Query 048308
Match_columns 413
No_of_seqs 256 out of 3176
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 9E-32 3.1E-36 269.9 15.9 137 2-140 18-221 (381)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 4.3E-32 1.5E-36 270.5 13.4 120 2-123 19-177 (359)
3 3tif_A Uncharacterized ABC tra 100.0 1.2E-31 4.1E-36 253.3 15.2 154 2-170 20-224 (235)
4 3tui_C Methionine import ATP-b 100.0 8.1E-32 2.8E-36 268.7 14.5 120 2-123 43-202 (366)
5 1z47_A CYSA, putative ABC-tran 100.0 2.9E-31 9.9E-36 264.4 16.5 121 1-123 29-184 (355)
6 2olj_A Amino acid ABC transpor 100.0 2.3E-31 7.9E-36 255.4 15.1 133 2-136 39-216 (263)
7 3gfo_A Cobalt import ATP-bindi 100.0 2.9E-31 1E-35 256.2 14.7 160 2-175 23-228 (275)
8 1b0u_A Histidine permease; ABC 100.0 4.1E-31 1.4E-35 253.5 15.2 155 2-170 21-232 (262)
9 1vpl_A ABC transporter, ATP-bi 100.0 4.5E-31 1.5E-35 252.4 15.1 155 2-170 30-225 (256)
10 2yyz_A Sugar ABC transporter, 100.0 4E-31 1.4E-35 263.9 15.0 138 2-141 18-222 (359)
11 4g1u_C Hemin import ATP-bindin 100.0 2.5E-31 8.6E-36 255.6 12.5 157 2-172 26-229 (266)
12 2pcj_A ABC transporter, lipopr 100.0 5.3E-31 1.8E-35 247.1 14.2 133 2-136 19-197 (224)
13 2it1_A 362AA long hypothetical 100.0 5.4E-31 1.9E-35 263.2 15.1 137 2-140 18-221 (362)
14 1g29_1 MALK, maltose transport 100.0 8E-31 2.7E-35 263.1 16.2 138 2-141 18-228 (372)
15 1ji0_A ABC transporter; ATP bi 100.0 5E-31 1.7E-35 249.8 13.7 155 2-170 21-218 (240)
16 1g6h_A High-affinity branched- 100.0 4.3E-31 1.5E-35 252.7 12.1 156 2-171 22-233 (257)
17 1oxx_K GLCV, glucose, ABC tran 100.0 4.4E-31 1.5E-35 263.4 12.2 120 2-123 20-179 (353)
18 3d31_A Sulfate/molybdate ABC t 100.0 6.3E-31 2.2E-35 261.5 12.7 120 2-123 15-166 (348)
19 1v43_A Sugar-binding transport 100.0 8.2E-31 2.8E-35 262.8 13.6 137 2-140 26-229 (372)
20 3nh6_A ATP-binding cassette SU 100.0 7.3E-31 2.5E-35 256.9 11.2 158 2-175 69-272 (306)
21 2onk_A Molybdate/tungstate ABC 100.0 1.5E-30 5.1E-35 246.6 11.3 120 2-124 14-166 (240)
22 1sgw_A Putative ABC transporte 100.0 2.6E-30 8.9E-35 240.8 11.6 148 2-164 24-206 (214)
23 2ff7_A Alpha-hemolysin translo 100.0 3.8E-30 1.3E-34 244.8 11.8 153 2-170 24-222 (247)
24 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-30 1.2E-34 245.3 11.3 155 1-170 14-212 (249)
25 2yz2_A Putative ABC transporte 100.0 1.7E-29 5.8E-34 242.8 15.6 155 2-170 22-217 (266)
26 2ixe_A Antigen peptide transpo 100.0 7.2E-30 2.5E-34 246.1 13.0 154 2-171 34-236 (271)
27 2ihy_A ABC transporter, ATP-bi 100.0 4.8E-30 1.7E-34 248.2 8.9 155 2-170 36-242 (279)
28 2ghi_A Transport protein; mult 100.0 2.8E-29 9.5E-34 240.5 12.8 154 2-172 35-234 (260)
29 2pze_A Cystic fibrosis transme 100.0 3.4E-29 1.2E-33 235.5 12.5 124 1-136 22-187 (229)
30 2zu0_C Probable ATP-dependent 100.0 1.2E-28 4.1E-33 237.0 16.4 157 2-170 35-244 (267)
31 1mv5_A LMRA, multidrug resista 100.0 3.4E-30 1.2E-34 244.4 5.2 158 1-174 16-220 (243)
32 2nq2_C Hypothetical ABC transp 100.0 9.6E-29 3.3E-33 235.9 12.8 144 2-168 20-206 (253)
33 2d2e_A SUFC protein; ABC-ATPas 100.0 6.2E-29 2.1E-33 236.7 11.3 157 2-172 18-225 (250)
34 2cbz_A Multidrug resistance-as 100.0 9.6E-29 3.3E-33 233.7 12.3 146 1-171 19-208 (237)
35 4a82_A Cystic fibrosis transme 100.0 1.5E-28 5.1E-33 260.4 11.4 158 2-175 356-559 (578)
36 3gd7_A Fusion complex of cysti 100.0 6.1E-29 2.1E-33 250.7 7.4 119 1-123 35-194 (390)
37 3qf4_A ABC transporter, ATP-bi 99.9 2.2E-28 7.4E-33 259.5 10.6 159 1-175 357-561 (587)
38 3b60_A Lipid A export ATP-bind 99.9 5.4E-28 1.8E-32 256.3 13.6 158 1-174 357-561 (582)
39 2pjz_A Hypothetical protein ST 99.9 8.9E-28 3E-32 230.4 13.7 117 2-124 20-168 (263)
40 3qf4_B Uncharacterized ABC tra 99.9 4.2E-28 1.4E-32 257.8 11.9 159 2-176 370-574 (598)
41 3b5x_A Lipid A export ATP-bind 99.9 6.4E-28 2.2E-32 255.7 12.4 157 2-174 358-561 (582)
42 2yl4_A ATP-binding cassette SU 99.9 9.4E-28 3.2E-32 255.0 12.1 153 2-170 359-560 (595)
43 2bbs_A Cystic fibrosis transme 99.9 2.8E-27 9.6E-32 230.0 14.2 123 1-136 52-216 (290)
44 4f4c_A Multidrug resistance pr 99.9 1.1E-26 3.8E-31 266.0 9.2 120 1-123 1093-1256(1321)
45 3g5u_A MCG1178, multidrug resi 99.9 8.8E-26 3E-30 258.0 12.2 119 2-123 405-565 (1284)
46 4f4c_A Multidrug resistance pr 99.9 7.2E-26 2.5E-30 259.3 10.2 138 1-141 432-640 (1321)
47 3g5u_A MCG1178, multidrug resi 99.9 1.9E-25 6.5E-30 255.2 11.6 158 2-175 1048-1253(1284)
48 3bk7_A ABC transporter ATP-bin 99.9 5.6E-23 1.9E-27 218.3 10.8 122 3-135 372-528 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.9 9.3E-23 3.2E-27 214.0 12.3 111 3-124 302-441 (538)
50 3ozx_A RNAse L inhibitor; ATP 99.9 4.8E-22 1.7E-26 208.4 14.3 122 3-134 284-441 (538)
51 3ux8_A Excinuclease ABC, A sub 99.9 9.2E-23 3.1E-27 219.5 8.7 140 2-141 33-297 (670)
52 3j16_B RLI1P; ribosome recycli 99.9 1.4E-21 4.7E-26 207.4 11.6 122 2-134 362-523 (608)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 2.8E-21 9.7E-26 202.7 9.9 130 2-134 37-213 (538)
54 3bk7_A ABC transporter ATP-bin 99.8 2.6E-21 9E-26 205.4 9.7 132 2-136 107-285 (607)
55 2iw3_A Elongation factor 3A; a 99.8 5.3E-21 1.8E-25 210.7 11.4 110 2-123 450-587 (986)
56 2iw3_A Elongation factor 3A; a 99.8 6E-21 2.1E-25 210.3 9.9 47 2-50 688-734 (986)
57 3ux8_A Excinuclease ABC, A sub 99.8 8.3E-21 2.8E-25 204.2 7.7 157 2-171 337-631 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.8 1.6E-19 5.4E-24 189.3 5.3 124 10-135 22-193 (538)
59 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.9E-20 6.6E-25 192.7 -5.4 111 4-123 129-280 (460)
60 3b9q_A Chloroplast SRP recepto 99.7 3.3E-19 1.1E-23 174.1 1.9 117 4-123 91-241 (302)
61 3pih_A Uvrabc system protein A 99.7 7E-18 2.4E-22 185.6 12.2 160 2-174 599-896 (916)
62 3j16_B RLI1P; ribosome recycli 99.7 1.8E-18 6E-23 183.6 6.8 130 3-135 94-277 (608)
63 2r6f_A Excinuclease ABC subuni 99.7 4.7E-18 1.6E-22 186.2 10.2 157 2-171 639-933 (972)
64 4aby_A DNA repair protein RECN 99.7 1.3E-17 4.5E-22 168.7 12.2 69 2-71 50-159 (415)
65 3b85_A Phosphate starvation-in 99.7 9.4E-20 3.2E-24 168.7 -6.0 120 2-133 15-153 (208)
66 2og2_A Putative signal recogni 99.7 2.1E-18 7.3E-23 172.0 3.2 117 4-123 148-298 (359)
67 4gp7_A Metallophosphoesterase; 99.7 1.7E-19 5.7E-24 161.4 -4.4 101 5-120 1-119 (171)
68 2vf7_A UVRA2, excinuclease ABC 99.7 2E-17 6.9E-22 180.5 11.0 67 91-170 737-817 (842)
69 2ygr_A Uvrabc system protein A 99.7 1.7E-17 6E-22 182.3 10.3 68 91-171 870-951 (993)
70 1tq4_A IIGP1, interferon-induc 99.7 6.6E-20 2.3E-24 185.9 -9.2 114 2-123 38-205 (413)
71 2eyu_A Twitching motility prot 99.7 5.1E-17 1.7E-21 155.4 6.6 112 2-135 16-129 (261)
72 2pt7_A CAG-ALFA; ATPase, prote 99.6 3.4E-16 1.2E-20 154.5 7.1 129 2-168 160-291 (330)
73 3sop_A Neuronal-specific septi 99.6 1.3E-17 4.4E-22 160.3 -3.8 109 15-128 4-139 (270)
74 1ye8_A Protein THEP1, hypothet 99.6 1.3E-16 4.3E-21 144.0 1.5 105 15-130 2-131 (178)
75 3aez_A Pantothenate kinase; tr 99.6 1.6E-17 5.4E-22 162.9 -6.3 92 10-117 87-209 (312)
76 2v9p_A Replication protein E1; 99.6 2.6E-17 8.8E-22 160.6 -7.0 106 2-124 115-233 (305)
77 1znw_A Guanylate kinase, GMP k 99.6 8.5E-18 2.9E-22 154.6 -10.4 118 2-123 11-166 (207)
78 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1.3E-14 4.4E-19 145.1 9.4 45 91-135 286-341 (365)
79 2dpy_A FLII, flagellum-specifi 99.5 6.1E-15 2.1E-19 150.9 5.2 142 2-169 147-333 (438)
80 1z6g_A Guanylate kinase; struc 99.5 2.9E-17 9.8E-22 152.7 -11.1 116 2-123 12-166 (218)
81 2jeo_A Uridine-cytidine kinase 99.5 2.6E-15 8.9E-20 141.6 0.9 118 1-137 13-163 (245)
82 1e69_A Chromosome segregation 99.5 2E-14 6.7E-19 141.2 5.3 44 91-134 226-277 (322)
83 3szr_A Interferon-induced GTP- 99.5 1.3E-15 4.6E-20 161.9 -3.3 107 16-123 48-173 (608)
84 1s96_A Guanylate kinase, GMP k 99.5 2.2E-15 7.5E-20 140.3 -1.7 121 9-137 12-138 (219)
85 1rj9_A FTSY, signal recognitio 99.5 2.3E-14 7.7E-19 139.9 4.6 107 12-121 101-240 (304)
86 3jvv_A Twitching mobility prot 99.5 3.8E-14 1.3E-18 141.2 5.7 109 9-136 119-228 (356)
87 4a74_A DNA repair and recombin 99.4 9.8E-16 3.4E-20 141.5 -6.5 108 8-118 20-141 (231)
88 1htw_A HI0065; nucleotide-bind 99.4 7.7E-15 2.6E-19 129.8 -1.1 76 2-82 22-97 (158)
89 2ehv_A Hypothetical protein PH 99.4 3.8E-15 1.3E-19 139.3 -4.0 127 7-135 24-178 (251)
90 2ewv_A Twitching motility prot 99.4 1.3E-13 4.4E-18 138.2 6.3 112 2-135 127-240 (372)
91 1ewq_A DNA mismatch repair pro 99.4 1.1E-14 3.8E-19 158.0 -2.9 121 2-137 568-696 (765)
92 2o8b_B DNA mismatch repair pro 99.4 2E-13 6.8E-18 152.4 6.5 113 2-136 771-909 (1022)
93 2i3b_A HCR-ntpase, human cance 99.4 8.3E-14 2.8E-18 126.8 1.4 140 13-170 1-166 (189)
94 3thx_B DNA mismatch repair pro 99.4 5.8E-13 2E-17 146.8 7.9 124 2-137 662-794 (918)
95 2gza_A Type IV secretion syste 99.3 7.4E-13 2.5E-17 132.2 6.7 109 2-130 164-277 (361)
96 3thx_A DNA mismatch repair pro 99.3 1E-12 3.6E-17 145.1 8.4 102 2-123 651-762 (934)
97 2qag_C Septin-7; cell cycle, c 99.3 9.3E-14 3.2E-18 141.1 -0.4 130 2-139 26-178 (418)
98 1pzn_A RAD51, DNA repair and r 99.3 2.1E-14 7.1E-19 142.8 -5.4 109 7-118 125-247 (349)
99 2yhs_A FTSY, cell division pro 99.3 1.7E-13 5.8E-18 141.1 1.2 116 4-121 284-431 (503)
100 1wb9_A DNA mismatch repair pro 99.3 2.1E-13 7.3E-18 148.7 2.0 123 2-136 597-727 (800)
101 3asz_A Uridine kinase; cytidin 99.3 1.3E-14 4.3E-19 133.0 -7.4 94 10-123 3-139 (211)
102 1tf7_A KAIC; homohexamer, hexa 99.3 2.2E-14 7.4E-19 150.0 -6.6 132 1-134 26-180 (525)
103 1cr0_A DNA primase/helicase; R 99.3 3.8E-13 1.3E-17 129.9 0.8 110 2-114 24-159 (296)
104 2o5v_A DNA replication and rep 99.3 1.8E-11 6.1E-16 122.0 10.8 33 2-35 16-48 (359)
105 1sq5_A Pantothenate kinase; P- 99.2 2.9E-13 9.9E-18 132.1 -3.4 106 11-117 78-199 (308)
106 2bbw_A Adenylate kinase 4, AK4 99.2 2.6E-13 8.7E-18 127.7 -3.7 111 12-124 26-190 (246)
107 2qnr_A Septin-2, protein NEDD5 99.2 2.4E-12 8.3E-17 125.3 3.1 122 2-136 13-163 (301)
108 2obl_A ESCN; ATPase, hydrolase 99.2 6.3E-12 2.2E-16 124.8 5.8 142 2-169 61-244 (347)
109 3e70_C DPA, signal recognition 99.2 3.4E-12 1.2E-16 125.7 3.5 110 10-122 126-262 (328)
110 3qkt_A DNA double-strand break 99.2 3.2E-11 1.1E-15 119.1 8.8 43 92-134 262-309 (339)
111 2qag_B Septin-6, protein NEDD5 99.2 1.3E-12 4.4E-17 132.6 -2.0 128 3-136 30-216 (427)
112 1lw7_A Transcriptional regulat 99.1 2.2E-13 7.4E-18 136.0 -9.6 117 3-123 158-307 (365)
113 1zp6_A Hypothetical protein AT 99.1 8.1E-12 2.8E-16 112.1 1.6 101 9-123 5-140 (191)
114 1tf7_A KAIC; homohexamer, hexa 99.1 1.4E-11 4.6E-16 128.8 3.0 115 7-134 275-412 (525)
115 4ad8_A DNA repair protein RECN 99.1 1E-10 3.6E-15 121.9 8.1 46 91-136 404-455 (517)
116 2w0m_A SSO2452; RECA, SSPF, un 99.1 3.8E-11 1.3E-15 110.3 2.4 49 2-52 11-60 (235)
117 2vf7_A UVRA2, excinuclease ABC 99.0 2E-10 6.8E-15 125.6 6.3 33 91-123 386-420 (842)
118 2cvh_A DNA repair and recombin 99.0 6.6E-10 2.2E-14 101.4 8.4 104 3-118 9-121 (220)
119 1pui_A ENGB, probable GTP-bind 99.0 9.9E-11 3.4E-15 106.2 2.8 118 2-124 17-190 (210)
120 2kjq_A DNAA-related protein; s 99.0 1.5E-10 5.2E-15 101.0 3.3 27 12-38 35-61 (149)
121 3ec2_A DNA replication protein 99.0 1.1E-10 3.7E-15 104.2 1.5 88 7-124 32-123 (180)
122 1nlf_A Regulatory protein REPA 98.9 6.4E-10 2.2E-14 106.4 5.6 102 8-119 25-152 (279)
123 1n0w_A DNA repair protein RAD5 98.9 3.7E-10 1.3E-14 104.7 2.7 102 7-118 18-135 (243)
124 3tr0_A Guanylate kinase, GMP k 98.9 6.7E-11 2.3E-15 107.2 -2.7 68 7-80 1-72 (205)
125 1u0l_A Probable GTPase ENGC; p 98.9 5.4E-10 1.8E-14 108.6 2.0 72 9-83 165-259 (301)
126 3euj_A Chromosome partition pr 98.8 5.6E-10 1.9E-14 115.0 1.0 50 2-54 19-68 (483)
127 2oap_1 GSPE-2, type II secreti 98.8 4.9E-09 1.7E-13 109.0 8.1 124 2-145 249-377 (511)
128 3c8u_A Fructokinase; YP_612366 98.8 5.2E-11 1.8E-15 109.1 -6.5 45 10-54 19-64 (208)
129 3lnc_A Guanylate kinase, GMP k 98.8 1.9E-10 6.5E-15 106.9 -3.6 37 2-38 16-53 (231)
130 2rcn_A Probable GTPase ENGC; Y 98.8 1.8E-09 6.2E-14 107.3 3.2 74 3-78 206-280 (358)
131 1sxj_E Activator 1 40 kDa subu 98.8 4.7E-09 1.6E-13 103.1 5.3 104 16-124 39-155 (354)
132 1ls1_A Signal recognition part 98.8 8.5E-09 2.9E-13 99.9 7.0 101 4-123 91-202 (295)
133 2qm8_A GTPase/ATPase; G protei 98.7 3.4E-10 1.2E-14 111.8 -3.3 70 2-73 44-121 (337)
134 1odf_A YGR205W, hypothetical 3 98.7 1.2E-09 4.1E-14 105.7 0.4 92 11-119 29-169 (290)
135 1t9h_A YLOQ, probable GTPase E 98.7 1.7E-09 5.8E-14 105.4 1.4 70 8-80 168-247 (307)
136 2yv5_A YJEQ protein; hydrolase 98.7 6.8E-09 2.3E-13 100.9 3.6 67 10-80 162-240 (302)
137 1oix_A RAS-related protein RAB 98.6 5.1E-08 1.7E-12 87.5 7.4 108 15-124 31-183 (191)
138 4eun_A Thermoresistant glucoki 98.6 3.9E-09 1.3E-13 95.8 -1.1 66 9-80 25-93 (200)
139 3lda_A DNA repair protein RAD5 98.6 5.2E-09 1.8E-13 105.6 -0.5 104 7-118 172-289 (400)
140 2bdt_A BH3686; alpha-beta prot 98.6 4.4E-09 1.5E-13 94.2 -1.0 64 13-83 2-65 (189)
141 2px0_A Flagellar biosynthesis 98.6 8.2E-08 2.8E-12 93.0 7.3 91 11-122 103-200 (296)
142 3pih_A Uvrabc system protein A 98.5 1.2E-08 4.2E-13 112.4 1.3 33 91-123 471-505 (916)
143 1p9r_A General secretion pathw 98.5 9.1E-09 3.1E-13 104.4 -0.7 79 2-84 158-259 (418)
144 3k1j_A LON protease, ATP-depen 98.5 7.4E-09 2.5E-13 109.9 -1.8 127 2-131 49-230 (604)
145 1vma_A Cell division protein F 98.5 5.6E-08 1.9E-12 94.7 4.5 88 6-113 97-197 (306)
146 1zu4_A FTSY; GTPase, signal re 98.5 4.3E-08 1.5E-12 96.0 3.0 94 3-113 95-202 (320)
147 1qhl_A Protein (cell division 98.5 3.1E-09 1.1E-13 99.2 -5.0 58 7-67 22-91 (227)
148 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1.6E-09 5.4E-14 109.1 -8.0 116 8-123 15-162 (392)
149 1udx_A The GTP-binding protein 98.5 8E-08 2.7E-12 97.4 4.5 34 4-37 148-181 (416)
150 2f9l_A RAB11B, member RAS onco 98.4 2.9E-07 1E-11 82.7 7.3 108 15-124 7-159 (199)
151 2j41_A Guanylate kinase; GMP, 98.4 1.5E-07 5.1E-12 84.9 3.1 30 9-38 2-31 (207)
152 3uie_A Adenylyl-sulfate kinase 98.3 1.4E-08 4.6E-13 92.2 -4.9 47 6-55 18-66 (200)
153 1f2t_B RAD50 ABC-ATPase; DNA d 98.3 9.1E-07 3.1E-11 76.9 6.2 41 94-134 73-118 (148)
154 1in4_A RUVB, holliday junction 98.3 3E-08 1E-12 97.4 -3.8 81 2-84 33-126 (334)
155 2r6f_A Excinuclease ABC subuni 98.3 8.3E-07 2.8E-11 97.7 6.9 51 91-141 511-599 (972)
156 1kgd_A CASK, peripheral plasma 98.3 2.2E-07 7.7E-12 82.8 2.0 39 11-50 3-41 (180)
157 3vaa_A Shikimate kinase, SK; s 98.2 4.7E-07 1.6E-11 81.9 3.2 36 2-37 14-49 (199)
158 1lvg_A Guanylate kinase, GMP k 98.2 3.8E-07 1.3E-11 82.7 2.4 28 11-38 2-29 (198)
159 2dr3_A UPF0273 protein PH0284; 98.2 1.7E-08 5.9E-13 93.5 -6.7 33 3-35 12-45 (247)
160 2x8a_A Nuclear valosin-contain 98.2 3.9E-07 1.3E-11 87.1 2.2 46 2-53 35-80 (274)
161 2f1r_A Molybdopterin-guanine d 98.2 7.3E-08 2.5E-12 86.0 -2.8 92 14-105 3-124 (171)
162 2zr9_A Protein RECA, recombina 98.2 6.4E-07 2.2E-11 88.7 3.3 94 8-115 56-152 (349)
163 3kta_A Chromosome segregation 98.2 7.8E-07 2.7E-11 78.8 3.1 34 4-38 18-51 (182)
164 3a00_A Guanylate kinase, GMP k 98.1 6.2E-07 2.1E-11 80.3 1.9 26 13-38 1-26 (186)
165 4e22_A Cytidylate kinase; P-lo 98.1 2.8E-07 9.7E-12 86.8 -0.8 68 11-80 25-113 (252)
166 1nij_A Hypothetical protein YJ 98.1 5.7E-08 2E-12 94.9 -5.9 41 13-53 4-50 (318)
167 3tau_A Guanylate kinase, GMP k 98.1 1.2E-06 4.1E-11 79.9 3.2 28 11-38 6-33 (208)
168 2ygr_A Uvrabc system protein A 98.1 1.2E-06 4.1E-11 96.8 3.3 33 91-123 528-562 (993)
169 2vp4_A Deoxynucleoside kinase; 98.1 5.8E-07 2E-11 83.3 0.4 43 5-53 12-54 (230)
170 3nwj_A ATSK2; P loop, shikimat 98.0 5.9E-07 2E-11 84.9 -0.5 36 2-37 34-72 (250)
171 2qt1_A Nicotinamide riboside k 98.0 4.6E-06 1.6E-10 75.5 4.8 30 9-38 17-46 (207)
172 1ixz_A ATP-dependent metallopr 98.0 1.3E-06 4.5E-11 81.7 0.9 45 2-52 40-84 (254)
173 1svm_A Large T antigen; AAA+ f 97.9 1.6E-06 5.5E-11 86.7 1.1 42 2-48 158-199 (377)
174 1iy2_A ATP-dependent metallopr 97.9 1.6E-06 5.4E-11 82.5 0.9 45 2-52 64-108 (278)
175 1knq_A Gluconate kinase; ALFA/ 97.9 2.4E-06 8.1E-11 75.1 1.9 37 11-53 6-42 (175)
176 3m6a_A ATP-dependent protease 97.9 2.4E-06 8.1E-11 89.5 1.2 47 3-52 99-145 (543)
177 2ce7_A Cell division protein F 97.9 6.9E-06 2.3E-10 84.6 3.8 78 3-112 41-118 (476)
178 3hr8_A Protein RECA; alpha and 97.8 4.8E-06 1.7E-10 82.6 2.5 93 8-115 56-152 (356)
179 1kag_A SKI, shikimate kinase I 97.8 7.2E-06 2.5E-10 71.7 2.3 27 12-38 3-29 (173)
180 1rz3_A Hypothetical protein rb 97.8 3.7E-06 1.3E-10 76.2 0.4 41 9-51 18-58 (201)
181 3kta_B Chromosome segregation 97.8 3.7E-05 1.3E-09 68.5 6.8 35 90-124 70-108 (173)
182 3ney_A 55 kDa erythrocyte memb 97.8 9.8E-06 3.4E-10 73.8 2.8 30 9-38 15-44 (197)
183 3tqc_A Pantothenate kinase; bi 97.8 3.5E-06 1.2E-10 82.4 -0.2 36 3-38 76-117 (321)
184 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.1E-05 7.1E-10 68.1 4.0 30 4-34 15-44 (149)
185 2dy1_A Elongation factor G; tr 97.7 8.5E-06 2.9E-10 87.3 1.4 115 7-126 3-122 (665)
186 3cr8_A Sulfate adenylyltranfer 97.6 6.5E-06 2.2E-10 86.2 -0.4 43 9-53 365-409 (552)
187 1w1w_A Structural maintenance 97.6 3.1E-05 1.1E-09 78.4 3.3 31 8-38 21-51 (430)
188 2r6a_A DNAB helicase, replicat 97.5 1.2E-05 4.2E-10 82.1 -0.1 111 3-116 193-327 (454)
189 4eaq_A DTMP kinase, thymidylat 97.5 3.1E-05 1.1E-09 71.9 2.0 36 3-38 13-51 (229)
190 2gj8_A MNME, tRNA modification 97.4 0.00015 5.3E-09 63.3 5.7 27 11-37 2-28 (172)
191 3b9p_A CG5977-PA, isoform A; A 97.4 0.00028 9.6E-09 67.1 7.6 77 11-117 52-128 (297)
192 2pez_A Bifunctional 3'-phospho 97.4 8.3E-05 2.8E-09 65.5 3.2 40 11-53 3-44 (179)
193 1mky_A Probable GTP-binding pr 97.4 0.00014 4.9E-09 73.8 5.4 39 15-53 182-230 (439)
194 2p67_A LAO/AO transport system 97.3 4E-05 1.4E-09 75.3 0.9 36 2-37 45-80 (341)
195 3qks_A DNA double-strand break 97.3 0.00012 4.1E-09 66.5 4.0 30 4-34 15-44 (203)
196 1cke_A CK, MSSA, protein (cyti 97.3 9.4E-05 3.2E-09 67.4 3.3 56 12-67 4-73 (227)
197 3cf0_A Transitional endoplasmi 97.3 0.0004 1.4E-08 66.7 7.8 39 9-51 45-83 (301)
198 2dhr_A FTSH; AAA+ protein, hex 97.3 6.8E-05 2.3E-09 77.6 2.4 46 2-53 55-100 (499)
199 1y63_A LMAJ004144AAA protein; 97.3 0.0001 3.5E-09 65.4 3.3 32 5-36 2-33 (184)
200 2qor_A Guanylate kinase; phosp 97.3 0.0001 3.4E-09 66.6 3.1 29 10-38 9-37 (204)
201 1m2o_B GTP-binding protein SAR 97.3 0.00023 7.8E-09 63.2 5.1 48 2-50 13-66 (190)
202 1fnn_A CDC6P, cell division co 97.2 0.00034 1.2E-08 68.6 6.2 27 12-38 41-69 (389)
203 1jjv_A Dephospho-COA kinase; P 97.2 0.00016 5.4E-09 65.1 3.5 21 15-35 4-24 (206)
204 1ypw_A Transitional endoplasmi 97.2 0.00017 5.6E-09 79.0 4.1 40 8-51 233-272 (806)
205 1m7g_A Adenylylsulfate kinase; 97.2 6.4E-05 2.2E-09 68.3 0.5 42 9-52 21-64 (211)
206 4a1f_A DNAB helicase, replicat 97.2 0.00042 1.4E-08 68.1 6.4 92 3-117 36-142 (338)
207 3kl4_A SRP54, signal recogniti 97.2 0.00024 8.1E-09 72.2 4.7 27 12-38 96-122 (433)
208 1f6b_A SAR1; gtpases, N-termin 97.2 0.00011 3.9E-09 65.7 1.9 34 2-36 15-48 (198)
209 3auy_A DNA double-strand break 97.1 0.00034 1.2E-08 69.4 5.0 31 94-124 296-327 (371)
210 2www_A Methylmalonic aciduria 97.1 0.0002 6.7E-09 70.7 3.2 38 11-50 72-109 (349)
211 2ga8_A Hypothetical 39.9 kDa p 97.1 7.9E-05 2.7E-09 73.6 0.0 36 2-37 11-48 (359)
212 3h4m_A Proteasome-activating n 97.1 0.0013 4.3E-08 62.0 8.3 29 10-38 48-76 (285)
213 3bh0_A DNAB-like replicative h 97.1 0.00056 1.9E-08 66.3 5.8 92 3-117 58-166 (315)
214 2if2_A Dephospho-COA kinase; a 97.1 0.00022 7.5E-09 64.0 2.6 21 15-35 3-23 (204)
215 2z4s_A Chromosomal replication 97.0 0.00033 1.1E-08 71.2 4.2 25 13-37 130-154 (440)
216 2yvu_A Probable adenylyl-sulfa 97.0 0.00029 1E-08 62.3 3.2 30 9-38 9-38 (186)
217 1ega_A Protein (GTP-binding pr 97.0 0.00025 8.7E-09 68.3 2.9 26 12-37 7-32 (301)
218 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00051 1.7E-08 68.2 5.1 41 12-52 177-227 (364)
219 3cm0_A Adenylate kinase; ATP-b 97.0 0.00033 1.1E-08 61.6 3.3 27 11-37 2-28 (186)
220 1qhx_A CPT, protein (chloramph 97.0 0.0003 1E-08 61.5 2.9 27 12-38 2-28 (178)
221 2z43_A DNA repair and recombin 97.0 0.0016 5.5E-08 63.3 8.3 29 8-36 102-130 (324)
222 2wjg_A FEOB, ferrous iron tran 97.0 0.00062 2.1E-08 59.5 4.9 22 15-36 9-30 (188)
223 1np6_A Molybdopterin-guanine d 97.0 0.00028 9.5E-09 62.7 2.6 39 13-51 6-45 (174)
224 2wji_A Ferrous iron transport 97.0 0.00044 1.5E-08 59.7 3.7 23 15-37 5-27 (165)
225 3t34_A Dynamin-related protein 97.0 0.00034 1.2E-08 69.0 3.2 32 2-36 26-57 (360)
226 3lxx_A GTPase IMAP family memb 97.0 0.002 6.9E-08 59.2 8.4 24 15-38 31-54 (239)
227 3t61_A Gluconokinase; PSI-biol 96.9 0.00032 1.1E-08 62.9 2.6 25 13-37 18-42 (202)
228 2p5t_B PEZT; postsegregational 96.9 0.0002 6.9E-09 67.0 1.0 41 9-53 28-68 (253)
229 3kb2_A SPBC2 prophage-derived 96.9 0.00049 1.7E-08 59.4 3.4 23 15-37 3-25 (173)
230 1sxj_C Activator 1 40 kDa subu 96.9 0.00013 4.6E-09 71.1 -0.3 37 2-38 33-71 (340)
231 1lv7_A FTSH; alpha/beta domain 96.9 0.00035 1.2E-08 65.1 2.3 32 5-38 39-70 (257)
232 1w1w_A Structural maintenance 96.9 0.00073 2.5E-08 68.2 4.8 34 91-124 340-377 (430)
233 3auy_A DNA double-strand break 96.9 0.00046 1.6E-08 68.4 3.3 30 4-34 17-46 (371)
234 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00059 2E-08 68.4 3.9 47 5-51 14-69 (396)
235 2e87_A Hypothetical protein PH 96.8 0.0014 4.8E-08 64.5 6.5 26 12-37 166-191 (357)
236 2zej_A Dardarin, leucine-rich 96.8 0.00061 2.1E-08 59.9 3.2 23 15-37 4-26 (184)
237 1kht_A Adenylate kinase; phosp 96.8 0.00072 2.5E-08 59.4 3.6 26 12-37 2-27 (192)
238 2qag_A Septin-2, protein NEDD5 96.8 0.00019 6.5E-09 71.1 -0.4 29 3-37 33-61 (361)
239 1q3t_A Cytidylate kinase; nucl 96.8 0.00063 2.2E-08 62.7 3.2 29 9-37 12-40 (236)
240 2rhm_A Putative kinase; P-loop 96.7 0.00065 2.2E-08 59.9 3.0 27 11-37 3-29 (193)
241 3r20_A Cytidylate kinase; stru 96.7 0.00081 2.8E-08 62.6 3.4 24 14-37 10-33 (233)
242 2ffh_A Protein (FFH); SRP54, s 96.7 0.00037 1.3E-08 70.6 1.0 45 4-52 91-135 (425)
243 3trf_A Shikimate kinase, SK; a 96.7 0.00093 3.2E-08 58.7 3.6 26 12-37 4-29 (185)
244 3ice_A Transcription terminati 96.7 0.00056 1.9E-08 68.3 2.3 33 5-37 166-198 (422)
245 2xau_A PRE-mRNA-splicing facto 96.7 1.6E-05 5.4E-10 86.6 -9.8 45 91-135 197-247 (773)
246 2v54_A DTMP kinase, thymidylat 96.7 0.00094 3.2E-08 59.5 3.5 27 11-37 2-28 (204)
247 2ze6_A Isopentenyl transferase 96.7 0.00075 2.6E-08 63.3 3.0 25 14-38 2-26 (253)
248 3lw7_A Adenylate kinase relate 96.7 0.00094 3.2E-08 57.4 3.3 19 15-33 3-21 (179)
249 2plr_A DTMP kinase, probable t 96.6 0.0012 4.2E-08 58.9 3.7 27 12-38 3-29 (213)
250 3iij_A Coilin-interacting nucl 96.6 0.001 3.5E-08 58.3 3.1 27 11-37 9-35 (180)
251 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.3E-08 57.2 3.4 22 14-35 3-24 (181)
252 1j8m_F SRP54, signal recogniti 96.5 0.00027 9.3E-09 68.2 -1.0 43 6-51 92-134 (297)
253 2bwj_A Adenylate kinase 5; pho 96.5 0.00054 1.8E-08 60.8 0.9 32 6-37 5-36 (199)
254 2jaq_A Deoxyguanosine kinase; 96.5 0.0013 4.5E-08 58.3 3.4 24 15-38 2-25 (205)
255 2c95_A Adenylate kinase 1; tra 96.5 0.0013 4.4E-08 58.1 3.2 27 11-37 7-33 (196)
256 2wwf_A Thymidilate kinase, put 96.5 0.0014 4.7E-08 58.8 3.4 28 10-37 7-34 (212)
257 1ex7_A Guanylate kinase; subst 96.5 0.0014 4.7E-08 58.9 3.2 24 15-38 3-26 (186)
258 1gvn_B Zeta; postsegregational 96.5 0.0013 4.6E-08 62.8 3.3 36 11-50 31-66 (287)
259 1via_A Shikimate kinase; struc 96.4 0.0015 5.2E-08 57.0 3.2 23 15-37 6-28 (175)
260 1vht_A Dephospho-COA kinase; s 96.4 0.0017 5.9E-08 58.7 3.7 24 12-35 3-26 (218)
261 1nn5_A Similar to deoxythymidy 96.4 0.0016 5.5E-08 58.4 3.3 28 10-37 6-33 (215)
262 1tev_A UMP-CMP kinase; ploop, 96.4 0.0019 6.4E-08 56.8 3.6 26 12-37 2-27 (196)
263 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0063 2.2E-07 59.0 7.5 28 10-37 42-69 (322)
264 1nks_A Adenylate kinase; therm 96.4 0.0017 5.7E-08 57.0 3.0 24 15-38 3-26 (194)
265 1aky_A Adenylate kinase; ATP:A 96.3 0.0021 7.1E-08 58.4 3.7 27 11-37 2-28 (220)
266 3k53_A Ferrous iron transport 96.3 0.0016 5.6E-08 61.3 3.0 23 15-37 5-27 (271)
267 1uf9_A TT1252 protein; P-loop, 96.3 0.0018 6.1E-08 57.5 3.0 24 13-36 8-31 (203)
268 1gtv_A TMK, thymidylate kinase 96.3 0.00093 3.2E-08 60.0 0.9 24 15-38 2-25 (214)
269 2nzj_A GTP-binding protein REM 96.2 0.0025 8.5E-08 54.6 3.3 23 15-37 6-28 (175)
270 2erx_A GTP-binding protein DI- 96.2 0.0026 8.8E-08 54.1 3.3 22 15-36 5-26 (172)
271 3d8b_A Fidgetin-like protein 1 96.2 0.012 4.1E-07 57.7 8.6 27 11-37 115-141 (357)
272 2vli_A Antibiotic resistance p 96.2 0.0018 6.2E-08 56.6 2.3 27 12-38 4-30 (183)
273 3q72_A GTP-binding protein RAD 96.2 0.0021 7.2E-08 54.6 2.7 22 16-37 5-26 (166)
274 2ged_A SR-beta, signal recogni 96.2 0.0022 7.5E-08 56.3 2.7 24 14-37 49-72 (193)
275 1z2a_A RAS-related protein RAB 96.2 0.0022 7.6E-08 54.4 2.7 22 15-36 7-28 (168)
276 3q85_A GTP-binding protein REM 96.2 0.0029 9.9E-08 53.9 3.4 22 16-37 5-26 (169)
277 1v5w_A DMC1, meiotic recombina 96.1 0.0021 7.3E-08 63.0 2.8 29 8-36 117-145 (343)
278 2dyk_A GTP-binding protein; GT 96.1 0.0026 8.9E-08 53.7 2.9 23 15-37 3-25 (161)
279 1zd8_A GTP:AMP phosphotransfer 96.1 0.0028 9.5E-08 57.9 3.2 27 11-37 5-31 (227)
280 3tw8_B RAS-related protein RAB 96.1 0.0027 9.2E-08 54.6 3.0 23 15-37 11-33 (181)
281 2cdn_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 56.0 3.8 27 11-37 18-44 (201)
282 1kao_A RAP2A; GTP-binding prot 96.1 0.0026 8.7E-08 53.8 2.7 22 15-36 5-26 (167)
283 2z0h_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 55.6 3.4 23 15-37 2-24 (197)
284 1u8z_A RAS-related protein RAL 96.1 0.0027 9.4E-08 53.6 2.8 22 15-36 6-27 (168)
285 1xjc_A MOBB protein homolog; s 96.1 0.0029 1E-07 55.9 3.0 24 14-37 5-28 (169)
286 1z0j_A RAB-22, RAS-related pro 96.0 0.0028 9.7E-08 53.9 2.8 23 15-37 8-30 (170)
287 1zuh_A Shikimate kinase; alpha 96.0 0.0036 1.2E-07 54.1 3.5 25 13-37 7-31 (168)
288 3b1v_A Ferrous iron uptake tra 96.0 0.0032 1.1E-07 59.8 3.3 23 15-37 5-27 (272)
289 2ce2_X GTPase HRAS; signaling 96.0 0.0024 8.4E-08 53.7 2.3 22 15-36 5-26 (166)
290 3lxw_A GTPase IMAP family memb 96.0 0.0033 1.1E-07 58.5 3.4 23 15-37 23-45 (247)
291 1svi_A GTP-binding protein YSX 96.0 0.0029 1E-07 55.5 2.8 23 15-37 25-47 (195)
292 1ek0_A Protein (GTP-binding pr 96.0 0.003 1E-07 53.6 2.8 23 15-37 5-27 (170)
293 3bos_A Putative DNA replicatio 96.0 0.0038 1.3E-07 56.4 3.7 26 12-37 51-76 (242)
294 2lkc_A Translation initiation 96.0 0.0043 1.5E-07 53.3 3.8 25 12-36 7-31 (178)
295 1z08_A RAS-related protein RAB 96.0 0.0031 1.1E-07 53.7 2.9 22 15-36 8-29 (170)
296 3fb4_A Adenylate kinase; psych 96.0 0.0036 1.2E-07 56.4 3.4 23 15-37 2-24 (216)
297 1c1y_A RAS-related protein RAP 96.0 0.003 1E-07 53.5 2.7 22 15-36 5-26 (167)
298 2pbr_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 54.8 3.4 23 15-37 2-24 (195)
299 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0031 1E-07 54.2 2.7 23 15-37 9-31 (177)
300 3a8t_A Adenylate isopentenyltr 96.0 0.0057 1.9E-07 59.9 4.8 27 12-38 39-65 (339)
301 1fzq_A ADP-ribosylation factor 96.0 0.0029 1E-07 55.3 2.6 23 14-36 17-39 (181)
302 1g16_A RAS-related protein SEC 96.0 0.0029 9.9E-08 53.8 2.5 22 16-37 6-27 (170)
303 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.004 1.4E-07 58.3 3.7 26 11-36 2-27 (260)
304 1ky3_A GTP-binding protein YPT 96.0 0.0032 1.1E-07 54.2 2.7 23 15-37 10-32 (182)
305 1ukz_A Uridylate kinase; trans 96.0 0.004 1.4E-07 55.5 3.5 25 13-37 15-39 (203)
306 1zak_A Adenylate kinase; ATP:A 95.9 0.0031 1.1E-07 57.3 2.8 26 12-37 4-29 (222)
307 3pqc_A Probable GTP-binding pr 95.9 0.0032 1.1E-07 54.9 2.8 23 15-37 25-47 (195)
308 3ake_A Cytidylate kinase; CMP 95.9 0.0039 1.3E-07 55.5 3.4 23 15-37 4-26 (208)
309 2iyv_A Shikimate kinase, SK; t 95.9 0.0032 1.1E-07 55.2 2.7 24 14-37 3-26 (184)
310 2qmh_A HPR kinase/phosphorylas 95.9 0.0067 2.3E-07 55.1 4.8 30 8-37 29-58 (205)
311 1e6c_A Shikimate kinase; phosp 95.9 0.0035 1.2E-07 54.2 2.9 24 14-37 3-26 (173)
312 3ihw_A Centg3; RAS, centaurin, 95.9 0.0062 2.1E-07 53.4 4.5 22 15-36 22-43 (184)
313 4b4t_L 26S protease subunit RP 95.9 0.015 5E-07 59.0 7.7 29 10-38 212-240 (437)
314 2cxx_A Probable GTP-binding pr 95.9 0.0034 1.2E-07 54.6 2.7 22 16-37 4-25 (190)
315 3dl0_A Adenylate kinase; phosp 95.9 0.0042 1.4E-07 56.0 3.4 23 15-37 2-24 (216)
316 2hxs_A RAB-26, RAS-related pro 95.9 0.0041 1.4E-07 53.5 3.1 22 15-36 8-29 (178)
317 1r2q_A RAS-related protein RAB 95.9 0.0036 1.2E-07 53.1 2.7 22 15-36 8-29 (170)
318 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0038 1.3E-07 54.2 2.8 23 15-37 6-28 (189)
319 3llm_A ATP-dependent RNA helic 95.9 0.0033 1.1E-07 57.8 2.5 25 10-34 73-97 (235)
320 1qf9_A UMP/CMP kinase, protein 95.9 0.0042 1.4E-07 54.4 3.1 25 13-37 6-30 (194)
321 3clv_A RAB5 protein, putative; 95.9 0.0037 1.3E-07 54.6 2.7 22 15-36 9-30 (208)
322 2fn4_A P23, RAS-related protei 95.9 0.0033 1.1E-07 54.1 2.4 22 15-36 11-32 (181)
323 2pt5_A Shikimate kinase, SK; a 95.9 0.0048 1.7E-07 53.0 3.4 23 15-37 2-24 (168)
324 1jbk_A CLPB protein; beta barr 95.8 0.0054 1.8E-07 52.9 3.7 26 12-37 42-67 (195)
325 1upt_A ARL1, ADP-ribosylation 95.8 0.0038 1.3E-07 53.2 2.7 23 14-36 8-30 (171)
326 4b4t_M 26S protease regulatory 95.8 0.017 5.9E-07 58.5 7.7 29 10-38 212-240 (434)
327 4fcw_A Chaperone protein CLPB; 95.8 0.0043 1.5E-07 58.9 3.2 27 12-38 46-72 (311)
328 3tlx_A Adenylate kinase 2; str 95.8 0.0052 1.8E-07 57.0 3.6 27 11-37 27-53 (243)
329 3bc1_A RAS-related protein RAB 95.8 0.0039 1.3E-07 54.1 2.7 22 15-36 13-34 (195)
330 3t1o_A Gliding protein MGLA; G 95.8 0.0045 1.5E-07 54.0 3.1 24 15-38 16-39 (198)
331 3pfi_A Holliday junction ATP-d 95.8 0.01 3.5E-07 57.2 5.9 25 14-38 56-80 (338)
332 1r8s_A ADP-ribosylation factor 95.8 0.0041 1.4E-07 52.7 2.7 21 16-36 3-23 (164)
333 3umf_A Adenylate kinase; rossm 95.8 0.0052 1.8E-07 56.5 3.5 27 11-37 27-53 (217)
334 2oil_A CATX-8, RAS-related pro 95.8 0.004 1.4E-07 54.6 2.7 23 15-37 27-49 (193)
335 1ko7_A HPR kinase/phosphatase; 95.8 0.0056 1.9E-07 59.4 3.8 33 3-36 135-167 (314)
336 1moz_A ARL1, ADP-ribosylation 95.7 0.0029 9.9E-08 54.8 1.6 24 12-35 17-40 (183)
337 3iby_A Ferrous iron transport 95.7 0.0045 1.5E-07 58.1 2.9 23 15-37 3-25 (256)
338 1z0f_A RAB14, member RAS oncog 95.7 0.0045 1.5E-07 53.0 2.7 23 15-37 17-39 (179)
339 1wf3_A GTP-binding protein; GT 95.7 0.0057 1.9E-07 58.9 3.6 26 11-37 6-31 (301)
340 2g6b_A RAS-related protein RAB 95.7 0.0046 1.6E-07 53.3 2.7 23 15-37 12-34 (180)
341 1jal_A YCHF protein; nucleotid 95.7 0.007 2.4E-07 59.9 4.3 24 13-36 2-25 (363)
342 2qby_A CDC6 homolog 1, cell di 95.7 0.0037 1.3E-07 60.7 2.3 27 11-37 43-69 (386)
343 2a9k_A RAS-related protein RAL 95.7 0.0047 1.6E-07 53.3 2.8 22 15-36 20-41 (187)
344 1ksh_A ARF-like protein 2; sma 95.7 0.0054 1.8E-07 53.4 3.1 26 12-37 17-42 (186)
345 2y8e_A RAB-protein 6, GH09086P 95.7 0.0041 1.4E-07 53.3 2.3 22 15-36 16-37 (179)
346 3be4_A Adenylate kinase; malar 95.7 0.0055 1.9E-07 55.6 3.3 26 12-37 4-29 (217)
347 2efe_B Small GTP-binding prote 95.7 0.005 1.7E-07 53.0 2.9 22 15-36 14-35 (181)
348 3iev_A GTP-binding protein ERA 95.7 0.0059 2E-07 58.8 3.6 24 14-37 11-34 (308)
349 3con_A GTPase NRAS; structural 95.7 0.0049 1.7E-07 53.8 2.8 23 15-37 23-45 (190)
350 3vfd_A Spastin; ATPase, microt 95.6 0.013 4.6E-07 58.0 6.2 28 11-38 146-173 (389)
351 3t5d_A Septin-7; GTP-binding p 95.6 0.0046 1.6E-07 58.3 2.7 23 15-37 10-32 (274)
352 1nrj_B SR-beta, signal recogni 95.6 0.0049 1.7E-07 55.2 2.7 23 15-37 14-36 (218)
353 2zts_A Putative uncharacterize 95.6 0.0078 2.7E-07 54.9 4.1 28 7-34 24-51 (251)
354 3cbq_A GTP-binding protein REM 95.6 0.0046 1.6E-07 54.9 2.4 22 15-36 25-46 (195)
355 2w58_A DNAI, primosome compone 95.6 0.0073 2.5E-07 53.7 3.7 24 14-37 55-78 (202)
356 3a1s_A Iron(II) transport prot 95.6 0.0063 2.1E-07 57.1 3.3 23 15-37 7-29 (258)
357 2bov_A RAla, RAS-related prote 95.6 0.0053 1.8E-07 54.1 2.7 22 15-36 16-37 (206)
358 1zbd_A Rabphilin-3A; G protein 95.6 0.0066 2.2E-07 53.7 3.3 23 15-37 10-32 (203)
359 2bme_A RAB4A, RAS-related prot 95.6 0.0049 1.7E-07 53.4 2.4 23 15-37 12-34 (186)
360 3kkq_A RAS-related protein M-R 95.6 0.0057 1.9E-07 53.0 2.8 22 15-36 20-41 (183)
361 1vg8_A RAS-related protein RAB 95.6 0.0055 1.9E-07 54.2 2.7 23 15-37 10-32 (207)
362 2gf9_A RAS-related protein RAB 95.6 0.0057 1.9E-07 53.5 2.8 23 15-37 24-46 (189)
363 2xb4_A Adenylate kinase; ATP-b 95.6 0.0069 2.3E-07 55.3 3.4 23 15-37 2-24 (223)
364 1uj2_A Uridine-cytidine kinase 95.6 0.0067 2.3E-07 56.4 3.4 24 14-37 23-46 (252)
365 3tkl_A RAS-related protein RAB 95.5 0.0056 1.9E-07 53.6 2.7 23 15-37 18-40 (196)
366 4b4t_J 26S protease regulatory 95.5 0.021 7.1E-07 57.2 7.1 28 11-38 180-207 (405)
367 1jwy_B Dynamin A GTPase domain 95.5 0.006 2.1E-07 58.2 3.0 23 15-37 26-48 (315)
368 2il1_A RAB12; G-protein, GDP, 95.5 0.0063 2.2E-07 53.6 2.9 23 15-37 28-50 (192)
369 2xtp_A GTPase IMAP family memb 95.5 0.0061 2.1E-07 56.7 2.9 23 15-37 24-46 (260)
370 1ak2_A Adenylate kinase isoenz 95.5 0.0081 2.8E-07 55.1 3.7 27 11-37 14-40 (233)
371 3sr0_A Adenylate kinase; phosp 95.5 0.0074 2.5E-07 54.8 3.4 23 15-37 2-24 (206)
372 2gf0_A GTP-binding protein DI- 95.5 0.0053 1.8E-07 53.8 2.4 22 15-36 10-31 (199)
373 3i8s_A Ferrous iron transport 95.5 0.0064 2.2E-07 57.5 3.1 23 15-37 5-27 (274)
374 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0061 2.1E-07 52.7 2.7 22 15-36 7-28 (186)
375 3v9p_A DTMP kinase, thymidylat 95.5 0.0062 2.1E-07 56.3 2.8 31 8-38 20-50 (227)
376 2grj_A Dephospho-COA kinase; T 95.5 0.0077 2.6E-07 54.1 3.4 24 13-36 12-35 (192)
377 1m7b_A RND3/RHOE small GTP-bin 95.5 0.0055 1.9E-07 53.5 2.3 22 15-36 9-30 (184)
378 2fg5_A RAB-22B, RAS-related pr 95.5 0.0058 2E-07 53.7 2.5 23 15-37 25-47 (192)
379 2p65_A Hypothetical protein PF 95.5 0.0068 2.3E-07 52.3 2.9 26 12-37 42-67 (187)
380 3bwd_D RAC-like GTP-binding pr 95.5 0.0077 2.6E-07 51.9 3.2 23 15-37 10-32 (182)
381 4b4t_H 26S protease regulatory 95.5 0.024 8.2E-07 57.7 7.3 29 10-38 240-268 (467)
382 1z06_A RAS-related protein RAB 95.4 0.0065 2.2E-07 53.1 2.7 22 15-36 22-43 (189)
383 2cjw_A GTP-binding protein GEM 95.4 0.0063 2.2E-07 53.9 2.7 21 15-35 8-28 (192)
384 2qu8_A Putative nucleolar GTP- 95.4 0.0072 2.5E-07 54.9 3.1 23 14-36 30-52 (228)
385 4dhe_A Probable GTP-binding pr 95.4 0.0037 1.3E-07 56.2 1.1 23 15-37 31-53 (223)
386 4bas_A ADP-ribosylation factor 95.4 0.0072 2.5E-07 53.0 3.0 24 14-37 18-41 (199)
387 3zvl_A Bifunctional polynucleo 95.4 0.0068 2.3E-07 61.0 3.1 27 11-37 256-282 (416)
388 2i1q_A DNA repair and recombin 95.4 0.0081 2.8E-07 57.9 3.6 28 8-35 93-120 (322)
389 1zj6_A ADP-ribosylation factor 95.4 0.0071 2.4E-07 52.8 2.9 24 13-36 16-39 (187)
390 2f7s_A C25KG, RAS-related prot 95.4 0.015 5.3E-07 51.9 5.2 23 15-37 27-49 (217)
391 3dm5_A SRP54, signal recogniti 95.4 0.029 9.9E-07 56.9 7.7 26 12-37 99-124 (443)
392 1ltq_A Polynucleotide kinase; 95.4 0.0081 2.8E-07 57.0 3.4 23 14-36 3-25 (301)
393 2h57_A ADP-ribosylation factor 95.4 0.0055 1.9E-07 53.6 2.1 23 15-37 23-45 (190)
394 2o52_A RAS-related protein RAB 95.4 0.0073 2.5E-07 53.6 2.9 23 15-37 27-49 (200)
395 2dby_A GTP-binding protein; GD 95.4 0.0063 2.2E-07 60.4 2.7 21 16-36 4-24 (368)
396 3oes_A GTPase rhebl1; small GT 95.4 0.006 2.1E-07 54.1 2.3 23 15-37 26-48 (201)
397 1x3s_A RAS-related protein RAB 95.4 0.0072 2.5E-07 52.7 2.8 23 15-37 17-39 (195)
398 2a5j_A RAS-related protein RAB 95.4 0.0071 2.4E-07 53.1 2.7 23 15-37 23-45 (191)
399 1zd9_A ADP-ribosylation factor 95.3 0.0071 2.4E-07 53.0 2.7 22 15-36 24-45 (188)
400 1e4v_A Adenylate kinase; trans 95.3 0.0079 2.7E-07 54.3 3.0 23 15-37 2-24 (214)
401 3t5g_A GTP-binding protein RHE 95.3 0.0064 2.2E-07 52.5 2.3 21 15-35 8-28 (181)
402 1l8q_A Chromosomal replication 95.3 0.0058 2E-07 58.8 2.2 26 12-37 36-61 (324)
403 2atv_A RERG, RAS-like estrogen 95.3 0.0074 2.5E-07 53.2 2.7 22 15-36 30-51 (196)
404 2h17_A ADP-ribosylation factor 95.3 0.0067 2.3E-07 52.7 2.4 22 15-36 23-44 (181)
405 3dz8_A RAS-related protein RAB 95.3 0.0065 2.2E-07 53.3 2.3 23 15-37 25-47 (191)
406 3cph_A RAS-related protein SEC 95.3 0.0073 2.5E-07 53.6 2.7 23 14-36 21-43 (213)
407 3reg_A RHO-like small GTPase; 95.3 0.0074 2.5E-07 53.0 2.7 23 15-37 25-47 (194)
408 2aka_B Dynamin-1; fusion prote 95.3 0.0072 2.5E-07 57.1 2.8 23 15-37 28-50 (299)
409 4ag6_A VIRB4 ATPase, type IV s 95.3 0.0081 2.8E-07 59.6 3.2 26 12-37 34-59 (392)
410 2bcg_Y Protein YP2, GTP-bindin 95.3 0.0066 2.3E-07 53.9 2.3 22 15-36 10-31 (206)
411 3llu_A RAS-related GTP-binding 95.3 0.0096 3.3E-07 52.6 3.4 24 15-38 22-45 (196)
412 2wsm_A Hydrogenase expression/ 95.3 0.0072 2.5E-07 54.3 2.6 24 14-37 31-54 (221)
413 2p5s_A RAS and EF-hand domain 95.3 0.0081 2.8E-07 53.1 2.9 24 14-37 29-52 (199)
414 2q3h_A RAS homolog gene family 95.3 0.0094 3.2E-07 52.6 3.3 25 13-37 20-44 (201)
415 2f6r_A COA synthase, bifunctio 95.3 0.0083 2.8E-07 57.0 3.0 22 14-35 76-97 (281)
416 1njg_A DNA polymerase III subu 95.3 0.011 3.7E-07 52.9 3.7 23 15-37 47-69 (250)
417 2ius_A DNA translocase FTSK; n 95.2 0.0078 2.7E-07 62.2 2.9 30 6-35 160-189 (512)
418 2iwr_A Centaurin gamma 1; ANK 95.2 0.0063 2.2E-07 52.4 1.9 22 15-36 9-30 (178)
419 4edh_A DTMP kinase, thymidylat 95.2 0.011 3.9E-07 53.9 3.6 28 11-38 4-31 (213)
420 2fu5_C RAS-related protein RAB 95.2 0.0061 2.1E-07 52.8 1.6 22 15-36 10-31 (183)
421 2j1l_A RHO-related GTP-binding 95.2 0.0094 3.2E-07 53.6 2.9 22 15-36 36-57 (214)
422 2q6t_A DNAB replication FORK h 95.2 0.0063 2.1E-07 61.7 2.0 34 3-36 190-223 (444)
423 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.011 3.9E-07 54.4 3.6 27 11-37 37-63 (262)
424 2ew1_A RAS-related protein RAB 95.2 0.0076 2.6E-07 53.9 2.3 22 15-36 28-49 (201)
425 3c5c_A RAS-like protein 12; GD 95.2 0.009 3.1E-07 52.4 2.7 22 15-36 23-44 (187)
426 2b6h_A ADP-ribosylation factor 95.2 0.0086 2.9E-07 52.9 2.6 24 13-36 29-52 (192)
427 1a7j_A Phosphoribulokinase; tr 95.1 0.0057 1.9E-07 58.5 1.5 26 12-37 4-29 (290)
428 3d3q_A TRNA delta(2)-isopenten 95.1 0.0082 2.8E-07 58.9 2.6 25 14-38 8-32 (340)
429 2fv8_A H6, RHO-related GTP-bin 95.1 0.0081 2.8E-07 53.6 2.4 23 15-37 27-49 (207)
430 3crm_A TRNA delta(2)-isopenten 95.1 0.0084 2.9E-07 58.4 2.6 25 14-38 6-30 (323)
431 4b4t_I 26S protease regulatory 95.1 0.034 1.2E-06 56.1 7.0 28 11-38 214-241 (437)
432 1p5z_B DCK, deoxycytidine kina 95.1 0.0076 2.6E-07 56.3 2.1 28 11-38 22-49 (263)
433 2fh5_B SR-beta, signal recogni 95.1 0.0094 3.2E-07 53.2 2.7 22 15-36 9-30 (214)
434 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4.1E-07 57.1 3.6 26 13-38 3-28 (322)
435 1gwn_A RHO-related GTP-binding 95.0 0.0087 3E-07 53.7 2.3 23 15-37 30-52 (205)
436 2h92_A Cytidylate kinase; ross 95.0 0.0081 2.8E-07 54.1 2.1 25 13-37 3-27 (219)
437 2r62_A Cell division protease 95.0 0.0037 1.3E-07 58.3 -0.3 22 16-37 47-68 (268)
438 2g3y_A GTP-binding protein GEM 95.0 0.013 4.3E-07 53.3 3.3 22 15-36 39-60 (211)
439 4djt_A GTP-binding nuclear pro 95.0 0.006 2E-07 54.7 1.0 22 15-36 13-34 (218)
440 2gco_A H9, RHO-related GTP-bin 95.0 0.0093 3.2E-07 52.9 2.3 22 15-36 27-48 (201)
441 3def_A T7I23.11 protein; chlor 94.9 0.012 4E-07 55.1 2.9 23 15-37 38-60 (262)
442 1h65_A Chloroplast outer envel 94.9 0.011 3.9E-07 55.4 2.9 23 15-37 41-63 (270)
443 3lv8_A DTMP kinase, thymidylat 94.9 0.014 4.6E-07 54.3 3.3 28 11-38 25-52 (236)
444 1u94_A RECA protein, recombina 94.9 0.016 5.6E-07 57.1 4.0 29 8-36 58-86 (356)
445 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.015 5.2E-07 56.6 3.7 28 8-35 118-145 (331)
446 3tqf_A HPR(Ser) kinase; transf 94.9 0.018 6.2E-07 51.1 3.8 30 7-36 10-39 (181)
447 1sxj_D Activator 1 41 kDa subu 94.8 0.0054 1.8E-07 59.2 0.4 22 16-37 61-82 (353)
448 3tmk_A Thymidylate kinase; pho 94.8 0.015 5.1E-07 53.3 3.3 98 11-123 3-104 (216)
449 2atx_A Small GTP binding prote 94.8 0.011 3.8E-07 51.8 2.4 22 15-36 20-41 (194)
450 3n70_A Transport activator; si 94.8 0.015 5E-07 49.3 3.0 27 11-37 22-48 (145)
451 2x77_A ADP-ribosylation factor 94.8 0.0086 2.9E-07 52.2 1.6 25 12-36 21-45 (189)
452 1ypw_A Transitional endoplasmi 94.7 0.0057 1.9E-07 66.8 0.3 32 7-38 505-536 (806)
453 2yc2_C IFT27, small RAB-relate 94.7 0.0063 2.2E-07 53.7 0.5 22 15-36 22-43 (208)
454 3syl_A Protein CBBX; photosynt 94.7 0.016 5.5E-07 54.9 3.4 27 11-37 65-91 (309)
455 3cnl_A YLQF, putative uncharac 94.7 0.015 5E-07 54.8 3.0 25 14-38 100-124 (262)
456 3cpj_B GTP-binding protein YPT 94.7 0.014 4.8E-07 52.7 2.8 23 15-37 15-37 (223)
457 4tmk_A Protein (thymidylate ki 94.7 0.017 5.8E-07 52.7 3.3 27 12-38 2-28 (213)
458 2ocp_A DGK, deoxyguanosine kin 94.7 0.017 5.8E-07 53.1 3.3 26 13-38 2-27 (241)
459 3ld9_A DTMP kinase, thymidylat 94.7 0.019 6.6E-07 52.8 3.6 28 11-38 19-46 (223)
460 2hup_A RAS-related protein RAB 94.7 0.013 4.4E-07 52.1 2.4 22 15-36 31-52 (201)
461 3cf2_A TER ATPase, transitiona 94.6 0.052 1.8E-06 59.0 7.4 29 10-38 235-263 (806)
462 2hf9_A Probable hydrogenase ni 94.6 0.017 5.8E-07 52.0 3.0 23 14-36 39-61 (226)
463 2orw_A Thymidine kinase; TMTK, 94.6 0.02 6.7E-07 50.9 3.3 23 12-34 2-24 (184)
464 4dcu_A GTP-binding protein ENG 94.5 0.014 4.9E-07 59.2 2.7 22 15-36 25-46 (456)
465 3foz_A TRNA delta(2)-isopenten 94.5 0.022 7.4E-07 55.2 3.7 26 13-38 10-35 (316)
466 4gzl_A RAS-related C3 botulinu 94.5 0.015 5.2E-07 51.8 2.4 23 14-36 31-53 (204)
467 3q3j_B RHO-related GTP-binding 94.5 0.017 5.7E-07 52.0 2.7 22 15-36 29-50 (214)
468 1sky_E F1-ATPase, F1-ATP synth 94.4 0.021 7E-07 58.4 3.5 29 9-37 147-175 (473)
469 2j0v_A RAC-like GTP-binding pr 94.4 0.015 5.3E-07 51.7 2.3 22 15-36 11-32 (212)
470 3t15_A Ribulose bisphosphate c 94.4 0.019 6.6E-07 54.7 3.1 27 11-37 34-60 (293)
471 3gmt_A Adenylate kinase; ssgci 94.4 0.021 7E-07 52.9 3.2 23 15-37 10-32 (230)
472 2chg_A Replication factor C sm 94.4 0.021 7.3E-07 50.3 3.1 23 15-37 40-62 (226)
473 2v1u_A Cell division control p 94.4 0.017 5.7E-07 56.1 2.7 27 11-37 42-68 (387)
474 1d2n_A N-ethylmaleimide-sensit 94.3 0.022 7.6E-07 53.2 3.3 27 11-37 62-88 (272)
475 3eie_A Vacuolar protein sortin 94.3 0.025 8.6E-07 54.5 3.6 27 11-37 49-75 (322)
476 3uk6_A RUVB-like 2; hexameric 94.3 0.023 7.7E-07 55.3 3.3 28 11-38 68-95 (368)
477 2qgz_A Helicase loader, putati 94.2 0.028 9.6E-07 54.1 3.7 25 13-37 152-176 (308)
478 3eph_A TRNA isopentenyltransfe 94.2 0.024 8.2E-07 56.8 3.2 26 13-38 2-27 (409)
479 1ofh_A ATP-dependent HSL prote 94.1 0.025 8.5E-07 53.3 3.2 26 12-37 49-74 (310)
480 2x2e_A Dynamin-1; nitration, h 94.1 0.017 5.8E-07 56.6 2.0 23 15-37 33-55 (353)
481 3hws_A ATP-dependent CLP prote 94.0 0.026 8.9E-07 55.2 3.2 26 12-37 50-75 (363)
482 1puj_A YLQF, conserved hypothe 94.0 0.03 1E-06 53.2 3.5 24 14-37 121-144 (282)
483 3bgw_A DNAB-like replicative h 94.0 0.017 5.9E-07 58.6 1.8 34 3-36 187-220 (444)
484 1xp8_A RECA protein, recombina 93.9 0.033 1.1E-06 55.1 3.6 28 8-35 69-96 (366)
485 3r7w_A Gtpase1, GTP-binding pr 93.9 0.032 1.1E-06 53.5 3.5 24 13-36 3-26 (307)
486 3th5_A RAS-related C3 botulinu 92.9 0.011 3.6E-07 52.5 0.0 22 15-36 32-53 (204)
487 3l0i_B RAS-related protein RAB 93.8 0.0076 2.6E-07 53.3 -1.0 23 15-37 35-57 (199)
488 1wxq_A GTP-binding protein; st 93.8 0.027 9.4E-07 56.3 2.9 22 16-37 3-24 (397)
489 3p32_A Probable GTPase RV1496/ 93.8 0.036 1.2E-06 54.4 3.7 26 12-37 78-103 (355)
490 2hjg_A GTP-binding protein ENG 93.8 0.026 8.9E-07 56.9 2.7 22 15-36 5-26 (436)
491 4a9a_A Ribosome-interacting GT 93.7 0.043 1.5E-06 54.5 4.2 38 15-52 74-120 (376)
492 3co5_A Putative two-component 93.7 0.018 6.2E-07 48.6 1.3 27 11-37 25-51 (143)
493 1mky_A Probable GTP-binding pr 93.7 0.062 2.1E-06 54.2 5.4 23 15-37 3-25 (439)
494 2qby_B CDC6 homolog 3, cell di 93.7 0.034 1.2E-06 54.1 3.4 26 12-37 44-69 (384)
495 4b4t_K 26S protease regulatory 93.7 0.031 1.1E-06 56.5 3.1 28 11-38 204-231 (428)
496 3gj0_A GTP-binding nuclear pro 93.6 0.021 7.1E-07 51.3 1.5 22 15-36 17-39 (221)
497 1f5n_A Interferon-induced guan 93.6 0.031 1E-06 58.8 2.9 26 12-37 37-62 (592)
498 2qp9_X Vacuolar protein sortin 93.5 0.035 1.2E-06 54.4 3.1 27 11-37 82-108 (355)
499 3pvs_A Replication-associated 93.5 0.024 8.2E-07 57.6 1.9 29 10-38 45-75 (447)
500 2b8t_A Thymidine kinase; deoxy 93.5 0.045 1.5E-06 50.3 3.6 29 9-37 8-36 (223)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=9e-32 Score=269.92 Aligned_cols=137 Identities=31% Similarity=0.469 Sum_probs=120.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|||+++++||+++|+||||||||||||+|+|+++ +.+|+|.++|++... ..++.++||+|+..++|++||+||
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~en 95 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAEN 95 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHH
Confidence 7899999999999999999999999999999999987 478999999998753 345679999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--- 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--- 123 (413)
+.|....+ .+ +|||+|||+|+.+|++|+|||||||||+..+.++
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (381)
T 3rlf_A 96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175 (381)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 99875432 11 1899999999999999999999999999999877
Q ss_pred -----------------------------HHhcCCcEEEecCcchH
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~ 140 (413)
++|++|+++..|+++++
T Consensus 176 l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 47788888888888775
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=4.3e-32 Score=270.48 Aligned_cols=120 Identities=33% Similarity=0.510 Sum_probs=106.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc----C--hhccccEEEEecCCccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL----S--RTVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~----~--~~~~~~~~~v~q~~~~~~~lT 75 (413)
+|+|||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++. . +..++.+|||+|+..++|++|
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 7899999999999999999999999999999999987 4789999999876 2 234567999999999999999
Q ss_pred HHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 VTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 v~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
|+||+.|....+ +. +|||+|||+|+.+|++|+|||||||||+.++.+
T Consensus 97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 999998854321 10 189999999999999999999999999999987
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
+
T Consensus 177 l 177 (359)
T 3fvq_A 177 I 177 (359)
T ss_dssp H
T ss_pred H
Confidence 7
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.2e-31 Score=253.32 Aligned_cols=154 Identities=29% Similarity=0.433 Sum_probs=123.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~ 73 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... . .++.++||+|++.+++.
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 7999999999999999999999999999999999987 478999999987642 1 13469999999999999
Q ss_pred CCHHHHHHHHHHcC----Cc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 74 LTVTETLVFIALFR----LP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 74 lTv~e~l~f~~~~~----~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
+||+||+.+....+ .+ +||++||++|+.+|++|+|||||+|||
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99999998864321 00 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 117 STIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 117 ~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.++.+++ +..+ |.++..-+ |+... ...||.++.+.+|+..
T Consensus 178 ~~~~~~i~~~l~~l~~~~g~tvi~vt------------Hd~~~-~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 178 SKTGEKIMQLLKKLNEEDGKTVVVVT------------HDINV-ARFGERIIYLKDGEVE 224 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEC------------SCHHH-HTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEc------------CCHHH-HHhCCEEEEEECCEEE
Confidence 99999984 2233 77776633 33222 2347777777777654
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=8.1e-32 Score=268.74 Aligned_cols=120 Identities=24% Similarity=0.362 Sum_probs=107.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|||+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. ..++.+|||+|+..+++.+
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 7999999999999999999999999999999999987 478999999998642 2356799999999999999
Q ss_pred CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+||+.+..... .+ +|||+|||+|+.+|++|+|||||||||+.++.
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 9999999875421 11 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
++
T Consensus 201 ~i 202 (366)
T 3tui_C 201 SI 202 (366)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=2.9e-31 Score=264.41 Aligned_cols=121 Identities=29% Similarity=0.518 Sum_probs=107.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..+++++||+|
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYD 106 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHH
Confidence 37999999999999999999999999999999999987 478999999988643 34678999999999999999999
Q ss_pred HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
|+.|....+ .+ +|||+|||+|+.+|++|+|||||+|||+.++.++
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 184 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999865321 11 1899999999999999999999999999999877
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=2.3e-31 Score=255.38 Aligned_cols=133 Identities=30% Similarity=0.506 Sum_probs=111.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCccCCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYLHLT 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~~lT 75 (413)
+|+|||+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|++.. ...++.++||+|+..+++.+|
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 116 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT 116 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence 7899999999999999999999999999999999987 46899999998763 123557999999999999999
Q ss_pred HHHHHHHHH-Hc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 76 VTETLVFIA-LF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 76 v~e~l~f~~-~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
|+||+.+.. .. +.+ +||++||++|+.+|++++|||||+|||+.++.
T Consensus 117 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 117 VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 999998853 21 111 18999999999999999999999999999999
Q ss_pred HHH-----HhcCCcEEEecC
Q 048308 122 QIL-----LNSEGNSLHVGK 136 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G~ 136 (413)
.+. +.++|.++..-+
T Consensus 197 ~~~~~l~~l~~~g~tvi~vt 216 (263)
T 2olj_A 197 EVLSVMKQLANEGMTMVVVT 216 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEc
Confidence 883 223576665533
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=2.9e-31 Score=256.20 Aligned_cols=160 Identities=30% Similarity=0.432 Sum_probs=130.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h----hccccEEEEecCC-ccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R----TVKRKTGFVAHSN-VFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~----~~~~~~~~v~q~~-~~~~~l 74 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|++.. + ..++.++||+|+. ..+..+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~ 100 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA 100 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccC
Confidence 7999999999999999999999999999999999987 47899999998862 1 2456799999985 344579
Q ss_pred CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+|++.|..... .+ +||++||++|+.+|++|+|||||+|||+.++.
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 9999999875421 11 18999999999999999999999999999999
Q ss_pred HHH-----Hh-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 122 QIL-----LN-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 122 ~i~-----ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
.++ +. .+|.++.. +.|+.......||.++.+.+|+....++.
T Consensus 181 ~i~~~l~~l~~~~g~tvi~------------vtHdl~~~~~~~drv~~l~~G~i~~~g~~ 228 (275)
T 3gfo_A 181 EIMKLLVEMQKELGITIII------------ATHDIDIVPLYCDNVFVMKEGRVILQGNP 228 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEE------------EESCCSSGGGGCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhhCCCEEEE------------EecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 884 22 34777666 34677776778999999998887654443
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=4.1e-31 Score=253.54 Aligned_cols=155 Identities=28% Similarity=0.441 Sum_probs=121.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----------------hhccccEEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----------------RTVKRKTGFV 64 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----------------~~~~~~~~~v 64 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ...++.++||
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 98 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 98 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEE
Confidence 7899999999999999999999999999999999987 47899999998764 1234579999
Q ss_pred ecCCccCCCCCHHHHHHHHH-Hc-CCc---------------------------------hhHHHHHHHHhhCCCEEEEe
Q 048308 65 AHSNVFYLHLTVTETLVFIA-LF-RLP---------------------------------IKRVSRAQELLINPSLLFLD 109 (413)
Q Consensus 65 ~q~~~~~~~lTv~e~l~f~~-~~-~~~---------------------------------~krvsia~~l~~~p~llllD 109 (413)
+|+..+++.+||+||+.+.. .. +.+ +||++||++|+.+|++++||
T Consensus 99 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 178 (262)
T 1b0u_A 99 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 178 (262)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999998843 11 110 17999999999999999999
Q ss_pred CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
|||+|||+.++..+. +..+|.++..-+. +.......||.++.+.+|+..
T Consensus 179 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH------------d~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 179 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH------------EMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS------------CHHHHHHHCSEEEEEETTEEE
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC------------CHHHHHHhCCEEEEEECCEEE
Confidence 999999999999884 2235766555332 222222345666666666543
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=4.5e-31 Score=252.42 Aligned_cols=155 Identities=27% Similarity=0.415 Sum_probs=124.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++.+||+|
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 107 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE 107 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHH
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHH
Confidence 7899999999999999999999999999999999987 478999999987642 34567999999999999999999
Q ss_pred HHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 79 TLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 79 ~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
|+.+.... +.+ +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 108 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 187 (256)
T 1vpl_A 108 YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187 (256)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHH
Confidence 99885421 111 18999999999999999999999999999999883
Q ss_pred ----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 ----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 ----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+..+|.++..-+ |+.......||.++.+.+|+..
T Consensus 188 ~l~~l~~~g~tiiivt------------Hd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 188 ILKQASQEGLTILVSS------------HNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HHHHHHHTTCEEEEEE------------CCHHHHTTTCSEEEEEETTEEE
T ss_pred HHHHHHhCCCEEEEEc------------CCHHHHHHHCCEEEEEECCEEE
Confidence 223577665533 2222234456777766666654
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=4e-31 Score=263.88 Aligned_cols=138 Identities=32% Similarity=0.495 Sum_probs=119.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..+++++||+||
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 95 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFEN 95 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 478999999988743 345679999999999999999999
Q ss_pred HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308 80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--- 123 (413)
Q Consensus 80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--- 123 (413)
+.|....+ +. +|||+|||+|+.+|++|+|||||+|||+.++.++
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 175 (359)
T 2yyz_A 96 IAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE 175 (359)
T ss_dssp HHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 98854221 10 1899999999999999999999999999999877
Q ss_pred -----------------------------HHhcCCcEEEecCcchHh
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGVM 141 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~~ 141 (413)
++|++|+++..|+++++.
T Consensus 176 l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 467788888888877653
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=2.5e-31 Score=255.56 Aligned_cols=157 Identities=26% Similarity=0.337 Sum_probs=124.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|++... ..++.++|++|+..+++.+||+
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVS 103 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHH
Confidence 79999999999999999999999999999999999874 67999999998643 3455799999999888899999
Q ss_pred HHHHHHHHc-----------------CCc--------------hhHHHHHHHHhh------CCCEEEEeCCCCCCCHHHH
Q 048308 78 ETLVFIALF-----------------RLP--------------IKRVSRAQELLI------NPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 78 e~l~f~~~~-----------------~~~--------------~krvsia~~l~~------~p~llllDEPtsgLD~~~~ 120 (413)
||+.+.... ++. +||++||++|+. +|++|+|||||+|||+.++
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~ 183 (266)
T 4g1u_C 104 EVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183 (266)
T ss_dssp HHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred HHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence 999875321 110 189999999999 9999999999999999999
Q ss_pred HHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 121 KQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 121 ~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
.+++ +..+ |.++..-+ |+.......||.++.+.+|+....
T Consensus 184 ~~i~~~l~~l~~~~~~tvi~vt------------Hdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 184 QHTLRLLRQLTRQEPLAVCCVL------------HDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEC------------SCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEE------------cCHHHHHHhCCEEEEEECCEEEEE
Confidence 9883 2233 44554422 333333345777777777766543
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=5.3e-31 Score=247.06 Aligned_cols=133 Identities=35% Similarity=0.487 Sum_probs=112.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hc-cccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TV-KRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~-~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... .. ++.++||+|+..+++.
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 7899999999999999999999999999999999987 468999999987642 11 2569999999999999
Q ss_pred CCHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+||+.+..... .+ +||++||++|+.+|++++|||||+|||+.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 99999998854221 10 1899999999999999999999999999999
Q ss_pred HHHH-----HhcCCcEEEecC
Q 048308 121 KQIL-----LNSEGNSLHVGK 136 (413)
Q Consensus 121 ~~i~-----ll~~G~~v~~G~ 136 (413)
..+. +.++|.++..-+
T Consensus 177 ~~~~~~l~~l~~~g~tvi~vt 197 (224)
T 2pcj_A 177 KRVMDIFLKINEGGTSIVMVT 197 (224)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEc
Confidence 9884 224587776644
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.4e-31 Score=263.21 Aligned_cols=137 Identities=36% Similarity=0.570 Sum_probs=120.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..+++++||+||
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 95 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKN 95 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHH
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHH
Confidence 7899999999999999999999999999999999987 478999999988643 345679999999999999999999
Q ss_pred HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308 80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--- 123 (413)
Q Consensus 80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--- 123 (413)
+.|....+ .+ +|||+|||+|+.+|++|+|||||||||+.++.++
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 175 (362)
T 2it1_A 96 IAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE 175 (362)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 99865321 11 1899999999999999999999999999999877
Q ss_pred -----------------------------HHhcCCcEEEecCcchH
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~ 140 (413)
++|++|+++..|+++++
T Consensus 176 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 176 LKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 46778888888887765
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=8e-31 Score=263.11 Aligned_cols=138 Identities=28% Similarity=0.477 Sum_probs=120.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~ 73 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..++++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 95 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH 95 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC
Confidence 7899999999999999999999999999999999987 478999999987532 235679999999999999
Q ss_pred CCHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 74 LTVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 74 lTv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
+||+||+.|....+ .+ +|||+|||+|+.+|++|+|||||+|||+.++
T Consensus 96 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 175 (372)
T 1g29_1 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175 (372)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 99999999875321 11 1899999999999999999999999999999
Q ss_pred HHH--------------------------------HHhcCCcEEEecCcchHh
Q 048308 121 KQI--------------------------------LLNSEGNSLHVGKGDGVM 141 (413)
Q Consensus 121 ~~i--------------------------------~ll~~G~~v~~G~~~~~~ 141 (413)
.++ ++|++|+++..|+++++.
T Consensus 176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 877 477889999999887763
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5e-31 Score=249.76 Aligned_cols=155 Identities=25% Similarity=0.451 Sum_probs=121.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... . .++.++||+|+..+++.+||
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 7899999999999999999999999999999999987 468999999987642 1 24469999999999999999
Q ss_pred HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+||+.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l 178 (240)
T 1ji0_A 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 9999874210 010 1899999999999999999999999999999988
Q ss_pred H-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 124 L-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 124 ~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
. +.++|+++..-+. +.......||.++.+.+|+..
T Consensus 179 ~~~l~~~~~~g~tvi~vtH------------d~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 179 FEVIQKINQEGTTILLVEQ------------NALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHHHHHHHHTTCCEEEEES------------CHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHCCCEEEEEec------------CHHHHHHhCCEEEEEECCEEE
Confidence 4 2235765555332 221122345666666666554
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=4.3e-31 Score=252.72 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=129.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++.+||
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence 7899999999999999999999999999999999987 468999999987642 234579999999999999999
Q ss_pred HHHHHHHHHc---C-----------Cc--------------------------------hhHHHHHHHHhhCCCEEEEeC
Q 048308 77 TETLVFIALF---R-----------LP--------------------------------IKRVSRAQELLINPSLLFLDE 110 (413)
Q Consensus 77 ~e~l~f~~~~---~-----------~~--------------------------------~krvsia~~l~~~p~llllDE 110 (413)
+||+.+.... + .+ +||++||++|+.+|++++|||
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE 179 (257)
T 1g6h_A 100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179 (257)
T ss_dssp HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999875322 1 11 189999999999999999999
Q ss_pred CCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 111 PASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 111 PtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
||+|||+.++..++ +..+|.++.. ..|+.......||.++.+.+|....
T Consensus 180 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~------------vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 180 PIAGVAPGLAHDIFNHVLELKAKGITFLI------------IEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEE------------ECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEE------------EecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999984 2235777666 3467666677889988888887643
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=4.4e-31 Score=263.36 Aligned_cols=120 Identities=33% Similarity=0.486 Sum_probs=106.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..+++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 7999999999999999999999999999999999987 478999999987532 3467899999999999999
Q ss_pred CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308 75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~ 121 (413)
||+||+.|....+ .+ +||++|||+|+.+|++|+|||||+|||+.++.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 9999998854321 11 18999999999999999999999999999998
Q ss_pred HH
Q 048308 122 QI 123 (413)
Q Consensus 122 ~i 123 (413)
++
T Consensus 178 ~l 179 (353)
T 1oxx_K 178 SA 179 (353)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=6.3e-31 Score=261.55 Aligned_cols=120 Identities=29% Similarity=0.468 Sum_probs=106.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..+++++||+||
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 478999999988643 345679999999999999999999
Q ss_pred HHHHHHc----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 80 LVFIALF----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 80 l~f~~~~----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+.|.... ++. +||++|||+|+.+|++|+|||||+|||+.++.++
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l 166 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 9986432 110 1899999999999999999999999999999887
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=8.2e-31 Score=262.82 Aligned_cols=137 Identities=28% Similarity=0.482 Sum_probs=113.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++... ..++.++||+|+..+++++||+||
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 103 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN 103 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999987 478999999988643 345679999999999999999999
Q ss_pred HHHHHHc-------------------CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308 80 LVFIALF-------------------RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--- 123 (413)
Q Consensus 80 l~f~~~~-------------------~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--- 123 (413)
+.|.... ++ .+|||+|||+|+.+|++|+|||||+|||+.++.++
T Consensus 104 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 183 (372)
T 1v43_A 104 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 183 (372)
T ss_dssp HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 9885221 11 12899999999999999999999999999999877
Q ss_pred -----------------------------HHhcCCcEEEecCcchH
Q 048308 124 -----------------------------LLNSEGNSLHVGKGDGV 140 (413)
Q Consensus 124 -----------------------------~ll~~G~~v~~G~~~~~ 140 (413)
++|++|+++..|+++++
T Consensus 184 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 184 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 46778888888887766
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=7.3e-31 Score=256.87 Aligned_cols=158 Identities=24% Similarity=0.388 Sum_probs=124.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.++.. ..++.++||+|+..+|+ .||+
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~ 145 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIA 145 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHH
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHH
Confidence 7999999999999999999999999999999999997 478999999998753 35678999999998885 6999
Q ss_pred HHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+.... ++| +||++|||+|+.+|++|+|||||+|||+.+
T Consensus 146 eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~ 225 (306)
T 3nh6_A 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225 (306)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred HHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 999874210 011 289999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
+..+. -+.+|+++..-+ |+.....+ ||.++.+.+|++...++.
T Consensus 226 ~~~i~~~l~~l~~~~Tvi~it------------H~l~~~~~-aD~i~vl~~G~iv~~G~~ 272 (306)
T 3nh6_A 226 ERAIQASLAKVCANRTTIVVA------------HRLSTVVN-ADQILVIKDGCIVERGRH 272 (306)
T ss_dssp HHHHHHHHHHHHTTSEEEEEC------------CSHHHHHT-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCCCEEEEEE------------cChHHHHc-CCEEEEEECCEEEEECCH
Confidence 99884 122456555422 23222234 788888888877654443
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=1.5e-30 Score=246.56 Aligned_cols=120 Identities=26% Similarity=0.458 Sum_probs=104.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|+++++ |+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 48999999999 9999999999999999999999987 468999999987642 345679999999999999999999
Q ss_pred HHHHHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 80 LVFIALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 80 l~f~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.+.... ++. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~ 166 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9874211 111 18999999999999999999999999999998883
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=2.6e-30 Score=240.80 Aligned_cols=148 Identities=27% Similarity=0.405 Sum_probs=122.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. ..++.++||+|+..+++.+||+||+.
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 7899999999999999999999999999999999987 46899999998765 35677999999999999999999998
Q ss_pred HHHHc-----------------CC---c----------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh
Q 048308 82 FIALF-----------------RL---P----------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN 126 (413)
Q Consensus 82 f~~~~-----------------~~---~----------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll 126 (413)
+.... ++ . +||++||++|+.+|++++|||||+|||+.++..+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 101 AVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 85321 11 0 18999999999999999999999999999998884 22
Q ss_pred cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308 127 SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL 164 (413)
Q Consensus 127 ~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 164 (413)
.+|+++.. ..|+.......+|.++-.
T Consensus 181 ~~g~tiii------------vtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 181 KEKGIVII------------SSREELSYCDVNENLHKY 206 (214)
T ss_dssp HHHSEEEE------------EESSCCTTSSEEEEGGGG
T ss_pred hCCCEEEE------------EeCCHHHHHHhCCEEEEe
Confidence 24666655 235666666777777644
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=3.8e-30 Score=244.80 Aligned_cols=153 Identities=25% Similarity=0.402 Sum_probs=122.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++ .||+
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 100 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSII 100 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHH
Confidence 7899999999999999999999999999999999987 468999999987642 24567999999998876 6999
Q ss_pred HHHHHHH-------------Hc-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIA-------------LF-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~-------------~~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+.. .. +.| +||++||++|+.+|++++|||||+|||+.+
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 9997631 00 111 289999999999999999999999999999
Q ss_pred HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+..++ + +.+|+++..-+ |+...... ||.++.+.+|...
T Consensus 181 ~~~i~~~l~~~~~g~tviivt------------H~~~~~~~-~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 181 EHVIMRNMHKICKGRTVIIIA------------HRLSTVKN-ADRIIVMEKGKIV 222 (247)
T ss_dssp HHHHHHHHHHHHTTSEEEEEC------------SSGGGGTT-SSEEEEEETTEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEe------------CCHHHHHh-CCEEEEEECCEEE
Confidence 99884 1 13577666533 34333333 7888888777654
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=3.5e-30 Score=245.26 Aligned_cols=155 Identities=24% Similarity=0.359 Sum_probs=122.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|+++++||+++|+||||||||||+|+|+|.+++ . |+|.++|.+... ..++.++|++|+..+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 479999999999999999999999999999999999874 6 999999987632 345679999999999999999
Q ss_pred HHHHHHHHH--------------cCCc--------------hhHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHH
Q 048308 77 TETLVFIAL--------------FRLP--------------IKRVSRAQELLINPS-------LLFLDEPASGLDSTIAK 121 (413)
Q Consensus 77 ~e~l~f~~~--------------~~~~--------------~krvsia~~l~~~p~-------llllDEPtsgLD~~~~~ 121 (413)
+||+.+... +++. +||++||++|+.+|+ +++|||||+|||+.++.
T Consensus 91 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 91 WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp HHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred HHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 999987421 1111 189999999999999 99999999999999999
Q ss_pred HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
.+. +..+|+++..-+. +.......||.++.+.+|...
T Consensus 171 ~l~~~l~~l~~~g~tviivtH------------d~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 171 ALDKILSALSQQGLAIVMSSH------------DLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEECS------------CHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeC------------CHHHHHHhCCEEEEEECCEEE
Confidence 884 2235776655332 222222446666667677654
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=1.7e-29 Score=242.81 Aligned_cols=155 Identities=25% Similarity=0.413 Sum_probs=124.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCC-ccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSN-VFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~-~~~~~lTv~e~ 79 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+. ..++.+||+||
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 7999999999999999999999999999999999987 478999999987653 3456799999985 56678999999
Q ss_pred HHHHH------------------HcCCc--h--------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 80 LVFIA------------------LFRLP--I--------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 80 l~f~~------------------~~~~~--~--------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
+.+.. .+++. . ||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 179 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH
Confidence 98742 12333 2 8999999999999999999999999999999883
Q ss_pred ----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 125 ----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 125 ----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+..+|.++.. ..|+.......||.++.+.+|...
T Consensus 180 ~l~~l~~~g~tii~------------vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 180 IVEKWKTLGKTVIL------------ISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp HHHHHHHTTCEEEE------------ECSCCTTTGGGCSEEEEEETTEEE
T ss_pred HHHHHHHcCCEEEE------------EeCCHHHHHHhCCEEEEEECCEEE
Confidence 2235766655 235555555566777666666543
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=7.2e-30 Score=246.05 Aligned_cols=154 Identities=23% Similarity=0.363 Sum_probs=122.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++ .||+
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 110 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFR 110 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHH
Confidence 7999999999999999999999999999999999987 468999999987642 23557999999998887 5999
Q ss_pred HHHHHHHH-----------------------c--CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 78 ETLVFIAL-----------------------F--RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 78 e~l~f~~~-----------------------~--~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
||+.+... + ++. +||++|||+|+.+|++|+|||||+|||+.
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 99977310 0 010 18999999999999999999999999999
Q ss_pred HHHHHH--H--h-c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 119 IAKQIL--L--N-S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 119 ~~~~i~--l--l-~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
++..++ + + . +|+++..-+ |+...... ||.++.+.+|.+..
T Consensus 191 ~~~~i~~~l~~~~~~~g~tviivt------------Hd~~~~~~-~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 191 NQLRVQRLLYESPEWASRTVLLIT------------QQLSLAER-AHHILFLKEGSVCE 236 (271)
T ss_dssp HHHHHHHHHHHCTTTTTSEEEEEC------------SCHHHHTT-CSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEe------------CCHHHHHh-CCEEEEEECCEEEE
Confidence 999884 2 2 2 277766533 33222233 78888888887654
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=4.8e-30 Score=248.22 Aligned_cols=155 Identities=28% Similarity=0.324 Sum_probs=122.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h----hccccEEEEecCCccC--CC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R----TVKRKTGFVAHSNVFY--LH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~----~~~~~~~~v~q~~~~~--~~ 73 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+.. . ..++.++||+|+..++ +.
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG 113 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence 7899999999999999999999999999999999987 46899999998764 1 3456799999987543 35
Q ss_pred CCHHHHHHHHHH-----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 74 LTVTETLVFIAL-----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 74 lTv~e~l~f~~~-----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
+||+||+.+... +++. +||++||++|+.+|++|+|||||+|||
T Consensus 114 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD 193 (279)
T 2ihy_A 114 ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193 (279)
T ss_dssp SBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred CCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 699999976311 0110 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcCCcEE--EecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 117 STIAKQIL-----LNSEGNSL--HVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 117 ~~~~~~i~-----ll~~G~~v--~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.++..+. +..+|.++ .. ..|+.......||.++.+.+|+..
T Consensus 194 ~~~~~~l~~~l~~l~~~g~tv~~ii------------vtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 194 FIARESLLSILDSLSDSYPTLAMIY------------VTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEE------------EESCGGGCCTTCCEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEE------------EecCHHHHHHhCCEEEEEECCEEE
Confidence 99999884 22336554 33 235555566778988888887654
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=2.8e-29 Score=240.54 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=123.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ + +|+|.++|.+... ..++.++||+|+..+++ .||+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 110 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIK 110 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHH
Confidence 7999999999999999999999999999999999986 3 7999999987642 34567999999998886 6999
Q ss_pred HHHHHHH-------------HcC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIA-------------LFR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~-------------~~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+.. ..+ ++ +||++||++|+.+|++++|||||+|||+.+
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 9997631 011 11 189999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD 172 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~ 172 (413)
+..+. -+.+|+++..- .|+...... ||.++.+.+|.....
T Consensus 191 ~~~i~~~l~~l~~~~tviiv------------tH~~~~~~~-~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 191 EYLFQKAVEDLRKNRTLIII------------AHRLSTISS-AESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHHHHHHHHTTTSEEEEE------------CSSGGGSTT-CSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEE------------cCCHHHHHh-CCEEEEEECCEEEEE
Confidence 98883 12357766553 344433333 888888888876543
No 29
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=3.4e-29 Score=235.55 Aligned_cols=124 Identities=26% Similarity=0.361 Sum_probs=104.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++| .++|++|+..+++. ||+||+
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g---------~i~~v~q~~~~~~~-tv~enl 89 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQFSWIMPG-TIKENI 89 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---------CEEEECSSCCCCSB-CHHHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---------EEEEEecCCcccCC-CHHHHh
Confidence 37999999999999999999999999999999999987 4789999998 39999999988875 999999
Q ss_pred HHHH------------HcC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIA------------LFR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~------------~~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.+.. ..+ ++ +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i 169 (229)
T 2pze_A 90 IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169 (229)
T ss_dssp HTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHH
T ss_pred hccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHH
Confidence 7631 011 11 1899999999999999999999999999999998
Q ss_pred HH--h---cCCcEEEecC
Q 048308 124 LL--N---SEGNSLHVGK 136 (413)
Q Consensus 124 ~l--l---~~G~~v~~G~ 136 (413)
.- + .+|+++..-+
T Consensus 170 ~~~l~~~~~~~~tvi~vt 187 (229)
T 2pze_A 170 FESCVCKLMANKTRILVT 187 (229)
T ss_dssp HHHCCCCCTTTSEEEEEC
T ss_pred HHHHHHHhhCCCEEEEEc
Confidence 52 2 2466665533
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=1.2e-28 Score=237.02 Aligned_cols=157 Identities=26% Similarity=0.308 Sum_probs=120.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hc-cccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TV-KRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~-~~~~~~v~q~~~~~~~lTv 76 (413)
+|+|||+++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.+... .. ++.++||+|+..+++.+||
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN 114 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence 789999999999999999999999999999999985212578999999987642 11 3359999999999999999
Q ss_pred HHHHHHHHH--------------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 77 TETLVFIAL--------------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 77 ~e~l~f~~~--------------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+|++.+... +++. +||++||++|+.+|++++|||||+|
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~ 194 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 194 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 999875320 0110 1899999999999999999999999
Q ss_pred CCHHHHHHHH--H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCCh-hHHHHHhhCCccC
Q 048308 115 LDSTIAKQIL--L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNP-SDFLLDLANGVVS 170 (413)
Q Consensus 115 LD~~~~~~i~--l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~-ad~~~~~~~~~~~ 170 (413)
||+.++..+. + ..+|+++..-+ |+....... ||.++.+.+|+..
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivt------------Hd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVT------------HYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEEC------------SSGGGGGTSCCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEe------------eCHHHHHhhcCCEEEEEECCEEE
Confidence 9999999984 1 13477666533 333333333 6666666666553
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=3.4e-30 Score=244.41 Aligned_cols=158 Identities=27% Similarity=0.381 Sum_probs=122.7
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.+... ..++.++||+|+..+++ .||
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv 92 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTI 92 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEH
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccH
Confidence 37999999999999999999999999999999999987 468999999987642 34567999999998887 599
Q ss_pred HHHHHHHHH--------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 77 TETLVFIAL--------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 77 ~e~l~f~~~--------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+||+.+... ++ +| +||++||++|+.+|++++|||||+|||+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 999976410 01 11 1899999999999999999999999999
Q ss_pred HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
.++..+. -+.+|+++..-+. +.... ..||.++.+.+|.....++
T Consensus 173 ~~~~~i~~~l~~~~~~~tvi~vtH------------~~~~~-~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 173 ESESMVQKALDSLMKGRTTLVIAH------------RLSTI-VDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp SSCCHHHHHHHHHHTTSEEEEECC------------SHHHH-HHCSEEEEEETTEECCCSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeC------------ChHHH-HhCCEEEEEECCEEEEeCC
Confidence 9988773 1226777666442 22111 2367777777887655443
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=9.6e-29 Score=235.91 Aligned_cols=144 Identities=24% Similarity=0.300 Sum_probs=114.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|. .++.++||+|+..+++.+||+||+.
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~~~~i~~v~q~~~~~~~~tv~enl~ 88 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------VYQSIGFVPQFFSSPFAYSVLDIVL 88 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------ECSCEEEECSCCCCSSCCBHHHHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------EeccEEEEcCCCccCCCCCHHHHHH
Confidence 7899999999999999999999999999999999987 4689998 2457999999999999999999998
Q ss_pred HHHHc--C---------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 82 FIALF--R---------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 82 f~~~~--~---------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.... + +. +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (253)
T 2nq2_C 89 MGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL 168 (253)
T ss_dssp GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHH
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 75321 0 00 18999999999999999999999999999999884
Q ss_pred -----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308 125 -----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168 (413)
Q Consensus 125 -----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 168 (413)
+..+ |.++..-+. +.......||.++.+.+|.
T Consensus 169 ~~l~~l~~~~g~tvi~vtH------------d~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 169 SLLIDLAQSQNMTVVFTTH------------QPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHHHHHHTSCCEEEEEES------------CHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHhcCCEEEEEec------------CHHHHHHhCCEEEEEeCCe
Confidence 2234 776655332 2222223456666666665
No 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=6.2e-29 Score=236.75 Aligned_cols=157 Identities=25% Similarity=0.295 Sum_probs=124.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR--LSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHL 74 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~--~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~l 74 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|. ++ +.+|+|.++|++... . .++.++|++|++.+++.+
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 78999999999999999999999999999999998 44 578999999987642 1 234589999999999999
Q ss_pred CHHHHHHHHHH--c--------------------CCc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 75 TVTETLVFIAL--F--------------------RLP----------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 75 Tv~e~l~f~~~--~--------------------~~~----------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
||+|++.+... . +++ +||++||++|+.+|++++|||||+|||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 99999976421 0 110 189999999999999999999999999
Q ss_pred HHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCCh-hHHHHHhhCCccCCC
Q 048308 117 STIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNP-SDFLLDLANGVVSGD 172 (413)
Q Consensus 117 ~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~-ad~~~~~~~~~~~~~ 172 (413)
+.++..+. +..+|+++..- .|+....... +|.++.+.+|.....
T Consensus 176 ~~~~~~l~~~l~~l~~~g~tvi~v------------tHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 176 IDALKVVARGVNAMRGPNFGALVI------------THYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHHHHHHHHHHHHCSTTCEEEEE------------CSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEE------------ecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99999884 22357776653 3554444455 588888888876543
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=9.6e-29 Score=233.66 Aligned_cols=146 Identities=22% Similarity=0.379 Sum_probs=118.1
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++| .++||+|+.. ++.+||+||+
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~-~~~~tv~enl 86 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---------SVAYVPQQAW-IQNDSLRENI 86 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS---------CEEEECSSCC-CCSEEHHHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC---------EEEEEcCCCc-CCCcCHHHHh
Confidence 37999999999999999999999999999999999987 4789999998 3999999976 4688999999
Q ss_pred HHHHH------------------cCC-c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIAL------------------FRL-P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~~------------------~~~-~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.+... ++. + +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 166 (237)
T 2cbz_A 87 LFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166 (237)
T ss_dssp HTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred hCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 76310 000 0 1899999999999999999999999999999988
Q ss_pred H-Hh------cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308 124 L-LN------SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG 171 (413)
Q Consensus 124 ~-ll------~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~ 171 (413)
+ ++ .+|+++.. ..|+.... ..||.++.+.+|....
T Consensus 167 ~~~l~~~~~~~~~~tvii------------vtH~~~~~-~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 167 FENVIGPKGMLKNKTRIL------------VTHSMSYL-PQVDVIIVMSGGKISE 208 (237)
T ss_dssp HHHTTSTTSTTTTSEEEE------------ECSCSTTG-GGSSEEEEEETTEEEE
T ss_pred HHHHHHHHhhcCCCEEEE------------EecChHHH-HhCCEEEEEeCCEEEE
Confidence 5 23 24666655 23554443 3588888888887654
No 35
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=1.5e-28 Score=260.37 Aligned_cols=158 Identities=28% Similarity=0.392 Sum_probs=127.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+++. ||+
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~ 432 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVK 432 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHH
Confidence 7999999999999999999999999999999999997 478999999988753 356689999999988876 999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++++|||||||||+.+
T Consensus 433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 99976310 0 111 289999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
+..+. -+.+|+++.. +.|+.....+ ||.++.+.+|+....++.
T Consensus 513 ~~~i~~~l~~~~~~~t~i~------------itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 513 ESIIQEALDVLSKDRTTLI------------VAHRLSTITH-ADKIVVIENGHIVETGTH 559 (578)
T ss_dssp HHHHHHHHHHHTTTSEEEE------------ECSSGGGTTT-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCCCEEEE------------EecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence 98873 2345666655 2344444444 899999988887655443
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.1e-29 Score=250.70 Aligned_cols=119 Identities=25% Similarity=0.334 Sum_probs=102.6
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.+|+|||+++++||+++|+||||||||||||+|+|+++ .+|+|.++|+++.. ..++.++||+|+..+++ +||
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv 110 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTF 110 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEH
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCH
Confidence 37999999999999999999999999999999999974 67999999987642 34578999999999887 699
Q ss_pred HHHHHHH------------HHcC----------------------Cc---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 77 TETLVFI------------ALFR----------------------LP---IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 77 ~e~l~f~------------~~~~----------------------~~---~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
+||+.+. ..++ ++ +||++|||+|+.+|++|+|||||||||+.+
T Consensus 111 ~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~ 190 (390)
T 3gd7_A 111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190 (390)
T ss_dssp HHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHH
T ss_pred HHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 9999631 1111 11 289999999999999999999999999999
Q ss_pred HHHH
Q 048308 120 AKQI 123 (413)
Q Consensus 120 ~~~i 123 (413)
+.++
T Consensus 191 ~~~l 194 (390)
T 3gd7_A 191 YQII 194 (390)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9887
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=2.2e-28 Score=259.53 Aligned_cols=159 Identities=26% Similarity=0.381 Sum_probs=126.7
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+++. ||
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv 433 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TI 433 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EH
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cH
Confidence 37999999999999999999999999999999999997 478999999998753 346789999999988865 99
Q ss_pred HHHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||+.+... . ++| +||++|||+|+.+|++++||||||+||+.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 999976310 0 111 28999999999999999999999999999
Q ss_pred HHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 119 IAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 119 ~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
++.++. -+.+|+++..-+ |+.... ..||.++.+.+|++...++.
T Consensus 514 ~~~~i~~~l~~~~~~~tvi~it------------H~l~~~-~~~d~i~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 514 TEKRILDGLKRYTKGCTTFIIT------------QKIPTA-LLADKILVLHEGKVAGFGTH 561 (587)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEE------------SCHHHH-TTSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhCCCCEEEEEe------------cChHHH-HhCCEEEEEECCEEEEECCH
Confidence 999884 234677665533 222222 24788888888887655443
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=5.4e-28 Score=256.29 Aligned_cols=158 Identities=20% Similarity=0.314 Sum_probs=126.8
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.+||++..+ ..++.++||+|++.+++. ||
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv 433 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TV 433 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BH
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CH
Confidence 37999999999999999999999999999999999987 478999999988643 346679999999998874 99
Q ss_pred HHHHHHHHH--------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 77 TETLVFIAL--------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 77 ~e~l~f~~~--------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+||+.+... .+ +| +||++|||+|+.+|++++|||||||||+
T Consensus 434 ~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b60_A 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 999987430 00 11 1899999999999999999999999999
Q ss_pred HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
.++.++. -+.+|+++..- .|+..... .||.++.+.+|+....++
T Consensus 514 ~~~~~i~~~l~~~~~~~tvi~i------------tH~~~~~~-~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 514 ESERAIQAALDELQKNRTSLVI------------AHRLSTIE-QADEIVVVEDGIIVERGT 561 (582)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEE------------CSCGGGTT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEE------------eccHHHHH-hCCEEEEEECCEEEEecC
Confidence 9999884 12357766552 34433333 489999888887765443
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=8.9e-28 Score=230.43 Aligned_cols=117 Identities=27% Similarity=0.340 Sum_probs=101.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEE-EEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTG-FVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~-~v~q~~~~~~~lTv~e~ 79 (413)
+|+|+|++++ ||+++|+||||||||||+|+|+|.+ + .+|+|.++|.+..+ ..++.++ |++|+..+ .+||+||
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~en 93 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHH
Confidence 7899999999 9999999999999999999999998 5 57999999987642 1255799 99999876 8999999
Q ss_pred HHHHHH---------------cCCc-h--------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 80 LVFIAL---------------FRLP-I--------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 80 l~f~~~---------------~~~~-~--------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+.+... +++. . ||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (263)
T 2pjz_A 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168 (263)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH
Confidence 987532 2232 1 8999999999999999999999999999999884
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=4.2e-28 Score=257.84 Aligned_cols=159 Identities=26% Similarity=0.391 Sum_probs=127.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.+||.+..+ ..++.++||+|++.+++ .||+
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~ 446 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVK 446 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHH
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHH
Confidence 7999999999999999999999999999999999997 478999999988753 35678999999998885 5999
Q ss_pred HHHHHHHH----------c----------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL----------F----------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~----------~----------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... + ++| +||++|||+|+.+|++++|||||||||+.+
T Consensus 447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 99986421 0 111 189999999999999999999999999999
Q ss_pred HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308 120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD 176 (413)
Q Consensus 120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~ 176 (413)
+..+. -+.+|+++..- .|+..... .||.++.+.+|++...++.+
T Consensus 527 ~~~i~~~l~~~~~~~t~i~i------------tH~l~~~~-~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 527 EKSIQAAMWKLMEGKTSIII------------AHRLNTIK-NADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHHHTTSEEEEE------------SCCTTHHH-HCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEE------------ecCHHHHH-cCCEEEEEECCEEEEECCHH
Confidence 98883 12367776653 34433322 38888888888876655443
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=6.4e-28 Score=255.70 Aligned_cols=157 Identities=22% Similarity=0.334 Sum_probs=125.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.+||.+..+ ..++.++||+|++.+++ .||+
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 434 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIA 434 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHH
Confidence 79999999999999999999999999999999999874 67999999987642 35678999999998887 4999
Q ss_pred HHHHHHH--H------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 78 ETLVFIA--L------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 78 e~l~f~~--~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
||+.+.. . . ++| +||++|||+|+.+|++++|||||+|||+.
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 9998753 0 0 111 18999999999999999999999999999
Q ss_pred HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308 119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK 174 (413)
Q Consensus 119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~ 174 (413)
++.++. + +.+|+++..-+ |+..... .||.++.+.+|+....++
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~it------------H~~~~~~-~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 515 SERAIQAALDELQKNKTVLVIA------------HRLSTIE-QADEILVVDEGEIIERGR 561 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEEe------------cCHHHHH-hCCEEEEEECCEEEEECC
Confidence 999884 1 23577665532 3322222 388888888887765444
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=9.4e-28 Score=255.03 Aligned_cols=153 Identities=25% Similarity=0.402 Sum_probs=120.5
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.+||++..+ ..++.++||+|++.+++ .||+
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 435 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIA 435 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHH
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHH
Confidence 7999999999999999999999999999999999987 478999999988643 34567999999998886 5999
Q ss_pred HHHHHHHHc-----------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 78 ETLVFIALF-----------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 78 e~l~f~~~~-----------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
||+.+.... ++| +||++|||+|+.+|++++|||||+|||
T Consensus 436 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp HHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCC
T ss_pred HHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCC
Confidence 999874211 111 189999999999999999999999999
Q ss_pred HHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308 117 STIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 117 ~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.++..+. + +.+|+++..-+ |+.... ..||.++.+.+|+..
T Consensus 516 ~~~~~~i~~~l~~~~~~~tvi~it------------H~~~~~-~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 516 AENEYLVQEALDRLMDGRTVLVIA------------HRLSTI-KNANMVAVLDQGKIT 560 (595)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEC------------CCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEe------------cCHHHH-HcCCEEEEEECCEEE
Confidence 99998883 1 22466655533 221111 226777777777654
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=2.8e-27 Score=229.99 Aligned_cols=123 Identities=25% Similarity=0.355 Sum_probs=103.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++| .++|++|+..+++. ||+||+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~enl 119 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQNSWIMPG-TIKENI 119 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---------CEEEECSSCCCCSS-BHHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---------EEEEEeCCCccCcc-cHHHHh
Confidence 37999999999999999999999999999999999987 4789999998 38999999988875 999998
Q ss_pred HHHH------------HcC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VFIA------------LFR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f~~------------~~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
. .. ..+ ++ +||++||++|+.+|++++|||||+|||+.++..+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198 (290)
T ss_dssp H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred h-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence 5 21 011 11 2899999999999999999999999999999998
Q ss_pred HH--h---cCCcEEEecC
Q 048308 124 LL--N---SEGNSLHVGK 136 (413)
Q Consensus 124 ~l--l---~~G~~v~~G~ 136 (413)
.- + .+|+++..-+
T Consensus 199 ~~~ll~~~~~~~tviivt 216 (290)
T 2bbs_A 199 FESCVCKLMANKTRILVT 216 (290)
T ss_dssp HHHCCCCCTTTSEEEEEC
T ss_pred HHHHHHHhhCCCEEEEEe
Confidence 52 2 2466665543
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=1.1e-26 Score=266.01 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=105.2
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
++|+|+|++++|||.+||+||||||||||+++|.|.++ +.+|+|.+||.++.+ ..|+++++|+|++.+|+. |+
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TI 1169 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SI 1169 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EH
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cH
Confidence 38999999999999999999999999999999999997 467999999998753 568899999999998864 99
Q ss_pred HHHHHHHHH---------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308 77 TETLVFIAL---------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLD 116 (413)
Q Consensus 77 ~e~l~f~~~---------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD 116 (413)
|||+.|... . ++| +||++|||||+.+|++|+||||||+||
T Consensus 1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence 999865310 0 122 289999999999999999999999999
Q ss_pred HHHHHHH
Q 048308 117 STIAKQI 123 (413)
Q Consensus 117 ~~~~~~i 123 (413)
+.+...|
T Consensus 1250 ~~tE~~I 1256 (1321)
T 4f4c_A 1250 TESEKVV 1256 (1321)
T ss_dssp SHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=8.8e-26 Score=258.01 Aligned_cols=119 Identities=27% Similarity=0.446 Sum_probs=104.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||.++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++||+|++.+++. ||+
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 481 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIA 481 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHH
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHH
Confidence 7999999999999999999999999999999999997 478999999987643 456679999999998865 999
Q ss_pred HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
||+.+... . ++| +||++|||+|+.+|++|+||||||+||+.+
T Consensus 482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~ 561 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 99988521 0 111 289999999999999999999999999999
Q ss_pred HHHH
Q 048308 120 AKQI 123 (413)
Q Consensus 120 ~~~i 123 (413)
...+
T Consensus 562 ~~~i 565 (1284)
T 3g5u_A 562 EAVV 565 (1284)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=7.2e-26 Score=259.33 Aligned_cols=138 Identities=25% Similarity=0.417 Sum_probs=118.5
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.+|+|+|++++|||.+||+||||||||||+++|.|.++ +.+|+|.+||.++.+ ..++.++||+|++.+|. -|+
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI 508 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTI 508 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEH
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhhcccccCCcceeeC-Cch
Confidence 37999999999999999999999999999999999997 578999999998753 46778999999998875 599
Q ss_pred HHHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~ 118 (413)
+||+.|... . ++| +||++||||++.||++++||||||+||+.
T Consensus 509 ~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred hHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Confidence 999987521 0 112 28999999999999999999999999999
Q ss_pred HHHHH-----------------------------HHhcCCcEEEecCcchHh
Q 048308 119 IAKQI-----------------------------LLNSEGNSLHVGKGDGVM 141 (413)
Q Consensus 119 ~~~~i-----------------------------~ll~~G~~v~~G~~~~~~ 141 (413)
+...+ ++|++|+++..|+.++..
T Consensus 589 te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 589 SEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp THHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHH
Confidence 87665 477888888888877764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=1.9e-25 Score=255.25 Aligned_cols=158 Identities=25% Similarity=0.421 Sum_probs=128.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~ 77 (413)
+|+|+|++++|||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.+ ..++.++||+|++.++ +.||+
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~ 1124 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIA 1124 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHH
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHHhceEEECCCCccc-cccHH
Confidence 7999999999999999999999999999999999987 478999999998753 4567899999999877 56999
Q ss_pred HHHHHHHH----------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 78 ETLVFIAL----------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 78 e~l~f~~~----------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
||+.+... .++| +||++|||+|+.+|++|+|||||+|||+
T Consensus 1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 99965310 0111 2899999999999999999999999999
Q ss_pred HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308 118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD 175 (413)
Q Consensus 118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~ 175 (413)
.+...+. -..+|+++.. +.|+.....+ ||.++.+.+|++.+.++.
T Consensus 1205 ~~~~~i~~~l~~~~~~~tvi~------------isH~l~~i~~-~dri~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1205 ESEKVVQEALDKAREGRTCIV------------IAHRLSTIQN-ADLIVVIQNGKVKEHGTH 1253 (1284)
T ss_dssp HHHHHHHHHHHHHSSSSCEEE------------ECSCTTGGGS-CSEEEEEETBEEEEEECH
T ss_pred HHHHHHHHHHHHhCCCCEEEE------------EecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence 9998873 2235766555 3466655545 899999999887655443
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.88 E-value=5.6e-23 Score=218.26 Aligned_cols=122 Identities=28% Similarity=0.354 Sum_probs=98.8
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+++|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.+ .+.++|++|+....+.+||.|++..
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~ 440 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSK 440 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE---------eeEEEEEecCccCCCCCcHHHHHHh
Confidence 5677888999999999999999999999999999874 5688875 2469999999877788999999865
Q ss_pred H-H-H-------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh-c
Q 048308 83 I-A-L-------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN-S 127 (413)
Q Consensus 83 ~-~-~-------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll-~ 127 (413)
. . . +++. +||+.||++|+.+|++|+|||||+|||..++..+. +. .
T Consensus 441 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 520 (607)
T 3bk7_A 441 IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520 (607)
T ss_dssp HHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 3 1 0 0111 28999999999999999999999999999998883 11 2
Q ss_pred CCcEEEec
Q 048308 128 EGNSLHVG 135 (413)
Q Consensus 128 ~G~~v~~G 135 (413)
+|.++..-
T Consensus 521 ~g~tvi~v 528 (607)
T 3bk7_A 521 NEKTALVV 528 (607)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 46655553
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.88 E-value=9.3e-23 Score=214.03 Aligned_cols=111 Identities=31% Similarity=0.392 Sum_probs=93.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+++|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.+ ...++||+|+....+.+||.|++..
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~ 370 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW---------DLTVAYKPQYIKADYEGTVYELLSK 370 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE---------CceEEEEecCCcCCCCCcHHHHHHh
Confidence 5667788899999999999999999999999999874 5688875 2459999999877788999998865
Q ss_pred H-H-Hc-------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 83 I-A-LF-------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 83 ~-~-~~-------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
. . .. ++. +||+.||++|+.+|++|+|||||+|||..++..+.
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 371 IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 3 1 10 110 18999999999999999999999999999998884
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=4.8e-22 Score=208.38 Aligned_cols=122 Identities=24% Similarity=0.297 Sum_probs=99.5
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+++|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.+++ +.++|++|+......+||+|++.+
T Consensus 284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC--------CCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC--------eeeEeechhcccccCCCHHHHHHH
Confidence 4556788999999999999999999999999999874 679998764 358999998776678999999976
Q ss_pred HHHcC----------------C--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh-
Q 048308 83 IALFR----------------L--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN- 126 (413)
Q Consensus 83 ~~~~~----------------~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll- 126 (413)
..... + .+|||.||++|+.+|++|+|||||+|||+.++..++ +.
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433 (538)
T ss_dssp HCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 42110 0 018999999999999999999999999999998884 22
Q ss_pred cCCcEEEe
Q 048308 127 SEGNSLHV 134 (413)
Q Consensus 127 ~~G~~v~~ 134 (413)
..|.++..
T Consensus 434 ~~g~tvi~ 441 (538)
T 3ozx_A 434 ERKAVTFI 441 (538)
T ss_dssp HTTCEEEE
T ss_pred hCCCEEEE
Confidence 24776655
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=9.2e-23 Score=219.47 Aligned_cols=140 Identities=26% Similarity=0.333 Sum_probs=88.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHH---------------------HHHhCCCCCC-----CeeEEEEECCcccCh
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLP---------------------TTLGGRLSTG-----ETRGNIDYNNNPLSR 55 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl---------------------~~l~g~~~~~-----~~~G~i~~~g~~~~~ 55 (413)
+|+|||+++++||+++|+||||||||||+ ++++|...++ ...|.|.++|.....
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~ 112 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR 112 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc
Confidence 79999999999999999999999999998 7777765542 124677777765543
Q ss_pred hccccEEEEecCCc-------------------cCCCCCHHHHHHHHH---------------------------HcCC-
Q 048308 56 TVKRKTGFVAHSNV-------------------FYLHLTVTETLVFIA---------------------------LFRL- 88 (413)
Q Consensus 56 ~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~f~~---------------------------~~~~- 88 (413)
..++.+++|+|... .++.+||+|++.+.. .+++
T Consensus 113 ~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 192 (670)
T 3ux8_A 113 NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLD 192 (670)
T ss_dssp --CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCT
T ss_pred cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33334455544322 246789999987631 1111
Q ss_pred ----c----------hhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH-----------------------------
Q 048308 89 ----P----------IKRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI----------------------------- 123 (413)
Q Consensus 89 ----~----------~krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i----------------------------- 123 (413)
. +||+.||++|+.+|+ +|+|||||+|||+.++..+
T Consensus 193 ~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ 272 (670)
T 3ux8_A 193 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADY 272 (670)
T ss_dssp TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSE
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 1 289999999999998 9999999999999999877
Q ss_pred -HHh------cCCcEEEecCcchHh
Q 048308 124 -LLN------SEGNSLHVGKGDGVM 141 (413)
Q Consensus 124 -~ll------~~G~~v~~G~~~~~~ 141 (413)
++| ++|++++.|+++++.
T Consensus 273 ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 273 LIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHH
T ss_pred EEEecccccccCCEEEEecCHHHHh
Confidence 244 788888888877653
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-21 Score=207.41 Aligned_cols=122 Identities=23% Similarity=0.262 Sum_probs=95.3
Q ss_pred ccccceeEEecC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLG-----ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~G-----e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv 76 (413)
+++|+|+++++| |+++|+||||||||||+|+|+|++++ .+|+. . .+..++|++|+.......||
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~---~~~~i~~~~q~~~~~~~~tv 430 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I---PKLNVSMKPQKIAPKFPGTV 430 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C---CSCCEEEECSSCCCCCCSBH
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------c---cCCcEEEecccccccCCccH
Confidence 478999999988 78999999999999999999999874 45641 1 13468999998776667899
Q ss_pred HHHHHHHHH---------------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308 77 TETLVFIAL---------------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--- 124 (413)
Q Consensus 77 ~e~l~f~~~---------------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--- 124 (413)
+|++..... +++ .+|||.||++|+.+|++|+|||||+|||+.++..++
T Consensus 431 ~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll 510 (608)
T 3j16_B 431 RQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510 (608)
T ss_dssp HHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 998753210 111 028999999999999999999999999999998873
Q ss_pred --Hh-cCCcEEEe
Q 048308 125 --LN-SEGNSLHV 134 (413)
Q Consensus 125 --ll-~~G~~v~~ 134 (413)
+. .+|.++..
T Consensus 511 ~~l~~~~g~tvii 523 (608)
T 3j16_B 511 RRFILHNKKTAFI 523 (608)
T ss_dssp HHHHHHHTCEEEE
T ss_pred HHHHHhCCCEEEE
Confidence 22 24666655
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=2.8e-21 Score=202.75 Aligned_cols=130 Identities=28% Similarity=0.354 Sum_probs=96.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE---------EECCcccCh------hccccEEEEec
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---------DYNNNPLSR------TVKRKTGFVAH 66 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~------~~~~~~~~v~q 66 (413)
+|+|+| .+++||+++|+||||||||||+|+|+|.+++ .+|++ .++|.+... ..+..+++++|
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 689999 9999999999999999999999999999874 34654 345654321 11235788888
Q ss_pred CCccCCC---CCHHHHHHHH----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 67 SNVFYLH---LTVTETLVFI----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 67 ~~~~~~~---lTv~e~l~f~----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
+....+. .|+.|++... ..+++. +||+.||++|+.+|++|+|||||+|||+.+
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 6543332 3888887532 112221 289999999999999999999999999999
Q ss_pred HHHHH-----HhcCCcEEEe
Q 048308 120 AKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 120 ~~~i~-----ll~~G~~v~~ 134 (413)
+..+. +..+|.++-.
T Consensus 194 ~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 194 RLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEE
Confidence 98873 2345665555
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.84 E-value=2.6e-21 Score=205.40 Aligned_cols=132 Identities=27% Similarity=0.348 Sum_probs=97.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE---------EECCcccCh------hccccEEEEec
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---------DYNNNPLSR------TVKRKTGFVAH 66 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~------~~~~~~~~v~q 66 (413)
+|+|+| .+++||+++|+||||||||||+|+|+|.+++ .+|++ .++|.+... ..+..+++++|
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 689999 9999999999999999999999999999874 44664 345654321 11235778888
Q ss_pred CCccCC---CCCHHHHHHHH----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308 67 SNVFYL---HLTVTETLVFI----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 67 ~~~~~~---~lTv~e~l~f~----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~ 119 (413)
.....+ ..||+|++... ..+++. +||++||++|+.+|++|+|||||+|||+.+
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 643322 23899987531 122221 289999999999999999999999999999
Q ss_pred HHHHH-----HhcCCcEEEecC
Q 048308 120 AKQIL-----LNSEGNSLHVGK 136 (413)
Q Consensus 120 ~~~i~-----ll~~G~~v~~G~ 136 (413)
+..+. +..+|.++..-+
T Consensus 264 ~~~l~~~L~~l~~~g~tvIivs 285 (607)
T 3bk7_A 264 RLKVARVIRRLANEGKAVLVVE 285 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCEEEEEe
Confidence 98873 334577665533
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.83 E-value=5.3e-21 Score=210.72 Aligned_cols=110 Identities=24% Similarity=0.343 Sum_probs=88.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l 80 (413)
+|+|+|+++++||+++|+||||||||||+|+|+| |+| +|.+.... ..++|++|+. .+++.+||.|++
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ltv~e~l 517 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTSVLDFV 517 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSBHHHHH
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc--eeEEEEcccccccccCCcHHHHH
Confidence 6899999999999999999999999999999984 111 23322111 2368998874 678899999998
Q ss_pred HH------------HHHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 81 VF------------IALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 81 ~f------------~~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
.+ ...++++ +||+.||++|+.+|++|+|||||+|||+.++..+
T Consensus 518 ~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 518 FESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp HTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 63 1123332 2899999999999999999999999999999887
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.83 E-value=6e-21 Score=210.30 Aligned_cols=47 Identities=34% Similarity=0.518 Sum_probs=44.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 50 (413)
+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~ 734 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHE 734 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECT
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcC
Confidence 7899999999999999999999999999999999987 4689999986
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.82 E-value=8.3e-21 Score=204.23 Aligned_cols=157 Identities=30% Similarity=0.437 Sum_probs=101.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhC---------------CCCC--C--CeeEEEEECCcccChhc-----
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG---------------RLST--G--ETRGNIDYNNNPLSRTV----- 57 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g---------------~~~~--~--~~~G~i~~~g~~~~~~~----- 57 (413)
+|+|||+++++||+++|+||||||||||+|+|.+ .... + ...|.|.+++.+.....
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 6899999999999999999999999999987641 1000 0 23467777776542100
Q ss_pred ----------------------------------------cccEEEEecCCccC--------------------------
Q 048308 58 ----------------------------------------KRKTGFVAHSNVFY-------------------------- 71 (413)
Q Consensus 58 ----------------------------------------~~~~~~v~q~~~~~-------------------------- 71 (413)
.+..|++.|+..++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 00112333322222
Q ss_pred ------CCCCHHHHHHHHHH-------------cCC---------------chhHHHHHHHHhhCC---CEEEEeCCCCC
Q 048308 72 ------LHLTVTETLVFIAL-------------FRL---------------PIKRVSRAQELLINP---SLLFLDEPASG 114 (413)
Q Consensus 72 ------~~lTv~e~l~f~~~-------------~~~---------------~~krvsia~~l~~~p---~llllDEPtsg 114 (413)
..+||+|++.+... +++ .+|||+||++|+.+| ++|+|||||+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~ 576 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 576 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTT
T ss_pred CCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCC
Confidence 25799999876321 111 128999999999887 59999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh------hCCccCC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL------ANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~------~~~~~~~ 171 (413)
||+.++.+++ +..+|.+|..-+ |+..... .||+++.+ ..|++..
T Consensus 577 LD~~~~~~i~~~l~~l~~~g~tvi~vt------------Hd~~~~~-~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 577 LHVDDIARLLDVLHRLVDNGDTVLVIE------------HNLDVIK-TADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHHT-TCSEEEEEESSSGGGCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEe------------CCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence 9999998884 334677766633 3332222 37888777 6776544
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.76 E-value=1.6e-19 Score=189.33 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=85.6
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE-----------EECCcccChh----c--cccEEEEecCCcc--
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI-----------DYNNNPLSRT----V--KRKTGFVAHSNVF-- 70 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~~----~--~~~~~~v~q~~~~-- 70 (413)
.++||+++|+||||||||||+|+|+|.+++ .+|+| .++|.+.... . ...+..+.|....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 379999999999999999999999999874 45777 4666554211 1 1123333333211
Q ss_pred -CCCCCHHHHHHHH----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308 71 -YLHLTVTETLVFI----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL- 124 (413)
Q Consensus 71 -~~~lTv~e~l~f~----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~- 124 (413)
+...||+|.+.-. ..+++. +||+.||++|+.+|++|+|||||+|||+.++..+.
T Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~ 179 (538)
T 3ozx_A 100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179 (538)
T ss_dssp TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 1234788766421 112221 28999999999999999999999999999998873
Q ss_pred ---HhcCCcEEEec
Q 048308 125 ---LNSEGNSLHVG 135 (413)
Q Consensus 125 ---ll~~G~~v~~G 135 (413)
-+.+|.++..-
T Consensus 180 ~l~~l~~g~tii~v 193 (538)
T 3ozx_A 180 AIRELLKNKYVIVV 193 (538)
T ss_dssp HHHHHCTTSEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 22347666553
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.9e-20 Score=192.67 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=91.2
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-E-EEECCcccChhccccEEEEecCCc---cCCCCCHHH
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-N-IDYNNNPLSRTVKRKTGFVAHSNV---FYLHLTVTE 78 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~v~q~~~---~~~~lTv~e 78 (413)
.++|+.+++||+++|+||||||||||+|+|+|... +.+| + |.++|. .++.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhh
Confidence 46889999999999999999999999999999986 4679 8 999983 2567899999874 455679998
Q ss_pred HHHHHHHc-----------------CC------------chhHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHH
Q 048308 79 TLVFIALF-----------------RL------------PIKRVSRAQE--LLINPSL----LFLDE-PASGLDSTIAKQ 122 (413)
Q Consensus 79 ~l~f~~~~-----------------~~------------~~krvsia~~--l~~~p~l----lllDE-PtsgLD~~~~~~ 122 (413)
++ |.... ++ .+||+++|++ |+.+|++ ++||| ||+|||.. ...
T Consensus 202 ni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~ 279 (460)
T 2npi_A 202 PT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAE 279 (460)
T ss_dssp TT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHH
T ss_pred hh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHH
Confidence 88 53221 00 0189999999 9999999 99999 99999998 444
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
+
T Consensus 280 l 280 (460)
T 2npi_A 280 L 280 (460)
T ss_dssp H
T ss_pred H
Confidence 4
No 60
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=3.3e-19 Score=174.09 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=95.5
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc--cccEEEEecCCc-cCC
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV--KRKTGFVAHSNV-FYL 72 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~--~~~~~~v~q~~~-~~~ 72 (413)
+++|+.+++|++++|+||||||||||++.|+|++++ ..|+|.++|.+... .+ ++.++|++|++. .++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 578899999999999999999999999999999863 46999999876532 12 246899999988 889
Q ss_pred CCCHHHHHHHHHHcCC---------------------chhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH
Q 048308 73 HLTVTETLVFIALFRL---------------------PIKRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 73 ~lTv~e~l~f~~~~~~---------------------~~krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i 123 (413)
.+|++|++.++...+. +++|+.||++++.+|+ +|+|| ||+|||+.++.+-
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~ 241 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQARE 241 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHH
Confidence 9999999988653211 1279999999999999 99999 9999999877543
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.73 E-value=7e-18 Score=185.55 Aligned_cols=160 Identities=29% Similarity=0.418 Sum_probs=107.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHH---------HHHhCCCCC-C---Cee------EEEEECCcccChh------
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLP---------TTLGGRLST-G---ETR------GNIDYNNNPLSRT------ 56 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl---------~~l~g~~~~-~---~~~------G~i~~~g~~~~~~------ 56 (413)
.|+|||+++++||+++|+|+||||||||+ +.+.+.... + ..+ +.+.++..+....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 58999999999999999999999999997 444443221 1 122 3345544332100
Q ss_pred ---------------------------------------ccccEEEEecCCccCC-------------------------
Q 048308 57 ---------------------------------------VKRKTGFVAHSNVFYL------------------------- 72 (413)
Q Consensus 57 ---------------------------------------~~~~~~~v~q~~~~~~------------------------- 72 (413)
..+..|++.++..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCCHHHHHHHHHH-------------cCC---------------chhHHHHHHHHhhCC---CEEEEeCCCCC
Q 048308 73 -------HLTVTETLVFIAL-------------FRL---------------PIKRVSRAQELLINP---SLLFLDEPASG 114 (413)
Q Consensus 73 -------~lTv~e~l~f~~~-------------~~~---------------~~krvsia~~l~~~p---~llllDEPtsg 114 (413)
.+||.|++.|... +++ .+||+.||++|+.+| ++++|||||+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsG 838 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVG 838 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTT
T ss_pred CCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCC
Confidence 4788998876321 111 128999999999875 79999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh------hCCccCCCCC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL------ANGVVSGDPK 174 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~------~~~~~~~~~~ 174 (413)
||+.+..+++ +.++|++|..-+ |+.....+ ||+++++ ..|++...++
T Consensus 839 LD~~~~~~L~~lL~~L~~~G~TVIvI~------------HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gt 896 (916)
T 3pih_A 839 LHFEDVRKLVEVLHRLVDRGNTVIVIE------------HNLDVIKN-ADHIIDLGPEGGKEGGYIVATGT 896 (916)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHHTT-CSEEEEEESSSGGGCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHh-CCEEEEecCCCCCCCCEEEEEcC
Confidence 9999999884 335687766633 33333334 8898888 6777654433
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.8e-18 Score=183.59 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=84.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE-----------EECCcccCh----hcccc--EEEEe
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI-----------DYNNNPLSR----TVKRK--TGFVA 65 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~----~~~~~--~~~v~ 65 (413)
|++++ .+++||+++|+||||||||||+|+|+|.+++ .+|+| .+.|..... ...+. ..+.+
T Consensus 94 l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 94 LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 34444 5789999999999999999999999999875 45766 233332211 01111 12233
Q ss_pred cCCcc------CCCCCHHHHHHHH------------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 66 HSNVF------YLHLTVTETLVFI------------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 66 q~~~~------~~~lTv~e~l~f~------------~~~~~~--------------~krvsia~~l~~~p~llllDEPts 113 (413)
|.... -+..++.+.+... ..+++. +||++||++|+.+|++|+|||||+
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts 250 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred hhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 32111 1223555544321 122221 289999999999999999999999
Q ss_pred CCCHHHHHHHH-----HhcCCcEEEec
Q 048308 114 GLDSTIAKQIL-----LNSEGNSLHVG 135 (413)
Q Consensus 114 gLD~~~~~~i~-----ll~~G~~v~~G 135 (413)
|||+.++..+. +..+|.++..-
T Consensus 251 ~LD~~~~~~l~~~l~~l~~~g~tvi~v 277 (608)
T 3j16_B 251 YLDVKQRLNAAQIIRSLLAPTKYVICV 277 (608)
T ss_dssp TCCHHHHHHHHHHHHGGGTTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999998773 33457766553
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.73 E-value=4.7e-18 Score=186.22 Aligned_cols=157 Identities=31% Similarity=0.487 Sum_probs=105.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHh-C----CC-----CCC---CeeE------EEEECCcccChhc-----
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG-G----RL-----STG---ETRG------NIDYNNNPLSRTV----- 57 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~-g----~~-----~~~---~~~G------~i~~~g~~~~~~~----- 57 (413)
.|+|||+++++||+++|+|+||||||||+++|. | .+ .++ ...| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999853 2 11 122 1234 5788887652100
Q ss_pred ------------------cccEEEEecCCcc----------------------CC-------------------------
Q 048308 58 ------------------KRKTGFVAHSNVF----------------------YL------------------------- 72 (413)
Q Consensus 58 ------------------~~~~~~v~q~~~~----------------------~~------------------------- 72 (413)
.+..||++|...+ .+
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 1234555553211 01
Q ss_pred -------CCCHHHHHHHHH-------------HcCCc---------------hhHHHHHHHHhhCC---CEEEEeCCCCC
Q 048308 73 -------HLTVTETLVFIA-------------LFRLP---------------IKRVSRAQELLINP---SLLFLDEPASG 114 (413)
Q Consensus 73 -------~lTv~e~l~f~~-------------~~~~~---------------~krvsia~~l~~~p---~llllDEPtsg 114 (413)
.+||.|++.|.. .+++. +||+.||++|+.+| ++++|||||+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsG 878 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 878 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTT
T ss_pred CCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 468888876521 11111 28999999999765 99999999999
Q ss_pred CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh------hCCccCC
Q 048308 115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL------ANGVVSG 171 (413)
Q Consensus 115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~------~~~~~~~ 171 (413)
||..++.+++ +..+|.+|..-+ |+.... ..||+++.+ ..|++..
T Consensus 879 LD~~~~~~l~~lL~~L~~~G~TVIvis------------Hdl~~i-~~aDrIivL~p~gG~~~G~Iv~ 933 (972)
T 2r6f_A 879 LHVDDIARLLDVLHRLVDNGDTVLVIE------------HNLDVI-KTADYIIDLGPEGGDRGGQIVA 933 (972)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHH-TTCSEEEEECSSSTTSCCSEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEc------------CCHHHH-HhCCEEEEEcCCCCCCCCEEEE
Confidence 9999999884 334687776643 222222 237888887 4666543
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.72 E-value=1.3e-17 Score=168.69 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=54.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC------------------------------------CCeeEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST------------------------------------GETRGN 45 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~------------------------------------~~~~G~ 45 (413)
+++++|+.+++| +++|+||||||||||+++|++.... ...+|.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 588999999999 9999999999999999999765531 023588
Q ss_pred EEECCcccCh-----hccccEEEEecCCccC
Q 048308 46 IDYNNNPLSR-----TVKRKTGFVAHSNVFY 71 (413)
Q Consensus 46 i~~~g~~~~~-----~~~~~~~~v~q~~~~~ 71 (413)
+.+||.+.+. ..+..+++++|++.++
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~ 159 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVS 159 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTT
T ss_pred EEECCEECCHHHHHHHHhhceEEecCccccc
Confidence 9999998753 1233489999987654
No 65
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=9.4e-20 Score=168.70 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=75.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCC--ccCCCC-CHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSN--VFYLHL-TVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~--~~~~~l-Tv~ 77 (413)
+|+|+ ++||+++|+||||||||||+|+|+|. ++ .+|+|...... .....++.++|++|+. .+.+.. ++.
T Consensus 15 ~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~ 87 (208)
T 3b85_A 15 YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH 87 (208)
T ss_dssp HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence 56675 89999999999999999999999999 63 44555211000 1112356799999975 110110 111
Q ss_pred HHHH----------HHHHcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh---cCCcEEE
Q 048308 78 ETLV----------FIALFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN---SEGNSLH 133 (413)
Q Consensus 78 e~l~----------f~~~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll---~~G~~v~ 133 (413)
+.+. .... + ..+||++||++|+.+|++++|||||+| ++..+. ++ .+|.++.
T Consensus 88 ~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii 153 (208)
T 3b85_A 88 DALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV 153 (208)
T ss_dssp HHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE
T ss_pred HHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE
Confidence 1110 0011 2 124899999999999999999999999 444442 11 4576655
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=2.1e-18 Score=171.95 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=97.2
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc--cccEEEEecCCc-cCC
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV--KRKTGFVAHSNV-FYL 72 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~--~~~~~~v~q~~~-~~~ 72 (413)
+++|+.+++|++++|+||||||||||++.|+|++++ ..|+|.++|.+... .+ ++.++|++|+.. +.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999999863 46999999876532 11 346899999988 889
Q ss_pred CCCHHHHHHHHHHcCC---------------------chhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH
Q 048308 73 HLTVTETLVFIALFRL---------------------PIKRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 73 ~lTv~e~l~f~~~~~~---------------------~~krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i 123 (413)
.+|++|++.++...+. +++|+.||++++.+|+ +|+|| ||+|||+.++.+-
T Consensus 226 ~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~ 298 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQARE 298 (359)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHH
Confidence 9999999988653211 1279999999999999 99999 9999999877543
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.71 E-value=1.7e-19 Score=161.44 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCcc-CCCCCHHHHHHHH
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVF-YLHLTVTETLVFI 83 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~-~~~lTv~e~l~f~ 83 (413)
|||+++++||+++|+||||||||||+|++.+-.. .+++. . ..++++|+... ...-++.+.+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~d----~---~~g~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISSD----F---CRGLMSDDENDQTVTGAAFDVLHYI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEHH----H---HHHHHCSSTTCGGGHHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEccH----H---HHHHhcCcccchhhHHHHHHHHHHH
Confidence 6899999999999999999999999997643110 11111 0 11344444211 1111233433332
Q ss_pred HH----cCC-------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308 84 AL----FRL-------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA 120 (413)
Q Consensus 84 ~~----~~~-------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~ 120 (413)
.. .+. .+||+.||++++.+|++++|||||+|||+.++
T Consensus 66 ~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 66 VSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 21 111 13899999999999999999999999999944
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.70 E-value=2e-17 Score=180.53 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308 91 KRVSRAQELLIN---PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162 (413)
Q Consensus 91 krvsia~~l~~~---p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 162 (413)
||+.||++|+.+ |++++|||||+|||..+..+++ +.++|.+|..-+ |+.... ..||+++
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvis------------Hdl~~i-~~aDrii 803 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE------------HKMQVV-AASDWVL 803 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHH-TTCSEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc------------CCHHHH-HhCCEEE
Confidence 899999999996 7999999999999999999884 335687776633 333333 3478888
Q ss_pred Hh------hCCccC
Q 048308 163 DL------ANGVVS 170 (413)
Q Consensus 163 ~~------~~~~~~ 170 (413)
++ ..|++.
T Consensus 804 ~L~p~~g~~~G~Iv 817 (842)
T 2vf7_A 804 DIGPGAGEDGGRLV 817 (842)
T ss_dssp EECSSSGGGCCSEE
T ss_pred EECCCCCCCCCEEE
Confidence 87 466654
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.70 E-value=1.7e-17 Score=182.34 Aligned_cols=68 Identities=32% Similarity=0.516 Sum_probs=50.5
Q ss_pred hHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308 91 KRVSRAQELLINP---SLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162 (413)
Q Consensus 91 krvsia~~l~~~p---~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 162 (413)
||+.||++|+.+| ++++|||||+|||..+..+++ +..+|.+|..-+ |+.... ..||+++
T Consensus 870 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis------------Hdl~~i-~~aDrIi 936 (993)
T 2ygr_A 870 QRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE------------HNLDVI-KTSDWII 936 (993)
T ss_dssp HHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHH-TTCSEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc------------CCHHHH-HhCCEEE
Confidence 8999999999865 999999999999999998884 234687776633 232222 2478888
Q ss_pred Hh------hCCccCC
Q 048308 163 DL------ANGVVSG 171 (413)
Q Consensus 163 ~~------~~~~~~~ 171 (413)
.+ ..|.+..
T Consensus 937 vL~p~gg~~~G~Iv~ 951 (993)
T 2ygr_A 937 DLGPEGGAGGGTVVA 951 (993)
T ss_dssp EEESSSTTSCSEEEE
T ss_pred EECCCcCCCCCEEEE
Confidence 88 4666543
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.70 E-value=6.6e-20 Score=185.94 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=88.1
Q ss_pred ccccceeEEecCc--------------------EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccE
Q 048308 2 ILKGIRGVSSLGE--------------------LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61 (413)
Q Consensus 2 iL~~vs~~~~~Ge--------------------~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~ 61 (413)
+|+|||+.+++|| +++|+||||||||||+|+|+|+.++ .+|+|.++|.+.. + .
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t---~--~ 110 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT---M--E 110 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC-------C--C
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc---e--e
Confidence 5889999999999 9999999999999999999999874 5688988886542 1 2
Q ss_pred EEEecCCccCCCCCHHHHHHHH----------HHcCC--------------chhHHHHHHHHhh----------CCCEEE
Q 048308 62 GFVAHSNVFYLHLTVTETLVFI----------ALFRL--------------PIKRVSRAQELLI----------NPSLLF 107 (413)
Q Consensus 62 ~~v~q~~~~~~~lTv~e~l~f~----------~~~~~--------------~~krvsia~~l~~----------~p~lll 107 (413)
++++|++ .++++|+.|++.+. ...++ .++|+.||++|+. +|++++
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred EEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 6787764 35555555443221 11111 3489999999999 999999
Q ss_pred EeCCCCCCCHHHHHHH
Q 048308 108 LDEPASGLDSTIAKQI 123 (413)
Q Consensus 108 lDEPtsgLD~~~~~~i 123 (413)
|||||+|||+.++.++
T Consensus 190 LDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKV 205 (413)
T ss_dssp HHHHTTCCTTCCHHHH
T ss_pred cCcccccCCHHHHHHH
Confidence 9999999999998877
No 71
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.66 E-value=5.1e-17 Score=155.40 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGET-RGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+|+|+| +++|++++|+||||||||||+++|+|.++ +. +|+|.++|.+.....+...+++.|...-...
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~------- 84 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDT------- 84 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHHHhCCCH-------
Confidence 688999 89999999999999999999999999875 34 7999999987643333344566664211110
Q ss_pred HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEec
Q 048308 81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVG 135 (413)
Q Consensus 81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G 135 (413)
..-|++||++|..+|+++++|||| |..+...++ ....|+.+..-
T Consensus 85 --------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t 129 (261)
T 2eyu_A 85 --------KSFADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGT 129 (261)
T ss_dssp --------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEE
T ss_pred --------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEE
Confidence 113799999999999999999999 998877654 23468876553
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.62 E-value=3.4e-16 Score=154.54 Aligned_cols=129 Identities=15% Similarity=0.089 Sum_probs=94.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+++++|+.+++|++++|+||||||||||+|+|+|.+++ .+|.|.++|.+... ..++.++++.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~g------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFG------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECB-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeC-------------
Confidence 57889999999999999999999999999999999874 57999999875311 24456777763
Q ss_pred HHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc-EEEecCcchHhHHHHhcCCCCCCCCChh
Q 048308 80 LVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN-SLHVGKGDGVMSYFVGIGFEPSAAMNPS 158 (413)
Q Consensus 80 l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~-~v~~G~~~~~~~~f~~~g~~~p~~~n~a 158 (413)
....+|+.||++|..+|+++++||||+. .....+--+..|+ ++..-. |... ....+
T Consensus 225 -------gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~~l~~~~~g~~tvi~t~------------H~~~-~~~~~ 281 (330)
T 2pt7_A 225 -------GNITSADCLKSCLRMRPDRIILGELRSS---EAYDFYNVLCSGHKGTLTTL------------HAGS-SEEAF 281 (330)
T ss_dssp -------TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHHHHHHHHTTCCCEEEEE------------ECSS-HHHHH
T ss_pred -------CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHHHHHHHhcCCCEEEEEE------------cccH-HHHHh
Confidence 3345999999999999999999999982 3333333344554 332211 2211 23457
Q ss_pred HHHHHhhCCc
Q 048308 159 DFLLDLANGV 168 (413)
Q Consensus 159 d~~~~~~~~~ 168 (413)
|.++.+..|.
T Consensus 282 dri~~l~~g~ 291 (330)
T 2pt7_A 282 IRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHTS
T ss_pred hhheehhcCC
Confidence 8888887654
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.61 E-value=1.3e-17 Score=160.33 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=71.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHHHHHHHcCC-----
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL----- 88 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~----- 88 (413)
.++|+||||||||||+|+|+|... +.+|+|.++|.+... ..++.++|++|++.+++.+||.||+.|......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999876 467999999987654 335679999999999999999998876532210
Q ss_pred ---------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcC
Q 048308 89 ---------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSE 128 (413)
Q Consensus 89 ---------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~ 128 (413)
.+||+.+||+++. ++++|||+.|||+.....+--+.+
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~ 139 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSK 139 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHh
Confidence 1268888888765 999999999999988665544443
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.60 E-value=1.3e-16 Score=144.04 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=68.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHHHHHH-------Hc
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETLVFIA-------LF 86 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~-------~~ 86 (413)
.++|+||||||||||+|+|+|.+.. ...|... .+.. +..++.++|++|+. ++.+++ ++. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~~~~~~~~~~~ 70 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FSSKFFTSKKLV 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-EEETTCCCSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HHhhcCCccccc
Confidence 5899999999999999999998741 2233211 1111 12356789999875 122222 000 00
Q ss_pred C--------CchhHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH-Hhc-CCc
Q 048308 87 R--------LPIKRVSRAQE-----LLINPSLLFLDE--PASGLDSTIAKQIL-LNS-EGN 130 (413)
Q Consensus 87 ~--------~~~krvsia~~-----l~~~p~llllDE--PtsgLD~~~~~~i~-ll~-~G~ 130 (413)
+ ..+||++||++ ++.+|++++||| ||++||+.....+. ++. .|.
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~ 131 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTS
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCC
Confidence 0 11389999996 999999999999 99999999998885 333 344
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.58 E-value=1.6e-17 Score=162.90 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=74.8
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCc
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLP 89 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~ 89 (413)
+++|++++|+||||||||||+++|+|.+++ ..| . +.+++|+|++.+++. |++|++.+....+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H-------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C-------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C-------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence 799999999999999999999999998763 112 1 458999999998888 999987542111111
Q ss_pred -------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 90 -------------------------------IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 90 -------------------------------~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
.+|+.+|++++.+|+++|+|||+..+|.
T Consensus 151 ~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 ESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1688899999999999999999999985
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.56 E-value=2.6e-17 Score=160.62 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=73.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhcc-ccEEEEecCCccCCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVK-RKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~-~~~~~v~q~~~~~~~lTv 76 (413)
+|+|+|+.+++||+++|+||||||||||+++|+|.+ +|+|...+.... ...+ +.+++.++... .+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~-----~~ 184 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVLSFANHKSHFWLASLADTRAALVDDATH-----AC 184 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEECGGGTTSGGGGGGGTTCSCEEEEEECH-----HH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEEEEecCccccccccHHHHhhccCccccH-----HH
Confidence 689999999999999999999999999999999987 488865443221 1223 25666543110 23
Q ss_pred HHHHHHHH--H-----c-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 77 TETLVFIA--L-----F-RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 77 ~e~l~f~~--~-----~-~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.+.+.-.. . + +..+|| ||+|+.+|++|+ ||+||+.+...+.
T Consensus 185 ~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 185 WRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp HHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred HHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 33332100 0 0 012367 999999999999 9999998887663
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.55 E-value=8.5e-18 Score=154.58 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=71.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++| -++++||+++|+||||||||||+|+|+|.++ ...+.+.+.+.+.....++.++|++|+...++.+|+.|++.
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 4566 6899999999999999999999999999875 33343333333222223456899999877666666655441
Q ss_pred HH----H--H-cCCc-----------------hhHHHH-------HH---HHhhCCCEEEEeCCCCCC----CHHHHHHH
Q 048308 82 FI----A--L-FRLP-----------------IKRVSR-------AQ---ELLINPSLLFLDEPASGL----DSTIAKQI 123 (413)
Q Consensus 82 f~----~--~-~~~~-----------------~krvsi-------a~---~l~~~p~llllDEPtsgL----D~~~~~~i 123 (413)
.. . . .+.+ .+++.+ .. +|+.+|++++|||||+|+ |+..+.++
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l 166 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRL 166 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 10 0 0 0000 011111 11 466789999999999998 66677666
No 78
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.53 E-value=1.3e-14 Score=145.12 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=38.2
Q ss_pred hHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEec
Q 048308 91 KRVSRAQELL------INPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVG 135 (413)
Q Consensus 91 krvsia~~l~------~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G 135 (413)
||++||++|+ .+|++++|||||+|||+.++..++ +..+|++|..-
T Consensus 286 qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i 341 (365)
T 3qf7_A 286 ALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI 341 (365)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE
T ss_pred HHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 8999999999 699999999999999999998884 33467776653
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.51 E-value=6.1e-15 Score=150.85 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=108.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc---ccCh---------hccccEEEEecC-C
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PLSR---------TVKRKTGFVAHS-N 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~---------~~~~~~~~v~q~-~ 68 (413)
+|+++ +.+.+||.++|+||||||||||+++|+|..+ ...|.|.++|. +..+ ..++.++|++|+ +
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~ 223 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV 223 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence 68899 9999999999999999999999999999987 46799999998 3321 245679999995 6
Q ss_pred ccCCCCCHHHHHHHHHHc-CC--c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh---
Q 048308 69 VFYLHLTVTETLVFIALF-RL--P---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN--- 126 (413)
Q Consensus 69 ~~~~~lTv~e~l~f~~~~-~~--~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll--- 126 (413)
..++.+||.+++.+.+.. +. . .||++|| +.+|++ |+|||+.+...+. ++
T Consensus 224 ~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 224 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence 677889999999876532 10 0 1788888 888887 9999999999884 22
Q ss_pred -c---C-Cc-----EEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 127 -S---E-GN-----SLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 127 -~---~-G~-----~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+ + |. +|.. .+|+.. ...+|.++.+.+|..
T Consensus 295 ~~~~~~~GsiT~~~tVlv------------~tHdl~--~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 295 GNGIHGGGSITAFYTVLT------------EGDDQQ--DPIADSARAILDGHI 333 (438)
T ss_dssp SCCSTTSCEEEEEEEEEC------------SSSCSC--CHHHHHHHHHSSEEE
T ss_pred HhccCCCCcccceeEEEE------------eCCCcc--chhhceEEEEeCcEE
Confidence 1 1 43 3333 345554 566899998888754
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.51 E-value=2.9e-17 Score=152.68 Aligned_cols=116 Identities=17% Similarity=0.063 Sum_probs=71.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC-
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT- 75 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT- 75 (413)
-|+|||+++++|++++|+||||||||||+|+|+|.+ + |+|.+ |.+... ..++.++|++|+...++.++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 378999999999999999999999999999999987 2 77777 554321 22456788888754443221
Q ss_pred ---------H--------HHHHHHHH-HcC----------CchhHHHH-----HHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 76 ---------V--------TETLVFIA-LFR----------LPIKRVSR-----AQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 76 ---------v--------~e~l~f~~-~~~----------~~~krvsi-----a~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
+ ++.+.-.. ..+ ..++|+.+ +++++.+|++++|||||+++|..+...
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~ 165 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ 165 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence 0 11111011 000 01267777 778888888889999999998876665
Q ss_pred H
Q 048308 123 I 123 (413)
Q Consensus 123 i 123 (413)
+
T Consensus 166 i 166 (218)
T 1z6g_A 166 I 166 (218)
T ss_dssp H
T ss_pred H
Confidence 5
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.49 E-value=2.6e-15 Score=141.56 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=75.3
Q ss_pred CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
++|+|+|+++++|++++|+||||||||||+|+|+|.+ |.+.++ ..++.++|++|++ +++.+|++|++
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~~ 79 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVLTAEQKA 79 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-CccccCHhHhh
Confidence 3799999999999999999999999999999999865 222222 2356799999985 67789999988
Q ss_pred HHHHHcC-C--ch------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhc
Q 048308 81 VFIALFR-L--PI------------------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNS 127 (413)
Q Consensus 81 ~f~~~~~-~--~~------------------------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~ 127 (413)
.+..... . +. +|+.+ ++++.+|+++++|||....|..... +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~----~- 153 (245)
T 2jeo_A 80 KALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRD----M- 153 (245)
T ss_dssp HHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHT----T-
T ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHH----h-
Confidence 7643211 0 11 23333 2456789999999999888865221 1
Q ss_pred CCcEEEecCc
Q 048308 128 EGNSLHVGKG 137 (413)
Q Consensus 128 ~G~~v~~G~~ 137 (413)
.+.+++.-+.
T Consensus 154 ~~~~i~v~th 163 (245)
T 2jeo_A 154 FHLRLFVDTD 163 (245)
T ss_dssp CSEEEEEECC
T ss_pred cCeEEEEECC
Confidence 2666666443
No 82
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.47 E-value=2e-14 Score=141.20 Aligned_cols=44 Identities=27% Similarity=0.183 Sum_probs=36.0
Q ss_pred hHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEe
Q 048308 91 KRVSRAQELL----INPSLLFLDEPASGLDSTIAKQIL----LNSEGNSLHV 134 (413)
Q Consensus 91 krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~ 134 (413)
||+.||++|+ .+|++++|||||++||+..+..+. -+.+|.++..
T Consensus 226 q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~ 277 (322)
T 1e69_A 226 ALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIV 277 (322)
T ss_dssp HHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 8999999997 578999999999999999998884 1245665555
No 83
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.47 E-value=1.3e-15 Score=161.87 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=77.1
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCCCCHHHHHHHHHHc--
Q 048308 16 LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLHLTVTETLVFIALF-- 86 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~-- 86 (413)
++|+||||||||||+++|+|+..| ..+|.|.++|.++. ..+++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999753 25799999998741 24566799999999999999999999886432
Q ss_pred ----CCchhHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHH
Q 048308 87 ----RLPIKRVSRAQELLINPSLLFLDEP------ASGLDSTIAKQI 123 (413)
Q Consensus 87 ----~~~~krvsia~~l~~~p~llllDEP------tsgLD~~~~~~i 123 (413)
+...+++.++.....+|+++++||| |+|||+..+.++
T Consensus 127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i 173 (608)
T 3szr_A 127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI 173 (608)
T ss_dssp CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence 1122334444445568999999999 999999998777
No 84
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.47 E-value=2.2e-15 Score=140.35 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=89.5
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCH----HHHHHHHH
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV----TETLVFIA 84 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv----~e~l~f~~ 84 (413)
..++|++++|+||||||||||+|+|+|..++....|.|.+++.+..+..++.++|++|+...++.+|+ .|++.+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 46899999999999999999999999987632478999998877654445678999998877777777 55554322
Q ss_pred Hc-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEecCc
Q 048308 85 LF-RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVGKG 137 (413)
Q Consensus 85 ~~-~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G~~ 137 (413)
.. +.+. .-+.+++..+++++|| ||+..+.++. .+.+|.+|+.-++
T Consensus 92 ~~yg~~~---~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th 138 (219)
T 1s96_A 92 NYYGTSR---EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPP 138 (219)
T ss_dssp EEEEEEH---HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred ccCCCCH---HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECC
Confidence 21 1222 2345677889999999 9999999995 3447888887664
No 85
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.46 E-value=2.3e-14 Score=139.93 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=85.2
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc--cccEEEEecCCccCCCCCHHHHHH
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV--KRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~--~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|++++|+||||||||||+++|+|.+++ ..|+|.++|.+... .+ ++.+++++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999999874 46999999876531 11 346899999998889999999998
Q ss_pred HHHHcCC---------------------chhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHH
Q 048308 82 FIALFRL---------------------PIKRVSRAQELLINPS--LLFLDEPASGLDSTIAK 121 (413)
Q Consensus 82 f~~~~~~---------------------~~krvsia~~l~~~p~--llllDEPtsgLD~~~~~ 121 (413)
++...+. .++|+.|||+++.+|+ ++.|| |++|.|.....
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~ 240 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQA 240 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHH
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHH
Confidence 7643211 1268999999999999 67788 78887765543
No 86
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=3.8e-14 Score=141.20 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=80.3
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL 88 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~ 88 (413)
..++|++++|+||||||||||+++|+|.+++ ...|.|...+.+.....+...+++.|........+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH----------
Confidence 5688999999999999999999999998753 12466665555544333444567777665544555554
Q ss_pred chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEecC
Q 048308 89 PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVGK 136 (413)
Q Consensus 89 ~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G~ 136 (413)
.||++|..+|+++++|||| |..+...++ ....|+++..-.
T Consensus 188 -----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~vl~t~ 228 (356)
T 3jvv_A 188 -----ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLVFGTL 228 (356)
T ss_dssp -----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEE
T ss_pred -----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEEEEEE
Confidence 7889999999999999999 788776654 445788776543
No 87
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=9.8e-16 Score=141.45 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=73.7
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-----ETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-----~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|-+++||+++|+||||||||||+++|+|...+. ...|.+.+++..... .+.++++.|+..+.+. |+.|++.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 679999999999999999999999999954321 134578888764211 1235566666555554 77777644
Q ss_pred HHHcCCch--hHHHHHHHHhh-------CCCEEEEeCCCCCCCHH
Q 048308 83 IALFRLPI--KRVSRAQELLI-------NPSLLFLDEPASGLDST 118 (413)
Q Consensus 83 ~~~~~~~~--krvsia~~l~~-------~p~llllDEPtsgLD~~ 118 (413)
........ +.+..+.+++. +|+++++||||+++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 97 ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 22111111 23455556655 99999999999999983
No 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=7.7e-15 Score=129.85 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=63.3
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++++|+++++||+++|+||||||||||+|+|+|.+ + .+|+|.++|.++.+..... .+++|+..++ .+||.|++.
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~-~~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA-GKMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET-TEEEEEEECT-TCSCTTHHH
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC-Ccceeccccc-cCCcHHHHH
Confidence 578999999999999999999999999999999987 4 5699999998764322111 2788988778 899999986
Q ss_pred H
Q 048308 82 F 82 (413)
Q Consensus 82 f 82 (413)
+
T Consensus 97 ~ 97 (158)
T 1htw_A 97 F 97 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.42 E-value=3.8e-15 Score=139.26 Aligned_cols=127 Identities=17% Similarity=0.089 Sum_probs=74.4
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHh--CCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHHH
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLG--GRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~--g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
.|-+++||+++|+||||||||||+++|+ |... ...|.+.+++..... ...+.+++++|+....+.+++.+...
T Consensus 24 ~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 3589999999999999999999999999 5522 234666666654322 12234667777654444444444332
Q ss_pred HHHH---------c-CCc-hhHHHHHHH--HhhCCCEEEEeCCCCCCC-----HHHHHHHH-----HhcCCcEEEec
Q 048308 82 FIAL---------F-RLP-IKRVSRAQE--LLINPSLLFLDEPASGLD-----STIAKQIL-----LNSEGNSLHVG 135 (413)
Q Consensus 82 f~~~---------~-~~~-~krvsia~~--l~~~p~llllDEPtsgLD-----~~~~~~i~-----ll~~G~~v~~G 135 (413)
.... . ... .+......+ -..+|+++++||||++|| ...+..+. +-++|.++..-
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 102 SVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILT 178 (251)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEE
T ss_pred cccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 2110 0 000 111221212 247999999999999997 55554342 22357776653
No 90
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.41 E-value=1.3e-13 Score=138.22 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=82.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGET-RGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+|++++ +++|++++|+||||||||||+++|+|.+++ . +|.|...+.+.....++.+++|+|...-...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~------- 195 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDT------- 195 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecccHhhhhccCceEEEeeecCCCH-------
Confidence 456665 789999999999999999999999998752 3 6999877766543345568899985311100
Q ss_pred HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEec
Q 048308 81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVG 135 (413)
Q Consensus 81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G 135 (413)
..-+.+|+++|..+|+++++|||+ |..+....+ ....|+.+..-
T Consensus 196 --------~~~~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~~~g~~vi~t 240 (372)
T 2ewv_A 196 --------KSFADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGT 240 (372)
T ss_dssp --------SCSHHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHTTTCEEEEC
T ss_pred --------HHHHHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHHhcCCEEEEE
Confidence 012568899999999999999999 777765543 33468877553
No 91
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.39 E-value=1.1e-14 Score=157.96 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=80.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+. |++++|+||||||||||||+|+|.... ...|.+. +..+..+++++| +++.+++.|++.
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v-------pa~~~~i~~v~~---i~~~~~~~d~l~ 633 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV-------PAEEAHLPLFDG---IYTRIGASDDLA 633 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB-------SSSEEEECCCSE---EEEECCC-----
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee-------ehhccceeeHHH---hhccCCHHHHHH
Confidence 67899998 999999999999999999999997421 1123321 112334677766 567889999986
Q ss_pred HHHHcCCchhHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHH--HhcCCcEEEecCc
Q 048308 82 FIALFRLPIKRVSRAQEL--LINPSLLFLDEP---ASGLDSTIA-KQIL--LNSEGNSLHVGKG 137 (413)
Q Consensus 82 f~~~~~~~~krvsia~~l--~~~p~llllDEP---tsgLD~~~~-~~i~--ll~~G~~v~~G~~ 137 (413)
..... ...+++.+++++ +++|++++|||| |++||..+. ..++ +.+.|.++.+-+.
T Consensus 634 ~g~S~-~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH 696 (765)
T 1ewq_A 634 GGKST-FMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATH 696 (765)
T ss_dssp -CCSH-HHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred hcccH-HHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 42110 113678888888 999999999999 999998764 3442 3345665555443
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.39 E-value=2e-13 Score=152.40 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=75.4
Q ss_pred ccccceeEEec-------CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC------
Q 048308 2 ILKGIRGVSSL-------GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN------ 68 (413)
Q Consensus 2 iL~~vs~~~~~-------Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~------ 68 (413)
+++|+++.+++ |++++|+||||||||||||++ |+... ..+..+||+|+.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------------~aqiG~~Vpq~~~~l~v~ 832 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------------MAQMGCYVPAEVCRLTPI 832 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------------HHTTTCCEESSEEEECCC
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------------HhheeEEeccCcCCCCHH
Confidence 78999999987 999999999999999999999 87531 011122555542
Q ss_pred -ccCCCCCHHHHH-----HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH----H--HhcC-CcEEEec
Q 048308 69 -VFYLHLTVTETL-----VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----L--LNSE-GNSLHVG 135 (413)
Q Consensus 69 -~~~~~lTv~e~l-----~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i----~--ll~~-G~~v~~G 135 (413)
.++..+...+.+ .|... .+++++|++++++|++++||||++|+|+.....+ + +..+ |..+.+-
T Consensus 833 d~I~~rig~~d~~~~~~stf~~e----m~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~ 908 (1022)
T 2o8b_B 833 DRVFTRLGASDRIMSGESTFFVE----LSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS 908 (1022)
T ss_dssp SBEEEECC---------CHHHHH----HHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHcCCHHHHhhchhhhHHH----HHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 111122222222 12211 2679999999999999999999999998875332 1 3444 7655554
Q ss_pred C
Q 048308 136 K 136 (413)
Q Consensus 136 ~ 136 (413)
+
T Consensus 909 T 909 (1022)
T 2o8b_B 909 T 909 (1022)
T ss_dssp C
T ss_pred e
Confidence 4
No 93
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.37 E-value=8.3e-14 Score=126.78 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=83.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCC---------------
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLT--------------- 75 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lT--------------- 75 (413)
||+++|+||||||||||+++|+|.++ .+| |.++|....+ ..++.++|++|+.. ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~~~l~~~~~~~~~~~~~ 74 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTRGPLSRVGLEPPPGKRE 74 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCEEEEEECCCCCCSSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cceehhhcccccCCccccc
Confidence 78999999999999999999999875 347 8777765532 34667899998731 1000
Q ss_pred --HHH---HHHHHHHcCCch-hHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHH-HhcCCcEEEecCcchHhHHHHh
Q 048308 76 --VTE---TLVFIALFRLPI-KRVSRAQELLINPSLLFLDE--PASGLDSTIAKQIL-LNSEGNSLHVGKGDGVMSYFVG 146 (413)
Q Consensus 76 --v~e---~l~f~~~~~~~~-krvsia~~l~~~p~llllDE--PtsgLD~~~~~~i~-ll~~G~~v~~G~~~~~~~~f~~ 146 (413)
+.+ .+.-..+.++.. +++ |+|+..+|+++++|| |+..+|......+. ++++.+.+-.|.. .
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~--a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti--------~ 144 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNA--DCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTI--------P 144 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCC--CCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEEC--------C
T ss_pred cccceEEEcchHHHHHHHHHHhhh--hHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEe--------e
Confidence 000 000000001000 111 125688999999999 89999998877774 4444433333221 0
Q ss_pred cCCCCCCCCChhHHHHHhhCCccC
Q 048308 147 IGFEPSAAMNPSDFLLDLANGVVS 170 (413)
Q Consensus 147 ~g~~~p~~~n~ad~~~~~~~~~~~ 170 (413)
+.|+.+ ....|.+....++++.
T Consensus 145 vsh~~~--~~~vd~i~~~~~~~i~ 166 (189)
T 2i3b_A 145 VPKGKP--LALVEEIRNRKDVKVF 166 (189)
T ss_dssp CCCSSC--CTTHHHHHTTCCSEEE
T ss_pred cCCCCc--hHHHHHHeecCCcEEE
Confidence 113322 2456777666665544
No 94
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.36 E-value=5.8e-13 Score=146.77 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=73.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+.+++|++++|+||||||||||||++++.... ...| ..... ..+.+..-+.++..+.+.+++.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g------~~vpa----~~~~i~~~d~i~~~ig~~d~l~ 730 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIG------SYVPA----EEATIGIVDGIFTRMGAADNIY 730 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHT------CCBSS----SEEEEECCSEEEEEC-------
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcC------ccccc----hhhhhhHHHHHHHhCChHHHHH
Confidence 78899999999999999999999999999999754210 0001 00000 0111222233444555566553
Q ss_pred HHHHc--CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH------Hhc-CCcEEEecCc
Q 048308 82 FIALF--RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL------LNS-EGNSLHVGKG 137 (413)
Q Consensus 82 f~~~~--~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~------ll~-~G~~v~~G~~ 137 (413)
..... .--.+++.++++ +++|++++|||||+|||+.....+. +.. .|.++.+-+.
T Consensus 731 ~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH 794 (918)
T 3thx_B 731 KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH 794 (918)
T ss_dssp ---CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 21100 001256666665 8999999999999999999887763 223 4766665554
No 95
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.34 E-value=7.4e-13 Score=132.15 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=77.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-Ch-hccccEEEEe-cCCcc--CCCCCH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-SR-TVKRKTGFVA-HSNVF--YLHLTV 76 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-~~-~~~~~~~~v~-q~~~~--~~~lTv 76 (413)
+++++|+.+++|++++|+||||||||||+|+|+|.+++ .+|.|.++|... .. ..++.+++++ |++.. ++..|+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 34899999999999999999999999999999999874 579999998532 11 2456789998 76543 356777
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc
Q 048308 77 TETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN 130 (413)
Q Consensus 77 ~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~ 130 (413)
++++.. ++..+|+.+++||+.. ......+.-+..|+
T Consensus 242 ~~~i~~---------------~l~~~pd~~l~~e~r~---~~~~~~l~~l~~g~ 277 (361)
T 2gza_A 242 ATLLRS---------------CLRMKPTRILLAELRG---GEAYDFINVAASGH 277 (361)
T ss_dssp HHHHHH---------------HTTSCCSEEEESCCCS---THHHHHHHHHHTTC
T ss_pred HHHHHH---------------HHhcCCCEEEEcCchH---HHHHHHHHHHhcCC
Confidence 777754 4456899999999985 23333333455664
No 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.34 E-value=1e-12 Score=145.10 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHH--------hCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTL--------GGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~ 73 (413)
+++|+++.+++|++++|+||||||||||||++ .|..-+ .++.. ++ .-+.++..
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~--------------~~---~~d~i~~~ 711 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE--------------VS---IVDCILAR 711 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE--------------EE---CCSEEEEE
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc--------------ch---HHHHHHHh
Confidence 67899999999999999999999999999999 554332 12211 00 00111112
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 74 LTVTETLVFIALFRLPIKRVSRAQEL--LINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 74 lTv~e~l~f~~~~~~~~krvsia~~l--~~~p~llllDEPtsgLD~~~~~~i 123 (413)
+...+++.-. .-....++..+|+.+ +++|++++|||||+|+|+.....+
T Consensus 712 ig~~d~l~~~-lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i 762 (934)
T 3thx_A 712 VGAGDSQLKG-VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL 762 (934)
T ss_dssp CC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred cCchhhHHHh-HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence 2222222110 000112566666666 899999999999999999887666
No 97
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=9.3e-14 Score=141.13 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=76.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+.+ +|+|+||||||||+|+|+|...+....|.+..++.+ ....+.++++.|++.+++.+||.||+.
T Consensus 26 vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 26 VKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCEEEEEECC------CEEEEEEECC-
T ss_pred EecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--ceeeeeEEEEEecCCcccceeeeechh
Confidence 688999987 999999999999999999986521212222222111 112345788888887777888888876
Q ss_pred HHHHcCC------------------chhHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHhcC-CcEEEecCcc
Q 048308 82 FIALFRL------------------PIKRVSRAQELLINPS---LLFLDEPA-SGLDSTIAKQILLNSE-GNSLHVGKGD 138 (413)
Q Consensus 82 f~~~~~~------------------~~krvsia~~l~~~p~---llllDEPt-sgLD~~~~~~i~ll~~-G~~v~~G~~~ 138 (413)
+...... -.+|+.||++++.+|+ ++++|||| .|||+....-+--+.+ ..+|..+...
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~ 177 (418)
T 2qag_C 98 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKA 177 (418)
T ss_dssp ----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEEST
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcc
Confidence 6432210 0145668899999999 99999999 6999887544433443 4566666644
Q ss_pred h
Q 048308 139 G 139 (413)
Q Consensus 139 ~ 139 (413)
+
T Consensus 178 D 178 (418)
T 2qag_C 178 D 178 (418)
T ss_dssp T
T ss_pred c
Confidence 3
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.33 E-value=2.1e-14 Score=142.80 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=79.3
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCe----eEE-EEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGET----RGN-IDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~----~G~-i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+|.+++|++++|+||||||||||++.+++.....+. .|. |++++.... .++.++++.|...+.+. ++.|++.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~v~~ni~ 201 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIY 201 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-HHGGGEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-HHhhCEE
Confidence 688999999999999999999999999997632122 367 888886541 13346677777655544 6666654
Q ss_pred HHHHcC--CchhHHHHHHHHh-------hCCCEEEEeCCCCCCCHH
Q 048308 82 FIALFR--LPIKRVSRAQELL-------INPSLLFLDEPASGLDST 118 (413)
Q Consensus 82 f~~~~~--~~~krvsia~~l~-------~~p~llllDEPtsgLD~~ 118 (413)
+..... ...+++.++++++ .+|+++++||||+++|+.
T Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 202 VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp EEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 421110 0126788888988 689999999999999985
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.33 E-value=1.7e-13 Score=141.06 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=87.2
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------h--ccccEEEEecCCccCCC
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------T--VKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~--~~~~~~~v~q~~~~~~~ 73 (413)
+++|+.+++|++++|+|+||||||||+++|+|++.+ ..|+|.++|.+... . .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 689999999999999999999999999999998763 46999997654321 1 24568999999888889
Q ss_pred CCHHHHHHHHHHcCCc-----------h---------hHHHHHHHHh-hCC-CEEEEeCCCCCCCHHHHH
Q 048308 74 LTVTETLVFIALFRLP-----------I---------KRVSRAQELL-INP-SLLFLDEPASGLDSTIAK 121 (413)
Q Consensus 74 lTv~e~l~f~~~~~~~-----------~---------krvsia~~l~-~~p-~llllDEPtsgLD~~~~~ 121 (413)
+||++++.++..-+.. . |++.+++.+. ..| .+++..++|+|.|.....
T Consensus 362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a 431 (503)
T 2yhs_A 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431 (503)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH
Confidence 9999999987543211 0 4556666543 446 466666699998776543
No 100
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.33 E-value=2.1e-13 Score=148.70 Aligned_cols=123 Identities=14% Similarity=0.084 Sum_probs=75.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV 81 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 81 (413)
+++|+|+. ++|++++|+||||||||||||+|+|...... . |..... .+..++++.| +++.+++.|++.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~------G~~vpa-~~~~i~~~~~---i~~~~~~~d~l~ 664 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-I------GSYVPA-QKVEIGPIDR---IFTRVGAADDLA 664 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-T------TCCBSS-SEEEECCCCE---EEEEEC------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-c------Ccccch-hcccceeHHH---HHhhCCHHHHHH
Confidence 68999999 9999999999999999999999998632100 1 111111 1223555544 567778888876
Q ss_pred HHHHcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH----H--Hhc-CCcEEEecC
Q 048308 82 FIALFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----L--LNS-EGNSLHVGK 136 (413)
Q Consensus 82 f~~~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i----~--ll~-~G~~v~~G~ 136 (413)
.....- ...+++..+...+++|++++||||++|+|+.....+ + +.+ .|..+.+-+
T Consensus 665 ~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~T 727 (800)
T 1wb9_A 665 SGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727 (800)
T ss_dssp -----CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 432110 112455555566899999999999999998665554 1 334 366655544
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.31 E-value=1.3e-14 Score=132.98 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=70.0
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC--CCCCHHHHHHHHHH--
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY--LHLTVTETLVFIAL-- 85 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~f~~~-- 85 (413)
.++|++++|+||||||||||+|+|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence 579999999999999999999999997641 478899988776 56788776543210
Q ss_pred --------------cCC------------------chhHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHH
Q 048308 86 --------------FRL------------------PIKRVSRAQELLINPSLLFLDEPASG-------LDSTIAKQI 123 (413)
Q Consensus 86 --------------~~~------------------~~krvsia~~l~~~p~llllDEPtsg-------LD~~~~~~i 123 (413)
+++ ..+|+.++++++.+|+++++||||++ ||+....++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~ 139 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF 139 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence 000 01356778888899999999999999 887766655
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.31 E-value=2.2e-14 Score=150.04 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=87.0
Q ss_pred Ccccccee-EEecCcEEEEECCCCCCHHHHHHH--HhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCC-
Q 048308 1 MILKGIRG-VSSLGELLAILGPSGRGKTTLPTT--LGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLH- 73 (413)
Q Consensus 1 ~iL~~vs~-~~~~Ge~~~ilG~sGsGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~- 73 (413)
++|+|||+ .+++||+++|+||||||||||+++ ++|..++ .+|.|.++|.+... ...+.+|+++|+....++
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l 103 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL 103 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE
Confidence 36899999 999999999999999999999999 6888753 46999999987432 223457888887432110
Q ss_pred --CCHHH---HHHHHHHcCCchhHHHHHHHHh-hCCCEEEEeCCCC-----CCCHHHHHHHH-----HhcCCcEEEe
Q 048308 74 --LTVTE---TLVFIALFRLPIKRVSRAQELL-INPSLLFLDEPAS-----GLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 74 --lTv~e---~l~f~~~~~~~~krvsia~~l~-~~p~llllDEPts-----gLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
+++.+ .......+.+......+..+|. .+|+++++||||+ +||+..+.++. +-.+|.++..
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~ 180 (525)
T 1tf7_A 104 FILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM 180 (525)
T ss_dssp EEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 11100 0000000001113334555664 7999999999998 46888887773 2235766655
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.28 E-value=3.8e-13 Score=129.93 Aligned_cols=110 Identities=12% Similarity=-0.007 Sum_probs=64.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcccCh-hccccEEEEecCCcc--CCCCCHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNPLSR-TVKRKTGFVAHSNVF--YLHLTVT 77 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~-~~~~~~~~v~q~~~~--~~~lTv~ 77 (413)
+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.+.+. ...+.+..+.++..+ ++.++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~ 101 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKRE 101 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccC
Confidence 68999999999999999999999999999999998652 235 56544333322 222222222222211 1111111
Q ss_pred -----H---HHHHHH-HcC-----C-c-------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308 78 -----E---TLVFIA-LFR-----L-P-------IKRVSRAQELLINPSLLFLDEPASG 114 (413)
Q Consensus 78 -----e---~l~f~~-~~~-----~-~-------~krvsia~~l~~~p~llllDEPtsg 114 (413)
+ ...-.. ..+ . . .+|+. |+++..+|+++++||||+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 102 IIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp HHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 0 000000 001 1 0 14555 7789999999999999993
No 104
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.25 E-value=1.8e-11 Score=122.01 Aligned_cols=33 Identities=27% Similarity=0.130 Sum_probs=30.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
.++++++.+++| +++|+||||||||||+++|++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 467899999999 999999999999999999986
No 105
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=2.9e-13 Score=132.14 Aligned_cols=106 Identities=14% Similarity=0.244 Sum_probs=78.2
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR 87 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~ 87 (413)
++|++++|+||||||||||+++|+|.+...+.+|+|.+ +|.......++.++++ |+..+++.+|+.+++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 89999999999999999999999997651125688988 8876544334457788 7777788999999998876553
Q ss_pred Cch-------------hHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 88 LPI-------------KRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 88 ~~~-------------krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
... +|+..+.+.+.+|+++++|.|....|.
T Consensus 157 ~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 157 SGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred CCCCceecccccccccCcccccceecCCCCEEEECchhhCCCc
Confidence 211 233222233467899999999988773
No 106
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=2.6e-13 Score=127.74 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=76.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHH---
Q 048308 12 LGELLAILGPSGRGKTTLPTTLG---GRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIAL--- 85 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~--- 85 (413)
++++++|+||||||||||+++|+ |... ...|+|.++|.+......+.+.++.|+..+++..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999 8865 356888777654322222334455666677777888888865431
Q ss_pred -----c-CCchh-----HH------------------HHHH--------------HH-hhCCCEEEEe----CCCCCCCH
Q 048308 86 -----F-RLPIK-----RV------------------SRAQ--------------EL-LINPSLLFLD----EPASGLDS 117 (413)
Q Consensus 86 -----~-~~~~k-----rv------------------sia~--------------~l-~~~p~llllD----EPtsgLD~ 117 (413)
+ +.+.. .+ .+.+ ++ +.+|+++++| |||+|||.
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 1 11110 00 0222 22 7899999999 99999999
Q ss_pred HHHHHHH
Q 048308 118 TIAKQIL 124 (413)
Q Consensus 118 ~~~~~i~ 124 (413)
.+...+.
T Consensus 184 ~~~~~i~ 190 (246)
T 2bbw_A 184 DKPEAVA 190 (246)
T ss_dssp GSHHHHH
T ss_pred CcHHHHH
Confidence 8877763
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.23 E-value=2.4e-12 Score=125.26 Aligned_cols=122 Identities=21% Similarity=0.172 Sum_probs=59.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEEEECCcccChh-ccccEEEEecCCccCCCCCHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR-LSTGETRGNIDYNNNPLSRT-VKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~-~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
+++|+++++ +|+||||||||||+|+|.|. .. +.+| +.++|.+.... ..+.+++++|++.....+|+.|+
T Consensus 13 ~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt 83 (301)
T 2qnr_A 13 VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDT 83 (301)
T ss_dssp -----CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEEEEE
T ss_pred EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhh
Confidence 688999988 99999999999999999997 44 3567 77777665432 13457888888777777777777
Q ss_pred HHHHHHcC-------------------------CchhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHhcCC-cEE
Q 048308 80 LVFIALFR-------------------------LPIKRVSRAQELLINPSLLFLDEPAS-GLDSTIAKQILLNSEG-NSL 132 (413)
Q Consensus 80 l~f~~~~~-------------------------~~~krvsia~~l~~~p~llllDEPts-gLD~~~~~~i~ll~~G-~~v 132 (413)
..+..... ..+||+.+|++++ ++++||||+ |||+.....+--+.++ .++
T Consensus 84 ~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~ii 159 (301)
T 2qnr_A 84 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIV 159 (301)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEE
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEE
Confidence 66532211 0012322222221 999999998 5999875433333332 344
Q ss_pred EecC
Q 048308 133 HVGK 136 (413)
Q Consensus 133 ~~G~ 136 (413)
-.+.
T Consensus 160 lV~~ 163 (301)
T 2qnr_A 160 PVIA 163 (301)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 4444
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.22 E-value=6.3e-12 Score=124.77 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=94.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------hccccEEEEecCCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------TVKRKTGFVAHSNVF 70 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~v~q~~~~ 70 (413)
+|+++ +.+.+||+++|+||||||||||+++|+|..++ ..|.|.+.|++..+ ..++.+.++.|.+.-
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~ 137 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRP 137 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSC
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCC
Confidence 68899 99999999999999999999999999999874 57999888864211 134457788875421
Q ss_pred -CCCCCHHHHHHHHH-HcCC-----------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc---
Q 048308 71 -YLHLTVTETLVFIA-LFRL-----------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS--- 127 (413)
Q Consensus 71 -~~~lTv~e~l~f~~-~~~~-----------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~--- 127 (413)
...+++.++....+ .++- ..||+++| +.+|++ |+|||+....++. ++.
T Consensus 138 ~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 138 ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence 11222223222111 1110 01677777 577776 9999999998884 221
Q ss_pred ---CCc-----EEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308 128 ---EGN-----SLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV 169 (413)
Q Consensus 128 ---~G~-----~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~ 169 (413)
+|. +|.. .+|+.. ...+|.+..+.+|+.
T Consensus 209 ~~~~GsiT~~~tVl~------------~thdl~--~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 209 PAPKGSITAIYTVLL------------ESDNVN--DPIGDEVRSILDGHI 244 (347)
T ss_dssp ECSSSEEEEEEEEEC------------CSSCCC--CHHHHHHHHHCSEEE
T ss_pred CCCCCCeeeEEEEEE------------eCCCCC--ChhhhheEEeeCcEE
Confidence 244 3332 245554 466999999888764
No 109
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.21 E-value=3.4e-12 Score=125.75 Aligned_cols=110 Identities=14% Similarity=0.024 Sum_probs=82.4
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hcc--ccEEEEecCCccCCCCCHHHH
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVK--RKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~--~~~~~v~q~~~~~~~lTv~e~ 79 (413)
.++|++++|+||||||||||++.|+|.++ +..|+|.++|.+... .+. ..+.+++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999876 356899999876531 112 236699999999999999999
Q ss_pred HHHHHHcCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 80 LVFIALFRLP-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 80 l~f~~~~~~~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
+.++...+.. .+--.+++++..++.++.|| +++|.|.....+
T Consensus 204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLD-a~t~~~~~~~~~ 262 (328)
T 3e70_C 204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGD-ALAGNAIVEQAR 262 (328)
T ss_dssp HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHHHH
T ss_pred HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEe-cHHHHHHHHHHH
Confidence 9887542211 02234788888888999999 455666655443
No 110
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.19 E-value=3.2e-11 Score=119.12 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=35.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 92 RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 92 rvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
|+.+|++|+.+|++++|||||+|||+..+..++ +..+|.++..
T Consensus 262 ~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~ 309 (339)
T 3qkt_A 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309 (339)
T ss_dssp HHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 678888899999999999999999999998873 2345666555
No 111
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.3e-12 Score=132.62 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=82.8
Q ss_pred cccceeEEecCcE--EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308 3 LKGIRGVSSLGEL--LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 3 L~~vs~~~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
|+|+|+.+++|++ ++|+||||||||||+|+|+|..- .|.-. .... ....++.++|++|+..+++.+||.||+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccchhhhh
Confidence 7899999999999 99999999999999999999842 12111 0000 112234689999987766555555443
Q ss_pred HHH------------------------HHc-CC-------c-------------------hhHHHHHHHHhhCCCEEEEe
Q 048308 81 VFI------------------------ALF-RL-------P-------------------IKRVSRAQELLINPSLLFLD 109 (413)
Q Consensus 81 ~f~------------------------~~~-~~-------~-------------------~krvsia~~l~~~p~llllD 109 (413)
.|. ... +. + ..-+.++++|..+++++++|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi 183 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPII 183 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEE
Confidence 221 011 10 0 02367888888899999999
Q ss_pred CCCCCCCHHHHHHHH------HhcCCcEEEecC
Q 048308 110 EPASGLDSTIAKQIL------LNSEGNSLHVGK 136 (413)
Q Consensus 110 EPtsgLD~~~~~~i~------ll~~G~~v~~G~ 136 (413)
||+..|.......+. +-.+|..||+=+
T Consensus 184 ~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 184 AKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred cchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 999999887765551 334676666544
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.14 E-value=2.2e-13 Score=135.96 Aligned_cols=117 Identities=16% Similarity=0.084 Sum_probs=72.7
Q ss_pred cccceeEEec--CcEEEEECCCCCCHHHHHHHHhCCCCCCCee----EEEEEC----CcccC---hhccccEEEEecCCc
Q 048308 3 LKGIRGVSSL--GELLAILGPSGRGKTTLPTTLGGRLSTGETR----GNIDYN----NNPLS---RTVKRKTGFVAHSNV 69 (413)
Q Consensus 3 L~~vs~~~~~--Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~----G~i~~~----g~~~~---~~~~~~~~~v~q~~~ 69 (413)
.+.|+..+++ |+.++|+||||||||||+|+|+|++++ .. |.+.++ |.+.. +.. +.+++++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4678999999 999999999999999999999999874 55 777663 33221 112 33666666533
Q ss_pred cCCCCCHHHHHHHH----------HHcCCchhHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHHH
Q 048308 70 FYLHLTVTETLVFI----------ALFRLPIKRVSRAQELL-INPSLLFLDE---PA------SGLDSTIAKQI 123 (413)
Q Consensus 70 ~~~~lTv~e~l~f~----------~~~~~~~krvsia~~l~-~~p~llllDE---Pt------sgLD~~~~~~i 123 (413)
.+ ..|+.||+.+. .......+|..+++.+. .+|++++||| |+ .++|...+..+
T Consensus 235 ~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 235 DY-AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HH-HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HH-HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 22 22333333210 00111124566666554 5999999999 65 58898877776
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.13 E-value=8.1e-12 Score=112.12 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=71.0
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh--ccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVFYLHLTVTETLVFIALF 86 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~ 86 (413)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.+.... .++.++|++|+.. ++.||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 46899999999999999999999999983 358899998764321 1234567777543 467888888664311
Q ss_pred -------------------------CCc--------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 87 -------------------------RLP--------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 87 -------------------------~~~--------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
..+ .+|+.++|++..+|+++ +|+.....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 000 16888888888888765 576655544
No 114
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.12 E-value=1.4e-11 Score=128.81 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=74.5
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE--EEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN--IDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA 84 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~--i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~ 84 (413)
+|.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++......... . . ..+++.+.....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~ee~~~~l~~~~----~--~--~g~~~~~~~~~g- 342 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKERAILFAYEESRAQLLRNA----Y--S--WGMDFEEMERQN- 342 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESSSCHHHHHHHH----H--T--TSCCHHHHHHTT-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHHHHH----H--H--cCCCHHHHHhCC-
Confidence 678999999999999999999999999997643 132 4444433211111100 0 0 122344422110
Q ss_pred HcC--------C---chhHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHH-----HhcCCcEEEe
Q 048308 85 LFR--------L---PIKRVSRAQELLINPSLLFLDEPASGLDST-----IAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 85 ~~~--------~---~~krvsia~~l~~~p~llllDEPtsgLD~~-----~~~~i~-----ll~~G~~v~~ 134 (413)
.+. + ..+|+.+|+++..+|+++++| ||+|||.. .+..+. +-..|.++..
T Consensus 343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 010 0 138999999999999999999 99999998 776652 2346766554
No 115
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.09 E-value=1e-10 Score=121.88 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEecC
Q 048308 91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQIL----LNSEGNSLHVGK 136 (413)
Q Consensus 91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~G~ 136 (413)
||+.||++|+.+| ++|+|||||+|||..++..+. -+.+|.+|..-+
T Consensus 404 qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~it 455 (517)
T 4ad8_A 404 SRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVT 455 (517)
T ss_dssp HHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7999999999999 999999999999999998883 123477666643
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.05 E-value=3.8e-11 Score=110.32 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=38.2
Q ss_pred cccccee-EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 2 ILKGIRG-VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 2 iL~~vs~-~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~ 60 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE 60 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc
Confidence 3677774 899999999999999999999999998654 233566655443
No 117
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.01 E-value=2e-10 Score=125.56 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308 91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i 123 (413)
||+.||++|..+| .+++|||||+|||+.....+
T Consensus 386 QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L 420 (842)
T 2vf7_A 386 QRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL 420 (842)
T ss_dssp HHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred HHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence 8999999999999 59999999999999988776
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.00 E-value=6.6e-10 Score=101.44 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=62.9
Q ss_pred cccce-eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-C-hhccccEEEEecCCccCCCCCHHHH
Q 048308 3 LKGIR-GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-S-RTVKRKTGFVAHSNVFYLHLTVTET 79 (413)
Q Consensus 3 L~~vs-~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-~-~~~~~~~~~v~q~~~~~~~lTv~e~ 79 (413)
|+++. |-+++|++++|.||||||||||++.+++ . ...+.+.++.... . ....+. .+.. .+...+.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~~----~~~~----~~~~~~~ 76 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQM----AETR----GLNPEEA 76 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHHH----HHTT----TCCHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHHH----HHhc----CCChHHH
Confidence 45554 5799999999999999999999999998 2 1234555655431 1 111110 0100 1111111
Q ss_pred HH---HHHHcCCc--hhHHHHHHHHhhC-CCEEEEeCCCCCCCHH
Q 048308 80 LV---FIALFRLP--IKRVSRAQELLIN-PSLLFLDEPASGLDST 118 (413)
Q Consensus 80 l~---f~~~~~~~--~krvsia~~l~~~-p~llllDEPtsgLD~~ 118 (413)
+. +....... .+++..+++++.+ |+++++||||+++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 10 00000111 2467788888875 9999999999999973
No 119
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.00 E-value=9.9e-11 Score=106.17 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=67.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC-C--CCeeEEEE------ECC-cccC---------------hh
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS-T--GETRGNID------YNN-NPLS---------------RT 56 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~-~--~~~~G~i~------~~g-~~~~---------------~~ 56 (413)
++++ +.+++|+.++|+|+||||||||+|.|+|... . .+..|.+. +++ ..+. +.
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 94 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRK 94 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHH
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHH
Confidence 4566 7889999999999999999999999999761 0 12334332 221 1000 00
Q ss_pred cc----------c---cEEEEecCCccCCCCCHH--HHHHHHHHcCCch---------------hH-HHHHHHHhhCCCE
Q 048308 57 VK----------R---KTGFVAHSNVFYLHLTVT--ETLVFIALFRLPI---------------KR-VSRAQELLINPSL 105 (413)
Q Consensus 57 ~~----------~---~~~~v~q~~~~~~~lTv~--e~l~f~~~~~~~~---------------kr-vsia~~l~~~p~l 105 (413)
++ + .+.++.. .-.+ .+-. +........+.|. +| +..+++++.+|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~d--~~~~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 95 WQRALGEYLEKRQSLQGLVVLMD--IRHP-LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEE--TTSC-CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhhhcccEEEEEEE--CCCC-CchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 01 1 1122222 1111 1221 2222223333321 34 7889999999999
Q ss_pred EEEeCCCCCCCHHHHHHHH
Q 048308 106 LFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 106 lllDEPtsgLD~~~~~~i~ 124 (413)
+++|||||++|.....++.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp CEEEEECBTTTTBSHHHHH
T ss_pred CCceEEEeecCCCCHHHHH
Confidence 9999999999998887773
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.98 E-value=1.5e-10 Score=100.99 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=25.5
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+|+.++|+||||+|||||++++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999764
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=1.1e-10 Score=104.18 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=56.5
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH--
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA-- 84 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~-- 84 (413)
++.+++|+.++|.||||+|||||++++++...+ .+|. .+.| +++.|.+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~~g~--------------~~~~----------~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE--KKGI--------------RGYF----------FDTKDLIFRLKHL 85 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH--HSCC--------------CCCE----------EEHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH--HcCC--------------eEEE----------EEHHHHHHHHHHH
Confidence 455678999999999999999999999987631 1120 0111 12333322111
Q ss_pred -HcCCchhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHH
Q 048308 85 -LFRLPIKRVSRAQELLINPSLLFLDEPAS-GLDSTIAKQIL 124 (413)
Q Consensus 85 -~~~~~~krvsia~~l~~~p~llllDEPts-gLD~~~~~~i~ 124 (413)
.-... + -....+.+|++|++|||++ ++|...+..+.
T Consensus 86 ~~~~~~-~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 86 MDEGKD-T---KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp HHHTCC-S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred hcCchH-H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 10110 1 2234466999999999986 99998887763
No 122
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.93 E-value=6.4e-10 Score=106.42 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=63.4
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH-H----
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV-F---- 82 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~-f---- 82 (413)
+-+++|++++|+||||||||||++.+++... .|.+. .|.+.. ....+.|+..++..- .+.+.+. +
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~--~~~~v~~~~~e~~~~---~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGEL--PTGPVIYLPAEDPPT---AIHHRLHALGAHL 94 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCC--CCCCEEEEESSSCHH---HHHHHHHHHHTTS
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccC--CCccEEEEECCCCHH---HHHHHHHHHHhhc
Confidence 4589999999999999999999999998543 23332 233221 123466666554320 1111111 0
Q ss_pred --------HHHcCC-----------chhHHHHHHHHhhCCCEEEEeCCCC--CCCHHH
Q 048308 83 --------IALFRL-----------PIKRVSRAQELLINPSLLFLDEPAS--GLDSTI 119 (413)
Q Consensus 83 --------~~~~~~-----------~~krvsia~~l~~~p~llllDEPts--gLD~~~ 119 (413)
...+.+ +..-+.++++++.+|+++++||||+ ++|...
T Consensus 95 ~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~ 152 (279)
T 1nlf_A 95 SAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENA 152 (279)
T ss_dssp CHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred ChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCc
Confidence 011110 1123566788999999999999999 999743
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.90 E-value=3.7e-10 Score=104.72 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=62.8
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCC--CCC---CCeeEEEEECCccc-C-h---hccccEEEEecC----CccCC
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR--LST---GETRGNIDYNNNPL-S-R---TVKRKTGFVAHS----NVFYL 72 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~--~~~---~~~~G~i~~~g~~~-~-~---~~~~~~~~v~q~----~~~~~ 72 (413)
.|-+++|++++|+||||||||||++.|++. .++ +...|.+++++... . + ...+.+++.+|+ -.+..
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 97 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYAR 97 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEe
Confidence 367999999999999999999999999993 321 02458888888762 1 1 112234444431 11112
Q ss_pred CCCHHHHHHHHHHcCCchhHHHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 048308 73 HLTVTETLVFIALFRLPIKRVSRAQELL--INPSLLFLDEPASGLDST 118 (413)
Q Consensus 73 ~lTv~e~l~f~~~~~~~~krvsia~~l~--~~p~llllDEPtsgLD~~ 118 (413)
..+..+.... +.-+.+++ .+|+++++|||++.+|..
T Consensus 98 ~~~~~~~~~~----------~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 98 AFNTDHQTQL----------LYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp CCSHHHHHHH----------HHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred cCCHHHHHHH----------HHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 2333332221 11122333 589999999999999975
No 124
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.89 E-value=6.7e-11 Score=107.15 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=46.7
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCHHHHH
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
|+.+++|++++|+||||||||||+++|+|..+ .+.+++.... ...++.++|++|+...++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999863 2444443322 12344678999987766666655543
No 125
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=5.4e-10 Score=108.57 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=47.8
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hc-cccEEEEecCCc------------
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TV-KRKTGFVAHSNV------------ 69 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~-~~~~~~v~q~~~------------ 69 (413)
.+.+|++++|+||||||||||+|+|+|+.. +.+|+|.+ +|+.... .. .+.+++|+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 346799999999999999999999999987 46799999 7876532 11 135789999864
Q ss_pred ----cCCCCCHHHHHHHH
Q 048308 70 ----FYLHLTVTETLVFI 83 (413)
Q Consensus 70 ----~~~~lTv~e~l~f~ 83 (413)
++|++|+ ||+.|.
T Consensus 243 ~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhccc-ccCcCC
Confidence 5777888 777664
No 126
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.82 E-value=5.6e-10 Score=115.00 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=45.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS 54 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 54 (413)
+|+|+|+++++ |+++|+||||||||||+++|+|.+++ .+|+|.++|.+..
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 68999999999 99999999999999999999999874 5799999998753
No 127
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.82 E-value=4.9e-09 Score=109.05 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=83.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCCccCCCCCHHHHH
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
+++++++.+++|+.++|+||||||||||+++|+|.+++ .+|.|.++|.. ......+.++++.|........|..+.+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 46788999999999999999999999999999999874 56999998864 2212234567777665533346766665
Q ss_pred HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcEEE----ecCcchHhHHHH
Q 048308 81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLH----VGKGDGVMSYFV 145 (413)
Q Consensus 81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~v~----~G~~~~~~~~f~ 145 (413)
. .+|-.+|+.++++|-+. -+ ....+.-+..|+.+. ..++.++..-+.
T Consensus 327 ~---------------~~LR~~PD~iivgEir~-~E--~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~ 377 (511)
T 2oap_1 327 R---------------AALRQRPDYIIVGEVRG-RE--AQTLFQAMSTGHASYSTLHAGDINQMVYRLE 377 (511)
T ss_dssp H---------------TTGGGCCSEEEESCCCS-TH--HHHHHHHHHTTCEEEEEEECSSHHHHHHHHH
T ss_pred H---------------HhhccCCCeEEeCCcCH-HH--HHHHHHhhcCCCCcccccccCCHHHHHHHHH
Confidence 4 14446899999999764 33 222333444576442 233444444443
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.81 E-value=5.2e-11 Score=109.08 Aligned_cols=45 Identities=29% Similarity=0.408 Sum_probs=37.9
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLS 54 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~ 54 (413)
.++|++++|+||||||||||+++|+|.+++ +...|.|..+|....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 578999999999999999999999998753 234788888887654
No 129
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.78 E-value=1.9e-10 Score=106.87 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=22.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHh-CCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG-GRLS 38 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~-g~~~ 38 (413)
..+++|+++++|++++|+||||||||||+++|+ |.++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467999999999999999999999999999999 9874
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.78 E-value=1.8e-09 Score=107.30 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=50.6
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC-CcccChhccccEEEEecCCccCCCCCHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-NNPLSRTVKRKTGFVAHSNVFYLHLTVTE 78 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~~~~~~~~~v~q~~~~~~~lTv~e 78 (413)
+++++.. .+|++++|+||||||||||+|+|+|... ....|+|..+ |........+.+++++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 3445543 4899999999999999999999999875 1356999886 65543344557899999988888888888
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=4.7e-09 Score=103.07 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=53.8
Q ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCC------C---HHHHHHHH
Q 048308 16 LAILGPSGRGKTTLPTTLGG-RLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHL------T---VTETLVFI 83 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~l------T---v~e~l~f~ 83 (413)
++|.||||+|||||++++++ ... +..|.+.++|.+... ..+..+++++|.+.+.-+. . +++.+.-.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV 116 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHH
Confidence 89999999999999999999 454 346888888865432 1234567777765432111 1 33333221
Q ss_pred HHc-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 84 ALF-RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 84 ~~~-~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
... .+. +.+.+ ..+..+|+++++|||++ ||..++..+.
T Consensus 117 ~~~~~~~-~~~~l-s~l~~~~~vlilDE~~~-L~~~~~~~L~ 155 (354)
T 1sxj_E 117 AQMEQVD-FQDSK-DGLAHRYKCVIINEANS-LTKDAQAALR 155 (354)
T ss_dssp TTTTC--------------CCEEEEEECTTS-SCHHHHHHHH
T ss_pred HHhcccc-ccccc-cccCCCCeEEEEeCccc-cCHHHHHHHH
Confidence 111 000 00000 11467999999999999 9999888774
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.76 E-value=8.5e-09 Score=99.91 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=67.4
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh-ccc---------cEEEEecCCccCCC
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-VKR---------KTGFVAHSNVFYLH 73 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~---------~~~~v~q~~~~~~~ 73 (413)
+++++. +|++++++|+||+||||++..|++.+.. ..|.|.+.+.+.... ... .+..++... .
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~----~ 162 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD----G 162 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT----T
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCC----C
Confidence 467777 8999999999999999999999998752 347787776654221 000 000010000 0
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHH
Q 048308 74 LTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEP-ASGLDSTIAKQI 123 (413)
Q Consensus 74 lTv~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEP-tsgLD~~~~~~i 123 (413)
....+ ..|..++.+...+++++++||| ++|+|......+
T Consensus 163 ~~p~~-----------l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 163 ESPES-----------IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp CCHHH-----------HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred CCHHH-----------HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 00111 0366777777789999999999 999998777665
No 133
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.75 E-value=3.4e-10 Score=111.82 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=57.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH 73 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~ 73 (413)
+|+++|+.+++|++++|+||||||||||+|+|+|.+.+ ..|+|.+.|.+... ..++.+++++|+...+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 57899999999999999999999999999999998752 46888888866532 134568899998877653
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.74 E-value=1.2e-09 Score=105.73 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH------
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA------ 84 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~------ 84 (413)
+++.+++|.|+||||||||.+.|++.+.+ .| . .++.+.+|+||+.+++. +.++++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 57899999999999999999999998752 11 0 13345566888887754 7777765531
Q ss_pred -------------------HcCCc----------------------hhHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 048308 85 -------------------LFRLP----------------------IKRVSRA--QELLINPSLLFLDEPASGLDSTI 119 (413)
Q Consensus 85 -------------------~~~~~----------------------~krvsia--~~l~~~p~llllDEPtsgLD~~~ 119 (413)
.++.. .+|+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11111 1355555 333 899999999999999753
No 135
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=1.7e-09 Score=105.42 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=43.4
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hccccEEEEecCCccCC----CCCHH
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TVKRKTGFVAHSNVFYL----HLTVT 77 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~~~~~~~v~q~~~~~~----~lTv~ 77 (413)
..+.+|++++|+||||||||||+|+|+|... ...|+|.+ +|+.... ..+...+|+.|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999876 36799988 7765432 12222789999987655 6889
Q ss_pred HHH
Q 048308 78 ETL 80 (413)
Q Consensus 78 e~l 80 (413)
|++
T Consensus 245 e~l 247 (307)
T 1t9h_A 245 EEL 247 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.68 E-value=6.8e-09 Score=100.89 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=48.1
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hcc-ccEEEEecCCccC-----CCCCHH
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TVK-RKTGFVAHSNVFY-----LHLTVT 77 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~~-~~~~~v~q~~~~~-----~~lTv~ 77 (413)
+.+|++++|+||||||||||+|+|+ ..+ ..+|+|.+ +|+.... ..+ +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3579999999999999999999999 766 46799998 8876542 122 2589999987543 78899
Q ss_pred HHH
Q 048308 78 ETL 80 (413)
Q Consensus 78 e~l 80 (413)
|++
T Consensus 238 e~l 240 (302)
T 2yv5_A 238 REV 240 (302)
T ss_dssp GGG
T ss_pred HHH
Confidence 777
No 137
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=5.1e-08 Score=87.47 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=64.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---------CeeEEEEECCcccC------hhccccEEEEecC----Cc--cCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLSTG---------ETRGNIDYNNNPLS------RTVKRKTGFVAHS----NV--FYLH 73 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~~---------~~~G~i~~~g~~~~------~~~~~~~~~v~q~----~~--~~~~ 73 (413)
.++|+|+||||||||++.++|...+. ..+|+|.++|.+.. ....+..++++|. +. +...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999975421 14789999886431 0111111122110 10 0001
Q ss_pred CC---HHHHHH-HH---HH-c--CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 74 LT---VTETLV-FI---AL-F--RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 74 lT---v~e~l~-f~---~~-~--~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.+ ..+++. +. .. . +.+ .++..+|++++.+|+++++| ||++|.....++.
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~ 183 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAF 183 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHH
Confidence 11 122221 11 11 1 111 13578999999999999999 9999998887763
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.59 E-value=3.9e-09 Score=95.83 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHH
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETL 80 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l 80 (413)
..++|++++|+||||||||||+++|++.+ |.+.++|..... ..+...++++|+....+.+++.|++
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 45789999999999999999999999875 778888876532 1122356777765444444444443
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.58 E-value=5.2e-09 Score=105.61 Aligned_cols=104 Identities=13% Similarity=0.229 Sum_probs=59.3
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHH--hCCCCC--C-CeeEEEEECCccc-Ch----hccccEEEEecCCccCCCCCH
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTL--GGRLST--G-ETRGNIDYNNNPL-SR----TVKRKTGFVAHSNVFYLHLTV 76 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l--~g~~~~--~-~~~G~i~~~g~~~-~~----~~~~~~~~v~q~~~~~~~lTv 76 (413)
.|-+++|++++|+||||||||||++.+ ++..++ + ...+.+++++... .. ...+.+++.+| ++
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~v 243 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DA 243 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hH
Confidence 367899999999999999999999954 555542 1 2346788888653 11 11223344333 22
Q ss_pred HHHHHHHHHcCCch--hHHHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 048308 77 TETLVFIALFRLPI--KRVSRAQELL--INPSLLFLDEPASGLDST 118 (413)
Q Consensus 77 ~e~l~f~~~~~~~~--krvsia~~l~--~~p~llllDEPtsgLD~~ 118 (413)
.|++.+........ +.+..+.+++ .+|+++++|||++.+|..
T Consensus 244 leni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 244 LNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred hhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 22221110000000 1122222322 479999999999999964
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.58 E-value=4.4e-09 Score=94.23 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=46.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHH
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFI 83 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~ 83 (413)
|++++|+||||||||||+++|++. ..|.+.++|.+..+. ...++++|.....+..|+++++.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDL 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHH
Confidence 789999999999999999999973 347888988654322 2345667665444556777777654
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.56 E-value=8.2e-08 Score=93.01 Aligned_cols=91 Identities=21% Similarity=0.332 Sum_probs=61.7
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHH-cCCc
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIAL-FRLP 89 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~-~~~~ 89 (413)
++|++++++|+|||||||+++.|++.+.+ .+| +.+.++.+|.. ..+..|.+...+. .+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~~~gl~ 163 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH--------------KKIAFITTDTY---RIAAVEQLKTYAELLQAP 163 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC--------------CCEEEEECCCS---STTHHHHHHHHHTTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC--------------CEEEEEecCcc---cchHHHHHHHHHHhcCCC
Confidence 57999999999999999999999997641 123 23555655542 3456676665432 2222
Q ss_pred ------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308 90 ------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122 (413)
Q Consensus 90 ------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~ 122 (413)
...+..+.+.+.+|+++++| |+|+|+.....
T Consensus 164 ~~~~~~~~~l~~al~~~~~~dlvIiD--T~G~~~~~~~~ 200 (296)
T 2px0_A 164 LEVCYTKEEFQQAKELFSEYDHVFVD--TAGRNFKDPQY 200 (296)
T ss_dssp CCBCSSHHHHHHHHHHGGGSSEEEEE--CCCCCTTSHHH
T ss_pred eEecCCHHHHHHHHHHhcCCCEEEEe--CCCCChhhHHH
Confidence 12344444456999999999 88999865543
No 142
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.55 E-value=1.2e-08 Score=112.39 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH
Q 048308 91 KRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 91 krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i 123 (413)
||+.||++|+.+|+ +++|||||+|||+.....+
T Consensus 471 QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l 505 (916)
T 3pih_A 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL 505 (916)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHH
T ss_pred HHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHH
Confidence 89999999999887 9999999999999998877
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.52 E-value=9.1e-09 Score=104.42 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh--------ccccEEEEe--------
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--------VKRKTGFVA-------- 65 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--------~~~~~~~v~-------- 65 (413)
+|+++ . .++|++++|+|||||||||||++|+|.+++ .+|+|.+.+.+.... ..+.+++.+
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~L 233 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAIL 233 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHh
Confidence 35555 3 389999999999999999999999998763 468999888775311 122344433
Q ss_pred -cCCcc--CCC----CCHHHHHHHHH
Q 048308 66 -HSNVF--YLH----LTVTETLVFIA 84 (413)
Q Consensus 66 -q~~~~--~~~----lTv~e~l~f~~ 84 (413)
|++.. ++. .|+++++.++.
T Consensus 234 rq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 234 RQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp GGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred ccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 66543 343 58888887653
No 144
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.51 E-value=7.4e-09 Score=109.86 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=80.8
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-------------
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN------------- 68 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~------------- 68 (413)
++++++..+++|+.++|+||||+|||||+++|++...+ ...|.+.+++.+.+.. ...++++++..
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~~-~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDEN-MPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCTT-SCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCccccc-CCcEEEEecchHHHHHHHHHHhhc
Confidence 46788889999999999999999999999999998864 3347888877765432 23466665432
Q ss_pred ---------ccCCCCCHHHHHH----------------------HHH---------HcCC-chhHHHHHHHHhhCCCEEE
Q 048308 69 ---------VFYLHLTVTETLV----------------------FIA---------LFRL-PIKRVSRAQELLINPSLLF 107 (413)
Q Consensus 69 ---------~~~~~lTv~e~l~----------------------f~~---------~~~~-~~krvsia~~l~~~p~lll 107 (413)
..+..+++.+|+. |.. .+.. ..+++..+.....++.+||
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~ 206 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLF 206 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEE
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCEEE
Confidence 1111111111110 100 0000 1244455666677999999
Q ss_pred EeCCCCCCCHHHHHHHH-HhcCCcE
Q 048308 108 LDEPASGLDSTIAKQIL-LNSEGNS 131 (413)
Q Consensus 108 lDEPtsgLD~~~~~~i~-ll~~G~~ 131 (413)
+||... |++..+..++ +|.+|++
T Consensus 207 LDEi~~-l~~~~q~~Ll~~Le~~~~ 230 (604)
T 3k1j_A 207 IDEIAT-LSLKMQQSLLTAMQEKKF 230 (604)
T ss_dssp ETTGGG-SCHHHHHHHHHHHHHSEE
T ss_pred Eechhh-CCHHHHHHHHHHHHcCcE
Confidence 999988 8988888774 4555543
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.50 E-value=5.6e-08 Score=94.65 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=58.1
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH-HHH
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV-FIA 84 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~-f~~ 84 (413)
+++..++|++++|+|+|||||||+++.|++.+.+ ..|.|.+.+.+.... + ..|.+. ++.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-----~-------------a~eqL~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-----A-------------AIEQLKIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-----H-------------HHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-----H-------------HHHHHHHHHH
Confidence 4555688999999999999999999999998752 246676655432110 0 011111 111
Q ss_pred HcCC---------chhHH---HHHHHHhhCCCEEEEeCCCC
Q 048308 85 LFRL---------PIKRV---SRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 85 ~~~~---------~~krv---sia~~l~~~p~llllDEPts 113 (413)
..++ ..+++ .+++++..+|+++++|||..
T Consensus 157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 157 RVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1111 12445 68888999999999999975
No 146
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=4.3e-08 Score=96.05 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=64.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc-----cccEEEE-ecCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV-----KRKTGFV-AHSN 68 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~-----~~~~~~v-~q~~ 68 (413)
++++++..++|++++++|+||+||||++..|++.+.. ..|.|.+.+.+... .+ +..+.++ .|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4789999999999999999999999999999998752 34777776654321 12 4468888 6654
Q ss_pred ccCCCCCHHHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCC
Q 048308 69 VFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPAS 113 (413)
Q Consensus 69 ~~~~~lTv~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPts 113 (413)
...|..++.+++. .++..+.+++++|-|=.
T Consensus 173 ~~~p~~~~~~~l~---------------~~~~~~yD~VIIDTpg~ 202 (320)
T 1zu4_A 173 NADPASVVFDAIK---------------KAKEQNYDLLLIDTAGR 202 (320)
T ss_dssp TCCHHHHHHHHHH---------------HHHHTTCSEEEEECCCC
T ss_pred CCCHHHHHHHHHH---------------HHHhcCCCEEEEcCCCc
Confidence 4433333333332 23456778999996543
No 147
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.47 E-value=3.1e-09 Score=99.17 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=40.0
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------------hhccccEEEEecC
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------------RTVKRKTGFVAHS 67 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------------~~~~~~~~~v~q~ 67 (413)
++.+++ ++++|+||||||||||+++|+|.+.+ .+|+|.++|.+.. ...+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999998864 5688988887651 1124568999985
No 148
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=1.6e-09 Score=109.07 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=76.6
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCC----------CCCeeEEEEECCcccCh-----hcccc---EEEEecCCc
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLS----------TGETRGNIDYNNNPLSR-----TVKRK---TGFVAHSNV 69 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~----------~~~~~G~i~~~g~~~~~-----~~~~~---~~~v~q~~~ 69 (413)
+.+++|+.++|+|+||||||||+|+|+|... ..+..|.+.++|...+. ..++. ..++.+..-
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 4678999999999999999999999999321 12578999998854321 11222 236667777
Q ss_pred cCCCCCHHHHH--HHHHHcCCch-----hHHHHHHHH-----hhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308 70 FYLHLTVTETL--VFIALFRLPI-----KRVSRAQEL-----LINP--SLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 70 ~~~~lTv~e~l--~f~~~~~~~~-----krvsia~~l-----~~~p--~llllDEPtsgLD~~~~~~i 123 (413)
+.+..+..|.+ .|.+.++... -+..=...+ -.+| ++.++|||+.++|.....+.
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~ 162 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKH 162 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHH
Confidence 77777877766 5554433211 000000111 1288 99999999999999887554
No 149
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.46 E-value=8e-08 Score=97.38 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=32.3
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++++++++|+.++|+|+||||||||+++|+|..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 6899999999999999999999999999999974
No 150
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.44 E-value=2.9e-07 Score=82.69 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=62.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CC----CeeEEEEECCcccC---------hhccccEEEEecC-Cc--cCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS-----TG----ETRGNIDYNNNPLS---------RTVKRKTGFVAHS-NV--FYLH 73 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~-----~~----~~~G~i~~~g~~~~---------~~~~~~~~~v~q~-~~--~~~~ 73 (413)
.++|+|+||||||||++.++|... +. ...|.|.++|.+.. +.+++......++ +. +...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 479999999999999999998742 11 13688999886431 1111111111111 10 0011
Q ss_pred CCH---HHHH-HHH---HHc---CCc-----------h---hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 74 LTV---TETL-VFI---ALF---RLP-----------I---KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 74 lTv---~e~l-~f~---~~~---~~~-----------~---krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
.+- .+++ .+. ... +.+ . +....|++++.+|++.++| ||++|.....++.
T Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 87 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAF 159 (199)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHH
Confidence 111 1221 111 110 111 1 2467899999999999999 9999988877763
No 151
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.35 E-value=1.5e-07 Score=84.88 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=26.8
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++++|++++|+|||||||||++++|++.+.
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999874
No 152
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.31 E-value=1.4e-08 Score=92.20 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=37.2
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE--EECCcccCh
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI--DYNNNPLSR 55 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~~~ 55 (413)
.+...++|++++|+|||||||||++++|++++. ..|.+ .++|....+
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRH 66 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTT
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhh
Confidence 344458999999999999999999999999874 33655 788766543
No 153
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.28 E-value=9.1e-07 Score=76.93 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308 94 SRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV 134 (413)
Q Consensus 94 sia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~ 134 (413)
++|++|+.+|++++|||||+|||+.++..+. +..+|+++..
T Consensus 73 alaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 118 (148)
T 1f2t_B 73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118 (148)
T ss_dssp HHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred HHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEE
Confidence 3458999999999999999999999998884 2234666554
No 154
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.27 E-value=3e-08 Score=97.44 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=57.5
Q ss_pred ccccceeEEecC-------cEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh----hccccEEEEecCC
Q 048308 2 ILKGIRGVSSLG-------ELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR----TVKRKTGFVAHSN 68 (413)
Q Consensus 2 iL~~vs~~~~~G-------e~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~----~~~~~~~~v~q~~ 68 (413)
++++++..+++| +.++|.||||+|||||+++|+|.+... ..+|.+..++.+... ..++.+.++.|.+
T Consensus 33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~ 112 (334)
T 1in4_A 33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112 (334)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGG
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchh
Confidence 456677777766 899999999999999999999976321 345655555544321 1245689999988
Q ss_pred ccCCCCCHHHHHHHHH
Q 048308 69 VFYLHLTVTETLVFIA 84 (413)
Q Consensus 69 ~~~~~lTv~e~l~f~~ 84 (413)
.+.+ ++.|++....
T Consensus 113 ~l~~--~~~e~L~~~~ 126 (334)
T 1in4_A 113 RLNK--AVEELLYSAI 126 (334)
T ss_dssp GCCH--HHHHHHHHHH
T ss_pred hcCH--HHHHHHHHHH
Confidence 7765 7888885443
No 155
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.26 E-value=8.3e-07 Score=97.75 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=43.4
Q ss_pred hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH------------------------------HHh------cCCcEE
Q 048308 91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI------------------------------LLN------SEGNSL 132 (413)
Q Consensus 91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i------------------------------~ll------~~G~~v 132 (413)
||+.||++|..+| ++++|||||+|||+.....+ +.| .+|+++
T Consensus 511 QRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv 590 (972)
T 2r6f_A 511 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVV 590 (972)
T ss_dssp HHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEE
T ss_pred HHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEE
Confidence 8999999999985 99999999999999888776 244 578888
Q ss_pred EecCcchHh
Q 048308 133 HVGKGDGVM 141 (413)
Q Consensus 133 ~~G~~~~~~ 141 (413)
+.|++++..
T Consensus 591 ~~G~~~e~~ 599 (972)
T 2r6f_A 591 AAGTPEEVM 599 (972)
T ss_dssp EEECTTTTT
T ss_pred EecCHHHHH
Confidence 888877653
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.26 E-value=2.2e-07 Score=82.79 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=30.8
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 50 (413)
.+|++++|+||||||||||++.|++..++ ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 37999999999999999999999997642 2456555433
No 157
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=4.7e-07 Score=81.87 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=24.9
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|||+.+++|++++|+|+|||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999999999999999765
No 158
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.21 E-value=3.8e-07 Score=82.71 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=23.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|++++|+||||||||||+|+|+|.++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6899999999999999999999999753
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.21 E-value=1.7e-08 Score=93.48 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=27.6
Q ss_pred cccc-eeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 3 LKGI-RGVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 3 L~~v-s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
|+++ .|-+++|++++|.||||||||||+..++.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4555 77899999999999999999999665543
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.20 E-value=3.9e-07 Score=87.14 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=40.0
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
+++++++.+++| ++|.||||||||||+|+|+|.... |.|.++|.+.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l 80 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPEL 80 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHH
Confidence 578899999999 999999999999999999998752 7888888654
No 161
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.19 E-value=7.3e-08 Score=85.95 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=56.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccC-------hhcc-ccEE----EEecCCccCC-CCCHHH-
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLS-------RTVK-RKTG----FVAHSNVFYL-HLTVTE- 78 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~-------~~~~-~~~~----~v~q~~~~~~-~lTv~e- 78 (413)
++++|+|+||||||||++.|+|.+++. ...|.|.++|.+.. +.++ +.++ ++.|+..++- .-.-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 589999999999999999999987642 23799999997631 1233 3455 7888766541 100110
Q ss_pred -HH-HHHHH-c-CC-----------chhHHHHHHHHhhCCCE
Q 048308 79 -TL-VFIAL-F-RL-----------PIKRVSRAQELLINPSL 105 (413)
Q Consensus 79 -~l-~f~~~-~-~~-----------~~krvsia~~l~~~p~l 105 (413)
.+ .+... + +. ++||++|||+++.+|++
T Consensus 83 a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 83 NDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp TCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred hCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 11 12222 2 11 23899999999999887
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.17 E-value=6.4e-07 Score=88.71 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=55.9
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-ChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-SRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF 86 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~ 86 (413)
|-+++|+++.|.||||||||||+..++..... .....++++.... .+...+..++..++-.+....++.+.+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l------ 128 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL------ 128 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH------
Confidence 57899999999999999999998888754321 0112233433321 111112223222322222233554433
Q ss_pred CCchhHHHHHHHHhh--CCCEEEEeCCCCCC
Q 048308 87 RLPIKRVSRAQELLI--NPSLLFLDEPASGL 115 (413)
Q Consensus 87 ~~~~krvsia~~l~~--~p~llllDEPtsgL 115 (413)
.++++++. +|+++++||+++.+
T Consensus 129 -------~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 129 -------EIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp -------HHHHHHHTTTCCSEEEEECGGGCC
T ss_pred -------HHHHHHHhcCCCCEEEEcChHhhc
Confidence 35666664 49999999999988
No 163
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.15 E-value=7.8e-07 Score=78.82 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=31.2
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6889999999 999999999999999999988664
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.13 E-value=6.2e-07 Score=80.26 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=24.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|++++|+||||||||||+|+|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999875
No 165
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.11 E-value=2.8e-07 Score=86.83 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=48.9
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEEEE--------ECCcccCh-----hccccEEEEecCC-----c
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLG---GRLSTGETRGNID--------YNNNPLSR-----TVKRKTGFVAHSN-----V 69 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~-----~~~~~~~~v~q~~-----~ 69 (413)
++|++++|+|||||||||++++|+ |... ..+|.+. .+|.+... ..++.+++++|++ .
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQV 102 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceE
Confidence 789999999999999999999999 7654 3568887 77766521 3445677877643 3
Q ss_pred cCCCCCHHHHH
Q 048308 70 FYLHLTVTETL 80 (413)
Q Consensus 70 ~~~~lTv~e~l 80 (413)
.....++.+++
T Consensus 103 ~l~~~~v~~~i 113 (252)
T 4e22_A 103 ILEGEDVSNEI 113 (252)
T ss_dssp EETTEECTTGG
T ss_pred EECCeehhHHH
Confidence 34455565554
No 166
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.10 E-value=5.7e-08 Score=94.91 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=33.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC------CCeeEEEEECCccc
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLST------GETRGNIDYNNNPL 53 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~ 53 (413)
=++++|+|+||||||||+|.|.|..+. ....|+|.++|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 368999999999999999999998621 13568888888765
No 167
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.10 E-value=1.2e-06 Score=79.90 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=26.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999875
No 168
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.08 E-value=1.2e-06 Score=96.76 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=31.0
Q ss_pred hHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHH
Q 048308 91 KRVSRAQELLIN--PSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 91 krvsia~~l~~~--p~llllDEPtsgLD~~~~~~i 123 (413)
||+.||++|..+ |++++|||||+|||+.....+
T Consensus 528 QRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L 562 (993)
T 2ygr_A 528 QRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRL 562 (993)
T ss_dssp HHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHH
Confidence 899999999999 489999999999999998877
No 169
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.06 E-value=5.8e-07 Score=83.34 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=35.4
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
+-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34455689999999999999999999999987 26677777654
No 170
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.02 E-value=5.9e-07 Score=84.89 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=34.2
Q ss_pred ccccceeEEec---CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 2 ILKGIRGVSSL---GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 2 iL~~vs~~~~~---Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+|+|+|+.+++ |+.++|+|+|||||||+.++|++.+
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999 9999999999999999999999865
No 171
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.98 E-value=4.6e-06 Score=75.49 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=27.3
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+++|++++|+|+|||||||+.+.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 468899999999999999999999999763
No 172
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.97 E-value=1.3e-06 Score=81.72 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=38.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|.+
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~ 84 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSD 84 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHH
Confidence 467888999999 99999999999999999999764 4777777654
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.95 E-value=1.6e-06 Score=86.70 Aligned_cols=42 Identities=26% Similarity=0.170 Sum_probs=36.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY 48 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 48 (413)
+++++|+.+++|++++|.||||||||||+++|+|.. .|.+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~ 199 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALN 199 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEEC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEE
Confidence 578889999999999999999999999999999854 355544
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.94 E-value=1.6e-06 Score=82.54 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=38.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.+
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~ 108 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSD 108 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHH
Confidence 467889999999 99999999999999999999764 4778877754
No 175
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.94 E-value=2.4e-06 Score=75.14 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=31.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
.+|++++|+|+|||||||+++.|++++ |.+.+++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 579999999999999999999999864 5667777654
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.89 E-value=2.4e-06 Score=89.47 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=37.7
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
++++++.+ +|+.++|+||||+|||||+++|++... ...|.|..+|..
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 45666777 899999999999999999999999875 456778777643
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.85 E-value=6.9e-06 Score=84.56 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=49.3
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
++++++.+++| +.|.||||+|||||++++++.... + -+.+++...... + +.+
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-~---f~~is~~~~~~~--------------~----~g~---- 92 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-P---FFHISGSDFVEL--------------F----VGV---- 92 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-C---EEEEEGGGTTTC--------------C----TTH----
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-C---eeeCCHHHHHHH--------------H----hcc----
Confidence 34556666666 889999999999999999986431 1 122333221110 0 011
Q ss_pred HHHcCCchhHHHHHHHHhhCCCEEEEeCCC
Q 048308 83 IALFRLPIKRVSRAQELLINPSLLFLDEPA 112 (413)
Q Consensus 83 ~~~~~~~~krvsia~~l~~~p~llllDEPt 112 (413)
.. ...|..++++....|.++|+||+.
T Consensus 93 ~~----~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 93 GA----ARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp HH----HHHHHHHHHHHHTCSEEEEEETGG
T ss_pred cH----HHHHHHHHHHHhcCCCEEEEechh
Confidence 00 124556777777899999999993
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.85 E-value=4.8e-06 Score=82.56 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=61.2
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE-EEECCcccC-hhccccEEEEecCCccCCCCCHHHHHHHHHH
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN-IDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETLVFIAL 85 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~-i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~ 85 (413)
|-+++|+++.|.||||||||||+..++..... ..|. +++++.... ....+.+++.+|+..+....++.+.+..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~--- 130 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI--- 130 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH---
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH---
Confidence 46899999999999999999999999876431 2243 456655432 2233345555555544455577665543
Q ss_pred cCCchhHHHHHHHHh--hCCCEEEEeCCCCCC
Q 048308 86 FRLPIKRVSRAQELL--INPSLLFLDEPASGL 115 (413)
Q Consensus 86 ~~~~~krvsia~~l~--~~p~llllDEPtsgL 115 (413)
++.++ .+|+++++|+-++=.
T Consensus 131 ----------~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 131 ----------VDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp ----------HHHHHHTSCCSEEEEECTTTCC
T ss_pred ----------HHHHhhhcCCCeEEehHhhhhc
Confidence 22333 578999999866544
No 179
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.78 E-value=7.2e-06 Score=71.67 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=24.6
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.|++++|+|+|||||||++++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999999764
No 180
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=3.7e-06 Score=76.16 Aligned_cols=41 Identities=27% Similarity=0.172 Sum_probs=32.2
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN 51 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 51 (413)
..++|++++|+|+||||||||++.|++.+++ ..|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999997642 2356655443
No 181
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.78 E-value=3.7e-05 Score=68.48 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHH
Q 048308 90 IKRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 90 ~krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i~ 124 (413)
++|++||++++. +|++++|||||+|||+.+...+.
T Consensus 70 kqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~ 108 (173)
T 3kta_B 70 KALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA 108 (173)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH
Confidence 489999999974 46999999999999999998884
No 182
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.75 E-value=9.8e-06 Score=73.75 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.4
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
...+|++++|+||||||||||++.|.+..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999998764
No 183
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.75 E-value=3.5e-06 Score=82.43 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=29.4
Q ss_pred cccceeEEecCc------EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 3 LKGIRGVSSLGE------LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 3 L~~vs~~~~~Ge------~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|++++..+..++ +++|.||||||||||+++|++++.
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555565555 999999999999999999999865
No 184
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.71 E-value=2.1e-05 Score=68.12 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.9
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
++.+..+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455566665 99999999999999999986
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.68 E-value=8.5e-06 Score=87.32 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=63.8
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHHHHHH
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+.+++|+.++|+|++|+|||||++.|.+........|+| .+|....+ ..++.+++..|...+... +++.|+.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEe
Confidence 4567899999999999999999999999754322345666 45544321 123334444443222211 11111100
Q ss_pred HHHcCCch-hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHh
Q 048308 83 IALFRLPI-KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLN 126 (413)
Q Consensus 83 ~~~~~~~~-krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll 126 (413)
-.+... ........-..+..++++| |+.|+|..+...+-.+
T Consensus 81 --TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~ 122 (665)
T 2dy1_A 81 --APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVA 122 (665)
T ss_dssp --CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHH
T ss_pred --CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHH
Confidence 000001 1112222335788889999 9999999888666433
No 186
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.63 E-value=6.5e-06 Score=86.24 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=35.5
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEE-ECCccc
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NID-YNNNPL 53 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~~ 53 (413)
.+++|++++|+|+||||||||+++|++++.+ ..| .+. ++|...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcHH
Confidence 4679999999999999999999999998753 344 674 888654
No 187
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.55 E-value=3.1e-05 Score=78.43 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.5
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
..+.+|++++|+||||||||||+++|++...
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4466799999999999999999999998764
No 188
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.53 E-value=1.2e-05 Score=82.08 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=63.0
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcccCh--hcccc----EEEEecCCccCCCCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNPLSR--TVKRK----TGFVAHSNVFYLHLT 75 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~--~~~~~----~~~v~q~~~~~~~lT 75 (413)
|+++.+-+++|+++.|.|+||+|||||+..+++.... ..| .+.+.+.+.+. ..++. .++..+ ......++
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~-~l~~g~l~ 269 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGNINAQ-NLRTGKLT 269 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHTCCHH-HHHTSCCC
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH-HHhcCCCC
Confidence 6677778999999999999999999999999876431 123 45444433321 11111 111111 11112344
Q ss_pred HHHHHHHHH---Hc---C--------C-chhHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 048308 76 VTETLVFIA---LF---R--------L-PIKRVSRAQELL--INPSLLFLDEPASGLD 116 (413)
Q Consensus 76 v~e~l~f~~---~~---~--------~-~~krvsia~~l~--~~p~llllDEPtsgLD 116 (413)
..|--.+.. .+ . + ..+..+.++.+. .+|+++++|+++...+
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 333211110 00 0 0 013446677776 5799999999998774
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.48 E-value=3.1e-05 Score=71.87 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=27.1
Q ss_pred cccceeEEe---cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 3 LKGIRGVSS---LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 3 L~~vs~~~~---~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|+++|+++. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567777776 999999999999999999999998875
No 190
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.42 E-value=0.00015 Score=63.31 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|..++|+|+||+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.39 E-value=0.00028 Score=67.09 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=47.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCch
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI 90 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~ 90 (413)
.++.-+.|.||+|+|||||++++++.... --+.+++....... .. ...+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~----~~~~i~~~~l~~~~-------------~~--~~~~~----------- 101 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSA----TFLNISAASLTSKY-------------VG--DGEKL----------- 101 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTC----EEEEEESTTTSSSS-------------CS--CHHHH-----------
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC----CeEEeeHHHHhhcc-------------cc--hHHHH-----------
Confidence 46789999999999999999999986531 12233332111000 00 11111
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 91 KRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 91 krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
.|..++.+...+|.++++||+.+-++.
T Consensus 102 ~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 102 VRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 233344555678999999999876553
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.36 E-value=8.3e-05 Score=65.50 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=30.8
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE--EEEECCccc
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG--NIDYNNNPL 53 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G--~i~~~g~~~ 53 (413)
++|++++|+|++||||||+.+.|++.+.+ .| .+.+++...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChHH
Confidence 57999999999999999999999987631 23 556665543
No 193
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.36 E-value=0.00014 Score=73.77 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC------C----CCeeEEEEECCccc
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS------T----GETRGNIDYNNNPL 53 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~------~----~~~~G~i~~~g~~~ 53 (413)
-++|+|+||+|||||+|.|+|... + ....|.+.++|.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 789999999999999999999743 1 13458888888643
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.34 E-value=4e-05 Score=75.32 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.7
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++++++..++|.+++|+|+||+|||||++.|++.+
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467888889999999999999999999999998765
No 195
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.33 E-value=0.00012 Score=66.51 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.3
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
++.+..+.+| +++|.|||||||||++++|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445555654 99999999999999999884
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.33 E-value=9.4e-05 Score=67.40 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=37.9
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEE--------CCcccCh-----hccccEEEEecC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDY--------NNNPLSR-----TVKRKTGFVAHS 67 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~--------~g~~~~~-----~~~~~~~~v~q~ 67 (413)
.+.+++|+|||||||||+.+.|++.+... ...|++.. +|.+... ...+.+++++|+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 35789999999999999999999865311 23466655 4554321 234456777664
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.32 E-value=0.0004 Score=66.73 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=31.5
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN 51 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 51 (413)
.++++..+.|.||+|+|||||.++|++... .+.+.+++.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~ 83 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGP 83 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhH
Confidence 467899999999999999999999998753 245556553
No 198
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.32 E-value=6.8e-05 Score=77.55 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=38.6
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
+++++++.+++| ++|.||||+|||||+++|++... .+.+.+++...
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~ 100 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF 100 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGG
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHH
Confidence 467888999999 99999999999999999999764 46777777543
No 199
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.0001 Score=65.45 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.7
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999876
No 200
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.30 E-value=0.0001 Score=66.58 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.9
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999988763
No 201
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.28 E-value=0.00023 Score=63.15 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=27.2
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC----C--CCeeEEEEECC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS----T--GETRGNIDYNN 50 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~----~--~~~~G~i~~~g 50 (413)
+++++++..++. -++++|++|+|||||++.+.+... + +...+.+.++|
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 578899988887 668999999999999999987421 1 23456666665
No 202
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00034 Score=68.61 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=24.0
Q ss_pred cCc--EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGE--LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge--~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+|. .+.|.||+|+|||||++.+++...
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999998764
No 203
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.22 E-value=0.00016 Score=65.07 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q 048308 15 LLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g 35 (413)
+++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.21 E-value=0.00017 Score=78.98 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=32.3
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN 51 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 51 (413)
+.+++|+-++|.||||+|||||+++|++.... -.+.+++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~----~~i~v~~~ 272 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGP 272 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC----EEEEEEHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC----cEEEEEch
Confidence 45789999999999999999999999998742 23555553
No 205
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.19 E-value=6.4e-05 Score=68.26 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=33.9
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE--EEEECCcc
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG--NIDYNNNP 52 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G--~i~~~g~~ 52 (413)
.+++|.+++|.|++||||||+.+.|++.+.+ ..| .+.+++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECChH
Confidence 3578999999999999999999999987641 345 67777654
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.19 E-value=0.00042 Score=68.08 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=58.8
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+.+.+-++||+++.|.|+||+|||||+.-++..... . ...+.|+.- .++..+...=
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~--------------g~~Vl~fSl------Ems~~ql~~R 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---D--------------DRGVAVFSL------EMSAEQLALR 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---T--------------TCEEEEEES------SSCHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---c--------------CCeEEEEeC------CCCHHHHHHH
Confidence 4556667899999999999999999998888754320 0 112333332 2333332211
Q ss_pred --HHHc----------CCc---hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 83 --IALF----------RLP---IKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 83 --~~~~----------~~~---~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
+... ++. .+|+..|...+.++++++.|+|...+|.
T Consensus 93 lls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~ 142 (338)
T 4a1f_A 93 ALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQ 142 (338)
T ss_dssp HHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHH
T ss_pred HHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHH
Confidence 1111 111 2688888889999999999999766553
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.19 E-value=0.00024 Score=72.16 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.5
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++.+++++|++||||||++..|++.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999997764
No 208
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.17 E-value=0.00011 Score=65.70 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=29.1
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 4677888888875 689999999999999999874
No 209
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.12 E-value=0.00034 Score=69.38 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHH
Q 048308 94 SRAQELLIN-PSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 94 sia~~l~~~-p~llllDEPtsgLD~~~~~~i~ 124 (413)
++|++|+.+ |++++|||||+|||...+..+.
T Consensus 296 a~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~ 327 (371)
T 3auy_A 296 AIANALIGNRVECIILDEPTVYLDENRRAKLA 327 (371)
T ss_dssp HHHHHHHSSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHH
Confidence 567888999 9999999999999999998884
No 210
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.12 E-value=0.0002 Score=70.69 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=28.8
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 50 (413)
+++..++|+|+||||||||+|.|+|...+ ..|.|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEe
Confidence 45889999999999999999999986532 234454443
No 211
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.09 E-value=7.9e-05 Score=73.64 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.3
Q ss_pred ccccceeEEecCcE--EEEECCCCCCHHHHHHHHhCCC
Q 048308 2 ILKGIRGVSSLGEL--LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 2 iL~~vs~~~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++++++..+++|+. ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56788888999999 9999999999999999998864
No 212
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.08 E-value=0.0013 Score=62.04 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.2
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++++.-+.|.||+|+|||||++++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35677899999999999999999998753
No 213
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.07 E-value=0.00056 Score=66.34 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=56.6
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF 82 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f 82 (413)
|+++.+-+++|+++.|.|+||+|||||+..++..... .| ..+.|+.-+ ++..+...=
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g--------------~~vl~~slE------~s~~~l~~R 114 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND--------------DVVNLHSLE------MGKKENIKR 114 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT--------------CEEEEEESS------SCHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC--------------CeEEEEECC------CCHHHHHHH
Confidence 4556677899999999999999999998877643210 01 123333322 222222111
Q ss_pred H--HH--------------c-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308 83 I--AL--------------F-RLPIKRVSRAQELLINPSLLFLDEPASGLDS 117 (413)
Q Consensus 83 ~--~~--------------~-~~~~krvsia~~l~~~p~llllDEPtsgLD~ 117 (413)
. .. + .-..+|+..|...+.++++++.|+|...+|.
T Consensus 115 ~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~ 166 (315)
T 3bh0_A 115 LIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNY 166 (315)
T ss_dssp HHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH
T ss_pred HHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 0 00 1 1122577888888889999999999755443
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.05 E-value=0.00022 Score=63.97 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q 048308 15 LLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g 35 (413)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 215
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.05 E-value=0.00033 Score=71.18 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.-+.|.||+|+|||||+++|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998754
No 216
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.03 E-value=0.00029 Score=62.32 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=26.7
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
..++|.+++|+|++||||||+.+.|++.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999998764
No 217
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.02 E-value=0.00025 Score=68.33 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.0
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..++|+|+||+|||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999863
No 218
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.01 E-value=0.00051 Score=68.17 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=29.9
Q ss_pred cCcE-EEEECCCCCCHHHHHHHHhCCCCC---------CCeeEEEEECCcc
Q 048308 12 LGEL-LAILGPSGRGKTTLPTTLGGRLST---------GETRGNIDYNNNP 52 (413)
Q Consensus 12 ~Ge~-~~ilG~sGsGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~ 52 (413)
+|-. ++|+|+||||||||+|.|+|.... +...|.+.++|.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 3444 999999999999999999997531 1356888888754
No 219
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.00 E-value=0.00033 Score=61.62 Aligned_cols=27 Identities=37% Similarity=0.681 Sum_probs=23.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.99 E-value=0.0003 Score=61.47 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=24.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.|.++.|.|+|||||||+.+.|+.++.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.99 E-value=0.0016 Score=63.26 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=26.5
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
|-+++|+++.|.||+|+|||||+..++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 67899999999999999999999988764
No 222
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.99 E-value=0.00062 Score=59.53 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 223
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00028 Score=62.74 Aligned_cols=39 Identities=38% Similarity=0.340 Sum_probs=29.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCc
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNN 51 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~ 51 (413)
-.+++|+|+||||||||++.|.+.+.. +...|.|..+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 358999999999999999999886432 233467766543
No 224
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.97 E-value=0.00044 Score=59.69 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|+||+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 225
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.96 E-value=0.00034 Score=68.97 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=25.4
Q ss_pred ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+|++++..++ .++|+|++|||||||+|.|+|.
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 4667777777 8999999999999999999995
No 226
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.96 E-value=0.002 Score=59.22 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
-++|+|++|+|||||+|.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999754
No 227
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00032 Score=62.94 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 228
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.0002 Score=67.05 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.8
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 53 (413)
..+++.++.|+|+|||||||+.+.|+..+.. +.+.+++...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHHH
Confidence 5677899999999999999999999987641 4466676543
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.90 E-value=0.00049 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++|.|++||||||+.+.|+.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 230
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.00013 Score=71.08 Aligned_cols=37 Identities=30% Similarity=0.544 Sum_probs=31.5
Q ss_pred ccccceeEEecCcE--EEEECCCCCCHHHHHHHHhCCCC
Q 048308 2 ILKGIRGVSSLGEL--LAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 2 iL~~vs~~~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++.++..++.|++ +.+.||||+||||+++++++.+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35566677788988 99999999999999999998754
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.00035 Score=65.11 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=23.5
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++++..++| ++|.||||+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 344444444 88999999999999999998653
No 232
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.86 E-value=0.00073 Score=68.23 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=31.6
Q ss_pred hHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308 91 KRVSRAQELL----INPSLLFLDEPASGLDSTIAKQIL 124 (413)
Q Consensus 91 krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i~ 124 (413)
+|++||++|+ .+|++++|||||++||+..+..+.
T Consensus 340 ~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~ 377 (430)
T 1w1w_A 340 TVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA 377 (430)
T ss_dssp HHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH
Confidence 7999999999 579999999999999999999884
No 233
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.86 E-value=0.00046 Score=68.39 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=25.3
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
++....+.|| +++|.|+|||||||++.+|.
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556666665 99999999999999999985
No 234
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.85 E-value=0.00059 Score=68.42 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=33.2
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC---------CCCeeEEEEECCc
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS---------TGETRGNIDYNNN 51 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~---------~~~~~G~i~~~g~ 51 (413)
.+-+.++.|..++|+|+||+|||||+|+|+|... ..+..|.+.+++.
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3556778899999999999999999999998621 1134566666553
No 235
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.0014 Score=64.49 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..-.++++|+||+|||||++.|+|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999864
No 236
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.79 E-value=0.00061 Score=59.85 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999853
No 237
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.78 E-value=0.00072 Score=59.38 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.7
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.77 E-value=0.00019 Score=71.13 Aligned_cols=29 Identities=34% Similarity=0.301 Sum_probs=23.7
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++++++.+ +|+|+||+|||||+|.|.+..
T Consensus 33 ~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 33 KKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred cCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45555554 999999999999999998764
No 239
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.77 E-value=0.00063 Score=62.75 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.9
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999999999754
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.75 E-value=0.00065 Score=59.93 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.0
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 241
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.71 E-value=0.00081 Score=62.61 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999654
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.69 E-value=0.00037 Score=70.62 Aligned_cols=45 Identities=18% Similarity=0.003 Sum_probs=35.5
Q ss_pred ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308 4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP 52 (413)
Q Consensus 4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 52 (413)
+++++. +|++++++|++||||||++..|++.+.. ..|.|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeecc
Confidence 356776 8999999999999999999999998753 24666665543
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.69 E-value=0.00093 Score=58.72 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.7
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 244
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.68 E-value=0.00056 Score=68.30 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.6
Q ss_pred cceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 788999999999999999999999999998754
No 245
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.67 E-value=1.6e-05 Score=86.64 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHH----H-hcCCcEEEec
Q 048308 91 KRVSRAQELLINPSLLFLDEPAS-GLDSTIAKQIL----L-NSEGNSLHVG 135 (413)
Q Consensus 91 krvsia~~l~~~p~llllDEPts-gLD~~~~~~i~----l-l~~G~~v~~G 135 (413)
.|..++..++.+++++++|||.. +||......++ - ..+.+++...
T Consensus 197 ~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~S 247 (773)
T 2xau_A 197 LREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMS 247 (773)
T ss_dssp HHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 34555667789999999999995 99976554442 1 2356666664
No 246
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.67 E-value=0.00094 Score=59.51 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.7
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 247
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.67 E-value=0.00075 Score=63.27 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999997653
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.65 E-value=0.00094 Score=57.35 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 048308 15 LLAILGPSGRGKTTLPTTL 33 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l 33 (413)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.58 E-value=0.0012 Score=58.91 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999988654
No 250
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.58 E-value=0.001 Score=58.29 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..+..+.|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998554
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.55 E-value=0.0013 Score=57.20 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g 35 (413)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.55 E-value=0.00027 Score=68.15 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=32.9
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN 51 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 51 (413)
+++..+ |++++++|++|+||||++..|++.+.. ..+.+.+.+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~ 134 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGA 134 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEec
Confidence 666665 999999999999999999999987642 2345555443
No 253
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.53 E-value=0.00054 Score=60.77 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=26.6
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.....+++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 5 FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33445678899999999999999999998754
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.52 E-value=0.0013 Score=58.31 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
No 255
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.50 E-value=0.0013 Score=58.12 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.1
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 256
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.50 E-value=0.0014 Score=58.80 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.7
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998654
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.47 E-value=0.0014 Score=58.89 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999976543
No 258
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0013 Score=62.83 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=28.1
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN 50 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 50 (413)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4578999999999999999999987653 13455554
No 259
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.43 E-value=0.0015 Score=57.01 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|+|||||||+.+.|+.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999765
No 260
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0017 Score=58.75 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.9
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.41 E-value=0.0016 Score=58.36 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.4
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998654
No 262
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0019 Score=56.76 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
No 263
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.36 E-value=0.0063 Score=58.97 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.7
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+|..-+.|.||+|+|||+|.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999865
No 264
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.35 E-value=0.0017 Score=57.00 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 265
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.35 E-value=0.0021 Score=58.37 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.6
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|-.++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998754
No 266
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.33 E-value=0.0016 Score=61.31 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.31 E-value=0.0018 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999875
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.27 E-value=0.00093 Score=60.02 Aligned_cols=24 Identities=46% Similarity=0.670 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 269
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.22 E-value=0.0025 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999998864
No 270
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0026 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 271
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.20 E-value=0.012 Score=57.75 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.9
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..-+.|.||+|+|||||.++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999765
No 272
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.19 E-value=0.0018 Score=56.57 Aligned_cols=27 Identities=41% Similarity=0.505 Sum_probs=19.2
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987653
No 273
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.19 E-value=0.0021 Score=54.64 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998764
No 274
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0022 Score=56.25 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998864
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.16 E-value=0.0022 Score=54.42 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999999875
No 276
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.15 E-value=0.0029 Score=53.93 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998753
No 277
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.14 E-value=0.0021 Score=62.97 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=26.6
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
|-+++|+++.|.||+|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999988764
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.11 E-value=0.0026 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998764
No 279
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.11 E-value=0.0028 Score=57.88 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.7
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 280
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.11 E-value=0.0027 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.10 E-value=0.0034 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.2
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..+-+++|.|++||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998654
No 282
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.09 E-value=0.0026 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999764
No 283
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0032 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++|.|++||||||+.+.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998765
No 284
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.06 E-value=0.0027 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 285
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.05 E-value=0.0029 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+++|+|++|||||||++.|.+.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999998764
No 286
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.05 E-value=0.0028 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.05 E-value=0.0036 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
=++++|.|++||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 288
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.03 E-value=0.0032 Score=59.78 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|+|||||+|.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 289
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.03 E-value=0.0024 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
No 290
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.02 E-value=0.0033 Score=58.48 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 291
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.02 E-value=0.0029 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 292
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.01 E-value=0.003 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998653
No 293
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.01 E-value=0.0038 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.5
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 294
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.01 E-value=0.0043 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.0
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999875
No 295
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.00 E-value=0.0031 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 296
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.00 E-value=0.0036 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 297
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.98 E-value=0.003 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 298
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.98 E-value=0.0038 Score=54.83 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998754
No 299
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.98 E-value=0.0031 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 300
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.96 E-value=0.0057 Score=59.94 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=24.4
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++.+++|+||+|||||||...|+.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567999999999999999999998764
No 301
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.96 E-value=0.0029 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
=-++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999876
No 302
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.96 E-value=0.0029 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998753
No 303
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.96 E-value=0.004 Score=58.34 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.7
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 304
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.95 E-value=0.0032 Score=54.18 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999997753
No 305
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.95 E-value=0.004 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998654
No 306
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.95 E-value=0.0031 Score=57.27 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.8
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+.+++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998764
No 307
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.95 E-value=0.0032 Score=54.89 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998864
No 308
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.94 E-value=0.0039 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++|.|++||||||+.+.|++++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998864
No 309
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.94 E-value=0.0032 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+++|+|++||||||+.+.|+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 310
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.94 E-value=0.0067 Score=55.09 Aligned_cols=30 Identities=33% Similarity=0.245 Sum_probs=25.9
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.....|..++|+||+|+|||||...|+.+.
T Consensus 29 ~v~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 29 LVDIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 344578899999999999999999998775
No 311
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.93 E-value=0.0035 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+++|.|++||||||+.+.|+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 312
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.92 E-value=0.0062 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999876553
No 313
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.015 Score=59.05 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.3
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|-.=+.+-||||+|||+|.+++|+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45556688999999999999999998653
No 314
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.90 E-value=0.0034 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998853
No 315
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.90 E-value=0.0042 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 316
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.89 E-value=0.0041 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 317
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.87 E-value=0.0036 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 318
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.86 E-value=0.0038 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 319
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.86 E-value=0.0033 Score=57.81 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.6
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHh
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
+.+|+.+++.||+||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3579999999999999999877664
No 320
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.86 E-value=0.0042 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998654
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.86 E-value=0.0037 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.85 E-value=0.0033 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.85 E-value=0.0048 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 324
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.84 E-value=0.0054 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.7
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.83 E-value=0.0038 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
=-++++|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 326
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.017 Score=58.47 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.1
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|-.=+.+-||||+|||+|.+++|+...
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 34556688999999999999999998653
No 327
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.80 E-value=0.0043 Score=58.94 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=23.7
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|...+.|.||+|+||||+.++|++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 346899999999999999999998753
No 328
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.80 E-value=0.0052 Score=57.02 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++-.++|.||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998643
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.80 E-value=0.0039 Score=54.13 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.79 E-value=0.0045 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 379999999999999999998764
No 331
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.79 E-value=0.01 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
..+.|.||+|+|||||++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987753
No 332
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.79 E-value=0.0041 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~ 36 (413)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 333
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.79 E-value=0.0052 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.1
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+...++.|+||+||||+|..+.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445578999999999999999998765
No 334
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.78 E-value=0.004 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 335
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.76 E-value=0.0056 Score=59.39 Aligned_cols=33 Identities=33% Similarity=0.332 Sum_probs=28.0
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+|+....+ .|.-++|+|+||+|||||...+.++
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 56655555 7999999999999999999999876
No 336
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.74 E-value=0.0029 Score=54.78 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.0
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
+.--++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999975
No 337
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.73 E-value=0.0045 Score=58.10 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999874
No 338
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.71 E-value=0.0045 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 339
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.71 E-value=0.0057 Score=58.86 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.6
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 59999999999999999999863
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0046 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999997653
No 341
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.70 E-value=0.007 Score=59.92 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
|-.++|+|.||+|||||+|.|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999884
No 342
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.0037 Score=60.72 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++++.++|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999865
No 343
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.70 E-value=0.0047 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999865
No 344
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.69 E-value=0.0054 Score=53.37 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.4
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998754
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.69 E-value=0.0041 Score=53.32 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 346
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.68 E-value=0.0055 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998754
No 347
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.68 E-value=0.005 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 348
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.68 E-value=0.0059 Score=58.80 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-.++|+|++|+|||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999999863
No 349
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.66 E-value=0.0049 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++++|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 350
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.65 E-value=0.013 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.++.-+.|.||+|+|||+|.++|+....
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4567899999999999999999987653
No 351
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.65 E-value=0.0046 Score=58.31 Aligned_cols=23 Identities=39% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.63 E-value=0.0049 Score=55.24 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 353
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.0078 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.1
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
.|=+++|+++.|.|++|+|||||..-++
T Consensus 24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999999999976543
No 354
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.62 E-value=0.0046 Score=54.94 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 355
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.59 E-value=0.0073 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..+.|.||+|+|||||+++++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 356
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.58 E-value=0.0063 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|+|||||+|.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 357
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.57 E-value=0.0053 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 358
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.57 E-value=0.0066 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.57 E-value=0.0049 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.57 E-value=0.0057 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 361
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.56 E-value=0.0055 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 362
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.56 E-value=0.0057 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 363
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.56 E-value=0.0069 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.55 E-value=0.0067 Score=56.37 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 365
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.55 E-value=0.0056 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 366
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.021 Score=57.24 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.0
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+|-.=+.+-||||+|||+|.+++|+...
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 3444578999999999999999998653
No 367
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.51 E-value=0.006 Score=58.24 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|||||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 368
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.51 E-value=0.0063 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.51 E-value=0.0061 Score=56.65 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.0081 Score=55.05 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..+..+.|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999998765
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.50 E-value=0.0074 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++.|+|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998765
No 372
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0053 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999864
No 373
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.49 E-value=0.0064 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|.+|||||||+|.+.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.49 E-value=0.0061 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999754
No 375
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.49 E-value=0.0062 Score=56.31 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=22.2
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++..+|.++++.|++||||||+.+.|+..+.
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456889999999999999999999987653
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.47 E-value=0.0077 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
..+++|.|++||||||+.+.|+.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999865
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.47 E-value=0.0055 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 378
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0058 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 379
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.46 E-value=0.0068 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.5
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 380
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.45 E-value=0.0077 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 381
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.024 Score=57.72 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.3
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|-.=+.+-||+|+|||+|.++||+...
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 34556688999999999999999998653
No 382
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.44 E-value=0.0065 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 383
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.44 E-value=0.0063 Score=53.86 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q 048308 15 LLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g 35 (413)
-++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999986
No 384
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.44 E-value=0.0072 Score=54.90 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 385
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.43 E-value=0.0037 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|+|||||+|.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 386
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.43 E-value=0.0072 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
--++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 387
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.43 E-value=0.0068 Score=61.00 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.6
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+.+++.|+|+|||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998653
No 388
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.42 E-value=0.0081 Score=57.93 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=25.6
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
|-+++|+++.|.||+|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999999888764
No 389
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0071 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.=-++|+|++|+|||||++.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 390
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.41 E-value=0.015 Score=51.87 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 391
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.41 E-value=0.029 Score=56.93 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.1
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++.+++++|++|+||||+...|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998654
No 392
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.40 E-value=0.0081 Score=57.01 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.++.|+|+|||||||+.+.|+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 393
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.40 E-value=0.0055 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 394
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.38 E-value=0.0073 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 395
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.38 E-value=0.0063 Score=60.36 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~ 36 (413)
++|+|+||+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
No 396
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.38 E-value=0.006 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 397
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0072 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 398
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.36 E-value=0.0071 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.35 E-value=0.0071 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.35 E-value=0.0079 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998654
No 401
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.34 E-value=0.0064 Score=52.54 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q 048308 15 LLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g 35 (413)
-++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 402
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.34 E-value=0.0058 Score=58.78 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.9
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..+.|.||+|+|||||++++++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999999998764
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.34 E-value=0.0074 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.33 E-value=0.0067 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 405
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0065 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 406
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.32 E-value=0.0073 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
=-++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 407
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.32 E-value=0.0074 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 408
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.31 E-value=0.0072 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|.+|+|||||+|.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 409
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.31 E-value=0.0081 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.0
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+..++|+|+||||||||++.+.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999998764
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.30 E-value=0.0066 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 411
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.30 E-value=0.0096 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999998754
No 412
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.29 E-value=0.0072 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 413
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.29 E-value=0.0081 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998753
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.28 E-value=0.0094 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.=-++|+|++|+|||||++.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3358999999999999999998753
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.27 E-value=0.0083 Score=57.00 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g 35 (413)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 416
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.27 E-value=0.011 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+.|.||+|+|||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998754
No 417
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.24 E-value=0.0078 Score=62.24 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred ceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 6 IRGVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
+++.+.+|..++|.|++||||||++++|..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 567778899999999999999999999864
No 418
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.22 E-value=0.0063 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.20 E-value=0.011 Score=53.85 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=24.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987654
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.18 E-value=0.0061 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 421
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.17 E-value=0.0094 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 422
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.17 E-value=0.0063 Score=61.69 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.5
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445566899999999999999999998887754
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.17 E-value=0.011 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.1
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455668899999999999999998754
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.0076 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998764
No 425
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.16 E-value=0.009 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999998764
No 426
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.15 E-value=0.0086 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.=-++|+|++|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999764
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.14 E-value=0.0057 Score=58.55 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=19.6
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 428
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.14 E-value=0.0082 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 429
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.0081 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++++|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.13 E-value=0.0084 Score=58.38 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=22.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
No 431
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.034 Score=56.15 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=23.6
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++-.=+.+-||+|+|||+|.+++|+...
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 4445689999999999999999998653
No 432
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.09 E-value=0.0076 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.6
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999988764
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.09 E-value=0.0094 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999864
No 434
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.08 E-value=0.012 Score=57.09 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+.+++|+||+|||||||.+.|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999998764
No 435
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.04 E-value=0.0087 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 436
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.04 E-value=0.0081 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.+++|.|++||||||+.+.|+.++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998865
No 437
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.02 E-value=0.0037 Score=58.30 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.|.||+|+|||||.+++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999764
No 438
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.013 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 439
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.98 E-value=0.006 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.98 E-value=0.0093 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 441
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.94 E-value=0.012 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 442
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.93 E-value=0.011 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.91 E-value=0.014 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
No 444
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.89 E-value=0.016 Score=57.08 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.6
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
|-+++|+++.|.|++|+|||||...++..
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999998877653
No 445
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.89 E-value=0.015 Score=56.58 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.5
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
|-+++|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999999874
No 446
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.88 E-value=0.018 Score=51.06 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=25.1
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+.....|.-++|.|+||+|||||...+..+
T Consensus 10 s~v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 10 NFLVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 344567889999999999999999888764
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.0054 Score=59.21 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.|.||+|+||||+++++++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 448
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.84 E-value=0.015 Score=53.30 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=55.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC---CcccChhccccEEEEecCCccCCCCCH-HHHHHHHHHc
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN---NNPLSRTVKRKTGFVAHSNVFYLHLTV-TETLVFIALF 86 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~---g~~~~~~~~~~~~~v~q~~~~~~~lTv-~e~l~f~~~~ 86 (413)
++|.++++.|++||||||+.+.|+..+.. .+.+.-. |.+..+..++ ++.+.. ..++. -|.|.|++..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~---~l~~~~---~~~~~~~~~llf~a~R 73 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINE---YLTDDS---FQLSDQAIHLLFSANR 73 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHH---HHHCTT---SCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHH---HHHhcc---cCCCHHHHHHHHHHHH
Confidence 46899999999999999999999987752 2433321 1121111221 222211 12332 2566666542
Q ss_pred CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308 87 RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123 (413)
Q Consensus 87 ~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i 123 (413)
. .... .|--+ +.+-+++++|= -.|+..+.+-
T Consensus 74 ~-~~~~-~I~pa-L~~g~~VI~DR---y~~S~~ayq~ 104 (216)
T 3tmk_A 74 W-EIVD-KIKKD-LLEGKNIVMDR---YVYSGVAYSA 104 (216)
T ss_dssp H-TTHH-HHHHH-HHTTCEEEEES---CHHHHHHHHH
T ss_pred H-HHHH-HHHHH-HHcCCEEEEec---cHhHHHHHHH
Confidence 2 1121 23333 34568899984 7777777764
No 449
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.011 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999865
No 450
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.81 E-value=0.015 Score=49.27 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=23.4
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.+.-+.|.||+|+|||++.++|+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 456678999999999999999998764
No 451
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.81 E-value=0.0086 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+.=-++++|++|+|||||++.+.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3446899999999999999999654
No 452
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.74 E-value=0.0057 Score=66.81 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=28.5
Q ss_pred eeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++.+++|+.++|.||||+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55678999999999999999999999998753
No 453
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.74 E-value=0.0063 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=4.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 454
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.73 E-value=0.016 Score=54.92 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+++.-+.|.||+|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999988764
No 455
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.72 E-value=0.015 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
-.++++|.||+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 3789999999999999999998753
No 456
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.014 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 457
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.70 E-value=0.017 Score=52.72 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=24.2
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+|.++++-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.017 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
|.+++|-|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998764
No 459
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.67 E-value=0.019 Score=52.82 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.9
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
No 460
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.66 E-value=0.013 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999764
No 461
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.60 E-value=0.052 Score=59.04 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=24.6
Q ss_pred EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++|-.-+.|-||+|+|||+|.|++++...
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44556689999999999999999998764
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.58 E-value=0.017 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-.++|+|.+|+|||||++.+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 463
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.56 E-value=0.02 Score=50.90 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=19.6
Q ss_pred cCcEEEEECCCCCCHHHHHHHHh
Q 048308 12 LGELLAILGPSGRGKTTLPTTLG 34 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~ 34 (413)
+|.+..+.||.||||||++.-++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999974443
No 464
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.54 E-value=0.014 Score=59.17 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.++|+|++|+|||||+|.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999885
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.50 E-value=0.022 Score=55.17 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
..+++|+||+|||||||.+.|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45899999999999999999997653
No 466
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.49 E-value=0.015 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
=-++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999754
No 467
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.47 E-value=0.017 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999764
No 468
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.44 E-value=0.021 Score=58.38 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=25.2
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+-+|+..+|.|+||+|||||++.|++..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 35679999999999999999999997653
No 469
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.43 E-value=0.015 Score=51.68 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999764
No 470
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.43 E-value=0.019 Score=54.68 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++-..+.|.||+|+|||+|.++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334577888999999999999999765
No 471
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.42 E-value=0.021 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998754
No 472
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.39 E-value=0.021 Score=50.33 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998654
No 473
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.38 E-value=0.017 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.9
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998765
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.32 E-value=0.022 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.0
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..-+.|.||+|+|||||.++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455678999999999999999998753
No 475
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.27 E-value=0.025 Score=54.46 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+|..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 456679999999999999999998764
No 476
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.26 E-value=0.023 Score=55.31 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577899999999999999999987654
No 477
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.16 E-value=0.028 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999998643
No 478
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.16 E-value=0.024 Score=56.82 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
-.+++|+||+|||||||.+.|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35889999999999999999987653
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.12 E-value=0.025 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.4
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++.-+.|.||+|+|||||.+.++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998765
No 480
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.08 E-value=0.017 Score=56.59 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|.+|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.01 E-value=0.026 Score=55.21 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.4
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56678999999999999999999865
No 482
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.98 E-value=0.03 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q 048308 14 ELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 14 e~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-.++++|.||+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999874
No 483
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.95 E-value=0.017 Score=58.58 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=27.5
Q ss_pred cccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308 3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 3444456899999999999999999997777643
No 484
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.89 E-value=0.033 Score=55.11 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=24.8
Q ss_pred eEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308 8 GVSSLGELLAILGPSGRGKTTLPTTLGG 35 (413)
Q Consensus 8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g 35 (413)
|-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4689999999999999999999877654
No 485
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.87 E-value=0.032 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q 048308 13 GELLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 13 Ge~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998776
No 486
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.93 E-value=0.011 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4799999999999999988753
No 487
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.84 E-value=0.0076 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.82 E-value=0.027 Score=56.27 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 048308 16 LAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 16 ~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++|+|.+++|||||+|.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 6899999999999999999864
No 489
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.81 E-value=0.036 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.2
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999997653
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.77 E-value=0.026 Score=56.91 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~ 36 (413)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 491
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.043 Score=54.45 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---------CCeeEEEEECCcc
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRLST---------GETRGNIDYNNNP 52 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~ 52 (413)
-++|+|.|-+|||||+|+|+|.... .+..|.+.++|.+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 5899999999999999999986431 1356888887754
No 492
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.74 E-value=0.018 Score=48.61 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=22.6
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+.+.-+.|.||+|+|||++.+.|+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 345668999999999999999997653
No 493
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.72 E-value=0.062 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q 048308 15 LLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.++|+|.+++|||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 494
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.70 E-value=0.034 Score=54.13 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 495
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.031 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.5
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
+|-.=+.+-||||+|||+|.+++|+...
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445688999999999999999998653
No 496
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.63 E-value=0.021 Score=51.33 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHH-HhCC
Q 048308 15 LLAILGPSGRGKTTLPTT-LGGR 36 (413)
Q Consensus 15 ~~~ilG~sGsGKSTLl~~-l~g~ 36 (413)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999998 5554
No 497
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.58 E-value=0.031 Score=58.81 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.8
Q ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 12 LGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
+--.++|+|++|+|||||+|.|.|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 34568999999999999999999974
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.52 E-value=0.035 Score=54.39 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.3
Q ss_pred ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 11 SLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
++..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668899999999999999999765
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.50 E-value=0.024 Score=57.58 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=23.9
Q ss_pred EecCcE--EEEECCCCCCHHHHHHHHhCCCC
Q 048308 10 SSLGEL--LAILGPSGRGKTTLPTTLGGRLS 38 (413)
Q Consensus 10 ~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~~ 38 (413)
++.|++ +.|.||+|+|||||.++|+....
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344554 89999999999999999998754
No 500
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.50 E-value=0.045 Score=50.32 Aligned_cols=29 Identities=31% Similarity=0.225 Sum_probs=22.2
Q ss_pred EEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308 9 VSSLGELLAILGPSGRGKTTLPTTLGGRL 37 (413)
Q Consensus 9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~ 37 (413)
.-.+|.+..+.|+.|+||||++--++.+.
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999876665554
Done!