confidence 9999999999999999887
No 281
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=4.1e-25 Score=232.71 Aligned_cols=156 Identities=24% Similarity=0.390 Sum_probs=120.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC-Ccc---cCh-------hccccEEEEecCCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-NNP---LSR-------TVKRKTGFVAHSNVF 70 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~---~~~-------~~~~~~~~v~q~~~~ 70 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++ |.+ ... ..++.++|++|+..+
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 7899999999999999999999999999999999986 467999996 532 111 224569999999888
Q ss_pred CCCCCHHHHHHHHH------------------HcCCc-------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 71 YLHLTVTETLVFIA------------------LFRLP-------------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 71 ~~~lTv~e~l~f~~------------------~~~~~-------------------~krvsia~~l~~~p~llllDEPts 113 (413)
++.+||+|++.+.. .++++ +||+.||++|+.+|++|+|||||+
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999997521 11221 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 114 GLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|||+.++..+. +..+ |.++..- .|+.......+|+++.+.+|....
T Consensus 457 ~LD~~~~~~l~~~l~~l~~~~g~tvi~v------------sHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIV------------SHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEE------------eCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999984 2233 6655552 344444445677777777776543
No 282
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-25 Score=202.58 Aligned_cols=150 Identities=29% Similarity=0.353 Sum_probs=126.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lT 75 (413)
+||++||+++++||+.+||||||||||||.++|+|+-....++|+|.++|+++. +..+..+..-+|.+.-+|..|
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~ 97 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT 97 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence 489999999999999999999999999999999998543357899999999864 234556778889999999999
Q ss_pred HHHHHHHHHHcC----------------------Cc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 76 VTETLVFIALFR----------------------LP----------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 76 v~e~l~f~~~~~----------------------~~----------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+.+.|+.+...+ ++ +||..|+..++.+|++.+||||-||||.
T Consensus 98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDI 177 (251)
T COG0396 98 NSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177 (251)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccH
Confidence 999998665431 11 1899999999999999999999999999
Q ss_pred HHHHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCC
Q 048308 118 TIAKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEP 151 (413)
Q Consensus 118 ~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~ 151 (413)
.+-..| .+|.+|++|-.|.+ ++..+++.-||+|
T Consensus 178 dalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 888766 26778888888887 7777788777764
No 283
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=4.9e-25 Score=207.77 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=98.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||+||+.
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~enl~ 106 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL--------LGLGGGFNPELTGRENIY 106 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh--------hcccccCCCCCcHHHHHH
Confidence 7899999999999999999999999999999999987 467999999976421 111234457889999997
Q ss_pred HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+.... +++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~ 186 (224)
T cd03220 107 LNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186 (224)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 65321 110 18999999999999999999999999999998873
Q ss_pred -HhcCCcEEEe
Q 048308 125 -LNSEGNSLHV 134 (413)
Q Consensus 125 -ll~~G~~v~~ 134 (413)
+..+|.++..
T Consensus 187 ~~~~~~~tiii 197 (224)
T cd03220 187 ELLKQGKTVIL 197 (224)
T ss_pred HHHhCCCEEEE
Confidence 2345665554
No 284
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=1.5e-25 Score=214.85 Aligned_cols=114 Identities=32% Similarity=0.450 Sum_probs=96.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCC--CCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLH--LTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~--lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++| +..++|++|+..+++. .|++++
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~~~~~ 89 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLTVNRF 89 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------ccCEEEeccccccccccChhHHHH
Confidence 7899999999999999999999999999999999987 4679999987 2359999999877665 478877
Q ss_pred HHHH------------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 80 LVFI------------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 80 l~f~------------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.+. ..+++. +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus 90 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 90 LRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred HhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 6431 111221 28999999999999999999999999999998873
No 285
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=9.4e-25 Score=210.86 Aligned_cols=149 Identities=24% Similarity=0.332 Sum_probs=114.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|++++|||+++|+||||||||||+++|+|.++ +.+|+|.++|. ++++.|+..+.+.+|++|++.
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~---------~~~~~~~~~~~~~~tv~enl~ 107 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE---------VSVIAISAGLSGQLTGIENIE 107 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE---------EeEEecccCCCCCCcHHHHHH
Confidence 6899999999999999999999999999999999987 46799999984 346677777778899999987
Q ss_pred HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+.... ++. +||+.||++|+.+|++++|||||+|||+.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 108 FKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 64211 110 18999999999999999999999999999887773
Q ss_pred -HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 125 -LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 125 -ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
+..+|.++..-+ |+.......+|+++.+.+|.....+
T Consensus 188 ~~~~~g~tiIiis------------H~~~~i~~~~d~i~~l~~G~i~~~g 225 (264)
T PRK13546 188 EFKEQNKTIFFVS------------HNLGQVRQFCTKIAWIEGGKLKDYG 225 (264)
T ss_pred HHHHCCCEEEEEc------------CCHHHHHHHcCEEEEEECCEEEEeC
Confidence 223566555422 2322223456777777777665433
No 286
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=3.9e-25 Score=215.34 Aligned_cols=146 Identities=26% Similarity=0.315 Sum_probs=114.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++| .++|++|+..+++. ||+|++
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g---------~i~yv~q~~~l~~~-tv~enl 118 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG---------RISFSSQFSWIMPG-TIKENI 118 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---------EEEEEeCccccccc-CHHHHh
Confidence 379999999999999999999999999999999999874 679999987 38999999887764 999998
Q ss_pred HHHHH------------cCC----------------------c---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIAL------------FRL----------------------P---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~~------------~~~----------------------~---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.+... .++ + +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 119 ~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l 198 (282)
T cd03291 119 IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198 (282)
T ss_pred hcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence 75310 111 0 1899999999999999999999999999999876
Q ss_pred H--H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 124 L--L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 124 ~--l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
. + +.+|.++..-+ |+.... ..+|+++.+.+|++..
T Consensus 199 ~~~ll~~~~~~~tIiiis------------H~~~~~-~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 199 FESCVCKLMANKTRILVT------------SKMEHL-KKADKILILHEGSSYF 238 (282)
T ss_pred HHHHHHHhhCCCEEEEEe------------CChHHH-HhCCEEEEEECCEEEE
Confidence 3 2 23455554422 222222 2478888888887643
No 287
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.92 E-value=1.7e-25 Score=238.09 Aligned_cols=157 Identities=24% Similarity=0.363 Sum_probs=124.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+|+|+|.+++ .+|+|.+||.+.++ ..++.++|++|++.+|+ .|++
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~ 431 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-ASVM 431 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-ccHH
Confidence 79999999999999999999999999999999999974 67999999987643 45678999999988774 5999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||+++||+++.+|++++||||||+||..+
T Consensus 432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 99987310 0 111 189999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
++.+. + +.+|+++..= .|..+. ...+|.++.+.+|+....++
T Consensus 512 ~~~i~~~l~~~~~~~t~Iii------------tH~~~~-~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 512 EQLVQQALETLMKGRTTLII------------AHRLAT-VLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHHHHHHHHhCCCEEEEE------------ecchHH-HHhCCEEEEEECCEEEeeec
Confidence 98873 2 2256666552 233322 23478888888887665444
No 288
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=2.9e-25 Score=236.91 Aligned_cols=158 Identities=21% Similarity=0.265 Sum_probs=125.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||.++|+||||||||||+++|+|.++ +.+|+|.+||.+..+ ..++.++||+|+..+++ .|++
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~ 426 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIR 426 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHH
Confidence 7899999999999999999999999999999999987 477999999987642 45678999999988875 6999
Q ss_pred HHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... .++| +||++|||+|+.+|++++|||||+|||+.+
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 99987410 0111 189999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
+..+. -+.+|+++-.-+ |+.... ..+|.++.+.+|+....++.
T Consensus 507 ~~~i~~~l~~~~~~~tvI~is------------H~~~~~-~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 507 EARVKNAIDALRKNRTTFIIA------------HRLSTV-RNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHhCCCEEEEEE------------cChHHH-HcCCEEEEEECCEEEEECCH
Confidence 99884 223566655532 333222 23888898888877654443
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=2.3e-25 Score=209.85 Aligned_cols=147 Identities=31% Similarity=0.459 Sum_probs=110.9
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC--CCCCHHHHHHHHHH
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY--LHLTVTETLVFIAL 85 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~f~~~ 85 (413)
+++++||+++|+|+||||||||+++|+|.++ +.+|+|.+||++..+ .++.++|++|++.++ ..+|++|++.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4689999999999999999999999999987 467999999987543 356799999997653 34799999865311
Q ss_pred -----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 86 -----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 86 -----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+++. +||+.||++|+.+|+++++||||+|||+.++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0110 18999999999999999999999999999999883
Q ss_pred -HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 -LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 -ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+..+|.++..-+ |+.+...+.+|+++.+ +|+..
T Consensus 158 ~~~~~~~tvii~s------------H~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 158 ELAGAGTAILMTT------------HDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred HHHHcCCEEEEEe------------CCHHHHHHhCCEEEEE-CCEEE
Confidence 223576665532 3333333446666655 56544
No 290
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.9e-25 Score=231.39 Aligned_cols=157 Identities=25% Similarity=0.372 Sum_probs=123.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ +.+|+|.++|++... ..++.++|++|+. .+++.
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 78999999999999999999999999999999999862 257999999976531 2345699999985 47788
Q ss_pred CCHHHHHHHHHH------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 74 LTVTETLVFIAL------------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 74 lTv~e~l~f~~~------------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+||.|++.+... +++. +||+.||++|+.+|++++|||||+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~ 435 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 999999975310 0111 1899999999999999999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+.++..+. +..+|.+|..- .|+.....+.||+++.+.+|+...
T Consensus 436 LD~~~~~~l~~~l~~l~~~g~tvi~~------------sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 436 IDVGAKYEIYKLINQLVQQGVAIIVI------------SSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred cCHhHHHHHHHHHHHHHHCCCEEEEE------------CCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999883 33467766653 345444556788888888887643
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=7.7e-25 Score=231.07 Aligned_cols=156 Identities=26% Similarity=0.331 Sum_probs=117.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh-------hc-cccEEEEecCCc-
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR-------TV-KRKTGFVAHSNV- 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-------~~-~~~~~~v~q~~~- 69 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++. +.+|+|.++|.+... .. ++.++|++|+..
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~ 103 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV 103 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchh
Confidence 799999999999999999999999999999999998742 268999999987532 11 246999999864
Q ss_pred -cCCCCCHHHHHHHHHH--------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308 70 -FYLHLTVTETLVFIAL--------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 70 -~~~~lTv~e~l~f~~~--------------------~~~~-----------------~krvsia~~l~~~p~llllDEP 111 (413)
+.+.+|++|++.+... ++++ +||+.||++|+.+|++|+||||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEP 183 (529)
T PRK15134 104 SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183 (529)
T ss_pred hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5677899998764211 1121 1899999999999999999999
Q ss_pred CCCCCHHHHHHHH--H---hcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 112 ASGLDSTIAKQIL--L---NSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 112 tsgLD~~~~~~i~--l---l~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
|+|||+.++..+. + ..+ |.++..- .|+.....+.||+++.+.+|..
T Consensus 184 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~v------------tHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 184 TTALDVSVQAQILQLLRELQQELNMGLLFI------------THNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCeEEEE------------cCcHHHHHHhcCEEEEEECCEE
Confidence 9999999998883 1 122 6555442 2333333445666666666654
No 292
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.1e-25 Score=212.22 Aligned_cols=122 Identities=29% Similarity=0.458 Sum_probs=100.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC-C-C-CeeEEEEECCccc---Ch-----hccccEEEEecCC--
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS-T-G-ETRGNIDYNNNPL---SR-----TVKRKTGFVAHSN-- 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~~~---~~-----~~~~~~~~v~q~~-- 68 (413)
+++|||+++++||+++|+|+|||||||+.++|.|+++ + + ..+|+|.++|+++ ++ ...+.+++++|++
T Consensus 20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~ 99 (316)
T COG0444 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMT 99 (316)
T ss_pred EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchh
Confidence 7899999999999999999999999999999999987 3 3 3668999999864 22 1234799999996
Q ss_pred ccCCCCCHHHHHHHHHHc---------------------CCc-----------------hhHHHHHHHHhhCCCEEEEeC
Q 048308 69 VFYLHLTVTETLVFIALF---------------------RLP-----------------IKRVSRAQELLINPSLLFLDE 110 (413)
Q Consensus 69 ~~~~~lTv~e~l~f~~~~---------------------~~~-----------------~krvsia~~l~~~p~llllDE 110 (413)
.+.|.+||.+.+.=.... ++| +|||.||.+|+.+|++||.||
T Consensus 100 sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADE 179 (316)
T COG0444 100 SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE 179 (316)
T ss_pred hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCC
Confidence 677888887665322211 111 189999999999999999999
Q ss_pred CCCCCCHHHHHHH
Q 048308 111 PASGLDSTIAKQI 123 (413)
Q Consensus 111 PtsgLD~~~~~~i 123 (413)
||++||...+.+|
T Consensus 180 PTTALDvt~QaqI 192 (316)
T COG0444 180 PTTALDVTVQAQI 192 (316)
T ss_pred CcchhhHHHHHHH
Confidence 9999999999998
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=1.2e-25 Score=204.82 Aligned_cols=112 Identities=36% Similarity=0.530 Sum_probs=90.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++| ..
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------~l 82 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ---------AL 82 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------HH
Confidence 7899999999999999999999999999999999987 467999999987632 23456899998 12
Q ss_pred HHHHHHHHcC-----C---chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 78 ETLVFIALFR-----L---PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 78 e~l~f~~~~~-----~---~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.+.+....+ + .+||++||++|+.+|++++|||||+|||..++..+.
T Consensus 83 ~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 83 ELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred HHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2111111111 1 238999999999999999999999999999998883
No 294
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=8.4e-25 Score=229.34 Aligned_cols=156 Identities=27% Similarity=0.431 Sum_probs=123.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+... ..++.++|++|+. .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 68999999999999999999999999999999999874 67999999976532 2345699999995 57889
Q ss_pred CCHHHHHHHHHH-------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 74 LTVTETLVFIAL-------------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 74 lTv~e~l~f~~~-------------------------~~~~---------------~krvsia~~l~~~p~llllDEPts 113 (413)
+||+|++.+... ++++ +||+.||++|+.+|++++|||||+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 999999975210 1121 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|||..++..+. +..+|.++-.- .|+.....+.||+++.+.+|+...
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~g~tviiv------------tHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAEGLSIILV------------SSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHCCCEEEEE------------cCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999998883 33457666553 344444456688888888887643
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=2.9e-25 Score=232.71 Aligned_cols=156 Identities=26% Similarity=0.400 Sum_probs=123.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|++... ..++.++|++|+. .+++.
T Consensus 275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 353 (500)
T TIGR02633 275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353 (500)
T ss_pred ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence 78999999999999999999999999999999999863 257999999987532 2345799999995 57889
Q ss_pred CCHHHHHHHHHH--c----------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 74 LTVTETLVFIAL--F----------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 74 lTv~e~l~f~~~--~----------------------~~~---------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+||+|++.+... . ++. +||+.||++|+.+|++++|||||+|
T Consensus 354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 433 (500)
T TIGR02633 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433 (500)
T ss_pred CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 999999876310 0 110 1899999999999999999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
||..++..+. +..+|.++.. ..|+.....+.||+++.+.+|...
T Consensus 434 LD~~~~~~l~~~l~~l~~~g~tvii------------vsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 434 VDVGAKYEIYKLINQLAQEGVAIIV------------VSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred cCHhHHHHHHHHHHHHHhCCCEEEE------------ECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999874 3345766655 235555555668888877777654
No 296
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.3e-25 Score=230.81 Aligned_cols=156 Identities=17% Similarity=0.303 Sum_probs=124.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++... ..++.++|++|+. .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 6899999999999999999999999999999999987 467999999986531 2345799999985 48889
Q ss_pred CCHHHHHHHHHH-------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 74 LTVTETLVFIAL-------------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 74 lTv~e~l~f~~~-------------------------~~~~---------------~krvsia~~l~~~p~llllDEPts 113 (413)
+|+.|++.+... +++. +||+.||++|+.+|++|+|||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 999999864210 1120 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|||..++.++. +..+|.+|-.- .|+.....+.||+++.+.+|+...
T Consensus 426 ~LD~~~~~~l~~~l~~l~~~g~tviiv------------sHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAAQGVAVLFV------------SSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CCCHhHHHHHHHHHHHHHhCCCEEEEE------------CCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999984 33457666552 345445556788888888876543
No 297
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-25 Score=227.11 Aligned_cols=131 Identities=31% Similarity=0.471 Sum_probs=108.7
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|+++++||-+||+|+||||||||++.|+|-++ +.+|+|..||.+... ..++.++++.|...+|. -|+
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tl 428 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTL 428 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHH
Confidence 48999999999999999999999999999999999987 477999999988642 35667899999877774 599
Q ss_pred HHHHHHHHH-------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL-------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~-------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
|+||+.+.. .+ .| +||+.|||+|++|.++++|||||.|||+.
T Consensus 429 r~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~ 508 (573)
T COG4987 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 (573)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence 999987531 11 11 28999999999999999999999999999
Q ss_pred HHHHHH--Hh--cCCcEEEe
Q 048308 119 IAKQIL--LN--SEGNSLHV 134 (413)
Q Consensus 119 ~~~~i~--ll--~~G~~v~~ 134 (413)
|..+++ +. .+|+++-.
T Consensus 509 TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 509 TERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred hHHHHHHHHHHHhcCCeEEE
Confidence 999994 11 24665554
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=1.4e-24 Score=228.67 Aligned_cols=157 Identities=30% Similarity=0.357 Sum_probs=116.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC-----------------------ccc-----
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN-----------------------NPL----- 53 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-----------------------~~~----- 53 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+..+.+|+|.++| .+.
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 94 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV 94 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence 7899999999999999999999999999999999862114679999872 111
Q ss_pred -----C----hhccccEEEEecC-CccCCCCCHHHHHHHHHHc-CCc--------------------------------h
Q 048308 54 -----S----RTVKRKTGFVAHS-NVFYLHLTVTETLVFIALF-RLP--------------------------------I 90 (413)
Q Consensus 54 -----~----~~~~~~~~~v~q~-~~~~~~lTv~e~l~f~~~~-~~~--------------------------------~ 90 (413)
. ...++.++|++|+ +.+++.+||+|++.+.... +.+ +
T Consensus 95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 174 (520)
T TIGR03269 95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174 (520)
T ss_pred hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence 0 1124569999997 6788889999999875321 110 1
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308 91 KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL 164 (413)
Q Consensus 91 krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 164 (413)
||+.||++|+.+|++|+|||||+|||+.++..++ +.+ .|.+|..- .|+.....+.+|+++.+
T Consensus 175 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv------------tHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT------------SHWPEVIEDLSDKAIWL 242 (520)
T ss_pred HHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE------------eCCHHHHHHhcCEEEEE
Confidence 8999999999999999999999999999999972 223 36655442 23333334556666666
Q ss_pred hCCccC
Q 048308 165 ANGVVS 170 (413)
Q Consensus 165 ~~~~~~ 170 (413)
.+|...
T Consensus 243 ~~G~i~ 248 (520)
T TIGR03269 243 ENGEIK 248 (520)
T ss_pred eCCEEe
Confidence 666543
No 299
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=5e-25 Score=231.48 Aligned_cols=156 Identities=23% Similarity=0.356 Sum_probs=122.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+... ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 58999999999999999999999999999999999864 67999999986532 1245699999974 47888
Q ss_pred CCHHHHHHHH----------------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 74 LTVTETLVFI----------------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 74 lTv~e~l~f~----------------------~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
+|+.|++... ..++++ +||+.||++|+.+|++|+|||||+|||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 9999987421 011221 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 117 STIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 117 ~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+.++..+. +..+|.++.. ..|+.....+.||+++.+.+|+...
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tiIi------------vsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 436 VSARNDIYQLIRSIAAQNVAVLF------------ISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEE------------ECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999884 2235766555 2355555556788888888776653
No 300
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.92 E-value=6.1e-25 Score=231.76 Aligned_cols=130 Identities=29% Similarity=0.484 Sum_probs=109.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.+++ .+|+|.+||.+..+ ..++.++||+|++.+|+ .|++
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~ 413 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIA 413 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHH
Confidence 79999999999999999999999999999999999974 67999999997642 46778999999998885 5999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++||||||+||+.+
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 99987421 0 111 189999999999999999999999999999
Q ss_pred HHHHH--Hh--cCCcEEEe
Q 048308 120 AKQIL--LN--SEGNSLHV 134 (413)
Q Consensus 120 ~~~i~--ll--~~G~~v~~ 134 (413)
+.++. +. .+|+++..
T Consensus 494 ~~~i~~~l~~~~~~~t~i~ 512 (529)
T TIGR02857 494 EALVTEALRALAQGRTVLL 512 (529)
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 99884 22 25665544
No 301
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=223.41 Aligned_cols=157 Identities=29% Similarity=0.423 Sum_probs=118.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCC--ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSN--VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~--~~~~~ 73 (413)
+++|||+.+++||+++|+|+||||||||.|+|+|+.++ ..|.|.++|.+.+ ...++.+.+|+|++ .+.|.
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 68999999999999999999999999999999999984 7799999997621 12345677777775 67899
Q ss_pred CCHHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 74 LTVTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 74 lTv~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||++.+.-.... +++ +||++|||+|+.+|+++++|||||.||+.
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 9999998654321 111 28999999999999999999999999999
Q ss_pred HHHHHH-Hh----c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 119 IAKQIL-LN----S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 119 ~~~~i~-ll----~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
.+.+|+ +| . -|-+.-+ +.|+.......||.+..+..|+....
T Consensus 464 vqa~VlnLl~~lq~e~g~t~lf------------ISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 464 VQAQVLNLLKDLQEELGLTYLF------------ISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHHHHHHHHHHHhCCEEEE------------EeCCHHHHHhhCceEEEEECCeEEEe
Confidence 999983 11 1 1333222 33454455555666666666555443
No 302
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=4.7e-25 Score=255.89 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=104.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.+||+|+||||||||+++|.|.+++ .+|+|.+||.++.+ ..|+++++|+|++.+|+. |+|
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr 1327 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVR 1327 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHH
Confidence 79999999999999999999999999999999999974 67999999998753 567889999999999865 999
Q ss_pred HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|||.+... . ++| +||++|||+|+.+|++|+||||||+||+.+.
T Consensus 1328 ~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te 1407 (1495)
T PLN03232 1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407 (1495)
T ss_pred HHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 99975310 0 111 2899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
..|
T Consensus 1408 ~~I 1410 (1495)
T PLN03232 1408 SLI 1410 (1495)
T ss_pred HHH
Confidence 888
No 303
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=6.2e-25 Score=255.54 Aligned_cols=159 Identities=23% Similarity=0.337 Sum_probs=129.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.+||+|+||||||||+++|.|.+++ .+|+|.+||.++.+ ..|+.+++|+|++.+|.. |+|
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIr 1330 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVR 1330 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHH
Confidence 79999999999999999999999999999999999974 67999999998753 567889999999999865 999
Q ss_pred HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|||.+... . ++| +||++|||||+.+|++|+||||||+||+.+.
T Consensus 1331 eNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te 1410 (1622)
T PLN03130 1331 FNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410 (1622)
T ss_pred HHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 99976310 0 111 2899999999999999999999999999999
Q ss_pred HHH-----------------------------HHhcCCcEEEecCcchHhH----HHHhcCCCCCCCCChhHHHHHhh
Q 048308 121 KQI-----------------------------LLNSEGNSLHVGKGDGVMS----YFVGIGFEPSAAMNPSDFLLDLA 165 (413)
Q Consensus 121 ~~i-----------------------------~ll~~G~~v~~G~~~~~~~----~f~~~g~~~p~~~n~ad~~~~~~ 165 (413)
..| ++|++|+++.+|++++... .|.++ +. ......++++..+.
T Consensus 1411 ~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L-~~-~~~~~~~~~l~~~a 1486 (1622)
T PLN03130 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM-VQ-STGAANAQYLRSLV 1486 (1622)
T ss_pred HHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHH-HH-HcChhhhHHHHHHH
Confidence 877 5789999999999988753 23322 00 01122356777776
No 304
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=2.1e-24 Score=206.31 Aligned_cols=142 Identities=23% Similarity=0.269 Sum_probs=109.2
Q ss_pred ccccceeEEe-----cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSS-----LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~-----~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv 76 (413)
.++|+++.++ +||+++|+||||||||||+++|+|.++ +.+|+|.++|. .++|++|+....+.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCCH
Confidence 4667777775 799999999999999999999999987 46799999874 58999999877778999
Q ss_pred HHHHHHHHH---------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308 77 TETLVFIAL---------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--- 124 (413)
Q Consensus 77 ~e~l~f~~~---------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--- 124 (413)
+|++.+... ++++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999865321 1111 18999999999999999999999999999999883
Q ss_pred --Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308 125 --LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA 165 (413)
Q Consensus 125 --ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~ 165 (413)
+.. +|+++..-+ |+.......||+++.+.
T Consensus 159 ~~~~~~~~~tiiivs------------Hd~~~~~~~~d~i~~l~ 190 (246)
T cd03237 159 RRFAENNEKTAFVVE------------HDIIMIDYLADRLIVFE 190 (246)
T ss_pred HHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEc
Confidence 222 366665533 33333334566666553
No 305
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=190.52 Aligned_cols=121 Identities=34% Similarity=0.522 Sum_probs=100.7
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------h---hccccEEEEecCCcc
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------R---TVKRKTGFVAHSNVF 70 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~---~~~~~~~~v~q~~~~ 70 (413)
+.|.||++..++||.+.++||||+|||||+++|.=+.- +.+|+..+-|...+ + ..|+.+|.|+|+-.+
T Consensus 16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l 93 (242)
T COG4161 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93 (242)
T ss_pred hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence 36889999999999999999999999999999975544 46788888765432 1 356789999999999
Q ss_pred CCCCCHHHHHHHHH--------------------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 71 YLHLTVTETLVFIA--------------------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 71 ~~~lTv~e~l~f~~--------------------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.|++||.|||.-+- .+|+. .+||+|||+|+.+|++|++||||+.||
T Consensus 94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaald 173 (242)
T COG4161 94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccC
Confidence 99999999985331 11211 289999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
++...++
T Consensus 174 peitaqv 180 (242)
T COG4161 174 PEITAQI 180 (242)
T ss_pred HHHHHHH
Confidence 9988887
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=1.6e-24 Score=226.61 Aligned_cols=156 Identities=23% Similarity=0.256 Sum_probs=117.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCcc--C----
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVF--Y---- 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~--~---- 71 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++|++|+... +
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 95 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGE 95 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccch
Confidence 7899999999999999999999999999999999987 467999998875421 233468999997542 1
Q ss_pred --CCCCHHHHHHHH-----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 72 --LHLTVTETLVFI-----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 72 --~~lTv~e~l~f~-----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
..+||+|++.+. ..++++ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 175 (490)
T PRK10938 96 DDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA 175 (490)
T ss_pred hhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 157899876421 122221 28999999999999999999999999999998883
Q ss_pred -----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 125 -----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 125 -----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+-++|.++..- .|+.....+.||+++.+.+|....
T Consensus 176 ~~l~~~~~~g~tvii~------------tH~~~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 176 ELLASLHQSGITLVLV------------LNRFDEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred HHHHHHHhcCCeEEEE------------eCCHHHHHhhCCEEEEEECCEEEE
Confidence 22346555442 244444456677777777776543
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5e-24 Score=224.92 Aligned_cols=147 Identities=27% Similarity=0.432 Sum_probs=117.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|. +.++|++|+..+++.+||+|++.
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~e~l~ 86 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN-------ERLGKLRQDQFAFEEFTVLDTVI 86 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC-------CEEEEEeccCCcCCCCcHHHHHH
Confidence 78999999999999999999999999999999999874 6799999873 35899999998899999999986
Q ss_pred HHH---------------------------------------------------HcCCc---------------hhHHHH
Q 048308 82 FIA---------------------------------------------------LFRLP---------------IKRVSR 95 (413)
Q Consensus 82 f~~---------------------------------------------------~~~~~---------------~krvsi 95 (413)
+.. .++++ +||+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~l 166 (530)
T PRK15064 87 MGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLL 166 (530)
T ss_pred HhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHH
Confidence 521 00111 189999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 96 AQELLINPSLLFLDEPASGLDSTIAKQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 96 a~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
|++|+.+|++++|||||+|||+.++..+. +...|.+|.. +.|+.....+.||+++.+.+|..
T Consensus 167 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiii------------vsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 167 AQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMII------------ISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred HHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEE------------EeCCHHHHHhhcceEEEEeCCEE
Confidence 99999999999999999999999999884 3334655544 23444334456777777777764
No 308
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.91 E-value=6.6e-25 Score=193.14 Aligned_cols=96 Identities=31% Similarity=0.501 Sum_probs=85.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|. +.++|++| ++
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~~-------lS------ 72 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------VKIGYFEQ-------LS------ 72 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------EEEEEEcc-------CC------
Confidence 6899999999999999999999999999999999987 46899999984 46899998 11
Q ss_pred HHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 82 FIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 82 f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
....||++||++|+.+|+++++||||+|||..++..+.
T Consensus 73 -----~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~ 110 (144)
T cd03221 73 -----GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110 (144)
T ss_pred -----HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 11249999999999999999999999999999999884
No 309
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=7.6e-25 Score=194.54 Aligned_cols=159 Identities=26% Similarity=0.448 Sum_probs=125.4
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------------h----hccccEEE
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------------R----TVKRKTGF 63 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~----~~~~~~~~ 63 (413)
++||+||++.+.|+++.|+|.|||||||+|+||.=+.+ +..|.|.+||..+. + ..+...++
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 47999999999999999999999999999999987765 47799999997531 1 12346899
Q ss_pred EecCCccCCCCCHHHHHHHH--------------------HHcCC--------------chhHHHHHHHHhhCCCEEEEe
Q 048308 64 VAHSNVFYLHLTVTETLVFI--------------------ALFRL--------------PIKRVSRAQELLINPSLLFLD 109 (413)
Q Consensus 64 v~q~~~~~~~lTv~e~l~f~--------------------~~~~~--------------~~krvsia~~l~~~p~llllD 109 (413)
|+|+..+..++||.||..=+ ++.++ ..||++|||+|+.+|+++++|
T Consensus 98 VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 98 VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec
Confidence 99999999999999998532 11111 128999999999999999999
Q ss_pred CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
||||.||+...-+++ +-.+|++.-.- .|++.-..+.+.+++-+-+|.+...+
T Consensus 178 EPTSALDPElVgEVLkv~~~LAeEgrTMv~V------------THEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 178 EPTSALDPELVGEVLKVMQDLAEEGRTMVVV------------THEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCeEEEE------------eeehhHHHhhhhheEEeecceecccC
Confidence 999999999887774 55689987663 34444456677788877777654433
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=4.5e-24 Score=226.50 Aligned_cols=146 Identities=27% Similarity=0.335 Sum_probs=115.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.+++. ..++||+|+..+++.+||+|++.
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e~l~ 92 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-------IKVGYLPQEPQLDPEKTVRENVE 92 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC-------CEEEEEecCCCCCCCCcHHHHHH
Confidence 78999999999999999999999999999999999874 6799998752 45999999999999999999997
Q ss_pred HHHH-------------------------------------------------------cCCc-------------hhHH
Q 048308 82 FIAL-------------------------------------------------------FRLP-------------IKRV 93 (413)
Q Consensus 82 f~~~-------------------------------------------------------~~~~-------------~krv 93 (413)
+... ++++ +||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv 172 (556)
T PRK11819 93 EGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRV 172 (556)
T ss_pred HhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHH
Confidence 6310 0010 1899
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc--CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 94 SRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS--EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 94 sia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~--~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
.||++|+.+|++++|||||+|||+.++..+. ++. +|.++.. .|+.....+.+|.++.+.+|..
T Consensus 173 ~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviii-------------sHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 173 ALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAV-------------THDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred HHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEE-------------eCCHHHHHhhcCeEEEEeCCEE
Confidence 9999999999999999999999999999883 222 2333333 3444444556777777777764
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=1.4e-24 Score=250.54 Aligned_cols=152 Identities=23% Similarity=0.327 Sum_probs=121.6
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC----------------------------------------
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---------------------------------------- 40 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---------------------------------------- 40 (413)
++|+|+|++++|||.+||+||||||||||+++|.|.+++.
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 3799999999999999999999999999999999998851
Q ss_pred ------------CeeEEEEECCcccC----hhccccEEEEecCCccCCCCCHHHHHHHHHH-------------------
Q 048308 41 ------------ETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTVTETLVFIAL------------------- 85 (413)
Q Consensus 41 ------------~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~------------------- 85 (413)
+.+|+|.+||.++. +..++.++||+|++.+| +.|++||+.+...
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 15899999999874 25678899999999988 5799999988521
Q ss_pred -cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh----cCCcEEEecCcchH
Q 048308 86 -FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN----SEGNSLHVGKGDGV 140 (413)
Q Consensus 86 -~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll----~~G~~v~~G~~~~~ 140 (413)
.++| +||++|||||+.+|++|+||||||+||+.+...|. +. .+|+++..=+
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa---- 1416 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA---- 1416 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe----
Confidence 0122 28999999999999999999999999999998884 22 2466655422
Q ss_pred hHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308 141 MSYFVGIGFEPSAAMNPSDFLLDLAN 166 (413)
Q Consensus 141 ~~~f~~~g~~~p~~~n~ad~~~~~~~ 166 (413)
|.... ..-||.++.+.+
T Consensus 1417 --------HRlst-i~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1417 --------HRIAS-IKRSDKIVVFNN 1433 (1466)
T ss_pred --------chHHH-HHhCCEEEEEeC
Confidence 22211 234788888887
No 312
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=5.9e-24 Score=218.95 Aligned_cols=141 Identities=28% Similarity=0.421 Sum_probs=115.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccC---h-----hccccEEEEecCC--c
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLS---R-----TVKRKTGFVAHSN--V 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~--~ 69 (413)
+++||||++.|||+++|+|.|||||||+.++|.|.++.+ ..+|+|.++|.++. + ...+.+++++|++ .
T Consensus 24 ~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~s 103 (539)
T COG1123 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTS 103 (539)
T ss_pred eeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhh
Confidence 789999999999999999999999999999999998754 35799999998542 1 2345799999996 4
Q ss_pred cCCCCCHHHHHHHHHHc--------------------CCc----------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 70 FYLHLTVTETLVFIALF--------------------RLP----------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 70 ~~~~lTv~e~l~f~~~~--------------------~~~----------------~krvsia~~l~~~p~llllDEPts 113 (413)
+.|-+|+.+-+.=+... ++| +||+.||++|+.+|++|++||||+
T Consensus 104 lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTT 183 (539)
T COG1123 104 LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183 (539)
T ss_pred cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 56778887766432211 111 189999999999999999999999
Q ss_pred CCCHHHHHHH--------------------------------HHhcCCcEEEecCcchHhH
Q 048308 114 GLDSTIAKQI--------------------------------LLNSEGNSLHVGKGDGVMS 142 (413)
Q Consensus 114 gLD~~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~ 142 (413)
+||+.++.+| ++|.+|++|..|+++++..
T Consensus 184 aLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 9999999998 4778888888888777643
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=6.8e-24 Score=224.96 Aligned_cols=146 Identities=27% Similarity=0.327 Sum_probs=114.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.+++. ..++||+|+..+++++||+|++.
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e~i~ 90 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPG-------IKVGYLPQEPQLDPTKTVRENVE 90 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC-------CEEEEEeccCCCCCCCcHHHHHH
Confidence 79999999999999999999999999999999999874 6799998752 46999999999999999999997
Q ss_pred HHHH-------------------------------------------------------cCCc-------------hhHH
Q 048308 82 FIAL-------------------------------------------------------FRLP-------------IKRV 93 (413)
Q Consensus 82 f~~~-------------------------------------------------------~~~~-------------~krv 93 (413)
+... ++++ +||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv 170 (552)
T TIGR03719 91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRV 170 (552)
T ss_pred HhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHH
Confidence 6310 0010 1899
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh-c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 94 SRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN-S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 94 sia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll-~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
.||++|+.+|++++|||||++||+.++..+. ++ + ++.++.. .|+.....+.+|.++.+.+|..
T Consensus 171 ~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIii-------------sHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 171 ALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAV-------------THDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEE-------------eCCHHHHHhhcCeEEEEECCEE
Confidence 9999999999999999999999999999884 23 2 2333332 2333333455777777777653
No 314
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.90 E-value=9e-24 Score=227.72 Aligned_cols=120 Identities=31% Similarity=0.455 Sum_probs=104.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|++++|||+++|+||||||||||+|+|+|+++ +.+|+|.+||++... . .++.++|++|+..+++.
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 7999999999999999999999999999999999987 467999999987642 1 14579999999999999
Q ss_pred CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+|+.||+.+.... ++. +||+.||++|+.+|++++|||||+|||..++
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 9999999764321 110 1899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
+.+
T Consensus 181 ~~l 183 (648)
T PRK10535 181 EEV 183 (648)
T ss_pred HHH
Confidence 988
No 315
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.90 E-value=5.3e-24 Score=211.57 Aligned_cols=104 Identities=37% Similarity=0.581 Sum_probs=89.8
Q ss_pred EECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHHHHHHcC-Cc-----
Q 048308 18 ILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLVFIALFR-LP----- 89 (413)
Q Consensus 18 ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~-~~----- 89 (413)
|+||||||||||+|+|+|+.+ +.+|+|.++|++... ..++.++|++|+..+++++||+||+.|....+ .+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999987 467999999987643 33567999999999999999999998864321 10
Q ss_pred ---------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 90 ---------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 90 ---------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||++||++|+.+|++++|||||+|||+.++..+
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l 139 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM 139 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH
Confidence 1899999999999999999999999999999887
No 316
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=2.3e-24 Score=186.86 Aligned_cols=109 Identities=37% Similarity=0.571 Sum_probs=92.8
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999987 478999999988753 35668999999999999999999
Q ss_pred HHHH------HHHcCC------------------chhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 79 TLVF------IALFRL------------------PIKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 79 ~l~f------~~~~~~------------------~~krvsia~~l~~~p~llllDEPts 113 (413)
+..- ...+++ .+||+.||++|+.+|++++|||||+
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 NESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8311 111111 1289999999999999999999996
No 317
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=217.83 Aligned_cols=111 Identities=29% Similarity=0.396 Sum_probs=92.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.+. ++.+...+.+.+|++|++.
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL~ 107 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA---------LIAISSGLNGQLTGIENIE 107 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee---------eEEeccccCCCCcHHHHHH
Confidence 7999999999999999999999999999999999987 4679999998641 1223345567789999987
Q ss_pred HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.... ++. +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus 108 l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 108 LKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 63211 111 1899999999999999999999999999999877
No 318
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2e-24 Score=237.17 Aligned_cols=139 Identities=25% Similarity=0.450 Sum_probs=118.9
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+||+|+|+++++|+.+||+|||||||||.+-+|-+.++ +..|.|.++|.++++ ..|++++.|.|++.+|. -|+
T Consensus 1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TI 1080 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTI 1080 (1228)
T ss_pred hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccH
Confidence 48999999999999999999999999999999999987 478999999998753 56889999999999985 599
Q ss_pred HHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||+.|...- .+| +||++||||++.||++|+|||.||+||++
T Consensus 1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDse 1160 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE 1160 (1228)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhh
Confidence 9999987111 112 28999999999999999999999999999
Q ss_pred HHHHH-----------------------------HHhcCCcEEEecCcchHhH
Q 048308 119 IAKQI-----------------------------LLNSEGNSLHVGKGDGVMS 142 (413)
Q Consensus 119 ~~~~i-----------------------------~ll~~G~~v~~G~~~~~~~ 142 (413)
+..-| .++++|+++..|+.++...
T Consensus 1161 SErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1161 SERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 98776 4677777777777666643
No 319
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2.2e-24 Score=186.56 Aligned_cols=122 Identities=32% Similarity=0.526 Sum_probs=107.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccC--hhccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLS--RTVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~--~~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|-|+|++|.+||++.||||||||||||+..+.|.+.+. ..+|++++|++.++ +..+|++|..+||+.+||+++|.+
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~ 96 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQ 96 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccccc
Confidence 577999999999999999999999999999999988754 68899999999876 456889999999999999999999
Q ss_pred HHHHHHHcCC-------------------------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFRL-------------------------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~~-------------------------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
||.|+.--.+ | +-||++-|+|+..|+.++||||+|.||..-+.+.
T Consensus 97 Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qf 173 (213)
T COG4136 97 NLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173 (213)
T ss_pred ceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHH
Confidence 9988631100 1 1489999999999999999999999999988877
No 320
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=2.7e-24 Score=250.01 Aligned_cols=157 Identities=22% Similarity=0.261 Sum_probs=121.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|||++++|||.+||+|+||||||||+++|.|.++ +.+|+|.+||.++.+ ..|+.+++|+|++.+|+. |+|
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr 1377 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLR 1377 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHH
Confidence 7999999999999999999999999999999999987 467999999998753 567889999999999975 999
Q ss_pred HHHHH-H----------H-Hc-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVF-I----------A-LF-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f-~----------~-~~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|||.. . + .. ++| +||++|||+|+.+|++|+||||||+||+.+.
T Consensus 1378 ~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te 1457 (1522)
T TIGR00957 1378 MNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457 (1522)
T ss_pred HHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 99973 1 0 01 111 2899999999999999999999999999999
Q ss_pred HHHH--Hh--cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 121 KQIL--LN--SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 121 ~~i~--ll--~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
..|. +. .+|+++.. +-|.... ...+|.++.+.+|++.+.++
T Consensus 1458 ~~Iq~~l~~~~~~~TvI~------------IAHRl~t-i~~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1458 NLIQSTIRTQFEDCTVLT------------IAHRLNT-IMDYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHHHHHHHHHcCCCEEEE------------EecCHHH-HHhCCEEEEEECCEEEEECC
Confidence 8873 21 23555443 1222222 22367777777776655444
No 321
>PTZ00243 ABC transporter; Provisional
Probab=99.90 E-value=4e-24 Score=248.34 Aligned_cols=119 Identities=23% Similarity=0.369 Sum_probs=103.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|||++++|||.+||+|+||||||||+++|.|.++ +.+|+|.+||.++.+ ..++.+++|+|++.+|+. |+|
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIr 1401 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVR 1401 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHH
Confidence 7999999999999999999999999999999999997 467999999998753 567889999999999865 999
Q ss_pred HHHHHHH------------HcC-------Cc------------------hhHHHHHHHHhhC-CCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIA------------LFR-------LP------------------IKRVSRAQELLIN-PSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~------------~~~-------~~------------------~krvsia~~l~~~-p~llllDEPtsgLD~~~ 119 (413)
|||.... ..+ +| +||++|||+|+.+ |++|+||||||+||+.+
T Consensus 1402 eNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243 1402 QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred HHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence 9997521 001 11 2899999999995 89999999999999999
Q ss_pred HHHH
Q 048308 120 AKQI 123 (413)
Q Consensus 120 ~~~i 123 (413)
...|
T Consensus 1482 e~~I 1485 (1560)
T PTZ00243 1482 DRQI 1485 (1560)
T ss_pred HHHH
Confidence 9888
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=221.31 Aligned_cols=147 Identities=23% Similarity=0.369 Sum_probs=112.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCc--cCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNV--FYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~--~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|. +.++|++|+.. +++.+||+|+
T Consensus 334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~ 404 (530)
T PRK15064 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-------ANIGYYAQDHAYDFENDLTLFDW 404 (530)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEcccccccCCCCCcHHHH
Confidence 7899999999999999999999999999999999987 46799999873 46999999863 5567999999
Q ss_pred HHHHH--------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--HhcC
Q 048308 80 LVFIA--------------LFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNSE 128 (413)
Q Consensus 80 l~f~~--------------~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~~ 128 (413)
+.+.. .++++ +||+.||++|+.+|++++|||||+|||+.++..+. +..-
T Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 405 MSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred HHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence 86421 11221 18999999999999999999999999999998884 2222
Q ss_pred CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 129 GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 129 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+.++.. +.|+.....+.||+++.+.+|..
T Consensus 485 ~~tvi~------------vsHd~~~~~~~~d~i~~l~~g~i 513 (530)
T PRK15064 485 EGTLIF------------VSHDREFVSSLATRIIEITPDGV 513 (530)
T ss_pred CCEEEE------------EeCCHHHHHHhCCEEEEEECCeE
Confidence 223333 22343334455677777766654
No 323
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.8e-24 Score=200.01 Aligned_cols=121 Identities=32% Similarity=0.482 Sum_probs=96.8
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecC--CccCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHS--NVFYLH 73 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~--~~~~~~ 73 (413)
+||+|+|++|+|||-.+|+|||||||||||++++|..++ .+|.+.+.|++.. ...|+.+|+|.-. ..+.++
T Consensus 45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~ 122 (257)
T COG1119 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVR 122 (257)
T ss_pred eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccc
Confidence 489999999999999999999999999999999999875 4799999888753 3467889998732 344456
Q ss_pred CCHHHHHHHHH------------------------HcCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 74 LTVTETLVFIA------------------------LFRL--------------PIKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 74 lTv~e~l~f~~------------------------~~~~--------------~~krvsia~~l~~~p~llllDEPtsgL 115 (413)
.+|+|-+.-+. .+.. .+||+-|||||+++|.+||||||++||
T Consensus 123 ~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GL 202 (257)
T COG1119 123 ETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202 (257)
T ss_pred cccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccC
Confidence 66666653110 0000 128999999999999999999999999
Q ss_pred CHHHHHHH
Q 048308 116 DSTIAKQI 123 (413)
Q Consensus 116 D~~~~~~i 123 (413)
|...+.++
T Consensus 203 Dl~~re~l 210 (257)
T COG1119 203 DLIAREQL 210 (257)
T ss_pred ChHHHHHH
Confidence 99999777
No 324
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=4.5e-24 Score=200.65 Aligned_cols=141 Identities=29% Similarity=0.408 Sum_probs=108.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEe-cCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVA-HSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~-q~~~~~~~lTv~ 77 (413)
+++|||+++++|++++.+|||||||||+||+|+|.+. +.+|.|.+||...- +.+-+.+++|. |-..+.-.+-+.
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 5789999999999999999999999999999999987 47799999998542 23444566655 333333333355
Q ss_pred HHHHHHH------------H-------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-
Q 048308 78 ETLVFIA------------L-------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI- 123 (413)
Q Consensus 78 e~l~f~~------------~-------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i- 123 (413)
|++.... . +.+ .+.|+.+|.+|+++|++|||||||=|||..++..+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 5543321 1 111 12689999999999999999999999999999877
Q ss_pred -------------------------------HHhcCCcEEEecCcchHhHHH
Q 048308 124 -------------------------------LLNSEGNSLHVGKGDGVMSYF 144 (413)
Q Consensus 124 -------------------------------~ll~~G~~v~~G~~~~~~~~f 144 (413)
+++++|+.+|.|+.++...-|
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 578899999999988876554
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=220.45 Aligned_cols=155 Identities=23% Similarity=0.337 Sum_probs=119.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~ 73 (413)
+|+|+|+.+++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ..++.++|++|+. .++++
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 7899999999999999999999999999999999987 467999999976642 2245689999985 35777
Q ss_pred CCHHHH-----HHHH--------------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 74 LTVTET-----LVFI--------------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 74 lTv~e~-----l~f~--------------------~~~~~~---------------~krvsia~~l~~~p~llllDEPts 113 (413)
+|+.++ +.+. ..+++. +||+.||++|+.+|++++|||||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 877655 3211 011110 189999999999999999999999
Q ss_pred CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
|||..++..+. +..+|.++..- .|+.+.....||+++.+.+|+..
T Consensus 421 gLD~~~~~~~~~~l~~l~~~~~tvi~v------------sHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 421 GIDVGAKFEIYQLIAELAKKDKGIIII------------SSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred ccChhHHHHHHHHHHHHHHCCCEEEEE------------CCChHHHHhhCCEEEEEECCEEE
Confidence 99999999883 34467776663 34544455668888888777654
No 326
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=9.1e-24 Score=192.03 Aligned_cols=96 Identities=30% Similarity=0.432 Sum_probs=82.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+ +++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|. .++|++|+.. +
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~--------~i~~~~q~~~----L------- 72 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGI--------TPVYKPQYID----L------- 72 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCE--------EEEEEcccCC----C-------
Confidence 56774 8999999999999999999999999999987 46799999985 2789988653 1
Q ss_pred HHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
-...+||+++|++|+.+|++++|||||+|||..++..+
T Consensus 73 ----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l 110 (177)
T cd03222 73 ----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110 (177)
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 11124999999999999999999999999999999887
No 327
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=1.1e-23 Score=244.45 Aligned_cols=118 Identities=25% Similarity=0.384 Sum_probs=103.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+|+||||||||+++|.|.++ .+|+|.+||.++.+ ..++.++||+|++.+|+. |+|
T Consensus 1234 vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR 1309 (1490)
T TIGR01271 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFR 1309 (1490)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHH
Confidence 7999999999999999999999999999999999985 57999999998753 467889999999999975 999
Q ss_pred HHHHHHH------------Hc-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIA------------LF-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~------------~~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
|||.... .. ++| +||++|||+|+.+|+||+||||||+||..+.
T Consensus 1310 ~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te 1389 (1490)
T TIGR01271 1310 KNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389 (1490)
T ss_pred HHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 9997421 01 111 2899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
..|
T Consensus 1390 ~~I 1392 (1490)
T TIGR01271 1390 QII 1392 (1490)
T ss_pred HHH
Confidence 888
No 328
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.89 E-value=1.4e-23 Score=222.42 Aligned_cols=154 Identities=22% Similarity=0.313 Sum_probs=117.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|+..+++. |++
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~ 414 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLG 414 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhc
Confidence 7999999999999999999999999999999999987 477999999998753 456789999999887753 565
Q ss_pred HH--------H-HHHHHcCC-------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh-
Q 048308 78 ET--------L-VFIALFRL-------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN- 126 (413)
Q Consensus 78 e~--------l-~f~~~~~~-------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll- 126 (413)
|| + .+...+++ .+||++|||+++.+|++++||||||+||+.++..+. +.
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 54 1 11211111 128999999999999999999999999999998873 22
Q ss_pred --c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 127 --S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 127 --~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+ +|+++..=+ |.. .....+|+++.+.+|+..+
T Consensus 495 ~~~~~~~tvi~it------------H~~-~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 495 LLQEMGKTIFAIS------------HDD-HYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred HHHhCCCEEEEEE------------ech-HHHHhCCEEEEEECCEEEE
Confidence 2 466654422 221 1123478888888876653
No 329
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.5e-24 Score=215.05 Aligned_cols=120 Identities=26% Similarity=0.452 Sum_probs=103.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+||||++.||+.+|++||||+||||+++.|-+..+ ..+|+|.++|+++.. ..|+.+|.||||..+|.+ |+
T Consensus 552 ~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI 628 (790)
T KOG0056|consen 552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TI 628 (790)
T ss_pred ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-ee
Confidence 37999999999999999999999999999999999886 467999999998753 457789999999998854 88
Q ss_pred HHHHHHHH------------H--------cCC------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIA------------L--------FRL------------------PIKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~------------~--------~~~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
..|++|+. + +.. .+|||+|||+++++|.+++|||.||+||..
T Consensus 629 ~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~ 708 (790)
T KOG0056|consen 629 LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708 (790)
T ss_pred eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc
Confidence 88887641 1 111 238999999999999999999999999999
Q ss_pred HHHHH
Q 048308 119 IAKQI 123 (413)
Q Consensus 119 ~~~~i 123 (413)
+..+|
T Consensus 709 tER~I 713 (790)
T KOG0056|consen 709 TERAI 713 (790)
T ss_pred cHHHH
Confidence 99888
No 330
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=2.8e-23 Score=204.13 Aligned_cols=119 Identities=27% Similarity=0.461 Sum_probs=102.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~ 72 (413)
++++||+++++||.++|+|+||||||||-.+|.++++ .+|+|.++|++++. ..++.+..|+||+ .+.|
T Consensus 302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 5799999999999999999999999999999999986 35999999998752 3567889999997 5789
Q ss_pred CCCHHHHHHHHHHcCCc------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 73 HLTVTETLVFIALFRLP------------------------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 73 ~lTv~e~l~f~~~~~~~------------------------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
.+||.|-+.=.....-| +||++|||+|+.+|++++||||||.||
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 99999887644332211 289999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
-+-+.+|
T Consensus 459 ~SVQaQv 465 (534)
T COG4172 459 RSVQAQV 465 (534)
T ss_pred HHHHHHH
Confidence 9999887
No 331
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.3e-23 Score=187.06 Aligned_cols=102 Identities=36% Similarity=0.657 Sum_probs=89.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+++++|+++++||+++|+|+||||||||+++|+|.++ +.+|+|.++|.+... ..++.++|++| ++
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------lS-- 82 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------LS-- 82 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee-------CC--
Confidence 6899999999999999999999999999999999987 467999999986542 34567999999 11
Q ss_pred HHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 78 ETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 78 e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
...+||++||++++.+|++++|||||+|||..++..+
T Consensus 83 ---------~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l 119 (157)
T cd00267 83 ---------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERL 119 (157)
T ss_pred ---------HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 1234999999999999999999999999999999887
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=4.1e-23 Score=219.16 Aligned_cols=143 Identities=22% Similarity=0.294 Sum_probs=111.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l 80 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.+++. ..++|++|+. .+++.+||+|++
T Consensus 339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l 409 (556)
T PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEI 409 (556)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEeCchhhcCCCCCHHHHH
Confidence 7899999999999999999999999999999999987 46799998542 2599999986 678899999999
Q ss_pred HHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc
Q 048308 81 VFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS 127 (413)
Q Consensus 81 ~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~ 127 (413)
.+... +++. +||+.||++|+.+|++++|||||+|||+.++..+. ++.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 489 (556)
T PRK11819 410 SGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALL 489 (556)
T ss_pred HhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 76421 1111 18999999999999999999999999999999984 222
Q ss_pred --CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308 128 --EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN 166 (413)
Q Consensus 128 --~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~ 166 (413)
.|.++.. .|+.......||+++.+.+
T Consensus 490 ~~~~tvi~v-------------tHd~~~~~~~~d~i~~l~~ 517 (556)
T PRK11819 490 EFPGCAVVI-------------SHDRWFLDRIATHILAFEG 517 (556)
T ss_pred hCCCeEEEE-------------ECCHHHHHHhCCEEEEEEC
Confidence 2433322 2343333455677766654
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=4e-23 Score=219.05 Aligned_cols=143 Identities=24% Similarity=0.327 Sum_probs=112.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l 80 (413)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+++. ..++|++|+. .+++.+||+|++
T Consensus 337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l 407 (552)
T TIGR03719 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEI 407 (552)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc-------eEEEEEeCCccccCCCCcHHHHH
Confidence 7899999999999999999999999999999999987 46799998542 2599999986 478889999999
Q ss_pred HHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh
Q 048308 81 VFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN 126 (413)
Q Consensus 81 ~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll 126 (413)
.+... +++. +||+.||++|+.+|++++|||||+|||..++..+. +.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 487 (552)
T TIGR03719 408 SGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALL 487 (552)
T ss_pred HhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 76421 1111 18999999999999999999999999999999984 22
Q ss_pred c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308 127 S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN 166 (413)
Q Consensus 127 ~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~ 166 (413)
. .|.++ . +.|+.....+.||+++.+..
T Consensus 488 ~~~~~vi-i------------vsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 488 EFAGCAV-V------------ISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred HCCCeEE-E------------EeCCHHHHHHhCCEEEEEEC
Confidence 2 24333 2 23444334456777777654
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=2e-23 Score=241.00 Aligned_cols=119 Identities=27% Similarity=0.421 Sum_probs=102.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC-CcccCh----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-NNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|++++|||+++|+||||||||||+++|+|.++ +.+|+|.++ |.++.+ .+++.++||+|++.+|+ .|+
T Consensus 400 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI 476 (1466)
T PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSI 476 (1466)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccH
Confidence 7999999999999999999999999999999999997 477999995 565532 35678999999999887 599
Q ss_pred HHHHHHHHH----------------------------------------------------------------------c
Q 048308 77 TETLVFIAL----------------------------------------------------------------------F 86 (413)
Q Consensus 77 ~e~l~f~~~----------------------------------------------------------------------~ 86 (413)
+||+.+... .
T Consensus 477 ~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~ 556 (1466)
T PTZ00265 477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV 556 (1466)
T ss_pred HHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHh
Confidence 999988420 0
Q ss_pred -------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 87 -------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 87 -------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
++| +||++|||+|+.+|++|+||||||+||+.++..+
T Consensus 557 ~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred CcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 111 1899999999999999999999999999999888
No 335
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.6e-23 Score=183.58 Aligned_cols=120 Identities=29% Similarity=0.412 Sum_probs=105.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh---ccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT---VKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~v~q~~~~~~~lTv~e 78 (413)
++.++||++.+||++-|.||||||||||||+|+|+.+ +.+|+|.++|.+.+.. +++..-|...++-+=+.+||.|
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~E 94 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALE 94 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHH
Confidence 6789999999999999999999999999999999998 4779999999887643 3356778888888889999999
Q ss_pred HHHHHHHcCCc------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFRLP------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~~~------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
||.|-....-+ +|||+|||-+++.+++-+||||+++||......+
T Consensus 95 NL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l 169 (209)
T COG4133 95 NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169 (209)
T ss_pred HHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence 99997553221 1899999999999999999999999999988776
No 336
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.5e-24 Score=193.57 Aligned_cols=160 Identities=23% Similarity=0.315 Sum_probs=124.0
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC-cccCh-----hccccEEEEecCCccCCCC
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN-NPLSR-----TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~~~~-----~~~~~~~~v~q~~~~~~~l 74 (413)
++|+|+|+++.|||+-+|+|||||||||++++|+|..+ +.+|++.++| .++.. ..+..+|--+|.+..|+++
T Consensus 19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l 96 (249)
T COG4674 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL 96 (249)
T ss_pred eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc
Confidence 36899999999999999999999999999999999987 4679999999 44432 2355688999999999999
Q ss_pred CHHHHHHHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 75 TVTETLVFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 75 Tv~e~l~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPts 113 (413)
||+|||..+.....+ +|++.|+.-++.+|++|++|||++
T Consensus 97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvA 176 (249)
T COG4674 97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176 (249)
T ss_pred cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccC
Confidence 999999987532111 179999999999999999999999
Q ss_pred CCCHHHHHHH----HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 114 GLDSTIAKQI----LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 114 gLD~~~~~~i----~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
|+--+...+. .-++.++.|.- +.|++.-....||++..+..|.+-..++
T Consensus 177 GMTd~Et~~taeLl~~la~~hsilV------------VEHDM~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 177 GMTDAETEKTAELLKSLAGKHSILV------------VEHDMGFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred CCcHHHHHHHHHHHHHHhcCceEEE------------EeccHHHHHHhhheeEEEeccceeeccc
Confidence 9977666555 23345555544 2234433445678888887776654443
No 337
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.5e-23 Score=188.83 Aligned_cols=121 Identities=25% Similarity=0.343 Sum_probs=103.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hcc--ccEEEEecCC--ccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVK--RKTGFVAHSN--VFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~--~~~~~v~q~~--~~~~~lT 75 (413)
+|+++|+++..|+++.|+|.||||||||+|+|+|.+. ..+|.|.++|.++++ ..+ ..++-|+|++ -..+.+|
T Consensus 21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 7899999999999999999999999999999999987 478999999998864 222 2467799986 5689999
Q ss_pred HHHHHHHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 76 VTETLVFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 76 v~e~l~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
++||+..+...+.. +|-++++.+.++.|++|+|||-|++
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 99999877543110 1568889999999999999999999
Q ss_pred CCHHHHHHHH
Q 048308 115 LDSTIAKQIL 124 (413)
Q Consensus 115 LD~~~~~~i~ 124 (413)
|||.++..|+
T Consensus 179 LDPkta~~vm 188 (263)
T COG1101 179 LDPKTAEFVM 188 (263)
T ss_pred CCcchHHHHH
Confidence 9999999884
No 338
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.88 E-value=5e-23 Score=215.34 Aligned_cols=155 Identities=24% Similarity=0.341 Sum_probs=112.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCC--CC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYL--HL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~--~l 74 (413)
+|+|+|+.+++||+++|+||||||||||+|+|+|..++ ..+|+|.++|++... ..++.++|++|+..++. ..
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 353 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST 353 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC
Confidence 78999999999999999999999999999999997541 247999999976421 23457999999865533 35
Q ss_pred CHHHHHHHHH-----------------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 75 TVTETLVFIA-----------------------LFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 75 Tv~e~l~f~~-----------------------~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
|++|++.+.. .++++ +||++||++|+.+|++++|||||+|||
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD 433 (490)
T PRK10938 354 SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433 (490)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 6776654320 01111 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcCCc-EEEecCcchHhHHHHhcCCCCCCCCC-hhHHHHHhhCCcc
Q 048308 117 STIAKQIL-----LNSEGN-SLHVGKGDGVMSYFVGIGFEPSAAMN-PSDFLLDLANGVV 169 (413)
Q Consensus 117 ~~~~~~i~-----ll~~G~-~v~~G~~~~~~~~f~~~g~~~p~~~n-~ad~~~~~~~~~~ 169 (413)
+.++..+. +..+|. ++.. ..|+.....+ .+|.++.+.+|+.
T Consensus 434 ~~~~~~l~~~L~~l~~~~~~tvii------------vsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 434 PLNRQLVRRFVDVLISEGETQLLF------------VSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEE------------EecchhhhhhhhheeEEEecCCce
Confidence 99999984 223443 2433 2344444444 3677766666643
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=7.8e-23 Score=217.65 Aligned_cols=122 Identities=29% Similarity=0.351 Sum_probs=102.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
.|+++|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++ ..++|++|+..+.+++||+|++.
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---------LKISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe---------eeEEEecccccCCCCCcHHHHHH
Confidence 3788999999999999999999999999999999987 467999886 14899999988888999999997
Q ss_pred HHHH--------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc-
Q 048308 82 FIAL--------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS- 127 (413)
Q Consensus 82 f~~~--------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~- 127 (413)
+... +++. +||++||++|+.+|++++|||||+|||+.++..+. +..
T Consensus 423 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 423 SITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred HHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 6421 1111 18999999999999999999999999999999883 222
Q ss_pred CCcEEEe
Q 048308 128 EGNSLHV 134 (413)
Q Consensus 128 ~G~~v~~ 134 (413)
+|.++..
T Consensus 503 ~g~tvii 509 (590)
T PRK13409 503 REATALV 509 (590)
T ss_pred CCCEEEE
Confidence 3666655
No 340
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=1.1e-22 Score=215.85 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=118.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||.++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|+..+|.. |++
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~ 433 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIG 433 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhh
Confidence 7999999999999999999999999999999999987 477999999988753 456789999999877754 666
Q ss_pred HHHH----------HHHHcC-------Cc-------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--H
Q 048308 78 ETLV----------FIALFR-------LP-------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--L 125 (413)
Q Consensus 78 e~l~----------f~~~~~-------~~-------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--l 125 (413)
||.. .....+ +| +||++|||+++.+|++++|||||++||+.+...+. +
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 6641 111111 11 28999999999999999999999999999998873 2
Q ss_pred ---h-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 126 ---N-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 126 ---l-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+ .+|+++..=+ |+.. ....||.++.+.+|++.
T Consensus 514 ~~~~~~~~~tiiiis------------H~~~-~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 514 LPDLKRQGKTIIIIS------------HDDQ-YFELADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHhCCCEEEEEe------------ccHH-HHHhCCEEEEEECCEEE
Confidence 2 3577766533 2222 12457777777776543
No 341
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=9.1e-23 Score=226.24 Aligned_cols=120 Identities=31% Similarity=0.505 Sum_probs=108.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+++++|+.+++||..+++|+|||||||++|+|.|..+ +.+|++.++|+.... ..++.+||+||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 4789999999999999999999999999999999987 477999999987742 256789999999999999999
Q ss_pred HHHHHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
||+|.+.++++. + +||+++|.+++.+|++++|||||+|+|+.++..+
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l 737 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL 737 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH
Confidence 999999887753 2 1799999999999999999999999999999887
No 342
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=4.8e-22 Score=180.58 Aligned_cols=116 Identities=28% Similarity=0.353 Sum_probs=88.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||||++.+ .+|++.++|... ...++.++|++| .|.+.
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q----------~~~l~ 72 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ----------LQFLI 72 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH----------HHHHH
Confidence 7899999999999999999999999999999953 368888887732 222345889887 23332
Q ss_pred HHHH----cCC--------chhHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 82 FIAL----FRL--------PIKRVSRAQELLIN--PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 82 f~~~----~~~--------~~krvsia~~l~~~--p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
.... ... .+||+++|++|+.+ |++++|||||+|||..++..+. +.++|+++..
T Consensus 73 ~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIi 144 (176)
T cd03238 73 DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144 (176)
T ss_pred HcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1110 110 13899999999999 9999999999999999999883 2235776655
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=6e-23 Score=197.32 Aligned_cols=129 Identities=26% Similarity=0.367 Sum_probs=98.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE-----------ECCcccChh----cc--ccEEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID-----------YNNNPLSRT----VK--RKTGFV 64 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~----~~--~~~~~v 64 (413)
+|+|+| .+++||+++|+||||||||||+|+|+|.++ +.+|+|. ++|.+.... .+ ..++|+
T Consensus 16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 689999 599999999999999999999999999987 4679996 777765321 11 236888
Q ss_pred ecCCccCCCCCHHHHHHHHH--------------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 65 AHSNVFYLHLTVTETLVFIA--------------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 65 ~q~~~~~~~lTv~e~l~f~~--------------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
+|+...++. ++.+++.+.. .+++. +||++||++|+.+|+++++||||+|||
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD 171 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred cchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 888777663 6666654321 11111 289999999999999999999999999
Q ss_pred HHHHHHHH-----HhcCCcEEEe
Q 048308 117 STIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 117 ~~~~~~i~-----ll~~G~~v~~ 134 (413)
+.++..+. +..+|+++..
T Consensus 172 ~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 172 IKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEE
Confidence 99988773 2235666554
No 344
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.87 E-value=1.5e-22 Score=203.94 Aligned_cols=141 Identities=34% Similarity=0.523 Sum_probs=115.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.+|+|+||.+++||.++|+||||||||||.|+|.|..+ +.+|.|.+||.+++. ..-+.+||.||+-.+|+. ||
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TI 426 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TI 426 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cH
Confidence 37999999999999999999999999999999999987 478999999988753 456789999999998865 99
Q ss_pred HHHHH-HH-----------HH--------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLV-FI-----------AL--------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~-f~-----------~~--------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
.||+. |. ++ +++| +||+.+||+|-.||.+++||||-|+||+.
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 99983 21 11 1233 28999999999999999999999999997
Q ss_pred HHHHH------------------------------HHhcCCcEEEecCcchHhHHH
Q 048308 119 IAKQI------------------------------LLNSEGNSLHVGKGDGVMSYF 144 (413)
Q Consensus 119 ~~~~i------------------------------~ll~~G~~v~~G~~~~~~~~f 144 (413)
-...+ ++|++|++--||+.+++....
T Consensus 507 GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 507 GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 76554 456666666666666665554
No 345
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.2e-23 Score=186.69 Aligned_cols=173 Identities=27% Similarity=0.351 Sum_probs=136.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|..+++|.+++++|||||||||||.+++++.+ ..+|+|+++|.++.. ...++++..-|+..+...+||+
T Consensus 16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~ 93 (252)
T COG4604 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVR 93 (252)
T ss_pred eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHH
Confidence 7899999999999999999999999999999999886 578999999998743 4556788889999988999999
Q ss_pred HHHHHHHHc---------------------CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 78 ETLVFIALF---------------------RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 78 e~l~f~~~~---------------------~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
|-+.|...- .+ .+||.-||..++.+.+.++||||.++||...+.+
T Consensus 94 dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~ 173 (252)
T COG4604 94 DLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173 (252)
T ss_pred HHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHH
Confidence 999885311 11 1289999999999999999999999999999988
Q ss_pred HH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHH
Q 048308 123 IL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAY 188 (413)
Q Consensus 123 i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (413)
++ +.. -|+++-. +=|+..-....+|+++.+.+|++...+++++....+-+.+-|
T Consensus 174 iMk~Lrrla~el~Ktivi------------VlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy 233 (252)
T COG4604 174 IMKILRRLADELGKTIVV------------VLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233 (252)
T ss_pred HHHHHHHHHHHhCCeEEE------------EEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh
Confidence 85 222 2666543 235555566779999999999887666554433333343333
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=4e-22 Score=215.27 Aligned_cols=123 Identities=22% Similarity=0.321 Sum_probs=102.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||.++|+||||||||||+|+|+|.+++ .+|+|.+++ ++.++||+|++.+++. |++||+.
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~ 536 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQII 536 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHh
Confidence 78999999999999999999999999999999999863 569998764 4579999999988776 9999997
Q ss_pred HHHH--------------------cCC-----------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 82 FIAL--------------------FRL-----------------------PIKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 82 f~~~--------------------~~~-----------------------~~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+... +++ .+||++|||+|+.+|++++|||||+|||+.
T Consensus 537 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 537 YPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD 616 (659)
T ss_pred cCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 6310 011 018999999999999999999999999999
Q ss_pred HHHHHH--HhcCCcEEEe
Q 048308 119 IAKQIL--LNSEGNSLHV 134 (413)
Q Consensus 119 ~~~~i~--ll~~G~~v~~ 134 (413)
+...+. +.+.|+++..
T Consensus 617 ~~~~l~~~l~~~~~tvI~ 634 (659)
T TIGR00954 617 VEGYMYRLCREFGITLFS 634 (659)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 999884 3344665544
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=1.4e-22 Score=218.18 Aligned_cols=114 Identities=26% Similarity=0.375 Sum_probs=97.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l 80 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.+ |.+ ..++|++|+. .+++++||.|++
T Consensus 334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~------~~i~y~~q~~~~l~~~~tv~e~l 404 (635)
T PRK11147 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK------LEVAYFDQHRAELDPEKTVMDNL 404 (635)
T ss_pred EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC------cEEEEEeCcccccCCCCCHHHHH
Confidence 7899999999999999999999999999999999986 46799998 432 2599999975 578899999999
Q ss_pred HHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 81 VFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 81 ~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.+... +.+. ++|+.||++|+.+|++|||||||+|||..++..+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~ 480 (635)
T PRK11147 405 AEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE 480 (635)
T ss_pred HhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 76421 0111 17999999999999999999999999999998883
No 348
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.6e-22 Score=190.24 Aligned_cols=107 Identities=32% Similarity=0.440 Sum_probs=84.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++||||++++||+++|+|+||||||||-|+|.|+.+ +.+|+|.++|++..... .+. ..-.|.|.|.
T Consensus 28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~---------~~~--~~~~v~elL~ 94 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKLS---------KEE--RRERVLELLE 94 (268)
T ss_pred EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcc---------hhH--HHHHHHHHHH
Confidence 6899999999999999999999999999999999997 57899999998754321 000 0001222222
Q ss_pred HHHHcCC---------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 82 FIALFRL---------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 82 f~~~~~~---------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
..++ .+||+.|||||+.+|+++++|||+|.||.+.+.+++
T Consensus 95 ---~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl 149 (268)
T COG4608 95 ---KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL 149 (268)
T ss_pred ---HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH
Confidence 2222 238999999999999999999999999999999883
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=2.2e-22 Score=233.77 Aligned_cols=111 Identities=32% Similarity=0.500 Sum_probs=94.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||.++|+||||||||||+++|.|.+++ .+|.+. ..++.++||+|++.+++ -|+|||+.
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~--------~~~~~Iayv~Q~p~Lf~-gTIreNI~ 700 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV--------VIRGSVAYVPQVSWIFN-ATVRENIL 700 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE--------EecCcEEEEcCcccccc-ccHHHHhh
Confidence 79999999999999999999999999999999999874 556542 23567999999999885 59999999
Q ss_pred HHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|.... .+| +||++||||+..+|++++||||||+||+.++.++
T Consensus 701 fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I 779 (1495)
T PLN03232 701 FGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779 (1495)
T ss_pred cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 85311 111 2899999999999999999999999999998876
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=5.8e-22 Score=176.67 Aligned_cols=120 Identities=27% Similarity=0.428 Sum_probs=99.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h--hccccEEEEecCCc--cCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R--TVKRKTGFVAHSNV--FYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~--~~~~~~~~v~q~~~--~~~~lT 75 (413)
+++.|||+++.|+.+|++|.||||||||.|+|+|..+ +.+|+|.+||+++. + ...+.+-.++||+. +.|.+.
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 5788999999999999999999999999999999998 58899999999874 1 22345788999874 556666
Q ss_pred HHHHHHHHHHcCC-----------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 76 VTETLVFIALFRL-----------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 76 v~e~l~f~~~~~~-----------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+.+-|....++.. .+|||++||||+.+|++++.||...+||...+
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smr 185 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHH
Confidence 6666665443321 12899999999999999999999999999999
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
.++
T Consensus 186 sQl 188 (267)
T COG4167 186 SQL 188 (267)
T ss_pred HHH
Confidence 887
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.87 E-value=5e-22 Score=230.58 Aligned_cols=110 Identities=27% Similarity=0.454 Sum_probs=97.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++ .||+||+.
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCC-ccHHHHHH
Confidence 6899999999999999999999999999999999987 4679999987 3999999998886 49999998
Q ss_pred HHHHc------------C-------C------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIALF------------R-------L------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~~------------~-------~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|.... . + .+||++|||+++.+|++++|||||+|||+.++.++
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 74210 0 0 02899999999999999999999999999999877
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.6e-22 Score=214.09 Aligned_cols=113 Identities=28% Similarity=0.421 Sum_probs=93.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC--ccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN--VFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.+++. ..++|++|+. .+.+..|+.++
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~~ 397 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-------IKLGYFAQHQLEFLRADESPLQH 397 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC-------EEEEEecCcchhhCCccchHHHH
Confidence 7899999999999999999999999999999999987 46799998742 2589999974 34566788877
Q ss_pred HHHH-------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFI-------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~-------------~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.-. ..++++ ++|+.||++|+.+|++|+|||||+|||..++..+
T Consensus 398 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l 469 (638)
T PRK10636 398 LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469 (638)
T ss_pred HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 5311 111221 1899999999999999999999999999999887
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=4.3e-22 Score=231.96 Aligned_cols=110 Identities=29% Similarity=0.509 Sum_probs=96.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCee-EEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR-GNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~-G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+|+|+|+++++||.++|+||+|||||||+++|.|.++ +.+ |+|.+ ++.++||+|++.+++ .|+|||+
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l---------~~~Iayv~Q~p~Lfn-gTIreNI 699 (1622)
T PLN03130 632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI---------RGTVAYVPQVSWIFN-ATVRDNI 699 (1622)
T ss_pred eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------cCeEEEEcCccccCC-CCHHHHH
Confidence 7999999999999999999999999999999999987 467 89875 446999999998875 6999999
Q ss_pred HHHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.|.... .+| +||++||||+..+|++++||||||+||+.++.++
T Consensus 700 ~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred hCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 875211 111 2899999999999999999999999999998776
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=1.2e-21 Score=212.39 Aligned_cols=144 Identities=23% Similarity=0.375 Sum_probs=105.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||||+|+|.++ +.+|+|.+++. ..++|++|+. .+.+++.++..
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-------~~igyv~Q~~--~~~l~~~~~~~ 592 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-------VRMAVFSQHH--VDGLDLSSNPL 592 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc-------eeEEEEeccc--cccCCcchhHH
Confidence 7899999999999999999999999999999999987 46799998752 3599999975 23445544422
Q ss_pred H--H---------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc
Q 048308 82 F--I---------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS 127 (413)
Q Consensus 82 f--~---------------~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~ 127 (413)
. . ..+++. +||++||++|+.+|++|+|||||+|||..++..++ +..
T Consensus 593 ~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred HHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1 1 111111 18999999999999999999999999999998874 222
Q ss_pred -CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 128 -EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 128 -~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+|.++.. .|+.....+.||.++.+.+|.+
T Consensus 673 ~~gtvIiv-------------SHd~~~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 673 FQGGVLMV-------------SHDEHLISGSVDELWVVSEGKV 702 (718)
T ss_pred cCCEEEEE-------------ECCHHHHHHhCCEEEEEECCEE
Confidence 4533333 2333333344666666666654
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.86 E-value=8.3e-22 Score=229.29 Aligned_cols=110 Identities=26% Similarity=0.467 Sum_probs=96.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++| .++||+|++.++ +.|++||+.
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g---------~i~yv~Q~~~l~-~~Ti~eNI~ 720 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG---------SVAYVPQQAWIQ-NDSLRENIL 720 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC---------EEEEEcCCcccc-CCcHHHHhh
Confidence 7999999999999999999999999999999999987 4679999987 499999998775 579999998
Q ss_pred HHHH------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIAL------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|... +. +| +||++|||++..+|++++||||||+||+.++..+
T Consensus 721 ~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i 799 (1522)
T TIGR00957 721 FGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799 (1522)
T ss_pred cCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 7411 00 11 2899999999999999999999999999999887
No 356
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-22 Score=198.14 Aligned_cols=120 Identities=32% Similarity=0.483 Sum_probs=103.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|+++++|+.++++||||+||||++++|-+.++ ..+|.|.++|+.+.. ..++-+|.||||..+|. -|.
T Consensus 277 ~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN-Dti 353 (497)
T COG5265 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTI 353 (497)
T ss_pred hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh-hhH
Confidence 48999999999999999999999999999999999987 477999999998743 45678999999998874 488
Q ss_pred HHHHHHHHH---------------c-----CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL---------------F-----RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~---------------~-----~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
..|+.++.- . .+| +|||+|||+++++|+++++||.||.||..
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 888876410 0 112 38999999999999999999999999999
Q ss_pred HHHHH
Q 048308 119 IAKQI 123 (413)
Q Consensus 119 ~~~~i 123 (413)
+...+
T Consensus 434 te~~i 438 (497)
T COG5265 434 TEQAI 438 (497)
T ss_pred HHHHH
Confidence 99888
No 357
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=2.9e-21 Score=224.67 Aligned_cols=110 Identities=26% Similarity=0.451 Sum_probs=94.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+|||||||||||++|+|.++ +.+|+|.++ +.++|++|++.++ +.||+||+.
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~-~~Tv~enI~ 742 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIM-NATVRGNIL 742 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccC-CCcHHHHHH
Confidence 6899999999999999999999999999999999987 467999763 4699999998876 579999998
Q ss_pred HHHH------------cC-------C------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIAL------------FR-------L------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~------------~~-------~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|... ++ + .+||++|||+|+.+|++++|||||++||+.++.++
T Consensus 743 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred cCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 7310 10 0 02899999999999999999999999999988766
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=6.6e-21 Score=177.62 Aligned_cols=135 Identities=23% Similarity=0.294 Sum_probs=106.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+||||++++||.++|+|+||||||||||+|+|.++ +.+|+|.++|+.... ..-.--+-|.+|.+||+.
T Consensus 42 aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~l--------i~lg~Gf~pelTGreNi~ 111 (249)
T COG1134 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPL--------IELGAGFDPELTGRENIY 111 (249)
T ss_pred EecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehh--------hhcccCCCcccchHHHHH
Confidence 7999999999999999999999999999999999998 478999999874321 111223457899999998
Q ss_pred HHHHc-CCch--------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-----
Q 048308 82 FIALF-RLPI--------------------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----- 123 (413)
Q Consensus 82 f~~~~-~~~~--------------------------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i----- 123 (413)
+...+ ++.. -|+.++.+...+|++|++||-.+--|+.-+++-
T Consensus 112 l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~ 191 (249)
T COG1134 112 LRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLN 191 (249)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHH
Confidence 86543 2211 399999999999999999999999999888665
Q ss_pred --------------------------HHhcCCcEEEecCcchHhHHHHh
Q 048308 124 --------------------------LLNSEGNSLHVGKGDGVMSYFVG 146 (413)
Q Consensus 124 --------------------------~ll~~G~~v~~G~~~~~~~~f~~ 146 (413)
++|++|++.+.|+++++.+++++
T Consensus 192 e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 192 ELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 35566666666666666666544
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=6.1e-21 Score=168.94 Aligned_cols=120 Identities=33% Similarity=0.563 Sum_probs=89.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc---cc-----Chh-----ccccEEEEecCCc
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PL-----SRT-----VKRKTGFVAHSNV 69 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~-----~~~-----~~~~~~~v~q~~~ 69 (413)
.+||||.+.|||+++|+|+|||||||||+||++++.+ ..|+|.|.-. +. ++. .+..=|+|.|++.
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 4799999999999999999999999999999999974 6799988543 22 121 1224589999863
Q ss_pred --c----CCCCCHHHHHHHH-----------H-----HcCC--------c-------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308 70 --F----YLHLTVTETLVFI-----------A-----LFRL--------P-------IKRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 70 --~----~~~lTv~e~l~f~-----------~-----~~~~--------~-------~krvsia~~l~~~p~llllDEPt 112 (413)
+ ...-.+.|-+.-. + .... | .||+.|||.|++.|+++|+||||
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT 179 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence 1 2223344544211 0 1111 1 18999999999999999999999
Q ss_pred CCCCHHHHHHHH
Q 048308 113 SGLDSTIAKQIL 124 (413)
Q Consensus 113 sgLD~~~~~~i~ 124 (413)
-|||.+-+..++
T Consensus 180 GGLDVSVQARLL 191 (258)
T COG4107 180 GGLDVSVQARLL 191 (258)
T ss_pred CCcchhhHHHHH
Confidence 999999988774
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.3e-21 Score=205.86 Aligned_cols=113 Identities=23% Similarity=0.334 Sum_probs=85.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH-
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL- 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l- 80 (413)
+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.. .++|++|+.... ..|+.+.+
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-------~i~~~~q~~~~~-~~~~~~~v~ 85 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-------QLAWVNQETPAL-PQPALEYVI 85 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC-------EEEEEecCCCCC-CCCHHHHHH
Confidence 7899999999999999999999999999999999876 467999998742 255555542211 12221111
Q ss_pred -----------------------HH----------------------HHHcCCc---------------hhHHHHHHHHh
Q 048308 81 -----------------------VF----------------------IALFRLP---------------IKRVSRAQELL 100 (413)
Q Consensus 81 -----------------------~f----------------------~~~~~~~---------------~krvsia~~l~ 100 (413)
.+ ...+++. +||+.||++|+
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~ 165 (638)
T PRK10636 86 DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165 (638)
T ss_pred HhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence 00 0111221 18999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 101 INPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 101 ~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.+|++|+|||||+|||..+...+.
T Consensus 166 ~~P~lLLLDEPtn~LD~~~~~~L~ 189 (638)
T PRK10636 166 CRSDLLLLDEPTNHLDLDAVIWLE 189 (638)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHH
Confidence 999999999999999999998873
No 361
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=7.1e-21 Score=204.99 Aligned_cols=146 Identities=23% Similarity=0.324 Sum_probs=99.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHH----
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVT---- 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~---- 77 (413)
+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.. .++|++|++......+|.
T Consensus 18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~ 88 (635)
T PRK11147 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL-------IVARLQQDPPRNVEGTVYDFVA 88 (635)
T ss_pred eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC-------EEEEeccCCCCCCCCCHHHHHH
Confidence 7899999999999999999999999999999999987 467999998742 134444432111112222
Q ss_pred --------------------------HHHHHHH-----------------------HcCC------------chhHHHHH
Q 048308 78 --------------------------ETLVFIA-----------------------LFRL------------PIKRVSRA 96 (413)
Q Consensus 78 --------------------------e~l~f~~-----------------------~~~~------------~~krvsia 96 (413)
+++.... .+++ .+||++||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LA 168 (635)
T PRK11147 89 EGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALG 168 (635)
T ss_pred HhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHH
Confidence 2221110 1111 02899999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh-c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 97 QELLINPSLLFLDEPASGLDSTIAKQIL-LN-S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 97 ~~l~~~p~llllDEPtsgLD~~~~~~i~-ll-~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
++|+.+|++|||||||+|||..++..+. ++ . +|.++.. .|+.....+.+|.++.+.+|..
T Consensus 169 raL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvliv-------------sHd~~~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 169 RALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFI-------------SHDRSFIRNMATRIVDLDRGKL 231 (635)
T ss_pred HHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEE-------------eCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999998873 22 2 3433333 2333333455677777766654
No 362
>PRK13409 putative ATPase RIL; Provisional
Probab=99.83 E-value=1.2e-20 Score=200.83 Aligned_cols=120 Identities=28% Similarity=0.371 Sum_probs=93.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE-----------ECCcccChh------ccccEEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID-----------YNNNPLSRT------VKRKTGFV 64 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~------~~~~~~~v 64 (413)
+|++++ .+++||+++|+||||||||||+|+|+|.+++ ..|+|. ++|.++... .+..+++.
T Consensus 89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 689999 9999999999999999999999999999874 579997 888775321 11235555
Q ss_pred ecCCccCCC---CCHHHHHHHHH----------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 65 AHSNVFYLH---LTVTETLVFIA----------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 65 ~q~~~~~~~---lTv~e~l~f~~----------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+|.....+. .||+|++.... .+++. +||++||++|+.+|++++|||||+|||+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 554333332 39999885421 12221 2899999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 118 TIAKQIL 124 (413)
Q Consensus 118 ~~~~~i~ 124 (413)
.++..+.
T Consensus 246 ~~~~~l~ 252 (590)
T PRK13409 246 RQRLNVA 252 (590)
T ss_pred HHHHHHH
Confidence 9998884
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=188.42 Aligned_cols=146 Identities=27% Similarity=0.421 Sum_probs=111.7
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++++|+|+++.+|+-++|+|+||||||||||+|+|... +.+|+|...+. ..++|+.|+....+..||.+.+
T Consensus 17 ~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv~~~v 87 (530)
T COG0488 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-------LRVGYLSQEPPLDPEKTVLDYV 87 (530)
T ss_pred eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------ceEEEeCCCCCcCCCccHHHHH
Confidence 37899999999999999999999999999999999987 46799987542 2599999999999999999876
Q ss_pred HHHHH-------------------------------------------------cCCc-------------hhHHHHHHH
Q 048308 81 VFIAL-------------------------------------------------FRLP-------------IKRVSRAQE 98 (413)
Q Consensus 81 ~f~~~-------------------------------------------------~~~~-------------~krvsia~~ 98 (413)
.-+.. ++.+ ++|+.+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~a 167 (530)
T COG0488 88 IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARA 167 (530)
T ss_pred HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHH
Confidence 43210 0011 169999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHH---HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 99 LLINPSLLFLDEPASGLDSTIAKQI---LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 99 l~~~p~llllDEPtsgLD~~~~~~i---~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
|+.+|++|+|||||++||..+..-+ +.-.+|-++...+ - .+| -.+.|++++++..|.
T Consensus 168 L~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSH---D-R~F---------Ld~V~t~I~~ld~g~ 227 (530)
T COG0488 168 LLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSH---D-RYF---------LDNVATHILELDRGK 227 (530)
T ss_pred HhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeC---C-HHH---------HHHHhhheEEecCCc
Confidence 9999999999999999999998766 3334674333322 1 122 235677777777664
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=3.3e-20 Score=208.19 Aligned_cols=119 Identities=26% Similarity=0.357 Sum_probs=103.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|||||++|+|||-++|+|+.|||||||.++|-++.+ +.+|+|.+||.++.+ ..|++++.+|||+.+|. -|||
T Consensus 1155 VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR 1231 (1381)
T KOG0054|consen 1155 VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVR 1231 (1381)
T ss_pred hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Cccc
Confidence 7999999999999999999999999999999999987 477999999998864 57889999999999986 4999
Q ss_pred HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+--.. + ++| +|-+.+||||+++++||+|||+|++.|+.|-
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 99863211 1 111 2679999999999999999999999999998
Q ss_pred HHH
Q 048308 121 KQI 123 (413)
Q Consensus 121 ~~i 123 (413)
..|
T Consensus 1312 ~lI 1314 (1381)
T KOG0054|consen 1312 ALI 1314 (1381)
T ss_pred HHH
Confidence 666
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.3e-20 Score=162.97 Aligned_cols=151 Identities=26% Similarity=0.442 Sum_probs=110.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc--c-----C-----hhccccEEEEecCCc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP--L-----S-----RTVKRKTGFVAHSNV 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~--~-----~-----~~~~~~~~~v~q~~~ 69 (413)
+++|+|++++.||.+++=||||||||||||+|-+.+. +.+|+|++.... + . +..++.+|||.|--.
T Consensus 26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 6899999999999999999999999999999999887 467999875431 1 1 123456999999877
Q ss_pred cCCCCCHHHHHH-------------------HHHHcCCch---------------hHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 70 FYLHLTVTETLV-------------------FIALFRLPI---------------KRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 70 ~~~~lTv~e~l~-------------------f~~~~~~~~---------------krvsia~~l~~~p~llllDEPtsgL 115 (413)
..|.....|-.. ...++++|+ |||.|||.++.|-++|+|||||+.|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 666655444321 112344443 8999999999999999999999999
Q ss_pred CHHHHHHHH-Hhc----CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308 116 DSTIAKQIL-LNS----EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN 166 (413)
Q Consensus 116 D~~~~~~i~-ll~----~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~ 166 (413)
|+.++..++ ++. .|..+ .| .| |+...+...||.++++..
T Consensus 184 Da~Nr~vVveli~e~Ka~GaAl-vG-------IF----HDeevre~vadR~~~~~~ 227 (235)
T COG4778 184 DATNRAVVVELIREAKARGAAL-VG-------IF----HDEEVREAVADRLLDVSA 227 (235)
T ss_pred cccchHHHHHHHHHHHhcCceE-EE-------ee----ccHHHHHHHhhheeeccc
Confidence 999998886 332 23221 11 12 333445567888887754
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=2e-19 Score=201.93 Aligned_cols=128 Identities=26% Similarity=0.488 Sum_probs=114.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
.|+|||+++++|+++||+|+-||||||||.+|.|..+ ..+|++.++|. ++||+|++-++ +-|||||+.
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------iaYv~Q~pWI~-ngTvreNIL 603 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------VAYVPQQPWIQ-NGTVRENIL 603 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe---------EEEeccccHhh-CCcHHHhhh
Confidence 5899999999999999999999999999999999987 58899999885 99999999876 569999999
Q ss_pred HHHHcC------------C-------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-
Q 048308 82 FIALFR------------L-------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI- 123 (413)
Q Consensus 82 f~~~~~------------~-------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i- 123 (413)
|...+. + .++|+++|||+-.|+++++||.|.|++|+++..++
T Consensus 604 FG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 604 FGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred cCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 864321 1 12799999999999999999999999999999887
Q ss_pred -----------------------------HHhcCCcEEEecCcchHh
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGVM 141 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~~ 141 (413)
++|++|++...|+.++..
T Consensus 684 ~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 588899999999988876
No 367
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.79 E-value=3.8e-19 Score=175.15 Aligned_cols=139 Identities=28% Similarity=0.410 Sum_probs=111.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC---h-h----ccccEEEEecCC--
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS---R-T----VKRKTGFVAHSN-- 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~---~-~----~~~~~~~v~q~~-- 68 (413)
++++||+.+++||.+||+|+||||||-..+.+.|+++.. ..+|+|.++|.++- + . .-.+|+.++|++
T Consensus 25 aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMt 104 (534)
T COG4172 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMT 104 (534)
T ss_pred eeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccc
Confidence 689999999999999999999999999999999998742 46799999998752 1 1 223799999997
Q ss_pred ccCCCCCHHHHHHHHHHc--------------------CCc-----------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308 69 VFYLHLTVTETLVFIALF--------------------RLP-----------------IKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 69 ~~~~~lTv~e~l~f~~~~--------------------~~~-----------------~krvsia~~l~~~p~llllDEP 111 (413)
.+.|--|+.+-+.=...+ ++| +|||-||.||+.+|++||.|||
T Consensus 105 SLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEP 184 (534)
T COG4172 105 SLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184 (534)
T ss_pred ccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCC
Confidence 455666766554322111 111 2899999999999999999999
Q ss_pred CCCCCHHHHHHH--------------------------------HHhcCCcEEEecCcchH
Q 048308 112 ASGLDSTIAKQI--------------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 112 tsgLD~~~~~~i--------------------------------~ll~~G~~v~~G~~~~~ 140 (413)
|++||...+.+| ++|.+|+++..|+.+..
T Consensus 185 TTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred cchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence 999999999887 47889999999986654
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.77 E-value=1.2e-18 Score=161.25 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=88.6
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-------CeeEEEEECCcccCh-hccccEEEEecCCccC----
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-------ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFY---- 71 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-------~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~---- 71 (413)
+++++++++| +++|+||||||||||+++|+|...+. ...|++.++|..... ..++.+++|+|+...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 5789999999 99999999999999999999886421 223567777776533 2346799999987654
Q ss_pred CCCCHHHHHHHHHHcCC--------chhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 72 LHLTVTETLVFIALFRL--------PIKRVSRAQELL----INPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~~~--------~~krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.-.+.|.+........ .+||++||++++ .+|+++++||||+|||...+..+.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~ 157 (197)
T cd03278 93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA 157 (197)
T ss_pred ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH
Confidence 12234555544110000 128999999987 466999999999999999999884
No 369
>PLN03073 ABC transporter F family; Provisional
Probab=99.76 E-value=5.1e-19 Score=192.01 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=98.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCccc-----Ch-------------hccccEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPL-----SR-------------TVKRKTG 62 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~-----~~-------------~~~~~~~ 62 (413)
+|+|+|+++++||.++|+||||||||||||+|+|+... -+..|+|.+.++.. .. ..++.++
T Consensus 192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~ 271 (718)
T PLN03073 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQ 271 (718)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997421 14568887644321 10 0112245
Q ss_pred EEecCCccCC----------------CCCHHHHH----H----------------HHHHcCCc---------------hh
Q 048308 63 FVAHSNVFYL----------------HLTVTETL----V----------------FIALFRLP---------------IK 91 (413)
Q Consensus 63 ~v~q~~~~~~----------------~lTv~e~l----~----------------f~~~~~~~---------------~k 91 (413)
+++|+..+.. .-.+.+.+ . ....++++ ++
T Consensus 272 ~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~ 351 (718)
T PLN03073 272 LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM 351 (718)
T ss_pred HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH
Confidence 5555422110 00000100 0 00111221 28
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 92 RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 92 rvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
|++||++|+.+|++|+|||||+|||+.+...+. +..-|.++..-+ |+.....+.+|.++.+.+|..
T Consensus 352 rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivs------------Hd~~~l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVS------------HAREFLNTVVTDILHLHGQKL 419 (718)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEE------------CCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999884 333344444422 232222345666677666654
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=1e-17 Score=175.28 Aligned_cols=126 Identities=33% Similarity=0.427 Sum_probs=101.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l 80 (413)
+++++|+.+++|+.++|+||||+|||||||+|+|...+ .+|.|.+.- .-.+||..|+. .+.++.|+.|.+
T Consensus 337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~-------~v~igyf~Q~~~~l~~~~t~~d~l 407 (530)
T COG0488 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGE-------TVKIGYFDQHRDELDPDKTVLEEL 407 (530)
T ss_pred eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCC-------ceEEEEEEehhhhcCccCcHHHHH
Confidence 78999999999999999999999999999999998864 579988753 23599999986 434777898888
Q ss_pred HHHH-------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc-CC
Q 048308 81 VFIA-------------LFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS-EG 129 (413)
Q Consensus 81 ~f~~-------------~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~-~G 129 (413)
.=.. .+..+ +.|+.+|+.++.+|.+|+|||||+.||..+...+- +.+ +|
T Consensus 408 ~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G 487 (530)
T COG0488 408 SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG 487 (530)
T ss_pred HhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC
Confidence 5322 11111 26999999999999999999999999999998882 333 78
Q ss_pred cEEEecC
Q 048308 130 NSLHVGK 136 (413)
Q Consensus 130 ~~v~~G~ 136 (413)
.++...+
T Consensus 488 tvl~VSH 494 (530)
T COG0488 488 TVLLVSH 494 (530)
T ss_pred eEEEEeC
Confidence 8776643
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=8.7e-18 Score=158.72 Aligned_cols=132 Identities=24% Similarity=0.277 Sum_probs=77.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHH-HHHhCCC--------CCC--CeeEEEEECCcccChhcc-ccEEEEec-C
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLP-TTLGGRL--------STG--ETRGNIDYNNNPLSRTVK-RKTGFVAH-S 67 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl-~~l~g~~--------~~~--~~~G~i~~~g~~~~~~~~-~~~~~v~q-~ 67 (413)
.+|+|||+++++||+++|+|+||||||||+ ..+...- .+. ...|.+.. +.....+ ...++..| +
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDK---PDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCc---cccccccCCCceEEecCC
Confidence 378999999999999999999999999995 4443100 000 00011100 0000011 12233333 3
Q ss_pred Cc-cCCCCCHH---HHHHHH----------------HHcCCc---------------hhHHHHHHHHhhCC--CEEEEeC
Q 048308 68 NV-FYLHLTVT---ETLVFI----------------ALFRLP---------------IKRVSRAQELLINP--SLLFLDE 110 (413)
Q Consensus 68 ~~-~~~~lTv~---e~l~f~----------------~~~~~~---------------~krvsia~~l~~~p--~llllDE 110 (413)
.. ..+..+|. |...+. ..++++ +||++||++|+.+| ++++|||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE 165 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE 165 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 22 22333433 211111 111111 28999999999998 5999999
Q ss_pred CCCCCCHHHHHHHH-----HhcCCcEEEec
Q 048308 111 PASGLDSTIAKQIL-----LNSEGNSLHVG 135 (413)
Q Consensus 111 PtsgLD~~~~~~i~-----ll~~G~~v~~G 135 (413)
||+|||+.++.++. +..+|.++..-
T Consensus 166 Pt~gLD~~~~~~l~~~l~~~~~~g~tii~i 195 (226)
T cd03270 166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVV 195 (226)
T ss_pred CccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999998883 22457665553
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=1.1e-17 Score=160.83 Aligned_cols=133 Identities=33% Similarity=0.433 Sum_probs=93.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHh-----CCCC-----CC---Cee------EEEEECCcccChhccc---
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG-----GRLS-----TG---ETR------GNIDYNNNPLSRTVKR--- 59 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~-----g~~~-----~~---~~~------G~i~~~g~~~~~~~~~--- 59 (413)
-|+|||..++.|++++|.|+||||||||++.+. ..+. ++ ... --|.++..++....|.
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 379999999999999999999999999998551 1110 10 111 2356666554211110
Q ss_pred ---------------------------cEEEEecCCccCCCCCHHHHHHHHHHc-------------CCc----------
Q 048308 60 ---------------------------KTGFVAHSNVFYLHLTVTETLVFIALF-------------RLP---------- 89 (413)
Q Consensus 60 ---------------------------~~~~v~q~~~~~~~lTv~e~l~f~~~~-------------~~~---------- 89 (413)
.+.|..++......+||.|++.|...+ +++
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~ 169 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATT 169 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcccc
Confidence 134555555556799999999875431 121
Q ss_pred -----hhHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 90 -----IKRVSRAQELLIN---PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 90 -----~krvsia~~l~~~---p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
+||+.||++|+.+ |++++|||||+|||+.....+. +.++|.++..
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 2899999999996 7999999999999999998883 3345776655
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=2.5e-17 Score=156.68 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=86.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC----------------CCCCC----eeE--EEEECCcc----cC--h-hccccEEE
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR----------------LSTGE----TRG--NIDYNNNP----LS--R-TVKRKTGF 63 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~----------------~~~~~----~~G--~i~~~g~~----~~--~-~~~~~~~~ 63 (413)
|++++|+||||||||||+++|++. ..++. .++ +|.+++.. .. + ..++.+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~ 102 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL 102 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence 789999999999999999999832 22111 112 45555421 11 1 34566899
Q ss_pred EecCCccCC-CCCHHHHHHHHHHcCCc----------------------------------hhHHHHHHHHhh----CCC
Q 048308 64 VAHSNVFYL-HLTVTETLVFIALFRLP----------------------------------IKRVSRAQELLI----NPS 104 (413)
Q Consensus 64 v~q~~~~~~-~lTv~e~l~f~~~~~~~----------------------------------~krvsia~~l~~----~p~ 104 (413)
++|+..+++ ..|..|...+...++++ +||++||++|+. +|+
T Consensus 103 ~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~ 182 (243)
T cd03272 103 KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAP 182 (243)
T ss_pred CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCC
Confidence 988877766 46877777665543210 179999999974 589
Q ss_pred EEEEeCCCCCCCHHHHHHHH----HhcCCcEEEecC
Q 048308 105 LLFLDEPASGLDSTIAKQIL----LNSEGNSLHVGK 136 (413)
Q Consensus 105 llllDEPtsgLD~~~~~~i~----ll~~G~~v~~G~ 136 (413)
++++||||+|||+.++..+. -+.+|.++..-+
T Consensus 183 illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~ 218 (243)
T cd03272 183 FYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218 (243)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999998883 223466666543
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.8e-17 Score=169.99 Aligned_cols=155 Identities=26% Similarity=0.446 Sum_probs=127.9
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecC---CccCCCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHS---NVFYLHL 74 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~---~~~~~~l 74 (413)
++|+||++++||+++|-|-=|||+|-|+++|.|..+ ...|+|.+||++.. +..+..++||+.| +-++..+
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 579999999999999999999999999999999654 45899999999764 2456679999987 4678899
Q ss_pred CHHHHHHHHHHcCC------c---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308 75 TVTETLVFIALFRL------P---------------------------------IKRVSRAQELLINPSLLFLDEPASGL 115 (413)
Q Consensus 75 Tv~e~l~f~~~~~~------~---------------------------------~krvsia~~l~~~p~llllDEPtsgL 115 (413)
+|+||+.++...+. + .|||.||+.|.++|++|||||||.|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 99999987732111 0 18999999999999999999999999
Q ss_pred CHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 116 DSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 116 D~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
|..+..+|. +-++|..|-.=+ -+.|+....||.++.+..|+..+
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iS------------SElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMIS------------SELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEe------------CChHHHHhhCCEEEEEECCEEEE
Confidence 999999984 556787655422 25567778899999999987755
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.68 E-value=1.2e-17 Score=148.19 Aligned_cols=172 Identities=26% Similarity=0.409 Sum_probs=120.1
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
|-.+|+.+..||+.-++|||||||||||-.++|+.+ .+|+|.++|.+.+. +..|..+|..|+..-...+-|..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 445789999999999999999999999999999985 67999999998753 34566778777654444444555
Q ss_pred HHH-------------HHH-HcCCch--------------hHHHHHHHHh-----hCC--CEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLV-------------FIA-LFRLPI--------------KRVSRAQELL-----INP--SLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~-------------f~~-~~~~~~--------------krvsia~~l~-----~~p--~llllDEPtsgLD~~~~~~i 123 (413)
.|. ..+ .+++.. |||-+|...+ .|| ++++||||.++||...+..+
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL 171 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL 171 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence 443 222 222221 7888876554 355 79999999999999877555
Q ss_pred -----HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHHH
Q 048308 124 -----LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYK 189 (413)
Q Consensus 124 -----~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (413)
-+-.+|..|... +|+....-..||.+.-+..|.....++.++.-+.+-+...|.
T Consensus 172 drll~~~c~~G~~vims------------~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg 230 (248)
T COG4138 172 DRLLSALCQQGLAIVMS------------SHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYG 230 (248)
T ss_pred HHHHHHHHhCCcEEEEe------------ccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhc
Confidence 133468766553 345444456688888888887765555444444555555554
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=1.3e-17 Score=156.18 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=30.8
Q ss_pred hHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHH
Q 048308 91 KRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 91 krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i~ 124 (413)
||++||++++. +|+++++||||+|||+.++..+.
T Consensus 134 ~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~ 171 (212)
T cd03274 134 TLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA 171 (212)
T ss_pred HHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH
Confidence 89999999974 57999999999999999998873
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.67 E-value=2.7e-16 Score=164.41 Aligned_cols=133 Identities=28% Similarity=0.360 Sum_probs=102.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
.|++.|+.++|||-+.|.||||||||||+|+|+|+-+- .+|.|.+-. ...+-|+||.+.+.. -|.||.+.
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~--g~G~I~~P~-------~~~~lflpQ~PY~p~-GtLre~l~ 477 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW--GSGRISMPA-------DSALLFLPQRPYLPQ-GTLREALC 477 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc--CCCceecCC-------CCceEEecCCCCCCC-ccHHHHHh
Confidence 68999999999999999999999999999999999874 347776541 234778999887654 48888876
Q ss_pred HHH---------------HcCCc--------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-H
Q 048308 82 FIA---------------LFRLP--------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-L 125 (413)
Q Consensus 82 f~~---------------~~~~~--------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-l 125 (413)
+.. +++++ +||+++||.|+++|++++|||.|++||..+...++ +
T Consensus 478 YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~ 557 (604)
T COG4178 478 YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL 557 (604)
T ss_pred CCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH
Confidence 532 12221 28999999999999999999999999999999985 2
Q ss_pred hcC---C-cEEEecCcchHhHHH
Q 048308 126 NSE---G-NSLHVGKGDGVMSYF 144 (413)
Q Consensus 126 l~~---G-~~v~~G~~~~~~~~f 144 (413)
+.+ + .+|..|.+.....+.
T Consensus 558 l~~~lp~~tvISV~Hr~tl~~~h 580 (604)
T COG4178 558 LKEELPDATVISVGHRPTLWNFH 580 (604)
T ss_pred HHhhCCCCEEEEeccchhhHHHH
Confidence 222 3 466666665555554
No 378
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.5e-16 Score=156.60 Aligned_cols=154 Identities=27% Similarity=0.354 Sum_probs=118.6
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+..||.+++.||++-|+|.||||||||++.+.|+++| .+|+|.+||+|++. .+|+..+-|+-|-.+|+.+--.|
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 4579999999999999999999999999999999984 67999999999863 45665666776666665433222
Q ss_pred H------HHH-------HHHcCC-------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH------Hh
Q 048308 79 T------LVF-------IALFRL-------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL------LN 126 (413)
Q Consensus 79 ~------l~f-------~~~~~~-------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~------ll 126 (413)
+ +.+ +++..+ .+||+++-.||+.+-+++.+||=-+-.|+.-+..+. +-
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK 496 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK 496 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH
Confidence 2 222 221111 248999999999999999999999999999998772 34
Q ss_pred cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 127 SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 127 ~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
.+|++|+.-+.++ +|| .-||.++.+.+|+..+
T Consensus 497 ~qGKTI~aIsHDd--~YF-----------~~ADrll~~~~G~~~e 528 (546)
T COG4615 497 EQGKTIFAISHDD--HYF-----------IHADRLLEMRNGQLSE 528 (546)
T ss_pred HhCCeEEEEecCc--hhh-----------hhHHHHHHHhcCceee
Confidence 4799998854322 344 5699999999998764
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.64 E-value=1.9e-16 Score=147.38 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=82.1
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHh----CCCCCCCeeEEEEECCcccC-hhccccEEEEecCC-----ccCCCC
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLG----GRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSN-----VFYLHL 74 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~-----~~~~~l 74 (413)
..++.+.+| +++|+||||||||||+++|. |...+ ..|.+..+..... ...+..+++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 346677888 99999999999999999995 77653 2344431111111 22344688888887 444566
Q ss_pred CHHHHHHHHHHcC-----------C---chh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HH
Q 048308 75 TVTETLVFIALFR-----------L---PIK------RVSRAQELLINPSLLFLDEPASGLDSTIAK-QI 123 (413)
Q Consensus 75 Tv~e~l~f~~~~~-----------~---~~k------rvsia~~l~~~p~llllDEPtsgLD~~~~~-~i 123 (413)
|+.|++.+...-+ + ..| |+++|++++.+|+++++||||++||+.++. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l 161 (204)
T cd03240 92 AILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL 161 (204)
T ss_pred hHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH
Confidence 8888885532110 1 114 478999999999999999999999999988 66
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.63 E-value=4.9e-16 Score=145.37 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=81.1
Q ss_pred cceeEEe-cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC--cccC-hhccccEEEEecCCcc------CCCC
Q 048308 5 GIRGVSS-LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN--NPLS-RTVKRKTGFVAHSNVF------YLHL 74 (413)
Q Consensus 5 ~vs~~~~-~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~-~~~~~~~~~v~q~~~~------~~~l 74 (413)
++++... +|++++|+||||||||||+++|++.+- +...+....+. .... ...+..+++++|++.. .+.+
T Consensus 19 ~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 19 VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 3555433 588999999999999999999996432 12222222211 1111 1233457778777543 2345
Q ss_pred CHHHHHHH--------HHHcCC--------chhHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHH----
Q 048308 75 TVTETLVF--------IALFRL--------PIKRVSRAQELLI----------NPSLLFLDEPASGLDSTIAKQIL---- 124 (413)
Q Consensus 75 Tv~e~l~f--------~~~~~~--------~~krvsia~~l~~----------~p~llllDEPtsgLD~~~~~~i~---- 124 (413)
+..+.... ...+.. .+||+++|++|+. +|+++++||||+|||+.++..+.
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~ 177 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE 177 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 55544331 111111 1389999999985 67899999999999999998873
Q ss_pred -HhcCCcEEEe
Q 048308 125 -LNSEGNSLHV 134 (413)
Q Consensus 125 -ll~~G~~v~~ 134 (413)
+..+|.++..
T Consensus 178 ~~~~~~~tii~ 188 (213)
T cd03279 178 LIRTENRMVGV 188 (213)
T ss_pred HHHhCCCEEEE
Confidence 2234766655
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.59 E-value=5.6e-16 Score=143.64 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=75.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+++ .+|++++|+||||||||||+|+|+|... +...|.+... ..++.|.+.+++.+|+.|++.
T Consensus 16 v~n~i~l--~~g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l~ 81 (199)
T cd03283 16 VANDIDM--EKKNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDLR 81 (199)
T ss_pred ecceEEE--cCCcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchhccc
Confidence 3455544 5589999999999999999999988541 1112332211 125667788899999999997
Q ss_pred HHHHc-CCchhHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 FIALF-RLPIKRVSRAQELLI--NPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 f~~~~-~~~~krvsia~~l~~--~p~llllDEPtsgLD~~~~~~i 123 (413)
+.... +...+|+.-+.+.+. +|+++++|||++|+|+..+..+
T Consensus 82 ~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 82 DGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred cccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHH
Confidence 64321 111245555555566 9999999999999999988654
No 382
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=2.8e-16 Score=150.60 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=77.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc-cc-C-----hhccccEEEEecCC---------ccCCCCCH
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN-PL-S-----RTVKRKTGFVAHSN---------VFYLHLTV 76 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~-~-----~~~~~~~~~v~q~~---------~~~~~lTv 76 (413)
..+++|+||||||||||+++|++.+.+ ...|++...|. +. . ...+..+++++|++ ...+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 459999999999999999999998752 12356666554 21 0 11233577777763 11223333
Q ss_pred HHHH---------------------HHHHHcCCc----------------------------------hhHHHHHHHHh-
Q 048308 77 TETL---------------------VFIALFRLP----------------------------------IKRVSRAQELL- 100 (413)
Q Consensus 77 ~e~l---------------------~f~~~~~~~----------------------------------~krvsia~~l~- 100 (413)
.+++ .....++++ +||+++|++|+
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 3222 111122221 17999999998
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEe
Q 048308 101 ---INPSLLFLDEPASGLDSTIAKQIL----LNSEGNSLHV 134 (413)
Q Consensus 101 ---~~p~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~ 134 (413)
.+|+++++||||+|||..++..+. -+.+|.++-.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~ 224 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIV 224 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 578999999999999999998883 1235664433
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.54 E-value=8.2e-15 Score=149.25 Aligned_cols=122 Identities=24% Similarity=0.285 Sum_probs=75.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEE-----------------
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFV----------------- 64 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v----------------- 64 (413)
+++|+++++.+|+-.+|+|+|||||||+|++|+|+..|.+..=.++.-.++..+...+.+-++
T Consensus 90 l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~ 169 (614)
T KOG0927|consen 90 LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAED 169 (614)
T ss_pred eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998764433334333322211100001011
Q ss_pred --ec-CC-ccCCCCCHHHHHH------HHHH-------cC-Cc--------------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308 65 --AH-SN-VFYLHLTVTETLV------FIAL-------FR-LP--------------IKRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 65 --~q-~~-~~~~~lTv~e~l~------f~~~-------~~-~~--------------~krvsia~~l~~~p~llllDEPt 112 (413)
.+ ++ ..-...+..|-+. +.++ +. ++ +.|+++|++|..+|++|+|||||
T Consensus 170 l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPt 249 (614)
T KOG0927|consen 170 LAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPT 249 (614)
T ss_pred HHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCc
Confidence 11 11 0000000111110 0000 00 00 16999999999999999999999
Q ss_pred CCCCHHHHHHH
Q 048308 113 SGLDSTIAKQI 123 (413)
Q Consensus 113 sgLD~~~~~~i 123 (413)
+|||..+..-+
T Consensus 250 nhLDleA~~wL 260 (614)
T KOG0927|consen 250 NHLDLEAIVWL 260 (614)
T ss_pred cCCCHHHHHHH
Confidence 99999887655
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.53 E-value=3.4e-14 Score=142.27 Aligned_cols=105 Identities=29% Similarity=0.340 Sum_probs=82.6
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF 86 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~ 86 (413)
.|++..||+++++||||-||||+.++|+|.++| .+|+ . ..-+++|=||--.--...||++-|.-+...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~------~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----E------EDLKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----C------ccceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 467788999999999999999999999999885 4564 1 123477777754444678999988654332
Q ss_pred CC-----------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 87 RL-----------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 87 ~~-----------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+. ..|||+||.+|..++++.+||||++-||+..+..+
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 11 11999999999999999999999999999988665
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.51 E-value=6.1e-14 Score=142.01 Aligned_cols=158 Identities=23% Similarity=0.307 Sum_probs=124.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc----Ch--hccccEEEEecCC---ccCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL----SR--TVKRKTGFVAHSN---VFYL 72 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~----~~--~~~~~~~~v~q~~---~~~~ 72 (413)
.++|||++++.||+++|.|=+|-|-+.|+.+|+|..++ .+|+|.++|++. +. ..+..++|||+|. -+.+
T Consensus 273 ~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~ 350 (501)
T COG3845 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL 350 (501)
T ss_pred eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence 47899999999999999999999999999999999763 449999999985 22 2345689999886 4678
Q ss_pred CCCHHHHHHHHHHcCC-----------------------------------------chhHHHHHHHHhhCCCEEEEeCC
Q 048308 73 HLTVTETLVFIALFRL-----------------------------------------PIKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 73 ~lTv~e~l~f~~~~~~-----------------------------------------~~krvsia~~l~~~p~llllDEP 111 (413)
.+|+.||+.+...-+- +.||+-+||||..+|++|+..+|
T Consensus 351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP 430 (501)
T COG3845 351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430 (501)
T ss_pred CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence 9999999976543210 01899999999999999999999
Q ss_pred CCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308 112 ASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP 173 (413)
Q Consensus 112 tsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~ 173 (413)
|.|||..++..|. .-++|+-|..=+ .+..+..+.||.+..+.+|+..+..
T Consensus 431 TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS------------~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 431 TRGLDVGAIEFIHERLLELRDAGKAVLLIS------------EDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCEEEEEe------------hhHHHHHHhhheeeeeeCCceeccc
Confidence 9999999998872 334676655422 2334456779999998888776543
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.49 E-value=1.5e-13 Score=152.30 Aligned_cols=70 Identities=30% Similarity=0.493 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308 91 KRVSRAQELLINP---SLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162 (413)
Q Consensus 91 krvsia~~l~~~p---~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 162 (413)
||+.||++|+.+| ++++|||||+|||......++ +.++|++|..-+ |+.... ..||+++
T Consensus 837 QRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit------------H~~~~i-~~aD~ii 903 (943)
T PRK00349 837 QRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE------------HNLDVI-KTADWII 903 (943)
T ss_pred HHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe------------cCHHHH-HhCCEEE
Confidence 8999999999999 999999999999999998883 334687766532 222222 2488888
Q ss_pred Hh------hCCccCCCC
Q 048308 163 DL------ANGVVSGDP 173 (413)
Q Consensus 163 ~~------~~~~~~~~~ 173 (413)
++ ..|++...+
T Consensus 904 ~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 904 DLGPEGGDGGGEIVATG 920 (943)
T ss_pred EecCCcCCCCCEEEEeC
Confidence 88 567665433
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.49 E-value=3.6e-14 Score=144.63 Aligned_cols=124 Identities=28% Similarity=0.365 Sum_probs=87.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecC--CccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHS--NVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~--~~~~~~lTv~e~ 79 (413)
+.++++|-+.+++-++++||||+|||||||++.|.+++ ..|.|.-.-+. ++++..|+ +.+--+.++-|+
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~-------~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN-------KLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-------cchhhhhhhHhhcCcchhHHHH
Confidence 56788999999999999999999999999999999874 66877543221 22333332 222224445555
Q ss_pred HHHH--------------HHcCC---------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc-
Q 048308 80 LVFI--------------ALFRL---------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS- 127 (413)
Q Consensus 80 l~f~--------------~~~~~---------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~- 127 (413)
+.=. .++++ .++||.+|+.++..|.+|+|||||+|||..+...+- +..
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence 4321 11222 127999999999999999999999999999988773 222
Q ss_pred CCcEEEe
Q 048308 128 EGNSLHV 134 (413)
Q Consensus 128 ~G~~v~~ 134 (413)
.|-+|.-
T Consensus 556 ~Ggvv~v 562 (614)
T KOG0927|consen 556 PGGVVLV 562 (614)
T ss_pred CCceeee
Confidence 4655543
No 388
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.47 E-value=2.2e-13 Score=157.50 Aligned_cols=33 Identities=42% Similarity=0.662 Sum_probs=31.3
Q ss_pred hHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHH
Q 048308 91 KRVSRAQELL---INPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 91 krvsia~~l~---~~p~llllDEPtsgLD~~~~~~i 123 (413)
||+.||++|+ .+|++++|||||+|||..+..++
T Consensus 816 QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L 851 (1809)
T PRK00635 816 QRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL 851 (1809)
T ss_pred HHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 8999999998 69999999999999999999887
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.1e-14 Score=144.35 Aligned_cols=122 Identities=24% Similarity=0.343 Sum_probs=75.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR-LSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|++-++++..|.-.+|+|+||+|||||||+|+.- ...-+++-++.=+..+.. +.-....-++.++..+...++-
T Consensus 95 LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l 174 (582)
T KOG0062|consen 95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTL 174 (582)
T ss_pred hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchH
Confidence 68889999999999999999999999999999861 110011111111111100 0000012234444444333343
Q ss_pred HHHHH-HHHHcCC-------c--------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLV-FIALFRL-------P--------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~-f~~~~~~-------~--------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.|.-. ..+-++. | +-|+++||||..+|++|+|||||+.||..+..=+
T Consensus 175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL 237 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL 237 (582)
T ss_pred HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH
Confidence 43322 1111211 1 1599999999999999999999999999887655
No 390
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.43 E-value=4.9e-13 Score=123.91 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=71.9
Q ss_pred ccceeEEecCc-EEEEECCCCCCHHHHHHHHh--------CCCCCCCeeEEEEECCcccChhccccEEEEecCCccCC-C
Q 048308 4 KGIRGVSSLGE-LLAILGPSGRGKTTLPTTLG--------GRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL-H 73 (413)
Q Consensus 4 ~~vs~~~~~Ge-~~~ilG~sGsGKSTLl~~l~--------g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~-~ 73 (413)
.++|+++.+|+ +++|.||||||||||+|+|+ |..-+ .... ..++|+.|.-..+. .
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~~-------------~~~~~~~~~~~~lg~~ 82 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAEG-------------SSLPVFENIFADIGDE 82 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--cccc-------------ccCcCccEEEEecCch
Confidence 47899999995 89999999999999999998 43321 1110 12333333322111 1
Q ss_pred CCHHHHH-HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH------HhcCCcEEEecC
Q 048308 74 LTVTETL-VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL------LNSEGNSLHVGK 136 (413)
Q Consensus 74 lTv~e~l-~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~------ll~~G~~v~~G~ 136 (413)
.++.+.+ .|+..+ +|+..++++ +.+|+++++|||++|||+..+..+. +..+|.++..-+
T Consensus 83 ~~l~~~~s~fs~g~---~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~t 148 (200)
T cd03280 83 QSIEQSLSTFSSHM---KNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATT 148 (200)
T ss_pred hhhhcCcchHHHHH---HHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 1222222 233322 267777755 5899999999999999999887662 223466555544
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=9.4e-13 Score=145.77 Aligned_cols=68 Identities=31% Similarity=0.530 Sum_probs=50.4
Q ss_pred hHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308 91 KRVSRAQELLI---NPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162 (413)
Q Consensus 91 krvsia~~l~~---~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 162 (413)
||+.||++|+. +|++++|||||+|||...+..++ +.++|+++..-+ |+.... ..||+++
T Consensus 835 QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~------------H~~~~i-~~aD~ii 901 (924)
T TIGR00630 835 QRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE------------HNLDVI-KTADYII 901 (924)
T ss_pred HHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe------------CCHHHH-HhCCEEE
Confidence 89999999997 59999999999999999998883 334687765532 332222 2488888
Q ss_pred Hh------hCCccCC
Q 048308 163 DL------ANGVVSG 171 (413)
Q Consensus 163 ~~------~~~~~~~ 171 (413)
++ ..|++..
T Consensus 902 ~Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 902 DLGPEGGDGGGTIVA 916 (924)
T ss_pred EecCCccCCCCEEEE
Confidence 88 5666543
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.42 E-value=8.1e-13 Score=135.76 Aligned_cols=134 Identities=22% Similarity=0.330 Sum_probs=97.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+.|+.|+-+.|+||||||||+|+|+++|+-+ ..+|.+..-.+... +.+-|+||.+... .-|.||-+-
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~~~----~~lfflPQrPYmt-~GTLRdQvI 522 (659)
T KOG0060|consen 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDGGP----KDLFFLPQRPYMT-LGTLRDQVI 522 (659)
T ss_pred eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccCCC----CceEEecCCCCcc-ccchhheee
Confidence 5788999999999999999999999999999999976 35677765433211 3477888876543 336666655
Q ss_pred HHH--------------------HcCC----------c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 82 FIA--------------------LFRL----------P---------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 82 f~~--------------------~~~~----------~---------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
|.. ..++ . .||++.||-+.++|++-+|||.||++|
T Consensus 523 YP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~ 602 (659)
T KOG0060|consen 523 YPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT 602 (659)
T ss_pred ccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhcc
Confidence 431 1111 0 189999999999999999999999999
Q ss_pred HHHHHHHH--HhcCCcE-EEecCcchHhH
Q 048308 117 STIAKQIL--LNSEGNS-LHVGKGDGVMS 142 (413)
Q Consensus 117 ~~~~~~i~--ll~~G~~-v~~G~~~~~~~ 142 (413)
......+. +-+.|-+ +-.|.+.....
T Consensus 603 ~dvE~~~Yr~~r~~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 603 EDVEGALYRKCREMGITFISVGHRKSLWK 631 (659)
T ss_pred HHHHHHHHHHHHHcCCeEEEeccHHHHHh
Confidence 98887774 3334644 33444444433
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.42 E-value=1.2e-13 Score=126.13 Aligned_cols=124 Identities=20% Similarity=0.311 Sum_probs=86.8
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-Ce-eEEEEECCccc---Ch-hc----cccEEEEecCCcc
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ET-RGNIDYNNNPL---SR-TV----KRKTGFVAHSNVF 70 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~-~G~i~~~g~~~---~~-~~----~~~~~~v~q~~~~ 70 (413)
++++++|+++.+||+-+++|.||||||-..|+|+|..+.. .+ .....+++.++ ++ .. .+.++.++|++.-
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 3678999999999999999999999999999999987532 11 12334444432 22 22 2356788998743
Q ss_pred --CCCCCHHHHHH---------------H----------HHHcCCc-----------------hhHHHHHHHHhhCCCEE
Q 048308 71 --YLHLTVTETLV---------------F----------IALFRLP-----------------IKRVSRAQELLINPSLL 106 (413)
Q Consensus 71 --~~~lTv~e~l~---------------f----------~~~~~~~-----------------~krvsia~~l~~~p~ll 106 (413)
-|.-+|...|- | ..+.+.. -|+|.||.|++..|++|
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence 33333332221 1 1111111 07899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHH
Q 048308 107 FLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 107 llDEPtsgLD~~~~~~i~ 124 (413)
+.||||+.+|+.++.++.
T Consensus 181 IADEPTN~~e~~Tq~Qif 198 (330)
T COG4170 181 IADEPTNSMEPTTQAQIF 198 (330)
T ss_pred eccCCCcccCccHHHHHH
Confidence 999999999999999984
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.41 E-value=8.3e-13 Score=122.35 Aligned_cols=118 Identities=15% Similarity=0.046 Sum_probs=71.6
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCC-CCC-
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYL-HLT- 75 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~-~lT- 75 (413)
++++++.+.+| +.+|+||||||||||+.+|...+.. ...+ ...|.... ......+..++|+....+ ..+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~-~~~~--~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG-KASD--TNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV 87 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC-Cccc--ccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence 35677778887 8899999999999999999743221 1000 00011100 011223556666543332 122
Q ss_pred -----HHHHHHHHHHcCC--------chhHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 76 -----VTETLVFIALFRL--------PIKRVSRAQEL----LINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 76 -----v~e~l~f~~~~~~--------~~krvsia~~l----~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
++|-+........ .+||++||+++ +.+|++++|||||+|||..++..+.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 88 LSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred HHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 2222322100000 12799999999 5899999999999999999998773
No 395
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.39 E-value=3.4e-13 Score=112.15 Aligned_cols=71 Identities=20% Similarity=0.118 Sum_probs=58.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+++++.+++||+++|+||||||||||++++. +|++.++|.+... ...+..++++|+ ....|++
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~ 72 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLR 72 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHH
Confidence 689999999999999999999999999999986 4789999987632 344556777776 3356999
Q ss_pred HHHHHH
Q 048308 78 ETLVFI 83 (413)
Q Consensus 78 e~l~f~ 83 (413)
|||.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999763
No 396
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=4.8e-13 Score=124.47 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=72.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+.+|+++..++|++++|+||||+||||+++++++..--.. -|. .+...... ....+.......++. +.+.+
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~-~G~-~vpa~~~~l~~~d~I~~~~~~~d~------~~~~~ 89 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQ-IGC-FVPAEYATLPIFNRLLSRLSNDDS------MERNL 89 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHH-cCC-CcchhhcCccChhheeEecCCccc------cchhh
Confidence 5789999999999999999999999999999986531000 010 00000000 000111111111111 11111
Q ss_pred -HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH------HHhcCCcEEEecC
Q 048308 81 -VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI------LLNSEGNSLHVGK 136 (413)
Q Consensus 81 -~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i------~ll~~G~~v~~G~ 136 (413)
.|+.. .+|++.+.+++++|+++++|||++|+|+.....+ .+.+.|..+..-+
T Consensus 90 S~fs~e----~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~T 148 (204)
T cd03282 90 STFASE----MSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFAT 148 (204)
T ss_pred hHHHHH----HHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 12222 2566777788899999999999999999765544 2444566555543
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.37 E-value=8.9e-13 Score=122.31 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=65.0
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH-
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA- 84 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~- 84 (413)
.++++.+|++++|+||||||||||+++|++..-. ...|.... ..+..+++..|.. ..++..+++....
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~~~-------~~~~~i~~~dqi~---~~~~~~d~i~~~~s 90 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCFVP-------AESASIPLVDRIF---TRIGAEDSISDGRS 90 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCCcc-------ccccccCCcCEEE---EEecCcccccCCce
Confidence 4677889999999999999999999999843210 01121110 0111233322221 1122222221000
Q ss_pred HcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 85 LFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 85 ~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.+....++++.+.+++.+|+++++||||+|+|+.....+
T Consensus 91 ~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 91 TFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred eHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 001123778888888999999999999999999877655
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.36 E-value=2.4e-12 Score=120.65 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=73.7
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-----------------CCeeEEE--EECCcccChhccccEEEE
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-----------------GETRGNI--DYNNNPLSRTVKRKTGFV 64 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-----------------~~~~G~i--~~~g~~~~~~~~~~~~~v 64 (413)
+++.+.+.+| +.+|+|+|||||||||++|.-.+.. +..++.| .+++.......++..-++
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~ 93 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL 93 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence 3445555554 8899999999999999998543210 1112222 222222122334444577
Q ss_pred ecCCc-cCCCCCHHHHHHHHHHc--C---C--------chhHHHHHHH----HhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 65 AHSNV-FYLHLTVTETLVFIALF--R---L--------PIKRVSRAQE----LLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 65 ~q~~~-~~~~lTv~e~l~f~~~~--~---~--------~~krvsia~~----l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.|++. -+..++++|.+. .... + . .+||+.++.+ ++.+|+++++||||+|||+.++..+.
T Consensus 94 ~q~~~~~~~~~~~~e~l~-~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~ 170 (213)
T cd03277 94 PQDRVGEFAKLSPIELLV-KFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF 170 (213)
T ss_pred chHHHHHHHhCChHhHhe-eeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH
Confidence 77764 367888888772 1100 0 0 1155555433 35899999999999999999999883
No 399
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.33 E-value=4.5e-12 Score=115.61 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=101.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---------------hhccccEEEEec
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---------------RTVKRKTGFVAH 66 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------------~~~~~~~~~v~q 66 (413)
+.-|+|+.++.|.-+.++|.||||||||||+|+|..-.+. |-|.++|+..- ..+.+..+.-.
T Consensus 29 ~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag- 105 (291)
T KOG2355|consen 29 IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG- 105 (291)
T ss_pred eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCcCccccccccccCceeEecccccccccccc-
Confidence 5678999999999999999999999999999999754222 78888887531 11222222221
Q ss_pred CCccCCCCCHHHHHHHHHH-------------c------C------CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 67 SNVFYLHLTVTETLVFIAL-------------F------R------LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 67 ~~~~~~~lTv~e~l~f~~~-------------~------~------~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
+-.+...+++.+.+ |+.. + | ..++||.|+.-|+..-++|+|||-|--||.-++.
T Consensus 106 evplq~D~sae~mi-fgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARa 184 (291)
T KOG2355|consen 106 EVPLQGDISAEHMI-FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARA 184 (291)
T ss_pred cccccccccHHHHH-hhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHH
Confidence 22233456666554 3210 0 1 1238999999999999999999999999999998
Q ss_pred HHH-Hhc-----CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 122 QIL-LNS-----EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 122 ~i~-ll~-----~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+++ +++ .|.+|-+.+ +.|.- -..=+.++..+.+|+..+
T Consensus 185 dLLeFlkeEce~RgatIVYAT-----HIFDG-------Le~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 185 DLLEFLKEECEQRGATIVYAT-----HIFDG-------LETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHHhhcCcEEEEEe-----eeccc-------hhhcchhEEEecCCeeee
Confidence 875 332 254443322 22321 123345666777776654
No 400
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.33 E-value=5.4e-12 Score=120.73 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 91 KRVSRAQELLIN----PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 91 krvsia~~l~~~----p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
+|++||++++.+ |+++++||||+|||..++..+. +..+|.++..
T Consensus 162 ~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~ 214 (247)
T cd03275 162 TMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIV 214 (247)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEE
Confidence 799999999875 8999999999999999998773 2234665555
No 401
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.2e-11 Score=123.42 Aligned_cols=111 Identities=31% Similarity=0.430 Sum_probs=83.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC--ccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN--VFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~ 79 (413)
+.++++|-|.--.-+||+||||.||||||+.|.|.+.| ..|+..-| .+-.+|+..|+. .+-..-|.-|.
T Consensus 602 LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp~Ey 672 (807)
T KOG0066|consen 602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-------HRLRIGWFDQHANEALNGEETPVEY 672 (807)
T ss_pred hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-------ceeeeechhhhhHHhhccccCHHHH
Confidence 34667777777788999999999999999999999874 55665433 233578777763 44455566666
Q ss_pred HHHHHHcCCc-----------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALFRLP-----------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~~~~-----------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|.-. +.+| +-||.+|.--+..|++|||||||++||..+...+
T Consensus 673 Lqr~--FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDAL 743 (807)
T KOG0066|consen 673 LQRK--FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDAL 743 (807)
T ss_pred HHHh--cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHH
Confidence 6421 1111 1599999888899999999999999999988776
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.26 E-value=1.9e-11 Score=111.46 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=65.3
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C--CeeEEE-E-ECCcccChhccccEEEEecCC-ccCCCCCHHH
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G--ETRGNI-D-YNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTE 78 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~--~~~G~i-~-~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e 78 (413)
......++.+.+|+||||||||+++.+|.=.... . ...... . .+...... ....+....+.. .++|+-+..|
T Consensus 15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~f~~~~~~~~~~~~~~ 93 (178)
T cd03239 15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGI-NSASVEITFDKSYFLVLQGKVEQ 93 (178)
T ss_pred CEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCC-ceEEEEEEEECceEEecCCcCcc
Confidence 3444444449999999999999999998433211 0 111111 1 11111111 011122222222 2233333333
Q ss_pred HHHHHHHcCCchhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFRLPIKRVSRAQELL----INPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~~~~krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i 123 (413)
.+. ...++|+++|++++ .+|+++++|||++|||...+..+
T Consensus 94 ~LS-----~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i 137 (178)
T cd03239 94 ILS-----GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRV 137 (178)
T ss_pred cCC-----HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHH
Confidence 321 11248999999996 69999999999999999999877
No 403
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=1.5e-11 Score=115.34 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=66.5
Q ss_pred eeEEecC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCcc-CCCCCHHHHHH-H
Q 048308 7 RGVSSLG--ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVF-YLHLTVTETLV-F 82 (413)
Q Consensus 7 s~~~~~G--e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~-~~~lTv~e~l~-f 82 (413)
+..+.++ ..++|.||||+|||||||.++....- ...|...... .-.++|..|.... -...++.+.+. |
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~~S~f 92 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSGQSAF 92 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhccchH
Confidence 3444454 79999999999999999999742100 1124332211 1224555554322 22334555442 2
Q ss_pred HHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 83 IALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 83 ~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
... .+|++++++++.+|+++++|||++|+|+....
T Consensus 93 ~~e----l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 93 MID----LYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred HHH----HHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 222 38999999999999999999999999986543
No 404
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.25 E-value=4.4e-12 Score=119.10 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=71.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+.+|+++..++ ++++|.|||||||||+||++++..-. +. .|.... ..+..++++.| +++.+++.|++.
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp-~~~~~i~~~~~---i~~~~~~~~~ls 87 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVP-ASKAEIGVVDR---IFTRIGASDDLA 87 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeec-cccceecceee---EeccCCchhhhc
Confidence 56788888887 99999999999999999999864311 11 112111 12345666654 568899999996
Q ss_pred HHHHcCCchhHHHHHHH--HhhCCCEEEEeCC---CCCCCHHHH
Q 048308 82 FIALFRLPIKRVSRAQE--LLINPSLLFLDEP---ASGLDSTIA 120 (413)
Q Consensus 82 f~~~~~~~~krvsia~~--l~~~p~llllDEP---tsgLD~~~~ 120 (413)
...... -..+..++.. .+.+|+++++||| |+++|....
T Consensus 88 ~g~s~f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 88 GGRSTF-MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred cCcchH-HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 432110 1123344444 4579999999999 999998653
No 405
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.19 E-value=4e-11 Score=116.04 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=77.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCCHHHHHHHHHHcCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL 88 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~ 88 (413)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. ......+++++|.+. .+.++|.|+..-+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k~~~--- 185 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPKAEG--- 185 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchHHHH---
Confidence 5789999999999999999999987 46799999998763 133345778898764 467788887543221
Q ss_pred chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcEEEecCc
Q 048308 89 PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKG 137 (413)
Q Consensus 89 ~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~v~~G~~ 137 (413)
-.......+|+++++|||++.-+.....+ .+.+|.++..-..
T Consensus 186 -----~~~~i~~~~P~villDE~~~~e~~~~l~~--~~~~G~~vI~ttH 227 (270)
T TIGR02858 186 -----MMMLIRSMSPDVIVVDEIGREEDVEALLE--ALHAGVSIIATAH 227 (270)
T ss_pred -----HHHHHHhCCCCEEEEeCCCcHHHHHHHHH--HHhCCCEEEEEec
Confidence 12223336999999999986533322222 2346877666543
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.19 E-value=2.5e-11 Score=120.62 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=82.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC------CCeeEEEEECCcccChhccccEEEEecC-CccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST------GETRGNIDYNNNPLSRTVKRKTGFVAHS-NVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~~~~~~~~v~q~-~~~~~~l 74 (413)
+|+|+|++++||++++|+|+|||||||+|++|.|.... .+.+|.|.+--+.. .+.++-+ +.-+...
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------~a~iPge~Ep~f~~~ 470 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------SALIPGEYEPEFGEV 470 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------hhccCcccccccCch
Confidence 68999999999999999999999999999999997431 14567666543221 2223322 1223334
Q ss_pred CHHHHHH-----------HHHHcCC----------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 75 TVTETLV-----------FIALFRL----------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 75 Tv~e~l~-----------f~~~~~~----------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|+.|.+. .....++ .++|..||..+..+|.+++.||--+.||..|+..+
T Consensus 471 tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rV 546 (593)
T COG2401 471 TILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRV 546 (593)
T ss_pred hHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHH
Confidence 4444432 1111111 13799999999999999999999999999999888
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.18 E-value=2.6e-11 Score=121.75 Aligned_cols=113 Identities=28% Similarity=0.388 Sum_probs=76.9
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEE-----E--EECCcccChhcc----------ccEEEEecCCcc
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGN-----I--DYNNNPLSRTVK----------RKTGFVAHSNVF 70 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~-----i--~~~g~~~~~~~~----------~~~~~v~q~~~~ 70 (413)
.+||++++|+|+||-||||-+|+|+|.+.|. ..++. | .+-|..+...++ .+..||.--+..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4899999999999999999999999998763 22221 1 122322211111 123344433333
Q ss_pred CCCCCHHHHHHHHHH----------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 71 YLHLTVTETLVFIAL----------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 71 ~~~lTv~e~l~f~~~----------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+. -||+|-|.-... +.+ ..||++||.+++.+++++++|||||-||...+.++
T Consensus 177 ~K-G~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 177 VK-GKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred hc-chHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHH
Confidence 33 388888764321 111 12999999999999999999999999999888766
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.17 E-value=2.3e-11 Score=109.04 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=60.5
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR 87 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~ 87 (413)
..+.++.++.|+|||||||||+++++....- ..+|.+..... . +.-.++++....+ +..... ...
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~--~~~~~~~~~~~-~-----~~g~~~~~~~~~~----i~~~~~---lS~ 80 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALG--GAQSATRRRSG-V-----KAGCIVAAVSAEL----IFTRLQ---LSG 80 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHH--hcchhhhccCc-c-----cCCCcceeeEEEE----ehheee---ccc
Confidence 3444556999999999999999999865431 11121111100 0 0011122221111 000000 111
Q ss_pred CchhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHH
Q 048308 88 LPIKRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 88 ~~~krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i 123 (413)
...+|+++|++|.. +|+++++|||++|+|+.....+
T Consensus 81 G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 81 GEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred cHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 13489999999987 7899999999999999998877
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.17 E-value=1.8e-11 Score=115.49 Aligned_cols=121 Identities=17% Similarity=0.094 Sum_probs=69.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+.+|+++..++|++++|.||||+|||||++.++-..- -.-.|. .+...... ....+....+..+|... +.+
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-la~~g~-~vpa~~~~~~~~~~il~~~~l~d~~~------~~l 90 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL-MAQIGC-FVPCDSADIPIVDCILARVGASDSQL------KGV 90 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH-HHHhCC-CcCcccEEEeccceeEeeeccccchh------cCc
Confidence 5789999999999999999999999999999862100 000110 00000000 00011111111111110 111
Q ss_pred HHHHHcCCchhHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHH---Hhc-CCcEEEec
Q 048308 81 VFIALFRLPIKRVSRAQEL--LINPSLLFLDEP---ASGLDSTIAKQIL---LNS-EGNSLHVG 135 (413)
Q Consensus 81 ~f~~~~~~~~krvsia~~l--~~~p~llllDEP---tsgLD~~~~~~i~---ll~-~G~~v~~G 135 (413)
-....+++.+++.+ +.+|++++|||| |++||.......+ +.. .|..+..-
T Consensus 91 -----S~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlis 149 (222)
T cd03285 91 -----STFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFA 149 (222)
T ss_pred -----ChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 01123677777777 899999999999 9999998876543 333 35555443
No 410
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=4e-10 Score=109.62 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=34.8
Q ss_pred hHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEe
Q 048308 91 KRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQIL----LNSEGNSLHV 134 (413)
Q Consensus 91 krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~ 134 (413)
+|+.+|++++. +|+++++||||+|||+.++..+. -+.+|.++..
T Consensus 177 ~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~ 228 (276)
T cd03241 177 SRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLC 228 (276)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 79999987654 99999999999999999998873 1234555544
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.11 E-value=9.4e-11 Score=124.76 Aligned_cols=62 Identities=35% Similarity=0.578 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308 91 KRVSRAQELLINP---SLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162 (413)
Q Consensus 91 krvsia~~l~~~p---~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 162 (413)
||+.+|.+|..+. .+++|||||+||-..-..+++ |.++|++|.. +.|.... ...|||++
T Consensus 829 QRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViV------------IEHNLdV-Ik~AD~II 895 (935)
T COG0178 829 QRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV------------IEHNLDV-IKTADWII 895 (935)
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE------------Eecccce-EeecCEEE
Confidence 9999999999877 999999999999998888774 6678988766 3344433 46699999
Q ss_pred Hhh
Q 048308 163 DLA 165 (413)
Q Consensus 163 ~~~ 165 (413)
|+-
T Consensus 896 DLG 898 (935)
T COG0178 896 DLG 898 (935)
T ss_pred EcC
Confidence 985
No 412
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.09 E-value=1.5e-09 Score=100.68 Aligned_cols=135 Identities=15% Similarity=0.002 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------LIKPQSIRLAIGAVLMKQKVASTITATIVL 338 (413)
Q Consensus 268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~ 338 (413)
-+.+.++++|.+..++..++..+++..+.||+.|++++... .++..++|.++++++++...+..+ +.+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~--~~~~ 134 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRFLAL--VLLV 134 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH--HHHH
Confidence 34457899999999999999999999999999999875221 345677888999999876544433 2222
Q ss_pred HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308 339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGR 410 (413)
Q Consensus 339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 410 (413)
+.+ .+.+|+|++|+.+++|.+|+.+++-...+++. ..+.|.++++++++.+++.++++...|+.+|
T Consensus 135 ~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------~~~~~~~~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 135 LQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------DGTLWQAVAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 222 58999999999999999999999987777641 2356889999999999999999998887664
No 413
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=4.1e-10 Score=106.13 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=68.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR-LSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+.+|+++.+++|++++|.||||+||||+++++++. +. ...|...... ... ..+.+....+...|.+...++
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l--a~~G~~v~a~-~~~~~~~~~i~~~~~~~d~~~~~~S---- 92 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM--AQIGSFVPAS-SATLSIFDSVLTRMGASDSIQHGMS---- 92 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH--HhCCCEEEcC-ceEEeccceEEEEecCccccccccc----
Confidence 56899999999999999999999999999999983 22 2335443321 111 112222233333333322222
Q ss_pred HHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 80 LVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 80 l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
.|...+ +|++-...-+++++++++|||.+|.|+.....
T Consensus 93 -tF~~e~----~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 93 -TFMVEL----SETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred -hHHHHH----HHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 233322 55655556678999999999988877555444
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1e-09 Score=106.52 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=30.9
Q ss_pred hHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 91 KRVSRAQELL---------INPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 91 krvsia~~l~---------~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
|++.+|++|+ .+|+++++||||++||+..+..+.
T Consensus 190 ~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~ 232 (270)
T cd03242 190 RTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL 232 (270)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH
Confidence 7899998875 799999999999999999999885
No 415
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.07 E-value=2e-10 Score=117.06 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=81.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
++..+++.++||--+.|.||||||||+|+++|+|+-+ + ++|.-..+ ....+-|+||.+..- --|.||-+-
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---v-----y~g~L~~P-~~~~mFYIPQRPYms-~gtlRDQII 566 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---V-----YNGLLSIP-RPNNIFYIPQRPYMS-GGTLRDQII 566 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---c-----cCCeeecC-CCcceEeccCCCccC-cCcccceee
Confidence 4678999999999999999999999999999999975 2 33332212 123477888875433 223333322
Q ss_pred HH----------------------------HHc---------------CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 82 FI----------------------------ALF---------------RLPIKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 82 f~----------------------------~~~---------------~~~~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+. ++. +..+||+.+||.+-++|+.-+|||-||+....
T Consensus 567 YPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsid 646 (728)
T KOG0064|consen 567 YPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSID 646 (728)
T ss_pred cCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccc
Confidence 11 000 01138999999999999999999999998877
Q ss_pred HHHHHHHh
Q 048308 119 IAKQILLN 126 (413)
Q Consensus 119 ~~~~i~ll 126 (413)
....+.-.
T Consensus 647 vE~~i~~~ 654 (728)
T KOG0064|consen 647 VEGKIFQA 654 (728)
T ss_pred hHHHHHHH
Confidence 77777533
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.04 E-value=3.7e-10 Score=131.11 Aligned_cols=63 Identities=29% Similarity=0.481 Sum_probs=50.1
Q ss_pred hHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308 91 KRVSRAQELLIN---PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162 (413)
Q Consensus 91 krvsia~~l~~~---p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 162 (413)
||+.+|.+|..+ +.+++|||||+||+.....+++ +.+.|++|..= .|+... ...|||++
T Consensus 1706 qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi------------eH~~~~-i~~aD~ii 1772 (1809)
T PRK00635 1706 IAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI------------DHDPAL-LKQADYLI 1772 (1809)
T ss_pred HHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHH-HHhCCEEE
Confidence 899999999876 7899999999999999999885 55789887663 233222 34499999
Q ss_pred HhhC
Q 048308 163 DLAN 166 (413)
Q Consensus 163 ~~~~ 166 (413)
|+-.
T Consensus 1773 dlgp 1776 (1809)
T PRK00635 1773 EMGP 1776 (1809)
T ss_pred EcCC
Confidence 9864
No 417
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.01 E-value=2.5e-09 Score=99.74 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHH
Q 048308 91 KRVSRAQELLINPSLLFLDEPA-----SGLDSTIAKQIL 124 (413)
Q Consensus 91 krvsia~~l~~~p~llllDEPt-----sgLD~~~~~~i~ 124 (413)
.++.||++++.+|+++++|||| +|||+.++..+.
T Consensus 159 ~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~ 197 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAE 197 (215)
T ss_pred HHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHH
Confidence 5789999999999999999999 999999999884
No 418
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=98.98 E-value=6.3e-11 Score=108.51 Aligned_cols=104 Identities=18% Similarity=0.383 Sum_probs=92.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCC-hHH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048308 267 NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKST-TPW--------LIKPQSIRLAIGAVLMKQKVASTITATIV 337 (413)
Q Consensus 267 ~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~-~~~--------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~ 337 (413)
.|++.+|.+|+.+.+++..++..+++.++.|++.|++.+ ... .+++.++|.++++++++.+.++.+.+++.
T Consensus 90 ~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (210)
T PF01061_consen 90 LYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLIL 169 (210)
T ss_pred cccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhhhhhhhhhcc
Confidence 689999999999999999999999999999999999987 211 34677899999999999999999999887
Q ss_pred HHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhc
Q 048308 338 LQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQY 370 (413)
Q Consensus 338 ~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef 370 (413)
.+++ .+.+|+|++|+.|+||++|++|++..++|
T Consensus 170 ~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 170 LLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred cccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7754 58899999999999999999999999886
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.93 E-value=1.6e-09 Score=99.26 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=50.0
Q ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCCeeEEEEECCcccChhccccEEEEecCCccCC-CCCHHHHH-HHHHHcCCchh
Q 048308 15 LLAILGPSGRGKTTLPTTLGG-RLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL-HLTVTETL-VFIALFRLPIK 91 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~-~lTv~e~l-~f~~~~~~~~k 91 (413)
+++|.||||+||||++|.++- ... ...|..... . +-.++++.+.-..+. .-+..+.+ .|+.. .+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l--a~~G~~v~a-~------~~~~~~~d~il~~~~~~d~~~~~~s~fs~~----~~ 67 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM--AQIGSFVPA-E------SAELPVFDRIFTRIGASDSLAQGLSTFMVE----MK 67 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH--HHhCCCeee-h------heEecccceEEEEeCCCCchhccccHHHHH----HH
Confidence 468999999999999999972 221 011221110 0 011222221111111 00111111 12222 13
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHH
Q 048308 92 RVSRAQELL--INPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 92 rvsia~~l~--~~p~llllDEPtsgLD~~~~~~i 123 (413)
| +++.+. .+|+++++|||++|+|+.....+
T Consensus 68 ~--l~~~l~~~~~~~llllDEp~~g~d~~~~~~~ 99 (185)
T smart00534 68 E--TANILKNATENSLVLLDELGRGTSTYDGVAI 99 (185)
T ss_pred H--HHHHHHhCCCCeEEEEecCCCCCCHHHHHHH
Confidence 3 444554 49999999999999999877665
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.91 E-value=2.2e-09 Score=117.79 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=65.9
Q ss_pred ceeEEecC-cEEEEECCCCCCHHHHHHHHhCC-CCCCCeeE-EEEECCcccChhccccEEEEecCCccC-CCCCHHHHH-
Q 048308 6 IRGVSSLG-ELLAILGPSGRGKTTLPTTLGGR-LSTGETRG-NIDYNNNPLSRTVKRKTGFVAHSNVFY-LHLTVTETL- 80 (413)
Q Consensus 6 vs~~~~~G-e~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G-~i~~~g~~~~~~~~~~~~~v~q~~~~~-~~lTv~e~l- 80 (413)
+|+.+.+| ++++|.||||+|||||||+|+|. +. ...| .|-.+ ....++|+.|....+ +..++.+++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~--aq~G~~Vpa~-------~~~~~~~~d~i~~~i~~~~si~~~LS 384 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM--FQSGIPIPAN-------EHSEIPYFEEIFADIGDEQSIEQNLS 384 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH--HHhCCCccCC-------ccccccchhheeeecChHhHHhhhhh
Confidence 68888877 99999999999999999999987 22 1123 11111 011233333322111 123444444
Q ss_pred HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.|+..++ ++..+++.+ .+|+++++|||++|+|+.....+
T Consensus 385 tfS~~m~---~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~al 423 (771)
T TIGR01069 385 TFSGHMK---NISAILSKT-TENSLVLFDELGAGTDPDEGSAL 423 (771)
T ss_pred HHHHHHH---HHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHH
Confidence 2333332 445555444 79999999999999999988777
No 421
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.1e-09 Score=107.56 Aligned_cols=118 Identities=25% Similarity=0.335 Sum_probs=72.2
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC---CC----CeeEEEEECCcccC----hhccccEEEEecCC---
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS---TG----ETRGNIDYNNNPLS----RTVKRKTGFVAHSN--- 68 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~---~~----~~~G~i~~~g~~~~----~~~~~~~~~v~q~~--- 68 (413)
..|-|++|-.|.-.+++||||-||||||+.|+.|-- +. .++-+|..+..+.- +.-.+.......++
T Consensus 280 FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~ 359 (807)
T KOG0066|consen 280 FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLM 359 (807)
T ss_pred eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999988732 11 12233333332210 00011111111111
Q ss_pred --ccCCCCCHHHHHHHHH-H-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308 69 --VFYLHLTVTETLVFIA-L-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 69 --~~~~~lTv~e~l~f~~-~-------------------~~~~---------------~krvsia~~l~~~p~llllDEP 111 (413)
.--...|+-|.|.=.+ . ++.+ +-|||+||+|...|.+|+||||
T Consensus 360 ~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEP 439 (807)
T KOG0066|consen 360 SQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEP 439 (807)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCC
Confidence 1113455555553110 0 1111 0499999999999999999999
Q ss_pred CCCCCHHHH
Q 048308 112 ASGLDSTIA 120 (413)
Q Consensus 112 tsgLD~~~~ 120 (413)
|+.||-...
T Consensus 440 TNHLDLNAV 448 (807)
T KOG0066|consen 440 TNHLDLNAV 448 (807)
T ss_pred cccccccee
Confidence 999997554
No 422
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=4.9e-09 Score=106.99 Aligned_cols=126 Identities=28% Similarity=0.341 Sum_probs=85.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC----------
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY---------- 71 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~---------- 71 (413)
++.+++..++.-+-.+++|+||+||||++|++.|.+++ .+|.+..++ +.+++|..|...-+
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~vd~ 449 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAVDF 449 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc-------cceecchhHhhhhHHHHHhHHHHH
Confidence 34566666666678899999999999999999998763 567776654 34577777654322
Q ss_pred -----CCCCHHHHHHHHHHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc-C
Q 048308 72 -----LHLTVTETLVFIALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS-E 128 (413)
Q Consensus 72 -----~~lTv~e~l~f~~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~-~ 128 (413)
|..|-+|.=.-...++++ +-||.+|.....+|.+|+|||||+.||..+-..+. +-. +
T Consensus 450 ~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~ 529 (582)
T KOG0062|consen 450 MEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN 529 (582)
T ss_pred HHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC
Confidence 333222221111122221 24999999999999999999999999999887773 222 5
Q ss_pred CcEEEecC
Q 048308 129 GNSLHVGK 136 (413)
Q Consensus 129 G~~v~~G~ 136 (413)
|-+|-...
T Consensus 530 GGVv~VSH 537 (582)
T KOG0062|consen 530 GGVVLVSH 537 (582)
T ss_pred CcEEEEEC
Confidence 66655433
No 423
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.87 E-value=1.4e-08 Score=92.96 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=71.5
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCC--ccCCCCCHHHHHHH
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSN--VFYLHLTVTETLVF 82 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~--~~~~~lTv~e~l~f 82 (413)
+...+++|+.++|+||||||||||+++|+|..++ ..|.|.+.+..-.. ..++.++++.|.+ ...+..|+.+.+..
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence 3456789999999999999999999999999873 56888887643211 2234456655543 34566787777754
Q ss_pred HHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcE
Q 048308 83 IALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNS 131 (413)
Q Consensus 83 ~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~ 131 (413)
+ |=.+|+.++++|--. ..+...+-....|+.
T Consensus 96 ~---------------lR~~pd~i~igEir~---~ea~~~~~a~~tGh~ 126 (186)
T cd01130 96 A---------------LRMRPDRIIVGEVRG---GEALDLLQAMNTGHP 126 (186)
T ss_pred H---------------hccCCCEEEEEccCc---HHHHHHHHHHhcCCC
Confidence 3 335799999999875 333333333455654
No 424
>PRK00064 recF recombination protein F; Reviewed
Probab=98.81 E-value=5e-08 Score=98.59 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=28.7
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
++++++.+.|| +++|+||||||||||+.+|..
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~ 45 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYL 45 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHH
Confidence 46788888888 999999999999999999864
No 425
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.80 E-value=3.3e-09 Score=108.80 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=42.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNPLS 54 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~ 54 (413)
+|++||+.+++||+++|+|||||||||||+ +|+..+ .+| +|.++|.+..
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~--~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF--SEGYEFFLDATHSF 70 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC--CCCCEEEECCEECC
Confidence 689999999999999999999999999999 666553 455 8999998764
No 426
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.80 E-value=1e-08 Score=96.47 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=66.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+-+|+++..++|++++|.||||+||||+++.+++..-- .-.|.- +-..... ..+.+...-+..+|.+....+
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G~~-vpa~~~~i~~~~~i~~~~~~~d~~~~~~S----- 91 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMGMD-VPAKSMRLSLVDRIFTRIGARDDIMKGES----- 91 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcCCc-cCccccEeccccEEEEecCcccccccCcc-----
Confidence 45899999999999999999999999999999875210 000110 0000000 001111112222222222211
Q ss_pred HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.|... -++++-....+++|+++++|||.+|+|+.....+
T Consensus 92 tF~~e----~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l 130 (218)
T cd03286 92 TFMVE----LSETANILRHATPDSLVILDELGRGTSTHDGYAI 130 (218)
T ss_pred hHHHH----HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence 12222 2555555566789999999999999999887665
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.75 E-value=4.3e-08 Score=98.27 Aligned_cols=104 Identities=29% Similarity=0.307 Sum_probs=69.5
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH-------
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV------- 81 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~------- 81 (413)
.+...|++..+|.||-||||++++++|+++++. .|+|- .-.++|-+|.-.-=..-|||+.+.
T Consensus 363 efsdSeiivmlgEngtgkTTfi~mlag~~~pd~-~~e~p----------~lnVSykpqkispK~~~tvR~ll~~kIr~ay 431 (592)
T KOG0063|consen 363 EFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE-GGEIP----------VLNVSYKPQKISPKREGTVRQLLHTKIRDAY 431 (592)
T ss_pred ccCCceeEEEEccCCcchhHHHHHHhcCCCCCc-cCccc----------ccceeccccccCccccchHHHHHHHHhHhhh
Confidence 334457899999999999999999999987532 23331 112444444332222345555442
Q ss_pred ----HHHHc------------------CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 82 ----FIALF------------------RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 82 ----f~~~~------------------~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|.... +...||+++|..|=..+++.+.|||.+-||+..+..-
T Consensus 432 ~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A 495 (592)
T KOG0063|consen 432 MHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA 495 (592)
T ss_pred cCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence 11111 1123899999999999999999999999999987543
No 428
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.73 E-value=7.4e-08 Score=89.21 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=63.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCchhHHH
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVS 94 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~krvs 94 (413)
+++|.||+||||||++++|.+.... ...|.|.....+..-......+++.|.+.-....+..+ .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~-~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~---------------~ 66 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK-NKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFEN---------------A 66 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh-cCCcEEEEEcCCccccccCccceeeecccCCCccCHHH---------------H
Confidence 7899999999999999999887652 22466655555543222223455665432211112111 3
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308 95 RAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHV 134 (413)
Q Consensus 95 ia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~ 134 (413)
++++|..+|+++++|||. |..+...++ ....|+.+..
T Consensus 67 i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~~G~~v~~ 104 (198)
T cd01131 67 LKAALRQDPDVILVGEMR---DLETIRLALTAAETGHLVMS 104 (198)
T ss_pred HHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHHcCCEEEE
Confidence 566888899999999996 676665543 3345776543
No 429
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.69 E-value=2.9e-07 Score=87.05 Aligned_cols=131 Identities=10% Similarity=0.047 Sum_probs=103.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------LIKPQSIRLAIGAVLMKQKVASTITATIVL 338 (413)
Q Consensus 268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~ 338 (413)
-+...|+++|.+.+++..++..+++..+.+++.+++..... .++..++|.++++.+++.+.++.+.+++..
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~ 166 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLML 166 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46778999999999999999999999999988776654222 234568899999999999988888877765
Q ss_pred HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 048308 339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYD 403 (413)
Q Consensus 339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~ 403 (413)
+++ .+.+|+|++|+.+++|.+|+.|++-..-.++. +..+.+.++++++++.+++.+++..
T Consensus 167 ~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 167 PMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS-----PTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC-----cccchHHHHHHHHHHHHHHHHHHHH
Confidence 533 58999999999999999999999665444331 1245678899999999988887754
No 430
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.66 E-value=3.2e-08 Score=101.47 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=67.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh----------hccccEEEEecCCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR----------TVKRKTGFVAHSNVF 70 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~----------~~~~~~~~v~q~~~~ 70 (413)
+|+++ +.+.+||.++|+|+||+|||||+++|+|..++. ..-|.|-.++.+..+ ..+..+++++|++..
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~ 223 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP 223 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence 68899 999999999999999999999999999987643 233666666655421 123468999999999
Q ss_pred CCCCCHHHHHHHHHHc
Q 048308 71 YLHLTVTETLVFIALF 86 (413)
Q Consensus 71 ~~~lTv~e~l~f~~~~ 86 (413)
+..+++.|++.+.+..
T Consensus 224 ~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 224 LMRIKATELCHAIATY 239 (434)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999776643
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.63 E-value=3.4e-07 Score=90.59 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=65.9
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCC-ccCCCCCHHHHHHHH
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSN-VFYLHLTVTETLVFI 83 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~f~ 83 (413)
+++.+++|+.++|.||+|||||||+++|++.+++ ..|.+.+.... ......+.+..+.+.. .-....|..+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-- 212 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQ-- 212 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHH--
Confidence 4566789999999999999999999999999864 44666665321 1111123344333321 1133455555443
Q ss_pred HHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcE
Q 048308 84 ALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNS 131 (413)
Q Consensus 84 ~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~ 131 (413)
.+|-.+|+++++|||.+ ......+--+..|+.
T Consensus 213 -------------~~Lr~~pd~ii~gE~r~---~e~~~~l~a~~~g~~ 244 (308)
T TIGR02788 213 -------------SCLRMRPDRIILGELRG---DEAFDFIRAVNTGHP 244 (308)
T ss_pred -------------HHhcCCCCeEEEeccCC---HHHHHHHHHHhcCCC
Confidence 35667999999999996 333322333445653
No 432
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.63 E-value=2e-07 Score=93.63 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=68.5
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCc
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLP 89 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~ 89 (413)
.+++.++.|.||+||||||+++++.+.+.. ...+.|..-..+..-......+.+.|.+.-....|..+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~----------- 186 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFAN----------- 186 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHH-----------
Confidence 357899999999999999999999886542 23466766555543222223334444332111222211
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308 90 IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHV 134 (413)
Q Consensus 90 ~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~ 134 (413)
.+..+|-.+|+++++||+. |..++...+ ....|+.++.
T Consensus 187 ----~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~tGh~v~~ 225 (343)
T TIGR01420 187 ----ALRAALREDPDVILIGEMR---DLETVELALTAAETGHLVFG 225 (343)
T ss_pred ----HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHHcCCcEEE
Confidence 2445778899999999997 888887643 4446887653
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=8.4e-08 Score=98.85 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=51.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------------hhccccEEEEecCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------------RTVKRKTGFVAHSN 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------------~~~~~~~~~v~q~~ 68 (413)
+++++ +.+.+|+.++|+|+||+|||||+++|+|..++ ..|.|.+.|+... +..++.+.++.+.|
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 67889 99999999999999999999999999998864 5688888654321 12356688887654
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.59 E-value=3.6e-07 Score=86.67 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=29.1
Q ss_pred ceeEEecCcEEEEECCCCCCHHHH-HHHHhCCCCC
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTL-PTTLGGRLST 39 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTL-l~~l~g~~~~ 39 (413)
+.+-+++|++++|.|+|||||||| ++.+++..+.
T Consensus 17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~ 51 (230)
T PRK08533 17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456789999999999999999999 6888876543
No 435
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.55 E-value=1e-06 Score=83.27 Aligned_cols=134 Identities=9% Similarity=0.118 Sum_probs=95.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH----------HHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 048308 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW----------LIKPQSIRLAIGAVLMK---QKVASTITA 334 (413)
Q Consensus 268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~----------~l~~~~~g~~i~a~~~~---~~~A~~i~~ 334 (413)
.+...|+++|.+..++..++..+++. +++++.|++..... .+.+.+++.++++++++ .+.+..+++
T Consensus 76 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 76 LPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 56789999999988888777655554 55677788864322 24456677777777754 444466666
Q ss_pred HHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 048308 335 TIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALM 406 (413)
Q Consensus 335 ~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~ 406 (413)
+..++++ .+++|+|++|+.+++|++|+.+++-.--.++ .+....|.++++++++.+++..++....|
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~-----~~~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVS-----VDTFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCC-----CChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655543 5899999999999999999999876543332 23345688888888888888777766554
Q ss_pred h
Q 048308 407 G 407 (413)
Q Consensus 407 ~ 407 (413)
+
T Consensus 230 r 230 (232)
T TIGR00025 230 R 230 (232)
T ss_pred c
Confidence 3
No 436
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=5.3e-07 Score=92.53 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=40.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
++++ .+.+.+||.++|+|+||+|||||+++|++..+ ...|.|.+.|..
T Consensus 146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer 193 (432)
T PRK06793 146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER 193 (432)
T ss_pred EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC
Confidence 3455 49999999999999999999999999999876 356777777654
No 437
>PRK14079 recF recombination protein F; Provisional
Probab=98.45 E-value=1.8e-06 Score=86.99 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.0
Q ss_pred hHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 91 KRVSRAQELL---------INPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 91 krvsia~~l~---------~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
|++.+|..|+ .+|++++||||+++||...+..++
T Consensus 270 r~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~ 312 (349)
T PRK14079 270 RTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALL 312 (349)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHH
Confidence 6788888888 899999999999999999999885
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.40 E-value=4.9e-07 Score=99.70 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=59.2
Q ss_pred eeEEe-cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE-EEECC-cccChhccccEEEEecCCccCCCCCHHHHH-HH
Q 048308 7 RGVSS-LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN-IDYNN-NPLSRTVKRKTGFVAHSNVFYLHLTVTETL-VF 82 (413)
Q Consensus 7 s~~~~-~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~-i~~~g-~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l-~f 82 (413)
+..+. .+.++.|.|||++||||+||.++...-- .-.|. |--.. ..+ ..+.+...-+..++ ++.+.+ .|
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~m-aq~G~~vpa~~~~~i-~~~~~i~~~ig~~~------si~~~lStf 391 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALM-AKSGLPIPANEPSEI-PVFKEIFADIGDEQ------SIEQSLSTF 391 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHH-HHhCCCcccCCCccc-cccceEEEecCCcc------chhhchhHH
Confidence 44443 4578999999999999999998643100 00110 00000 000 01111111111111 222222 23
Q ss_pred HHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 83 IALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 83 ~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+..++ +++.|++++ ++|+++++|||++|+|+.....+
T Consensus 392 S~~m~---~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~al 428 (782)
T PRK00409 392 SGHMT---NIVRILEKA-DKNSLVLFDELGAGTDPDEGAAL 428 (782)
T ss_pred HHHHH---HHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHH
Confidence 44332 677777777 89999999999999999877665
No 439
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=2.2e-06 Score=86.81 Aligned_cols=46 Identities=28% Similarity=0.309 Sum_probs=37.2
Q ss_pred hHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHH-Hh-cCCcEEEecC
Q 048308 91 KRVSRAQELLI---------NPSLLFLDEPASGLDSTIAKQIL-LN-SEGNSLHVGK 136 (413)
Q Consensus 91 krvsia~~l~~---------~p~llllDEPtsgLD~~~~~~i~-ll-~~G~~v~~G~ 136 (413)
|++.+|..|+. +|++++||||+++||...+..++ .+ ..|.+++.-+
T Consensus 282 r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~ 338 (365)
T TIGR00611 282 RSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTA 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEe
Confidence 67889999998 99999999999999999999885 33 3445655533
No 440
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.37 E-value=2.6e-07 Score=84.01 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=47.7
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh--cc-ccEEEEecCCccCCCCCHHHHHHHHH
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VK-RKTGFVAHSNVFYLHLTVTETLVFIA 84 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~-~~~~~v~q~~~~~~~lTv~e~l~f~~ 84 (413)
+||+++|+|+||||||||+++|++++.+ +.++|.+.... .+ ...++.+|+....+..++.++..+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6999999999999999999999998753 46677654321 11 23456666655556777777776544
No 441
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.36 E-value=1.9e-06 Score=78.19 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=68.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCC---CeeEEEEECCcccCh----hc--cccEEEEecCCccCCCCCHHHHHH
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL---STG---ETRGNIDYNNNPLSR----TV--KRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~---~~~---~~~G~i~~~g~~~~~----~~--~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
-+|.|+|.||+||||||.+|+-.. ..| ...|++...+.+... .+ +...+|..-...++.-.+-.|.+.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 499999999999999999996432 222 123444444333221 11 113566655444443222111111
Q ss_pred HHHHcCCch--------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecC
Q 048308 82 FIALFRLPI--------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGK 136 (413)
Q Consensus 82 f~~~~~~~~--------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~ 136 (413)
--+..+.+. -=+.+-..=..+.-+.+||||-++|-+.-+..++ +.+.|-++..-+
T Consensus 118 ~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiAT 185 (233)
T COG3910 118 GEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIAT 185 (233)
T ss_pred hhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 001111111 1233334445788999999999999999998874 344565555443
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.33 E-value=1.8e-06 Score=72.65 Aligned_cols=100 Identities=27% Similarity=0.288 Sum_probs=54.5
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCchh
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIK 91 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~k 91 (413)
+|+.+.|.||+|+||||+++.|++...... .+.+.++............. ...........+..+. .
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~ 67 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELR-----------L 67 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHH-----------H
Confidence 478899999999999999999999875311 23455554432211000000 0000000001111111 1
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 92 RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 92 rvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+..+..+--.+|+++++||+..-.+........
T Consensus 68 ~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 68 RLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 222222333347999999999999988876543
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.33 E-value=1e-06 Score=91.63 Aligned_cols=91 Identities=23% Similarity=0.385 Sum_probs=60.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
+++.+..++.|++++++||||+||||++..|++++.. .+| .++++.+.+|. ...++.|+|.+
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~--~~G-------------~~kV~LI~~Dt---~RigA~EQLr~ 307 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM--RHG-------------ASKVALLTTDS---YRIGGHEQLRI 307 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH--hcC-------------CCeEEEEeCCc---cchhHHHHHHH
Confidence 4566677888999999999999999999999987631 112 12467777764 45788999987
Q ss_pred HHH-cCCch----hH--HHHHHHHhhCCCEEEEeCC
Q 048308 83 IAL-FRLPI----KR--VSRAQELLINPSLLFLDEP 111 (413)
Q Consensus 83 ~~~-~~~~~----kr--vsia~~l~~~p~llllDEP 111 (413)
.+. .+.+. .+ ..++..=+.+-++++.|++
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTa 343 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTI 343 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCC
Confidence 544 33332 22 2223333455577777774
No 444
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.27 E-value=4.9e-06 Score=77.82 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 101 INPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 101 ~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.++++++||||.++||...+..+.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~ 180 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLA 180 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHH
T ss_pred cccccccccccccccccccccccc
Confidence 467999999999999999999884
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.25 E-value=1.2e-06 Score=65.58 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=27.5
Q ss_pred ccceeEEec-CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 4 KGIRGVSSL-GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 4 ~~vs~~~~~-Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++.++.+.+ |++++|.||||||||||+++|.=.+
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345667775 5799999999999999999986543
No 446
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.23 E-value=2.4e-05 Score=75.12 Aligned_cols=133 Identities=10% Similarity=-0.044 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048308 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW----------LIKPQSIRLAIGAVLMKQKVASTITATIV 337 (413)
Q Consensus 268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~ 337 (413)
-+...+.+||++.+.-..++..++...+.+++ |..+.... .++..++|.++|+++++.+.+..+.++++
T Consensus 99 v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~ 177 (253)
T TIGR01291 99 ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVI 177 (253)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 36678999999988766666666555554444 44333221 34456899999999999999888877777
Q ss_pred HHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 048308 338 LQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMG 407 (413)
Q Consensus 338 ~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~ 407 (413)
.+++ .+.+|+|++|+.+++|+.|..|++=..-+++. ..+.|.++++++++.+++..++....|+
T Consensus 178 ~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------~~~~~~~~~~l~~~~vv~~~la~~~fr~ 249 (253)
T TIGR01291 178 TPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------GTQVGLHLGALCLYAVVPFFISAALLRR 249 (253)
T ss_pred HHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6654 58999999999999999999999765544431 1234667888888888877776655544
No 447
>PRK13695 putative NTPase; Provisional
Probab=98.23 E-value=5.1e-06 Score=75.05 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308 91 KRVSRAQELLINPSLLFLDE--PASGLDSTIAKQIL-LNSEGNSLHV 134 (413)
Q Consensus 91 krvsia~~l~~~p~llllDE--PtsgLD~~~~~~i~-ll~~G~~v~~ 134 (413)
.+..+.+..+.+|+++++|| |+.++|......+. ++..|+.+..
T Consensus 85 ~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~ 131 (174)
T PRK13695 85 IGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIA 131 (174)
T ss_pred HHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEE
Confidence 35556666778999999999 66677766555552 3356665544
No 448
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=1.7e-06 Score=88.99 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=50.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC---cccC--------hhccccEEEEecCCc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN---NPLS--------RTVKRKTGFVAHSNV 69 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g---~~~~--------~~~~~~~~~v~q~~~ 69 (413)
+++.++ .+.+||.++|+||||||||||+++|++..++ ..|.|.+.| ++.. +..++.+++|.|.|.
T Consensus 155 aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p--d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 155 VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF--DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 456675 8999999999999999999999999998763 568887754 4332 122356899999874
No 449
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.21 E-value=5.8e-07 Score=87.93 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=50.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR 87 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~ 87 (413)
.+++|.||||||||||+++|.+++...+.+|.+.+ +|.-......+..+.. |+..+.+++++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 69999999999999999999988752223455544 4433332222334543 6667788999999998877664
No 450
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.16 E-value=2e-06 Score=81.29 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=51.9
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE----EEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN----IDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF 86 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~----i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~ 86 (413)
.+..+++|.||||||||||.+.|++.+++ ..|. |..++........+..+++++.+ .....++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~--~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ--DGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh--ccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999998863 3455 55555433333333456666533 44678888888776655
Q ss_pred CC
Q 048308 87 RL 88 (413)
Q Consensus 87 ~~ 88 (413)
+.
T Consensus 108 ~~ 109 (229)
T PRK09270 108 RA 109 (229)
T ss_pred Hc
Confidence 43
No 451
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.10 E-value=1.2e-06 Score=82.43 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=41.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE---EECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---DYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR 87 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i---~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~ 87 (413)
+++|.|+||||||||.+.|++.+......+.+ ..+|.-......+..+.. |...+.+++++.....+...++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~-~~~g~p~~~d~~~l~~~L~~l~ 75 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLM-DRKGFPESYDMEALLKFLKDIK 75 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhh-hcCCCcccCCHHHHHHHHHHHH
Confidence 57999999999999999999987521112333 335543222212223333 3334456666666555544433
No 452
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.09 E-value=3.9e-06 Score=76.75 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=35.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHS 67 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~ 67 (413)
|++++|+||||||||||++.|++...+ .+.+++..... ..++.+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998642 46666654432 122345666665
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=98.08 E-value=3.2e-06 Score=85.30 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=51.6
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCC
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~l 74 (413)
.+.-.+++|++++++|+||+|||||+|+|+|... ...|+|..++.... ....+.+.+++|+..++.+-
T Consensus 187 ~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dtp 255 (356)
T PRK01889 187 VLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTP 255 (356)
T ss_pred HHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCCC
Confidence 3444567999999999999999999999999876 46799998875432 23345678888877666543
No 454
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.08 E-value=4.6e-06 Score=82.83 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=48.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------h--hccccEEEEecCCccCCCCCHHHHH
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------R--TVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~--~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|++++++||||+||||++..|++.+.. ..+.|.+-+.+.. . ..++.+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999999999998752 3467776554321 1 1234578888865555555556665
Q ss_pred HH
Q 048308 81 VF 82 (413)
Q Consensus 81 ~f 82 (413)
..
T Consensus 190 ~~ 191 (318)
T PRK10416 190 QA 191 (318)
T ss_pred HH
Confidence 43
No 455
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.08 E-value=3.3e-06 Score=85.01 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=70.0
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEE------EECCcccCh--------hccc--cEEEEecCCccC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGE---TRGNI------DYNNNPLSR--------TVKR--KTGFVAHSNVFY 71 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~---~~G~i------~~~g~~~~~--------~~~~--~~~~v~q~~~~~ 71 (413)
+||++++++|.||-||||-+++++|+.++.. ..+-. .+-|.++.. ..+. +-.||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 7999999999999999999999999987521 11111 111211111 0110 012222222111
Q ss_pred CCCCHHHHHHHHHHc----------CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 72 LHLTVTETLVFIALF----------RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 72 ~~lTv~e~l~f~~~~----------~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
..+|+++|.--..- .+ ..||.+||.+-+.+.++.++|||.+-||...+.+-
T Consensus 178 -k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLka 252 (592)
T KOG0063|consen 178 -KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKA 252 (592)
T ss_pred -HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhH
Confidence 23566655422111 00 12899999999999999999999999999887553
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.07 E-value=8.2e-06 Score=71.29 Aligned_cols=33 Identities=39% Similarity=0.704 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN 49 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 49 (413)
+++|.|+||+||||+++.+++.... ..+.+.+-
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~ 33 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYV 33 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEE
Confidence 4789999999999999999887542 23444443
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.07 E-value=4.7e-06 Score=79.98 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.2
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLST 39 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~ 39 (413)
.+.+||.++|+||+|+|||||++.+++....
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 5689999999999999999999999988753
No 458
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.06 E-value=8.7e-06 Score=82.13 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=65.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCC-eeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGE-TRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETLVFIALF 86 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~ 86 (413)
++|.+++|.||+||||||++++|.+.+.... ..+.|.....+..- ..+...+.+.|...--...+..+.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~----- 206 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVR----- 206 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHH-----
Confidence 5899999999999999999999998764211 12355444444431 12223467777643111122222221
Q ss_pred CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308 87 RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHV 134 (413)
Q Consensus 87 ~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~ 134 (413)
.+|=.+|+++++.|-= |..++...+ ....|+.++.
T Consensus 207 ----------~aLR~~Pd~i~vGEiR---d~et~~~al~aa~tGh~v~t 242 (358)
T TIGR02524 207 ----------NALRRKPHAILVGEAR---DAETISAALEAALTGHPVYT 242 (358)
T ss_pred ----------HHhccCCCEEeeeeeC---CHHHHHHHHHHHHcCCcEEE
Confidence 2566799999999943 777775443 4456876643
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.05 E-value=5.7e-06 Score=76.22 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++|.||||||||||.++|++.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999999873
No 460
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.04 E-value=1.8e-06 Score=80.29 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=26.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|++++|.||||||||||++.|++.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999875
No 461
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=1.8e-05 Score=80.03 Aligned_cols=107 Identities=24% Similarity=0.368 Sum_probs=69.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
++++.+..++.|++++++||||+||||++..|+++... ..| .+.++++..|.. .....|.|.
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~--~~G-------------~~~V~lit~D~~---R~ga~EqL~ 187 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVM--RFG-------------ASKVALLTTDSY---RIGGHEQLR 187 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC-------------CCeEEEEecccc---cccHHHHHH
Confidence 45667788999999999999999999999999986420 001 134666664433 235567775
Q ss_pred H-HHHcCCch------hHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHh
Q 048308 82 F-IALFRLPI------KRVSRAQELLINPSLLFLDEP-ASGLDSTIAKQILLN 126 (413)
Q Consensus 82 f-~~~~~~~~------krvsia~~l~~~p~llllDEP-tsgLD~~~~~~i~ll 126 (413)
. +..++.|. +.+..+..=+.+.+++++|+| .+..|.....++-.+
T Consensus 188 ~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 188 IFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred HHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence 4 44444443 223333333578899999999 445677665555433
No 462
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=8.1e-06 Score=91.24 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.3
Q ss_pred hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308 91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i 123 (413)
||+.||++|+.+| ++++|||||+|||+..+.++
T Consensus 494 QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L 528 (924)
T TIGR00630 494 QRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL 528 (924)
T ss_pred HHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH
Confidence 8999999999986 89999999999999999877
No 463
>PRK15066 inner membrane transport permease; Provisional
Probab=98.00 E-value=0.00014 Score=69.85 Aligned_cols=139 Identities=12% Similarity=0.005 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------LIKPQSIRLAIGAVLMKQKVASTITATIVL 338 (413)
Q Consensus 268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~ 338 (413)
.+...+.+++++...-..++..++..++.+...|.++.... .+.....|.++|++.++.+....+.++++.
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~~~ 180 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFVLT 180 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46667788888877655555555444444444466543211 111223477888888888887777776666
Q ss_pred HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308 339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGR 410 (413)
Q Consensus 339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 410 (413)
+++ .+++|+|++|+.+++|++|..|++=..-+++ +..+.|.++++++++.+++.+++....|+.++
T Consensus 181 pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 181 PLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred HHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 544 5789999999999999999999886443322 11245888999999999999999888887665
Q ss_pred cC
Q 048308 411 IS 412 (413)
Q Consensus 411 ~~ 412 (413)
.+
T Consensus 255 ~~ 256 (257)
T PRK15066 255 LR 256 (257)
T ss_pred cC
Confidence 43
No 464
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.99 E-value=9.5e-06 Score=90.87 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308 91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i 123 (413)
||+.||++|..+| ++++|||||+|||+..+.++
T Consensus 496 QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L 530 (943)
T PRK00349 496 QRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL 530 (943)
T ss_pred HHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH
Confidence 8999999999997 99999999999999999887
No 465
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.95 E-value=2.2e-05 Score=82.32 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=75.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhcc---ccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK---RKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~---~~~~~v~q~~~~~~~lTv~e 78 (413)
++++++..+..|+.++++||||+|||||++.|+|.++ +.+|++.+.+..+..... ..-.. .+.+.--|+-|
T Consensus 199 ~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp--p~~g~e~le~~~i~s~~g~~~~~~~~-~~rPfr~ph~~--- 272 (506)
T PRK09862 199 GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP--DLSNEEALESAAILSLVNAESVQKQW-RQRPFRSPHHS--- 272 (506)
T ss_pred HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC--CCCCcEEEecchhhhhhccccccCCc-CCCCccCCCcc---
Confidence 4678899999999999999999999999999999987 467887777655421100 00111 12222223333
Q ss_pred HHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcE
Q 048308 79 TLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNS 131 (413)
Q Consensus 79 ~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~ 131 (413)
...++..+.. ....-+.--..+--+||+||- .-++...+..+. .|.+|++
T Consensus 273 -~s~~~l~GGg-~~~~pG~l~~A~gGvLfLDEi-~e~~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 273 -ASLTAMVGGG-AIPGPGEISLAHNGVLFLDEL-PEFERRTLDALREPIESGQI 323 (506)
T ss_pred -chHHHHhCCC-ceehhhHhhhccCCEEecCCc-hhCCHHHHHHHHHHHHcCcE
Confidence 3334444432 112223233345589999996 557777776664 5666765
No 466
>PRK08149 ATP synthase SpaL; Validated
Probab=97.94 E-value=9.6e-06 Score=83.24 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=51.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh--------hccccEEEEecCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR--------TVKRKTGFVAHSN 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~ 68 (413)
+++++ +.+.+||.++|+|+||+|||||+++|++..++. .+.|.|..+|++..+ ...+++++|....
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 67888 999999999999999999999999999987643 245889999987632 1224566666543
No 467
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.93 E-value=4.6e-06 Score=77.08 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=64.9
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCch
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI 90 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~ 90 (413)
++|++++|+|+||||||||.+.|++++.. ...|.+.++|.+........++|.+|+. .+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~~--------~~~~~--------- 83 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDADR--------KENIR--------- 83 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCcccH--------HHHHH---------
Confidence 68899999999999999999999997642 2347899998765433223356665543 23221
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc-CCc-EEEecCc
Q 048308 91 KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS-EGN-SLHVGKG 137 (413)
Q Consensus 91 krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~-~G~-~v~~G~~ 137 (413)
+...+|+.++..-.+++. .+.+++...+..+. ++. .|. +||...+
T Consensus 84 ~l~~~a~~~~~~G~~VI~--~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~ 131 (198)
T PRK03846 84 RVGEVAKLMVDAGLVVLT--AFISPHRAERQMVRERLGEGEFIEVFVDTP 131 (198)
T ss_pred HHHHHHHHHhhCCCEEEE--EeCCCCHHHHHHHHHHcccCCEEEEEEcCC
Confidence 122355555554444443 34556656665554 333 344 3555443
No 468
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.91 E-value=1.3e-05 Score=74.28 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=26.5
Q ss_pred HHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH
Q 048308 94 SRAQELLINP---SLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 94 sia~~l~~~p---~llllDEPtsgLD~~~~~~i~ 124 (413)
.+...+...+ .++++|||-++|++..+.+++
T Consensus 246 ~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~ 279 (303)
T PF13304_consen 246 SLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI 279 (303)
T ss_dssp HHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH
T ss_pred HHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH
Confidence 6777776655 899999999999999998884
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.90 E-value=6.3e-05 Score=67.98 Aligned_cols=26 Identities=46% Similarity=0.758 Sum_probs=24.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999864
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.85 E-value=1.1e-05 Score=74.46 Aligned_cols=28 Identities=43% Similarity=0.572 Sum_probs=26.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6899999999999999999999999864
No 471
>PLN02796 D-glycerate 3-kinase
Probab=97.84 E-value=7.3e-06 Score=81.67 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=41.5
Q ss_pred ccccceeEE---ecCcE-----EEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccC
Q 048308 2 ILKGIRGVS---SLGEL-----LAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLS 54 (413)
Q Consensus 2 iL~~vs~~~---~~Ge~-----~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~ 54 (413)
++++++..+ ++|+. ++|.|+||||||||++.|.+.++. +...|.|.++|....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 355666665 57776 999999999999999999998864 234688888887654
No 472
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=97.83 E-value=0.0004 Score=66.44 Aligned_cols=130 Identities=8% Similarity=0.069 Sum_probs=90.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChH-H----------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048308 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTP-W----------LIKPQSIRLAIGAVLMKQKVASTITATI 336 (413)
Q Consensus 268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~-~----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~ 336 (413)
.+...+.++++++..-..++..+++.++.+.. |.++... . .++..++|.++|+++++.+.++.+.+++
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778899999999877777665555544433 6554421 1 3455679999999999998888877766
Q ss_pred HHHHh--------hc---cCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 048308 337 VLQYL--------LQ---RLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDAL 405 (413)
Q Consensus 337 ~~~~~--------~~---~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L 405 (413)
+.+++ .+ ++|+|++|+.+++|++|..|++=.--+++ ..|..+.+++++.+++..++....
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g~---------~~~~~~~~~~~~~~v~~~~~~~~f 248 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYGQ---------LNLPALGWTLGATTLFTLLAFWGF 248 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhCC---------cchhHHHHHHHHHHHHHHHHHHHh
Confidence 55543 23 45899999999999999999885442221 125566777788777777776665
Q ss_pred Hh
Q 048308 406 MG 407 (413)
Q Consensus 406 ~~ 407 (413)
|+
T Consensus 249 r~ 250 (253)
T TIGR03861 249 DP 250 (253)
T ss_pred hc
Confidence 54
No 473
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=97.80 E-value=0.00039 Score=66.13 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccCCC--hHH--------HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHH
Q 048308 271 SSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKST--TPW--------LIKPQSIRLAIG-AVLMKQKVASTITATIVLQ 339 (413)
Q Consensus 271 ~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~--~~~--------~l~~~~~g~~i~-a~~~~~~~A~~i~~~~~~~ 339 (413)
..+++++.+...-...+...+...++.+..|.... ... .+...++|.+++ ....+.+.+..++.++..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP 210 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566666666555555555555555555553322 221 345667777555 3556677787777666655
Q ss_pred Hh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308 340 YL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGR 410 (413)
Q Consensus 340 ~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 410 (413)
+. .+.+|.|++|+.++.|..|+.|++-.....+.. .++.|.++++++++.+.+.+++...+|+.++
T Consensus 211 ~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-----NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 43 589999999999999999999999877666531 1237889999999999999999999988655
No 474
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.79 E-value=6e-06 Score=74.06 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=40.6
Q ss_pred ECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHHHHHH
Q 048308 19 LGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETLVFIA 84 (413)
Q Consensus 19 lG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~f~~ 84 (413)
||+|||||||++++|++++ |.+.++|..... ..+...++.+|++...+.+++.++..+..
T Consensus 1 ~G~sGsGKSTla~~la~~l------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 6999999999999999986 345666643211 22233577777765566667777666543
No 475
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.79 E-value=3.1e-05 Score=76.99 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=39.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 50 (413)
+++++ +.+.+||.++|+|+||+|||||+++|+|..++ ..|.+..-|
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~--~~~vi~~iG 104 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA--DVNVIALIG 104 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEe
Confidence 57888 99999999999999999999999999998864 346555544
No 476
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.78 E-value=5.6e-05 Score=71.57 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=25.4
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
.|=+++|+++.|.|+||||||||...++
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHH
Confidence 5668999999999999999999988874
No 477
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.75 E-value=9.4e-05 Score=71.06 Aligned_cols=36 Identities=36% Similarity=0.344 Sum_probs=28.5
Q ss_pred cccceeEEecCc-EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 3 LKGIRGVSSLGE-LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 3 L~~vs~~~~~Ge-~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++.++..+++|+ +++|.||||+|||||++.+.+.++
T Consensus 32 ~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 32 MAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344445555555 999999999999999999988765
No 478
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.74 E-value=2.6e-05 Score=82.39 Aligned_cols=63 Identities=21% Similarity=0.143 Sum_probs=49.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
-+++|.||||||||||++.|++.++ ..|.|.++|.... .+...+.+|++..++..++.|+|.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp---~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP---SIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC---CcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence 4899999999999999999999874 4688999886421 1235567777777777888888854
No 479
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.74 E-value=4.3e-05 Score=78.85 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=42.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
+++++ +.+.+||.++|+|+||+|||||+++|++..++ ..|.+...|..
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~--d~~vi~~iGer 200 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQC--DVNVIALIGER 200 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CeEEEEEEccC
Confidence 67889 99999999999999999999999999998763 45888877754
No 480
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=7.1e-05 Score=76.85 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=53.2
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH-Hc
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS--TGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA-LF 86 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~-~~ 86 (413)
+++|++++++||||+||||+++.|+++.. .+.. .++.+..+.. .....|.+.+.+ .+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~-----------------~v~~i~~d~~---rigalEQL~~~a~il 247 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGAD-----------------KVALLTTDSY---RIGGHEQLRIYGKLL 247 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-----------------eEEEEecCCc---chhHHHHHHHHHHHc
Confidence 47899999999999999999999998631 0111 1233332221 123344443333 33
Q ss_pred CCch------hHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 87 RLPI------KRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 87 ~~~~------krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
++|. ..+..+..-+.+.++++.|. .|.-..
T Consensus 248 Gvp~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqr 283 (420)
T PRK14721 248 GVSVRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQR 283 (420)
T ss_pred CCceecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcc
Confidence 4332 23445555678889999996 477654
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.72 E-value=2.7e-05 Score=70.34 Aligned_cols=26 Identities=46% Similarity=0.589 Sum_probs=24.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 482
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.71 E-value=7.4e-05 Score=77.03 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=40.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN 51 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 51 (413)
+++++ +.+.+|+.++|+|+||+|||||+++|++..++ ..|.+...|.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG~ 181 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASA--DVNVIALIGE 181 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEcc
Confidence 67889 99999999999999999999999999998763 4576666443
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.70 E-value=8.3e-06 Score=73.96 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
..+++|+|+|||||||+.+.|+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999943
No 484
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=5.7e-05 Score=77.85 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=47.5
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccChh-------ccccEEEEecCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRT-------VKRKTGFVAHSN 68 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~-------~~~~~~~v~q~~ 68 (413)
+.+.+||.++|+|+||+|||||+++|+|..++. .+.|.|..+|.+..+. ..+..+.|.|+.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 889999999999999999999999999988753 2458999999876431 123456666654
No 485
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.69 E-value=3.8e-05 Score=79.24 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=41.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCccc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPL 53 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~ 53 (413)
+++++ +.+.+||.++|+|+||+|||||+++|+|..++. .+.|.|-..|.+.
T Consensus 158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev 209 (451)
T PRK05688 158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREV 209 (451)
T ss_pred eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhH
Confidence 57788 999999999999999999999999999987643 2346676666544
No 486
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.68 E-value=4.2e-05 Score=78.71 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=41.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
+++++ +.+.+||.++|+|+||+|||||+++|++..++ ..|.+.+.|..
T Consensus 145 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~--d~~vi~~iGeR 192 (433)
T PRK07594 145 AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA--DSNVLVLIGER 192 (433)
T ss_pred eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCC--CEEEEEEECCC
Confidence 67888 99999999999999999999999999998764 45777766653
No 487
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.68 E-value=4.1e-05 Score=69.46 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=30.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+|++++.+.+++++ +|+|++|||||||++.+.+.
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcC
Confidence 47888889888887 99999999999999999874
No 488
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.67 E-value=4.9e-05 Score=70.62 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=25.1
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++.+++|.|+||||||||.+.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999999876
No 489
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.67 E-value=0.00028 Score=63.77 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHhhCCCEEEEeCCCCCCC---HHHHHHHH-----HhcCCcEEEe
Q 048308 98 ELLINPSLLFLDEPASGLD---STIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 98 ~l~~~p~llllDEPtsgLD---~~~~~~i~-----ll~~G~~v~~ 134 (413)
....+|+++++|||++.+| ......+. +.+.|.++..
T Consensus 91 ~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~ 135 (187)
T cd01124 91 IEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLL 135 (187)
T ss_pred HHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3457899999999999999 54444441 3345665444
No 490
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=9.9e-05 Score=80.55 Aligned_cols=37 Identities=35% Similarity=0.604 Sum_probs=32.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++++.++.+++|++++++||||+||||++..|++++.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 4667788888899999999999999999999999863
No 491
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.63 E-value=5.8e-05 Score=77.49 Aligned_cols=47 Identities=23% Similarity=0.131 Sum_probs=40.6
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
|.++.+.+||.++|+|+||+|||||+++|++..++ ..|.|...|...
T Consensus 132 D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~--~~gvi~~iGer~ 178 (418)
T TIGR03498 132 DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDA--DVVVIALVGERG 178 (418)
T ss_pred eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEeeec
Confidence 46899999999999999999999999999998763 568887777643
No 492
>PRK00098 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.00012 Score=72.18 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=45.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hc-cccEEEEecCCccC----CCCCHHHHH
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TV-KRKTGFVAHSNVFY----LHLTVTETL 80 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~-~~~~~~v~q~~~~~----~~lTv~e~l 80 (413)
+|++++++|+||+|||||+|.|.|.... ..|+|.. .|+.... .. ....+++.+.+-+. ..++.+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~--~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 240 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLEL--KTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELE 240 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCC--CCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHH
Confidence 5899999999999999999999998653 4577765 3332221 11 12346777766554 456666544
Q ss_pred H
Q 048308 81 V 81 (413)
Q Consensus 81 ~ 81 (413)
.
T Consensus 241 ~ 241 (298)
T PRK00098 241 H 241 (298)
T ss_pred H
Confidence 3
No 493
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.61 E-value=0.0001 Score=72.30 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=47.8
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hccc-cEEEEecCCcc---C-CCCCHH
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TVKR-KTGFVAHSNVF---Y-LHLTVT 77 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~~~-~~~~v~q~~~~---~-~~lTv~ 77 (413)
.++ +++++++|+||+|||||+|.|.|.... ..|++.. .|..... ..+. ..+++.+.+-+ . ..++..
T Consensus 158 ~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~--~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 234 (287)
T cd01854 158 YLK-GKTSVLVGQSGVGKSTLINALLPDLDL--ATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPE 234 (287)
T ss_pred hhc-cceEEEECCCCCCHHHHHHHHhchhhc--cccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHH
Confidence 344 589999999999999999999998752 4577754 2322211 1222 25677777655 2 567888
Q ss_pred HHHHHH
Q 048308 78 ETLVFI 83 (413)
Q Consensus 78 e~l~f~ 83 (413)
|...+-
T Consensus 235 ~~~~~f 240 (287)
T cd01854 235 ELAHYF 240 (287)
T ss_pred HHHHHh
Confidence 877543
No 494
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.59 E-value=7e-05 Score=77.46 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=38.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 50 (413)
+++++ +.+.+||.++|+|+||+|||||+++|++..++ ..|.+...|
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG 198 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA--DVNVIALIG 198 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CEEEEEEEe
Confidence 57777 99999999999999999999999999998764 345544444
No 495
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.57 E-value=5.1e-05 Score=68.94 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=25.9
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
++++++.+.|| +++|.||||+||||++.+|.-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 46777888887 999999999999999998843
No 496
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.56 E-value=0.00011 Score=75.56 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=41.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
+++++ +.+.+||.++|+|+||+|||||+++|++..++ ..|.|...|...
T Consensus 127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~--~~gvi~~~Ger~ 175 (413)
T TIGR03497 127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKA--DINVIALIGERG 175 (413)
T ss_pred eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CeEEEEEEccch
Confidence 57788 99999999999999999999999999998763 457777777543
No 497
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.56 E-value=9.8e-05 Score=76.04 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=40.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
+++++ +.+.+|+.++|+|+||+|||||+++|++..+ ...+.|...|...
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~--~~v~vi~~iGerg 195 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL--APIKVVALIGERG 195 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC--CCEEEEEeeCccc
Confidence 47788 9999999999999999999999999998765 3457777666543
No 498
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.55 E-value=0.00018 Score=60.97 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=24.0
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..+.|.||+|+|||||++.+++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999875
No 499
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.55 E-value=0.0003 Score=70.64 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=59.6
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEE-ecCCccCCCCCHHHHHHHHHHcC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFV-AHSNVFYLHLTVTETLVFIALFR 87 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v-~q~~~~~~~lTv~e~l~f~~~~~ 87 (413)
++.+..+.|.||+|||||||+++|.+..++ .++.+.+.... ......+.+... .++..-....|..+.+..
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~--~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~----- 231 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPP--QERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA----- 231 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCC--CCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHH-----
Confidence 567889999999999999999999998864 34555554321 111112222222 222111234555555432
Q ss_pred CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc
Q 048308 88 LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN 130 (413)
Q Consensus 88 ~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~ 130 (413)
+|=.+|+.+++.|--. ..+...+-.+..|+
T Consensus 232 ----------~LR~~pD~IivGEiR~---~ea~~~l~a~~tGh 261 (344)
T PRK13851 232 ----------SLRMRPDRILLGEMRD---DAAWAYLSEVVSGH 261 (344)
T ss_pred ----------HhcCCCCeEEEEeeCc---HHHHHHHHHHHhCC
Confidence 3445899999999874 33333333444555
No 500
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.52 E-value=5.5e-05 Score=69.80 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=24.9
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN 49 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 49 (413)
++|+|+||+|||||+|+|.|...+ .+|.+..+
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~--~~~~~~~~ 35 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHE--EEGAAPTG 35 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC--CCCccccC
Confidence 689999999999999999997542 33554443
Done!