BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048309
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+D L+ AQ+ K L + K + +L++GCGWG + V + N G+TLS Q
Sbjct: 41 DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA 100
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
+ + V + R+ L + Q + DRI+S E GHE + +F LL
Sbjct: 101 NHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL 158
Query: 166 AKDGLLVLQ-FSSTPDARYNEYRLSSD--------FIKEYIFPGGCLPSLSRI 209
DG+++L + +E L FI IFPGG LPS+ +
Sbjct: 159 PADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109
L+ AQ K L ++K + +L+IGCGWGT V + N G+TLS Q E
Sbjct: 71 LEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE 130
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
+ ++ L + A+ DRI+S E E GHE +++F C +++ DG
Sbjct: 131 QVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADG 188
Query: 170 LLVLQFSSTPDARYNEYRLSS-------------DFIKEYIFPGGCLPS 205
+ +Q S + Y+ Y +++ FI IFPGG LPS
Sbjct: 189 RMTVQSSVS----YHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+D L+ AQ+ K L + K + +L++GCGWG V + N G+TLS Q
Sbjct: 41 DDXTLQEAQIAKIDLALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVVGLTLSKNQA 100
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
+ + V + R+ L + Q + DRI+S E GHE + +F LL
Sbjct: 101 NHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL 158
Query: 166 AKDGLLVLQ-FSSTPDARYNEYRLSSD--------FIKEYIFPGGCLPSLSRI 209
DG+ +L + +E L FI IFPGG LPS+ +
Sbjct: 159 PADGVXLLHTITGLHPKEIHERGLPXSFTFARFLKFIVTEIFPGGRLPSIPXV 211
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 32/211 (15%)
Query: 29 NSLAQAHRNISYHYDLDED-------------------EDLKV--AQMRKHSLLIEKARV 67
N L ++ HYDL +D ED+ + AQ+ K L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
+L+IGCGWG + Q N G+TLS Q + + +E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAG 122
Query: 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ-FSSTPDARYNEY 186
+ Q + DRI+S E GH+ ++F +L DG+L+L + + ++
Sbjct: 123 WEQF--NEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 187 RLS--------SDFIKEYIFPGGCLPSLSRI 209
L FI IFPGG P++ +
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV 211
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+D L+ AQ+ K L + K + +L+IGCGWG + + N G+TLS Q
Sbjct: 41 DDMTLQEAQIAKIDLALGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQA 100
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
+ + ++ R+ L + + + DRI+S E GH+ +F L
Sbjct: 101 GHVQKMFDQMDTPRSRRVLLEGWEKFDEP--VDRIVSIGAFEHFGHQRYHHFFEVTHRTL 158
Query: 166 AKDGLLVLQFSSTP---DARYNEYRLS------SDFIKEYIFPGGCLPSLSRI 209
DG ++L P + R L+ + FI IFPGG LPS+ +
Sbjct: 159 PADGKMLLHTIVRPTFKEGREKGLTLTHELVHFTKFILAEIFPGGWLPSIPTV 211
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 47 DEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK 106
D L+ AQ K L ++K + +L+IGCGWG+ V + N G+TLS Q
Sbjct: 50 DMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYA 109
Query: 107 YAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME-------AVGHEYMEEYFG 159
+ + +E + + + + + DRI+S E G E + +F
Sbjct: 110 HDKAMFDEVDSPRRKEVRIQGWEEFDEP--VDRIVSLGAFEHFADGAGDAGFERYDTFFK 167
Query: 160 CCESLLAKDGLLVLQFSSTPDA-RYNEYRLSS--------DFIKEYIFPGGCLPSLSRI 209
+L DG ++L + PD E L+S FI IFPGG LP +S++
Sbjct: 168 KFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQV 226
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
LL V +++ GCG G + ++ GC G+TLSA Q ++ + E G+ D
Sbjct: 116 LLDHLGPVGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDD 175
Query: 120 HIRLYLCDYRQLP 132
H+R +C+ P
Sbjct: 176 HVRSRVCNMLDTP 188
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 37 NISYHYDLDEDEDLKV--AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
N+ + Y D D+ V A R I V VL++GCG G A+ +
Sbjct: 27 NLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRSGDRVLDVGCGIGKPAVRLATARDVR 86
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146
TGI++S Q+ A + AGL + + D LP + +D + + E +
Sbjct: 87 VTGISISRPQVNQANARATAAGLANRVTFSYADAXDLPFEDASFDAVWALESL 139
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
L+ + + +++ GCG G + R+ G G+TLSA Q + + E + D
Sbjct: 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD 167
Query: 120 HIRLYLCDYRQLP 132
H+R +C+ P
Sbjct: 168 HVRSRVCNMLDTP 180
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
+L+E V K+ ++L++GCG+G I + + T ++ +K A+ + L +
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVKST-TXADINRRAIKLAKENIKLNNLDN 101
Query: 120 H-IRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
+ IR+ D + K +KY++II+ + A G E + + LL +G
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNG 151
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
+ ++ E+L+IGCG G ++E+ + G + TGI +++E ++ AE GL
Sbjct: 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN 78
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VL+IGCG G F +E+ ++ G G+ ++ + +K+ E K N D I YL + LP
Sbjct: 45 VLDIGCGRGEF-LELCKEEGIESIGVDINEDMIKFCEGKFNVVK-SDAIE-YL---KSLP 98
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYN 184
K D ++ +E + E + E C S + +V++ S P + Y+
Sbjct: 99 D-KYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIE-SPNPTSLYS 148
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 40 YHYDLDEDEDLKVAQMRKH----SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNY 95
Y +D+DE ++ A +R S L + ++ + L++G G+G A +VR+ G +
Sbjct: 50 YKEPVDQDE-IREASLRTDEWLASELAXTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSI 108
Query: 96 TGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIIS 142
+ ++ Q K E N+AGL D+I + + ++P + YD I S
Sbjct: 109 DCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS 156
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG 116
K++ L R +L++G G G R G TGI S+ A+ + E G
Sbjct: 24 KYATLGRVLRXKPGTRILDLGSGSGEXLCTWARDHGITGTGIDXSSLFTAQAKRRAEELG 83
Query: 117 LQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167
+ + + D A Y C++ VG ++ F E LLA+
Sbjct: 84 VSERVHFIHND------AAGYVANEKCDVAACVGATWIAGGFAGAEELLAQ 128
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VL+ G G + + + G GI +S Q+K AE E + + + D R+LP
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDIRKLP 84
Query: 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNE 185
K + + S + ++E + +L GL + F +T D RYN+
Sbjct: 85 FKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 74 LEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
+E+G G G F +Q NY GI + + YA KV E G+ +I+L D L
Sbjct: 46 VEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDL 103
>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
Length = 727
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 10 ALVSKVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSK 69
A V +V SY + N L +N+S H + + DLK A R L++ R +K
Sbjct: 143 AGVHRVTHGSYSFASFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTK 202
Query: 70 EHEVLEI 76
E+ +I
Sbjct: 203 VAEMADI 209
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111
V + + +I+ + K+ VL++GCG G ++ + + G+ +S+ ++ A+
Sbjct: 21 VRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKEL 79
Query: 112 VNEAGLQDHIRL 123
V G D I L
Sbjct: 80 VELNGFSDKITL 91
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 58 HSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQTGCN--YTGITLSA 102
H L I +A +V ++LEIGCG G + + Q G + TGI +++
Sbjct: 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIAS 78
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115
R HS ++E +V K + L++GCG G ++ + G + +A + E ++
Sbjct: 19 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLA-ANGYDVDAWDKNAMSIANVE-RIKSI 76
Query: 116 GLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146
D++ + D L ++YD I+S ++
Sbjct: 77 ENLDNLHTRVVDLNNLTFDRQYDFILSTVVL 107
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108
H VL++ CG G +I +V + G + T + S + +KYA
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 94
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108
H VL++ CG G +I +V + G + T + S + +KYA
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 94
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108
H VL++ CG G +I +V + G + T + S + +KYA
Sbjct: 59 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 95
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein
From Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein
From Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein
From Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein
From Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 56 RKHSLLIEKARVSKEHEVLEIGCGWG 81
R HS ++E +V K + L++GCG G
Sbjct: 20 RTHSEVLEAVKVVKPGKTLDLGCGNG 45
>pdb|2OQC|A Chain A, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
pdb|2OQC|B Chain B, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
Length = 327
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 80 WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139
W + A QT + G+ + +A+ +NE+GL C P +Y++
Sbjct: 38 WNSEADGRAHQTQYAFIGMGRKLGNILFAD-GINESGLS-------CAALYFPGYAEYEK 89
Query: 140 IISCEMMEAVGHEYMEEYFGCCESL 164
I + + V HE++ C+SL
Sbjct: 90 TIREDTVHIVPHEFVTWVLSVCQSL 114
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 67 VSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY 124
V KE EVL++GC G+GT+ + +TG G+ +S ++ K E G +
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKL---SRTGYKAVGVDISEVXIQ----KGKERGEGPDLSFI 103
Query: 125 LCDYRQLP-KAKKYDRIISCEMME 147
D LP + ++++ I + +E
Sbjct: 104 KGDLSSLPFENEQFEAIXAINSLE 127
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 73 VLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130
VLE+G CG+ + + Q G + ++ + + +N AGLQD + + +
Sbjct: 62 VLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 121
Query: 131 L-PK-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171
L P+ KKYD + ++ V ++ ++ + LL K GLL
Sbjct: 122 LIPQLKKKYD----VDTLDMVFLDHWKDRYLPDTLLLEKCGLL 160
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 73 VLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130
VLE+G CG+ + + Q G + ++ + + +N AGLQD + + +
Sbjct: 64 VLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 123
Query: 131 L-PK-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171
L P+ KKYD + ++ V ++ ++ + LL K GLL
Sbjct: 124 LIPQLKKKYD----VDTLDMVFLDHWKDRYLPDTLLLEKCGLL 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,162,132
Number of Sequences: 62578
Number of extensions: 306904
Number of successful extensions: 679
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 40
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)