Query 048309
Match_columns 288
No_of_seqs 281 out of 3567
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 1.9E-39 4.2E-44 278.4 25.0 230 24-260 6-283 (283)
2 PF02353 CMAS: Mycolic acid cy 100.0 3.7E-39 8E-44 280.6 21.4 223 30-256 2-273 (273)
3 PRK11705 cyclopropane fatty ac 100.0 2.3E-33 4.9E-38 255.7 26.9 226 25-263 103-375 (383)
4 PLN02244 tocopherol O-methyltr 99.9 1.9E-23 4.2E-28 188.3 24.0 210 48-262 92-340 (340)
5 COG2226 UbiE Methylase involve 99.9 2.5E-24 5.5E-29 182.1 13.4 152 26-181 8-162 (238)
6 PF01209 Ubie_methyltran: ubiE 99.9 1.2E-24 2.7E-29 185.5 10.9 151 27-181 5-159 (233)
7 smart00828 PKS_MT Methyltransf 99.9 2.7E-22 5.8E-27 171.0 18.5 179 71-263 1-205 (224)
8 PLN02233 ubiquinone biosynthes 99.9 5.8E-21 1.3E-25 166.2 14.6 149 30-181 34-188 (261)
9 KOG1540 Ubiquinone biosynthesi 99.9 2.8E-20 6.1E-25 155.1 16.0 182 25-215 56-247 (296)
10 PLN02396 hexaprenyldihydroxybe 99.8 7E-21 1.5E-25 169.3 12.2 146 68-216 130-280 (322)
11 PTZ00098 phosphoethanolamine N 99.8 4.1E-19 8.8E-24 154.8 22.0 155 56-219 39-195 (263)
12 TIGR02752 MenG_heptapren 2-hep 99.8 2.7E-20 5.8E-25 159.4 13.4 150 28-180 4-156 (231)
13 PRK11036 putative S-adenosyl-L 99.8 7.3E-20 1.6E-24 159.0 15.4 119 56-178 32-152 (255)
14 PRK15451 tRNA cmo(5)U34 methyl 99.8 6.8E-19 1.5E-23 152.2 19.7 125 53-179 41-168 (247)
15 PF12847 Methyltransf_18: Meth 99.8 2.1E-19 4.5E-24 136.3 13.3 107 69-175 1-111 (112)
16 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.9E-20 4E-25 156.1 7.8 109 68-181 58-167 (243)
17 PRK11207 tellurite resistance 99.8 7.6E-19 1.6E-23 146.8 15.2 115 60-176 21-135 (197)
18 PLN02336 phosphoethanolamine N 99.8 7.5E-18 1.6E-22 159.0 22.5 152 57-219 254-407 (475)
19 PRK15068 tRNA mo(5)U34 methylt 99.8 4.1E-18 8.9E-23 152.3 18.1 161 56-221 109-269 (322)
20 PRK10258 biotin biosynthesis p 99.8 1.8E-18 3.9E-23 150.0 13.7 137 29-179 7-144 (251)
21 TIGR00452 methyltransferase, p 99.8 1E-17 2.2E-22 148.6 18.4 161 56-221 108-268 (314)
22 TIGR00477 tehB tellurite resis 99.8 4.7E-18 1E-22 141.7 14.3 114 60-176 21-134 (195)
23 PF08241 Methyltransf_11: Meth 99.8 1.2E-18 2.5E-23 127.6 9.4 94 74-173 1-95 (95)
24 TIGR00740 methyltransferase, p 99.8 2.9E-17 6.2E-22 141.4 19.6 141 37-179 20-165 (239)
25 KOG1270 Methyltransferases [Co 99.8 1.4E-18 3E-23 145.9 10.7 142 70-216 90-240 (282)
26 PRK01683 trans-aconitate 2-met 99.8 8E-18 1.7E-22 146.5 15.6 116 52-175 14-130 (258)
27 PF13847 Methyltransf_31: Meth 99.8 4.3E-18 9.3E-23 136.4 12.7 107 68-177 2-112 (152)
28 PRK14103 trans-aconitate 2-met 99.8 3.5E-18 7.5E-23 148.5 12.7 113 54-176 14-127 (255)
29 PLN02490 MPBQ/MSBQ methyltrans 99.8 6.4E-18 1.4E-22 150.9 14.2 211 24-263 69-283 (340)
30 PF03848 TehB: Tellurite resis 99.8 3E-17 6.5E-22 134.8 14.4 116 59-177 20-135 (192)
31 PRK13944 protein-L-isoaspartat 99.7 4E-17 8.6E-22 137.2 15.1 149 16-175 18-173 (205)
32 PRK05785 hypothetical protein; 99.7 1.9E-17 4.2E-22 141.0 12.2 128 29-168 9-140 (226)
33 PRK11873 arsM arsenite S-adeno 99.7 1.1E-16 2.4E-21 140.4 16.5 113 65-180 73-188 (272)
34 PRK00216 ubiE ubiquinone/menaq 99.7 3E-17 6.6E-22 140.7 12.7 150 29-180 11-163 (239)
35 TIGR00138 gidB 16S rRNA methyl 99.7 1.5E-16 3.2E-21 131.0 15.3 99 69-174 42-141 (181)
36 PRK00107 gidB 16S rRNA methylt 99.7 2.3E-16 5.1E-21 130.1 16.4 102 67-175 43-145 (187)
37 PRK12335 tellurite resistance 99.7 9.5E-17 2.1E-21 141.8 14.9 104 69-175 120-223 (287)
38 KOG4300 Predicted methyltransf 99.7 4.9E-17 1.1E-21 131.7 11.1 117 61-180 68-187 (252)
39 TIGR02469 CbiT precorrin-6Y C5 99.7 4.2E-16 9E-21 119.9 15.6 114 57-176 7-123 (124)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.1E-16 2.3E-21 135.9 13.2 144 32-180 2-148 (223)
41 COG4106 Tam Trans-aconitate me 99.7 2.6E-17 5.7E-22 134.2 8.9 117 52-176 13-130 (257)
42 TIGR00080 pimt protein-L-isoas 99.7 1.4E-16 3E-21 135.0 13.5 150 16-177 23-179 (215)
43 PF08003 Methyltransf_9: Prote 99.7 1.9E-16 4.2E-21 136.7 14.2 158 57-219 103-260 (315)
44 TIGR03840 TMPT_Se_Te thiopurin 99.7 2.3E-16 4.9E-21 133.0 14.2 118 58-179 23-156 (213)
45 TIGR02716 C20_methyl_CrtF C-20 99.7 4.9E-16 1.1E-20 138.6 17.2 120 59-180 139-259 (306)
46 PRK13942 protein-L-isoaspartat 99.7 1.8E-16 3.9E-21 133.9 13.6 150 16-175 22-176 (212)
47 PF13649 Methyltransf_25: Meth 99.7 3.4E-17 7.4E-22 122.0 7.9 95 73-169 1-101 (101)
48 TIGR02072 BioC biotin biosynth 99.7 3.9E-16 8.4E-21 133.8 14.7 120 53-179 15-139 (240)
49 TIGR03587 Pse_Me-ase pseudamin 99.7 9.5E-16 2.1E-20 128.5 14.5 118 52-180 28-147 (204)
50 PF05401 NodS: Nodulation prot 99.7 2.8E-16 6.2E-21 127.8 10.5 110 63-176 37-147 (201)
51 PF13489 Methyltransf_23: Meth 99.7 2.4E-16 5.2E-21 126.8 9.8 99 67-179 20-119 (161)
52 PRK13255 thiopurine S-methyltr 99.7 1.1E-15 2.4E-20 129.2 14.3 116 58-177 26-157 (218)
53 TIGR02021 BchM-ChlM magnesium 99.7 1.2E-15 2.7E-20 129.5 14.5 115 56-173 40-156 (219)
54 PF08242 Methyltransf_12: Meth 99.7 1.5E-17 3.3E-22 123.3 1.2 95 74-171 1-99 (99)
55 PRK08317 hypothetical protein; 99.7 2.8E-15 6E-20 128.4 14.8 116 58-177 8-126 (241)
56 smart00138 MeTrc Methyltransfe 99.7 2.3E-15 5E-20 131.1 14.3 116 60-175 90-242 (264)
57 KOG1271 Methyltransferases [Ge 99.6 1.3E-15 2.8E-20 121.2 10.9 160 13-178 13-184 (227)
58 PRK05134 bifunctional 3-demeth 99.6 3.1E-15 6.7E-20 128.2 14.0 142 31-177 8-153 (233)
59 PRK08287 cobalt-precorrin-6Y C 99.6 5.9E-15 1.3E-19 122.3 15.0 110 60-176 22-132 (187)
60 PF05175 MTS: Methyltransferas 99.6 2E-15 4.3E-20 123.2 11.0 106 69-175 31-140 (170)
61 PLN03075 nicotianamine synthas 99.6 5.4E-15 1.2E-19 129.0 13.4 113 62-175 116-233 (296)
62 COG2518 Pcm Protein-L-isoaspar 99.6 3.5E-15 7.5E-20 123.0 11.0 151 16-180 18-174 (209)
63 PRK06922 hypothetical protein; 99.6 6.6E-15 1.4E-19 139.5 14.2 111 67-179 416-541 (677)
64 PRK07580 Mg-protoporphyrin IX 99.6 3.2E-14 6.9E-19 121.5 15.9 101 67-170 61-161 (230)
65 PRK00121 trmB tRNA (guanine-N( 99.6 5.8E-15 1.3E-19 123.8 10.9 106 69-175 40-156 (202)
66 PRK15001 SAM-dependent 23S rib 99.6 1.5E-14 3.3E-19 131.1 14.4 117 59-175 218-340 (378)
67 COG2242 CobL Precorrin-6B meth 99.6 4.7E-14 1E-18 113.9 15.1 120 49-177 16-137 (187)
68 PLN02336 phosphoethanolamine N 99.6 1.3E-14 2.9E-19 136.9 14.1 117 58-178 26-145 (475)
69 PRK00377 cbiT cobalt-precorrin 99.6 3.5E-14 7.6E-19 118.7 15.0 111 60-175 31-145 (198)
70 PRK00312 pcm protein-L-isoaspa 99.6 3.4E-14 7.4E-19 120.1 15.0 148 16-176 24-176 (212)
71 TIGR00537 hemK_rel_arch HemK-r 99.6 3.1E-14 6.7E-19 117.2 13.3 109 65-177 15-142 (179)
72 PRK06202 hypothetical protein; 99.6 2.5E-14 5.4E-19 122.6 12.6 107 67-179 58-170 (232)
73 PRK14121 tRNA (guanine-N(7)-)- 99.6 2.5E-14 5.4E-19 129.3 12.9 118 58-176 111-236 (390)
74 TIGR01983 UbiG ubiquinone bios 99.6 8.7E-14 1.9E-18 118.4 15.3 105 69-177 45-151 (224)
75 PF01135 PCMT: Protein-L-isoas 99.6 1.3E-14 2.8E-19 121.6 9.5 148 16-176 18-173 (209)
76 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.4E-14 3E-19 120.7 9.6 106 69-175 16-132 (194)
77 PLN02585 magnesium protoporphy 99.6 4.2E-14 9.1E-19 125.6 13.2 111 58-172 130-247 (315)
78 COG4123 Predicted O-methyltran 99.6 3.1E-14 6.8E-19 120.8 10.9 113 62-174 37-169 (248)
79 PRK09489 rsmC 16S ribosomal RN 99.6 8.7E-14 1.9E-18 125.3 14.4 113 60-175 187-303 (342)
80 PRK14967 putative methyltransf 99.6 1.1E-13 2.4E-18 117.9 14.3 117 57-175 24-159 (223)
81 PF13659 Methyltransf_26: Meth 99.5 1.9E-14 4.1E-19 109.8 8.5 107 70-176 1-116 (117)
82 TIGR03438 probable methyltrans 99.5 7.8E-14 1.7E-18 124.0 13.2 147 27-178 26-180 (301)
83 PRK07402 precorrin-6B methylas 99.5 2E-13 4.4E-18 113.9 14.8 111 59-176 30-143 (196)
84 TIGR00406 prmA ribosomal prote 99.5 2.1E-13 4.6E-18 120.4 15.4 111 60-177 151-261 (288)
85 PRK13943 protein-L-isoaspartat 99.5 1.2E-13 2.7E-18 123.0 13.8 149 17-175 22-180 (322)
86 TIGR03533 L3_gln_methyl protei 99.5 2.2E-13 4.7E-18 120.0 15.2 109 68-176 120-252 (284)
87 PRK13256 thiopurine S-methyltr 99.5 2E-13 4.3E-18 115.3 13.2 113 62-177 36-165 (226)
88 PRK11088 rrmA 23S rRNA methylt 99.5 1.6E-13 3.5E-18 120.3 12.7 95 68-177 84-183 (272)
89 TIGR00536 hemK_fam HemK family 99.5 6.7E-13 1.5E-17 117.1 15.3 119 58-176 102-245 (284)
90 TIGR01177 conserved hypothetic 99.5 5.4E-13 1.2E-17 120.1 14.9 115 60-176 173-295 (329)
91 PRK11805 N5-glutamine S-adenos 99.5 5.5E-13 1.2E-17 118.6 14.7 106 70-175 134-263 (307)
92 PRK14968 putative methyltransf 99.5 5.1E-13 1.1E-17 110.3 13.6 108 67-175 21-148 (188)
93 TIGR03534 RF_mod_PrmC protein- 99.5 3E-13 6.4E-18 117.0 12.6 117 56-174 75-216 (251)
94 PRK00517 prmA ribosomal protei 99.5 6.9E-13 1.5E-17 114.9 14.6 97 68-176 118-214 (250)
95 PRK04266 fibrillarin; Provisio 99.5 5E-13 1.1E-17 113.6 13.3 105 63-174 66-175 (226)
96 PF07021 MetW: Methionine bios 99.5 3.3E-13 7.2E-18 109.7 11.1 97 68-177 12-111 (193)
97 PRK11188 rrmJ 23S rRNA methylt 99.5 5E-13 1.1E-17 112.5 11.6 114 53-178 34-168 (209)
98 COG2264 PrmA Ribosomal protein 99.5 6.6E-13 1.4E-17 115.7 12.4 104 69-177 162-265 (300)
99 PLN02781 Probable caffeoyl-CoA 99.5 3.2E-12 6.8E-17 109.5 16.3 118 51-176 53-179 (234)
100 PRK04457 spermidine synthase; 99.5 4.1E-13 8.8E-18 116.9 10.9 111 68-178 65-180 (262)
101 KOG1541 Predicted protein carb 99.5 4.4E-13 9.5E-18 110.0 10.0 134 35-177 16-162 (270)
102 COG2813 RsmC 16S RNA G1207 met 99.5 1.4E-12 3.1E-17 113.0 13.4 116 59-176 148-267 (300)
103 PRK09328 N5-glutamine S-adenos 99.4 2.9E-12 6.3E-17 112.4 15.3 117 58-175 97-238 (275)
104 PF05724 TPMT: Thiopurine S-me 99.4 6E-13 1.3E-17 112.4 10.4 119 58-177 26-157 (218)
105 PRK14904 16S rRNA methyltransf 99.4 2.6E-12 5.6E-17 120.2 14.7 117 62-179 243-381 (445)
106 PRK10901 16S rRNA methyltransf 99.4 3.3E-12 7.1E-17 118.9 14.9 117 60-178 235-375 (427)
107 PF03291 Pox_MCEL: mRNA cappin 99.4 1.5E-12 3.3E-17 116.4 12.1 109 69-177 62-188 (331)
108 KOG2361 Predicted methyltransf 99.4 6.1E-13 1.3E-17 110.7 8.5 109 72-182 74-190 (264)
109 PRK14966 unknown domain/N5-glu 99.4 4.1E-12 8.9E-17 115.7 14.5 116 56-175 240-381 (423)
110 PF06325 PrmA: Ribosomal prote 99.4 1.9E-12 4.2E-17 113.6 11.9 110 59-177 152-261 (295)
111 PRK14903 16S rRNA methyltransf 99.4 3.2E-12 7E-17 118.8 13.8 118 61-179 229-370 (431)
112 TIGR00446 nop2p NOL1/NOP2/sun 99.4 5.2E-12 1.1E-16 110.2 13.8 116 63-179 65-203 (264)
113 TIGR02081 metW methionine bios 99.4 1.9E-12 4.2E-17 107.8 10.6 96 60-167 6-104 (194)
114 smart00650 rADc Ribosomal RNA 99.4 6.8E-12 1.5E-16 102.2 13.2 110 59-175 3-113 (169)
115 PTZ00146 fibrillarin; Provisio 99.4 1.1E-11 2.3E-16 108.0 15.1 105 63-174 126-236 (293)
116 PRK01544 bifunctional N5-gluta 99.4 6E-12 1.3E-16 119.1 14.5 107 69-175 138-269 (506)
117 PF00891 Methyltransf_2: O-met 99.4 1.3E-11 2.8E-16 106.4 14.8 113 59-181 90-205 (241)
118 PRK14902 16S rRNA methyltransf 99.4 7.6E-12 1.6E-16 117.1 14.3 118 60-178 241-382 (444)
119 cd02440 AdoMet_MTases S-adenos 99.4 5.3E-12 1.2E-16 92.6 10.6 101 72-174 1-103 (107)
120 TIGR00563 rsmB ribosomal RNA s 99.4 8.6E-12 1.9E-16 116.1 14.0 122 59-180 228-373 (426)
121 PRK00811 spermidine synthase; 99.4 5.1E-12 1.1E-16 111.3 11.7 107 68-174 75-190 (283)
122 PLN02232 ubiquinone biosynthes 99.4 2.3E-12 4.9E-17 104.1 8.7 84 96-181 1-87 (160)
123 TIGR00438 rrmJ cell division p 99.4 6.4E-12 1.4E-16 104.2 11.5 106 58-175 20-146 (188)
124 PRK14901 16S rRNA methyltransf 99.4 9.1E-12 2E-16 116.2 13.8 117 61-178 244-387 (434)
125 COG2519 GCD14 tRNA(1-methylade 99.4 1.3E-11 2.9E-16 104.1 13.1 108 59-173 84-193 (256)
126 COG4976 Predicted methyltransf 99.4 1.8E-13 3.9E-18 112.9 1.5 117 56-181 112-231 (287)
127 COG4122 Predicted O-methyltran 99.3 2.9E-11 6.3E-16 101.3 14.4 120 52-179 45-170 (219)
128 PHA03411 putative methyltransf 99.3 8.7E-12 1.9E-16 107.5 11.4 101 68-174 63-182 (279)
129 PLN02476 O-methyltransferase 99.3 3.9E-11 8.5E-16 104.3 15.5 121 49-177 101-230 (278)
130 PF01596 Methyltransf_3: O-met 99.3 1.3E-11 2.8E-16 103.3 12.1 121 49-177 28-157 (205)
131 TIGR03704 PrmC_rel_meth putati 99.3 2.7E-11 5.9E-16 104.8 14.4 115 57-175 73-216 (251)
132 KOG1975 mRNA cap methyltransfe 99.3 3.2E-12 6.9E-17 110.4 8.1 141 33-173 71-235 (389)
133 PRK15128 23S rRNA m(5)C1962 me 99.3 2E-11 4.4E-16 111.9 13.7 108 69-176 220-340 (396)
134 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.9E-11 4.1E-16 120.2 13.7 108 69-176 538-657 (702)
135 COG2890 HemK Methylase of poly 99.3 4E-11 8.7E-16 105.2 14.0 103 72-176 113-239 (280)
136 PLN02589 caffeoyl-CoA O-methyl 99.3 5.6E-11 1.2E-15 102.0 14.0 154 14-176 28-191 (247)
137 KOG3010 Methyltransferase [Gen 99.3 5.5E-12 1.2E-16 105.1 6.7 100 72-175 36-137 (261)
138 PF05891 Methyltransf_PK: AdoM 99.3 2.2E-11 4.8E-16 101.0 10.0 127 53-180 33-166 (218)
139 PRK10909 rsmD 16S rRNA m(2)G96 99.3 8.6E-11 1.9E-15 97.9 13.4 106 68-177 52-161 (199)
140 PF06080 DUF938: Protein of un 99.3 1.8E-10 4E-15 95.0 15.1 117 59-175 15-141 (204)
141 PRK13168 rumA 23S rRNA m(5)U19 99.3 8.2E-11 1.8E-15 110.1 14.7 115 54-176 282-401 (443)
142 PRK03522 rumB 23S rRNA methylu 99.3 5.9E-11 1.3E-15 106.3 12.7 112 59-177 163-276 (315)
143 TIGR00417 speE spermidine synt 99.3 7E-11 1.5E-15 103.5 12.7 107 68-174 71-185 (270)
144 PF02390 Methyltransf_4: Putat 99.2 5E-11 1.1E-15 99.2 10.0 104 71-175 19-133 (195)
145 PLN02366 spermidine synthase 99.2 1.7E-10 3.6E-15 102.4 13.5 107 68-174 90-205 (308)
146 PHA03412 putative methyltransf 99.2 9.4E-11 2E-15 98.9 10.5 98 69-173 49-160 (241)
147 PF08704 GCD14: tRNA methyltra 99.2 1.3E-10 2.9E-15 99.5 10.9 113 56-175 27-146 (247)
148 PRK01581 speE spermidine synth 99.2 2.6E-10 5.6E-15 102.0 13.0 107 68-174 149-267 (374)
149 KOG2904 Predicted methyltransf 99.2 7.7E-10 1.7E-14 93.9 14.2 119 60-178 139-288 (328)
150 TIGR02085 meth_trns_rumB 23S r 99.2 4E-10 8.7E-15 103.1 13.6 110 59-175 223-334 (374)
151 COG2263 Predicted RNA methylas 99.1 8.1E-10 1.8E-14 89.2 11.8 82 62-147 38-119 (198)
152 PRK03612 spermidine synthase; 99.1 1.7E-10 3.7E-15 109.8 9.2 108 68-175 296-415 (521)
153 COG0220 Predicted S-adenosylme 99.1 4.5E-10 9.7E-15 95.1 9.8 105 70-175 49-164 (227)
154 PF10294 Methyltransf_16: Puta 99.1 1.3E-09 2.7E-14 89.2 12.1 109 66-177 42-158 (173)
155 PLN02672 methionine S-methyltr 99.1 7.2E-10 1.6E-14 111.7 12.8 110 70-179 119-282 (1082)
156 TIGR00479 rumA 23S rRNA (uraci 99.1 1.2E-09 2.6E-14 102.0 13.4 114 55-175 278-396 (431)
157 KOG1499 Protein arginine N-met 99.1 8.5E-10 1.8E-14 97.1 10.9 106 66-172 57-164 (346)
158 PF05185 PRMT5: PRMT5 arginine 99.1 7.9E-10 1.7E-14 102.8 10.9 103 70-172 187-294 (448)
159 PF01739 CheR: CheR methyltran 99.1 8.3E-10 1.8E-14 91.7 9.9 114 61-174 23-174 (196)
160 TIGR00095 RNA methyltransferas 99.1 3.7E-09 8E-14 87.6 13.7 106 69-177 49-161 (189)
161 PTZ00338 dimethyladenosine tra 99.1 1.3E-09 2.8E-14 96.3 11.3 90 56-147 23-112 (294)
162 PRK11727 23S rRNA mA1618 methy 99.1 2E-09 4.3E-14 95.8 12.2 81 69-149 114-202 (321)
163 PF01170 UPF0020: Putative RNA 99.1 3.2E-09 6.9E-14 87.2 12.3 115 59-173 18-149 (179)
164 COG1041 Predicted DNA modifica 99.1 2.4E-09 5.3E-14 94.7 12.2 115 60-176 188-311 (347)
165 KOG1500 Protein arginine N-met 99.0 2E-09 4.2E-14 93.8 11.0 105 68-173 176-280 (517)
166 KOG2899 Predicted methyltransf 99.0 1.2E-09 2.7E-14 91.1 9.4 106 68-174 57-208 (288)
167 COG1092 Predicted SAM-dependen 99.0 3.1E-09 6.7E-14 96.6 12.4 109 69-178 217-339 (393)
168 PRK14896 ksgA 16S ribosomal RN 99.0 2.2E-09 4.8E-14 93.4 10.9 87 56-147 16-102 (258)
169 KOG3191 Predicted N6-DNA-methy 99.0 9.6E-09 2.1E-13 82.2 12.7 135 38-177 15-170 (209)
170 PRK00274 ksgA 16S ribosomal RN 99.0 2.4E-09 5.2E-14 93.9 10.1 86 57-147 30-116 (272)
171 COG0357 GidB Predicted S-adeno 99.0 1.3E-08 2.8E-13 85.2 13.6 143 8-173 17-166 (215)
172 KOG1663 O-methyltransferase [S 99.0 1.9E-08 4.2E-13 83.7 14.3 154 17-178 23-186 (237)
173 PF05219 DREV: DREV methyltran 99.0 3.9E-09 8.5E-14 89.7 9.7 95 69-176 94-189 (265)
174 TIGR00755 ksgA dimethyladenosi 99.0 1.2E-08 2.6E-13 88.5 13.0 86 56-146 16-104 (253)
175 PLN02823 spermine synthase 99.0 1.1E-08 2.4E-13 91.7 12.7 107 69-175 103-220 (336)
176 PRK10611 chemotaxis methyltran 99.0 2.1E-09 4.6E-14 94.2 7.8 105 70-174 116-261 (287)
177 PRK11933 yebU rRNA (cytosine-C 99.0 1.4E-08 3.1E-13 94.9 13.8 114 66-180 110-247 (470)
178 PRK01544 bifunctional N5-gluta 98.9 6E-09 1.3E-13 98.8 11.4 127 48-175 319-462 (506)
179 PF02475 Met_10: Met-10+ like- 98.9 2E-09 4.4E-14 89.5 7.1 100 67-172 99-199 (200)
180 PF10672 Methyltrans_SAM: S-ad 98.9 6E-09 1.3E-13 91.2 10.3 109 69-177 123-240 (286)
181 COG3963 Phospholipid N-methylt 98.9 1.1E-08 2.4E-13 80.8 10.5 114 58-177 37-158 (194)
182 PF03602 Cons_hypoth95: Conser 98.9 4.2E-09 9E-14 86.7 8.5 109 68-178 41-156 (183)
183 PF02527 GidB: rRNA small subu 98.9 2.3E-08 5E-13 82.2 12.6 128 37-174 14-147 (184)
184 PF05148 Methyltransf_8: Hypot 98.9 4.4E-09 9.5E-14 86.6 7.7 99 58-177 60-160 (219)
185 KOG3045 Predicted RNA methylas 98.9 1E-08 2.2E-13 86.4 10.0 96 59-177 169-266 (325)
186 COG0421 SpeE Spermidine syntha 98.9 1.7E-08 3.6E-13 88.3 11.4 117 56-174 64-189 (282)
187 COG1352 CheR Methylase of chem 98.9 2.2E-08 4.8E-13 86.8 11.7 106 69-174 96-240 (268)
188 KOG1661 Protein-L-isoaspartate 98.9 1.1E-08 2.3E-13 83.8 8.9 111 57-175 68-193 (237)
189 PRK04338 N(2),N(2)-dimethylgua 98.9 1.4E-08 3E-13 92.9 10.8 98 70-174 58-157 (382)
190 TIGR02143 trmA_only tRNA (urac 98.8 4E-08 8.6E-13 89.3 12.4 112 55-176 184-312 (353)
191 KOG2940 Predicted methyltransf 98.8 7.2E-09 1.6E-13 85.9 6.7 103 70-177 73-176 (325)
192 PRK05031 tRNA (uracil-5-)-meth 98.8 5.1E-08 1.1E-12 88.9 12.9 111 56-176 194-321 (362)
193 PF08123 DOT1: Histone methyla 98.8 3.4E-08 7.4E-13 82.6 10.6 122 49-173 22-156 (205)
194 PF12147 Methyltransf_20: Puta 98.8 1.5E-07 3.2E-12 81.2 14.5 106 69-174 135-248 (311)
195 PRK04148 hypothetical protein; 98.8 9.2E-08 2E-12 74.0 11.6 102 61-178 8-112 (134)
196 PF01564 Spermine_synth: Sperm 98.8 2.4E-08 5.2E-13 86.1 9.1 122 53-175 61-191 (246)
197 COG2265 TrmA SAM-dependent met 98.8 7.2E-08 1.6E-12 89.3 12.1 118 52-176 276-397 (432)
198 KOG1331 Predicted methyltransf 98.8 1.5E-08 3.2E-13 86.9 6.4 130 32-179 15-147 (293)
199 COG0742 N6-adenine-specific me 98.8 2.3E-07 5.1E-12 75.6 13.0 117 60-177 32-156 (187)
200 COG0030 KsgA Dimethyladenosine 98.8 6.4E-08 1.4E-12 83.1 10.2 87 56-146 17-105 (259)
201 TIGR00478 tly hemolysin TlyA f 98.8 9E-08 1.9E-12 81.3 10.9 102 55-173 60-169 (228)
202 KOG3420 Predicted RNA methylas 98.7 2.9E-08 6.3E-13 76.6 6.8 90 57-148 36-126 (185)
203 PRK00050 16S rRNA m(4)C1402 me 98.7 4E-08 8.7E-13 86.4 8.5 87 57-146 7-100 (296)
204 KOG0820 Ribosomal RNA adenine 98.7 7.1E-08 1.5E-12 82.0 9.4 89 56-146 45-133 (315)
205 COG2521 Predicted archaeal met 98.7 9.6E-09 2.1E-13 85.4 3.8 112 63-175 128-245 (287)
206 COG2520 Predicted methyltransf 98.7 1.3E-07 2.7E-12 84.5 10.9 113 60-180 181-294 (341)
207 PF09445 Methyltransf_15: RNA 98.7 2.7E-08 5.9E-13 79.7 5.8 73 71-144 1-77 (163)
208 COG0144 Sun tRNA and rRNA cyto 98.7 6.8E-07 1.5E-11 81.2 14.4 119 61-180 148-293 (355)
209 KOG1269 SAM-dependent methyltr 98.7 7E-08 1.5E-12 87.2 7.8 112 66-179 107-219 (364)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.6 5.2E-07 1.1E-11 89.1 14.3 118 59-176 179-348 (702)
211 PRK00536 speE spermidine synth 98.6 4.1E-07 8.9E-12 78.7 11.9 98 68-175 71-171 (262)
212 PF09243 Rsm22: Mitochondrial 98.6 5.7E-07 1.2E-11 78.9 12.8 124 55-180 19-144 (274)
213 TIGR03439 methyl_EasF probable 98.6 9.4E-07 2E-11 78.7 13.8 114 59-175 68-197 (319)
214 PF01728 FtsJ: FtsJ-like methy 98.6 6.7E-08 1.4E-12 79.5 5.9 110 56-177 7-141 (181)
215 KOG2915 tRNA(1-methyladenosine 98.6 6.8E-07 1.5E-11 76.1 11.8 109 58-173 94-207 (314)
216 PF13679 Methyltransf_32: Meth 98.6 8E-07 1.7E-11 70.1 11.0 84 67-150 23-113 (141)
217 KOG3178 Hydroxyindole-O-methyl 98.6 7.7E-07 1.7E-11 78.7 11.8 102 71-180 179-280 (342)
218 PF04672 Methyltransf_19: S-ad 98.6 5.8E-07 1.3E-11 77.3 10.7 128 51-179 49-194 (267)
219 COG0116 Predicted N6-adenine-s 98.6 1.5E-06 3.1E-11 78.3 13.7 117 58-174 180-343 (381)
220 PF05958 tRNA_U5-meth_tr: tRNA 98.6 5.1E-07 1.1E-11 82.0 10.4 95 52-149 180-291 (352)
221 TIGR00308 TRM1 tRNA(guanine-26 98.5 1.1E-06 2.3E-11 80.2 11.6 98 70-174 45-146 (374)
222 PF07942 N2227: N2227-like pro 98.5 2.4E-06 5.2E-11 74.1 12.8 102 69-173 56-200 (270)
223 PF03059 NAS: Nicotianamine sy 98.4 2.9E-06 6.3E-11 73.8 11.9 122 52-174 100-229 (276)
224 COG4076 Predicted RNA methylas 98.4 4.3E-07 9.4E-12 73.2 6.2 101 71-174 34-134 (252)
225 PF03141 Methyltransf_29: Puta 98.4 1.1E-07 2.4E-12 87.6 3.3 98 71-176 119-220 (506)
226 COG0293 FtsJ 23S rRNA methylas 98.4 3.1E-06 6.8E-11 70.1 11.3 114 55-180 30-164 (205)
227 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.8E-06 3.8E-11 77.2 9.9 116 59-174 36-182 (311)
228 KOG1709 Guanidinoacetate methy 98.4 7.4E-06 1.6E-10 67.6 11.6 120 53-176 85-207 (271)
229 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 3.3E-06 7.1E-11 74.4 10.3 118 61-179 77-223 (283)
230 COG0500 SmtA SAM-dependent met 98.3 1.1E-05 2.4E-10 62.9 12.0 103 73-180 52-160 (257)
231 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 4.8E-06 1E-10 71.8 10.3 110 68-177 55-201 (256)
232 PF13578 Methyltransf_24: Meth 98.3 2.8E-07 6.1E-12 68.9 2.1 98 74-175 1-105 (106)
233 PF04816 DUF633: Family of unk 98.3 8.4E-06 1.8E-10 68.2 10.8 100 73-176 1-102 (205)
234 PF00398 RrnaAD: Ribosomal RNA 98.3 4.4E-06 9.6E-11 72.9 9.1 99 56-163 17-119 (262)
235 PRK10742 putative methyltransf 98.2 6.9E-06 1.5E-10 70.0 8.7 90 59-149 76-177 (250)
236 PRK11760 putative 23S rRNA C24 98.2 1.1E-05 2.4E-10 71.8 9.9 98 56-168 190-296 (357)
237 COG3897 Predicted methyltransf 98.2 6.3E-06 1.4E-10 67.1 7.7 108 59-173 69-176 (218)
238 PF01269 Fibrillarin: Fibrilla 98.2 2.6E-05 5.7E-10 65.1 10.7 105 63-174 67-177 (229)
239 KOG2730 Methylase [General fun 98.2 6.9E-07 1.5E-11 73.8 1.3 76 69-145 94-174 (263)
240 KOG3987 Uncharacterized conser 98.2 5.1E-07 1.1E-11 73.9 0.6 103 69-185 112-216 (288)
241 TIGR02987 met_A_Alw26 type II 98.1 2.6E-05 5.5E-10 74.8 12.0 78 69-147 31-123 (524)
242 PF05971 Methyltransf_10: Prot 98.1 2.7E-05 6E-10 68.4 10.1 80 70-149 103-190 (299)
243 TIGR01444 fkbM_fam methyltrans 98.1 1.5E-05 3.3E-10 62.6 7.6 59 72-131 1-60 (143)
244 TIGR00006 S-adenosyl-methyltra 98.0 3.6E-05 7.8E-10 68.0 9.9 89 57-147 8-103 (305)
245 KOG2187 tRNA uracil-5-methyltr 98.0 8.9E-06 1.9E-10 75.2 6.0 73 57-131 371-443 (534)
246 COG4262 Predicted spermidine s 98.0 5.8E-05 1.3E-09 67.1 9.8 110 68-177 288-409 (508)
247 COG4798 Predicted methyltransf 97.9 3E-05 6.6E-10 63.1 6.9 118 60-178 39-169 (238)
248 PF11968 DUF3321: Putative met 97.9 2.8E-05 6E-10 64.7 6.8 85 71-173 53-147 (219)
249 KOG1122 tRNA and rRNA cytosine 97.9 0.00014 3E-09 65.9 11.5 116 64-180 236-376 (460)
250 KOG3201 Uncharacterized conser 97.9 1.3E-05 2.9E-10 63.2 3.9 112 60-174 20-139 (201)
251 KOG4058 Uncharacterized conser 97.9 0.00015 3.2E-09 56.5 9.4 121 54-180 57-177 (199)
252 PF06962 rRNA_methylase: Putat 97.9 4.4E-05 9.6E-10 59.5 6.6 85 94-178 1-95 (140)
253 COG2384 Predicted SAM-dependen 97.9 0.00032 6.9E-09 58.5 11.7 110 58-173 7-118 (226)
254 PF07091 FmrO: Ribosomal RNA m 97.8 0.00017 3.7E-09 61.4 10.0 81 67-149 103-184 (251)
255 KOG3115 Methyltransferase-like 97.8 9.8E-05 2.1E-09 60.6 7.5 107 69-175 60-183 (249)
256 COG1064 AdhP Zn-dependent alco 97.8 0.00041 8.8E-09 62.1 11.7 100 62-177 159-261 (339)
257 COG1189 Predicted rRNA methyla 97.7 0.00027 5.9E-09 59.6 9.2 107 56-173 65-176 (245)
258 COG1889 NOP1 Fibrillarin-like 97.7 0.00047 1E-08 56.6 10.3 104 64-174 71-179 (231)
259 PF01861 DUF43: Protein of unk 97.6 0.0032 7E-08 53.5 14.3 113 55-173 31-147 (243)
260 KOG2352 Predicted spermine/spe 97.6 0.00079 1.7E-08 62.4 11.3 104 72-177 51-163 (482)
261 PF04445 SAM_MT: Putative SAM- 97.5 0.00027 5.9E-09 60.0 7.1 90 59-149 63-164 (234)
262 KOG4589 Cell division protein 97.5 0.0011 2.5E-08 53.7 9.2 102 67-180 67-189 (232)
263 KOG2798 Putative trehalase [Ca 97.4 0.00076 1.6E-08 59.0 8.2 101 70-173 151-294 (369)
264 KOG1501 Arginine N-methyltrans 97.3 0.00038 8.3E-09 63.3 5.8 72 71-142 68-141 (636)
265 PF04989 CmcI: Cephalosporin h 97.3 0.00068 1.5E-08 56.4 6.6 114 56-177 22-149 (206)
266 COG5459 Predicted rRNA methyla 97.3 0.0011 2.3E-08 59.0 7.4 113 69-181 113-231 (484)
267 PF01795 Methyltransf_5: MraW 97.1 0.00057 1.2E-08 60.5 4.2 88 57-146 8-103 (310)
268 PRK09424 pntA NAD(P) transhydr 97.1 0.0046 1E-07 58.7 10.5 100 67-176 162-286 (509)
269 COG0275 Predicted S-adenosylme 97.1 0.0044 9.6E-08 54.2 9.3 89 56-146 10-106 (314)
270 COG3129 Predicted SAM-dependen 97.1 0.0037 8E-08 52.5 8.3 97 53-149 59-166 (292)
271 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0019 4.2E-08 59.1 7.2 100 69-174 49-153 (377)
272 KOG2793 Putative N2,N2-dimethy 97.0 0.007 1.5E-07 51.9 10.0 104 69-175 86-199 (248)
273 COG0286 HsdM Type I restrictio 97.0 0.011 2.4E-07 56.2 12.2 115 59-173 176-324 (489)
274 PF03141 Methyltransf_29: Puta 96.8 0.0018 3.8E-08 60.4 5.2 99 71-176 367-468 (506)
275 KOG1596 Fibrillarin and relate 96.8 0.0034 7.4E-08 53.0 6.4 106 63-175 150-261 (317)
276 TIGR00027 mthyl_TIGR00027 meth 96.8 0.031 6.7E-07 48.7 12.5 125 53-178 65-200 (260)
277 KOG2198 tRNA cytosine-5-methyl 96.8 0.019 4.1E-07 51.6 10.9 115 65-180 151-301 (375)
278 PRK09880 L-idonate 5-dehydroge 96.8 0.0099 2.1E-07 53.7 9.5 103 62-176 162-267 (343)
279 COG4627 Uncharacterized protei 96.7 0.0038 8.1E-08 49.2 5.1 43 133-175 44-86 (185)
280 KOG3924 Putative protein methy 96.6 0.013 2.8E-07 53.0 8.9 138 39-179 162-312 (419)
281 PF03492 Methyltransf_7: SAM d 96.6 0.02 4.3E-07 51.7 10.1 123 58-180 5-188 (334)
282 KOG1562 Spermidine synthase [A 96.6 0.0078 1.7E-07 52.4 6.8 108 67-174 119-235 (337)
283 COG1063 Tdh Threonine dehydrog 96.5 0.04 8.7E-07 50.1 11.8 99 67-180 166-274 (350)
284 PF11599 AviRa: RRNA methyltra 96.5 0.035 7.6E-07 46.3 10.1 115 59-173 41-212 (246)
285 KOG0024 Sorbitol dehydrogenase 96.5 0.0085 1.8E-07 52.9 6.6 110 59-182 159-280 (354)
286 PF06859 Bin3: Bicoid-interact 96.3 0.0027 5.9E-08 47.1 2.4 39 136-174 1-43 (110)
287 PLN02668 indole-3-acetate carb 96.3 0.077 1.7E-06 48.6 12.3 48 133-180 159-242 (386)
288 PHA01634 hypothetical protein 96.3 0.033 7.1E-07 42.5 8.0 79 60-143 20-99 (156)
289 COG1867 TRM1 N2,N2-dimethylgua 96.2 0.06 1.3E-06 48.5 10.7 98 70-174 53-153 (380)
290 KOG1099 SAM-dependent methyltr 96.2 0.011 2.5E-07 49.6 5.7 95 70-176 42-164 (294)
291 KOG0822 Protein kinase inhibit 96.2 0.03 6.4E-07 52.6 8.9 102 70-173 368-476 (649)
292 cd08283 FDH_like_1 Glutathione 96.1 0.077 1.7E-06 48.8 11.6 109 63-175 178-306 (386)
293 PF03269 DUF268: Caenorhabditi 96.0 0.043 9.3E-07 43.7 7.6 103 70-180 2-116 (177)
294 KOG2671 Putative RNA methylase 95.9 0.007 1.5E-07 53.8 3.3 114 62-176 201-355 (421)
295 cd08254 hydroxyacyl_CoA_DH 6-h 95.9 0.12 2.5E-06 46.2 11.4 97 64-175 160-263 (338)
296 KOG1227 Putative methyltransfe 95.9 0.0031 6.6E-08 55.0 0.9 103 69-177 194-299 (351)
297 PRK11524 putative methyltransf 95.9 0.04 8.8E-07 48.6 8.0 58 55-114 195-252 (284)
298 TIGR02822 adh_fam_2 zinc-bindi 95.9 0.12 2.5E-06 46.5 11.2 96 63-176 159-255 (329)
299 KOG2920 Predicted methyltransf 95.8 0.0086 1.9E-07 52.0 3.5 104 68-173 115-232 (282)
300 cd08230 glucose_DH Glucose deh 95.8 0.07 1.5E-06 48.4 9.7 98 66-176 169-270 (355)
301 cd08239 THR_DH_like L-threonin 95.8 0.028 6.1E-07 50.5 6.9 99 62-175 156-262 (339)
302 COG4301 Uncharacterized conser 95.8 0.16 3.4E-06 43.4 10.6 105 69-175 78-193 (321)
303 TIGR00561 pntA NAD(P) transhyd 95.7 0.044 9.5E-07 52.1 8.1 96 68-173 162-282 (511)
304 KOG0023 Alcohol dehydrogenase, 95.7 0.063 1.4E-06 47.5 8.3 136 62-213 174-314 (360)
305 COG1565 Uncharacterized conser 95.7 0.073 1.6E-06 47.9 8.7 60 56-115 64-132 (370)
306 cd08281 liver_ADH_like1 Zinc-d 95.7 0.11 2.3E-06 47.6 10.3 100 61-175 183-290 (371)
307 PF02636 Methyltransf_28: Puta 95.6 0.044 9.5E-07 47.4 7.2 89 58-150 6-109 (252)
308 KOG2651 rRNA adenine N-6-methy 95.6 0.049 1.1E-06 49.2 7.4 58 53-110 136-194 (476)
309 TIGR03366 HpnZ_proposed putati 95.6 0.04 8.6E-07 48.3 6.9 100 62-176 113-219 (280)
310 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.03 6.4E-07 42.8 5.4 85 79-178 1-92 (130)
311 COG3510 CmcI Cephalosporin hyd 95.6 0.13 2.9E-06 42.1 9.1 113 57-180 60-185 (237)
312 PRK13699 putative methylase; P 95.5 0.08 1.7E-06 45.1 8.1 57 57-115 152-208 (227)
313 cd00315 Cyt_C5_DNA_methylase C 95.5 0.042 9.2E-07 48.2 6.6 71 72-149 2-75 (275)
314 PF01555 N6_N4_Mtase: DNA meth 95.4 0.054 1.2E-06 45.5 7.0 54 55-110 178-231 (231)
315 KOG1253 tRNA methyltransferase 95.4 0.011 2.4E-07 55.0 2.7 101 68-174 108-215 (525)
316 PF05711 TylF: Macrocin-O-meth 95.4 0.11 2.5E-06 44.7 8.7 126 49-178 53-215 (248)
317 TIGR03451 mycoS_dep_FDH mycoth 95.4 0.034 7.4E-07 50.5 5.9 99 62-175 169-276 (358)
318 cd08237 ribitol-5-phosphate_DH 95.3 0.15 3.3E-06 46.0 9.7 96 65-176 159-257 (341)
319 COG3315 O-Methyltransferase in 95.2 0.19 4.1E-06 44.6 9.7 123 53-176 76-210 (297)
320 cd00401 AdoHcyase S-adenosyl-L 95.1 0.18 3.9E-06 46.8 9.6 99 57-175 188-289 (413)
321 cd05188 MDR Medium chain reduc 95.0 0.11 2.3E-06 44.6 7.5 94 67-175 132-232 (271)
322 PF07757 AdoMet_MTase: Predict 94.8 0.027 5.8E-07 41.7 2.7 33 69-102 58-90 (112)
323 COG0604 Qor NADPH:quinone redu 94.7 0.27 5.9E-06 44.3 9.6 108 57-177 130-243 (326)
324 PLN02740 Alcohol dehydrogenase 94.7 0.22 4.7E-06 45.8 9.2 98 63-175 192-300 (381)
325 COG0686 Ald Alanine dehydrogen 94.6 0.084 1.8E-06 46.6 5.8 97 70-173 168-266 (371)
326 KOG2078 tRNA modification enzy 94.6 0.019 4.2E-07 52.4 1.9 64 67-131 247-311 (495)
327 PF07279 DUF1442: Protein of u 94.5 0.58 1.2E-05 39.2 10.3 101 68-175 40-148 (218)
328 PLN03154 putative allyl alcoho 94.5 0.25 5.5E-06 44.7 9.1 97 63-174 152-257 (348)
329 TIGR03201 dearomat_had 6-hydro 94.3 0.37 8.1E-06 43.5 9.8 48 63-110 160-208 (349)
330 PRK10309 galactitol-1-phosphat 94.3 0.15 3.3E-06 45.9 7.1 98 63-175 154-260 (347)
331 TIGR01202 bchC 2-desacetyl-2-h 94.2 0.22 4.8E-06 44.3 7.8 88 68-176 143-232 (308)
332 cd08232 idonate-5-DH L-idonate 94.1 0.38 8.3E-06 43.0 9.4 96 64-174 160-261 (339)
333 COG1568 Predicted methyltransf 94.0 0.48 1E-05 41.2 9.1 102 69-175 152-260 (354)
334 cd08238 sorbose_phosphate_red 94.0 1.2 2.6E-05 41.3 12.8 101 64-174 170-287 (410)
335 cd08261 Zn_ADH7 Alcohol dehydr 93.9 0.16 3.5E-06 45.5 6.6 100 63-174 153-257 (337)
336 PLN02827 Alcohol dehydrogenase 93.9 0.32 6.8E-06 44.7 8.5 97 63-174 187-294 (378)
337 TIGR02825 B4_12hDH leukotriene 93.9 0.38 8.3E-06 42.8 8.8 98 61-174 130-236 (325)
338 TIGR02818 adh_III_F_hyde S-(hy 93.8 0.44 9.5E-06 43.5 9.2 103 62-176 178-288 (368)
339 cd08255 2-desacetyl-2-hydroxye 93.8 0.7 1.5E-05 40.0 10.2 98 63-175 91-190 (277)
340 COG1748 LYS9 Saccharopine dehy 93.7 2.6 5.7E-05 38.8 13.9 163 71-279 2-170 (389)
341 PRK05476 S-adenosyl-L-homocyst 93.7 0.43 9.3E-06 44.5 8.9 87 69-175 211-299 (425)
342 PF02737 3HCDH_N: 3-hydroxyacy 93.6 0.64 1.4E-05 38.1 9.0 100 72-179 1-118 (180)
343 PF11899 DUF3419: Protein of u 93.6 0.12 2.6E-06 47.5 5.0 64 115-179 272-338 (380)
344 cd08242 MDR_like Medium chain 93.5 1.4 3E-05 39.0 11.7 96 61-173 147-243 (319)
345 PF10354 DUF2431: Domain of un 93.4 0.7 1.5E-05 37.3 8.7 101 76-177 3-127 (166)
346 COG2933 Predicted SAM-dependen 93.4 0.35 7.6E-06 41.7 7.1 87 65-166 207-294 (358)
347 PF02254 TrkA_N: TrkA-N domain 93.4 0.54 1.2E-05 35.0 7.7 85 78-175 4-96 (116)
348 cd08245 CAD Cinnamyl alcohol d 93.3 1.5 3.2E-05 39.0 11.7 98 63-175 156-256 (330)
349 cd08294 leukotriene_B4_DH_like 93.3 1 2.3E-05 39.9 10.6 97 62-174 136-240 (329)
350 cd08300 alcohol_DH_class_III c 93.2 0.57 1.2E-05 42.7 9.0 100 62-176 179-289 (368)
351 cd08233 butanediol_DH_like (2R 93.2 0.27 5.9E-06 44.3 6.7 101 63-175 166-272 (351)
352 cd08285 NADP_ADH NADP(H)-depen 93.1 0.23 5E-06 44.8 6.2 98 63-175 160-266 (351)
353 cd08236 sugar_DH NAD(P)-depend 93.1 0.3 6.6E-06 43.8 6.9 97 64-175 154-258 (343)
354 COG1062 AdhC Zn-dependent alco 92.9 0.99 2.2E-05 40.5 9.5 107 59-180 175-290 (366)
355 cd08277 liver_alcohol_DH_like 92.8 0.75 1.6E-05 41.9 9.1 103 62-176 177-287 (365)
356 KOG2912 Predicted DNA methylas 92.8 0.3 6.4E-06 43.3 6.0 95 52-146 83-188 (419)
357 cd05285 sorbitol_DH Sorbitol d 92.8 0.4 8.7E-06 43.1 7.2 98 63-175 156-265 (343)
358 PRK01747 mnmC bifunctional tRN 92.7 0.42 9.2E-06 47.3 7.8 105 69-173 57-204 (662)
359 TIGR00936 ahcY adenosylhomocys 92.5 0.96 2.1E-05 42.0 9.4 98 59-176 183-283 (406)
360 PRK11524 putative methyltransf 92.4 0.15 3.3E-06 44.9 3.8 55 120-174 8-79 (284)
361 cd08234 threonine_DH_like L-th 92.4 1.7 3.7E-05 38.6 10.8 98 63-175 153-257 (334)
362 cd05278 FDH_like Formaldehyde 92.3 0.3 6.6E-06 43.7 5.9 96 64-174 162-266 (347)
363 cd08295 double_bond_reductase_ 92.1 1.1 2.5E-05 40.1 9.3 97 63-174 145-250 (338)
364 PLN02586 probable cinnamyl alc 92.0 0.82 1.8E-05 41.6 8.3 95 67-175 181-278 (360)
365 PF11899 DUF3419: Protein of u 92.0 0.53 1.1E-05 43.3 6.9 51 62-113 28-78 (380)
366 cd08301 alcohol_DH_plants Plan 91.9 1.7 3.6E-05 39.6 10.2 101 61-176 179-290 (369)
367 cd08293 PTGR2 Prostaglandin re 91.9 2.1 4.6E-05 38.3 10.7 97 63-174 146-253 (345)
368 PF03514 GRAS: GRAS domain fam 91.8 1.8 4E-05 39.7 10.3 116 57-175 98-244 (374)
369 cd08279 Zn_ADH_class_III Class 91.8 0.5 1.1E-05 42.9 6.7 100 61-175 174-282 (363)
370 cd08231 MDR_TM0436_like Hypoth 91.8 1.3 2.8E-05 40.1 9.3 101 63-175 170-280 (361)
371 TIGR02819 fdhA_non_GSH formald 91.5 0.61 1.3E-05 43.1 6.9 107 63-176 179-300 (393)
372 cd08298 CAD2 Cinnamyl alcohol 91.4 4.7 0.0001 35.7 12.4 95 63-175 161-256 (329)
373 PF11312 DUF3115: Protein of u 91.1 2 4.3E-05 38.2 9.3 107 71-177 88-244 (315)
374 PF04072 LCM: Leucine carboxyl 91.1 0.75 1.6E-05 37.7 6.4 90 71-161 80-182 (183)
375 cd08278 benzyl_alcohol_DH Benz 91.1 0.48 1.1E-05 43.1 5.8 98 63-175 180-285 (365)
376 KOG2352 Predicted spermine/spe 91.0 0.32 6.9E-06 45.5 4.4 110 69-179 295-420 (482)
377 cd08296 CAD_like Cinnamyl alco 91.0 3.1 6.7E-05 37.2 10.8 98 63-175 157-259 (333)
378 TIGR00518 alaDH alanine dehydr 90.9 0.42 9.1E-06 43.9 5.1 98 69-173 166-265 (370)
379 PLN02494 adenosylhomocysteinas 90.8 1.3 2.8E-05 41.8 8.2 100 58-176 241-342 (477)
380 PLN02514 cinnamyl-alcohol dehy 90.7 2.2 4.9E-05 38.7 9.8 95 67-175 178-275 (357)
381 PF00145 DNA_methylase: C-5 cy 90.6 0.71 1.5E-05 41.0 6.3 70 72-149 2-74 (335)
382 PTZ00357 methyltransferase; Pr 90.6 1.2 2.6E-05 43.7 7.8 97 72-170 703-830 (1072)
383 cd08286 FDH_like_ADH2 formalde 90.4 0.97 2.1E-05 40.6 7.1 100 63-174 160-265 (345)
384 PRK07066 3-hydroxybutyryl-CoA 90.0 2.2 4.9E-05 38.3 8.9 99 71-176 8-120 (321)
385 cd05281 TDH Threonine dehydrog 90.0 1.1 2.3E-05 40.2 7.0 96 67-174 161-261 (341)
386 PF12692 Methyltransf_17: S-ad 90.0 1.1 2.4E-05 35.3 5.9 112 53-173 13-132 (160)
387 KOG0821 Predicted ribosomal RN 89.9 0.91 2E-05 38.2 5.7 73 57-131 38-110 (326)
388 PF05206 TRM13: Methyltransfer 89.8 1.5 3.2E-05 38.2 7.3 75 57-132 6-86 (259)
389 PRK07819 3-hydroxybutyryl-CoA 89.7 2.6 5.6E-05 37.2 8.9 101 71-179 6-125 (286)
390 PLN02178 cinnamyl-alcohol dehy 89.5 1.9 4.1E-05 39.6 8.2 93 68-175 177-273 (375)
391 cd05279 Zn_ADH1 Liver alcohol 89.4 2.3 4.9E-05 38.7 8.7 101 62-175 176-285 (365)
392 KOG2539 Mitochondrial/chloropl 89.2 1.6 3.4E-05 40.9 7.3 109 69-179 200-319 (491)
393 COG5379 BtaA S-adenosylmethion 88.9 1.3 2.7E-05 39.0 6.1 47 67-114 61-107 (414)
394 cd08263 Zn_ADH10 Alcohol dehyd 88.9 1.4 2.9E-05 40.1 6.9 94 66-174 184-286 (367)
395 PRK08293 3-hydroxybutyryl-CoA 88.9 4.2 9.1E-05 35.8 9.7 97 71-174 4-119 (287)
396 cd05283 CAD1 Cinnamyl alcohol 88.8 4.3 9.2E-05 36.3 10.0 98 63-175 163-263 (337)
397 cd08265 Zn_ADH3 Alcohol dehydr 88.8 7.1 0.00015 35.7 11.6 99 65-174 199-306 (384)
398 cd08287 FDH_like_ADH3 formalde 88.8 1.4 3E-05 39.5 6.8 97 64-175 163-268 (345)
399 PRK10083 putative oxidoreducta 88.8 2.6 5.6E-05 37.6 8.6 103 61-175 152-259 (339)
400 cd08235 iditol_2_DH_like L-idi 88.7 1.3 2.7E-05 39.7 6.4 98 63-175 159-265 (343)
401 TIGR00675 dcm DNA-methyltransf 88.6 0.97 2.1E-05 40.5 5.5 69 73-149 1-72 (315)
402 COG1255 Uncharacterized protei 88.5 3.6 7.8E-05 31.0 7.4 88 70-177 14-104 (129)
403 PRK08306 dipicolinate synthase 88.1 5.7 0.00012 35.2 10.1 87 69-173 151-239 (296)
404 PRK09260 3-hydroxybutyryl-CoA 88.1 4.4 9.6E-05 35.6 9.4 99 72-177 3-119 (288)
405 cd08241 QOR1 Quinone oxidoredu 88.0 2.1 4.6E-05 37.3 7.4 96 64-175 134-238 (323)
406 COG0287 TyrA Prephenate dehydr 88.0 3.8 8.2E-05 36.1 8.7 88 71-171 4-94 (279)
407 TIGR00692 tdh L-threonine 3-de 87.9 1.2 2.7E-05 39.9 5.9 97 67-175 159-261 (340)
408 cd05284 arabinose_DH_like D-ar 87.9 2.1 4.6E-05 38.2 7.4 95 66-175 164-266 (340)
409 PF05050 Methyltransf_21: Meth 87.8 1.7 3.6E-05 34.3 6.0 54 75-128 1-61 (167)
410 PRK03659 glutathione-regulated 87.7 2.6 5.6E-05 41.3 8.3 92 71-175 401-498 (601)
411 PF10237 N6-adenineMlase: Prob 87.5 13 0.00028 29.9 10.8 95 69-176 25-124 (162)
412 PRK05786 fabG 3-ketoacyl-(acyl 87.5 14 0.00029 30.9 11.8 103 69-175 4-135 (238)
413 PRK06035 3-hydroxyacyl-CoA deh 87.4 7.6 0.00017 34.2 10.5 94 71-172 4-118 (291)
414 cd08284 FDH_like_2 Glutathione 87.3 9.1 0.0002 34.1 11.2 95 64-174 162-265 (344)
415 PRK13699 putative methylase; P 87.3 0.65 1.4E-05 39.5 3.5 53 121-173 2-70 (227)
416 PRK05808 3-hydroxybutyryl-CoA 87.2 9.3 0.0002 33.4 10.9 94 72-173 5-116 (282)
417 PRK03562 glutathione-regulated 87.2 4.8 0.0001 39.7 9.8 92 71-175 401-498 (621)
418 cd08260 Zn_ADH6 Alcohol dehydr 87.0 4.1 8.9E-05 36.4 8.7 97 63-174 159-263 (345)
419 PTZ00075 Adenosylhomocysteinas 87.0 2.1 4.5E-05 40.5 6.8 88 68-175 252-341 (476)
420 cd08269 Zn_ADH9 Alcohol dehydr 87.0 2.4 5.2E-05 37.1 7.1 97 64-175 124-229 (312)
421 PRK07530 3-hydroxybutyryl-CoA 86.9 11 0.00024 33.1 11.2 99 71-177 5-121 (292)
422 PRK07417 arogenate dehydrogena 86.8 5.1 0.00011 35.1 9.0 84 72-171 2-87 (279)
423 cd08240 6_hydroxyhexanoate_dh_ 86.5 12 0.00025 33.6 11.4 92 68-174 174-273 (350)
424 PRK07502 cyclohexadienyl dehyd 86.3 5.7 0.00012 35.3 9.1 87 71-172 7-97 (307)
425 COG4017 Uncharacterized protei 86.3 1.8 3.9E-05 35.6 5.2 98 59-178 34-132 (254)
426 PRK07533 enoyl-(acyl carrier p 86.2 15 0.00032 31.4 11.5 103 69-175 9-148 (258)
427 KOG1201 Hydroxysteroid 17-beta 86.2 6.9 0.00015 34.6 9.1 74 69-146 37-124 (300)
428 KOG0022 Alcohol dehydrogenase, 86.1 2.2 4.7E-05 38.0 6.0 104 59-177 182-296 (375)
429 cd08266 Zn_ADH_like1 Alcohol d 85.5 4 8.6E-05 36.0 7.8 98 63-175 160-265 (342)
430 cd08291 ETR_like_1 2-enoyl thi 85.4 1.5 3.3E-05 38.9 5.0 91 69-175 142-242 (324)
431 PRK05396 tdh L-threonine 3-deh 85.1 2.2 4.7E-05 38.2 5.9 94 68-176 162-264 (341)
432 PRK10669 putative cation:proto 85.0 4 8.7E-05 39.6 8.0 91 71-174 418-514 (558)
433 cd08274 MDR9 Medium chain dehy 84.9 12 0.00026 33.3 10.7 95 63-174 171-272 (350)
434 KOG1098 Putative SAM-dependent 84.9 1.5 3.3E-05 42.3 4.8 95 67-173 42-156 (780)
435 PF03686 UPF0146: Uncharacteri 84.9 1.3 2.7E-05 34.0 3.5 89 70-178 14-105 (127)
436 PRK12939 short chain dehydroge 84.8 15 0.00033 30.8 10.8 74 69-145 6-93 (250)
437 COG0569 TrkA K+ transport syst 84.6 4.9 0.00011 34.1 7.5 65 72-143 2-73 (225)
438 PRK09496 trkA potassium transp 84.4 8.6 0.00019 36.0 9.9 69 69-143 230-304 (453)
439 COG0270 Dcm Site-specific DNA 84.4 3.6 7.7E-05 37.1 6.9 74 70-149 3-80 (328)
440 TIGR02441 fa_ox_alpha_mit fatt 84.2 11 0.00023 38.1 10.7 99 71-177 336-452 (737)
441 PRK15001 SAM-dependent 23S rib 84.1 14 0.0003 34.1 10.6 96 72-176 47-143 (378)
442 cd08243 quinone_oxidoreductase 83.9 17 0.00037 31.6 11.1 93 65-174 138-237 (320)
443 PRK06522 2-dehydropantoate 2-r 83.8 13 0.00029 32.5 10.3 92 72-173 2-98 (304)
444 KOG2782 Putative SAM dependent 83.6 0.7 1.5E-05 38.8 1.8 92 57-149 31-131 (303)
445 PRK10458 DNA cytosine methylas 83.5 8.4 0.00018 36.5 9.2 98 49-149 64-182 (467)
446 PLN03209 translocon at the inn 83.5 6.7 0.00015 38.1 8.6 81 64-145 74-168 (576)
447 PRK07814 short chain dehydroge 83.5 14 0.00031 31.5 10.2 74 69-145 9-96 (263)
448 PRK08213 gluconate 5-dehydroge 83.4 8.3 0.00018 32.9 8.6 74 69-145 11-98 (259)
449 PF02153 PDH: Prephenate dehyd 83.4 4.7 0.0001 34.9 7.0 73 84-171 2-75 (258)
450 TIGR02437 FadB fatty oxidation 83.4 8.5 0.00018 38.6 9.7 99 71-177 314-430 (714)
451 PLN02702 L-idonate 5-dehydroge 83.1 20 0.00044 32.3 11.4 101 63-175 175-285 (364)
452 PF02826 2-Hacid_dh_C: D-isome 83.1 2 4.4E-05 34.9 4.4 90 69-173 35-125 (178)
453 cd05286 QOR2 Quinone oxidoredu 83.1 2.8 6.2E-05 36.4 5.7 96 64-175 131-235 (320)
454 cd08270 MDR4 Medium chain dehy 82.8 15 0.00032 31.9 10.2 94 64-175 127-222 (305)
455 PRK05708 2-dehydropantoate 2-r 82.7 11 0.00025 33.4 9.4 95 71-174 3-103 (305)
456 PRK11154 fadJ multifunctional 82.7 12 0.00025 37.6 10.3 100 71-177 310-427 (708)
457 cd08282 PFDH_like Pseudomonas 82.7 6.1 0.00013 36.0 7.8 107 63-175 170-285 (375)
458 COG0863 DNA modification methy 82.2 7.2 0.00016 34.2 7.9 58 56-115 210-267 (302)
459 KOG1197 Predicted quinone oxid 82.0 5.5 0.00012 34.5 6.6 100 62-174 139-244 (336)
460 cd08267 MDR1 Medium chain dehy 82.0 30 0.00066 30.0 11.9 97 67-175 141-240 (319)
461 PLN02545 3-hydroxybutyryl-CoA 81.9 30 0.00065 30.4 11.7 95 71-173 5-117 (295)
462 PRK11730 fadB multifunctional 81.6 13 0.00027 37.5 10.1 99 71-177 314-430 (715)
463 PRK09422 ethanol-active dehydr 81.5 19 0.00042 31.9 10.6 98 63-175 156-261 (338)
464 cd08297 CAD3 Cinnamyl alcohol 81.5 4.5 9.8E-05 36.1 6.5 95 65-175 161-265 (341)
465 PLN02989 cinnamyl-alcohol dehy 81.4 7.7 0.00017 34.4 7.9 76 69-145 4-86 (325)
466 cd05288 PGDH Prostaglandin deh 81.3 28 0.0006 30.7 11.5 95 65-174 141-243 (329)
467 PRK09291 short chain dehydroge 81.1 13 0.00028 31.5 9.0 72 71-145 3-82 (257)
468 PF02558 ApbA: Ketopantoate re 80.9 15 0.00032 28.5 8.6 87 73-174 1-100 (151)
469 TIGR00497 hsdM type I restrict 80.7 11 0.00024 36.1 9.1 105 69-173 217-353 (501)
470 KOG2360 Proliferation-associat 80.6 4.2 9.2E-05 37.1 5.7 85 61-146 205-294 (413)
471 cd08289 MDR_yhfp_like Yhfp put 80.5 8 0.00017 34.1 7.7 90 69-175 146-243 (326)
472 cd08262 Zn_ADH8 Alcohol dehydr 80.1 25 0.00053 31.3 10.8 98 63-175 155-264 (341)
473 cd08276 MDR7 Medium chain dehy 80.0 8 0.00017 34.1 7.5 95 65-175 156-259 (336)
474 PRK09496 trkA potassium transp 80.0 26 0.00055 32.8 11.2 89 72-174 2-98 (453)
475 PRK06130 3-hydroxybutyryl-CoA 79.9 22 0.00047 31.5 10.2 95 71-172 5-112 (311)
476 cd08258 Zn_ADH4 Alcohol dehydr 79.7 11 0.00025 33.1 8.3 102 62-176 157-265 (306)
477 cd08246 crotonyl_coA_red croto 79.6 5.9 0.00013 36.3 6.7 46 65-110 189-236 (393)
478 PRK06139 short chain dehydroge 79.6 19 0.00042 32.3 9.8 74 69-145 6-93 (330)
479 cd08292 ETR_like_2 2-enoyl thi 79.4 3.6 7.8E-05 36.2 5.1 96 63-174 133-237 (324)
480 PRK12480 D-lactate dehydrogena 79.1 11 0.00024 34.0 8.1 87 69-173 145-232 (330)
481 cd05213 NAD_bind_Glutamyl_tRNA 79.0 21 0.00046 31.8 9.8 72 68-148 176-250 (311)
482 PRK07985 oxidoreductase; Provi 78.9 43 0.00093 29.3 11.7 103 69-174 48-184 (294)
483 PRK07454 short chain dehydroge 78.8 16 0.00036 30.6 8.8 74 69-145 5-92 (241)
484 cd08244 MDR_enoyl_red Possible 78.7 4.7 0.0001 35.4 5.6 98 62-175 135-241 (324)
485 PRK08945 putative oxoacyl-(acy 78.6 19 0.00042 30.3 9.2 76 68-145 10-101 (247)
486 cd05282 ETR_like 2-enoyl thioe 78.4 4.9 0.00011 35.3 5.6 93 66-174 135-236 (323)
487 PRK08324 short chain dehydroge 78.4 18 0.00039 36.1 10.0 73 69-145 421-507 (681)
488 PRK11064 wecC UDP-N-acetyl-D-m 78.4 43 0.00093 31.2 12.0 96 71-179 4-123 (415)
489 PRK08265 short chain dehydroge 78.2 33 0.00071 29.3 10.6 71 69-145 5-89 (261)
490 PRK06701 short chain dehydroge 78.0 40 0.00086 29.5 11.2 74 69-145 45-133 (290)
491 cd08268 MDR2 Medium chain dehy 77.8 10 0.00023 33.0 7.5 96 64-175 139-243 (328)
492 cd05195 enoyl_red enoyl reduct 77.6 9.8 0.00021 32.3 7.2 99 63-175 102-209 (293)
493 TIGR02817 adh_fam_1 zinc-bindi 77.5 44 0.00095 29.5 11.5 90 70-174 149-246 (336)
494 cd01065 NAD_bind_Shikimate_DH 77.1 31 0.00067 26.7 9.3 74 68-147 17-92 (155)
495 PRK13771 putative alcohol dehy 77.1 15 0.00033 32.4 8.5 98 64-176 157-256 (334)
496 cd08256 Zn_ADH2 Alcohol dehydr 77.1 6.7 0.00015 35.2 6.2 97 63-174 168-273 (350)
497 PRK06129 3-hydroxyacyl-CoA deh 77.1 48 0.001 29.4 11.5 95 71-173 3-115 (308)
498 PLN02662 cinnamyl-alcohol dehy 77.0 13 0.00027 32.9 7.9 76 69-145 3-85 (322)
499 PRK06124 gluconate 5-dehydroge 76.9 18 0.0004 30.6 8.6 74 69-145 10-97 (256)
500 PRK07063 short chain dehydroge 76.8 19 0.00042 30.6 8.7 76 69-145 6-95 (260)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-39 Score=278.38 Aligned_cols=230 Identities=37% Similarity=0.678 Sum_probs=207.5
Q ss_pred hhhhcCChHHHHHhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH
Q 048309 24 HISRKNSLAQAHRNISYHYDLD---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGT 82 (288)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~Yd~~---------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~ 82 (288)
+..+.++......++..|||.+ .+.++++||..+++.+++++.+++|.+|||||||+|.
T Consensus 6 ~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~ 85 (283)
T COG2230 6 RLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG 85 (283)
T ss_pred cccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH
Confidence 3445566778899999999999 3448999999999999999999999999999999999
Q ss_pred HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHh
Q 048309 83 FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162 (288)
Q Consensus 83 ~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~ 162 (288)
+++++|++.+.+|+|+++|+++.+.+++++...|++.+++++..|..++. +.||.|+|.++++|++.++...+++++.
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~ 163 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVY 163 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHH
Confidence 99999999889999999999999999999999999889999999999987 4499999999999999899999999999
Q ss_pred cccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh-----------------------
Q 048309 163 SLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL----------------------- 219 (288)
Q Consensus 163 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~----------------------- 219 (288)
++|+|||++++.+++.+..... ....|+.+|+||++.+|+...+.+...+. ++
T Consensus 164 ~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~-~~~v~~~~~~~~hYa~Tl~~W~~~f 239 (283)
T COG2230 164 ALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEA-GFVVLDVESLRPHYARTLRLWRERF 239 (283)
T ss_pred hhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhc-CcEEehHhhhcHHHHHHHHHHHHHH
Confidence 9999999999999998876543 46789999999999999999998876665 33
Q ss_pred ----HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEc
Q 048309 220 ----SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260 (288)
Q Consensus 220 ----~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k 260 (288)
+++.+. +++.+.++|++|+..|+.+|+.|.++.+|+++.|
T Consensus 240 ~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 240 EANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 444444 8899999999999999999999999999999875
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=3.7e-39 Score=280.59 Aligned_cols=223 Identities=49% Similarity=0.809 Sum_probs=181.0
Q ss_pred ChHHHHHhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHH
Q 048309 30 SLAQAHRNISYHYDLD---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVV 88 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~---------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la 88 (288)
+..++..+++.|||.+ .+.++++||.++++.+++++++++|.+|||||||+|.++..++
T Consensus 2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a 81 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAA 81 (273)
T ss_dssp -S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence 3456778888888887 5678999999999999999999999999999999999999999
Q ss_pred HccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 89 RQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 89 ~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
++.+++|+||++|+++.+.+++++++.|+++++++..+|..+++ .+||.|++.++++|+++++...+++++.++|+||
T Consensus 82 ~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 82 ERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp HHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred HHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 98889999999999999999999999999989999999999876 4999999999999999889999999999999999
Q ss_pred cEEEEEeecCCCcccccccCc-hhhHhhhccCCCCCCCHHHHHHHHHHcCCh---------------------------H
Q 048309 169 GLLVLQFSSTPDARYNEYRLS-SDFIKEYIFPGGCLPSLSRITSAMAAASSL---------------------------S 220 (288)
Q Consensus 169 G~l~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~---------------------------~ 220 (288)
|++++..++.+...+...... ..|+.+|+||++.+|+..++...++.. +| +
T Consensus 160 G~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~-~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~ 238 (273)
T PF02353_consen 160 GRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA-GLEVEDVENLGRHYARTLRAWRENFDANRE 238 (273)
T ss_dssp EEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT-T-EEEEEEE-HHHHHHHHHHHHHHHHHTHH
T ss_pred cEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC-CEEEEEEEEcCcCHHHHHHHHHHHHHHHHH
Confidence 999999998877665544333 389999999999999999999855554 44 6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEE
Q 048309 221 KILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQI 256 (288)
Q Consensus 221 ~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~ 256 (288)
++.+. |++.+.|+|++|+..|+++|..|.++.+|+
T Consensus 239 ~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 239 EIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 67776 999999999999999999999999999996
No 3
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=2.3e-33 Score=255.72 Aligned_cols=226 Identities=34% Similarity=0.596 Sum_probs=195.8
Q ss_pred hhhcCChHHHHHhhhhhcCCC--------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHH
Q 048309 25 ISRKNSLAQAHRNISYHYDLD--------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFA 84 (288)
Q Consensus 25 ~~~~~~~~~~~~~~a~~Yd~~--------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~ 84 (288)
..+.++..++..+++.|||.+ ...++.++|.+++..+++.+.++++.+|||||||+|.++
T Consensus 103 ~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a 182 (383)
T PRK11705 103 LFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLA 182 (383)
T ss_pred HhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHH
Confidence 466789999999999999998 346889999999999999999999999999999999999
Q ss_pred HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcc
Q 048309 85 IEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESL 164 (288)
Q Consensus 85 ~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~ 164 (288)
..+++..+++|+|+|+|+++++.|+++++ ++ ++++..+|+.++ +++||.|++..+++|++..++..+++++.++
T Consensus 183 ~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~ 256 (383)
T PRK11705 183 RYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRC 256 (383)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHH
Confidence 99998777899999999999999999874 33 488888998776 3789999999999999877889999999999
Q ss_pred cccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh-------------------------
Q 048309 165 LAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL------------------------- 219 (288)
Q Consensus 165 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~------------------------- 219 (288)
|||||.+++.+++.+... .....|+.+|++|++.+|+..++....+. ++
T Consensus 257 LkpGG~lvl~~i~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~~--~~~v~d~~~~~~hy~~TL~~W~~~f~~ 330 (383)
T PRK11705 257 LKPDGLFLLHTIGSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASEG--LFVMEDWHNFGADYDRTLMAWHENFEA 330 (383)
T ss_pred cCCCcEEEEEEccCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHHC--CcEEEEEecChhhHHHHHHHHHHHHHH
Confidence 999999999887655421 12356889999999999999988876543 33
Q ss_pred --HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCC
Q 048309 220 --SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 220 --~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 263 (288)
+++.+ +|++.+.|+|++|+..|+++|+.|.++.+|+++.|++.
T Consensus 331 ~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~~~ 375 (383)
T PRK11705 331 AWPELAD-NYSERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPRGV 375 (383)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCC
Confidence 44544 89999999999999999999999999999999999763
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.92 E-value=1.9e-23 Score=188.34 Aligned_cols=210 Identities=22% Similarity=0.285 Sum_probs=157.1
Q ss_pred CCHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE
Q 048309 48 EDLKVAQMRKHSLLIEKARV-----SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR 122 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~ 122 (288)
.++.+++.+.+..+++.+.+ .++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++.+..++..+++
T Consensus 92 ~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~ 171 (340)
T PLN02244 92 GDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVS 171 (340)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 46778889999999999887 6788999999999999999998767899999999999999999999888877899
Q ss_pred EEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCccccc--ccCch-----hhHh
Q 048309 123 LYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNE--YRLSS-----DFIK 194 (288)
Q Consensus 123 ~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~-----~~~~ 194 (288)
++++|+.+++ ++++||+|++..+++|+ .+...+++++.++|||||.+++.++......... ..... ....
T Consensus 172 ~~~~D~~~~~~~~~~FD~V~s~~~~~h~--~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 249 (340)
T PLN02244 172 FQVADALNQPFEDGQFDLVWSMESGEHM--PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICA 249 (340)
T ss_pred EEEcCcccCCCCCCCccEEEECCchhcc--CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHh
Confidence 9999999988 67899999999999999 6788999999999999999999876543221110 10001 1111
Q ss_pred hhccCCCCCCCHHHHHHHHHHcCChHHHHhhcCChHHHHHHHHH--------------------------HHHHHhhccc
Q 048309 195 EYIFPGGCLPSLSRITSAMAAASSLSKILALGFNEKFIWTWEYY--------------------------FDYSAAGFKP 248 (288)
Q Consensus 195 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~w~~~--------------------------~~~~~~~f~~ 248 (288)
.+..|. ..+..++.+.+.++ ||+.++...+.+.....|... +..+..+|..
T Consensus 250 ~~~~p~--~~s~~~~~~~l~~a-Gf~~v~~~d~s~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (340)
T PLN02244 250 AYYLPA--WCSTSDYVKLAESL-GLQDIKTEDWSEHVAPFWPAVIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKK 326 (340)
T ss_pred hccCCC--CCCHHHHHHHHHHC-CCCeeEeeeCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence 222221 23677777777665 664444444443333333221 1235677899
Q ss_pred CCccEEEEEEEcCC
Q 048309 249 RTLGNYQIVLSRPG 262 (288)
Q Consensus 249 g~~~~~~~~~~k~~ 262 (288)
|.+..--++++||.
T Consensus 327 g~~~~~~~~~~kp~ 340 (340)
T PLN02244 327 GLIKFAVITCRKPL 340 (340)
T ss_pred CCceeeEEEEeCCC
Confidence 98888889999873
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=2.5e-24 Score=182.06 Aligned_cols=152 Identities=19% Similarity=0.330 Sum_probs=131.4
Q ss_pred hhcCChHHHHHhhhhhcCCCCCCCHHHHH-HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHH
Q 048309 26 SRKNSLAQAHRNISYHYDLDEDEDLKVAQ-MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAE 103 (288)
Q Consensus 26 ~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~-~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~ 103 (288)
.++..+...|++++..||..++ -+.-.+ ..+-+.+++.+...+|.+|||+|||||.++..+++. +.++|+|+|+|+.
T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~-~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ 86 (238)
T COG2226 8 EKQEKVQKVFDKVAKKYDLMND-LMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES 86 (238)
T ss_pred ccHHHHHHHHHhhHHHHHhhcc-cccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH
Confidence 3446778999999999999853 222233 333455667777778999999999999999999998 5579999999999
Q ss_pred HHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 104 QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 104 ~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
|++.++++....+.. +++++++|++++| ++++||+|.+.+.++++ .+++.++++++|+|||||++++.++..|..
T Consensus 87 ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv--~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 87 MLEVAREKLKKKGVQ-NVEFVVGDAENLPFPDNSFDAVTISFGLRNV--TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred HHHHHHHHhhccCcc-ceEEEEechhhCCCCCCccCEEEeeehhhcC--CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999999999988874 4999999999999 99999999999999999 799999999999999999999999887764
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.91 E-value=1.2e-24 Score=185.52 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=93.3
Q ss_pred hcCChHHHHHhhhhhcCCCCCCCHHHHHHHHH-HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHH
Q 048309 27 RKNSLAQAHRNISYHYDLDEDEDLKVAQMRKH-SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAE 103 (288)
Q Consensus 27 ~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~-~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~ 103 (288)
++..+...|+.++..||..+. -+.-.+.+.+ ..+++.+...+|.+|||+|||||.++..++++ +..+|+|+|+|+.
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~-~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMND-LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ---------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHHHHHhCCCcc-ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 445678899999999998743 2333333444 34666667788999999999999999999886 4579999999999
Q ss_pred HHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 104 QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 104 ~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
|++.|+++....+.. +++++++|++++| ++++||+|++.+.++.+ +++...+++++|+|||||++++.+++.|..
T Consensus 84 ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~--~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 84 MLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNF--PDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp HHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG---SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred HHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhh--CCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 999999999988874 8999999999999 78999999999999999 788999999999999999999999988865
No 7
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.90 E-value=2.7e-22 Score=170.99 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=140.1
Q ss_pred CEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 149 (288)
++|||||||+|..+..+++. ++++++|+|+|+++++.++++++..|+.++++++..|+...+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999887 56899999999999999999999988888899999999766644689999999999999
Q ss_pred CHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh----------
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL---------- 219 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~---------- 219 (288)
.+...+++++.++|+|||.+++.++....... . ...... ...++..++.+.+.+. +|
T Consensus 81 --~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~--~~~~~~------~~~~s~~~~~~~l~~~-Gf~~~~~~~~~~ 147 (224)
T smart00828 81 --KDKMDLFSNISRHLKDGGHLVLADFIANLLSA--I--EHEETT------SYLVTREEWAELLARN-NLRVVEGVDASL 147 (224)
T ss_pred --CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc--c--cccccc------cccCCHHHHHHHHHHC-CCeEEEeEECcH
Confidence 67899999999999999999998764321100 0 000010 1234455555444443 22
Q ss_pred ---------------HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCC
Q 048309 220 ---------------SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 220 ---------------~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 263 (288)
+.+...++++.+.++|.+|...|++ |+.|.++..|++++|+..
T Consensus 148 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 205 (224)
T smart00828 148 EIANFLYDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEF 205 (224)
T ss_pred hHhhhccChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEecccc
Confidence 3334436788899999999998887 999999999999999854
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.86 E-value=5.8e-21 Score=166.19 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=117.6
Q ss_pred ChHHHHHhhhhhcCCCCCCCHHHHHHHHHH-HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHH
Q 048309 30 SLAQAHRNISYHYDLDEDEDLKVAQMRKHS-LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMK 106 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~-~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~ 106 (288)
.+...|+.++..||...+ .+.....+.+. .+++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|++|++
T Consensus 34 ~v~~~f~~~A~~YD~~~~-~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~ 112 (261)
T PLN02233 34 ERQALFNRIAPVYDNLND-LLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA 112 (261)
T ss_pred HHHHHHHHhhhHHHHhhh-hhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 456789999999996422 11111112232 3445567778899999999999999998876 3469999999999999
Q ss_pred HHHHHHHH--cCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 107 YAEMKVNE--AGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 107 ~a~~~~~~--~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.|+++... .+...+++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|||||.+++.++..+..
T Consensus 113 ~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 113 VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 99887542 122247999999999998 77899999999999999 688999999999999999999998886653
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.85 E-value=2.8e-20 Score=155.06 Aligned_cols=182 Identities=15% Similarity=0.208 Sum_probs=143.5
Q ss_pred hhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC------CEEEE
Q 048309 25 ISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG------CNYTG 97 (288)
Q Consensus 25 ~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~------~~v~g 97 (288)
..++..+..-+.+++..||..++.-.-.-.+-+-+..+.++.+.++.++||++||||..+..+.++ .. .+|++
T Consensus 56 ~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v 135 (296)
T KOG1540|consen 56 SEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTV 135 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEE
Confidence 444555677899999999998553222223333455778889889999999999999999999887 33 68999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCc--eEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDH--IRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~--v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|++|+|++.++++..+.++... +.++++|++++| ++.+||..++.+.+..+ .++++.+++++|+|||||+|.+.
T Consensus 136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 136 LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999999988887555 899999999999 88999999999999998 78899999999999999999998
Q ss_pred eecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHH
Q 048309 175 FSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 215 (288)
++..-++.+ ...+...|.+.. +|-+.+++....+
T Consensus 214 eFskv~~~~-----l~~fy~~ysf~V--lpvlG~~iagd~~ 247 (296)
T KOG1540|consen 214 EFSKVENEP-----LKWFYDQYSFDV--LPVLGEIIAGDRK 247 (296)
T ss_pred EccccccHH-----HHHHHHhhhhhh--hchhhHhhhhhHh
Confidence 887655321 234455566543 6666666654433
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=7e-21 Score=169.30 Aligned_cols=146 Identities=19% Similarity=0.350 Sum_probs=111.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.++.+|||||||+|.++..+++. +++|+|||+++++++.|+++....+...+++++++|+++++ .+++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46779999999999999999874 78999999999999999988776555457999999999887 66799999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCC----CCCCHHHHHHHHHHc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGG----CLPSLSRITSAMAAA 216 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~p~~~~~~~~~~~~ 216 (288)
+|+ .++..+++++.++|||||.+++.++......+........++.+++.++. ...+..++...++++
T Consensus 209 eHv--~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHV--ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred Hhc--CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 999 77899999999999999999998876432211110111122333333322 245667777666554
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.84 E-value=4.1e-19 Score=154.80 Aligned_cols=155 Identities=15% Similarity=0.262 Sum_probs=120.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
.....+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++... ..++.+.++|+.+.+ ++
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC
Confidence 34577888888899999999999999999999876677999999999999999988654 247999999998877 67
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhcc-CCCCCCCHHHHHHHH
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAM 213 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~p~~~~~~~~~ 213 (288)
++||+|++..++.|++.+++..+++++.++|||||.+++.++....... .......++. ....+++..++.+.+
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN-----WDEEFKAYIKKRKYTLIPIQEYGDLI 190 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC-----cHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 8999999999999997668999999999999999999998876543210 1111122221 123456777777777
Q ss_pred HHcCCh
Q 048309 214 AAASSL 219 (288)
Q Consensus 214 ~~~~~~ 219 (288)
.++ ||
T Consensus 191 ~~a-GF 195 (263)
T PTZ00098 191 KSC-NF 195 (263)
T ss_pred HHC-CC
Confidence 665 44
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.84 E-value=2.7e-20 Score=159.37 Aligned_cols=150 Identities=16% Similarity=0.228 Sum_probs=121.9
Q ss_pred cCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHH
Q 048309 28 KNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQM 105 (288)
Q Consensus 28 ~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~ 105 (288)
+..+...|++++.+||..+...-..........+++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+++.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 445678889999999975221000112222356778888888999999999999999999876 456999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 106 KYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 106 ~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+.++++.+..++ ++++++.+|+.+++ ++++||+|++..+++|+ ++..++++++.++|+|||.+++.+...+.
T Consensus 84 ~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 84 SVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred HHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 999999988777 58999999999887 66899999999999998 67889999999999999999987765544
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.84 E-value=7.3e-20 Score=159.01 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=104.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~ 133 (288)
+.+..+++.+. .++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++++..++..+++++++|+.+++ .
T Consensus 32 ~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 32 QDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 34556777766 45679999999999999999986 78999999999999999999998888778999999998865 5
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+++||+|++..+++|+ +++..+++++.++|||||.+++..+..
T Consensus 110 ~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 110 ETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 6899999999999999 677899999999999999999876654
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.83 E-value=6.8e-19 Score=152.18 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHH--c-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVR--Q-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~--~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
.....+..++... ..++.+|||+|||+|..+..+++ . ++++++|+|+|+.|++.|+++++..+...+++++++|+.
T Consensus 41 ~~~~~~~~~~~~~-~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 41 NIISMIGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHHHHHh-CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 3333444444443 34678999999999999988887 2 678999999999999999999988877678999999999
Q ss_pred CCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 130 QLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 130 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++. ..+|+|++..+++|+++.+...+++++++.|||||.+++.+....
T Consensus 120 ~~~~-~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 120 DIAI-ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred hCCC-CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 8774 359999999999999877788999999999999999999875543
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.82 E-value=2.1e-19 Score=136.26 Aligned_cols=107 Identities=24% Similarity=0.378 Sum_probs=93.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCCCCCCCCEEEEcc-c
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLPKAKKYDRIISCE-M 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~~~~fD~I~~~~-~ 145 (288)
|+.+|||||||+|.++..+++. ++.+|+|+|+|+++++.+++++...+..++++++++|+ ......+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999995 78999999999999999999997777778999999999 4444557899999999 5
Q ss_pred hhhhC-HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAVG-HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++++. .++..++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55442 2578899999999999999999965
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=1.9e-20 Score=156.09 Aligned_cols=109 Identities=25% Similarity=0.440 Sum_probs=99.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
-+|.+|||+|||.|.++..+|+. |.+|+|+|+++.+++.|+..+.+.|+ ++++.+..++++. ..++||+|+|..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999996 89999999999999999999999987 4889999999887 55899999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
+|+ +++..+++.|.+++||||.++++++.....
T Consensus 135 EHv--~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 135 EHV--PDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred Hcc--CCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 999 888999999999999999999998875443
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.81 E-value=7.6e-19 Score=146.76 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=99.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++.+..++ .++++.+.|+.+++.+++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCE
Confidence 3445555567789999999999999999986 78999999999999999999988887 468999999988775578999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|++..+++|+++++...+++++.++|+|||.+++...
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9999999998877899999999999999999765443
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.80 E-value=7.5e-18 Score=158.96 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=119.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
....+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++... ...++++.++|+.+.+ +++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCCCCC
Confidence 3456777777778889999999999999999887678999999999999999987653 3357999999999877 667
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhc-cCCCCCCCHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYI-FPGGCLPSLSRITSAMA 214 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~~~~~~ 214 (288)
+||+|+|..+++|+ .++..++++++++|+|||.+++.++........ . ....++ ..+..+++..++.+.+.
T Consensus 332 ~fD~I~s~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~-~~~~~~~~~g~~~~~~~~~~~~l~ 403 (475)
T PLN02336 332 SFDVIYSRDTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPS-----P-EFAEYIKQRGYDLHDVQAYGQMLK 403 (475)
T ss_pred CEEEEEECCccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc-----H-HHHHHHHhcCCCCCCHHHHHHHHH
Confidence 89999999999999 778999999999999999999988764332111 1 111222 22345678888887776
Q ss_pred HcCCh
Q 048309 215 AASSL 219 (288)
Q Consensus 215 ~~~~~ 219 (288)
++ ||
T Consensus 404 ~a-GF 407 (475)
T PLN02336 404 DA-GF 407 (475)
T ss_pred HC-CC
Confidence 65 54
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=4.1e-18 Score=152.35 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.++..++..+...++.+|||||||+|.++..++......|+|+|+|+.++..++......+...+++++.+|+++++.++
T Consensus 109 ~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 109 WKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred hHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 34566677777667899999999999999999987444799999999998766554333332357999999999988668
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 215 (288)
+||+|+|.++++|+ .++..+++++++.|+|||.+++.++..+............+.. +.....+|+..++.+.+.+
T Consensus 189 ~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~--~~~~~~lps~~~l~~~L~~ 264 (322)
T PRK15068 189 AFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK--MRNVYFIPSVPALKNWLER 264 (322)
T ss_pred CcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc--CccceeCCCHHHHHHHHHH
Confidence 89999999999999 7889999999999999999999876543322111111111100 1111236788888888766
Q ss_pred cCChHH
Q 048309 216 ASSLSK 221 (288)
Q Consensus 216 ~~~~~~ 221 (288)
+ ||+.
T Consensus 265 a-GF~~ 269 (322)
T PRK15068 265 A-GFKD 269 (322)
T ss_pred c-CCce
Confidence 5 4533
No 20
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=1.8e-18 Score=149.97 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=115.2
Q ss_pred CChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a 108 (288)
..+...|+..+..||.. ...|......+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.|++.+
T Consensus 7 ~~i~~~F~~aa~~Y~~~-----~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a 80 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQH-----AELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQA 80 (251)
T ss_pred HHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHH
Confidence 35677888888899853 3356666677888887667789999999999999999875 78999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++.. ...++++|+++++ ++++||+|++..+++++ .++..++.++.++|+|||.+++.++...
T Consensus 81 ~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 81 RQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred HhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 87642 3578999999988 66799999999999998 7889999999999999999999876643
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.79 E-value=1e-17 Score=148.55 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
-++..++..+...++.+|||||||+|.++..++......|+|+|+|+.|+..++..-...+...++.+..+++.+++...
T Consensus 108 ~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 108 IKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 34567788887778899999999999999988876334799999999998775443222222247889999999888556
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 215 (288)
+||+|+|.++++|+ .++..++++++++|+|||.+++.+................+ .+ +.....+|+..++...+++
T Consensus 188 ~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-~k-~~nv~flpS~~~L~~~L~~ 263 (314)
T TIGR00452 188 AFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-AK-MKNVYFIPSVSALKNWLEK 263 (314)
T ss_pred CcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-Hh-ccccccCCCHHHHHHHHHH
Confidence 89999999999999 78899999999999999999998765433211111111111 10 1111246788888887766
Q ss_pred cCChHH
Q 048309 216 ASSLSK 221 (288)
Q Consensus 216 ~~~~~~ 221 (288)
+ ||..
T Consensus 264 a-GF~~ 268 (314)
T TIGR00452 264 V-GFEN 268 (314)
T ss_pred C-CCeE
Confidence 5 5533
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.78 E-value=4.7e-18 Score=141.75 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=97.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++++..++ ++++...|+...+.+++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCE
Confidence 4445555556779999999999999999986 78999999999999999999888777 37888888876664468999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|++..+++|++.++...+++++.++|+|||++++...
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999999777889999999999999999666544
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=1.2e-18 Score=127.61 Aligned_cols=94 Identities=28% Similarity=0.478 Sum_probs=83.5
Q ss_pred EEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHh
Q 048309 74 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHE 152 (288)
Q Consensus 74 LDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~ 152 (288)
||+|||+|..+..+++.++.+|+|+|+++++++.++++.... ++.++.+|+.+++ ++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 799999999999999976789999999999999999987654 4669999999999 88999999999999999 8
Q ss_pred hHHHHHHHHhcccccCcEEEE
Q 048309 153 YMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 153 ~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999985
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=2.9e-17 Score=141.39 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=109.1
Q ss_pred hhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHH
Q 048309 37 NISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 37 ~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~ 111 (288)
..+..||.... .+........+..+.+.. ..++.+|||+|||+|..+..+++. ++++++|+|+|+.|++.|+++
T Consensus 20 ~~a~~y~~~~~~~~p~y~~~~~~~~~l~~~~-~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~ 98 (239)
T TIGR00740 20 NVAEVFPDMIQRSVPGYSNIITAIGMLAERF-VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH 98 (239)
T ss_pred HHHHhCcchhhccCCCHHHHHHHHHHHHHHh-CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 34566765311 122223333333333332 346789999999999999999874 578999999999999999999
Q ss_pred HHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 112 VNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 112 ~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++..+...+++++++|+.+++. ..+|+|++..+++|+++++...++++++++|+|||.+++.+...+
T Consensus 99 ~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 99 IAAYHSEIPVEILCNDIRHVEI-KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred HHhcCCCCCeEEEECChhhCCC-CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 8876655679999999998874 359999999999999877889999999999999999999876543
No 25
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=1.4e-18 Score=145.89 Aligned_cols=142 Identities=20% Similarity=0.353 Sum_probs=107.8
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-C----ceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-D----HIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~----~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
|.+|||+|||+|.++..||+. +++|+|||+++.+++.|++........ . ++++...|++... +.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 478999999999999999995 899999999999999999985444332 1 3667777777765 5699999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCC----CCCHHHHHHHHHHc
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGC----LPSLSRITSAMAAA 216 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~p~~~~~~~~~~~~ 216 (288)
+++|+ .++..+++.+.+.|||||.+++++....-..+..-.-..+.+.+.+.+|.+ +++..++.+.+...
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 99999 999999999999999999999998875543332222223344444444433 45666777666554
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=8e-18 Score=146.45 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
..+......++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++. .+++++.+|+.+
T Consensus 14 ~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~ 87 (258)
T PRK01683 14 DERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIAS 87 (258)
T ss_pred HHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhc
Confidence 345556678888888888999999999999999999987 5789999999999999998764 368999999988
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+.++||+|++..+++|+ .+...+++++.++|+|||.+++..
T Consensus 88 ~~~~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 88 WQPPQALDLIFANASLQWL--PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cCCCCCccEEEEccChhhC--CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 7656799999999999999 678899999999999999999864
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=4.3e-18 Score=136.40 Aligned_cols=107 Identities=27% Similarity=0.539 Sum_probs=96.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC--CCCCCEEEEc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK--AKKYDRIISC 143 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~--~~~fD~I~~~ 143 (288)
+.+.+|||+|||+|.++..+++. ++.+++|+|+|+++++.|+++++..+++ +++++++|+.+++. .++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 46789999999999999999943 6789999999999999999999999996 89999999999763 3799999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+++|+ .+...+++++.+.|++||.+++.+..
T Consensus 81 ~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 78889999999999999999998776
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=3.5e-18 Score=148.52 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
+.+....+++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|++. +++++++|+.+++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 85 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK 85 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC
Confidence 3345567888888888899999999999999999887 578999999999999998653 4789999998876
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.++||+|++..+++|+ .+...+++++.++|||||.+++...
T Consensus 86 ~~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV--PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCCceEEEEehhhhhC--CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 56799999999999999 6789999999999999999998754
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.77 E-value=6.4e-18 Score=150.93 Aligned_cols=211 Identities=16% Similarity=0.126 Sum_probs=139.3
Q ss_pred hhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCC
Q 048309 24 HISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS 101 (288)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s 101 (288)
..+.+.+....|+.++..||........ .......+++.+.+ .++.+|||||||+|.++..+++. ++.+|+++|+|
T Consensus 69 ~~~h~~~~~~~y~~lA~~YD~~~~~~~~--~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S 146 (340)
T PLN02490 69 FIQHKKEAFWFYRFLSIVYDHIINPGHW--TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 146 (340)
T ss_pred hhhhhhcceeEccceeeecCCCeecCcc--hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECC
Confidence 3445555566788888899964211111 11222335555544 46789999999999999998876 56799999999
Q ss_pred HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 102 AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 102 ~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++|++.++++... .+++++.+|+++++ ++++||+|++..+++|+ .+....++++.++|+|||.+++.....+.
T Consensus 147 ~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~--~d~~~~L~e~~rvLkPGG~LvIi~~~~p~ 220 (340)
T PLN02490 147 PHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACLIGPVHPT 220 (340)
T ss_pred HHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChhhhC--CCHHHHHHHHHHhcCCCcEEEEEEecCcc
Confidence 9999999987642 36889999999888 67899999999999999 66788999999999999999886544332
Q ss_pred cccccccCchhhHhhhccC-CCCCCCHHHHHHHHHHcCChHHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEE
Q 048309 181 ARYNEYRLSSDFIKEYIFP-GGCLPSLSRITSAMAAASSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLS 259 (288)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~ 259 (288)
.+ ..++... ....++.+++.+.++++ +|+.++.......++ .+.=..|.+-.+.+++.
T Consensus 221 ~~----------~~r~~~~~~~~~~t~eEl~~lL~~a-GF~~V~i~~i~~~~~----------~~~~~~~~~~~~~v~~~ 279 (340)
T PLN02490 221 FW----------LSRFFADVWMLFPKEEEYIEWFTKA-GFKDVKLKRIGPKWY----------RGVRRHGLIMGCSVTGV 279 (340)
T ss_pred hh----------HHHHhhhhhccCCCHHHHHHHHHHC-CCeEEEEEEcChhhc----------cccccccceeeEEEEEe
Confidence 11 1111100 01235667777665554 333322211111100 11112355666789999
Q ss_pred cCCC
Q 048309 260 RPGN 263 (288)
Q Consensus 260 k~~~ 263 (288)
||..
T Consensus 280 k~~~ 283 (340)
T PLN02490 280 KPAS 283 (340)
T ss_pred cccc
Confidence 9855
No 30
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.75 E-value=3e-17 Score=134.80 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=97.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
..+++.+...++.++||+|||.|+.+.+||++ |..|+++|.|+..++.+++.++..+++ ++..+.|+.+...++.||
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcC
Confidence 34555566556789999999999999999997 899999999999999999999988884 999999999888668999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|++..+++|+.++....+++++.+.++|||++++.+..
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 999999999998889999999999999999999986654
No 31
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.75 E-value=4e-17 Score=137.22 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=118.8
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.+++..++..+|+.++...+...+ ++|.. ....+ ........+++.+.+.++.+|||+|||+|..+..+++..
T Consensus 18 ~~v~~a~~~vpR~~fv~~~~~~~a-y~d~~~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~ 94 (205)
T PRK13944 18 ERVKKAMLSVPREEFVMPEYRMMA-YEDRPLPLFAGATI--SAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAI 94 (205)
T ss_pred HHHHHHHHhCCHhHcCChhHHhcC-ccCCCcccCCCCEe--chHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhc
Confidence 577888999999999998887654 45533 11112 122345677788888889999999999999999988762
Q ss_pred --CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 92 --GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 92 --~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
..+|+++|+++++++.|+++++..++..+++++.+|..+.. ..++||+|++..++++++ +++.+.|+||
T Consensus 95 ~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~g 166 (205)
T PRK13944 95 ERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDG 166 (205)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh--------HHHHHhcCcC
Confidence 46999999999999999999998887667999999998754 557999999999888773 2567899999
Q ss_pred cEEEEEe
Q 048309 169 GLLVLQF 175 (288)
Q Consensus 169 G~l~~~~ 175 (288)
|++++..
T Consensus 167 G~lvi~~ 173 (205)
T PRK13944 167 GVLVIPV 173 (205)
T ss_pred cEEEEEE
Confidence 9998854
No 32
>PRK05785 hypothetical protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=141.04 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=97.6
Q ss_pred CChHHHHHhhhhhcCCCCCC---CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDE---DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~---~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~ 105 (288)
..+...|+.++..||..+.. ......++.+...+.... .++.+|||+|||||.++..+++..+.+|+|+|+|++|+
T Consensus 9 ~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~-~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml 87 (226)
T PRK05785 9 EELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC-GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML 87 (226)
T ss_pred HHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc-CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH
Confidence 34667899999999975321 111222222222222211 24679999999999999999886456999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 106 KYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 106 ~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
+.|++. ...+++|+++++ ++++||+|++.++++|+ .++.++++++.++|||.
T Consensus 88 ~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 88 KMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHAS--DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhcc--CCHHHHHHHHHHHhcCc
Confidence 998764 135789999998 78999999999999999 78899999999999994
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.73 E-value=1.1e-16 Score=140.35 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=98.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEE
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRII 141 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~ 141 (288)
..+.++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.|+++....++ .+++++.+|+.+++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEE
Confidence 45678999999999999988877765 335899999999999999999988887 48999999999887 667999999
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+..+++|. .+...+++++.++|||||++++.++....
T Consensus 152 ~~~v~~~~--~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 152 SNCVINLS--PDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred EcCcccCC--CCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 99999988 67788999999999999999998876443
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.73 E-value=3e-17 Score=140.72 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=119.4
Q ss_pred CChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMK 106 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~ 106 (288)
..+...|++++..||......-..........++..+...++.+|||+|||+|.++..++... ..+++++|+++.+++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 90 (239)
T PRK00216 11 EKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLA 90 (239)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHH
Confidence 355678899999998431100001122344556667766778899999999999999998873 489999999999999
Q ss_pred HHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 107 YAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 107 ~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.+++++...++..+++++.+|+.+.+ ..++||+|++..+++++ .+...+++++.+.|+|||.+++.+...+.
T Consensus 91 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 91 VGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred HHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 99999877666567999999998877 56789999999999998 67889999999999999999988776554
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.73 E-value=1.5e-16 Score=130.95 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=86.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|..+..++.. +..+|+|+|.|+.+++.++++++..+++ +++++++|+.++...++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999998866 5678999999999999999999988884 7999999999876567999999875 33
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++..+++.+.++|+|||.+++.
T Consensus 120 -----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 -----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3467888899999999999985
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.73 E-value=2.3e-16 Score=130.13 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=89.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
++++.+|||+|||+|..+..+++. ++++|+|+|+++.+++.|+++++..+++ +++++.+|+.+++..++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc-
Confidence 345889999999999999999875 6789999999999999999999999985 5999999999877667899999964
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+ .++..+++.+.+.|+|||.+++..
T Consensus 121 ---~--~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 ---V--ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---c--cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 456889999999999999999864
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=9.5e-17 Score=141.79 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=93.5
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..++ ++++...|+.....+++||+|++..+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4569999999999999999986 78999999999999999999988887 68999999887665689999999999999
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+++++...+++++.++|+|||++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 987789999999999999999977644
No 38
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.72 E-value=4.9e-17 Score=131.69 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=100.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE-EEEcccCCCC--CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR-LYLCDYRQLP--KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~~--~~~~f 137 (288)
+-..+.......|||+|||||..-.++--.++++||++|+++.|.+++.+.+.++.. .++. +++++.++++ +++++
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~ 146 (252)
T KOG4300|consen 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSY 146 (252)
T ss_pred hHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCe
Confidence 333444444557899999999998887655789999999999999999999988754 4676 9999999998 88999
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..+++.. +++.+.++++.++|+|||++++-..+...
T Consensus 147 DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 147 DTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred eeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999999888 89999999999999999999997766544
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.72 E-value=4.2e-16 Score=119.94 Aligned_cols=114 Identities=20% Similarity=0.238 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K 133 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~ 133 (288)
....+++.+...++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..+++ +++++.+|+.... .
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh
Confidence 3445677777777889999999999999999987 5679999999999999999999888774 7899999987532 3
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.++||+|++.....+ ..++++.+.+.|+|||.+++...
T Consensus 86 ~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999775444 36899999999999999998653
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.71 E-value=1.1e-16 Score=135.91 Aligned_cols=144 Identities=24% Similarity=0.289 Sum_probs=114.6
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC--CEEEEEcCCHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQMKYAE 109 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~giD~s~~~~~~a~ 109 (288)
...|+.++.+||..+...-..........+++.+...++.+|||+|||+|..+..+++... .+++++|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 4568889999997522111112233445566776666889999999999999999988733 58999999999999999
Q ss_pred HHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++.. ...+++++.+|+.+.+ ..++||+|++..+++|+ .++..+++++.+.|+|||.+++.+...+.
T Consensus 82 ~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 82 KKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred HHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 8875 2357899999999877 55789999999999998 67889999999999999999998776543
No 41
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.71 E-value=2.6e-17 Score=134.24 Aligned_cols=117 Identities=20% Similarity=0.276 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
++..+-...++..+.+....+|.|+|||+|..+..|+++ +++.++|+|.|++|++.|+++. .+++|..+|+.+
T Consensus 13 ~eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~ 86 (257)
T COG4106 13 DERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRT 86 (257)
T ss_pred HhccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhh
Confidence 344555678889998888999999999999999999999 9999999999999999997764 479999999999
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.+...+|+++++.+++++ ++-.+++.++...|+|||++.++-.
T Consensus 87 w~p~~~~dllfaNAvlqWl--pdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 87 WKPEQPTDLLFANAVLQWL--PDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred cCCCCccchhhhhhhhhhc--cccHHHHHHHHHhhCCCceEEEECC
Confidence 9988999999999999999 7788999999999999999998543
No 42
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.71 E-value=1.4e-16 Score=134.99 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=116.1
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHH----HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLK----VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~----~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.+....++..+|++.+...+...+ |... ..++. ..+......+++.+.+.++.+|||||||+|..+..+++..
T Consensus 23 ~~v~~a~~~v~R~~f~~~~~~~~~--y~d~-~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~ 99 (215)
T TIGR00080 23 KRVIDALLSVPREEFVPEHFKEYA--YVDT-PLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIV 99 (215)
T ss_pred HHHHHHHHhCChhhhCCchhHhhC--cCCC-CcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHh
Confidence 567788888999999888777664 3322 11111 1223455678888888999999999999999999998863
Q ss_pred --CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 92 --GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 92 --~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
..+|+++|+++++++.|+++++..++ ++++++.+|..+.. ...+||+|++.....+++ +.+.+.|+||
T Consensus 100 ~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~g 170 (215)
T TIGR00080 100 GRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEG 170 (215)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcC
Confidence 34699999999999999999999988 58999999998754 456899999987766552 3467889999
Q ss_pred cEEEEEeec
Q 048309 169 GLLVLQFSS 177 (288)
Q Consensus 169 G~l~~~~~~ 177 (288)
|++++....
T Consensus 171 G~lv~~~~~ 179 (215)
T TIGR00080 171 GILVMPVGE 179 (215)
T ss_pred cEEEEEEcC
Confidence 999986543
No 43
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.71 E-value=1.9e-16 Score=136.67 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=117.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
+++++...+..-.|++|||||||.|+.+..++.+....|+|+|.++....+.+..-.-.|....+..+...+++++..+.
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 55667777765689999999999999999998875557999999998876655444444443345555567788776689
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHc
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 216 (288)
||+|+|.++++|. .++-..+.++++.|+|||.+++.+...+............+- -+.....+||...+..++++.
T Consensus 183 FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa--~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 183 FDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA--KMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred cCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc--CCCceEEeCCHHHHHHHHHHc
Confidence 9999999999999 889999999999999999999998876554322221111110 011113479999999988887
Q ss_pred CCh
Q 048309 217 SSL 219 (288)
Q Consensus 217 ~~~ 219 (288)
+|
T Consensus 259 -gF 260 (315)
T PF08003_consen 259 -GF 260 (315)
T ss_pred -CC
Confidence 55
No 44
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.71 E-value=2.3e-16 Score=133.02 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCceEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--------------QDHIRL 123 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--------------~~~v~~ 123 (288)
+...+..+...++.+|||+|||.|..+..+|++ |.+|+|+|+|+.+++.+.+. +++ ..++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEE
Confidence 333444444456789999999999999999996 89999999999999976432 121 136899
Q ss_pred EEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 124 YLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 124 ~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++|+.+++ ..+.||.|+...+++|++++.+..+++.+.++|||||++++.++..+
T Consensus 99 ~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 99 FCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred EEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 999999887 24689999999999999989999999999999999999888776543
No 45
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.71 E-value=4.9e-16 Score=138.55 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=104.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.+...++.+|||||||+|.++..++++ +..+++++|. +.+++.++++++..|+.++++++.+|+.+.+.+ .+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CC
Confidence 45667777788899999999999999999988 7789999997 899999999999999888899999999865532 47
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..++|+.+++....+++++++.|+|||++++.++..++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999999999887666788999999999999999999876544
No 46
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=1.8e-16 Score=133.87 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=116.1
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--c
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--T 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~ 91 (288)
.++...++..+|+.++...+...+. -|..-. ......+-.....+++.+.+.++.+|||||||+|..+..+++. .
T Consensus 22 ~~v~~a~~~v~R~~fvp~~~~~~ay-~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~ 100 (212)
T PRK13942 22 KKVIDALLKVPRHLFVPEYLEEYAY-VDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK 100 (212)
T ss_pred HHHHHHHHcCCHhhcCCchhhhcCc-CCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC
Confidence 4678888889999999888776642 222100 0001133455677888888899999999999999999998876 2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcE
Q 048309 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 92 ~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 170 (288)
..+|+++|+++++++.++++++..++ .+++++++|..... ..++||+|++.....+++ +.+.+.|||||+
T Consensus 101 ~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~ 171 (212)
T PRK13942 101 SGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGI 171 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcE
Confidence 36999999999999999999998887 48999999987754 557899999987766552 245678999999
Q ss_pred EEEEe
Q 048309 171 LVLQF 175 (288)
Q Consensus 171 l~~~~ 175 (288)
+++..
T Consensus 172 lvi~~ 176 (212)
T PRK13942 172 MVIPV 176 (212)
T ss_pred EEEEE
Confidence 98854
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=3.4e-17 Score=122.00 Aligned_cols=95 Identities=25% Similarity=0.492 Sum_probs=82.7
Q ss_pred EEEECCcccHHHHHHHHcc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEc-cch
Q 048309 73 VLEIGCGWGTFAIEVVRQT----GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISC-EMM 146 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~~----~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~-~~l 146 (288)
|||+|||+|..+..+++.. ..+++|+|+|++|++.++++....+. +++++++|+.+++ ..++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998762 27999999999999999999988765 7999999999988 67899999995 459
Q ss_pred hhhCHhhHHHHHHHHhcccccCc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
+|+++++...+++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99998999999999999999998
No 48
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=3.9e-16 Score=133.78 Aligned_cols=120 Identities=19% Similarity=0.329 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCC---CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 53 AQMRKHSLLIEKARV---SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 53 a~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
.|......+++.+.. ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.++++.. +++.++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 344444445444432 34579999999999999999887 56689999999999999987653 3689999999
Q ss_pred CCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 129 RQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 129 ~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+.+ ++++||+|++..+++|+ .++..++.++.++|+|||.+++.++...
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9887 67899999999999999 6788999999999999999999766543
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.68 E-value=9.5e-16 Score=128.53 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
.+....+..++..+ .++.+|||+|||+|..+..+++. ++.+++|+|+|+++++.|+++. .++++.++|+.+
T Consensus 28 ~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~ 99 (204)
T TIGR03587 28 AAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD 99 (204)
T ss_pred HHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC
Confidence 34444445555543 46779999999999999999886 6789999999999999998764 246888999888
Q ss_pred CC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 131 LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 131 ~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+ ++++||+|++.++++|+++++..++++++.+++ ++.+++.++..+.
T Consensus 100 -~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 100 -PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred -CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 5 678999999999999998788999999999997 5677777765443
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=2.8e-16 Score=127.76 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=88.4
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEE
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIIS 142 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~ 142 (288)
..+....-.++||+|||.|.++..|+.+. .+++++|+|+.+++.|+++.... ++|+++++|+....++++||+|++
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEE
Confidence 34555555789999999999999999875 48999999999999999998654 489999999988778899999999
Q ss_pred ccchhhhCH-hhHHHHHHHHhcccccCcEEEEEee
Q 048309 143 CEMMEAVGH-EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 143 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+++++++ +++..++.++...|+|||.+++.+.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999964 6789999999999999999999664
No 51
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.68 E-value=2.4e-16 Score=126.80 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
..++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+..... ++++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 467889999999999999999775 6799999999999887 12344444333433 6689999999999
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++|+ .++..+++++.++|||||.+++.+....
T Consensus 88 l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHL--PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGS--SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred Hhhc--ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 9999 6899999999999999999999988754
No 52
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.68 E-value=1.1e-15 Score=129.24 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=94.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCceEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--------------QDHIRL 123 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--------------~~~v~~ 123 (288)
+...+..+...++.+|||+|||.|..+..||++ |++|+|||+|+.+++.+.+ +.++ ..++++
T Consensus 26 L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 26 LQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEE
Confidence 333444445556789999999999999999996 8999999999999998643 2222 246899
Q ss_pred EEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 124 YLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 124 ~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.++|+.+++ ..+.||.|+-..+++|++++.+..+++.+.++|+|||++++.+..
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 999999986 236899999999999999999999999999999999976654443
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.67 E-value=1.2e-15 Score=129.50 Aligned_cols=115 Identities=17% Similarity=0.315 Sum_probs=97.2
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 56 RKHSLLIEKAR--VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 56 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
.....+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...+...++++.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 34455666655 457889999999999999999886 67999999999999999999987776568999999998876
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++||+|++..+++|++.++...+++++.+++++++.+.+
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 789999999999999777888999999999987665554
No 54
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=1.5e-17 Score=123.34 Aligned_cols=95 Identities=24% Similarity=0.457 Sum_probs=66.0
Q ss_pred EEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccchhhh
Q 048309 74 LEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 74 LDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~ 149 (288)
||||||+|.++..+++. +..+++|+|+|+.|++.+++++...+. .+......+..+.. ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999887 678999999999999999999888764 23444444444432 33699999999999999
Q ss_pred CHhhHHHHHHHHhcccccCcEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l 171 (288)
+++..+++++.++|+|||.|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 88999999999999999986
No 55
>PRK08317 hypothetical protein; Provisional
Probab=99.66 E-value=2.8e-15 Score=128.37 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
...+++.+.+.++.+|||+|||+|.++..++.. +.++++|+|+++.+++.++++... ...++++...|+...+ ..
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCC
Confidence 345677788888999999999999999999886 357999999999999999987332 2357999999998877 66
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|++..+++|+ .++..+++++.++|+|||.+++.+..
T Consensus 86 ~~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 86 GSFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 899999999999999 67899999999999999999987643
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.65 E-value=2.3e-15 Score=131.13 Aligned_cols=116 Identities=15% Similarity=0.239 Sum_probs=91.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHHHHH----HcC---------
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGT----FAIEVVRQ-T-----GCNYTGITLSAEQMKYAEMKVN----EAG--------- 116 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~giD~s~~~~~~a~~~~~----~~g--------- 116 (288)
.+++.....++.+|+|+|||+|. +++.+++. + +.+|+|+|+|+.|++.|++.+- ..+
T Consensus 90 ~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~y 169 (264)
T smart00138 90 LLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARY 169 (264)
T ss_pred HHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhh
Confidence 33333333456799999999996 55566554 2 3689999999999999997531 011
Q ss_pred -------------CCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 117 -------------LQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 117 -------------~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+..++++.++|+.+.+ +.++||+|+|.++++|++++....+++++++.|+|||.+++..
T Consensus 170 f~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 170 FSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1136899999999977 5789999999999999987888899999999999999999843
No 57
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=121.16 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=127.5
Q ss_pred hhhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcC---CCCC-CEEEEECCcccHHHHHHH
Q 048309 13 SKVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKAR---VSKE-HEVLEIGCGWGTFAIEVV 88 (288)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~---~~~~-~~vLDiGcG~G~~~~~la 88 (288)
++|+-+-+|-. .......++.+|=|.++-+--++++.+.+..+.+... +... .+|||+|||.|.+...|+
T Consensus 13 S~LGtK~yWD~------~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 13 SKLGTKSYWDA------AYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred cccchHHHHHH------HHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHH
Confidence 44777777755 3445566777888887666666788888888887765 3333 399999999999999999
Q ss_pred Hc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhC------HhhHHHHHHH
Q 048309 89 RQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG------HEYMEEYFGC 160 (288)
Q Consensus 89 ~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~------~~~~~~~l~~ 160 (288)
+. .....+|+|.|+.+++.|+..++..++++.|+|.+.|+.+.. ..++||+|+--+++..++ ...+..++..
T Consensus 87 ~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 87 KEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred HhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 98 445699999999999999999999999877999999999876 678999999888776652 1223567888
Q ss_pred HhcccccCcEEEEEeecC
Q 048309 161 CESLLAKDGLLVLQFSST 178 (288)
Q Consensus 161 ~~~~LkpgG~l~~~~~~~ 178 (288)
+.++|+|||.|+|..++.
T Consensus 167 v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCNF 184 (227)
T ss_pred HhhccCCCcEEEEEecCc
Confidence 999999999999976653
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.65 E-value=3.1e-15 Score=128.19 Aligned_cols=142 Identities=22% Similarity=0.336 Sum_probs=109.5
Q ss_pred hHHHHHhhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 048309 31 LAQAHRNISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a 108 (288)
....|+++++-|..... ..........+..+...+...++.+|||||||+|.++..+++. +++++++|+++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a 86 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVA 86 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHH
Confidence 35667777774442211 1112222233445555555667889999999999999999885 77999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++++...+. ++++...|+.+.+ ..++||+|++..+++|+ .+...+++.+.++|+|||.+++..+.
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 87 RLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 998877665 5788888888765 55799999999999999 67789999999999999999987654
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.64 E-value=5.9e-15 Score=122.27 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=91.8
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
.+++.+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++++..++ .+++++.+|... ...++||
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~~~~~D 99 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-ELPGKAD 99 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hcCcCCC
Confidence 4566777778899999999999999999887 567999999999999999999988887 479999998753 2346899
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|++.....++ ..+++.+.+.|+|||++++...
T Consensus 100 ~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 100 AIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEe
Confidence 99998765443 6688999999999999988543
No 60
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.63 E-value=2e-15 Score=123.18 Aligned_cols=106 Identities=21% Similarity=0.441 Sum_probs=89.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++++.++++. ++++..|..+...+++||+|+++..++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 6779999999999999999998 55579999999999999999999999864 999999998766678999999998765
Q ss_pred hhCH---hhHHHHHHHHhcccccCcEEEEEe
Q 048309 148 AVGH---EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 ~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.-.. .....+++++.+.|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 4421 346889999999999999998744
No 61
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=5.4e-15 Score=129.00 Aligned_cols=113 Identities=13% Similarity=0.160 Sum_probs=94.0
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHH-HH-Hc-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCceEEEEcccCCCC-CCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIE-VV-RQ-TGCNYTGITLSAEQMKYAEMKVNE-AGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~-la-~~-~~~~v~giD~s~~~~~~a~~~~~~-~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
+..+...++++|+|||||.|.++.. ++ .. ++.+++|+|+++++++.|++.++. .++.++++|.++|+.+.. ..+.
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 3444444778999999998755433 33 33 778999999999999999999964 788778999999998875 4578
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++. +++++.++++.++++++.+.|+|||++++..
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999 8888876889999999999999999999854
No 62
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.5e-15 Score=122.99 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=122.5
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD-----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~-----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 90 (288)
.|++.-+...+|+.++...+...+ |+.. ...++ .+-.....+++.+.++++.+|||||||+|+.+.-+++-
T Consensus 18 ~~v~~A~~~vPRe~FVp~~~~~~A--Y~d~~lpi~~gqti--s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l 93 (209)
T COG2518 18 ERVLKAFLAVPRELFVPAAYKHLA--YEDRALPIGCGQTI--SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL 93 (209)
T ss_pred HHHHHHHHhCCHHhccCchhhccc--ccCCcccCCCCcee--cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH
Confidence 678888899999999999987765 4433 11122 23345678899999999999999999999999999986
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc
Q 048309 91 TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 91 ~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
..+|+.+|..++..+.|+++++..|+. |+.++++|...- +....||.|+.......+|. . +.+.|++||
T Consensus 94 -~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~----~----Ll~QL~~gG 163 (209)
T COG2518 94 -VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE----A----LLDQLKPGG 163 (209)
T ss_pred -hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEeeccCCCCH----H----HHHhcccCC
Confidence 449999999999999999999999994 799999999874 46689999999988887743 2 347899999
Q ss_pred EEEEEeecCCC
Q 048309 170 LLVLQFSSTPD 180 (288)
Q Consensus 170 ~l~~~~~~~~~ 180 (288)
++++-....+.
T Consensus 164 rlv~PvG~~~~ 174 (209)
T COG2518 164 RLVIPVGSGPA 174 (209)
T ss_pred EEEEEEccCCc
Confidence 99996653333
No 63
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=6.6e-15 Score=139.54 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=93.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIIS 142 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~ 142 (288)
..++.+|||+|||+|..+..+++. ++.+++|+|+|+.|++.|+++....+ .++.++++|+.+++ ++++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999999998876 77899999999999999998876554 36888999998865 4679999999
Q ss_pred ccchhhh-----------CHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 143 CEMMEAV-----------GHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 143 ~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
..++|++ +.++...+++++.++|||||.+++.+...+
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9988875 235778999999999999999999875433
No 64
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.60 E-value=3.2e-14 Score=121.52 Aligned_cols=101 Identities=20% Similarity=0.344 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...++++..+|+.. ..++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchh
Confidence 456789999999999999999986 678999999999999999999887765679999999543 34789999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~ 170 (288)
+|++.+....+++++.+.+++++.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEE
Confidence 998777888899999887754443
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=5.8e-15 Score=123.78 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC---CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP---KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~---~~~~fD~I~~~ 143 (288)
++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.+++++...++ .+++++++|+ ..++ ++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999999887 667899999999999999999988887 5799999999 5544 45789999997
Q ss_pred cchhhh------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAV------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+. .......+++++.++|+|||.+++.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 654321 11124789999999999999999854
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.60 E-value=1.5e-14 Score=131.07 Aligned_cols=117 Identities=12% Similarity=0.213 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CceEEEEcccCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQ--DHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~~~~~ 135 (288)
..+++.+....+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++++.++.. .+++++..|..+...++
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 34666666555679999999999999999987 6789999999999999999999877643 36899999986544446
Q ss_pred CCCEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|+|+..++.. +.....++++.+.+.|+|||.+++..
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 89999998877643 33345789999999999999999964
No 67
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.60 E-value=4.7e-14 Score=113.92 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 127 (288)
+++....+. -.+.+|.+.++.+++|||||||..+..++.. +.++|+++|-++++++..++++++.|+ +|++++.++
T Consensus 16 p~TK~EIRa--l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~ 92 (187)
T COG2242 16 PMTKEEIRA--LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGD 92 (187)
T ss_pred CCcHHHHHH--HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEecc
Confidence 344443333 4588899999999999999999999999955 788999999999999999999999997 699999999
Q ss_pred cCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 128 YRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 128 ~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+-+.. ...++|+|+..+. .. .+.+++.+...|||||++++...+
T Consensus 93 Ap~~L~~~~~~daiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 93 APEALPDLPSPDAIFIGGG-GN-----IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred chHhhcCCCCCCEEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEeec
Confidence 98764 2238999999887 44 488999999999999999996654
No 68
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.60 E-value=1.3e-14 Score=136.90 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=97.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--CC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--LP-KA 134 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~-~~ 134 (288)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++.. +..++++++++|+.+ ++ ++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence 345666666667789999999999999999986 569999999999998876532 222579999999964 44 56
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++||+|++..+++|++.++...+++++.++|||||.+++.+...
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 79999999999999977778999999999999999999976543
No 69
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.60 E-value=3.5e-14 Score=118.72 Aligned_cols=111 Identities=21% Similarity=0.344 Sum_probs=93.2
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~ 135 (288)
..+..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..++..+++++.+|+.+.. ..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 3467788889999999999999999998875 346899999999999999999998886568999999997743 346
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|++... . ..+..+++.+.+.|+|||++++..
T Consensus 111 ~~D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 111 KFDRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 8999998642 1 456789999999999999998743
No 70
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.59 E-value=3.4e-14 Score=120.07 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=112.4
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHH----HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLK----VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~----~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.++...++..+|++.+...+...+ |.... .++. -.+......+++.+.+.++.+|||+|||+|..+..+++.
T Consensus 24 ~~~~~a~~~~~r~~f~p~~~~~~a--y~d~~-~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~- 99 (212)
T PRK00312 24 ERVLEAIEATPRELFVPEAFKHKA--YENRA-LPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL- 99 (212)
T ss_pred HHHHHHHHcCCHhHcCCchHHhcC--ccCCC-ccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-
Confidence 366777888888888777776654 33221 1111 123334456777788888999999999999999888775
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcE
Q 048309 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 92 ~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 170 (288)
..+++++|+++++++.++++++..++. +++++.+|..+.. ..++||+|++...+++++ +.+.+.|+|||.
T Consensus 100 ~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~ 170 (212)
T PRK00312 100 VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEIP--------RALLEQLKEGGI 170 (212)
T ss_pred hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhhh--------HHHHHhcCCCcE
Confidence 458999999999999999999988884 6999999986643 447899999988776652 346789999999
Q ss_pred EEEEee
Q 048309 171 LVLQFS 176 (288)
Q Consensus 171 l~~~~~ 176 (288)
+++...
T Consensus 171 lv~~~~ 176 (212)
T PRK00312 171 LVAPVG 176 (212)
T ss_pred EEEEEc
Confidence 998665
No 71
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.58 E-value=3.1e-14 Score=117.16 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=89.2
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..+. +++++.+|+.+.. .++||+|+++.
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~ 90 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNP 90 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECC
Confidence 33445679999999999999999986 44899999999999999999988775 5899999987654 35899999998
Q ss_pred chhhhCH-------------------hhHHHHHHHHhcccccCcEEEEEeec
Q 048309 145 MMEAVGH-------------------EYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 145 ~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+++.+. .....+++++.++|+|||.+++....
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 7765531 12467899999999999999986543
No 72
>PRK06202 hypothetical protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=122.56 Aligned_cols=107 Identities=16% Similarity=0.268 Sum_probs=86.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRI 140 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I 140 (288)
..++.+|||+|||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++.+.+...++ .+++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356779999999999998888752 3459999999999999998876443 4667777766666 56899999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++.+++|+++++...+++++.++++ |.+++.+...+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999999976667889999999998 66666666554
No 73
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.57 E-value=2.5e-14 Score=129.26 Aligned_cols=118 Identities=15% Similarity=0.205 Sum_probs=98.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---C
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---K 133 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~ 133 (288)
...+++.+....+..+||||||+|..+..+|+. +...++|+|+++.+++.+.+++...++ .|+.++++|+..+. +
T Consensus 111 ~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 111 IDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCC
Confidence 346677777667789999999999999999998 778999999999999999999999998 48999999997642 6
Q ss_pred CCCCCEEEEccchhhhCHh----hHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEAVGHE----YMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
++++|.|++.+...+.... ....+++.+.++|+|||.+.+.+-
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 7899999998765543111 126899999999999999998553
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.57 E-value=8.7e-14 Score=118.39 Aligned_cols=105 Identities=28% Similarity=0.466 Sum_probs=92.0
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++++...|+.+.+ ..++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4779999999999999998875 668999999999999999998877652 6899999988776 34789999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+ .++..+++++.+.|+|||.+++.+..
T Consensus 123 ~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHV--PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhC--CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 999 77889999999999999999987654
No 75
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.57 E-value=1.3e-14 Score=121.63 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=111.8
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD-----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~-----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 90 (288)
.+....++..+|+.++...+...+ |... ....+ .+-..+..+++.+.++++.+|||||||+|+.+..++.-
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~a--Y~d~~l~i~~~~~i--s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~l 93 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLA--YEDRPLPIGCGQTI--SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHL 93 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGT--TSSS-EEEETTEEE----HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCC--CCCCCeeecceeec--hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh
Confidence 367788899999999998887753 4433 11222 34567788999999999999999999999999999886
Q ss_pred --cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhccccc
Q 048309 91 --TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167 (288)
Q Consensus 91 --~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkp 167 (288)
....|+++|..+..++.|+++++..++. |+.++.+|...-. ....||.|++......++ .. +.+.|++
T Consensus 94 vg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip----~~----l~~qL~~ 164 (209)
T PF01135_consen 94 VGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP----EA----LLEQLKP 164 (209)
T ss_dssp HSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SEEEEEESSBBSS------HH----HHHTEEE
T ss_pred cCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCcCEEEEeeccchHH----HH----HHHhcCC
Confidence 2347999999999999999999998884 8999999987644 567899999998877653 22 4577999
Q ss_pred CcEEEEEee
Q 048309 168 DGLLVLQFS 176 (288)
Q Consensus 168 gG~l~~~~~ 176 (288)
||++++-..
T Consensus 165 gGrLV~pi~ 173 (209)
T PF01135_consen 165 GGRLVAPIG 173 (209)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEEc
Confidence 999998544
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=1.4e-14 Score=120.75 Aligned_cols=106 Identities=23% Similarity=0.331 Sum_probs=88.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~ 143 (288)
...++||||||+|.++..+++. +..+++|+|+++.+++.|++++...++. +++++++|+.+++ +++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 7789999999999999999999988884 8999999997643 34689999998
Q ss_pred cchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...+.... ....+++++.++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 754433110 12579999999999999999854
No 77
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.56 E-value=4.2e-14 Score=125.65 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=85.5
Q ss_pred HHHHHHHcCC---CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----CCceEEEEcccCC
Q 048309 58 HSLLIEKARV---SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL----QDHIRLYLCDYRQ 130 (288)
Q Consensus 58 ~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~ 130 (288)
++.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.+..+. ..++++..+|+.+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 3444444432 35789999999999999999986 78999999999999999999876421 1357888899876
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
+ +++||+|+|..+++|++.+....+++.+.+ +.+||.++
T Consensus 209 l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 209 L--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred c--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 5 478999999999999976666677777765 45555544
No 78
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=3.1e-14 Score=120.79 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=96.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKY 137 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~f 137 (288)
..........+|||+|||+|..+..++++ ..++++|||+++++.+.|+++++.+++..+++++++|+.++. ...+|
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 34455556789999999999999999998 668999999999999999999999999999999999999976 34579
Q ss_pred CEEEEccchhhh----------------CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAV----------------GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~----------------~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+|+|+..+.-. ..-+.+++++.+.++|||||.+.+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999998755322 2234688999999999999999983
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.55 E-value=8.7e-14 Score=125.27 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=92.6
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
.+++.+......+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++.+++. .+++..|.... ..++||
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCcc
Confidence 3455555445568999999999999999987 6679999999999999999999998873 57788887653 357899
Q ss_pred EEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++..+|+. .......+++++.+.|+|||.+++..
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 99999888753 22567899999999999999998854
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=117.87 Aligned_cols=117 Identities=16% Similarity=0.247 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+...+..+...++.+|||+|||+|.++..+++....+++++|+++.+++.++++++..++ +++++.+|+.+...+++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 4455566666778889999999999999999886334999999999999999999988776 58899999877545578
Q ss_pred CCEEEEccchhhhC-------------------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVG-------------------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|+++..+...+ ......+++++.++|||||++++..
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999975432211 0125678899999999999999743
No 81
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=1.9e-14 Score=109.81 Aligned_cols=107 Identities=26% Similarity=0.498 Sum_probs=89.2
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l 146 (288)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++.++++++++|+.+.. ..++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999887438999999999999999999999988788999999998865 56899999998776
Q ss_pred hhhC------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 147 EAVG------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.... .+....+++++.++|+|||.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5321 12457899999999999999998653
No 82
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.54 E-value=7.8e-14 Score=123.96 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=100.7
Q ss_pred hcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHH
Q 048309 27 RKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQ 104 (288)
Q Consensus 27 ~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~ 104 (288)
+...+.........+|..-.. .+-.......+++.+ .++.+|||+|||+|..+..+++. . +.+|+++|+|++|
T Consensus 26 ~G~~lf~~i~~~peYy~tr~E---~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m 100 (301)
T TIGR03438 26 RGSELFEQICELPEYYPTRTE---AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADA 100 (301)
T ss_pred hHHHHHHHHHCCCccccHHHH---HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH
Confidence 333444444455556653211 111122223344444 36679999999999999999887 2 5799999999999
Q ss_pred HHHHHHHHHHcCCCCceEEEEcccCCC-C-CCC----CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 105 MKYAEMKVNEAGLQDHIRLYLCDYRQL-P-KAK----KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 105 ~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~----~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++.+++++......-++.++++|+.+. + +.. ...++++..++.++++++...+++++++.|+|||.+++..-..
T Consensus 101 L~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 101 LKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 999999877543212577899999873 3 221 2234445567888888889999999999999999999855443
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.54 E-value=2e-13 Score=113.92 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=90.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-CCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAK 135 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~ 135 (288)
..++..+...++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..++ .+++++.+|+.+ ++ ...
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCC
Confidence 34677777788899999999999999999865 567999999999999999999998887 479999999865 22 224
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+|.++.... .....+++++.+.|+|||.+++...
T Consensus 109 ~~d~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 5677765321 3457899999999999999998654
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.54 E-value=2.1e-13 Score=120.44 Aligned_cols=111 Identities=21% Similarity=0.333 Sum_probs=88.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..++... .++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++..+++..++.+...+.... ..++||+
T Consensus 151 ~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDl 228 (288)
T TIGR00406 151 EWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADV 228 (288)
T ss_pred HHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceE
Confidence 3444433 4678999999999999998887644589999999999999999999988876677777764332 3578999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+++...+. ...++.++.++|+|||.++++.+.
T Consensus 229 Vvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 229 IVANILAEV-----IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999765443 467899999999999999996653
No 85
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=122.95 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=113.1
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcCCCCC----CC---HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHH
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYDLDED----ED---LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVR 89 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~----~~---l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~ 89 (288)
|++..++..+|+..++..+. .+..|....- .. -...+......+++.+.++++.+|||||||+|.++..+++
T Consensus 22 ~vl~a~~~vpRe~Fvp~~~~-~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 22 HIAKAFLEVPREEFLTKSYP-LSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred HHHHHHHcCCHHHcCCcchh-hhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHH
Confidence 89999999999999997763 2233432210 00 0111234556777888888899999999999999999988
Q ss_pred ccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccc
Q 048309 90 QTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA 166 (288)
Q Consensus 90 ~~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk 166 (288)
..+ ..|+++|+++++++.|+++++..++ .++.++++|..+.. ..++||+|++...+.+++ ..+.+.|+
T Consensus 101 ~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~Lk 171 (322)
T PRK13943 101 VVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVP--------ETWFTQLK 171 (322)
T ss_pred hcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECCchHHhH--------HHHHHhcC
Confidence 632 4799999999999999999998888 57999999987655 446899999987666552 23567899
Q ss_pred cCcEEEEEe
Q 048309 167 KDGLLVLQF 175 (288)
Q Consensus 167 pgG~l~~~~ 175 (288)
|||.+++..
T Consensus 172 pgG~Lvv~~ 180 (322)
T PRK13943 172 EGGRVIVPI 180 (322)
T ss_pred CCCEEEEEe
Confidence 999988854
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.54 E-value=2.2e-13 Score=119.99 Aligned_cols=109 Identities=20% Similarity=0.360 Sum_probs=88.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..++.++++++++|+.+..+.++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45579999999999999999987 66799999999999999999999998877899999998653344689999997421
Q ss_pred ------hhhC-----------------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 147 ------EAVG-----------------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ------~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.++. ......+++.+.+.|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 02346789999999999999998543
No 87
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.52 E-value=2e-13 Score=115.34 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=95.5
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------------HcCCCCceEEEEccc
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------------EAGLQDHIRLYLCDY 128 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------------~~g~~~~v~~~~~d~ 128 (288)
+..+...++.+||+.|||.|..+..||++ |.+|+|+|+|+.+++.+.+... ..+ .+++++++|+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~--~~i~~~~gD~ 112 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG--DDIEIYVADI 112 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc--CceEEEEccC
Confidence 34455556789999999999999999997 8899999999999998755210 012 3799999999
Q ss_pred CCCCC----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 129 RQLPK----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 129 ~~~~~----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+++. .+.||+|+-..++++++++.+.++.+.+.++|+|||.+++.++.
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 99862 36899999999999999999999999999999999999997764
No 88
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.52 E-value=1.6e-13 Score=120.30 Aligned_cols=95 Identities=19% Similarity=0.336 Sum_probs=77.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-c---CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-T---GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~---~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~ 142 (288)
.++.+|||+|||+|.++..+++. + +..++|+|+|+.+++.|+++. +++.+.++|+.+++ .+++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45578999999999999998875 2 247999999999999987653 36899999999988 6789999998
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..+- ..++++.++|||||.+++....
T Consensus 158 ~~~~---------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 158 IYAP---------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ecCC---------CCHHHHHhhccCCCEEEEEeCC
Confidence 6541 2356788999999999986543
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.50 E-value=6.7e-13 Score=117.07 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=91.7
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
+..++..+. ..++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|+++++..++..+++++++|+.+..+..
T Consensus 102 v~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~ 181 (284)
T TIGR00536 102 VEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQ 181 (284)
T ss_pred HHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCC
Confidence 344444432 223369999999999999999987 567999999999999999999999888656999999987643444
Q ss_pred CCCEEEEccc-------------hhhhCH----------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEM-------------MEAVGH----------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~-------------l~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|+++.. ..|-+. ..+..+++++.++|+|||.+++...
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 8999999632 122111 2467789999999999999988553
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.50 E-value=5.4e-13 Score=120.11 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
.++.....+++.+|||+|||+|.++..++. .+.+++|+|+++.|++.++.+++..|++ ++++.++|+.+++ .+++||
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCC
Confidence 344555677889999999999999988776 4789999999999999999999999985 4899999999988 568999
Q ss_pred EEEEccchhhh-------CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAV-------GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+++..+... .......+++++.++|+|||++++...
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99997543211 112368899999999999999988544
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=5.5e-13 Score=118.57 Aligned_cols=106 Identities=21% Similarity=0.367 Sum_probs=86.8
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch--
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM-- 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l-- 146 (288)
+.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++++..++..+++++++|+.+..+.++||+|+++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999987 67899999999999999999999988866799999998654344689999997421
Q ss_pred ----h-------hhC----------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 147 ----E-------AVG----------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ----~-------~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. |-+ .+....+++++.+.|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 111 1234678999999999999999854
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=99.50 E-value=5.1e-13 Score=110.34 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...++..+ +.++++|+.+....++||+|+++..
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 357789999999999999999987 78999999999999999999988877433 8899999877544458999998765
Q ss_pred hhhh-------------------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAV-------------------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+. +......+++++.++|+|||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4321 12345778999999999999988753
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.50 E-value=3e-13 Score=117.01 Aligned_cols=117 Identities=20% Similarity=0.352 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
..+..+++.+. ..+.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...+++ +++++++|+.+..+.
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcC
Confidence 44455566554 34569999999999999999987 6679999999999999999999988884 799999999774456
Q ss_pred CCCCEEEEccchhh------hCH------------------hhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEA------VGH------------------EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++||+|+++..+.. +.. .....+++++.++|+|||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 79999999654321 111 12347889999999999999984
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.49 E-value=6.9e-13 Score=114.87 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=77.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++..++.+..+| .+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~ 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILAN 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHH
Confidence 478899999999999998877753346999999999999999999988774344443332 2799999875433
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....++.++.++|||||.++++.+
T Consensus 191 -----~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 191 -----PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred -----HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 346789999999999999999654
No 95
>PRK04266 fibrillarin; Provisional
Probab=99.49 E-value=5e-13 Score=113.59 Aligned_cols=105 Identities=21% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~f 137 (288)
+.+.+.++.+|||+|||+|.++..+++. ...+|+|+|+++.|++.+.++++.. .|+.++.+|+.+. +..++|
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccC
Confidence 3578889999999999999999999987 3458999999999999887776653 4789999998752 124679
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+|++.... +.....+++++.++|||||.+++.
T Consensus 143 D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 999965321 123355789999999999999995
No 96
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.48 E-value=3.3e-13 Score=109.68 Aligned_cols=97 Identities=14% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C--CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P--KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~--~~~~fD~I~~~~ 144 (288)
+++.+|||+|||.|.+...|.+..+++..|+|++++.+..|.++ .+.++++|+.+- . ++++||.|+++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 48899999999999999999887788999999999998887654 367999999873 3 789999999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++++ .++..+++++.|+ |...++++.+
T Consensus 84 tLQ~~--~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 84 TLQAV--RRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHhH--hHHHHHHHHHHHh---cCeEEEEecC
Confidence 99999 7889998888655 7777775544
No 97
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=5e-13 Score=112.52 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 53 AQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 53 a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
...-++..+.+... ++++.+|||||||+|.++..+++. ....|+|||+++ + .+. .+++++++|+.
T Consensus 34 r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~ 101 (209)
T PRK11188 34 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFR 101 (209)
T ss_pred hHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCC
Confidence 33345556666666 578889999999999999999887 346899999988 1 123 36899999998
Q ss_pred CCC---------CCCCCCEEEEccchhhhCHh---------hHHHHHHHHhcccccCcEEEEEeecC
Q 048309 130 QLP---------KAKKYDRIISCEMMEAVGHE---------YMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 130 ~~~---------~~~~fD~I~~~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+.+ ..++||+|+|..+.++.+.. ....+++.+.++|+|||.+++..+..
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 842 45789999997655443211 12568999999999999999976543
No 98
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.6e-13 Score=115.66 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
++.+|||+|||+|.+++..++-...+|+|+|++|.+++.|+++++.++++..++....+....+..++||+|+++-. -
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL-A- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL-A- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-H-
Confidence 78999999999999999998864456999999999999999999999986434444444444445579999999742 2
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+-...+...+.+.|||||.++++-+-
T Consensus 240 ---~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 240 ---EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 33568889999999999999997643
No 99
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.46 E-value=3.2e-12 Score=109.52 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 51 KVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 51 ~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
...+.+.+..+++.. ++++|||+|||+|..+..++.. ...+|+++|+++++++.|+++++..|+.++++++.+|+
T Consensus 53 ~~~~g~~L~~l~~~~---~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 53 PVDEGLFLSMLVKIM---NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred CHHHHHHHHHHHHHh---CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 344555555555543 5679999999999998888775 35799999999999999999999999988899999999
Q ss_pred CCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 129 RQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 129 ~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+.- +.++||+|++... +..+..++..+.++|+|||++++...
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 7742 1468999998632 24567889999999999999988553
No 100
>PRK04457 spermidine synthase; Provisional
Probab=99.46 E-value=4.1e-13 Score=116.89 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=87.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~ 144 (288)
.++.+|||||||+|.++..+++. ++.+++++|+++++++.|++.+...+..++++++.+|+.++- ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 778999999999999999999865544468999999987643 346899999863
Q ss_pred chh-hhCH-hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 145 MME-AVGH-EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 145 ~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.-. ..+. -...++++++.+.|+|||++++..+..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 211 1111 123789999999999999999965543
No 101
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=109.95 Aligned_cols=134 Identities=23% Similarity=0.371 Sum_probs=102.2
Q ss_pred HHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCC--CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH
Q 048309 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSK--EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV 112 (288)
Q Consensus 35 ~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~ 112 (288)
.+..|..|+.. ..+..-|.......++.+.++. +.-|||||||+|..+..+... +...+|+|+|+.|++.|.+.-
T Consensus 16 nd~eA~kYt~n--sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e 92 (270)
T KOG1541|consen 16 NDTEAPKYTQN--SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERE 92 (270)
T ss_pred chhhhhhcccc--ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhh
Confidence 34456667754 3344455666667777777666 678999999999999988774 789999999999999998632
Q ss_pred HHcCCCCceEEEEcccCC-CC-CCCCCCEEEEccchhhh---------CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 113 NEAGLQDHIRLYLCDYRQ-LP-KAKKYDRIISCEMMEAV---------GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 113 ~~~g~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-+ -.++.+|+-. +| .+++||.+++..+++++ |...+..|+..++..|++|++.+++...
T Consensus 93 ~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 93 LE------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred hh------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 11 2577788765 55 77999999998776543 4455678999999999999999997654
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-12 Score=112.99 Aligned_cols=116 Identities=21% Similarity=0.361 Sum_probs=95.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
+.+++.+....+.+|||+|||.|-+++.+++. +..+++.+|++..+++.|++++..++++ +..+...|..+-..+ +|
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~-kf 225 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEG-KF 225 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccccc-cc
Confidence 55677777777779999999999999999998 7789999999999999999999999885 446777777664443 99
Q ss_pred CEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|.|+|+..+|.= ...--.++++...+.|++||.|.+...
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999988742 112234899999999999999998544
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=2.9e-12 Score=112.42 Aligned_cols=117 Identities=19% Similarity=0.342 Sum_probs=90.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
+..++......++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.+++++. .....+++++.+|+.+....++
T Consensus 97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~ 175 (275)
T PRK09328 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGR 175 (275)
T ss_pred HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCc
Confidence 344444555567789999999999999999987 56899999999999999999987 3333579999999865434578
Q ss_pred CCEEEEccchhh------h------------------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEA------V------------------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~------~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|+++....- + +.+....+++++.++|+|||.+++..
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 999999643211 1 01335678899999999999999843
No 104
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.44 E-value=6e-13 Score=112.42 Aligned_cols=119 Identities=26% Similarity=0.316 Sum_probs=94.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCceEEEEc
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-A------G----LQDHIRLYLC 126 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~------g----~~~~v~~~~~ 126 (288)
+...++.+...++.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.... . + -.++|++.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 344455567778889999999999999999997 88999999999999988433211 0 0 0146899999
Q ss_pred ccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+++ ..++||+|+=..+++.++++.+.++.+.+.++|+|||.+++.+..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999987 335899999999999999999999999999999999996665554
No 105
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=2.6e-12 Score=120.20 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=94.0
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
+..+...++.+|||+|||+|..+..+++. .+.+|+++|+++.+++.++++++..|+. +++++++|+.++.+.++||+
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~ 321 (445)
T PRK14904 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDA 321 (445)
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCE
Confidence 34556778899999999999999888875 3468999999999999999999999984 79999999988775678999
Q ss_pred EEEccc------hh-------hhCHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEM------ME-------AVGHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~------l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++... +. +.+++ ....++..+.+.|+|||+++.++++..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 997421 11 11111 234689999999999999999887754
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=3.3e-12 Score=118.89 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=93.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~ 135 (288)
.++..+++.++.+|||+|||+|..+..+++. .+.+|+++|+++.+++.++++++..|+ +++++++|+.+.+ ..+
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccC
Confidence 4455677788999999999999999999987 346999999999999999999999887 3789999998764 246
Q ss_pred CCCEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecC
Q 048309 136 KYDRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 136 ~fD~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+||.|++...+... .++ ...+++..+.++|||||.+++++++.
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 89999965432210 111 13578999999999999999987653
No 107
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.43 E-value=1.5e-12 Score=116.42 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------CCCCceEEEEcccCCC------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA---------GLQDHIRLYLCDYRQL------PK 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------g~~~~v~~~~~d~~~~------~~ 133 (288)
++.+|||+|||-|+....+....-..++|+|+++..++.|+++.+.. ...-...++.+|.... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999999888887764568999999999999999999321 1112467788887642 22
Q ss_pred -CCCCCEEEEccchhhh--CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 -AKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 -~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
...||+|-|.+++|+. +.+....+++++...|+|||+|+.+++.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999999998 6677888999999999999999996654
No 108
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=6.1e-13 Score=110.67 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=92.1
Q ss_pred EEEEECCcccHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C-CCCCCCEEEEc
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P-KAKKYDRIISC 143 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~-~~~~fD~I~~~ 143 (288)
+|||||||.|.....+.+. +. -.|.++|.||.+++..+++..... .++...+.|+... + ..+++|.|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999999886 33 689999999999999988765443 4566666666542 2 56899999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcc
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDAR 182 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 182 (288)
+++..++++.....+++++++|||||.+++.+.+..+..
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla 190 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA 190 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHH
Confidence 999999999999999999999999999999998876644
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.42 E-value=4.1e-12 Score=115.66 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
..+..+++.+. ++.+|||+|||+|.++..+++. ++++|+|+|+|+.+++.|+++++..+. +++++++|+.+..
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~ 315 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP 315 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc
Confidence 33444555443 5569999999999999999876 678999999999999999999988775 7999999996643
Q ss_pred CCCCCCEEEEccchhh-----h------------------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEA-----V------------------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~-----~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..++||+|+|+...-. . +.+.+..+++.+.+.|+|||.+++..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3468999999764310 0 00224567888889999999988743
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=1.9e-12 Score=113.65 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=82.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
-.+++.+ ..++.+|||+|||+|.+++..++....+|+|+|++|.+++.|+++++.+++..++.+. ...+. ..++||
T Consensus 152 l~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~d 227 (295)
T PF06325_consen 152 LELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VEGKFD 227 (295)
T ss_dssp HHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EE
T ss_pred HHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCC
Confidence 3344444 3467899999999999999988864458999999999999999999999997766553 22222 348999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+++-... -+..++..+.+.|+|||.++++-+-
T Consensus 228 lvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 228 LVVANILAD-----VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred EEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 999975433 3467888899999999999997654
No 111
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=3.2e-12 Score=118.78 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=95.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
+...+++.++.+|||+|||+|..+..++.. .+.+|+++|+++.+++.++++++..|+. +++++++|+..++ ..++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDT 307 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhcc
Confidence 334567788999999999999999999886 3569999999999999999999999984 6999999998875 4578
Q ss_pred CCEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||.|++...+... +++ ...+++.++.+.|||||.++.++++..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999985433211 111 235679999999999999999888744
No 112
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.40 E-value=5.2e-12 Score=110.22 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=92.6
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~ 139 (288)
..+.++++.+|||+|||+|..+..+++. ....|+++|+++.+++.++++++..|+ .+++++..|...++ ..++||+
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCE
Confidence 4456778999999999999999999876 235899999999999999999999998 47999999988766 4467999
Q ss_pred EEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++....... .++ ...++++.+.++|||||+++.++.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9975432211 111 234589999999999999998876643
No 113
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.40 E-value=1.9e-12 Score=107.83 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=77.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC--CCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP--KAKK 136 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~--~~~~ 136 (288)
.+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+++++++.+++. +++++++|+.+ ++ .+++
T Consensus 6 ~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 6 SILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred HHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCC
Confidence 344444 36779999999999999988876567899999999999887642 46888899876 32 4678
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhccccc
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkp 167 (288)
||+|++..+++|+ .++..+++++.+.+++
T Consensus 76 fD~Vi~~~~l~~~--~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 76 FDYVILSQTLQAT--RNPEEILDEMLRVGRH 104 (194)
T ss_pred cCEEEEhhHhHcC--cCHHHHHHHHHHhCCe
Confidence 9999999999999 7788899988776553
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=6.8e-12 Score=102.23 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
+.+++.+...++.+|||+|||+|.++..++++ +.+++++|+++.+++.+++++... ++++++.+|+.+++ .+.+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCC
Confidence 46778888888899999999999999999987 779999999999999999887542 47999999999987 44579
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|.|+++..++ +..+....+++.. .+.++|.++++.
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 9999876654 3323344444332 245788888743
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.39 E-value=1.1e-11 Score=108.00 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC---C-CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL---P-KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---~-~~~~ 136 (288)
+.+.++++.+|||+|||+|.++..++... ...|+++|+++.+.+...+.++.. .|+.++.+|+... . ...+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 44567899999999999999999999873 458999999998765555544332 4789999998642 1 3468
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|++... . +.+...++.++.++|||||.|++.
T Consensus 203 vDvV~~Dva--~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVA--Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCC--C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 999999764 1 245566777899999999999993
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=6e-12 Score=119.14 Aligned_cols=107 Identities=20% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.|++++...++.++++++.+|+.+....++||+|+|+...-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3468999999999999999876 678999999999999999999998888778999999986533456899999964221
Q ss_pred --------------hh----------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 148 --------------AV----------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 --------------~~----------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|- +.+.+..+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 10 01234567888999999999999853
No 117
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.38 E-value=1.3e-11 Score=106.38 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=94.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..++......+..+|+|||+|.|.++..+++. ++.+++.+|+ |+.++.+++ .++++++.+|+. -+.+. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc-c
Confidence 44556667777789999999999999999988 9999999998 889988887 268999999998 33334 9
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccC--cEEEEEeecCCCc
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKD--GLLVLQFSSTPDA 181 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~~~~~ 181 (288)
|+++...++|+.++++-..+++++++.|+|| |+++|.+...++.
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9999999999999999999999999999999 9999988876554
No 118
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=7.6e-12 Score=117.10 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=93.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~ 135 (288)
.+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|+. +++++++|+.++. ..+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcc
Confidence 3445667778899999999999999999886 3579999999999999999999999985 6999999998764 237
Q ss_pred CCCEEEEccchhhh-------------CHhh-------HHHHHHHHhcccccCcEEEEEeecC
Q 048309 136 KYDRIISCEMMEAV-------------GHEY-------MEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 136 ~fD~I~~~~~l~~~-------------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+||+|++....... ++.+ ...+++.+.++|||||.++.++.+.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 89999986432211 0111 2468999999999999999876553
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.38 E-value=5.3e-12 Score=92.61 Aligned_cols=101 Identities=27% Similarity=0.471 Sum_probs=85.4
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhh
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
+++|+|||+|..+..+++....+++++|+++.++..+++.....+. .+++++..|+.+.. ..+++|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999875567999999999999998864443333 57999999998876 46789999999999883
Q ss_pred CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
......+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 278899999999999999999875
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.37 E-value=8.6e-12 Score=116.11 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=94.1
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KA 134 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~ 134 (288)
..++..+++.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++..|+..++.+..+|....+ ..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 44556677888999999999999999999886 447999999999999999999999988533444667765543 35
Q ss_pred CCCCEEEEcc------chhhhCH-------h-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 KKYDRIISCE------MMEAVGH-------E-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 ~~fD~I~~~~------~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++||.|++.. ++.+.+. + ...+++.++.++|||||.++.++++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 7899999742 3333211 1 1367899999999999999998877543
No 121
>PRK00811 spermidine synthase; Provisional
Probab=99.37 E-value=5.1e-12 Score=111.26 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=84.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C--CCceEEEEcccCCCC--CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L--QDHIRLYLCDYRQLP--KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~--~~~v~~~~~d~~~~~--~~~~fD~I 140 (288)
+.+.+||+||||+|..+..++++ ...+|++||+++.+++.|++.+...+ . .++++++.+|+..+. ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999887 44689999999999999999886431 1 358999999998754 46789999
Q ss_pred EEccchhhhCHh--hHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++..+-...+.. ...++++.+.+.|+|||++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 997543322111 1367899999999999999874
No 122
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.37 E-value=2.3e-12 Score=104.10 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=72.7
Q ss_pred EEEcCCHHHHHHHHHHHHHc--CCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 96 TGITLSAEQMKYAEMKVNEA--GLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 96 ~giD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
+|+|+|++|++.|+++.+.. +...+++++++|+.+++ .+++||+|++..+++++ +++.+++++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEE
Confidence 58999999999998776532 22247999999999998 67899999999999999 788999999999999999999
Q ss_pred EEeecCCCc
Q 048309 173 LQFSSTPDA 181 (288)
Q Consensus 173 ~~~~~~~~~ 181 (288)
+.++..+..
T Consensus 79 i~d~~~~~~ 87 (160)
T PLN02232 79 ILDFNKSNQ 87 (160)
T ss_pred EEECCCCCh
Confidence 998886654
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.37 E-value=6.4e-12 Score=104.17 Aligned_cols=106 Identities=16% Similarity=0.242 Sum_probs=78.0
Q ss_pred HHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 58 HSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 58 ~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
+..+.+.. .+.++.+|||+|||+|.++..+++. ...+|+++|+++.+ .. .+++++++|+.+..
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHH
Confidence 33444433 4578899999999999999988876 34589999999854 12 36788999987632
Q ss_pred -------CCCCCCEEEEccc--------hhhh-CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -------KAKKYDRIISCEM--------MEAV-GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -------~~~~fD~I~~~~~--------l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.++||+|++..+ +.|. ..+....++..+.++|+|||++++..
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3468999998643 2222 11235789999999999999999864
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=9.1e-12 Score=116.17 Aligned_cols=117 Identities=18% Similarity=0.182 Sum_probs=94.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----C
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----K 133 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~ 133 (288)
+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|+. +++++++|+.+++ .
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccc
Confidence 445567788999999999999999999886 2358999999999999999999999984 7999999998764 2
Q ss_pred CCCCCEEEEcc------chhhhC-------Hhh-------HHHHHHHHhcccccCcEEEEEeecC
Q 048309 134 AKKYDRIISCE------MMEAVG-------HEY-------MEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 134 ~~~fD~I~~~~------~l~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.++||.|++.. ++.+-+ +++ ..+++.++.++|||||+++.++++.
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 46899999753 332221 111 4678999999999999999887664
No 125
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-11 Score=104.07 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..++..+++.+|.+|+|.|.|+|.++..|+.. +..+|+.+|+.++..+.|+++++..++.+++++..+|+.+......
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 56788899999999999999999999999975 5579999999999999999999999997779999999999875569
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
||+|+.. + +++-.+++++.+.|+|||.+++
T Consensus 164 vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 164 VDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred cCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEE
Confidence 9999984 3 6778999999999999999987
No 126
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.36 E-value=1.8e-13 Score=112.85 Aligned_cols=117 Identities=24% Similarity=0.410 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.++..++..++..+=.++||+|||||..+..+... ..+++|+|+|+.|++.|.++ |+. -+..++|...+.
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~ 184 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL 184 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc
Confidence 45566777777666689999999999999988765 56899999999999998765 332 244555554332
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.+..||+|++..++.++ .+++.++.-+...|+|||.|.++.-..+..
T Consensus 185 ~~er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 185 TQERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred cCCcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 46799999999999999 789999999999999999999977665553
No 127
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=2.9e-11 Score=101.26 Aligned_cols=120 Identities=23% Similarity=0.229 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-ccc
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDY 128 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~ 128 (288)
.++...+..+++.. ++++|||||++.|..+..+|.. + ..++|+||.++++.+.|++++++.|+.++++.+. +|.
T Consensus 45 ~e~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 56666666666654 6789999999999999999988 4 5789999999999999999999999988899999 577
Q ss_pred CCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 129 RQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 129 ~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+.- ..++||+|+... .+.++..+++.+.++|+|||++++.....+
T Consensus 122 l~~l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 6643 358999999853 336778999999999999999998765443
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=99.35 E-value=8.7e-12 Score=107.48 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..+.+|||+|||+|.++..++.+ .+.+|+|+|+++.+++.++++. ++++++++|+.++...++||+|+++..+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 34569999999999999988776 4579999999999999998763 3689999999987755789999999988
Q ss_pred hhhCHhh------------------HHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEY------------------MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+.+..+ ..++++....+|+|+|.+++.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 8763321 246777888899999977765
No 129
>PLN02476 O-methyltransferase
Probab=99.35 E-value=3.9e-11 Score=104.32 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
.+...+.+.+..+++.. ++++||||||++|..+..++.. .+.+++++|.+++..+.|+++++..|+.++++++.+
T Consensus 101 ~v~~~~g~lL~~L~~~~---~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 101 QVSPDQAQLLAMLVQIL---GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred ccCHHHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 34556666666666654 4679999999999999999885 356899999999999999999999999889999999
Q ss_pred ccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+.- ..++||+|+.... +.++..+++.+.++|+|||.+++....
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 997632 1368999998743 367889999999999999999986543
No 130
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.35 E-value=1.3e-11 Score=103.28 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
.+...+.+.+..+++..+ .++||||||++|..+..+++. .+++|+.+|.+++..+.|++.++..|+.++++++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 456667777777777654 569999999999999999986 367999999999999999999999999889999999
Q ss_pred ccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+.- ..++||+|+.... +.++..+++.+.++|+|||++++....
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ccHhhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 997632 1358999998753 356788999999999999999986543
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.34 E-value=2.7e-11 Score=104.82 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=85.9
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.++.++..+.. .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.++ ++++++|+.+..
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcch
Confidence 33444444432 23458999999999999999876 56799999999999999999998765 478999987643
Q ss_pred -CCCCCCEEEEccchh------hhCH------------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMME------AVGH------------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~------~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..++||+|+++.... .+++ +....+++.+.++|+|||.+++..
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 236799999986432 1111 124578888899999999999864
No 132
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.34 E-value=3.2e-12 Score=110.43 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=101.3
Q ss_pred HHHHhhhhhcCCCCCCCHHHHHHH----------HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCH
Q 048309 33 QAHRNISYHYDLDEDEDLKVAQMR----------KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSA 102 (288)
Q Consensus 33 ~~~~~~a~~Yd~~~~~~l~~a~~~----------~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~ 102 (288)
+.-..+++||+.-.....+..+.. ++...|=..-.+++..++|+|||-|+.++.+-+..-..++|+|++.
T Consensus 71 ~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAe 150 (389)
T KOG1975|consen 71 SKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAE 150 (389)
T ss_pred chhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhh
Confidence 336678888886533233322222 2233232233467889999999999988888766446899999999
Q ss_pred HHHHHHHHHHHHcCCCC-----ceEEEEcccCC------CC-CCCCCCEEEEccchhhh--CHhhHHHHHHHHhcccccC
Q 048309 103 EQMKYAEMKVNEAGLQD-----HIRLYLCDYRQ------LP-KAKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 103 ~~~~~a~~~~~~~g~~~-----~v~~~~~d~~~------~~-~~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~Lkpg 168 (288)
..++.|+++.+...-.. .+.++.+|... ++ .+.+||+|-|.+++|+. +.+...-+++++...|+||
T Consensus 151 vSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 151 VSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred ccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 99999999987542211 26888888754 22 23349999999999876 5567788999999999999
Q ss_pred cEEEE
Q 048309 169 GLLVL 173 (288)
Q Consensus 169 G~l~~ 173 (288)
|+++-
T Consensus 231 G~FIg 235 (389)
T KOG1975|consen 231 GVFIG 235 (389)
T ss_pred cEEEE
Confidence 99996
No 133
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.33 E-value=2e-11 Score=111.92 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=86.5
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+++. .+++++++|+.++. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999988776653458999999999999999999999985 47999999998753 2468999999
Q ss_pred ccchhhhCH-------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 143 CEMMEAVGH-------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 143 ~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
......-+. ..+..++..+.++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 865321111 2456677788999999999997553
No 134
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=1.9e-11 Score=120.16 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=88.1
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++++|+.++. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999863347999999999999999999999985 57999999987643 3568999999753
Q ss_pred hh-------hh--CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 146 ME-------AV--GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 146 l~-------~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.. .. ...+...++..+.++|+|||.+++.+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21 00 114567889999999999999988654
No 135
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4e-11 Score=105.18 Aligned_cols=103 Identities=22% Similarity=0.424 Sum_probs=83.4
Q ss_pred EEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch---h
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM---E 147 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l---~ 147 (288)
+|||+|||+|..++.++.. +.++|+|+|+|+.+++.|+++++.+++ .++.++.+|+.+-.. ++||+|+|+... .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999999998 557999999999999999999999998 577777777665433 499999998532 0
Q ss_pred --hh------------------CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 148 --AV------------------GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 --~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+. +.+....++.++.+.|+|||.+++...
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 11 113456788899999999999998654
No 136
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.30 E-value=5.6e-11 Score=102.02 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=111.6
Q ss_pred hhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--c
Q 048309 14 KVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--T 91 (288)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~ 91 (288)
.++.++.-..+..+.++.-......+...... .......+.+.+..+++..+ .++|||||+++|..+..++.. .
T Consensus 28 ~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~-~~~~~~~~g~lL~~l~~~~~---ak~iLEiGT~~GySal~la~al~~ 103 (247)
T PLN02589 28 ALYQYILETSVYPREPESMKELRELTAKHPWN-IMTTSADEGQFLNMLLKLIN---AKNTMEIGVYTGYSLLATALALPE 103 (247)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHhcCCC-CCccCHHHHHHHHHHHHHhC---CCEEEEEeChhhHHHHHHHhhCCC
Confidence 45555544333334444433333333333221 12334566677777776654 569999999999999999875 4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----C----CCCCCEEEEccchhhhCHhhHHHHHHHHhc
Q 048309 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----K----AKKYDRIISCEMMEAVGHEYMEEYFGCCES 163 (288)
Q Consensus 92 ~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~ 163 (288)
+.+++++|.+++..+.|++.++..|+.++|+++.+|+.+.- . .++||+|+...- +..+..+++.+.+
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ 178 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLID 178 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHH
Confidence 67999999999999999999999999899999999997742 1 268999998743 3567889999999
Q ss_pred ccccCcEEEEEee
Q 048309 164 LLAKDGLLVLQFS 176 (288)
Q Consensus 164 ~LkpgG~l~~~~~ 176 (288)
+|+|||++++...
T Consensus 179 ll~~GGviv~DNv 191 (247)
T PLN02589 179 LVKVGGVIGYDNT 191 (247)
T ss_pred hcCCCeEEEEcCC
Confidence 9999999988543
No 137
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.29 E-value=5.5e-12 Score=105.07 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=76.0
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~ 150 (288)
.++|+|||+|..++-++.++ .+|+|+|+|++|++.+++.....-..........++.++. .+++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 79999999998888888874 5899999999999988876432211112233334444554 57999999999999998
Q ss_pred HhhHHHHHHHHhcccccCc-EEEEEe
Q 048309 151 HEYMEEYFGCCESLLAKDG-LLVLQF 175 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG-~l~~~~ 175 (288)
+.+.+++.+.++||+.| .+.+-.
T Consensus 114 --dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 114 --DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred --chHHHHHHHHHHcCCCCCEEEEEE
Confidence 67999999999998766 655533
No 138
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.29 E-value=2.2e-11 Score=100.97 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCC------CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 53 AQMRKHSLLIEKARVS------KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~------~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
.-.+--..++..+... ...+.||.|+|.|+.+..+....-.+|..+|+.+..++.|++.+.... ..-.++.+.
T Consensus 33 ~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~ 111 (218)
T PF05891_consen 33 IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCV 111 (218)
T ss_dssp HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEec
Confidence 3334444556655433 356899999999999998866545689999999999999997765421 234689999
Q ss_pred ccCCCCC-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 127 DYRQLPK-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 127 d~~~~~~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.++++.| .++||+|++.+++.|+++++..++|++|...|+|+|.+++-+.....
T Consensus 112 gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 112 GLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp -GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred CHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 9999874 57999999999999999999999999999999999999998766543
No 139
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.28 E-value=8.6e-11 Score=97.90 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
.++.+|||+|||+|.++..++.+...+|+++|.++.+++.++++++..++. +++++++|+.+.. ..++||+|+++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 457799999999999998755554569999999999999999999998874 7999999997643 3457999999987
Q ss_pred hhhhCHhhHHHHHHHHh--cccccCcEEEEEeec
Q 048309 146 MEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSS 177 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 177 (288)
+.. ......++.+. .+|+|+|.+++++..
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 432 22344445444 458999999997654
No 140
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.28 E-value=1.8e-10 Score=95.00 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=94.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---C-
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---K- 133 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~- 133 (288)
-.+++..-...+.+|||||||||..+.+++++ +.....-.|.++......+..+...+++.-...+..|+.+.+ .
T Consensus 15 l~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 15 LEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred HHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence 33444433333436999999999999999999 888899999999998888888888887533346677776653 1
Q ss_pred -----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 -----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 -----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.++||+|+|.+++|-++.+..+.+++.+.++|++||.|++--
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 358999999999999999999999999999999999999843
No 141
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.28 E-value=8.2e-11 Score=110.10 Aligned_cols=115 Identities=16% Similarity=0.278 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.......+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ .+++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhh
Confidence 3445667777777778899999999999999999986 57999999999999999999998888 47999999997532
Q ss_pred ----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 ----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+++||+|+++..-.-+ ...++.+.+ ++|++.+++++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEeC
Confidence 24679999997654322 344444444 689999888753
No 142
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.27 E-value=5.9e-11 Score=106.26 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=84.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
..+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.+++ .+++++++|+.++. ..++
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~ 240 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEV 240 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCC
Confidence 34444444345689999999999999999985 68999999999999999999999998 58999999998764 3457
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
||+|++...-.-+. ..+. ++...++|++.+++++..
T Consensus 241 ~D~Vv~dPPr~G~~----~~~~-~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 241 PDLVLVNPPRRGIG----KELC-DYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CeEEEECCCCCCcc----HHHH-HHHHHcCCCeEEEEECCc
Confidence 99999985532221 1222 223446788888876543
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.27 E-value=7e-11 Score=103.49 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=82.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCCC--CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
+.+.+||+||||+|..+..++++. ..+++++|+++++++.+++.+...+ + ..+++++.+|...+- ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999999988873 5689999999999999999875432 1 247889998886643 357999999
Q ss_pred EccchhhhCHhh--HHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEY--MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+......-+... ..++++.+.+.|+|||++++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 976532221122 468899999999999999985
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.24 E-value=5e-11 Score=99.16 Aligned_cols=104 Identities=27% Similarity=0.376 Sum_probs=83.5
Q ss_pred CEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C---CCCCCCEEEEccc
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P---KAKKYDRIISCEM 145 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~---~~~~fD~I~~~~~ 145 (288)
..+||||||.|.++..+|.. +...++|+|++...+..+.+++...++ +|+.++++|+..+ . +++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999998 999999999999999999999999998 5999999999883 2 5689999999887
Q ss_pred hhhhCHhh------HHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAVGHEY------MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-.+..... -..+++.+.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 65542111 3679999999999999998854
No 145
>PLN02366 spermidine synthase
Probab=99.23 E-value=1.7e-10 Score=102.39 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=84.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCC---CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLP---KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~---~~~~fD~I 140 (288)
+.+++||+||||.|..+..+++++ ..+|+.+|+++.+++.|++.+... ++ .++++++.+|+..+- +.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999874 368999999999999999987653 22 358999999986543 25689999
Q ss_pred EEccchhhhCHh--hHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++...-.+.+.. --.++++.+.+.|+|||+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 997544322111 1367899999999999998764
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=99.22 E-value=9.4e-11 Score=98.92 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
.+.+|||+|||+|.++..+++. ...+|+++|+++.+++.|+++.. ++.++++|+...+.+++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999998874 24589999999999999997752 4789999998766557999999997
Q ss_pred chhhhC----------HhhHHHHHHHHhcccccCcEEEE
Q 048309 145 MMEAVG----------HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 145 ~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+.-.. ......+++++.+++++|+. ++
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 665321 12245688888886666664 44
No 147
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=1.3e-10 Score=99.46 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--L 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~ 131 (288)
.-+..++..+++.||.+|||.|.|+|.++..+++. +..+|+..|..++..+.|+++++..|+++++++.+.|+.. +
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34567888999999999999999999999999986 5679999999999999999999999998899999999975 2
Q ss_pred C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhccc-ccCcEEEEEe
Q 048309 132 P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL-AKDGLLVLQF 175 (288)
Q Consensus 132 ~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 175 (288)
+ .+..+|+|+..- +++-.++..+.+.| ++||++++-.
T Consensus 107 ~~~~~~~~DavfLDl-------p~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 107 DEELESDFDAVFLDL-------PDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp STT-TTSEEEEEEES-------SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccccCcccEEEEeC-------CCHHHHHHHHHHHHhcCCceEEEEC
Confidence 2 246899999853 44556777788999 8999998743
No 148
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=2.6e-10 Score=102.04 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=81.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHH-----HHcCC-CCceEEEEcccCCCC--CCCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKV-----NEAGL-QDHIRLYLCDYRQLP--KAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~-----~~~g~-~~~v~~~~~d~~~~~--~~~~fD 138 (288)
..+.+||+||||+|..+..++++ +..+|++||+++++++.|++.. ...++ .++++++.+|+.++. ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45579999999999999999887 4479999999999999999621 11122 368999999999854 557899
Q ss_pred EEEEccchh---hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 139 RIISCEMME---AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 139 ~I~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|++...-. ....-.-.++++.+.+.|+|||++++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999984311 111112367999999999999998875
No 149
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=7.7e-10 Score=93.89 Aligned_cols=119 Identities=19% Similarity=0.310 Sum_probs=91.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----C-
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----P- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~- 132 (288)
..+.......+..+||+|||+|..+..++.. +.+.|+++|.|+.++..|.++++..++.+++.++.-+++.- +
T Consensus 139 d~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l 218 (328)
T KOG2904|consen 139 DALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL 218 (328)
T ss_pred HHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc
Confidence 3333333445668999999999999999988 88899999999999999999999999988999997766542 1
Q ss_pred CCCCCCEEEEccchh-h-----h------------------CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 KAKKYDRIISCEMME-A-----V------------------GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~-~-----~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
..++.|+++|+...- + + +-.....++.-+.|.|+|||.+.+.....
T Consensus 219 ~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 219 LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 458999999985321 0 0 01334556777889999999999976643
No 150
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.18 E-value=4e-10 Score=103.10 Aligned_cols=110 Identities=15% Similarity=0.239 Sum_probs=85.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
..+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.++++ +++++.+|+.++. ...+
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~ 300 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSA 300 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCC
Confidence 34444444345679999999999999999975 679999999999999999999999984 8999999997754 2356
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++...-..+. ..+++.+. .++|++.+++++
T Consensus 301 ~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 301 PELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 99999987654332 33444443 479999988865
No 151
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.1e-10 Score=89.23 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=69.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
+...+.-.|.+|+|+|||||.++...+-....+|+|+|+++++++.+++++++.+ .+++++++|+.++. ..+|.++
T Consensus 38 a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~--~~~dtvi 113 (198)
T COG2263 38 AYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR--GKFDTVI 113 (198)
T ss_pred HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC--CccceEE
Confidence 3344555788999999999999998877655799999999999999999998833 68999999999976 6789999
Q ss_pred Eccchh
Q 048309 142 SCEMME 147 (288)
Q Consensus 142 ~~~~l~ 147 (288)
.+..+.
T Consensus 114 mNPPFG 119 (198)
T COG2263 114 MNPPFG 119 (198)
T ss_pred ECCCCc
Confidence 887664
No 152
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=1.7e-10 Score=109.75 Aligned_cols=108 Identities=25% Similarity=0.241 Sum_probs=83.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHH--HHHc---CC-CCceEEEEcccCCCC--CCCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMK--VNEA---GL-QDHIRLYLCDYRQLP--KAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~--~~~~---g~-~~~v~~~~~d~~~~~--~~~~fD 138 (288)
+++++|||||||+|..+..+++++. .+++++|+++++++.++++ +... .+ .++++++.+|..++. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999988744 6999999999999999983 2211 12 247999999998753 457999
Q ss_pred EEEEccchhhhCH---hhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGH---EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|++.......+. -...++++.+.+.|+|||+++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999865332210 112568999999999999999864
No 153
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.11 E-value=4.5e-10 Score=95.14 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=90.1
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~ 144 (288)
...+||||||.|.+...+|++ |...++|||+....+..|.+.+.+.+++ |+.+++.|+..+- ++++.|-|+.++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 358999999999999999998 8899999999999999999999999985 9999999998743 556999999988
Q ss_pred chhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.--|.... -...+++.+.+.|+|||.+.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 76554111 13679999999999999999843
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.11 E-value=1.3e-09 Score=89.18 Aligned_cols=109 Identities=17% Similarity=0.301 Sum_probs=78.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCceEEEEcccCCCC-----CCCCC
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--LQDHIRLYLCDYRQLP-----KAKKY 137 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~-----~~~~f 137 (288)
...++.+|||+|||+|..++.++.. ...+|+..|.++ .++.++.+++.++ ...++.+...|..+.. ...+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3457889999999999999999987 578999999988 9999999999876 5568899998886521 34689
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+|++..+++.- +..+.+++.+.++|+++|.+++....
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999999876 78899999999999999997775543
No 155
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=7.2e-10 Score=111.66 Aligned_cols=110 Identities=21% Similarity=0.395 Sum_probs=85.5
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------CceEEEEcccCCCCC
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQ---------------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~---------------~~v~~~~~d~~~~~~ 133 (288)
+.+|||+|||+|..++.+++. +..+|+|+|+|+.+++.|+++++.+++. ++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999987 5579999999999999999999876432 479999999987542
Q ss_pred --CCCCCEEEEccch------hhhC------------------------------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 --AKKYDRIISCEMM------EAVG------------------------------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 --~~~fD~I~~~~~l------~~~~------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+||+|+++... ..+. -.-+..+++++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2379999997531 1110 0123667888889999999999876
Q ss_pred ecCC
Q 048309 176 SSTP 179 (288)
Q Consensus 176 ~~~~ 179 (288)
....
T Consensus 279 G~~q 282 (1082)
T PLN02672 279 GGRP 282 (1082)
T ss_pred CccH
Confidence 5433
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.10 E-value=1.2e-09 Score=102.00 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
...+..+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++++.+++ .+++++.+|+.+..
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHH
Confidence 344556667777777889999999999999999986 56899999999999999999999888 58999999997631
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+||+|++...-..+ ...+++.+. .++|++.+++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC----AAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC----CHHHHHHHH-hcCCCEEEEEcC
Confidence 24579999986542221 244455444 378998877743
No 157
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.09 E-value=8.5e-10 Score=97.11 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=84.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
.+-.++.|||+|||+|.++...|+....+|+++|.|. +.+.|++.+..+++.+.++++.+.++++. |..+.|+|++-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3457899999999999999999998667899999655 66999999999999888999999999987 568999999965
Q ss_pred chhhhC-HhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVG-HEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.=+.+- ..-+..++-.=-++|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 433331 1223444444458999999875
No 158
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.08 E-value=7.9e-10 Score=102.84 Aligned_cols=103 Identities=19% Similarity=0.344 Sum_probs=78.5
Q ss_pred CCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+..|+|+|||+|-++...++. ...+|++||-++.++...++++..+++.++|+++.+|++++..+.++|+||+-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 568999999999998776654 236899999999999888888888899889999999999999667999999843
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.=.....+-..+.+....+.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2111111455677888899999999765
No 159
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.08 E-value=8.3e-10 Score=91.66 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHcCCCCCCEEEEECCcccH----HHHHHHHc----c--CCEEEEEcCCHHHHHHHHHHH----HHcCC---------
Q 048309 61 LIEKARVSKEHEVLEIGCGWGT----FAIEVVRQ----T--GCNYTGITLSAEQMKYAEMKV----NEAGL--------- 117 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~----~--~~~v~giD~s~~~~~~a~~~~----~~~g~--------- 117 (288)
+++.....+.-+|+..||++|. +++.+.+. . ..+|+|.|+|+.+++.|++-. .-.++
T Consensus 23 ~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 23 LLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp -----CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred hccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 3333333456799999999995 44555441 1 358999999999999998521 00011
Q ss_pred --------------CCceEEEEcccCC-CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 118 --------------QDHIRLYLCDYRQ-LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 118 --------------~~~v~~~~~d~~~-~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+|+|...|+.+ .+..+.||+|+|-+++-++.++....+++++++.|+|||.|++.
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1579999999999 44778999999999999998889999999999999999999983
No 160
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.07 E-value=3.7e-09 Score=87.60 Aligned_cols=106 Identities=9% Similarity=-0.000 Sum_probs=81.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCC-CCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAK-KYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~-~fD~I~~~ 143 (288)
.+.+|||++||+|.++..++++...+|+++|.++.+++.++++++..++..+++++.+|+.+.. ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 5789999999999999999997445899999999999999999999988668999999996531 122 47888887
Q ss_pred cchhhhCHhhHHHHHHHH--hcccccCcEEEEEeec
Q 048309 144 EMMEAVGHEYMEEYFGCC--ESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 177 (288)
..+.. ......++.+ ..+|+++|.+++....
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 66542 2233444433 3579999998887544
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.07 E-value=1.3e-09 Score=96.30 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..+..+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.+.+. .
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P 100 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence 45667888888888999999999999999999986 678999999999999999998877655689999999988763 3
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
.||.|+++...+
T Consensus 101 ~~d~VvaNlPY~ 112 (294)
T PTZ00338 101 YFDVCVANVPYQ 112 (294)
T ss_pred ccCEEEecCCcc
Confidence 689999875544
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.06 E-value=2e-09 Score=95.76 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=66.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEc-ccCCCC-----CCCCCCEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLC-DYRQLP-----KAKKYDRI 140 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~-d~~~~~-----~~~~fD~I 140 (288)
++.++||||||+|.....++.+ ++++++|+|+++.+++.|+++++.+ ++.++++++.. |..++. ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999888877766 7889999999999999999999999 78878888653 333221 35689999
Q ss_pred EEccchhhh
Q 048309 141 ISCEMMEAV 149 (288)
Q Consensus 141 ~~~~~l~~~ 149 (288)
+|+..++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999887654
No 163
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.05 E-value=3.2e-09 Score=87.24 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=85.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCN---------YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~---------v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
..++.....+++..|||.-||+|++.+..+.. .... ++|.|+++.+++.|+++++..++...+.+.+.|+
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 44566667788899999999999999887765 3444 8899999999999999999999988899999999
Q ss_pred CCCC-CCCCCCEEEEccchhhh-C-----HhhHHHHHHHHhcccccCcEEEE
Q 048309 129 RQLP-KAKKYDRIISCEMMEAV-G-----HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 129 ~~~~-~~~~fD~I~~~~~l~~~-~-----~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+++ ..+++|+|+++..+..- + ..-+..+++++.++|++..++++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999 77899999998765432 1 13356778999999999444443
No 164
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.05 E-value=2.4e-09 Score=94.71 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=93.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC-CCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP-KAKKY 137 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~-~~~~f 137 (288)
.+++....++|..|||--||||++.+...- .|++++|+|++..|++-|+.+++..+++ ...+... |+..++ +..++
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~v 265 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNSV 265 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCcc
Confidence 445556678999999999999999998776 5999999999999999999999999875 4555555 999999 55579
Q ss_pred CEEEEccchhhhC-------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|+|++.....-.+ .+-+.++++.++++|++||++++...
T Consensus 266 daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 266 DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999976442211 13478899999999999999998443
No 165
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.04 E-value=2e-09 Score=93.79 Aligned_cols=105 Identities=22% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
-.++.|||+|||+|.++...++....+|.+|+. .+|.+.|++.++.+.+.++|.++.+.++++..+++.|+|++-.+=.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 467899999999999999988876678999995 6799999999999999999999999999999779999999864432
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-+-.+.+.+-.-.++++|+|.|.++=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 22113344444456699999998874
No 166
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=91.06 Aligned_cols=106 Identities=18% Similarity=0.396 Sum_probs=77.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC------------------------------
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG------------------------------ 116 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g------------------------------ 116 (288)
-.+..+|||||..|.++..+|+. ....+.|+|+++..++.|++.++.-.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35678999999999999999998 44579999999999999998765310
Q ss_pred ----CCCceEEEE-------cccCCCCCCCCCCEEEEccchh--hh--CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 117 ----LQDHIRLYL-------CDYRQLPKAKKYDRIISCEMME--AV--GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 117 ----~~~~v~~~~-------~d~~~~~~~~~fD~I~~~~~l~--~~--~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++.++.+.. .|+.+. ....||+|+|..+-- |+ +++-+..+++++.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111 122211 346899999976533 33 4567899999999999999999984
No 167
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.03 E-value=3.1e-09 Score=96.59 Aligned_cols=109 Identities=24% Similarity=0.268 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
.|++|||+-|=||.++.+.|.. |+ +||+||+|...++.|+++++.+|++ .++.++++|+.++- ...+||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3899999999999999999986 55 9999999999999999999999984 45899999998854 445999999
Q ss_pred Eccchhh------h-CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 142 SCEMMEA------V-GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 142 ~~~~l~~------~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
....-.. . ...++..++..+.++|+|||.+++.+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8642110 0 12567889999999999999999976553
No 168
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.03 E-value=2.2e-09 Score=93.40 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.++..++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++.. . ++++++++|+.+++. .
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-~ 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-P 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-h
Confidence 45667788888888999999999999999999997 67999999999999999988754 2 579999999998773 2
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
.||.|+++..++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 589999986654
No 169
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.6e-09 Score=82.24 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=99.1
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 38 ISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 38 ~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
++..|+..++..+ -...++.-...+.......++|||||+|..+..+++. ++..+.++|++|.+.+...+.++.+
T Consensus 15 f~dVYEPaEDTFl---LlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 15 FSDVYEPAEDTFL---LLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhhccCccchhhH---HHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc
Confidence 3467887644322 2222222233333334678999999999999999987 6678999999999999999999988
Q ss_pred CCCCceEEEEcccCCCCCCCCCCEEEEccchh----------hh---------CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 116 GLQDHIRLYLCDYRQLPKAKKYDRIISCEMME----------AV---------GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 116 g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~----------~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+. +++.++.|+.+--..++.|+++.+.... .+ +.+-...++.++-.+|.|.|++++...
T Consensus 92 ~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 92 RV--HIDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CC--ccceeehhHHhhhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 86 5899999998866448999999875331 11 223356788888899999999999665
Q ss_pred c
Q 048309 177 S 177 (288)
Q Consensus 177 ~ 177 (288)
.
T Consensus 170 ~ 170 (209)
T KOG3191|consen 170 R 170 (209)
T ss_pred h
Confidence 4
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.00 E-value=2.4e-09 Score=93.88 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC-
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK- 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~- 135 (288)
....+++.+...++.+|||||||+|.++..++++ +.+|+|+|+++.+++.+++++.. ++++++++|+.+++.+.
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence 4567778888888899999999999999999997 45999999999999999887643 47999999999987322
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
..|.|+++....
T Consensus 105 ~~~~vv~NlPY~ 116 (272)
T PRK00274 105 QPLKVVANLPYN 116 (272)
T ss_pred CcceEEEeCCcc
Confidence 258888876543
No 171
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=1.3e-08 Score=85.19 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=107.9
Q ss_pred chhhhhhhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcC---CCC--CCEEEEECCcccH
Q 048309 8 LDALVSKVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKAR---VSK--EHEVLEIGCGWGT 82 (288)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~---~~~--~~~vLDiGcG~G~ 82 (288)
.+....++-+++.+|. .+...|+.....+. ..-..+++++.+. ..+ +.+++|||+|.|-
T Consensus 17 ~~~~~~~l~~Y~~lL~-------------~wN~~~NLt~~~~~---~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGf 80 (215)
T COG0357 17 TEEQLEKLEAYVELLL-------------KWNKAYNLTAIRDP---EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGF 80 (215)
T ss_pred cHHHHHHHHHHHHHHH-------------HhhHhcCCCCCCCH---HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCC
Confidence 3455666777776654 44556666533333 3334455555543 222 5799999999999
Q ss_pred HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC-CCEEEEccchhhhCHhhHHHHHHH
Q 048309 83 FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK-YDRIISCEMMEAVGHEYMEEYFGC 160 (288)
Q Consensus 83 ~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~-fD~I~~~~~l~~~~~~~~~~~l~~ 160 (288)
.+..+|-. +..+||-+|....-+...+....+.++ +|++++++-++++..... ||+|+|-.+ ..+..+.+-
T Consensus 81 PGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRAv------a~L~~l~e~ 153 (215)
T COG0357 81 PGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRAV------ASLNVLLEL 153 (215)
T ss_pred chhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeehc------cchHHHHHH
Confidence 99998844 778899999999999999999999999 489999999999884344 999999644 566788888
Q ss_pred HhcccccCcEEEE
Q 048309 161 CESLLAKDGLLVL 173 (288)
Q Consensus 161 ~~~~LkpgG~l~~ 173 (288)
+..++++||.+++
T Consensus 154 ~~pllk~~g~~~~ 166 (215)
T COG0357 154 CLPLLKVGGGFLA 166 (215)
T ss_pred HHHhcccCCcchh
Confidence 9999999998765
No 172
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=1.9e-08 Score=83.68 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=119.3
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcC-CCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCC
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYD-LDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGC 93 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd-~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~ 93 (288)
++..--.|..++++.-.+..+....+- ........+.+.+.+..+++..+ ++++||||.=||..+..+|.. .+.
T Consensus 23 ~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~---ak~~lelGvfTGySaL~~Alalp~dG 99 (237)
T KOG1663|consen 23 QYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLN---AKRTLELGVFTGYSALAVALALPEDG 99 (237)
T ss_pred hhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhC---CceEEEEecccCHHHHHHHHhcCCCc
Confidence 333333456788887777777665552 22344566777788888888765 569999999999888888776 567
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccc
Q 048309 94 NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA 166 (288)
Q Consensus 94 ~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk 166 (288)
+|+++|+++...+.+.+..+.+|+..+|++++++..+. . ..++||.++.. |.. .+...++.++.+++|
T Consensus 100 rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr 174 (237)
T KOG1663|consen 100 RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVD----ADK-DNYSNYYERLLRLLR 174 (237)
T ss_pred eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEc----cch-HHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998762 1 46899999974 332 456689999999999
Q ss_pred cCcEEEEEeecC
Q 048309 167 KDGLLVLQFSST 178 (288)
Q Consensus 167 pgG~l~~~~~~~ 178 (288)
+||++++.....
T Consensus 175 ~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 175 VGGVIVVDNVLW 186 (237)
T ss_pred cccEEEEecccc
Confidence 999999965433
No 173
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.97 E-value=3.9e-09 Score=89.71 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=76.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
...++||||.|.|..+..++.. -.+|++.|.|+.|....++ .|. +++ |..++. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999886 4589999999999655443 343 333 334444 457899999999999
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.. ..+..+++.+++.|+|+|++++...
T Consensus 163 Rc--~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 163 RC--DRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred cc--CCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 88 7889999999999999999998653
No 174
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.96 E-value=1.2e-08 Score=88.55 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.+...++.+|||||||+|.++..+++. ...++++|+++.+++.+++++.. .++++++.+|+.+.+..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 45567788888888899999999999999999987 45799999999999999887643 25799999999988732
Q ss_pred CCC---EEEEccch
Q 048309 136 KYD---RIISCEMM 146 (288)
Q Consensus 136 ~fD---~I~~~~~l 146 (288)
++| .|+++..+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 466 77776543
No 175
>PLN02823 spermine synthase
Probab=98.95 E-value=1.1e-08 Score=91.74 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=82.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCCC--CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQLP--KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~~--~~~~fD~I~~ 142 (288)
.+++||.||+|.|..+..++++ ...+|+.||+++++++.|++.+...+ + .++++++.+|...+- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999999886 45689999999999999999875321 1 368999999998864 5578999998
Q ss_pred ccchhh--hCHh--hHHHHHH-HHhcccccCcEEEEEe
Q 048309 143 CEMMEA--VGHE--YMEEYFG-CCESLLAKDGLLVLQF 175 (288)
Q Consensus 143 ~~~l~~--~~~~--~~~~~l~-~~~~~LkpgG~l~~~~ 175 (288)
...-.. -+.. --.++++ .+.+.|+|||++++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 742110 0000 1246787 8999999999988754
No 176
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.95 E-value=2.1e-09 Score=94.17 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=83.4
Q ss_pred CCEEEEECCcccH----HHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH------------------HH-----cC-
Q 048309 70 EHEVLEIGCGWGT----FAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKV------------------NE-----AG- 116 (288)
Q Consensus 70 ~~~vLDiGcG~G~----~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~------------------~~-----~g- 116 (288)
.-+|+..||+||. +++.+.+. ...+|+|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 44444442 1357999999999999998642 00 01
Q ss_pred ------CCCceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 117 ------LQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 117 ------~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+...|+|.+.|+.+.+ +.+.||+|+|.+++.|++++....+++++.+.|+|||.|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 2256789999998754 358999999999999998889999999999999999999884
No 177
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.95 E-value=1.4e-08 Score=94.91 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEE
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
++.++.+|||+++|.|+-+.+++.. ....++++|+++..++..++++++.|+ .++.+...|...+. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 6679999999999999999999886 235899999999999999999999999 47999999988765 456899999
Q ss_pred Eccchh------h-------hCHhh-------HHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 142 SCEMME------A-------VGHEY-------MEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 142 ~~~~l~------~-------~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
....+. . .++++ ..+++..+.++|||||+++.++++...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 654332 1 11111 256889999999999999998877443
No 178
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.95 E-value=6e-09 Score=98.83 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 048309 48 EDLKVAQMRKHSLLIEKARV-------SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQD 119 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~ 119 (288)
..+.+.|.+.++.....+.+ ..+..+||||||.|.++..+|.. +...++|+|++...+..+.+.+...++ .
T Consensus 319 ~~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~ 397 (506)
T PRK01544 319 KSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-T 397 (506)
T ss_pred CCCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-C
Confidence 35666776666555544322 24568999999999999999998 888999999999999999888888888 5
Q ss_pred ceEEEEcccCCCC---CCCCCCEEEEccchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 120 HIRLYLCDYRQLP---KAKKYDRIISCEMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 120 ~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+.++..|+..+. +++++|.|+.++.-.|.... --..+++.+.+.|+|||.+.+.+
T Consensus 398 N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 398 NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8999998876443 66889999998876554111 13678999999999999999843
No 179
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.95 E-value=2e-09 Score=89.49 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..++..|+|+.||.|.++..+|+. .++.|+++|++|.+++..+++++.+++..++.++++|..++...+.+|.|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 457899999999999999999984 4678999999999999999999999999889999999999876789999998643
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
- .-..++..+.+++++||.+.
T Consensus 179 ~------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEE
T ss_pred H------HHHHHHHHHHHHhcCCcEEE
Confidence 2 22357777889999998764
No 180
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.94 E-value=6e-09 Score=91.17 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~----~~~~fD~I~~~ 143 (288)
.+++|||+-|=||.++...+.....+|++||.|..+++.++++++.++++ .+++++++|+.++- ..++||+|++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 57899999999999999988753348999999999999999999999985 67999999997742 35699999996
Q ss_pred cchhh---h-CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 144 EMMEA---V-GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~---~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..-.. . -..++..++..+.++|+|||.+++.+.+
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 43110 0 0156788999999999999998876543
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.94 E-value=1.1e-08 Score=80.84 Aligned_cols=114 Identities=17% Similarity=0.085 Sum_probs=97.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.+.++...+...|.-|||+|.|||-++..+.++ ....++.+|.|++.+....+... .++++.+|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 345667778888999999999999999999887 55689999999999998887763 4679999998764
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+..||.|+|.-.+--++.....++++++...|.+||.++-.+.+
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 567899999998888888788899999999999999999987766
No 182
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.93 E-value=4.2e-09 Score=86.71 Aligned_cols=109 Identities=23% Similarity=0.337 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
-++.+|||+-||+|.++...+++...+|+.||.++..++..+++++..+...+++++.+|....- ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36889999999999999999888556999999999999999999999988767999999975432 4689999999
Q ss_pred ccchhhhCHhhHHHHHHHHh--cccccCcEEEEEeecC
Q 048309 143 CEMMEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSST 178 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 178 (288)
......- ......++.+. .+|+++|.+++.....
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8776643 22466777776 8999999999987554
No 183
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.92 E-value=2.3e-08 Score=82.18 Aligned_cols=128 Identities=15% Similarity=0.196 Sum_probs=94.0
Q ss_pred hhhhhcCCCCCCCHHHHHHHHHHHHHHHcC----CCCCC-EEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHH
Q 048309 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKAR----VSKEH-EVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 37 ~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~----~~~~~-~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~ 110 (288)
.+...++.....+.++. ...++++.+. +.... +++|||+|.|-.++.++-. +..+++.+|.+..-+...+.
T Consensus 14 ~~N~~~NLt~~~~~~~~---~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~ 90 (184)
T PF02527_consen 14 EWNKKINLTSIRDPEEI---WERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKE 90 (184)
T ss_dssp HHHHCSSS-S--SHHHH---HHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHH
T ss_pred HhCceeeeccCCCHHHH---HHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHH
Confidence 34445555533333332 2334555442 22233 8999999999999998776 78899999999999999999
Q ss_pred HHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 111 KVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 111 ~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.....|+ +|++++++.+++.....+||+|++-.+ ..+..+++-+...|++||.+++.
T Consensus 91 ~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~aRAv------~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 91 VVRELGL-SNVEVINGRAEEPEYRESFDVVTARAV------APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHT--SSEEEEES-HHHTTTTT-EEEEEEESS------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhCC-CCEEEEEeeecccccCCCccEEEeehh------cCHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999 489999999999336689999999754 45678889999999999999984
No 184
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.91 E-value=4.4e-09 Score=86.60 Aligned_cols=99 Identities=18% Similarity=0.311 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCC-CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 58 HSLLIEKARVSK-EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
++.+++.+...+ +..|.|+|||.+.++..+.. +..|...|+.+ .+-.+..+|+...| +++
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccCcCCCC
Confidence 356677766444 46899999999999866542 46799999865 23468889999999 889
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.|+++++.++-. .+...++.++.|+|||||.+.|.+..
T Consensus 122 svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 122 SVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp -EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEec
Confidence 9999999877655 58899999999999999999997765
No 185
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.91 E-value=1e-08 Score=86.44 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=76.8
Q ss_pred HHHHHHcCCCCC-CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 59 SLLIEKARVSKE-HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~-~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
+.+++.+...++ ..|.|+|||-+.++. .....|+.+|+.+ .+-+++.+|+.+.| .+++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~s 228 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDES 228 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCCcCccCc
Confidence 556666654444 578899999988765 2346899999855 25688999999999 8899
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.|+++++.++-- .++..++.++.|+|++||.+.|..+.
T Consensus 229 vDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 229 VDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehh
Confidence 999998866544 68899999999999999999997654
No 186
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.90 E-value=1.7e-08 Score=88.30 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQL 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~ 131 (288)
..+.++.-.....+ ++||-||.|.|..++.+.++ .-.+++.||++++.++.|++.+.... . .++++++.+|..++
T Consensus 64 Eml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 64 EMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 33333333334444 69999999999999999998 45799999999999999999886443 2 37899999999886
Q ss_pred C--CCCCCCEEEEccchhhhCHh---hHHHHHHHHhcccccCcEEEEE
Q 048309 132 P--KAKKYDRIISCEMMEAVGHE---YMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 ~--~~~~fD~I~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
- ...+||+|++..+-. .++. .-..+++.|.+.|+++|+++..
T Consensus 143 v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 5 345899999976543 2211 1378999999999999999987
No 187
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.89 E-value=2.2e-08 Score=86.77 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHHHHHH-----cCCC---------------
Q 048309 69 KEHEVLEIGCGWGT----FAIEVVRQ-T-----GCNYTGITLSAEQMKYAEMKVNE-----AGLQ--------------- 118 (288)
Q Consensus 69 ~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~giD~s~~~~~~a~~~~~~-----~g~~--------------- 118 (288)
..-+|+-.||+||. +++.+.+. + ..+|+|.|+|..+++.|+.-.-. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999995 45555544 2 46899999999999999853211 1221
Q ss_pred --------CceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 119 --------DHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 119 --------~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..|.|...|+.+-+ ..+.||+|+|-+++-++..+....++++.+..|+|||+|++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45778888887766 678899999999999998888999999999999999999993
No 188
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.1e-08 Score=83.83 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=84.7
Q ss_pred HHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCceE
Q 048309 57 KHSLLIEKAR--VSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAG--------L-QDHIR 122 (288)
Q Consensus 57 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g--------~-~~~v~ 122 (288)
....+++.+. +.||.++||+|+|+|+++.-++.- .+..++|||.-++.++.++++++..- + ..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3345566665 679999999999999998887753 45456999999999999999886532 1 14678
Q ss_pred EEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 123 LYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 123 ~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++++|..... ...+||.|.+.... .+..+++...|++||.+++-.
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEee
Confidence 9999998866 67899999997433 334445568899999999843
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.88 E-value=1.4e-08 Score=92.87 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=81.2
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CCCCCEEEEccchh
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AKKYDRIISCEMME 147 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~l~ 147 (288)
+.+|||++||+|..++.++.. ...+|+++|+++.+++.++++++.+++. ++++.++|+..+.. .+.||+|++...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 468999999999999999876 3348999999999999999999999884 67899999976542 467999998742
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.....++..+.+.+++||.++++
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22356777767888999999996
No 190
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.84 E-value=4e-08 Score=89.26 Aligned_cols=112 Identities=11% Similarity=0.195 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK- 133 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~- 133 (288)
...+..+++.+...+ .+|||++||+|.++..+++. ..+|+|+|+++++++.++++++.+++. +++++.+|+.++..
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHH
Confidence 344455666655333 47999999999999999886 459999999999999999999999984 79999999976431
Q ss_pred ----------C------CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 ----------A------KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ----------~------~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. ..||+|+....=.- ....+++.+.+ |++.+++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCC----CcHHHHHHHHc---CCcEEEEEcC
Confidence 1 13899998765221 12344444433 7888888653
No 191
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=7.2e-09 Score=85.87 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=88.1
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhh
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEA 148 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~ 148 (288)
-..++|||||.|.+...+....-.+++-+|.|..|++.|+.. +..++ .+...++|-+.++ .++++|+|++..++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 457999999999999999887445899999999999988764 33444 4678889999888 7899999999999999
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+ .+++..+.+|...|||+|.|+.+-++
T Consensus 150 ~--NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 150 T--NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred h--ccCchHHHHHHHhcCCCccchhHHhc
Confidence 9 88999999999999999999875544
No 192
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.84 E-value=5.1e-08 Score=88.90 Aligned_cols=111 Identities=14% Similarity=0.276 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~ 133 (288)
..+..+.+.+... +.+|||++||+|.++..+++. ..+|+|+|.++.+++.+++++..+++ .+++++.+|+.++. .
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHH
Confidence 3445555555432 357999999999999999886 45899999999999999999999998 48999999997632 1
Q ss_pred ---------------CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 ---------------AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ---------------~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+||+|+....-.-+ ....++.+.+ |++.+++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEeC
Confidence 1258999998663222 2444444443 6888887653
No 193
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.83 E-value=3.4e-08 Score=82.59 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHH-------HcCC-CC
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVN-------EAGL-QD 119 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~-------~~g~-~~ 119 (288)
...+-....+..+++.+++.++..++|||||.|....+.|...+++ .+|||+.+...+.|+...+ ..|. ..
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred ceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3334444667778889999999999999999999988887765554 9999999999887775433 2232 35
Q ss_pred ceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 120 HIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 120 ~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++++..+|+.+.+ .-...|+|++++.+- + ++....+.+....||+|.+++.
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 6888999987754 125689999987653 2 4556666777788999988765
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.83 E-value=1.5e-07 Score=81.25 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=91.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
.+-+||||.||.|......... +. .+|...|.|+..++..++.+++.|+.+-++|.++|+.+.. ..-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5569999999999998887766 43 6899999999999999999999999766699999998754 345689999
Q ss_pred EccchhhhCHhh-HHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.++.++.+++.+ ....++.+.+.+.|||+++..
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 999999997655 566799999999999999974
No 195
>PRK04148 hypothetical protein; Provisional
Probab=98.81 E-value=9.2e-08 Score=73.98 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=74.4
Q ss_pred HHHHcCCCCCCEEEEECCcccH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~f 137 (288)
+.+.+....+.+++|||||+|. ++..|++. +.+|+++|+++..++.+++. .++++.+|+.+.. .-+.+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcC
Confidence 4455544566899999999996 88888875 88999999999998888665 3689999999876 45789
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+|++.-. +.++...+.++.+.+ |.-+++...+.
T Consensus 79 ~liysirp-----p~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRP-----PRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCC-----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 99998643 244445554554433 56677755543
No 196
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.80 E-value=2.4e-08 Score=86.13 Aligned_cols=122 Identities=24% Similarity=0.243 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCceEEEEccc
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGL---QDHIRLYLCDY 128 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~---~~~v~~~~~d~ 128 (288)
.+.+.+.++.-.... .+++||-||.|.|..+..+.+++ ..++++||+++.+++.|++.+..... .++++++.+|.
T Consensus 61 ~y~e~l~h~~~~~~~-~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHP-NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHHHSS-ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHHhhhHhhcCC-CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 344455444444433 57799999999999999999873 56999999999999999998764321 35899999999
Q ss_pred CCCC--CCC-CCCEEEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEe
Q 048309 129 RQLP--KAK-KYDRIISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 129 ~~~~--~~~-~fD~I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+- ..+ +||+|+....-...+.. --.++++.+.+.|+|||++++..
T Consensus 140 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8754 334 89999986543222111 13689999999999999999866
No 197
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.2e-08 Score=89.31 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
......+..+++.+...++.++||+=||.|.++..+|++ ..+|+|+|+++++++.|+++++.+++. |++|..++.+++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~ 353 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHH
Confidence 344556677888888888899999999999999999975 679999999999999999999999995 699999999997
Q ss_pred C-C---CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 P-K---AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 ~-~---~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. . ...+|+|+....=.-+. ..+++.+ ..++|-..+++++.
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~~----~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGAD----REVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred hhhccccCCCCEEEECCCCCCCC----HHHHHHH-HhcCCCcEEEEeCC
Confidence 6 2 35889999875433331 2333333 55678888888654
No 198
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=1.5e-08 Score=86.93 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=98.8
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~ 111 (288)
-..|+.++.|........+ .+...+++... .+..++|+|||.|..... .+.+.++|.|++...+..+++.
T Consensus 15 h~IYd~ia~~fs~tr~~~W-----p~v~qfl~~~~--~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 15 HSIYDKIATHFSATRAAPW-----PMVRQFLDSQP--TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred HHHHHHhhhhccccccCcc-----HHHHHHHhccC--CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC
Confidence 4478888877665422222 23344444443 478999999999976432 2678899999999988877653
Q ss_pred HHHcCCCCce-EEEEcccCCCC-CCCCCCEEEEccchhhh-CHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 112 VNEAGLQDHI-RLYLCDYRQLP-KAKKYDRIISCEMMEAV-GHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 112 ~~~~g~~~~v-~~~~~d~~~~~-~~~~fD~I~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+. ....+|+..++ ...+||.+++..++||+ +......+++++.+.|+|||...+..+...
T Consensus 85 --------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 85 --------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred --------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 23 68899999999 78999999999999999 445678899999999999999888776643
No 199
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.76 E-value=2.3e-07 Score=75.60 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=90.4
Q ss_pred HHHHHcCC--CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CC-
Q 048309 60 LLIEKARV--SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KA- 134 (288)
Q Consensus 60 ~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~- 134 (288)
.+...+.. -.|.++||+-+|+|.++...+++....++.||.+...+...+++++..++..+++++..|..... ..
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~ 111 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT 111 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC
Confidence 34444443 47899999999999999999998667999999999999999999999997788999999998542 22
Q ss_pred -CCCCEEEEccchhhhCHhhHHHHHH--HHhcccccCcEEEEEeec
Q 048309 135 -KKYDRIISCEMMEAVGHEYMEEYFG--CCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 -~~fD~I~~~~~l~~~~~~~~~~~l~--~~~~~LkpgG~l~~~~~~ 177 (288)
+.||+|+....++.= --+....+. .-..+|+|+|.+++..-.
T Consensus 112 ~~~FDlVflDPPy~~~-l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 112 REPFDLVFLDPPYAKG-LLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCcccEEEeCCCCccc-hhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 359999999887621 111122222 246889999999997654
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=6.4e-08 Score=83.09 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..++.+++.+++.++..|||||+|.|.++..|++. +.+|+++|+++.+++..++.... ..|++++.+|+...+.+.
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchh
Confidence 34778899999888999999999999999999997 77899999999999999988752 268999999999988444
Q ss_pred --CCCEEEEccch
Q 048309 136 --KYDRIISCEMM 146 (288)
Q Consensus 136 --~fD~I~~~~~l 146 (288)
.++.|+++-..
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 78999987543
No 201
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.75 E-value=9e-08 Score=81.33 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCce-EEEEcccCCCC
Q 048309 55 MRKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHI-RLYLCDYRQLP 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v-~~~~~d~~~~~ 132 (288)
..++..+++...+ .++.+|||+|||+|.++..+++....+|+|+|+++.|+... .... .++ .+...|+....
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCC
Confidence 3455677777664 46789999999999999999987446899999999887651 1111 122 23333444322
Q ss_pred ------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 ------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-..+|++++.. ...+..+.+.|+| |.+++
T Consensus 134 ~~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred HhHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 112455555432 2346777888999 77665
No 202
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.9e-08 Score=76.56 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
++.-+-...+--.|+.++|+|||.|.++...+.-....|+|+|++|++++++++++++..+ ++.++++|+.++. ..+
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCC
Confidence 3334444455457889999999999999666554445799999999999999999998876 5799999999987 568
Q ss_pred CCCEEEEccchhh
Q 048309 136 KYDRIISCEMMEA 148 (288)
Q Consensus 136 ~fD~I~~~~~l~~ 148 (288)
.||.++.+..+..
T Consensus 114 ~fDtaviNppFGT 126 (185)
T KOG3420|consen 114 IFDTAVINPPFGT 126 (185)
T ss_pred eEeeEEecCCCCc
Confidence 8999999877653
No 203
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.74 E-value=4e-08 Score=86.42 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.+..+++.+.+.++..++|.+||.|+.+..+++.. ..+|+|+|.++.+++.+++++.. .++++++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence 46778888888889999999999999999999873 47999999999999999988765 258999999999875
Q ss_pred CCC---CCCEEEEccch
Q 048309 133 KAK---KYDRIISCEMM 146 (288)
Q Consensus 133 ~~~---~fD~I~~~~~l 146 (288)
... ++|.|++...+
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 222 79999987544
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.73 E-value=7.1e-08 Score=82.03 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..++.+++..+++++..|||+|.|||.++..+.+. +.+|+++|+++.|+....++.+......+.+++.+|+...+. .
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-P 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-c
Confidence 35578889999999999999999999999999996 889999999999999999998766666889999999998772 3
Q ss_pred CCCEEEEccch
Q 048309 136 KYDRIISCEMM 146 (288)
Q Consensus 136 ~fD~I~~~~~l 146 (288)
.||.++++-..
T Consensus 123 ~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 RFDGCVSNLPY 133 (315)
T ss_pred ccceeeccCCc
Confidence 79999986433
No 205
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.72 E-value=9.6e-09 Score=85.41 Aligned_cols=112 Identities=22% Similarity=0.335 Sum_probs=85.9
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCceEEEEcccCCCC---CCCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGL-QDHIRLYLCDYRQLP---KAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~-~~~v~~~~~d~~~~~---~~~~f 137 (288)
.....+.|.+|||...|-|+.++..+++ |+ +|..++.+|..++.|+-+-=..++ ..+++++.+|+.+.- .+.+|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3345667999999999999999999987 55 999999999999888755322222 235899999998754 67889
Q ss_pred CEEEEccc-hhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEM-MEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+|+-... +.+.+.---.++.++++++|||||.++--+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 99997643 333332345789999999999999988533
No 206
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.3e-07 Score=84.47 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=93.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC-CCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA-KKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~fD 138 (288)
++++... +|.+|+|+-+|.|.+++.+|+....+|+++|++|.+++..+++++.+++...+..+++|.....+. +.+|
T Consensus 181 Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 181 RVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence 3444443 599999999999999999999733349999999999999999999999987799999999998844 8999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
-|++... .....++..+.+.+++||.+........+
T Consensus 259 rIim~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 259 RIIMGLP------KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred EEEeCCC------CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 9998743 23356777788899999998887765443
No 207
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.70 E-value=2.7e-08 Score=79.70 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=56.7
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC-CCCEEEEcc
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK-KYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~-~fD~I~~~~ 144 (288)
..|+|+.||.|+.++++|+. ..+|++||+++..++.|+.+++-.|+.++++++++|+.++. ... .+|+|++..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999996 66999999999999999999999999889999999998864 111 289999864
No 208
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=6.8e-07 Score=81.19 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=93.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KA 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~ 134 (288)
....+++.+|.+|||+.++.|+=+.++++. . +..|+++|.++.-++..++++++.|+. ++.++..|...++ ..
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccc
Confidence 345678889999999999999999999887 2 456799999999999999999999994 6889999987654 22
Q ss_pred -CCCCEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 -KKYDRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 -~~fD~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++||.|+....+.-. ++. -..+++..+.++|||||.++.++++...
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 359999986433211 111 2356889999999999999999887544
No 209
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.66 E-value=7e-08 Score=87.25 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=99.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
...++..++|+|||.|....+++....+.++|+|.++..+..+.......++..+..++..|+...+ .+..||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4567779999999999999999887678999999999999999888888888777788889999988 889999999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+.+|. ++...++++++++++|||+++..++...
T Consensus 187 ~~~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHA--PDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccC--CcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 99999 7899999999999999999999776543
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.65 E-value=5.2e-07 Score=89.06 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=87.3
Q ss_pred HHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-----c--------------------------------------CCE
Q 048309 59 SLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-----T--------------------------------------GCN 94 (288)
Q Consensus 59 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-----~--------------------------------------~~~ 94 (288)
..++...+. .++..++|.+||+|++.+..|.. + ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 445555554 56789999999999999887652 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C--CCCCCEEEEccchhhh--CHhhHHHHHHHHhcccc---
Q 048309 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K--AKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLA--- 166 (288)
Q Consensus 95 v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~--~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~Lk--- 166 (288)
++|+|+++.+++.|++++..+|+.+.+++.++|+.+++ + .+++|+|+++..+..- ...+...+...+.+.++
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999878999999999876 2 3579999999765332 12344455555444444
Q ss_pred cCcEEEEEee
Q 048309 167 KDGLLVLQFS 176 (288)
Q Consensus 167 pgG~l~~~~~ 176 (288)
+|+.+++.+.
T Consensus 339 ~g~~~~llt~ 348 (702)
T PRK11783 339 GGWNAALFSS 348 (702)
T ss_pred CCCeEEEEeC
Confidence 8888877443
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=98.64 E-value=4.1e-07 Score=78.71 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=75.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+.+++||-||.|.|..++.+.+++ .+|+.||+++++++.|++.+... ++ .++++++.. +.+. ..++||+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 456899999999999999999985 49999999999999999955432 12 357777762 2111 347899999875
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.. ...+++.+.+.|+|||.++.+.
T Consensus 148 ~~-------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 EP-------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-------ChHHHHHHHHhcCCCcEEEECC
Confidence 31 2678899999999999999853
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.64 E-value=5.7e-07 Score=78.88 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
.+.+..+...+..-.+.+|||+|||+|..+-.+... .-.+++++|.|+.|++.++..++...-............+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 344455555554445679999999999866554443 235799999999999999998765422111111111111111
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.-...|+|++.++|..++.+....+++++.+.+++ .+++.+.+.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 22344999999999999767788888888887766 78877766654
No 213
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.62 E-value=9.4e-07 Score=78.75 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=86.7
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE--EEEcccCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR--LYLCDYRQL 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~--~~~~d~~~~ 131 (288)
..+++.+ .++..++|+|||.|.=+..|.+. ....++++|+|.++++.+.+.+....++ .++ -+++|+.+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHH
Confidence 4455554 36678999999999977766554 2467999999999999999998744443 454 488888663
Q ss_pred ----C---CCCCCCEEEEcc-chhhhCHhhHHHHHHHHhc-ccccCcEEEEEe
Q 048309 132 ----P---KAKKYDRIISCE-MMEAVGHEYMEEYFGCCES-LLAKDGLLVLQF 175 (288)
Q Consensus 132 ----~---~~~~fD~I~~~~-~l~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~ 175 (288)
+ ......+++..+ ++..+++++...+++++++ .|+|||.|++..
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2 123467777765 7888888889999999999 999999999843
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.61 E-value=6.7e-08 Score=79.51 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=72.5
Q ss_pred HHHHHHHHHcC-CCC--CCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 56 RKHSLLIEKAR-VSK--EHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 56 ~~~~~l~~~~~-~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
-++.++.+..+ ..+ +.+|||+||++|+++..+.++. ..+|+|+|+.+. ... .++..+++|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 36667777777 444 4899999999999999999874 479999999875 111 356777777654
Q ss_pred CC---------C--CCCCCEEEEccchhhhC---------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 131 LP---------K--AKKYDRIISCEMMEAVG---------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 131 ~~---------~--~~~fD~I~~~~~l~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.. . .+.+|+|+|..+....+ .+-....+.-+...|+|||.+++..+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 1 26899999987322211 123344555667889999999986655
No 215
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.8e-07 Score=76.13 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=89.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
+..++..+...||.+|+|-|+|+|.++..+++. +-.++..+|..+...+.|.+-+++.|+++++++..-|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 367888999999999999999999999999987 557999999999999999999999999999999999998855
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
....+|+|+..-. .+-.++-.+...||.+|.-++
T Consensus 174 ks~~aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 KSLKADAVFLDLP-------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccceEEEcCC-------ChhhhhhhhHHHhhhcCceEE
Confidence 3578999998643 233344444567877764333
No 216
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.58 E-value=8e-07 Score=70.10 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHH-----ccCCEEEEEcCCHHHHHHHHHHHHHcC--CCCceEEEEcccCCCCCCCCCCE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVR-----QTGCNYTGITLSAEQMKYAEMKVNEAG--LQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~v~giD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..+..+|+|+|||.|+++..++. .++.+|++||.++..++.+.++.+..+ +..++++..++..+.......++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 35678999999999999999998 678899999999999999999988776 44567777777766555577888
Q ss_pred EEEccchhhhC
Q 048309 140 IISCEMMEAVG 150 (288)
Q Consensus 140 I~~~~~l~~~~ 150 (288)
++...+...++
T Consensus 103 ~vgLHaCG~Ls 113 (141)
T PF13679_consen 103 LVGLHACGDLS 113 (141)
T ss_pred EEEeecccchH
Confidence 88876665554
No 217
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.57 E-value=7.7e-07 Score=78.75 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=85.7
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
...+|+|.|.|..+..+...+ .+|-+++.+...+..+...+. .| |+.+-+|+.+-.| +-|+|++.++++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP--KGDAIWMKWILHDWT 250 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CC----cceecccccccCC--CcCeEEEEeecccCC
Confidence 789999999999999998863 358899988888777766654 33 6778888866432 456999999999999
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+++..+++++|...|+|||.+++.+...|.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 999999999999999999999999887665
No 218
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.57 E-value=5.8e-07 Score=77.33 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcCCCCC-CEEEEECCcc--cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 51 KVAQMRKHSLLIEKARVSKE-HEVLEIGCGW--GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 51 ~~a~~~~~~~l~~~~~~~~~-~~vLDiGcG~--G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
..+.+.++.+.++.+....| ..+||||||- -.+...+|+. +.++|+-+|.+|-.+..++..+....- ....+++
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 34556666777777655434 5799999994 4456677765 889999999999999999998876532 2389999
Q ss_pred cccCCCC-------CCCCCC-----EEEEccchhhhCH-hhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 126 CDYRQLP-------KAKKYD-----RIISCEMMEAVGH-EYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 126 ~d~~~~~-------~~~~fD-----~I~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+|+.+.. ..+-+| .++...+++|+++ +++..+++.+...|.||..|+++..+..
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 9998743 112333 6778889999965 6899999999999999999999887754
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.57 E-value=1.5e-06 Score=78.32 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC---------------------------------C-------EEEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG---------------------------------C-------NYTG 97 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---------------------------------~-------~v~g 97 (288)
...++...+-.++..++|-=||+|++.+..|.... . .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34566777777888999999999999998877510 1 3779
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC-CCCCEEEEccchhh-hC-H---h-hHHHHHHHHhcccccCcE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA-KKYDRIISCEMMEA-VG-H---E-YMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~l~~-~~-~---~-~~~~~l~~~~~~LkpgG~ 170 (288)
+|+++.+++.|+.+++.+|+.+.|+|.++|+.++..+ +.+|+|+|+....- ++ + + -+..+.+.+.+.++.-+.
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999844 89999999875421 11 1 1 234555566677777777
Q ss_pred EEEE
Q 048309 171 LVLQ 174 (288)
Q Consensus 171 l~~~ 174 (288)
+++.
T Consensus 340 ~v~t 343 (381)
T COG0116 340 YVFT 343 (381)
T ss_pred EEEE
Confidence 7773
No 220
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.55 E-value=5.1e-07 Score=82.01 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
......+..+++.++..++ +|||+-||.|.++..+|.. ..+|+|||+++++++.|+++++.+++ .|++++.++++++
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccch
Confidence 3445566778888887666 8999999999999999986 66999999999999999999999999 5899999887654
Q ss_pred C-----------------CCCCCCEEEEccchhhh
Q 048309 132 P-----------------KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 132 ~-----------------~~~~fD~I~~~~~l~~~ 149 (288)
. ....+|+|+....=.-+
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 2 12368999887544444
No 221
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.52 E-value=1.1e-06 Score=80.24 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=82.7
Q ss_pred CCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
+.+|||+.||+|..++.++.+ ...+|+++|+++.+++.++++++.+++. +++++++|+..+. ....||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 458999999999999999987 2368999999999999999999998874 7899999998765 346799999865
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+ . ....++..+.+.+++||.++++
T Consensus 123 f-G----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F-G----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-C----CcHHHHHHHHHhcccCCEEEEE
Confidence 2 2 2357888888999999999995
No 222
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.51 E-value=2.4e-06 Score=74.06 Aligned_cols=102 Identities=21% Similarity=0.355 Sum_probs=80.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH---c------------------------------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE---A------------------------------ 115 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~------------------------------ 115 (288)
...+||--|||.|+++..+|.. |..+.|.|.|-.|+-..+-.+.. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3578999999999999999997 88999999999997554433221 0
Q ss_pred ------CCCCceEEEEcccCCCC-C---CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 116 ------GLQDHIRLYLCDYRQLP-K---AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 116 ------g~~~~v~~~~~d~~~~~-~---~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..+.++....+|+.++- . .++||+|++.+.+... .+.-++++.+.++|||||..+-
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe
Confidence 01135677788887765 3 3799999999888877 8999999999999999997664
No 223
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.45 E-value=2.9e-06 Score=73.79 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCC---CCEEEEECCcc-cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCceEEE
Q 048309 52 VAQMRKHSLLIEKARVSK---EHEVLEIGCGW-GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVN-EAGLQDHIRLY 124 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~---~~~vLDiGcG~-G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~-~~g~~~~v~~~ 124 (288)
..+.+..+.-++.+.... +.+|+=||||. -..++.+++. .+..|+++|+++++++.+++.+. ..|+..+++++
T Consensus 100 ~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~ 179 (276)
T PF03059_consen 100 PNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFI 179 (276)
T ss_dssp HHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEE
Confidence 344444444444444333 35999999997 4555566654 46789999999999999999888 55676789999
Q ss_pred EcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 125 LCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 125 ~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|..+.. .-..||+|+...... +..++..+++.++.+.++||..+++-
T Consensus 180 ~~d~~~~~~dl~~~DvV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 180 TADVLDVTYDLKEYDVVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ES-GGGG-GG----SEEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ecchhccccccccCCEEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 99998876 447899998765443 23357899999999999999999985
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.45 E-value=4.3e-07 Score=73.21 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=80.5
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
..+.|+|.|+|.++...++. ..+|++|+.+|...+.|.+++.-.|. .|++++.+|+.++.. ...|+|+|-..--.+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 58999999999999888775 67999999999999999999877777 689999999999885 6789999843211121
Q ss_pred HhhHHHHHHHHhcccccCcEEEEE
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+..-..++.+...|+.++.++=+
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccH
Confidence 134456777888899999988743
No 225
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.45 E-value=1.1e-07 Score=87.59 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=66.1
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEE---cCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGI---TLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~gi---D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
..+||+|||+|.++.++..+ +..+..+ |..+.+++.|- +.|++. -+-......+| +++.||.|.|..++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfal----eRGvpa--~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFAL----ERGVPA--MIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhh----hcCcch--hhhhhccccccCCccchhhhhccccc
Confidence 46899999999999999886 4333332 22333444443 346542 22233346678 88999999998776
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..... +-..++-++.|+|+|||+++++..
T Consensus 192 i~W~~-~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 192 IPWHP-NDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccchh-cccceeehhhhhhccCceEEecCC
Confidence 54432 224588899999999999998543
No 226
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.1e-06 Score=70.06 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 55 MRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 55 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
..++.++.++.. +.++..|+|+|+.+|++++.+++. .+..|+|+|+.|- + .. .++.++++|+..-
T Consensus 30 a~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~--~~-~~V~~iq~d~~~~ 97 (205)
T COG0293 30 AYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K--PI-PGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c--cC-CCceEEeeeccCc
Confidence 345566666665 457899999999999999999987 3345999999772 1 22 4699999999874
Q ss_pred C---------CCCCCCEEEEccch--------hhhCH-hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 132 P---------KAKKYDRIISCEMM--------EAVGH-EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 132 ~---------~~~~fD~I~~~~~l--------~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+ ....+|+|+|...- .|... .--...+.-+..+|+|||.+++..+-...
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 3 23447999986533 44311 12244566777899999999997765443
No 227
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.40 E-value=1.8e-06 Score=77.22 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------TGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYR 129 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~ 129 (288)
..+++.+...++.+|+|.+||+|.+...+.+. ...+++|+|+++.++..|+.++.-.+... +..+..+|..
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSL 115 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TT
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccc
Confidence 34555557777889999999999998887662 46789999999999999998876655432 2468888887
Q ss_pred CCC-C--CCCCCEEEEccchhhh--CH-----------------hhHHHHHHHHhcccccCcEEEEE
Q 048309 130 QLP-K--AKKYDRIISCEMMEAV--GH-----------------EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 130 ~~~-~--~~~fD~I~~~~~l~~~--~~-----------------~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+ . ...||+|+++..+... .. ..-..++..+.+.|++||++.+.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 655 2 4799999998654322 00 11235889999999999998764
No 228
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.37 E-value=7.4e-06 Score=67.63 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
..+..+-+.+.......|.+||+||-|-|.....+-+.+..+=+.|+..|..++..+...-.. ..||-++.+-.++..
T Consensus 85 ~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl 162 (271)
T KOG1709|consen 85 RWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVL 162 (271)
T ss_pred hhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhh
Confidence 333443333333333678899999999999988887775667888999999998777654222 257888888776643
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+++.||.|+....-++. ++...+.+.+.++|||+|++-....
T Consensus 163 ~~L~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred ccccccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEEecC
Confidence 67889999987665777 8899999999999999998776443
No 229
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.36 E-value=3.3e-06 Score=74.42 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=92.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~ 135 (288)
....+.+.++..|||+.++.|+=+..+++. ....+++.|+++.-+...++++++.|+ .++.+...|..... ...
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTT
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccccccc
Confidence 344567789999999999999999999887 346999999999999999999999998 47888888887763 344
Q ss_pred CCCEEEEccchhhh------C-------H-------hhHHHHHHHHhccc----ccCcEEEEEeecCC
Q 048309 136 KYDRIISCEMMEAV------G-------H-------EYMEEYFGCCESLL----AKDGLLVLQFSSTP 179 (288)
Q Consensus 136 ~fD~I~~~~~l~~~------~-------~-------~~~~~~l~~~~~~L----kpgG~l~~~~~~~~ 179 (288)
.||.|+........ + + ....++++.+.+.+ ||||+++.++.+..
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 69999985432211 1 0 11355789999999 99999999887643
No 230
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.34 E-value=1.1e-05 Score=62.95 Aligned_cols=103 Identities=28% Similarity=0.404 Sum_probs=73.5
Q ss_pred EEEECCcccHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--CC-CC-CCCCEEEEccch
Q 048309 73 VLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--LP-KA-KKYDRIISCEMM 146 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~-~~-~~fD~I~~~~~l 146 (288)
++|+|||+|... .++.... ..++|+|+++.++..++......+. ..+.+..+|... .+ .. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 4899999999999885554433211 116888888876 55 33 489999444444
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4442 788999999999999999997766443
No 231
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.33 E-value=4.8e-06 Score=71.77 Aligned_cols=110 Identities=20% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------------------Cc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---------------------------DH 120 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---------------------------~~ 120 (288)
..|.++||||||+-..-..-|...-.+|+..|.++.-++..+++++..+-. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999844322222223347999999999998888776543210 12
Q ss_pred e-EEEEcccCCCC---C----CCCCCEEEEccchhhh--CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 121 I-RLYLCDYRQLP---K----AKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 121 v-~~~~~d~~~~~---~----~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
| +++..|+.+.+ + +.+||+|++.+.++.. ..+.+...++++.++|||||.|++....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 4 47788887754 2 2359999999999987 4467888999999999999999997654
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.31 E-value=2.8e-07 Score=68.86 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=46.6
Q ss_pred EEECCcccHHHHHHHHc--cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccch
Q 048309 74 LEIGCGWGTFAIEVVRQ--TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMM 146 (288)
Q Consensus 74 LDiGcG~G~~~~~la~~--~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l 146 (288)
||||+..|..+..+++. .. .+++++|..+. .+..++.+++.++..+++++.++..+.- ..+++|+|+..+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 69999999998888765 22 37999999996 4445555555666678999999997642 34799999988642
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. . +.....++.+.+.|+|||++++.+
T Consensus 80 ~-~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S-Y--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-H--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 1 456778899999999999999865
No 233
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.29 E-value=8.4e-06 Score=68.23 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=71.4
Q ss_pred EEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCCCCCCEEEEccchhhhC
Q 048309 73 VLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~~fD~I~~~~~l~~~~ 150 (288)
|.||||--|.+...|.++ ...+++++|+++..++.|+++++..|+.++++++.+|..+ +++.+..|+|+..++ +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 689999999999999998 3347999999999999999999999999999999999765 445455899987654 3
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..-..+++++....++....|++...
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 24456667766666666566666443
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.28 E-value=4.4e-06 Score=72.86 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA- 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~- 134 (288)
...+.+++.+++.++..|+|||+|+|.++..+++. +.+++++|+++.+++..++.+... ++++++.+|+.++...
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHH
Confidence 45678888888888999999999999999999987 589999999999999998876532 6899999999998732
Q ss_pred ---CCCCEEEEccchhhhCHhhHHHHHHHHhc
Q 048309 135 ---KKYDRIISCEMMEAVGHEYMEEYFGCCES 163 (288)
Q Consensus 135 ---~~fD~I~~~~~l~~~~~~~~~~~l~~~~~ 163 (288)
.....|+++-.. +++ ..++.++..
T Consensus 93 ~~~~~~~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp HCSSSEEEEEEEETG-TGH----HHHHHHHHH
T ss_pred hhcCCceEEEEEecc-cch----HHHHHHHhh
Confidence 355677776554 442 344544444
No 235
>PRK10742 putative methyltransferase; Provisional
Probab=98.22 E-value=6.9e-06 Score=70.04 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=75.9
Q ss_pred HHHHHHcCCCCCC--EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCceEEEEccc
Q 048309 59 SLLIEKARVSKEH--EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA------G--LQDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~------g--~~~~v~~~~~d~ 128 (288)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......++.++.. + +..+++++.+|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 6788888888887 9999999999999999996 889999999999999999888774 2 225789999999
Q ss_pred CCCC--CCCCCCEEEEccchhhh
Q 048309 129 RQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 129 ~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
.++- ...+||+|++...+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 8764 34589999998887764
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.20 E-value=1.1e-05 Score=71.76 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHcC--------CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc
Q 048309 56 RKHSLLIEKAR--------VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127 (288)
Q Consensus 56 ~~~~~l~~~~~--------~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 127 (288)
-++..++..+. +.+|.++|||||++|+++..++++ +.+|++||..+ +- ..+... ++|+.+.+|
T Consensus 190 lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~----~~L~~~---~~V~h~~~d 260 (357)
T PRK11760 190 LKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MA----QSLMDT---GQVEHLRAD 260 (357)
T ss_pred HHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cC----HhhhCC---CCEEEEecc
Confidence 35555555554 358899999999999999999997 77999999654 21 112222 579999999
Q ss_pred cCCCCC-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 128 YRQLPK-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 128 ~~~~~~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
...+.+ .+.+|.++|.-+ +.+....+-+.++|..|
T Consensus 261 ~fr~~p~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 261 GFKFRPPRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred CcccCCCCCCCCEEEEecc------cCHHHHHHHHHHHHhcC
Confidence 888763 788999999755 33455566666677655
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=6.3e-06 Score=67.10 Aligned_cols=108 Identities=16% Similarity=0.254 Sum_probs=82.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
+.+++.-..-.|++|||+|+|+|..++..++.....|+..|+.|-.+...+-+++.+|+ ++.+...|..- .+..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCccee
Confidence 44555555567899999999999999988887566899999999999999999999886 68888888877 457899
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+++...++..- ..-..++. +.+.|+..|.-++
T Consensus 145 l~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 145 LLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 99998876543 34455555 5566655555444
No 238
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.16 E-value=2.6e-05 Score=65.15 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=77.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~ 136 (288)
+.+.+++|.+||-+|..+|+...+++.- +...|.+++.|+...+..-..++.. .|+-.+..|+.... .-+.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc
Confidence 3456789999999999999999998876 4679999999998877766666655 58999999998643 3468
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.|+|++.-+ + +.+..-+..++...||+||.+++.
T Consensus 144 VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 144 VDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEEE
Confidence 999998633 2 255667888888999999999985
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.16 E-value=6.9e-07 Score=73.81 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-----CCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-----AKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~~~fD~I~~~ 143 (288)
....|+|.-||.|+.+++.+.+ ++.|++||++|.-+..|+.+++-.|++++|+|+++|+.++-. ...+|+++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4568999999999999999886 789999999999999999999999999999999999988641 2234566655
Q ss_pred cc
Q 048309 144 EM 145 (288)
Q Consensus 144 ~~ 145 (288)
..
T Consensus 173 pp 174 (263)
T KOG2730|consen 173 PP 174 (263)
T ss_pred CC
Confidence 43
No 240
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.15 E-value=5.1e-07 Score=73.88 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=74.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
.+.++||+|.|.|..+..++.. -.+|.+.++|..|....+.+ + .. +....++. .+-++|+|.|.+.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----yn--Vl~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YN--VLTEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cc--eeeehhhhhcCceeehHHHHHHHH
Confidence 4579999999999999988875 34799999999998766543 2 12 22222332 445799999998887
Q ss_pred hhCHhhHHHHHHHHhccccc-CcEEEEEeecCCCccccc
Q 048309 148 AVGHEYMEEYFGCCESLLAK-DGLLVLQFSSTPDARYNE 185 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~ 185 (288)
-. -++-.+++.++.+|+| .|++++.- +.|-..|.+
T Consensus 181 Rc--~~p~kLL~Di~~vl~psngrvivaL-VLP~~hYVE 216 (288)
T KOG3987|consen 181 RC--FDPFKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVE 216 (288)
T ss_pred hh--cChHHHHHHHHHHhccCCCcEEEEE-Eecccceee
Confidence 65 5778999999999999 78887753 334444433
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.14 E-value=2.6e-05 Score=74.82 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=58.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----C-C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-T--------GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----P-K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~--------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~-~ 133 (288)
...+|||.|||+|.+...++.. . ...++|+|+++..++.++.++...+. ..+.+.+.|.... . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 4468999999999999888765 2 14789999999999999998876652 2356666665432 1 2
Q ss_pred CCCCCEEEEccchh
Q 048309 134 AKKYDRIISCEMME 147 (288)
Q Consensus 134 ~~~fD~I~~~~~l~ 147 (288)
.+.||+|+++..+.
T Consensus 110 ~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 110 LDLFDIVITNPPYG 123 (524)
T ss_pred cCcccEEEeCCCcc
Confidence 35899999987654
No 242
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.09 E-value=2.7e-05 Score=68.39 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcccCC--C---C-CCCCCCEEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCDYRQ--L---P-KAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~--~---~-~~~~fD~I~ 141 (288)
.-++||||||....-..|+.+ .+++++|.|+++..++.|+++++.+ ++.++|+++...-.. + . ..+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 457999999987654444444 8999999999999999999999999 898899998764322 1 1 446899999
Q ss_pred Eccchhhh
Q 048309 142 SCEMMEAV 149 (288)
Q Consensus 142 ~~~~l~~~ 149 (288)
|+..++..
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99888765
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.07 E-value=1.5e-05 Score=62.57 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=51.3
Q ss_pred EEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+++|+|||.|..+..+++. +.++++++|+++.+.+.++++++.++++ ++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCC
Confidence 4899999999999999887 5568999999999999999999988874 688888877653
No 244
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.04 E-value=3.6e-05 Score=68.04 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.++.+++.+.+.++..++|.-||.|+.+..+++. +.++|+|+|.++.+++.++++++.. ..+++++++++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 5677888888889999999999999999999987 4579999999999999999988654 258999999998764
Q ss_pred ---CCCCCCEEEEccchh
Q 048309 133 ---KAKKYDRIISCEMME 147 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~ 147 (288)
...++|.|++...+.
T Consensus 86 ~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVS 103 (305)
T ss_pred HhcCCCcccEEEEeccCC
Confidence 225799999875443
No 245
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=8.9e-06 Score=75.22 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
...-+-+.++++.+..++|+.||||..+..++++ ..+|+||+++++.++.|+.++..+|+ .|++|+++-++++
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 3445567778888999999999999999999986 66999999999999999999999999 5999999966653
No 246
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.97 E-value=5.8e-05 Score=67.09 Aligned_cols=110 Identities=22% Similarity=0.223 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHH--HHc---C-CCCceEEEEcccCCCC--CCCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKV--NEA---G-LQDHIRLYLCDYRQLP--KAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~--~~~---g-~~~~v~~~~~d~~~~~--~~~~fD 138 (288)
+...+||-+|.|.|..++.+.+.| -.+++-+|++|.|++.++.+. ... . -+++++++..|+.++- ....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 345789999999999999999985 568999999999999998432 221 1 1368999999999876 567999
Q ss_pred EEEEccchh---hhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMME---AVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+....-. .++.---.++..-+.+.|+++|.++++...
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 999753211 111112366888899999999999996543
No 247
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=3e-05 Score=63.06 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=78.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHH----H--HHHHHHHHcCCCCceEEEEcccCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQM----K--YAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~----~--~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+++...+++++.+|+|+-.|.|.++..++.. +...|++.-..+... + ..+...++... .|++.+-.+...+
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~ 117 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVAL 117 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCccccc
Confidence 4666778899999999999999999999876 445777765444311 1 11111112222 3566666666555
Q ss_pred CCCCCCCEEEEccchhhh-----CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 132 PKAKKYDRIISCEMMEAV-----GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.+.+..|++......+-+ ++.....+.+.+++.|||||++++.+...
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 555777777764333222 33567889999999999999999987653
No 248
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.93 E-value=2.8e-05 Score=64.72 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=67.2
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEccch
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCEMM 146 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~~l 146 (288)
.++|||||=+..+...- ..--.|+.||+++. .-.+.++|+.+.| ..++||+|.+..++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 69999998654443322 12346999999872 3467889998865 46799999999999
Q ss_pred hhhC-HhhHHHHHHHHhcccccCcE-----EEE
Q 048309 147 EAVG-HEYMEEYFGCCESLLAKDGL-----LVL 173 (288)
Q Consensus 147 ~~~~-~~~~~~~l~~~~~~LkpgG~-----l~~ 173 (288)
..+| +..+-++++++++.|+|+|. +++
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl 147 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFL 147 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEE
Confidence 9995 67789999999999999999 776
No 249
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.92 E-value=0.00014 Score=65.90 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=90.8
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCC
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYD 138 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD 138 (288)
.+++++|.+|||+.+..|+=+.++|.- -...|++.|.+...++..+.++.+.|+ .+.-+...|...++ ..++||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccc
Confidence 356789999999999999888887765 234899999999999999999999999 47888888998775 334899
Q ss_pred EEEEccchhh--h-----------CH-------hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 139 RIISCEMMEA--V-----------GH-------EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 139 ~I~~~~~l~~--~-----------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
-|+....... + +. .-..+++..+..++++||+|+.++.+...
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 9997543332 0 00 11356788888999999999999887544
No 250
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=1.3e-05 Score=63.20 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=80.3
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCceEEEEcccCCCC--
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA---GLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~---g~~~~v~~~~~d~~~~~-- 132 (288)
.+++..+.-.|.+|||+|.|- |..+..+|.. +...|...|-+++.++..++....+ ++ .++.++..+.....
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~aqsq 98 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL-TSCCVLRWLIWGAQSQ 98 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc-ceehhhHHHHhhhHHH
Confidence 344444445678999999995 6666666665 7789999999999998888776544 22 23433333333322
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....||.|+|...+..- +....+++.+.++|+|.|.-++.
T Consensus 99 ~eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HhhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEe
Confidence 34589999998877655 67788999999999999997763
No 251
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00015 Score=56.49 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
..+-+++++..+...+..+.+|+|+|.|......++..-...+|++++|=.+.+++-..-+.|+.+...|...|+...+.
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 34455667777777777799999999999988888764367999999999999999988888888889999999988772
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
..|..++..++-. -+..+..++..-+..+..++..-+..|.
T Consensus 137 -~dy~~vviFgaes-----~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 137 -RDYRNVVIFGAES-----VMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -cccceEEEeehHH-----HHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 2344444433322 2345556677777778887765555444
No 252
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.87 E-value=4.4e-05 Score=59.49 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=62.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccch-h----hh--CHhhHHHHHHHHhc
Q 048309 94 NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMM-E----AV--GHEYMEEYFGCCES 163 (288)
Q Consensus 94 ~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l-~----~~--~~~~~~~~l~~~~~ 163 (288)
+|+|+|+.+++++.+++++++.++..+++++..+=+.+. +.+++|+++.+... . .+ .++.-...++++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999999999999999999999888999999888766 33589999887432 1 11 12445678999999
Q ss_pred ccccCcEEEEEeecC
Q 048309 164 LLAKDGLLVLQFSST 178 (288)
Q Consensus 164 ~LkpgG~l~~~~~~~ 178 (288)
+|+|||.+.+.....
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999976553
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.86 E-value=0.00032 Score=58.46 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
+..+++... .+.++.||||-.+++..++.+. +...+++.|+++..++.|.++++.+++..++++..+|....- .+.
T Consensus 7 L~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 7 LTTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence 344444433 5667999999999999999988 667899999999999999999999999999999999996544 666
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+|+|+..++ +..-...++++-.+.|+.=-++++
T Consensus 85 ~~d~ivIAGM----GG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 85 EIDVIVIAGM----GGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CcCEEEEeCC----cHHHHHHHHHHhhhhhcCcceEEE
Confidence 8999988654 223455666666666654445555
No 254
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.83 E-value=0.00017 Score=61.45 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=64.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..+..+|+|||||.-=++..+... ++..++|+|++..+++.........+. +.++...|...-++....|+.+..=+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKEPADLALLLKT 180 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCCCcchhhHHHH
Confidence 345789999999999888887765 668999999999999999999988886 57888889888777788999999988
Q ss_pred hhhh
Q 048309 146 MEAV 149 (288)
Q Consensus 146 l~~~ 149 (288)
++.+
T Consensus 181 lp~l 184 (251)
T PF07091_consen 181 LPCL 184 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
No 255
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.79 E-value=9.8e-05 Score=60.56 Aligned_cols=107 Identities=12% Similarity=0.218 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC------CCCceEEEEcccCCCC----CCCCC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG------LQDHIRLYLCDYRQLP----KAKKY 137 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g------~~~~v~~~~~d~~~~~----~~~~f 137 (288)
..-.+.|||||-|.+...|+.. +..-+.|.++--...++.+++++..+ ...|+.+...+...+. ..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3356899999999999999988 88889999999999999999887654 2246778888777654 23455
Q ss_pred CEEEEccchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.-++..+.-.|+-.. --..++.+..-+|++||.++..+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 555555555555110 12447788888999999988643
No 256
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.76 E-value=0.00041 Score=62.12 Aligned_cols=100 Identities=23% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-cCCCC-CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-YRQLP-KAKKYD 138 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-~~~~~-~~~~fD 138 (288)
++..+..||++|+-+|+| .|..+.++|+..+++|+++|.+++-.+.|++.- .-.++... ..... ..+.||
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG-------Ad~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG-------ADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC-------CcEEEEcCCchhhHHhHhhCc
Confidence 445678899999999977 488999999976799999999999999988762 23444433 22222 223499
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+..-. ...+....+.|++||++++.-..
T Consensus 232 ~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9998644 33455556899999999986544
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00027 Score=59.59 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE-EEEcccCCCC-
Q 048309 56 RKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR-LYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~~- 132 (288)
-++...++...+ .++..+||||+.||+++..+.++...+|+++|..-.++..--+ .. +++. +...|+..+.
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR---~d---~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR---ND---PRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh---cC---CcEEEEecCChhhCCH
Confidence 455666777664 4678999999999999999998866789999998876643321 11 2343 4445666554
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..+..|+++|.-++--+ ..++..+..+++|+|-+++
T Consensus 139 ~~~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 139 EDFTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHcccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEE
Confidence 34578999998665544 7788888999999998876
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00047 Score=56.62 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=81.2
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCC
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYD 138 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD 138 (288)
.+.+++|.+||-+|..+|+...+++.- ....+.+|+.|+......-..+++. .|+-.+.+|+.... .-+..|
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhccccc
Confidence 345789999999999999999998876 4468999999999887777776665 58899999998754 336799
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+..-+ .+.+..-+..++...||+||.+++.
T Consensus 148 viy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 148 VIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 9997522 2244455778889999999977764
No 259
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.61 E-value=0.0032 Score=53.46 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P- 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~- 132 (288)
.+....+++...+ .|++||-+|=..-............+|+.+|+++..++..++.+++.|++ ++.+..|+.+. |
T Consensus 31 ~~Ra~~~~~~gdL-~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~ 107 (243)
T PF01861_consen 31 LRRAALMAERGDL-EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPE 107 (243)
T ss_dssp HHHHHHHHHTT-S-TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---T
T ss_pred HHHHHHHHhcCcc-cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCH
Confidence 3344445555443 68899999966533222222235679999999999999999999999984 99999999873 4
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc-EEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG-LLVL 173 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG-~l~~ 173 (288)
..++||++++... +.+ +-..-|+.+..+.||..| ..++
T Consensus 108 ~~~~~fD~f~TDPP-yT~--~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 108 ELRGKFDVFFTDPP-YTP--EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp TTSS-BSEEEE----SSH--HHHHHHHHHHHHTB-STT-EEEE
T ss_pred HHhcCCCEEEeCCC-CCH--HHHHHHHHHHHHHhCCCCceEEE
Confidence 4589999999754 222 566889999999998766 4444
No 260
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00079 Score=62.37 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=84.5
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~ 150 (288)
+++-+|||.-.+...+-+..-..|+.+|+|+..++........ . ..-..+..+|+..+. ++++||+|+.-++++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999998888776446899999999999877766431 1 135789999999988 889999999999998871
Q ss_pred -H-------hhHHHHHHHHhcccccCcEEEEEeec
Q 048309 151 -H-------EYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 151 -~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
. ......+.+++++|++||+++..+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 1 12355788999999999999887774
No 261
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.55 E-value=0.00027 Score=59.96 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=56.6
Q ss_pred HHHHHHcCCCCCC--EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH---HHcCC-----CCceEEEEccc
Q 048309 59 SLLIEKARVSKEH--EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV---NEAGL-----QDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~---~~~g~-----~~~v~~~~~d~ 128 (288)
+.+++..+++++. +|||.-+|.|..+..++. .|++|+++|-||-+....+.-+ ....- ..+++++.+|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 5577788777764 899999999999999987 4899999999998776655433 22211 13799999999
Q ss_pred CCCC--CCCCCCEEEEccchhhh
Q 048309 129 RQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 129 ~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
.++- ++.+||+|++..++.+-
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCHCCCHSS--SEEEE--S----
T ss_pred HHHHhhcCCCCCEEEECCCCCCc
Confidence 8854 56899999999888763
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.0011 Score=53.75 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC---------CC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP---------KA 134 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~---------~~ 134 (288)
+.|+.+|||+||.+|.+++-..++ +...|.|||+-.- . .+ ..++++.+ |+.+.. ++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 458899999999999999888776 6778999998441 1 11 23555555 665521 56
Q ss_pred CCCCEEEEccc--------hhhhCHhhH-HHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 KKYDRIISCEM--------MEAVGHEYM-EEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 ~~fD~I~~~~~--------l~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
...|+|++... ..|..--++ .+++.-....++|+|.+++..+...+
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 78999998632 223210111 22344456778899999998776543
No 263
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00076 Score=58.99 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------------------------
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ------------------------------- 118 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~------------------------------- 118 (288)
..+||--|||.|+++..++.. |..+-|-+.|--|+-...=.+.....+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 568999999999999999986 667788888887764333222100000
Q ss_pred --------CceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 119 --------DHIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 119 --------~~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.......||+.+.- ..++||+|+.++.+... .+.-+++..+..+|||||+.+-
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEe
Confidence 11222345555432 23479999999877776 8899999999999999999875
No 264
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.34 E-value=0.00038 Score=63.34 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=60.4
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEE
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIIS 142 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~ 142 (288)
..|||||.|||.++...++..+..|++++.-..|.+.|++....+|..++|+++..-..+.. +....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 36899999999999888877666899999999999999999999999999999988777765 2334666654
No 265
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.32 E-value=0.00068 Score=56.40 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
-.++.++-.+. +..|+|+|.-.|+.+..+|.. ..++|+|||++.... .++..+...+.++|+++++|..+
T Consensus 22 ~~~qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 22 VAYQELIWELK---PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp HHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSS
T ss_pred HHHHHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCC
Confidence 34556666654 569999999999888877652 357999999954322 12223334455789999999987
Q ss_pred CC-------C--CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 131 LP-------K--AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 131 ~~-------~--~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.. . .....+|+- .+-|.- +...+.++....++++|+++++.+..
T Consensus 97 ~~~~~~v~~~~~~~~~vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp THHHHTSGSS----SSEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHHHHhhccCCceEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 53 1 122223333 333222 55677788899999999999996543
No 266
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0011 Score=58.96 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=72.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCC---CceEEEEcccCCCCCCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQ---DHIRLYLCDYRQLPKAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~~~~~fD~I~~~ 143 (288)
.++++||+|.|.|.-+..+-.- +. .+++.++.|+..-+......+..... .+..-++.|-..++....|++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4568999999988765544332 22 36888888887766665554433221 1222334444445555677777765
Q ss_pred cchhhhC-HhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 144 EMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 144 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.-+-+.+ +..+...++.+..++.|||.+++.+.+.|..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 5444442 2334558999999999999999988777653
No 267
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.09 E-value=0.00057 Score=60.49 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.+..+++.+.+.++..++|.--|.|+.+..+.+. ++++++|+|-++.+++.+++++... .+++.++.+++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHH
Confidence 4567888888889999999999999999999987 6689999999999999998877643 368999999998764
Q ss_pred ----CCCCCCEEEEccch
Q 048309 133 ----KAKKYDRIISCEMM 146 (288)
Q Consensus 133 ----~~~~fD~I~~~~~l 146 (288)
...++|.|+....+
T Consensus 86 ~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHTTTTS-EEEEEEE-S-
T ss_pred HHccCCCccCEEEEcccc
Confidence 12479999886544
No 268
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.09 E-value=0.0046 Score=58.73 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-----------CC--
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-----------LP-- 132 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-----------~~-- 132 (288)
..++.+|+=+|||. |..++..++..|++|+++|.+++..+.+++. |. +++..|..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcchh
Confidence 45789999999997 8888888888788999999999988887763 32 222111111 00
Q ss_pred -----------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 -----------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 -----------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....+|+|+.......- ..+..+.+++.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01469999986544321 2233345888899999999887543
No 269
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0044 Score=54.19 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
-.+..+++.+.++++...+|.--|.|+.+..+.++. ..+++|+|-++.+++.|+++....+ +++.++..++.++.
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~ 87 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAE 87 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHH
Confidence 356788899999999999999999999999999882 3679999999999999999987755 58999999988754
Q ss_pred -----CCCCCCEEEEccch
Q 048309 133 -----KAKKYDRIISCEMM 146 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l 146 (288)
..+++|.|+....+
T Consensus 88 ~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 88 ALKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHHhcCCCceeEEEEeccC
Confidence 23588988876443
No 270
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.05 E-value=0.0037 Score=52.53 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcC---CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcc
Q 048309 53 AQMRKHSLLIEKAR---VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCD 127 (288)
Q Consensus 53 a~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d 127 (288)
-+...+..++.... ..+..++||||.|.-..--.+-.+ ++.+.+|.|+++..++.|+..+..+ ++...+++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 33344444444332 124567899999876554444444 8999999999999999999999887 676667776653
Q ss_pred cCC--CC----CCCCCCEEEEccchhhh
Q 048309 128 YRQ--LP----KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 128 ~~~--~~----~~~~fD~I~~~~~l~~~ 149 (288)
-.+ ++ ..+.||+.+|+..+|..
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred CccccccccccccceeeeEecCCCcchh
Confidence 332 11 46899999999988754
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.03 E-value=0.0019 Score=59.10 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC--CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP--KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~--~~~~fD~I~~~ 143 (288)
.+.++||.=+|+|.=++.++.. . ..+|+.-|+|+++++..+++++.+++.. ++++...|+..+- ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3568999999999999998887 3 3689999999999999999999999976 6899999998764 66889999764
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
. + ..+..++..+.+.++.||.+.++
T Consensus 129 P----f--GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 P----F--GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -----S--S--HHHHHHHHHHEEEEEEEEEE
T ss_pred C----C--CCccHhHHHHHHHhhcCCEEEEe
Confidence 2 2 34577888899999999999984
No 272
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.02 E-value=0.007 Score=51.92 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-----HHcCCCCceEEEEcccCCCC----CCCC-CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-----NEAGLQDHIRLYLCDYRQLP----KAKK-YD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~-----~~~g~~~~v~~~~~d~~~~~----~~~~-fD 138 (288)
....|||+|+|+|-.++..+...+.+|+.-|+... ++..+.+. ..+.+...+.+...+....+ .... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35579999999998888888777889999996443 33333222 22222235666655554432 2233 99
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|++..++.+- ...+.++.-+..+|..+|.+++..
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEE
Confidence 99999998876 677888888888998899666543
No 273
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.99 E-value=0.011 Score=56.16 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=83.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT-----GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
..+++.+.+.+..+|.|..||+|++.....+.. ...++|.|+++.....|+.+.--+|+..++....+|...-+
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 445555566677899999999999877766541 26799999999999999999988887544567777666544
Q ss_pred C-----CCCCCEEEEccchhh---h--------------------CHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 K-----AKKYDRIISCEMMEA---V--------------------GHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~-----~~~fD~I~~~~~l~~---~--------------------~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. .+.||.|+++..+.- . .......+++.+...|+|||+..+
T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 2 256999999865530 0 011226788999999999886554
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.83 E-value=0.0018 Score=60.35 Aligned_cols=99 Identities=16% Similarity=0.319 Sum_probs=65.7
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC-CCCCCCEEEEccchhh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP-KAKKYDRIISCEMMEA 148 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~l~~ 148 (288)
..|+|+..|.|+++..|...+ |......|..-.-.-..+-+.|+ +-.. .|. +.++ -+.+||+|.+.+.+..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL---IG~y-hDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL---IGVY-HDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc---chhc-cchhhccCCCCcchhheehhhhhhh
Confidence 469999999999999998752 44444333311111122333444 2222 222 2234 4589999999998887
Q ss_pred h-CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 149 V-GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 149 ~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. ...++..++-++-|+|+|||.+++.+.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6 345678899999999999999999553
No 275
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.83 E-value=0.0034 Score=53.00 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=75.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~ 136 (288)
+.+.++|+.+||-+|.++|+...++..- +..-|++++.|+-.=......++.. .||-.+..|+.... .-..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence 5567889999999999999998888765 5567999999876544443333332 57888888887643 3357
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.|+|++.-. .+....-+.-++...||+||-++++-
T Consensus 227 VDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 227 VDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 888887522 11334445567789999999999853
No 276
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.80 E-value=0.031 Score=48.69 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~ 130 (288)
...+.++..+...-......|+.+|||-=.-...+....+..++=+|. |+.++.-++.+.+.+. +.+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 344555555554322234579999999866665553323456777774 6667766777775442 3578899999862
Q ss_pred -CC---CC-----CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 131 -LP---KA-----KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 131 -~~---~~-----~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+. .. +..-++++-+++.+++++...++++.+.+...||+.+++.....
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 11 11 23447888899999998999999999999988999999876543
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.019 Score=51.64 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=81.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHc-cC----CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQ-TG----CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------- 132 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~----~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------- 132 (288)
++++|+.+|||+....|.=+..+.+. .. ..|++-|.++.-+...........- .++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 46789999999999999988888775 22 2799999999988888777754433 35666666665544
Q ss_pred ---CCCCCCEEEEccch------hhhC------H---------hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 ---KAKKYDRIISCEMM------EAVG------H---------EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l------~~~~------~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
....||-|++.-.. .+.+ + .-...++.+..++||+||.++-++.+...
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 22469999985322 2210 0 11245788899999999999998877543
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.75 E-value=0.0099 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=65.4
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
+......++.+||-+|||. |..+..+++..+. +|+++|.+++.++.+++. |...-+.....++.+.. ..+.+|
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCC
Confidence 3444555788999999885 8888888887666 699999999888877653 32100111111222222 224589
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+-.-. . ...++.+.+.|++||++++...
T Consensus 238 ~vid~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVSG-----H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 8886422 1 2345666788999999987543
No 279
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.0038 Score=49.22 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=39.5
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+++.|+|++..+++|++-+.-..+++.|++.|||||.+-+..
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 5689999999999999988888999999999999999999843
No 280
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.62 E-value=0.013 Score=53.04 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=95.7
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHH-----
Q 048309 39 SYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKV----- 112 (288)
Q Consensus 39 a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~----- 112 (288)
..||.........+.+...+..+.+.+.+.++....|+|+|.|.....++...+ ..-+|+++.....+.+..+.
T Consensus 162 ~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk 241 (419)
T KOG3924|consen 162 NQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKK 241 (419)
T ss_pred HHhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHH
Confidence 446666656677788888899999999999999999999999999988877633 34677776555444333222
Q ss_pred --HHcCC-CCceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 113 --NEAGL-QDHIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 113 --~~~g~-~~~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+..|- +..++.+.+++.+.. .....++|+++++..- ++..--+.++..-+++|-+++-...-.+
T Consensus 242 ~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 242 LMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 22232 346788888887644 3467889998876432 2333334488888899999887544333
No 281
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.58 E-value=0.02 Score=51.74 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc----------c-------CCEEEEEcCCHH-HHHHHHHHHHHc---C
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ----------T-------GCNYTGITLSAE-QMKYAEMKVNEA---G 116 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~----------~-------~~~v~giD~s~~-~~~~a~~~~~~~---g 116 (288)
+..++........-+|+|+||..|..+..+... . .-+|.--|+=.. .-...+...... .
T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~ 84 (334)
T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK 84 (334)
T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH
T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC
Confidence 334443334445578999999999988776542 0 126777774221 211111111110 0
Q ss_pred CCCc--eEEEEcccCCCC-CCCCCCEEEEccchhhhCH-------------------------------------hhHHH
Q 048309 117 LQDH--IRLYLCDYRQLP-KAKKYDRIISCEMMEAVGH-------------------------------------EYMEE 156 (288)
Q Consensus 117 ~~~~--v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~-------------------------------------~~~~~ 156 (288)
-..+ +.-+.+.+..-- |.++.|++++..++|+++. .+...
T Consensus 85 ~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~ 164 (334)
T PF03492_consen 85 KFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSS 164 (334)
T ss_dssp HTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 0012 233445555433 7899999999999987631 22333
Q ss_pred HHHHHhcccccCcEEEEEeecCCC
Q 048309 157 YFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 157 ~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|+.=.+-|+|||++++...+.++
T Consensus 165 FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 165 FLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHhhheeccCcEEEEEEeeccc
Confidence 555556788999999999888776
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.56 E-value=0.0078 Score=52.44 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCC---CCCCCCE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLP---KAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~---~~~~fD~ 139 (288)
+..+++||-||.|.|...+..++| .-.++..+|++...++..++..... |. .+++.+..+|...+- ..++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 345679999999999999998888 3347999999999999888877643 22 257899999887654 4689999
Q ss_pred EEEccchhhhCH--hhHHHHHHHHhcccccCcEEEEE
Q 048309 140 IISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+...+=--.+. --...+++.+.+.||+||+++..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 997533111111 12466888999999999998874
No 283
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.53 E-value=0.04 Score=50.14 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC--------CCCCCCC
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR--------QLPKAKK 136 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~--------~~~~~~~ 136 (288)
..++.+|+=+|||+ |.++..+++. ...+|+.+|.++..++.|++.... ..+..... .......
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCC
Confidence 34455999999998 8888888887 457899999999999999875321 22222111 1112347
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|+++-.-. ....+..+.+.++|||.+++.-.....
T Consensus 239 ~D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVIEAVG--------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCEEEECCC--------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 999986533 134777888999999999987665444
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.51 E-value=0.035 Score=46.30 Aligned_cols=115 Identities=8% Similarity=0.058 Sum_probs=67.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHH---------------------
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNE--------------------- 114 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~--------------------- 114 (288)
++.+..+....+-++.|-.||.|++..-+.-- .-..|.|-|+++++++.|++++.-
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 33344444455678999999999987665432 224799999999999999876532
Q ss_pred --------------------cCCCCceEEEEcccCCC------CCCCCCCEEEEccchhhh-------CHhhHHHHHHHH
Q 048309 115 --------------------AGLQDHIRLYLCDYRQL------PKAKKYDRIISCEMMEAV-------GHEYMEEYFGCC 161 (288)
Q Consensus 115 --------------------~g~~~~v~~~~~d~~~~------~~~~~fD~I~~~~~l~~~-------~~~~~~~~l~~~ 161 (288)
.|-.....+.+.|+.+. +.....|+|+..-...++ +..-...+++.+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 11112367888888873 234557999997544333 223467899999
Q ss_pred hcccccCcEEEE
Q 048309 162 ESLLAKDGLLVL 173 (288)
Q Consensus 162 ~~~LkpgG~l~~ 173 (288)
+.+|-+++++.+
T Consensus 201 ~~vLp~~sVV~v 212 (246)
T PF11599_consen 201 APVLPERSVVAV 212 (246)
T ss_dssp HCCS-TT-EEEE
T ss_pred HhhCCCCcEEEE
Confidence 999965566665
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.46 E-value=0.0085 Score=52.93 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=74.7
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc---CCC--
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY---RQL-- 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~-- 131 (288)
-+.......+.|.+||-+|+|+ |..+...|+. ...+|+.+|+++..++.|++ + |.+ ........ .++
T Consensus 159 ~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~--~~~~~~~~~~~~~~~~ 232 (354)
T KOG0024|consen 159 VHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT--VTDPSSHKSSPQELAE 232 (354)
T ss_pred hhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe--EEeeccccccHHHHHH
Confidence 3456667788999999999997 7777777777 55689999999999999988 3 321 11111111 111
Q ss_pred --C---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcc
Q 048309 132 --P---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDAR 182 (288)
Q Consensus 132 --~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 182 (288)
. ....+|+.+....++ ..++.....+++||++++..+..+...
T Consensus 233 ~v~~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 233 LVEKALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred HHHhhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCccc
Confidence 1 224589988764443 233444578999999888877765543
No 286
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.34 E-value=0.0027 Score=47.14 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=31.7
Q ss_pred CCCEEEEccchhhh----CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAV----GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.||+|+|..+.-++ +++-+..+++++++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998876544 5566889999999999999999994
No 287
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.33 E-value=0.077 Score=48.64 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCCCCCEEEEccchhhhCH------------------------------------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMMEAVGH------------------------------------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|.++.+++++..++|+++. .|...+++.=.+-|.|||.+++...
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 6789999999999988741 1233355555678899999999988
Q ss_pred cCCC
Q 048309 177 STPD 180 (288)
Q Consensus 177 ~~~~ 180 (288)
+.+.
T Consensus 239 Gr~~ 242 (386)
T PLN02668 239 GRTS 242 (386)
T ss_pred cCCC
Confidence 7754
No 288
>PHA01634 hypothetical protein
Probab=96.29 E-value=0.033 Score=42.52 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=55.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
+-...++. .+++|+|||.+.|..+++++......|++++.++...+..+++++...+-++. ....+++ .-+.||
T Consensus 20 ~~Y~~idv-k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~----v~~~eW~~~Y~~~D 94 (156)
T PHA01634 20 HAYGMLNV-YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKA----VMKGEWNGEYEDVD 94 (156)
T ss_pred HHhhheee-cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeece----eecccccccCCCcc
Confidence 33444444 47799999999999999998876668999999999999999987764321111 1111333 346788
Q ss_pred EEEEc
Q 048309 139 RIISC 143 (288)
Q Consensus 139 ~I~~~ 143 (288)
+.+..
T Consensus 95 i~~iD 99 (156)
T PHA01634 95 IFVMD 99 (156)
T ss_pred eEEEE
Confidence 77653
No 289
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.06 Score=48.51 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=77.8
Q ss_pred CCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
+.+|+|-=||+|.=++.++...+. +|+.-|+||.+++.++++++.+.. .+..++..|+..+- ....||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDP-- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDP-- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCC--
Confidence 679999999999999999888443 899999999999999999998833 35677778887755 347899886532
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+ ..+..++..+.+.++.||.+.++
T Consensus 130 --F--GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 --F--GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred --C--CCCchHHHHHHHHhhcCCEEEEE
Confidence 2 34466777788888999999884
No 290
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.22 E-value=0.011 Score=49.57 Aligned_cols=95 Identities=12% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCEEEEECCcccHHHHHHHHc-cC------C---EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TG------C---NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------- 132 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~------~---~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------- 132 (288)
-.+++|+....|.++..++++ .. . .+++||+.+- +.+ ..|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence 368999999999999999886 21 1 2999998652 234 35788899997743
Q ss_pred --CCCCCCEEEEccc-----hhhh----CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 --KAKKYDRIISCEM-----MEAV----GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 --~~~~fD~I~~~~~-----l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..++.|+|+|.++ +|.+ ..+-+.+.+.-...+|+|||.|+..-+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 2458999999864 3333 223345567777899999999987443
No 291
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.03 Score=52.57 Aligned_cols=102 Identities=15% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCEEEEECCcccHHHHHHHH---c--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CCCCCEEEEc
Q 048309 70 EHEVLEIGCGWGTFAIEVVR---Q--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AKKYDRIISC 143 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~---~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~fD~I~~~ 143 (288)
...|+=+|.|-|-+.....+ . ...++++|+-+|.++-..+. ....++.++|+++-.|+.++.+ ..+.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 34678899999977554433 2 35689999999999877665 3344556789999999999995 4899999873
Q ss_pred cchhhhCH-hhHHHHHHHHhcccccCcEEEE
Q 048309 144 EMMEAVGH-EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 144 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+.-++. +--.+.+..+...|||+|..+=
T Consensus 447 -LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 -LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred -hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 2222221 3346788888999999986653
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.14 E-value=0.077 Score=48.81 Aligned_cols=109 Identities=23% Similarity=0.254 Sum_probs=71.0
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-c----CCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-Y----RQLPKAK 135 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-~----~~~~~~~ 135 (288)
....+.++.+||.+|||. |..+..+++..+. +++++|.+++..+.+++.. +. ..+.....+ . .++....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence 455677889999999998 8899999988665 6999999999988887652 11 111111111 1 1111334
Q ss_pred CCCEEEEccch-----------hhh--CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMM-----------EAV--GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l-----------~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+|+-.-.- .|. +..+....+.++.+.|+++|++++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 69999874211 111 11223557788889999999998864
No 293
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.98 E-value=0.043 Score=43.69 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHH-HHHHHHHHcCCCCceEEEEcccCC-CC-CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK-YAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~-~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~l 146 (288)
+++.+-+|+..-..-....++...+|..||-++--++ ..+.++ ..+...|+.. +. -.++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 5678888888665544444445567888886542111 011110 1222223321 11 34789999999999
Q ss_pred hhhCH---------hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 147 EAVGH---------EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 147 ~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|++- .--...+.++.++|||||.+++..+..++
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 99722 12356788999999999999998776654
No 294
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.91 E-value=0.007 Score=53.76 Aligned_cols=114 Identities=15% Similarity=0.238 Sum_probs=84.1
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHH-------HHHHHHHHcCC-CCceEEEEcccCCCC-
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK-------YAEMKVNEAGL-QDHIRLYLCDYRQLP- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~-------~a~~~~~~~g~-~~~v~~~~~d~~~~~- 132 (288)
+..+..++|..|+|--.|||.+....|. .|+.|.|.|++-.++. ..+.++++.|. +.-+.++.+|....+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence 3444567999999999999999888776 6899999999998887 34567777774 334688999998877
Q ss_pred -CCCCCCEEEEccch------------------------hhhCH-------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 -KAKKYDRIISCEMM------------------------EAVGH-------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 -~~~~fD~I~~~~~l------------------------~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....||+|+|.... .|.+. .-....+.-..+.|..||++++--.
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 66789999997532 12211 1134456667788889999887433
No 295
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.90 E-value=0.12 Score=46.17 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=64.9
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC------CCCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ------LPKAKK 136 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~------~~~~~~ 136 (288)
...+.++.+||..|+|. |..+..+++..+.+|++++.+++..+.+++ .|.. .++...-.. ....+.
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCC
Confidence 33467788999988874 888888888878889999999988877754 2331 111111001 113467
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++.... ....++++.+.|+++|.++...
T Consensus 233 ~D~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 233 FDVIFDFVG--------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ceEEEECCC--------CHHHHHHHHHHhhcCCEEEEEC
Confidence 998885421 1345667779999999998754
No 296
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.86 E-value=0.0031 Score=54.95 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCCEEEEECCcccHHHH-HHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAI-EVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~-~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+..|+|+-.|.|+++. .+.......|.++|.+|..++..++.++.+++..++.++.+|-....+....|.|.....-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlP- 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLP- 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecccc-
Confidence 45889999999999998 5555455689999999999999999999988877788888888877778889988864221
Q ss_pred hhCHhhHHHHHHHHhcccccCc--EEEEEeec
Q 048309 148 AVGHEYMEEYFGCCESLLAKDG--LLVLQFSS 177 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~ 177 (288)
.-++-.-.+..+|+|.| .+-++...
T Consensus 273 -----Sse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 273 -----SSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -----ccccchHHHHHHhhhcCCcEEEEeccc
Confidence 11233333456777754 44444433
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=95.86 E-value=0.04 Score=48.59 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE 114 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 114 (288)
...+.+++...- .+|..|||.-||+|+.+....+ .+.+.+|+|++++.++.|+++++.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345566666654 5789999999999999887666 488999999999999999999854
No 298
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.86 E-value=0.12 Score=46.52 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
.....+++.+||-.|+|. |..+..+++..+.+|++++.+++..+.+++ .|.. .++ |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~---~vi--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA---SAG--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc---eec--ccccc-CcccceEEE
Confidence 446778899999999764 777788888777889999999887776655 3431 111 11111 124688765
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-.... ...+....+.|++||++++.-.
T Consensus 229 ~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 43211 2356677789999999987543
No 299
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.84 E-value=0.0086 Score=51.96 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH-------HHH--HcCCCCceEEEEcccCCCC--CCC-
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM-------KVN--EAGLQDHIRLYLCDYRQLP--KAK- 135 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~-------~~~--~~g~~~~v~~~~~d~~~~~--~~~- 135 (288)
-.+++|||+|||.|...+.+.......+...|.+...++.-.- .+. ......-..+...+..+.. ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 3688999999999999998887644788888888877731110 000 0000001223333111211 112
Q ss_pred -CCCEEEEccchhhhCHhhHHHH-HHHHhcccccCcEEEE
Q 048309 136 -KYDRIISCEMMEAVGHEYMEEY-FGCCESLLAKDGLLVL 173 (288)
Q Consensus 136 -~fD~I~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~~ 173 (288)
.||+|.+..++.-. .....+ ......+++++|++++
T Consensus 195 ~~ydlIlsSetiy~~--~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSI--DSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCc--chhhhhHhhhhhhcCCccchhhh
Confidence 79999998887766 333333 4555677888998776
No 300
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.82 E-value=0.07 Score=48.38 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=61.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcC---CHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITL---SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~---s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
...++.+||-+|+|. |.++..+++..+++|++++. +++..+.+++ .|.. .+.....+..+....+.+|+|+
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhhcCCCCEEE
Confidence 356788999999886 88888888887779999986 5666665543 3431 1111111111111224689888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-... -...+.+..+.|++||.+++...
T Consensus 244 d~~g--------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 244 EATG--------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ECcC--------CHHHHHHHHHHccCCcEEEEEec
Confidence 6432 12356677789999999887543
No 301
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.79 E-value=0.028 Score=50.51 Aligned_cols=99 Identities=24% Similarity=0.259 Sum_probs=64.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC---CCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR---QLPK 133 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~---~~~~ 133 (288)
+..+...++.+||=+|+|. |..+..+++..+.+ |++++.+++..+.+++. |.. .++.. +.. +...
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVINSGQDDVQEIRELTS 228 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCCcchHHHHHHHhC
Confidence 3556677899999999875 77788888876777 99999999887776543 331 12211 111 1112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+|+-... -...+....+.|+++|++++..
T Consensus 229 ~~~~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSG--------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 347999985421 1223455568899999998743
No 302
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.16 Score=43.41 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHH-Hc-CCCCceEEEEcccCCCC---CCCCCC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVN-EA-GLQDHIRLYLCDYRQLP---KAKKYD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~-~~-g~~~~v~~~~~d~~~~~---~~~~fD 138 (288)
.+..++|+|+|+..-+..+... ...+++-||+|+..++...+.+. .. ++ .+.-+++|.+..- +.++--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhhhHHHHHhcccCCCeE
Confidence 4679999999998776665443 33589999999998865544443 32 33 3667777876522 323333
Q ss_pred EE-EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RI-ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I-~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++ +...++..+++.+-..++.++...|+||-.+++..
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33 33456788888889999999999999999999843
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.74 E-value=0.044 Score=52.12 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=64.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----------------
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ---------------- 130 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---------------- 130 (288)
.++.+|+=+|||. |..+..+++..++.|+++|.++...+.++.. |. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccccceeecCHHH
Confidence 3578999999997 7778878777788999999999987766652 32 333333211
Q ss_pred -------CC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 131 -------LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 131 -------~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++ ....+|+|+..-.+..- +.+.-..++..+.+|||++++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEEE
Confidence 11 12579999876544432 2333466777899999998663
No 304
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.69 E-value=0.063 Score=47.50 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=75.9
Q ss_pred HHHcCCCCCCEEEEEC-CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEE-EcccCC-CC--CCCC
Q 048309 62 IEKARVSKEHEVLEIG-CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY-LCDYRQ-LP--KAKK 136 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiG-cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~-~~--~~~~ 136 (288)
+...+..||++|--+| +|-|.++..+|+..+.+|++||-+..--+.+-+. .|-+.-+... ..|... +. .+.-
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcceeEEecCCHHHHHHHHHhhcCc
Confidence 4556777999998888 5579999999999999999999987555555443 3321111111 111111 11 2344
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHH
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAM 213 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 213 (288)
.|.+.+. + ...+..+..+||++|.+++... |.. +.........+.+....++..-+..+..+.+
T Consensus 251 ~~~v~~~-a---------~~~~~~~~~~lk~~Gt~V~vg~--p~~-~~~~~~~~lil~~~~I~GS~vG~~ket~E~L 314 (360)
T KOG0023|consen 251 IDTVSNL-A---------EHALEPLLGLLKVNGTLVLVGL--PEK-PLKLDTFPLILGRKSIKGSIVGSRKETQEAL 314 (360)
T ss_pred ceeeeec-c---------ccchHHHHHHhhcCCEEEEEeC--cCC-cccccchhhhcccEEEEeeccccHHHHHHHH
Confidence 4555432 1 2233445589999999998543 332 2212111222333344455566655555444
No 305
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.073 Score=47.95 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----c----CCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----T----GCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~----~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
..+.++++.+..+.+..++|||.|+|.++..+.+. + ..++..|++|++..+.=+++++..
T Consensus 64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 33456667777777789999999999999888764 1 578999999999988877777654
No 306
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.66 E-value=0.11 Score=47.59 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=64.9
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P-- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~-- 132 (288)
+.....++++.+||=.|+|. |..+..+++..+. +|+++|.+++..+.+++. |.. .++..+-.++ .
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVREL 255 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHH
Confidence 34555677889999999875 7888888887676 699999999988877542 331 2221111111 1
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-.-. -...+....+.|+++|++++..
T Consensus 256 ~~~g~d~vid~~G--------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 256 TGGGVDYAFEMAG--------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred hCCCCCEEEECCC--------ChHHHHHHHHHHhcCCEEEEEc
Confidence 1236899885321 0234555668899999988754
No 307
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.64 E-value=0.044 Score=47.44 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=56.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCceE
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-T--------GCNYTGITLSAEQMKYAEMKVNEA-----GLQDHIR 122 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~--------~~~v~giD~s~~~~~~a~~~~~~~-----g~~~~v~ 122 (288)
+....+..+ +..+-+|+|+|.|+|.++..++.. . ..+++.||+|+.+.+.-++++... ....++.
T Consensus 6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~ 85 (252)
T PF02636_consen 6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR 85 (252)
T ss_dssp HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE
T ss_pred HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc
Confidence 334455554 223469999999999999988774 1 258999999999988888776542 1223455
Q ss_pred EEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 123 LYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 123 ~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
+ ..++.+.+ ..-+|+++..+..+|
T Consensus 86 w-~~~l~~~p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 86 W-LDDLEEVP---FPGFIIANELFDALP 109 (252)
T ss_dssp E-ESSGGCS----CCEEEEEESSGGGS-
T ss_pred h-hhhhhccc---CCEEEEEeeehhcCc
Confidence 5 23333332 567888888888774
No 308
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.61 E-value=0.049 Score=49.17 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCC-CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 53 AQMRKHSLLIEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
.+.+.+..++..+... +-..|+|+|.|.|+++..++-+.+..|.+||-|....+.|++
T Consensus 136 hEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 136 HEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3445555566555433 336899999999999999988888999999999877777664
No 309
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.60 E-value=0.04 Score=48.29 Aligned_cols=100 Identities=22% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-ccc----CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDY----RQLPKA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~----~~~~~~ 134 (288)
+......++.+||-+|+|. |..+..+++..+.+ |+++|.+++..+.+++. |.. .++. .+. ......
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNG 185 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCC
Confidence 4445556888999999875 88888888876665 99999998877776553 321 1111 111 111123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+|+++-... -...++.+.+.|+++|++++...
T Consensus 186 ~g~d~vid~~G--------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 186 RGVDVALEFSG--------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCEEEECCC--------ChHHHHHHHHHhcCCCEEEEecc
Confidence 46899885321 12356666789999999987553
No 310
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.58 E-value=0.03 Score=42.82 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=59.0
Q ss_pred cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCCCCCCEEEEccchhhhCH
Q 048309 79 GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKAKKYDRIISCEMMEAVGH 151 (288)
Q Consensus 79 G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~~~fD~I~~~~~l~~~~~ 151 (288)
|.|..+..+++..+++|+++|.++...+.+++. |. -.++..+-.++ .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecC------
Confidence 568899999988779999999999988887654 32 13333322221 13357999986522
Q ss_pred hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 152 EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 152 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
-...++....+|+++|++++.....
T Consensus 68 --~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1456777779999999999865544
No 311
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.57 E-value=0.13 Score=42.12 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
.++.++-.+ ++..|+|+|+-.|+.+...|.. .| .+|+++|++-....-+... . +++.++.++..+.
T Consensus 60 ~yQellw~~---~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dp 130 (237)
T COG3510 60 NYQELLWEL---QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDP 130 (237)
T ss_pred HHHHHHHhc---CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCH
Confidence 344555443 4568999999999988877764 34 6899999887654333221 2 5799999998875
Q ss_pred C--------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 132 P--------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 132 ~--------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
. ..+.--+.+|..+-||. +...+-++-...+|..|-++++.+....+
T Consensus 131 ai~eqi~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 131 AIAEQIRRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 3 12233555666677777 66777888888999999999998766444
No 312
>PRK13699 putative methylase; Provisional
Probab=95.46 E-value=0.08 Score=45.14 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
.+..+++... .+|..|||.-||+|..+....+ .+.+++|+|++++..+.+.++++..
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4455665443 4788999999999999887766 4889999999999999999988754
No 313
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.46 E-value=0.042 Score=48.23 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=54.6
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C-CCCCCEEEEccchhh
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K-AKKYDRIISCEMMEA 148 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~-~~~fD~I~~~~~l~~ 148 (288)
+++|+-||.|.++.-+.+.....+.++|+++.+++..+.++.. .++.+|+.++. . ...+|+++....+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 6899999999998888765333578899999999888777531 26778888876 2 467999999877665
Q ss_pred h
Q 048309 149 V 149 (288)
Q Consensus 149 ~ 149 (288)
+
T Consensus 75 f 75 (275)
T cd00315 75 F 75 (275)
T ss_pred h
Confidence 5
No 314
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.44 E-value=0.054 Score=45.47 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
...++++++..- .+|..|||.-||+|+.+....+ .+.+.+|+|++++.++.|++
T Consensus 178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 345566666654 5788999999999999887766 48899999999999998864
No 315
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.011 Score=54.97 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I 140 (288)
.++.+|||.=|++|.-++..++. ++ .+|++.|.++..++..+++++.++..+.++....|+..+- ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35679999999999999999988 33 4799999999999999999999988877888888886542 34789999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
=.... .....|+..+.+.++.||.+.++
T Consensus 188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCC------CCccHHHHHHHHHhhcCCEEEEE
Confidence 76421 33467888888999999999984
No 316
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.39 E-value=0.11 Score=44.69 Aligned_cols=126 Identities=11% Similarity=0.085 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHH---c---cCCEEEEEcCCH-------------------
Q 048309 49 DLKVAQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVR---Q---TGCNYTGITLSA------------------- 102 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~---~---~~~~v~giD~s~------------------- 102 (288)
.+.......+..+++.+- ..-+..|+|+||-.|..++.++. . .+.++.+.|.=+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 445666666777777663 22345899999999987765433 1 234688887211
Q ss_pred -------HHHHHHHHHHHHcCC-CCceEEEEcccCC-CC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEE
Q 048309 103 -------EQMKYAEMKVNEAGL-QDHIRLYLCDYRQ-LP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 103 -------~~~~~a~~~~~~~g~-~~~v~~~~~d~~~-~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
...+..++++...|+ .++++++.+.+.+ ++ +..++-++....-++ +.....++.++..|.|||++
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEE
Confidence 123444455544454 4589999999866 33 334444444433333 44577899999999999999
Q ss_pred EEEeecC
Q 048309 172 VLQFSST 178 (288)
Q Consensus 172 ~~~~~~~ 178 (288)
++.++..
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9977654
No 317
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.38 E-value=0.034 Score=50.53 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=64.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccCC----CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYRQ----LP 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~----~~ 132 (288)
.......++.+||-.|||. |..+..+++..+. +|+++|.+++..+.+++ .|.. .++.. +..+ ..
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~ 241 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALT 241 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHh
Confidence 3445667899999999875 7788888887676 59999999988877754 2321 22211 1111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+|+-.-.- ...+....+.+++||++++..
T Consensus 242 ~~~g~d~vid~~g~--------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 242 GGFGADVVIDAVGR--------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 22468988853211 234555668899999998754
No 318
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.26 E-value=0.15 Score=46.05 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEECCcc-cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 65 ARVSKEHEVLEIGCGW-GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
+..+++.+||-+|||. |.++..++++ .+.+|+++|.+++.++.+++ .+. . ... .++.....+|+|+
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~---~~~~~~~g~d~vi 227 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI---DDIPEDLAVDHAF 227 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh---hhhhhccCCcEEE
Confidence 3456789999999986 7777777764 34689999999988877754 221 1 111 1122222589888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-.-. . ......+....+.|++||++++.-.
T Consensus 228 D~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--G---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCC--C---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 5321 0 1123466777899999999987543
No 319
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.15 E-value=0.19 Score=44.62 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~ 130 (288)
+..+.++..+...-...-..|+-+|||-=.-+-.+-...+..|.-+|. |+.++.=++.+.+.+. +...+++..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 444455554443322225689999999755444443323567888885 7788777777777653 3468999999984
Q ss_pred CC-----CCCCC-----CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 LP-----KAKKY-----DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~~-----~~~~f-----D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-. ....| =++++-+.+.+++++...+++..+.....||..++....
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 32 32334 478888999999999999999999999999998887553
No 320
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.06 E-value=0.18 Score=46.81 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 57 KHSLLIEKARV-SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 57 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
.+..+.+..+. .+|.+|+=+|||+ |......++..|++|+.+|.++...+.|+. .|. +.. +..+ .-
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e--~v 255 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY----EVM--TMEE--AV 255 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC----EEc--cHHH--HH
Confidence 34555555443 5789999999998 777777776678899999999987766654 232 222 1111 11
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHH-HhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGC-CESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 175 (288)
..+|+|+.... . ...+.. ..+.+++||+++...
T Consensus 256 ~~aDVVI~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 256 KEGDIFVTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred cCCCEEEECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 45899987532 1 223333 478999999987754
No 321
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.96 E-value=0.11 Score=44.57 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC------CCCCCCCE
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------PKAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------~~~~~fD~ 139 (288)
..++.+||..|+|. |..+..+++..+.+|++++.+++..+.+++. +.. .++...-.+. ...+.+|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCCE
Confidence 36889999999985 7777788877778999999998877666432 211 1111111111 12467999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++....- ...+..+.+.|+++|.++...
T Consensus 205 vi~~~~~--------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG--------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC--------HHHHHHHHHhcccCCEEEEEc
Confidence 9864321 134555668889999988744
No 322
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.78 E-value=0.027 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCH
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSA 102 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~ 102 (288)
+....+|||||+|.+.--|.+. |..=.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 4568999999999998888875 77888999643
No 323
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.68 E-value=0.27 Score=44.28 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--- 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--- 131 (288)
.+..+.+...++++.+||=.| .|.|..+.++|+..+..++++..+++-.+.+++. |-+.-+.+...|+.+-
T Consensus 130 A~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 130 AWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRE 205 (326)
T ss_pred HHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHH
Confidence 334455567788899999998 4568999999998665777777777665554443 4321233334443331
Q ss_pred -CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 132 -PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 132 -~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.....+|+|+..-. ...+.+....|+++|+++.....
T Consensus 206 ~t~g~gvDvv~D~vG---------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 206 LTGGKGVDVVLDTVG---------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred HcCCCCceEEEECCC---------HHHHHHHHHHhccCCEEEEEecC
Confidence 13347999997432 34455566899999999885443
No 324
>PLN02740 Alcohol dehydrogenase-like
Probab=94.68 E-value=0.22 Score=45.76 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=63.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-----cCC-CC--
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-----YRQ-LP-- 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-----~~~-~~-- 132 (288)
+....+++.+||=+|+|. |..+..+++..+. +|+++|.+++..+.+++ .|.. .++... ..+ +.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 445678899999999886 8888888887676 69999999988887754 2431 222211 111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-...- ...+......+++| |++++..
T Consensus 265 ~~~g~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEc
Confidence 12369998864221 23455566788887 9887644
No 325
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.61 E-value=0.084 Score=46.59 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 70 EHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
+.+|.-||.|. |..+..+|...++.|+.+|+|...+++....+. .+++.+-.+...+. .-.+.|+++..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 34677899996 999999988788999999999998887776653 35777777776665 446899998754333
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-- ..+.-..+++...+|||++++=
T Consensus 243 ga--kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GA--KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CC--CCceehhHHHHHhcCCCcEEEE
Confidence 33 5566778888899999998763
No 326
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.57 E-value=0.019 Score=52.42 Aligned_cols=64 Identities=19% Similarity=0.403 Sum_probs=56.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQL 131 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~ 131 (288)
.++|..|.|+-||.|-++..++.. +|.|++-|+++++++..+.++..+.+.+. +++..+|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 458899999999999999999986 79999999999999999999988877555 88888888654
No 327
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.53 E-value=0.58 Score=39.21 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=64.9
Q ss_pred CCCCEEEEECCcccH----HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-CC-CCCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGT----FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-QL-PKAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~----~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-~~-~~~~~fD~I 140 (288)
...+.++++.|+.|. ++...|.+ .+.++++|-.+++.....++.+...++.+.++|+.++.. ++ +.-...|.+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 345678999766432 23333333 778999999999988888888888888666799998853 33 334679998
Q ss_pred EEccchhhhCHhhHH-HHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYME-EYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...-. ++.. .+|+-+ + +.|.|-+++..
T Consensus 120 vVDc~~-----~d~~~~vl~~~-~-~~~~GaVVV~~ 148 (218)
T PF07279_consen 120 VVDCKR-----EDFAARVLRAA-K-LSPRGAVVVCY 148 (218)
T ss_pred EEeCCc-----hhHHHHHHHHh-c-cCCCceEEEEe
Confidence 876432 2333 444433 2 44556655533
No 328
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.49 E-value=0.25 Score=44.74 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=64.2
Q ss_pred HHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----ccCC-CC--C
Q 048309 63 EKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DYRQ-LP--K 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~~~-~~--~ 133 (288)
....+.++.+||=.|+ | .|..+.++++..+.+|++++.+++..+.+++. .|.. .++.. +..+ +. .
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYF 225 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHC
Confidence 4456778999999997 4 68899999988788999999988877666532 2431 22221 1111 11 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+.+|+++-.-. ...+..+.+.|++||++++.
T Consensus 226 ~~gvD~v~d~vG---------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 226 PEGIDIYFDNVG---------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CCCcEEEEECCC---------HHHHHHHHHHhccCCEEEEE
Confidence 246898885321 13456677899999999864
No 329
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.34 E-value=0.37 Score=43.54 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=39.5
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
......++.+||-.|||. |..+..+++..+.+|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 345677899999999976 888888888777789999999998877754
No 330
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.26 E-value=0.15 Score=45.92 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---cC---CCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---YR---QLPKA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~~---~~~~~ 134 (288)
......++.+||=.|+|. |..+..+++..+.+ |++++.+++..+.+++ .|.. .++..+ .. .....
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRE 226 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcC
Confidence 344567888999999876 77888888876765 7899999988776643 2321 122111 11 11123
Q ss_pred CCCC-EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYD-RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD-~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+| +|+-. .+. ...+....+.|++||++++..
T Consensus 227 ~~~d~~v~d~-----~G~---~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 227 LRFDQLILET-----AGV---PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCCeEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 4677 55432 211 235666778999999988754
No 331
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.18 E-value=0.22 Score=44.28 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=57.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
.++.++|=+|||. |.++..+++..+++ |+++|.+++.++.+... . ++ |..+. ....+|+|+-.-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEECCC
Confidence 3577899899886 88888888876665 67789888776655431 1 11 11110 2346898886422
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
- ...+..+.+.|+++|++++.-.
T Consensus 210 ~--------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 D--------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C--------HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2345667789999999997543
No 332
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.11 E-value=0.38 Score=43.02 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=61.7
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---cCCCC-CCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---YRQLP-KAKKY 137 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~~~~~-~~~~f 137 (288)
.+...++.+||-.|||. |..+..+++..+. .+++++.+++..+.+++. +.. .++..+ ..... ..+.+
T Consensus 160 ~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 160 RAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCc
Confidence 34434788999899886 7788888887676 799999988887765442 321 222111 11222 22459
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+++..... ...++.+.+.|+++|+++..
T Consensus 233 d~vld~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 999864321 23456677899999998864
No 333
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.04 E-value=0.48 Score=41.20 Aligned_cols=102 Identities=18% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C--CCCCCCEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P--KAKKYDRIISCE 144 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~--~~~~fD~I~~~~ 144 (288)
.|+.|+=+| -.-..++.++-. ...+|..+|+++..++...+.+++.|+ +|++.+.-|+.+. | ....||+.+...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCc
Confidence 577899898 333344444443 456899999999999999999999998 5799999999874 4 458999998754
Q ss_pred chhhhCHhhHHHHHHHHhcccccC---cEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKD---GLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~ 175 (288)
.+.+ .....++.+=...||.- |.+.++.
T Consensus 230 -peTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 230 -PETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred -hhhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 3445 56677888888888876 7777644
No 334
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=94.03 E-value=1.2 Score=41.30 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=61.9
Q ss_pred HcCCCCCCEEEEEC-Cc-ccHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHc----CCCCceEEEEc----ccCC
Q 048309 64 KARVSKEHEVLEIG-CG-WGTFAIEVVRQTG---CNYTGITLSAEQMKYAEMKVNEA----GLQDHIRLYLC----DYRQ 130 (288)
Q Consensus 64 ~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~---~~v~giD~s~~~~~~a~~~~~~~----g~~~~v~~~~~----d~~~ 130 (288)
....+++.+|+=+| +| .|..+..+++..+ .+|+++|.+++.++.+++..... |. ...++.. +...
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHA 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHH
Confidence 34567888999887 45 5888888888633 37999999999998887752111 11 1112211 1111
Q ss_pred ----CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 131 ----LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 131 ----~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.....+|+|+.... ....+....+.++++|.+++.
T Consensus 248 ~v~~~t~g~g~D~vid~~g--------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVP--------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHhCCCCCCEEEEcCC--------CHHHHHHHHHHhccCCeEEEE
Confidence 112346998886321 023556667889988877653
No 335
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.94 E-value=0.16 Score=45.48 Aligned_cols=100 Identities=25% Similarity=0.328 Sum_probs=64.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----CCCCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----RQLPKAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----~~~~~~~~f 137 (288)
....+.++.+||-.|+|. |..+..+++..+.+++++..+++..+.+++. +...-+.....+. ........+
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 445677888999999875 8888888888788999998888877766442 2210011111111 111133569
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+++....- ...+..+.+.|+++|.++..
T Consensus 229 d~vld~~g~--------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 229 DVVIDATGN--------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 999875210 23456667889999998864
No 336
>PLN02827 Alcohol dehydrogenase-like
Probab=93.89 E-value=0.32 Score=44.68 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-----ccCC-CC--
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-----DYRQ-LP-- 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-----d~~~-~~-- 132 (288)
+.....++.+||-.|+|. |..+..+++..+. .|+++|.+++..+.+++ .|.. .++.. +... +.
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT---DFINPNDLSEPIQQVIKRM 259 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEcccccchHHHHHHHHH
Confidence 345677899999999876 7888888887665 58899999887776644 3431 12211 1111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQ 174 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 174 (288)
..+.+|+|+-.-. -...+..+.+.+++| |++++.
T Consensus 260 ~~~g~d~vid~~G--------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 260 TGGGADYSFECVG--------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred hCCCCCEEEECCC--------ChHHHHHHHHhhccCCCEEEEE
Confidence 1236898885321 122455666888998 999874
No 337
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.85 E-value=0.38 Score=42.85 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=64.3
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc----cCCC-C-
Q 048309 61 LIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD----YRQL-P- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d----~~~~-~- 132 (288)
+.......++.+||=.|. |.|..+..+++..+.+|++++.+++..+.+++ .|.. .++..+ ..+. .
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKK 202 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHH
Confidence 345566788999998883 46889999998878899999988887776644 3431 222211 1110 0
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+|+-. .+ ...+....+.|+++|+++..
T Consensus 203 ~~~~gvdvv~d~-----~G----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 203 ASPDGYDCYFDN-----VG----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred hCCCCeEEEEEC-----CC----HHHHHHHHHHhCcCcEEEEe
Confidence 23468888753 21 12346667899999999964
No 338
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.80 E-value=0.44 Score=43.50 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=64.3
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE--cccCC-CC--CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL--CDYRQ-LP--KA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~-~~--~~ 134 (288)
.+....+++.+||=.|||. |..+..+|+..+. +|+++|.+++..+.+++. |...-+.... .+..+ +. ..
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhC
Confidence 3455678899999999875 8888888887666 799999999988877543 3311011110 01101 11 12
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
+.+|+++-.-. -...+.++.+.+++| |++++...
T Consensus 254 ~g~d~vid~~G--------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIG--------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCC--------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 36898885421 023455666788886 98887543
No 339
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.79 E-value=0.7 Score=39.96 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=62.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRI 140 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I 140 (288)
......++.+||-.|||. |..+..+++..+.+ |++++.+++..+.+++. |....+ .... ........+|++
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~~~~~~d~v 163 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEIGGRGADVV 163 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhhcCCCCCEE
Confidence 345677889999999876 77888888876677 99999998887766543 211111 1110 011133569999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+....- ...+....+.|+++|.++...
T Consensus 164 l~~~~~--------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS--------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC--------hHHHHHHHHHhcCCcEEEEEe
Confidence 864211 224556668899999988643
No 340
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.71 E-value=2.6 Score=38.78 Aligned_cols=163 Identities=16% Similarity=0.237 Sum_probs=93.0
Q ss_pred CEEEEECCcc-cHHHHHH-HHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEV-VRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~l-a~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~ 144 (288)
.+||=||||. |...... +++...+|+..|-|.+..+.+..... .+++..+.|+.+.+ .-..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4789999975 6665544 54443799999999888776655432 26899999998874 235669999865
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCChHHHHh
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSLSKILA 224 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (288)
.-.+- ..+++.| -+-|+=++.+....+. ...+.+...+ .+...+-.
T Consensus 77 p~~~~-----~~i~ka~----i~~gv~yvDts~~~~~------------------------~~~~~~~a~~-Agit~v~~ 122 (389)
T COG1748 77 PPFVD-----LTILKAC----IKTGVDYVDTSYYEEP------------------------PWKLDEEAKK-AGITAVLG 122 (389)
T ss_pred Cchhh-----HHHHHHH----HHhCCCEEEcccCCch------------------------hhhhhHHHHH-cCeEEEcc
Confidence 43332 1333222 2345555543222211 1122222223 36666777
Q ss_pred hcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCCCCcCCCCCCCCcccch
Q 048309 225 LGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAYH 279 (288)
Q Consensus 225 ~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~~~~~~~p~~~~~~~~~ 279 (288)
.||++.+.+.+-.+.. ...|+ .+....+.....+.++ -+|+ ++-..|.
T Consensus 123 ~G~dPGi~nv~a~~a~--~~~~~--~i~si~iy~g~~g~~~--~~~l-~ya~tws 170 (389)
T COG1748 123 CGFDPGITNVLAAYAA--KELFD--EIESIDIYVGGLGEHG--DNPL-GYATTWS 170 (389)
T ss_pred cCcCcchHHHHHHHHH--HHhhc--cccEEEEEEecCCCCC--CCCc-cceeeec
Confidence 8898877765544333 33443 3444444444444434 3355 5655554
No 341
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.70 E-value=0.43 Score=44.53 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=55.9
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.|.+|+=+|+|. |......++..+.+|+.+|.++.....+.. .|. ++. ++.+. -..+|+|+..-.-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea--l~~aDVVI~aTG~- 277 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGF----RVM--TMEEA--AELGDIFVTATGN- 277 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHH--HhCCCEEEECCCC-
Confidence 788999999997 666666666678899999999865433322 232 221 22222 2468999875321
Q ss_pred hhCHhhHHHHHH-HHhcccccCcEEEEEe
Q 048309 148 AVGHEYMEEYFG-CCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 ~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 175 (288)
...+. .....+|+|++++...
T Consensus 278 -------~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 278 -------KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred -------HHHHHHHHHhcCCCCCEEEEcC
Confidence 22333 5668899999887743
No 342
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.65 E-value=0.64 Score=38.06 Aligned_cols=100 Identities=26% Similarity=0.353 Sum_probs=61.5
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-CC--------CceEEEEcccCCCCC
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-LQ--------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~d~~~~~~ 133 (288)
+|.=||+|+ |. ++..++. .|.+|+.+|.+++.++.+++.++. .+ +. .++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 356689987 53 4445555 489999999999999888877654 11 10 1233 23333332
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
...|+|+=. +.+.+ +...++++++.+.+.|+-.|...+.+.+
T Consensus 77 -~~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 -VDADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp -CTESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred -hhhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 267887743 34545 6678999999999999998887655543
No 343
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.58 E-value=0.12 Score=47.50 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=56.3
Q ss_pred cCCCCceEEEEcccCCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 115 AGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 115 ~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.++ ++++++++++.+.. +++++|.++....+.+++++...+.++++.+.++|||+++.-....+
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 355 68999999998854 57999999999999999999999999999999999999999766544
No 344
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=93.47 E-value=1.4 Score=39.03 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=63.7
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
++......++.+||=.|+|. |..+..+++..+.++++++.+++..+.+++ .|.+ .. .+.........+|+
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~--~~~~~~~~~~~~d~ 217 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE---TV--LPDEAESEGGGFDV 217 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---EE--eCccccccCCCCCE
Confidence 34556677889999888764 777777777778889999999988877765 2432 11 11111123357999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++-... -...+..+.+.|+++|.++.
T Consensus 218 vid~~g--------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 218 VVEATG--------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEECCC--------ChHHHHHHHHHhhcCCEEEE
Confidence 986421 02345556678899999987
No 345
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.42 E-value=0.7 Score=37.35 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=61.2
Q ss_pred ECCcccHHHHHHHHc-c-CCEEE--EEcCCHHHHHHH---HHHHHHcCCCCceE-EEEcccCCCC-----CCCCCCEEEE
Q 048309 76 IGCGWGTFAIEVVRQ-T-GCNYT--GITLSAEQMKYA---EMKVNEAGLQDHIR-LYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 76 iGcG~G~~~~~la~~-~-~~~v~--giD~s~~~~~~a---~~~~~~~g~~~~v~-~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
||=|.-.++..|+++ . +..++ ..|..++..+.. ..+++...- ..++ ....|+.++. ..+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 666777778888877 3 44554 455444333322 233332211 1233 3445776665 3578999999
Q ss_pred ccchhh-----------hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEA-----------VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++..-. ....-+..+++.+..+|+++|.+.++-..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 865322 01234577999999999999999996544
No 346
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.41 E-value=0.35 Score=41.71 Aligned_cols=87 Identities=9% Similarity=0.102 Sum_probs=61.9
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CCCCCEEEEc
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AKKYDRIISC 143 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~fD~I~~~ 143 (288)
..+.++...+|+|.-.|+++-.|.++ +-.|++||-.+ |.+ . +-.. +.++-...|...+.+ ....|-.+|.
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~-ma~---s-L~dt---g~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGP-MAQ---S-LMDT---GQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhc-ceEEEEeccch-hhh---h-hhcc---cceeeeeccCcccccCCCCCceEEee
Confidence 34668999999999999999999997 78999999654 321 1 1222 468889999988874 6789999986
Q ss_pred cchhhhCHhhHHHHHHHHhcccc
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLA 166 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~Lk 166 (288)
-+ +.+...-+.+..+|.
T Consensus 278 mV------EkP~rv~~li~~Wl~ 294 (358)
T COG2933 278 MV------EKPARVAALIAKWLV 294 (358)
T ss_pred hh------cCcHHHHHHHHHHHH
Confidence 43 333444444444444
No 347
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.40 E-value=0.54 Score=35.04 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=55.1
Q ss_pred CcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEccchhhh
Q 048309 78 CGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 78 cG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~~l~~~ 149 (288)
||.|..+..+++. .+..|+.+|.+++.++.+++. .+.++.+|..+.. .-.++|.+++...-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~--- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTDD--- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESSS---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccCC---
Confidence 5556666666664 344899999999987766543 2689999998854 33678888876431
Q ss_pred CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
......+....+-+.|...+++..
T Consensus 73 --d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 73 --DEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp --HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred --HHHHHHHHHHHHHHCCCCeEEEEE
Confidence 223334445556677777877643
No 348
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.34 E-value=1.5 Score=39.02 Aligned_cols=98 Identities=20% Similarity=0.170 Sum_probs=63.0
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~ 139 (288)
......++.+||-.||| .|..+..+++..+.+|++++.+++..+.+++. |.. .++...-.... ..+.+|+
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~ 228 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADV 228 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCE
Confidence 33567788899999987 58888888887778999999999887766432 221 12211111111 2246898
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++....- ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 8864211 224556678899999988753
No 349
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.29 E-value=1 Score=39.88 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--C
Q 048309 62 IEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P--K 133 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~--~ 133 (288)
.......++.+||=.| .|.|..+..+++..+.+|++++.+++..+.+++ .|.. .++...-.++ . .
T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHC
Confidence 3455677899999888 346888899998878899999988887777654 2431 2222111111 1 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+-.-. ...+....+.|+++|+++..
T Consensus 209 ~~gvd~vld~~g---------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 PDGIDCYFDNVG---------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCcEEEEECCC---------HHHHHHHHHhhccCCEEEEE
Confidence 256898885321 13456677889999998764
No 350
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.20 E-value=0.57 Score=42.68 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-c----cCC-CC-
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-D----YRQ-LP- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d----~~~-~~- 132 (288)
.+....+++.+||=+|+|. |..+..+++..+. .|+++|.+++..+.+++ .|.. .++.. + ..+ +.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPIQQVLVE 251 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHHHHHHHH
Confidence 3455677899999999875 7788888887677 79999999988877754 2431 12211 1 111 00
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
..+.+|+|+-.-. . ...+....+.|+++ |+++....
T Consensus 252 ~~~~g~d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 252 MTDGGVDYTFECIG--N------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HhCCCCcEEEECCC--C------hHHHHHHHHhhccCCCeEEEEcc
Confidence 1236898886321 0 23555666888887 98887543
No 351
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.16 E-value=0.27 Score=44.34 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC----CCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR----QLPKAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~----~~~~~~~ 136 (288)
......++.+||=.|+|. |..+..+++..+. .|++++.+++..+.+++. |...-+.....++. +......
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence 455677888999888764 7777788887677 899999999887777542 33110111111111 1112245
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++-...- ...++.+.+.|+++|.++...
T Consensus 242 ~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 242 VDVSFDCAGV--------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCEEEECCCC--------HHHHHHHHHhccCCCEEEEEc
Confidence 9999864221 224566678899999988744
No 352
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.14 E-value=0.23 Score=44.81 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~ 133 (288)
.....+++.+||-.|+|. |..+..+++..+. .++++|.+++..+.+++ .|.. .++..+-.+ +..
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTG 232 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhC
Confidence 445677889999999874 7788888887666 59999998877766654 3431 222211111 112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+++.... -...+..+.+.|+++|+++...
T Consensus 233 ~~~~d~vld~~g--------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 233 GKGVDAVIIAGG--------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCCcEEEECCC--------CHHHHHHHHHHhhcCCEEEEec
Confidence 346999885311 1235667778899999988643
No 353
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=93.08 E-value=0.3 Score=43.78 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=62.1
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc------cCCCCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD------YRQLPKAK 135 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d------~~~~~~~~ 135 (288)
.....++.+||-.|+|. |..+..+++..+.+ +++++.+++..+.+++ .|. ..++..+ +.......
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCC
Confidence 45567888999999876 77888888876776 9999988877665533 232 1222211 11112334
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... ....+..+.+.|+++|+++...
T Consensus 227 ~~d~vld~~g--------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG--------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5999986411 1234566678899999987643
No 354
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.91 E-value=0.99 Score=40.53 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----ccCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DYRQLP 132 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~~~~~ 132 (288)
...+..++.++|.+|.-+|||. |..++.-|+. ...+++++|+++..++.|++. |- .++++. |+.+..
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA---T~~vn~~~~~~vv~~i 247 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA---THFVNPKEVDDVVEAI 247 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC---ceeecchhhhhHHHHH
Confidence 5667788889999999999996 7777777766 456899999999999988875 32 233333 222211
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.++..|.++- ..+ + ...++.....+.++|..++.-...+.
T Consensus 248 ~~~T~gG~d~~~e-----~~G--~-~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 248 VELTDGGADYAFE-----CVG--N-VEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred HHhcCCCCCEEEE-----ccC--C-HHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3346777643 221 1 22555556677779998886655444
No 355
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=92.82 E-value=0.75 Score=41.87 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cCC-CC--CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YRQ-LP--KA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~-~~--~~ 134 (288)
.+...+.++.+||=+|+|. |..+..+++..+. +|+++|.+++..+.+++. |...-+.....+ ..+ +. ..
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhC
Confidence 3445677899999999875 7777888887666 799999998887777542 331001111100 000 11 12
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
..+|+|+-.-. -...+....+.|+++ |++++...
T Consensus 253 ~g~d~vid~~g--------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFECTG--------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEECCC--------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 46899885321 023456667888886 98887543
No 356
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.80 E-value=0.3 Score=43.27 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCE--EEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 52 VAQMRKHSLLIEKARVSKEHE--VLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~--vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
..+...+..++..-....+.. =+|||.|.-..--.+-.. .++...++|++...+..|+.+++++++.+.+.++..+.
T Consensus 83 ~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 83 LNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred hhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 344455566665544333322 378888775543333222 67889999999999999999999999988888887755
Q ss_pred CCC--------CCCCCCCEEEEccch
Q 048309 129 RQL--------PKAKKYDRIISCEMM 146 (288)
Q Consensus 129 ~~~--------~~~~~fD~I~~~~~l 146 (288)
.+. .++..||.++|+..+
T Consensus 163 ~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 163 QKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred hhhcchhhhccCccceeeEEecCCch
Confidence 331 134569999998654
No 357
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.77 E-value=0.4 Score=43.09 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=64.0
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----------CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----------RQ 130 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----------~~ 130 (288)
....+.++.+||-.|+|. |..+..+++..+.+ |++++.+++..+.+++. |.. .++..+- .+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH
Confidence 556778899999888876 78888888887776 89998888877766442 321 2221111 11
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
......+|+|+-...- ...+....+.|+++|+++...
T Consensus 229 ~~~~~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HhCCCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 2233569999864221 124556678999999988643
No 358
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.71 E-value=0.42 Score=47.34 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------c-----CCEEEEEcCCH---HHHHHH-----------HHHHHH-----cC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ--------T-----GCNYTGITLSA---EQMKYA-----------EMKVNE-----AG 116 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~--------~-----~~~v~giD~s~---~~~~~a-----------~~~~~~-----~g 116 (288)
+.-+|+|+|-|+|.+.....+. + .-+++++|..| +.+..+ ++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4468999999999976555421 1 23789999643 333322 222211 12
Q ss_pred C------CC--ceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhh-HHHHHHHHhcccccCcEEEE
Q 048309 117 L------QD--HIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 117 ~------~~--~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 173 (288)
+ .. ++++..+|+.+.- ....+|+++..+.-..-.++- -.++++.+.++++|||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1 01 3457778887633 335799999875322111111 26799999999999998874
No 359
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.55 E-value=0.96 Score=41.98 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=60.4
Q ss_pred HHHHHHcC-CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..+.+..+ ...|.+|+=+|+|. |......++..+++|+++|.++.....+. ..|. .+. +..+. -..
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~----~~G~----~v~--~leea--l~~ 250 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA----MDGF----RVM--TMEEA--AKI 250 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH----hcCC----EeC--CHHHH--Hhc
Confidence 33444333 25788999999997 77777777667889999999886543332 2232 222 22221 145
Q ss_pred CCEEEEccchhhhCHhhHHHHHH-HHhcccccCcEEEEEee
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFG-CCESLLAKDGLLVLQFS 176 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 176 (288)
.|+|++...- ...+. +....+|+|++++....
T Consensus 251 aDVVItaTG~--------~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 251 GDIFITATGN--------KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CCEEEECCCC--------HHHHHHHHHhcCCCCcEEEEECC
Confidence 7998874221 22333 46688999998887543
No 360
>PRK11524 putative methyltransferase; Provisional
Probab=92.40 E-value=0.15 Score=44.94 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=39.8
Q ss_pred ceEEEEcccCCCC---CCCCCCEEEEccchhh------h----CH----hhHHHHHHHHhcccccCcEEEEE
Q 048309 120 HIRLYLCDYRQLP---KAKKYDRIISCEMMEA------V----GH----EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 120 ~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~------~----~~----~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+++++|..+.. +++++|+|++...+.- . .. .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889888742 5679999999755321 0 00 12357889999999999999985
No 361
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.39 E-value=1.7 Score=38.62 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=63.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----PKAK 135 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~~~~ 135 (288)
......++.+||-+|+|. |..+..+++..+.+ +++++.+++..+.+++. +.. .++..+-.+. ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence 455677889999999764 77778888876666 89999998877766432 321 2222221111 1335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... ....+..+.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~--------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG--------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC--------ChHHHHHHHHHHhcCCEEEEEe
Confidence 7999996421 1235556678889999988643
No 362
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=92.35 E-value=0.3 Score=43.75 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=60.5
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---cc----CCCCCC
Q 048309 64 KARVSKEHEVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DY----RQLPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~----~~~~~~ 134 (288)
....+++.+||..|+| .|..+..+++..+. .+++++.++...+.+++. |. ..++.. +. ......
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~i~~~~~~ 234 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINPKNGDIVEQILELTGG 234 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcCCcchHHHHHHHHcCC
Confidence 3456678899988876 37788888887664 788998887776665542 22 122211 11 111233
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+|+++....- ...+.+..+.|+++|+++..
T Consensus 235 ~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF--------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 579999864211 13566667889999998864
No 363
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.09 E-value=1.1 Score=40.07 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=64.5
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-c---ccCC-CC--C
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-C---DYRQ-LP--K 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~---d~~~-~~--~ 133 (288)
......+|.+||=.|+ |.|..+..+++..|.+|++++.+++..+.+++.+ |.. .++. . +..+ +. .
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD---DAFNYKEEPDLDAALKRYF 218 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc---eeEEcCCcccHHHHHHHhC
Confidence 4456788999999986 4688889999887889999998888777776532 331 2222 1 2111 11 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+-. .+ ...+..+.+.|+++|+++..
T Consensus 219 ~~gvd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 PNGIDIYFDN-----VG----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CCCcEEEEEC-----CC----HHHHHHHHHHhccCcEEEEe
Confidence 2568988753 21 13456677999999998864
No 364
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.96 E-value=0.82 Score=41.61 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCCC-CCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQLP-KAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~~-~~~~fD~I~~~ 143 (288)
..++.+||-.|+|. |..+..+++..+.++++++.+++....+ .++.|.. .++. .+...+. ..+.+|+|+-.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 45788999899885 8888888888778898888776543222 1223431 1221 1111111 11358888853
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.. -...+..+.+.|++||+++...
T Consensus 255 ~g--------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 255 VS--------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CC--------CHHHHHHHHHHhcCCcEEEEeC
Confidence 22 1224566678999999998753
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.96 E-value=0.53 Score=43.30 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=42.4
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
.+.+++.++.+||-|.+|......++.+. ..+|++||+||.+....+-+..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 45677889999999999888888887775 5699999999999988776654
No 366
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.91 E-value=1.7 Score=39.59 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=63.3
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-----cCC-CC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-----YRQ-LP 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-----~~~-~~ 132 (288)
+.+.....++.+||=.|+|. |..+..+++..+. +|+++|.+++..+.+++ .|.. .++..+ ..+ +.
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~v~ 251 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT---EFVNPKDHDKPVQEVIA 251 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcccccchhHHHHHH
Confidence 33445677899999999875 7778888887676 79999999988777654 3431 222111 100 11
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
..+.+|+++-.-. ....+....+.+++| |++++...
T Consensus 252 ~~~~~~~d~vid~~G--------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 252 EMTGGGVDYSFECTG--------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred HHhCCCCCEEEECCC--------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 2236888875311 123455556788996 98887543
No 367
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.85 E-value=2.1 Score=38.31 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHcCCCCC--CEEEEECC--cccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C-
Q 048309 63 EKARVSKE--HEVLEIGC--GWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P- 132 (288)
Q Consensus 63 ~~~~~~~~--~~vLDiGc--G~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~- 132 (288)
+.....++ .+||=.|+ |.|..+..+++..++ +|++++.+++..+.+++. .|.. .++..+-.++ .
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~ 219 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRE 219 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHH
Confidence 33345555 89998885 468899999988777 799999998877666553 2431 2222211111 0
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+..+|+|+....- ..+..+.+.|+++|+++..
T Consensus 220 ~~~~gvd~vid~~g~---------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 220 LCPEGVDVYFDNVGG---------EISDTVISQMNENSHIILC 253 (345)
T ss_pred HCCCCceEEEECCCc---------HHHHHHHHHhccCCEEEEE
Confidence 12569999853211 1235667889999999864
No 368
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.83 E-value=1.8 Score=39.74 Aligned_cols=116 Identities=11% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHc----cCCEEEEEcC----CHHHHHHHHHHH----HHcCCCCc
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGT----FAIEVVRQ----TGCNYTGITL----SAEQMKYAEMKV----NEAGLQDH 120 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~----~~~~v~giD~----s~~~~~~a~~~~----~~~g~~~~ 120 (288)
.-+.|++.+.-...-+|+|+|.|.|. +...|+.+ +.-++|||+. +...++.+.+++ +..|++
T Consensus 98 aNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~-- 175 (374)
T PF03514_consen 98 ANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP-- 175 (374)
T ss_pred hhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--
Confidence 33667777776677799999999885 55566665 3348999999 777777666654 445775
Q ss_pred eEEEEc---ccCCCC------CCCCCCEEEEccchhhhCH-----h-hHHHHHHHHhcccccCcEEEEEe
Q 048309 121 IRLYLC---DYRQLP------KAKKYDRIISCEMMEAVGH-----E-YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 121 v~~~~~---d~~~~~------~~~~fD~I~~~~~l~~~~~-----~-~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|... +.+++. .++.+=+|-|...++|+.. + ....+++.+ +.|+|.-++++..
T Consensus 176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ 244 (374)
T PF03514_consen 176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQ 244 (374)
T ss_pred EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEee
Confidence 455543 444432 1222334445566788731 1 234566555 6789997666643
No 369
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=91.82 E-value=0.5 Score=42.94 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-------CC
Q 048309 61 LIEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-------QL 131 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-------~~ 131 (288)
+.......++.+||-.|+| .|..+..+++..+.. |++++.++...+.+++ .|.. .++..+-. .+
T Consensus 174 ~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~ 246 (363)
T cd08279 174 VVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDL 246 (363)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHH
Confidence 3344556788899988886 477778888876765 9999988887766643 2331 22222111 11
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....+|+++..-. ....+..+.+.|+++|+++...
T Consensus 247 ~~~~~vd~vld~~~--------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 247 TDGRGADYAFEAVG--------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCCCCCCEEEEcCC--------ChHHHHHHHHHhhcCCeEEEEe
Confidence 12456998885321 0234566678899999988653
No 370
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=91.77 E-value=1.3 Score=40.08 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=60.8
Q ss_pred HHcCC-CCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-------CCCC
Q 048309 63 EKARV-SKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-------RQLP 132 (288)
Q Consensus 63 ~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-------~~~~ 132 (288)
..+.. .++.+||=.|+|. |..+..+++..+. +|++++.+++..+.+++ .|...-+.....+. ....
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~ 245 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDIT 245 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHh
Confidence 33443 3788898888774 7777888887777 89999988877665542 34321011111111 1111
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+++-...- ...+....+.|+++|+++...
T Consensus 246 ~~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 246 GGRGADVVIEASGH--------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCCcEEEECCCC--------hHHHHHHHHHhccCCEEEEEc
Confidence 23569999854210 224455668899999998643
No 371
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.48 E-value=0.61 Score=43.10 Aligned_cols=107 Identities=17% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccCC----CCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYRQ----LPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~----~~~ 133 (288)
......++.+||=.|+|. |..+..+++..+.+ ++.+|.+++..+.+++. |.. .+... +..+ ...
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcC
Confidence 345677888888888875 77888888875655 66678888777777653 431 12111 1111 112
Q ss_pred CCCCCEEEEccchhh------hCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEA------VGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
...+|+++-.-.-.. ....+....++.+.+.+++||++++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 346898885432110 0001123467888899999999998654
No 372
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=91.36 E-value=4.7 Score=35.72 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=61.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
......++.+||=.|||. |..+..+++..+.++++++.+++..+.+++ .|.. .++.. ... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc-CCCcccEEE
Confidence 455677888888888775 666677777777899999988876666633 2321 11111 111 234688877
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.... ....++.+.+.|+++|+++...
T Consensus 231 ~~~~--------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAP--------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCC--------cHHHHHHHHHHhhcCCEEEEEc
Confidence 5311 1235667789999999999643
No 373
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.13 E-value=2 Score=38.20 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=70.6
Q ss_pred CEEEEECCcccHHHHHHHHcc---------------------CCEEEEEcCCH--HHHHHHHHHHHHc-----------C
Q 048309 71 HEVLEIGCGWGTFAIEVVRQT---------------------GCNYTGITLSA--EQMKYAEMKVNEA-----------G 116 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~---------------------~~~v~giD~s~--~~~~~a~~~~~~~-----------g 116 (288)
.+||.||.|.|.=...++... ..+++.||+.+ ..+......+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986544443321 13799999764 2333333333322 0
Q ss_pred -C--C--CceEEEEcccCCCCC-C-------CCCCEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 117 -L--Q--DHIRLYLCDYRQLPK-A-------KKYDRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 117 -~--~--~~v~~~~~d~~~~~~-~-------~~fD~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
. + -+++|.+.|+..... + .+.++|...+++.-+ +...-.+++.++...++||..++|.+..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0 0 247899999988762 1 257888877776543 3355678999999999999999997643
No 374
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.09 E-value=0.75 Score=37.67 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=58.9
Q ss_pred CEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCCCC-----C-----CCCC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQLP-----K-----AKKY 137 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~-----~-----~~~f 137 (288)
..|+.+|||-=+....+... .+..++-+|. |++++.-++.++..+. +.+.+++..|+.+.. . .+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 48999999998887777765 3667778885 6677766666665521 123567999998632 1 2344
Q ss_pred CEEEEccchhhhCHhhHHHHHHHH
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCC 161 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~ 161 (288)
-++++-+++.+++++....+++.+
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 578888899999888888887765
No 375
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.08 E-value=0.48 Score=43.11 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P--KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~--~~ 134 (288)
....+.++.+||-.|+|. |..+..+++..+. .++++|.++...+.+++ .|. ..++..+-.++ . ..
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~ 252 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA---THVINPKEEDLVAAIREITG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC---cEEecCCCcCHHHHHHHHhC
Confidence 344567888999888875 7788888887666 69999999887766644 232 12222111111 0 13
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+|+-.-.- ...+..+.+.|+++|.++...
T Consensus 253 ~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGV--------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCC--------cHHHHHHHHHhccCCEEEEeC
Confidence 568998853210 234566678899999988743
No 376
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.99 E-value=0.32 Score=45.52 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--------CCCCCCCE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--------PKAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--------~~~~~fD~ 139 (288)
.+..+|-+|-|.|.+...+-.+ +..++++++++|++++.|++.+....- .+..+...|..+. +.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4557788888889998888666 668999999999999999988743211 1345555555432 14568999
Q ss_pred EEEcc---chhhh--CHhh--HHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCE---MMEAV--GHEY--MEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~---~l~~~--~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++..- -.+.+ ++.. -..++..+...|.|.|.+++.-....
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 88631 11112 1122 35578889999999999998765543
No 377
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.97 E-value=3.1 Score=37.17 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~f 137 (288)
..+...++.+||=.|||. |..+..+++..+.+++.++.+++..+.+++ .|.. .++...-.++ .....+
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 229 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEALQELGGA 229 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHHHHhcCCC
Confidence 345677888999999775 777788888778899999998887776643 2321 2221111111 111358
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+++.... ....+....+.|+++|.++...
T Consensus 230 d~vi~~~g--------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 230 KLILATAP--------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CEEEECCC--------chHHHHHHHHHcccCCEEEEEe
Confidence 98885311 1234556678899999988743
No 378
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.86 E-value=0.42 Score=43.86 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=55.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
++.+|+=+|+|. |..+...++..+++|+.+|.+++..+.+.... + ..+.....+..++. .-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 456799999985 77777777766789999999987665544332 1 11221111112222 22478999975322
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
... ..+.-+-++..+.++||++++-
T Consensus 241 ~g~--~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 241 PGA--KAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CCC--CCCcCcCHHHHhcCCCCCEEEE
Confidence 111 1111122444466799987665
No 379
>PLN02494 adenosylhomocysteinase
Probab=90.82 E-value=1.3 Score=41.83 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=62.1
Q ss_pred HHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKARV-SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
++.+.+.-+. ..|++|+-+|+|+ |......++..+++|+++|.++.....+.. .|. .+. ++.+. -.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa--l~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EGY----QVL--TLEDV--VS 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cCC----eec--cHHHH--Hh
Confidence 4444544343 4688999999997 766666666678899999998865433322 232 221 22221 14
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..|+|++...-.+ -+..+..+.||+||.++....
T Consensus 309 ~ADVVI~tTGt~~-------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNKD-------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCcc-------chHHHHHhcCCCCCEEEEcCC
Confidence 6899987432222 233556689999999887543
No 380
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.72 E-value=2.2 Score=38.66 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=57.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCCC-CCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQLP-KAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~~-~~~~fD~I~~~ 143 (288)
..++.+|+-.|+|. |..+..+++..+.++++++.+++....+.+ ..|.. .++. .+...+. ....+|+++-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~---~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGAD---DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788998888775 888888888877888888888765544432 23431 1111 1111111 12357888753
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-. ....+..+.+.|+++|+++...
T Consensus 252 ~g--------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VP--------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CC--------chHHHHHHHHHhccCCEEEEEC
Confidence 21 0234555668899999988754
No 381
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.57 E-value=0.71 Score=41.03 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=51.3
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccchhh
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMMEA 148 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~ 148 (288)
+++|+-||.|.+..-+.+.....+.++|+++.+.+.-+.++. ....+|+.++. .++.+|+++....+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCCce
Confidence 689999999999998877522368899999998888877762 78899999876 1126999998776654
Q ss_pred h
Q 048309 149 V 149 (288)
Q Consensus 149 ~ 149 (288)
+
T Consensus 74 f 74 (335)
T PF00145_consen 74 F 74 (335)
T ss_dssp T
T ss_pred E
Confidence 4
No 382
>PTZ00357 methyltransferase; Provisional
Probab=90.56 E-value=1.2 Score=43.74 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred EEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH-HHcCC-------CCceEEEEcccCCCCCC----
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKV-NEAGL-------QDHIRLYLCDYRQLPKA---- 134 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~-~~~g~-------~~~v~~~~~d~~~~~~~---- 134 (288)
.|+-+|+|-|-+.....+. ...+|++||-++..+.....+. ....+ ..+|+++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5889999999876554432 3458999999966544444432 22233 23599999999998521
Q ss_pred --------CCCCEEEE--ccchhhhCHhhHHHHHHHHhccccc----CcE
Q 048309 135 --------KKYDRIIS--CEMMEAVGHEYMEEYFGCCESLLAK----DGL 170 (288)
Q Consensus 135 --------~~fD~I~~--~~~l~~~~~~~~~~~l~~~~~~Lkp----gG~ 170 (288)
+++|+||+ .++|..= +--.+.|..+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDN--ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDN--ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccc--cCCHHHHHHHHHhhhhhcccccc
Confidence 37999998 3333221 2234555556666665 675
No 383
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.43 E-value=0.97 Score=40.55 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----CCCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----RQLPKAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----~~~~~~~~ 136 (288)
......++.+||=.|+|. |..+..+++..+ .++++++.++...+.+++ .|...-+.....+. ..+.....
T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence 334566788888788764 667777777766 789999988877666553 23311112111121 11123356
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+++..- + . ...+..+.+.|+++|+++..
T Consensus 236 ~d~vld~~-----g--~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAV-----G--I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECC-----C--C-HHHHHHHHHhccCCcEEEEe
Confidence 99998542 1 1 22466677899999998864
No 384
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.99 E-value=2.2 Score=38.30 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=61.0
Q ss_pred CEEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------HcCCC-----CceEEEEcccCCCCCCCC
Q 048309 71 HEVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------EAGLQ-----DHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 71 ~~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------~~g~~-----~~v~~~~~d~~~~~~~~~ 136 (288)
.+|.=||+|+ ..++..++. .|.+|+..|.+++.++.++..++ +.++. .++++. .|+.+ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC
Confidence 5788899995 345555565 48999999999998877665443 12221 112211 11111 1256
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.|+|+-. +.+-+ +-...+++++-+.++|+..+..++.
T Consensus 84 aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 84 ADFIQES-APERE--ALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred CCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEECCC
Confidence 7888764 33443 5567889999999999885444333
No 385
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.99 E-value=1.1 Score=40.24 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc---CCCCCCCCCCEEE
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY---RQLPKAKKYDRII 141 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~fD~I~ 141 (288)
..++.+||-.|+|. |..+..+++..+. .|++++-+++....+++ .|...-+.....+. .+....+.+|+++
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vl 236 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEE
Confidence 35778888788765 7788888887676 68888877766655543 23210011111111 1122345799998
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..-. -......+.+.|+++|.++..
T Consensus 237 d~~g--------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 237 EMSG--------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred ECCC--------CHHHHHHHHHHhccCCEEEEE
Confidence 6421 023355566889999998864
No 386
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.97 E-value=1.1 Score=35.26 Aligned_cols=112 Identities=14% Similarity=-0.032 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+|+..++++++.....+| -|||+|=|.|..--++.+. ++.+|+.+|-.-..-. ...|+.-.++.+|+.+.
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~t 83 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SSTPPEEDLILGDIRET 83 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG---GGGEEES-HHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCCCchHheeeccHHHH
Confidence 788888888888876665 7999999999999999887 8889999995332211 11223446788887653
Q ss_pred C-----CCCCCCEEEEccchhhhCH--hhHHHHHHHHhcccccCcEEEE
Q 048309 132 P-----KAKKYDRIISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 132 ~-----~~~~fD~I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. ...+.-++.+....+.-.. ....-+-.-+..+|.|||.++.
T Consensus 84 l~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 84 LPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 2 1233334444332222100 0111122345688999998876
No 387
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.89 E-value=0.91 Score=38.23 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
..+.+++.++.-...-|.+||.|.|+.+..+......+...++.++..+.-.+-..+.+. .+..+..+|+..+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 345677777766778999999999999999987644578888888888777766666443 4788888888653
No 388
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.83 E-value=1.5 Score=38.18 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT------GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
.+.++.+.--+.+...++|+|||.|.++..++... ...++.||-...-. .+...+........++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 34444444445677899999999999999998762 35799999755433 233333333311256777788877
Q ss_pred CC
Q 048309 131 LP 132 (288)
Q Consensus 131 ~~ 132 (288)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 65
No 389
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.66 E-value=2.6 Score=37.20 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=63.7
Q ss_pred CEEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cCCC---------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AGLQ---------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g~~---------~~v~~~~~d~~~~~ 132 (288)
.+|-=||+|+ +.++..++.. |.+|+..|.+++.++.+++++++ .|.- .+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence 4788899996 3455555654 89999999999999887766432 1210 1111 1223322
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhccc-ccCcEEEEEeecCC
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL-AKDGLLVLQFSSTP 179 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~ 179 (288)
-...|+|+-. +.+.. +....++..+-..+ +|+..+...+.+.+
T Consensus 82 -~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 82 -FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred -hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 2567888764 34444 55677888888888 77776666554433
No 390
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.45 E-value=1.9 Score=39.57 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHH-HHHHHHHHHHcCCCCceEEEE-cccCCCC-CCCCCCEEEEc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQ-MKYAEMKVNEAGLQDHIRLYL-CDYRQLP-KAKKYDRIISC 143 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~-~~~a~~~~~~~g~~~~v~~~~-~d~~~~~-~~~~fD~I~~~ 143 (288)
+++.+|+-.|+|. |..+..+|+..+.+|++++.+++. .+.+ ++.|.. .++. .+...+. ..+.+|+++-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a----~~lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAI----DRLGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHH----HhCCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence 4788999899875 888888888878889999877653 3333 233431 1221 1111111 11358888864
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-. ....+..+.+.+++||+++...
T Consensus 250 ~G--------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 250 VS--------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CC--------cHHHHHHHHHhhcCCCEEEEEc
Confidence 21 1234566678899999998754
No 391
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=89.43 E-value=2.3 Score=38.72 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=61.8
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc--cc----CCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC--DY----RQLPK 133 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~--d~----~~~~~ 133 (288)
.......++.+||=.|+|. |..+..+++..+. .+++++.+++..+.+++. |...-+..... +. .++ .
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~-~ 250 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEM-T 250 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHH-h
Confidence 3445677889999888875 7777778877666 488899888877776432 33111111111 11 111 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccc-cCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA-KDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 175 (288)
.+.+|+++.... -...+....+.|+ ++|+++...
T Consensus 251 ~~~~d~vid~~g--------~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 DGGVDYAFEVIG--------SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCCcEEEECCC--------CHHHHHHHHHHhccCCCEEEEEe
Confidence 356898885321 0234556678888 999988753
No 392
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.20 E-value=1.6 Score=40.86 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=68.0
Q ss_pred CCCEEEEECCcccH--HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cC--CCC--CCCCCCE
Q 048309 69 KEHEVLEIGCGWGT--FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YR--QLP--KAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~--~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~--~~~--~~~~fD~ 139 (288)
.+..+.|+|+|.|. ++...... ....++.||.+..|.+......+...- +-....-. +. .++ ....||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCCCcccceee
Confidence 34578899988654 33333333 345799999999999988877765110 11111111 11 123 4456999
Q ss_pred EEEccchhhhCHh-hHHH-HHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEMMEAVGHE-YMEE-YFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~l~~~~~~-~~~~-~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++.+.+++++.. .... .-.-+....++|+.+++...+.+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999998432 2223 33445677789999998765544
No 393
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=88.91 E-value=1.3 Score=39.03 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=39.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE 114 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 114 (288)
+..|.+|+-||+|......++++. ..+|.+||+++..+...+-+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 457889999999999888888876 56999999999999877766543
No 394
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=88.89 E-value=1.4 Score=40.11 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCCCC
Q 048309 66 RVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKAKK 136 (288)
Q Consensus 66 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~~~ 136 (288)
...++.+||-.|+| .|..+..+++..+.+ +++++.+++..+.+++ .+.. .++..+-.+ ......
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCC
Confidence 34678888877876 477777788776666 9999988887766643 2321 222221111 113456
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|+..-. . ...+..+.+.|+++|+++..
T Consensus 257 ~d~vld~vg-------~-~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 257 VDVVVEALG-------K-PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCEEEEeCC-------C-HHHHHHHHHHHhcCCEEEEE
Confidence 999986411 0 12456667899999998864
No 395
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.86 E-value=4.2 Score=35.76 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=58.0
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--------CCC---------CceEEEEcccCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--------GLQ---------DHIRLYLCDYRQL 131 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------g~~---------~~v~~~~~d~~~~ 131 (288)
.+|.=||+|. |. ++..++. .+.+|+.+|.+++.++.+++.++.. .+. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH-
Confidence 3677899996 33 3444454 4789999999999888877653211 110 12221 222222
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.-...|+|+..-. +.. +....+++++...++++-.+...
T Consensus 81 -a~~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 81 -AVKDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred -HhcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEEEC
Confidence 1256788886532 222 34577888888888777755443
No 396
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=88.83 E-value=4.3 Score=36.31 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~~fD~ 139 (288)
..+...++.+|+=.|||. |..+..+++..+.++++++.+++..+.+++ .|.. .++...-.+. . ..+.+|+
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGAD---EFIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---EEecCcchhhhhhccCCceE
Confidence 344567788888788764 777777777777899999998887776643 2321 1121111111 1 2356888
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++....- ...+..+.+.|+++|.++...
T Consensus 236 v~~~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA--------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC--------cchHHHHHHHhcCCCEEEEEe
Confidence 8853211 123455568889999988743
No 397
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.80 E-value=7.1 Score=35.72 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---cc----CCCCCCC
Q 048309 65 ARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DY----RQLPKAK 135 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~----~~~~~~~ 135 (288)
...+++.+||=.|+|. |..+..+++..+. .|++++.+++..+.+++ .|...-+..... +. ..+....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCC
Confidence 3567888988888875 7777777877677 79999988875554443 343210111110 11 1122335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|+|+.... .....+..+.+.|+++|+++..
T Consensus 275 gvDvvld~~g-------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQVEAAG-------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEEECCC-------CcHHHHHHHHHHHHcCCEEEEE
Confidence 6999986421 1123456667888999999874
No 398
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.79 E-value=1.4 Score=39.48 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=60.3
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-------cCCCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-------YRQLPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-------~~~~~~~ 134 (288)
.....++.+|+=.|||. |..+..+++..+. .+++++.++...+.+++ .|.. .++... +......
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~ 235 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC
Confidence 45667788888788875 7778888887666 48999988765554443 3331 122111 1111233
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++.... -...+..+.+.|+++|.++...
T Consensus 236 ~~~d~il~~~g--------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 236 VGADAVLECVG--------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCCEEEECCC--------CHHHHHHHHHhhccCCEEEEec
Confidence 46898885421 1345667778899999988743
No 399
>PRK10083 putative oxidoreductase; Provisional
Probab=88.78 E-value=2.6 Score=37.60 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-CCC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAK 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~ 135 (288)
+.......++.+||=.|+|. |..+..+++. .+. .++++|.+++..+.+++. |...-+.....+... +. ...
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~ 227 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGI 227 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCC
Confidence 34455677889999999775 7777777774 365 588899888877766543 331001111111111 11 112
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... -...+....+.|+++|+++...
T Consensus 228 ~~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 228 KPTLIIDAAC--------HPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCCEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 3557664321 0234566678999999998743
No 400
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=88.66 E-value=1.3 Score=39.67 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-------CCCC
Q 048309 63 EKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-------QLPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-------~~~~ 133 (288)
..+.+.++.+||=.|+| .|..+..+++..+.+ +++++.+++..+.+++ .+.. .++..+-. ....
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhC
Confidence 44567788899888876 477777888877777 8899888887776643 2321 22222111 1123
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+|+....- ...+..+.+.|+++|+++...
T Consensus 232 ~~~vd~vld~~~~--------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 232 GRGADVVIVATGS--------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CcCCCEEEECCCC--------hHHHHHHHHHhhcCCEEEEEe
Confidence 3458999864221 234555668889999988643
No 401
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.59 E-value=0.97 Score=40.50 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhh
Q 048309 73 VLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
|+|+-||.|.++.-+.+. |.+ +.++|+++.+++.-+.++. . .++.+|+.++. .-..+|+++....+..+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 589999999999888764 566 4579999998887776652 2 44567887765 22468999887655444
No 402
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.46 E-value=3.6 Score=30.96 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=58.7
Q ss_pred CCEEEEECCccc-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWG-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
..+|+|+|-|-= ..+..|+++ |+.++++|+.+. +. + ..++++..|+.+.. .-...|+|.|.-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~-------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-- 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK-------TA---P--EGLRFVVDDITNPNISIYEGADLIYSIR-- 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc-------cC---c--ccceEEEccCCCccHHHhhCccceeecC--
Confidence 349999999974 456666665 899999999886 11 1 24789999998865 346789998852
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++++...+-++.+.+ |..+++...+
T Consensus 79 ---pppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 79 ---PPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred ---CCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 2245555555555544 4555665444
No 403
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.09 E-value=5.7 Score=35.23 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.+.+|+=+|+|. |..+...++..+++|+.+|.++...+.++ ..|. ++. +..++. .-..+|+|+..-..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT----EMGL----SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HcCC----eee--cHHHHHHHhCCCCEEEECCCh
Confidence 578999999986 55555555556889999999987655443 2332 222 112222 22579999985321
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. -+-++..+.++||++++-
T Consensus 221 ~--------~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 221 L--------VLTKEVLSKMPPEALIID 239 (296)
T ss_pred h--------hhhHHHHHcCCCCcEEEE
Confidence 1 122445577889886653
No 404
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.06 E-value=4.4 Score=35.62 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=58.7
Q ss_pred EEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-CC--------CceEEEEcccCCCCC
Q 048309 72 EVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-LQ--------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 72 ~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~d~~~~~~ 133 (288)
+|.=||+|. | .++..+++. +.+|+.+|.+++.++.+.+.... .+ +. .++++ ..|..+ .
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--A 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH--h
Confidence 577789985 3 344555554 78999999999999887654321 11 00 01221 122221 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+..-. +.. +....++.++.+.++|+..+...+.+
T Consensus 79 ~~~aD~Vi~avp-e~~--~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 VADADLVIEAVP-EKL--ELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred hcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 256898886432 222 33567788888888888766554444
No 405
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=88.05 E-value=2.1 Score=37.33 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=60.1
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++..|+-.|| +.|..+..+++..++.+++++.++...+.+++ .|.. .++..+-.+ ....
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGAD---HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCc---eeeecCCccHHHHHHHHcCC
Confidence 345667889999998 35777777777778899999998887766643 2321 112111111 1123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|.++....- ..+..+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~g~---------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 207 RGVDVVYDPVGG---------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CCcEEEEECccH---------HHHHHHHHhhccCCEEEEEc
Confidence 468888764221 23445567889999988643
No 406
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.98 E-value=3.8 Score=36.08 Aligned_cols=88 Identities=23% Similarity=0.163 Sum_probs=53.5
Q ss_pred CEEEEECCcc--cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 71 HEVLEIGCGW--GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGcG~--G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+|+-+|.|- |.++..+.+. ....++|.|.+....+.+.+. |+. .-...+. ........|+|+..-.+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~---d~~~~~~-~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVI---DELTVAG-LAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Ccc---cccccch-hhhhcccCCEEEEeccHH
Confidence 5788899885 4555666554 444578999988777666432 221 1111111 011335789998865555
Q ss_pred hhCHhhHHHHHHHHhcccccCcEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
.. .++++++...|++|..+
T Consensus 76 ~~-----~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 AT-----EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HH-----HHHHHHhcccCCCCCEE
Confidence 44 77888888888877643
No 407
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=87.94 E-value=1.2 Score=39.85 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC----CCCCCCCCCEE
Q 048309 67 VSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR----QLPKAKKYDRI 140 (288)
Q Consensus 67 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~----~~~~~~~fD~I 140 (288)
..++.+|+-.|+| .|..+..+++..+.+ |++++.++...+.+++. |...-+.....+.. .+.....+|++
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4577888877776 377777788776775 88888877666655432 32100111111111 11233569999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.... . ...+..+.+.|+++|.++...
T Consensus 235 ld~~g----~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 235 LEMSG----A----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EECCC----C----HHHHHHHHHhhcCCCEEEEEc
Confidence 86411 0 234566678899999987643
No 408
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=87.91 E-value=2.1 Score=38.16 Aligned_cols=95 Identities=25% Similarity=0.334 Sum_probs=58.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc------cCCCCCCCCC
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD------YRQLPKAKKY 137 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d------~~~~~~~~~f 137 (288)
...++.+||=.|+|. |..+..+++..+ .+|++++.+++..+.+++ .|.. .++..+ +..+.....+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCC
Confidence 355788999888664 666677777655 789999888877665533 3431 122111 1112233469
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+++..-.- ...+..+.+.|+++|+++...
T Consensus 237 dvvld~~g~--------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 237 DAVIDFVGS--------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CEEEEcCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 999863211 234566678889999998643
No 409
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.82 E-value=1.7 Score=34.28 Aligned_cols=54 Identities=6% Similarity=0.135 Sum_probs=31.7
Q ss_pred EECCccc--HHHHHHH--Hc-cCCEEEEEcCCHHHHHHHHHH--HHHcCCCCceEEEEccc
Q 048309 75 EIGCGWG--TFAIEVV--RQ-TGCNYTGITLSAEQMKYAEMK--VNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 75 DiGcG~G--~~~~~la--~~-~~~~v~giD~s~~~~~~a~~~--~~~~g~~~~v~~~~~d~ 128 (288)
|||++.| .....+. .. ++.+|+++|++|...+..+++ +.-+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6555543 22 567999999999999988888 54443222355555443
No 410
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.71 E-value=2.6 Score=41.34 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=59.0
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+|+=+|+|. |..........+.+++.+|.+++.++.+++ .| ..++.+|..+.. .-++.|++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 4677777775 554333323357799999999999887764 23 578999998854 335788887752
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.- ++....+....+.+.|...++...
T Consensus 473 ~d-----~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 473 NE-----PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred CC-----HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 21 222223334445677888888744
No 411
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.54 E-value=13 Score=29.88 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
++.+|+-|||=+-.....-...++.+++.+|.+... +..+ ++ .++.-|..... ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 557999999977655444311256789999998753 2222 23 56666666532 34799999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+ +..+-.......+.-++++++.+++.+.
T Consensus 94 PPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 887 5545566677777777789899888543
No 412
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.47 E-value=14 Score=30.92 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=59.6
Q ss_pred CCCEEEEECCcccHHHHHHHH---ccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVR---QTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~---~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
++++||-.|++. ..+..+++ ..+.+|++++-+++..+...+..... .++.++.+|+.+.. .-
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 457899888753 33333332 25889999999887666554444332 25788899987642 11
Q ss_pred CCCCEEEEccchhhh-CH---hh-----------HHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAV-GH---EY-----------MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~-~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+..|.++........ +. ++ ...+++.+...++++|.+++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356888765532110 00 11 1123455556667788777644
No 413
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.43 E-value=7.6 Score=34.16 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=56.7
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc----------CC---------CCceEEEEcccC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA----------GL---------QDHIRLYLCDYR 129 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----------g~---------~~~v~~~~~d~~ 129 (288)
.+|.=||+|. |. ++..++. .+.+|+.+|.+++.++.+++.+... +. ..++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-
Confidence 4688899995 44 4455555 4789999999999998776544321 11 0011111 122
Q ss_pred CCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 130 QLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 130 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
..-...|+|+..- .+.. +....+++++...++++..++
T Consensus 81 --~~~~~aDlVieav-~e~~--~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 --ESLSDADFIVEAV-PEKL--DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred --HHhCCCCEEEEcC-cCcH--HHHHHHHHHHHhhCCCCeEEE
Confidence 1124578888642 2222 345778888888888877654
No 414
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=87.34 E-value=9.1 Score=34.10 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=58.6
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++.+||=.|+|. |..+..+++..+. ++++++.+++..+.+++ .|. ..+..+-.+ ....
T Consensus 162 ~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~ 233 (344)
T cd08284 162 RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEG 233 (344)
T ss_pred hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCC
Confidence 35566788988888764 6677777777675 79999888766655443 232 112221111 1133
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+|+++-...- ...+....+.|+++|+++..
T Consensus 234 ~~~dvvid~~~~--------~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 234 RGADVVLEAVGG--------AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHhcccCCEEEEE
Confidence 569998863210 23456667888999998764
No 415
>PRK13699 putative methylase; Provisional
Probab=87.31 E-value=0.65 Score=39.54 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred eEEEEcccCCCC---CCCCCCEEEEccchhh-----hC--------HhhHHHHHHHHhcccccCcEEEE
Q 048309 121 IRLYLCDYRQLP---KAKKYDRIISCEMMEA-----VG--------HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 121 v~~~~~d~~~~~---~~~~fD~I~~~~~l~~-----~~--------~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++++++|..+.- +++++|+|++.....- .+ .+-....+.+++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 356778886642 6789999998754420 00 02245788999999999998876
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.19 E-value=9.3 Score=33.42 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=57.9
Q ss_pred EEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-------HHcCC-C--------CceEEEEcccCCCCC
Q 048309 72 EVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-------NEAGL-Q--------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 72 ~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~-------~~~g~-~--------~~v~~~~~d~~~~~~ 133 (288)
+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++++ .+.|. . .++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577789985 4555666664 779999999999987665432 22221 1 02221 223222
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-...|+|+..- .+.+ ....++++++.+.++|+..+..
T Consensus 80 ~~~aDlVi~av-~e~~--~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 80 LKDADLVIEAA-TENM--DLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred hccCCeeeecc-cccH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 25678887642 2222 3346889999999998876644
No 417
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.16 E-value=4.8 Score=39.70 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=59.9
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+|+=+|||. |..........+..++.+|.+++.++.+++. ...++.+|..+.. .-+++|++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 5788899986 6654443333477899999999998877652 3578999998864 235788887753
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.- ++....+....+.+.|.-.+++..
T Consensus 473 ~d-----~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DD-----PQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CC-----HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 21 222333333445556776666643
No 418
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=87.03 E-value=4.1 Score=36.45 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----ccCC-CC--CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DYRQ-LP--KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~~~-~~--~~ 134 (288)
......++.+||=.|+|. |..+..+++..+.++++++.+++..+.+++ .|.. +++.. +... +. ..
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 231 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTG 231 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhC
Confidence 344566788999889764 777788888778899999989887776643 2431 22221 1111 11 11
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+|+++..-. -...+....+.|+++|.++..
T Consensus 232 ~~~d~vi~~~g--------~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 232 GGAHVSVDALG--------IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CCCCEEEEcCC--------CHHHHHHHHHHhhcCCEEEEe
Confidence 27999886421 023455667889999998864
No 419
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=86.97 E-value=2.1 Score=40.47 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=55.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
-.|++|+=+|+|. |......++..+++|+.+|.++.....+.. .|. ++. ++.++ -...|+|++...-
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~leel--l~~ADIVI~atGt 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EGY----QVV--TLEDV--VETADIFVTATGN 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cCc----eec--cHHHH--HhcCCEEEECCCc
Confidence 4688999999997 665555555578899999888765433321 232 221 22222 2578999875322
Q ss_pred hhhCHhhHHHHH-HHHhcccccCcEEEEEe
Q 048309 147 EAVGHEYMEEYF-GCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~ 175 (288)
.+ ++ .+....+|||++++-..
T Consensus 320 ~~--------iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 320 KD--------IITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred cc--------ccCHHHHhccCCCcEEEEcC
Confidence 22 22 35568899999888743
No 420
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=86.96 E-value=2.4 Score=37.11 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=59.7
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++.+||=.|+| .|..+..+++..+.+ +++++.+++..+.+++ .|.. .++...-.+ +...
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~~ 196 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTGG 196 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcCC
Confidence 4556788888888865 367777777777778 9999888776664432 3331 222211111 1133
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++....- ...+....+.|+++|.++...
T Consensus 197 ~~vd~vld~~g~--------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 197 AGADVVIEAVGH--------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEc
Confidence 569999864211 224555668899999988743
No 421
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.87 E-value=11 Score=33.09 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=59.3
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CC-C--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------GL-Q--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|. | .++..++. .+.+|+.+|.+++.++.+.+.+... +. + .++++ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 4688899986 3 34455555 4789999999999888765543221 21 0 11222 223322
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+..-. +.. +....+++++...++++..++..+.+
T Consensus 81 -~~~aD~Vieavp-e~~--~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 -LADCDLVIEAAT-EDE--TVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred -hcCCCEEEEcCc-CCH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 246888886521 211 33567788888899998876644433
No 422
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.85 E-value=5.1 Score=35.10 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=51.8
Q ss_pred EEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhh
Q 048309 72 EVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 72 ~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 149 (288)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+.+. |. +.....+.. .-...|+|+..-...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~---~~~~aDlVilavp~~-- 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER----GL---VDEASTDLS---LLKDCDLVILALPIG-- 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CC---cccccCCHh---HhcCCCEEEEcCCHH--
Confidence 466788885 4456666654 77999999999887666432 22 111111111 125689998865433
Q ss_pred CHhhHHHHHHHHhcccccCcEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l 171 (288)
...++++++...++++..+
T Consensus 69 ---~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 69 ---LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHhCCCCcEE
Confidence 3356677887888776433
No 423
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=86.53 E-value=12 Score=33.64 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----CC--CCCCCCE
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LP--KAKKYDR 139 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~--~~~~fD~ 139 (288)
.++.+||-.|+|. |..+..+++..+. .|++++.+++..+.+++ .|.. .++...-.+ +. ..+.+|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcE
Confidence 4678898888874 7778888887666 78999988887766643 2331 222211111 11 1236899
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++.... ....+..+.+.|+++|+++..
T Consensus 247 vid~~g--------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 247 VIDFVN--------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEECCC--------CHHHHHHHHHHhhcCCeEEEE
Confidence 886421 023466667889999998864
No 424
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.33 E-value=5.7 Score=35.29 Aligned_cols=87 Identities=25% Similarity=0.248 Sum_probs=51.7
Q ss_pred CEEEEECCcc-cH-HHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
.+|.=||+|. |. ++..+.+. + .+|+++|.+++..+.+++ .|.. .. ...+..+ .-...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~--~~~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAE--AVKGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHH--HhcCCCEEEECCCH
Confidence 5788899986 43 44444443 3 489999999987665543 3321 11 1112111 12468999876544
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.. ...+++++...+++|..++
T Consensus 77 ~~-----~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 77 GA-----SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HH-----HHHHHHHHHhhCCCCCEEE
Confidence 33 3556677777788887554
No 425
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.26 E-value=1.8 Score=35.64 Aligned_cols=98 Identities=10% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHHHHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
+.+........++.+|-+|.- ||.....+.+. .++|+.+|+.|.+... ++++++|..+ . .+..+.+
T Consensus 34 ~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~-~~~~G~~ 100 (254)
T COG4017 34 QAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL--L-KFIRGEV 100 (254)
T ss_pred HHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh--c-CCCCCce
Confidence 333334444567899999976 78888888775 7899999999976432 2345666555 1 1256889
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+|+-.-.+..+.++.+ +-+.| ++|++.+...
T Consensus 101 DlivDlTGlGG~~Pe~L--------~~fnp-~vfiVEdP~g 132 (254)
T COG4017 101 DLIVDLTGLGGIEPEFL--------AKFNP-KVFIVEDPKG 132 (254)
T ss_pred eEEEeccccCCCCHHHH--------hccCC-ceEEEECCCC
Confidence 99998877777754333 33444 4566655443
No 426
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.19 E-value=15 Score=31.44 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=58.4
Q ss_pred CCCEEEEECCccc-HHH----HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 69 KEHEVLEIGCGWG-TFA----IEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G-~~~----~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
.++.+|-.|+++| ..+ ..+++ .+++|+.++.++...+..++..++.+ .+.++..|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-LGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-cCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 4678999997642 333 34444 47899888887654333333333222 3457778887642
Q ss_pred CCCCCCEEEEccchhh----------hCHhhHHHH-----------HHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEA----------VGHEYMEEY-----------FGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~----------~~~~~~~~~-----------l~~~~~~LkpgG~l~~~~ 175 (288)
.-+..|+++.+..+.. .+.++.... .+.+...|+.+|.++...
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1257899987754321 122233222 345556667778776543
No 427
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.15 E-value=6.9 Score=34.55 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=57.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+.||--|.|.|. .+..+|++ ++.++..|++++..+...+.++..| ++.....|+.+.. .-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57889988888764 45666765 7899999999999888888887765 6889999997742 23
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678888887644
No 428
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.07 E-value=2.2 Score=38.01 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCC----C
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQ----L 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~----~ 131 (288)
...+..+...+|.++.-+|+|. |.....-++. ...+++|||++++-.+.|++. |.+ ++++- |..+ .
T Consensus 182 GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaT---e~iNp~d~~~~i~ev 254 (375)
T KOG0022|consen 182 GAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GAT---EFINPKDLKKPIQEV 254 (375)
T ss_pred hhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Ccc---eecChhhccccHHHH
Confidence 4455667788999999999987 6655555655 556899999999999888765 332 23221 3333 0
Q ss_pred --C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEeec
Q 048309 132 --P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFSS 177 (288)
Q Consensus 132 --~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 177 (288)
+ .++.+|.-+- .++ ..+.++++....+.| |.-++.-..
T Consensus 255 i~EmTdgGvDysfE-----c~G---~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 255 IIEMTDGGVDYSFE-----CIG---NVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred HHHHhcCCceEEEE-----ecC---CHHHHHHHHHHhhcCCCeEEEEEec
Confidence 1 3466776552 221 123344444555667 776664443
No 429
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=85.50 E-value=4 Score=36.00 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cC----CCCCC
Q 048309 63 EKARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YR----QLPKA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~----~~~~~ 134 (288)
......++.++|-.|.+ .|..+..++...+.+++.++.++...+.++. .+.. ..+-..+ .. .....
T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~ 233 (342)
T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD--YVIDYRKEDFVREVRELTGK 233 (342)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--eEEecCChHHHHHHHHHhCC
Confidence 34556778899988865 5777777777678899999988877665532 2321 1111111 10 01123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|.++....- ..+..+.+.|+++|.++...
T Consensus 234 ~~~d~~i~~~g~---------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 234 RGVDVVVEHVGA---------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCCcEEEECCcH---------HHHHHHHHHhhcCCEEEEEe
Confidence 468988865331 23445567889999988754
No 430
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=85.44 E-value=1.5 Score=38.94 Aligned_cols=91 Identities=9% Similarity=0.036 Sum_probs=54.5
Q ss_pred CCCEEEEE--CCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCCCCCC
Q 048309 69 KEHEVLEI--GCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKAKKYD 138 (288)
Q Consensus 69 ~~~~vLDi--GcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~~~fD 138 (288)
++..++=+ |+| .|..+..+++..+.++++++.+++..+.+++ .|.. .++..+-.++ .....+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCc
Confidence 34444433 555 4888888888878899999999887777755 2331 2232221111 1234689
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+++-.-. .. ......+.|+++|+++...
T Consensus 215 ~vid~~g-----~~----~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDAVG-----GG----LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEECCC-----cH----HHHHHHHhhCCCCEEEEEE
Confidence 8885322 11 1233457789999988754
No 431
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=85.11 E-value=2.2 Score=38.20 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=58.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---cc----CCCCCCCCCC
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DY----RQLPKAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~----~~~~~~~~fD 138 (288)
.++.+|+-.|+|. |..+..+++..+. .|++++.+++..+.+++. |.. .++.. +. ..+.....+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC
Confidence 4678888788775 7778888887666 688888888766655442 331 12211 11 1122345789
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+....- ...+..+.+.|+++|.++....
T Consensus 235 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 235 VGLEMSGA--------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 99863210 2345556688999999988643
No 432
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.99 E-value=4 Score=39.62 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=56.2
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+++=+|||. |.......+..+.+++.+|.+++.++.+++. ....+.+|..+.. .-+++|.+++.-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 5777788885 5543333332477899999999988777642 3689999998853 235888776532
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.- ++....+-.+.+...|...++..
T Consensus 490 ~~-----~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 490 PN-----GYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred CC-----hHHHHHHHHHHHHHCCCCeEEEE
Confidence 11 11122233333555677777764
No 433
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=84.89 E-value=12 Score=33.33 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=58.8
Q ss_pred HHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-----CCCCC
Q 048309 63 EKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-----LPKAK 135 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-----~~~~~ 135 (288)
....+.++.+||-.|+ | .|..+..+++..++++++++.+. ..+.+ +..|.. .+...+-.. .....
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~----~~~g~~---~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAV----RALGAD---TVILRDAPLLADAKALGGE 242 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHH----HhcCCe---EEEeCCCccHHHHHhhCCC
Confidence 4456778899999997 3 47788888888788898888544 44433 233431 222111111 11335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|+++.... ...+..+.+.|+++|.++..
T Consensus 243 ~~d~vi~~~g---------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 243 PVDVVADVVG---------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCcEEEecCC---------HHHHHHHHHHhccCCEEEEe
Confidence 6999986422 12455667899999998864
No 434
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=84.88 E-value=1.5 Score=42.30 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---------CCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---------KAK 135 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------~~~ 135 (288)
+.++..|||+||.+|.+..-.++. .+.-|+|+|+.|-- .+ +++.-++.|+..-. ..-
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~-~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PI-PNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cC-CccchhhhhhhHHHHHHHHHHHHHhC
Confidence 457788999999999998887776 56679999987621 12 35666666664321 123
Q ss_pred CCCEEEEccchh----hhC-----HhhHHHHHHHHhcccccCcEEEE
Q 048309 136 KYDRIISCEMME----AVG-----HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 136 ~fD~I~~~~~l~----~~~-----~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+.|+|+..++-. +.. ..-.-..++-+...|+.||.++-
T Consensus 110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 468888754321 110 01123356666788899999543
No 435
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=84.88 E-value=1.3 Score=33.97 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCEEEEECCccc-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWG-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
..+|+|+|-|.- ..+..|.+ .|..|+++|+.+. .+. . .+.++..|+.+.. .-...|+|.+.-.-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~-~G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKE-RGFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHH-HS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHH-cCCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 349999999974 45555555 4799999999986 112 2 4678999998854 23589999986432
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.++...+.++.+. -|.-+++...+.
T Consensus 81 -----~El~~~il~lA~~--v~adlii~pL~~ 105 (127)
T PF03686_consen 81 -----PELQPPILELAKK--VGADLIIRPLGG 105 (127)
T ss_dssp -----TTSHHHHHHHHHH--HT-EEEEE-BTT
T ss_pred -----hHHhHHHHHHHHH--hCCCEEEECCCC
Confidence 3334444444332 267777766553
No 436
>PRK12939 short chain dehydrogenase; Provisional
Probab=84.83 E-value=15 Score=30.82 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++++|=.|+ +|..+..+++. .++++++++.+++..+...+.++..+ .++.++.+|+.+.. .-
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578887775 44444444432 47899999988877665555554433 36889999997643 01
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++....
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 47899887643
No 437
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.59 E-value=4.9 Score=34.11 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=45.7
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
+++=+|||. |. ++..|.+ .+..|+.+|.+++.++..... . .....+++|..+.. .-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~~~~~~~~~--~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEERVEEFLAD--E----LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHHHHHHHhhh--h----cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577899986 44 4455555 478999999999887663221 0 14789999998743 34689999875
No 438
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.45 E-value=8.6 Score=35.97 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=46.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
...+++=+|+|. |..........+..|+.+|.+++.++..++.. ..+.++.+|..+.. .-..+|.|++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 457888898865 33322222224789999999999887665542 24678999987643 3357888877
Q ss_pred c
Q 048309 143 C 143 (288)
Q Consensus 143 ~ 143 (288)
.
T Consensus 304 ~ 304 (453)
T PRK09496 304 L 304 (453)
T ss_pred C
Confidence 5
No 439
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.36 E-value=3.6 Score=37.08 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC---CC-CCCEEEEccc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK---AK-KYDRIISCEM 145 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~---~~-~fD~I~~~~~ 145 (288)
..+++|+-||.|.+..-+....-.-+.++|+++..++.-+.+... ..+...|+..+.. .. .+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 458999999999998777665223578999999988877766532 4677788876651 12 8999999888
Q ss_pred hhhh
Q 048309 146 MEAV 149 (288)
Q Consensus 146 l~~~ 149 (288)
++.+
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 7766
No 440
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.16 E-value=11 Score=38.08 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=65.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|-=||+|+ | .++..++. .|..|+.+|.+++.++.+.++++.. | ++ .++++. .|+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 4788899997 3 34555555 4899999999999998877665431 1 11 122222 12221
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+=. +.+.+ +...++++++-..++|+..|.-++.+
T Consensus 412 -~~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 -FKNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred -hccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2467777632 45555 66788999999999999887765544
No 441
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=84.08 E-value=14 Score=34.10 Aligned_cols=96 Identities=8% Similarity=0.071 Sum_probs=62.8
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
+|+-++=..|.++..++.+ +.. ...| |--.-...+++++.+|++.. ++.+ +..+. .++.+|+|+....= +
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~-~~~~~d~vl~~~PK---~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KPY-SIGD-SYISELATRENLRLNGIDESSVKFL--DSTAD-YPQQPGVVLIKVPK---T 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CCC-eeeh-HHHHHHHHHHHHHHcCCCcccceee--ccccc-ccCCCCEEEEEeCC---C
Confidence 7999999999999999865 221 2233 33344556777888887533 3333 22222 33569998874321 1
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....+..+..+...|.||+.+++...
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 14567788899999999999876443
No 442
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.94 E-value=17 Score=31.63 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCC
Q 048309 65 ARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKY 137 (288)
Q Consensus 65 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~f 137 (288)
....++.+||=.|+ +.|..+..+++..+.+|++++.+++..+.+++ .|.. .++. +-.++. ....+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~~~~i~~~~~~~ 209 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVI-DDGAIAEQLRAAPGGF 209 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEe-cCccHHHHHHHhCCCc
Confidence 34667889998885 46888888988888899999988877666533 3431 1211 111110 13568
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+++.... ...+..+.+.|+++|+++..
T Consensus 210 d~vl~~~~---------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLELVG---------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEECCC---------hHHHHHHHHHhccCCEEEEE
Confidence 98885421 13456667899999998764
No 443
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.83 E-value=13 Score=32.54 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---DHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
+|+=+|+|. |. ++..|++ .+.+|+.++-+++.++..++ .|+. ........-..+......+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 578899986 44 4455555 47899999987766554432 2331 1110000001111112678988875332
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+...+++.+...+.++..+++
T Consensus 77 -----~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 77 -----YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -----ccHHHHHHHHhhhcCCCCEEEE
Confidence 2346677777777877766654
No 444
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=83.55 E-value=0.7 Score=38.82 Aligned_cols=92 Identities=9% Similarity=0.134 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
....+++.+.+.++...+|.--|.|..+..+.+. +...+.++|-+|-+.+.|+...++. .++.+..+.+++..++
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~ 109 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLI 109 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHH
Confidence 4577888888899999999999999888888776 6678899999999988888776432 1223444445544432
Q ss_pred -----CCCCCCEEEEccchhhh
Q 048309 133 -----KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~ 149 (288)
.+.++|.|++...+..+
T Consensus 110 ~~~gl~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 110 ADTGLLDVGVDGILMDLGCSSM 131 (303)
T ss_pred HHhCCCcCCcceEEeecCcccc
Confidence 46789999987766655
No 445
>PRK10458 DNA cytosine methylase; Provisional
Probab=83.54 E-value=8.4 Score=36.52 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHcC---CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 49 DLKVAQMRKHSLLIEKAR---VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
.+..+....+..++.... .....+++|+-||.|++..-+-......|.++|+++.+.+.-+.++... +....+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~ 140 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFN 140 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---Cccceec
Confidence 444444444444443322 1224589999999999998886653345778999998777666654211 1234455
Q ss_pred cccCCCCC------------------CCCCCEEEEccchhhh
Q 048309 126 CDYRQLPK------------------AKKYDRIISCEMMEAV 149 (288)
Q Consensus 126 ~d~~~~~~------------------~~~fD~I~~~~~l~~~ 149 (288)
+|+.++.. ...+|+++....+.-+
T Consensus 141 ~DI~~i~~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 141 EDIRDITLSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred cChhhCccccccccchhhhhhhhhccCCCCCEEEEcCCCCcc
Confidence 66665431 1257988876655443
No 446
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.53 E-value=6.7 Score=38.11 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=50.7
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHc-----CC--CCceEEEEcccCCCC-
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEA-----GL--QDHIRLYLCDYRQLP- 132 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~-----g~--~~~v~~~~~d~~~~~- 132 (288)
..+.+.+.+||-.|+. |.++..++++ .|.+|++++-+++..+...+.+... |. ..++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 4455678888877753 4444444332 4789999998887665444333221 11 135889999998754
Q ss_pred ---CCCCCCEEEEccc
Q 048309 133 ---KAKKYDRIISCEM 145 (288)
Q Consensus 133 ---~~~~fD~I~~~~~ 145 (288)
.-+..|+|+++..
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 2357899887643
No 447
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.50 E-value=14 Score=31.54 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=48.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C----------C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K----------A 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~----------~ 134 (288)
+++++|=.|+ +|.++..+++. .+++|++++.+++..+...+.+...+ .++.++..|+.+.. . -
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888885 44444443332 47899999998877666555554433 36788889987643 1 1
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+|+....
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 47899987543
No 448
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=83.45 E-value=8.3 Score=32.86 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=50.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++++|=.|+ +|..+..++++ .+++|+.++-++...+.....+...+ .++.++.+|+.+.. ..
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678888884 45555555443 47899999998877766665555443 36788999998743 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+|+.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 46899988754
No 449
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.41 E-value=4.7 Score=34.94 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHh
Q 048309 84 AIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162 (288)
Q Consensus 84 ~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~ 162 (288)
+..|.+. +..+|+|+|.++..++.+.+. |+. .-...+...+ ..+|+|+..-.+.. ...+++++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~---~~~~~~~~~~---~~~DlvvlavP~~~-----~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GII---DEASTDIEAV---EDADLVVLAVPVSA-----IEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSS---SEEESHHHHG---GCCSEEEE-S-HHH-----HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCe---eeccCCHhHh---cCCCEEEEcCCHHH-----HHHHHHHhh
Confidence 4455555 458999999999988777543 442 2222221111 45799998655544 477777787
Q ss_pred cccccCcEE
Q 048309 163 SLLAKDGLL 171 (288)
Q Consensus 163 ~~LkpgG~l 171 (288)
..+++|+.+
T Consensus 67 ~~~~~~~iv 75 (258)
T PF02153_consen 67 PYLKPGAIV 75 (258)
T ss_dssp CGS-TTSEE
T ss_pred hhcCCCcEE
Confidence 877777643
No 450
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.39 E-value=8.5 Score=38.62 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=65.2
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|+ | .++..++. .|..|+.+|.+++.++.+++++... | ++ .++++. .|. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY---A 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---H
Confidence 4688899997 3 44555555 4899999999999998877655421 1 10 122222 122 1
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.-...|+|+=. +.+.+ +...++++++-++++|+..|.-++.+
T Consensus 389 ~~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 GFDNVDIVVEA-VVENP--KVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred HhcCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12568888743 55666 66788999999999999877665444
No 451
>PLN02702 L-idonate 5-dehydrogenase
Probab=83.13 E-value=20 Score=32.34 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEE--EcccCC----C--C
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLY--LCDYRQ----L--P 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~--~~d~~~----~--~ 132 (288)
......++.+||-+|+|. |..+..+++..+. .++++|.++...+.+++ .|.+..+.+. ..+... + .
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA 250 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh
Confidence 445667888999888764 7777888877555 58899988777665544 2332111110 011111 1 1
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-... + ...+....+.|+++|+++...
T Consensus 251 ~~~~~d~vid~~g--~------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 251 MGGGIDVSFDCVG--F------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred cCCCCCEEEECCC--C------HHHHHHHHHHHhcCCEEEEEc
Confidence 1346898886411 0 234666778999999987643
No 452
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.12 E-value=2 Score=34.91 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+++|.=+|+|. |.-....++..+.+|+++|.+...... ....+ + ...++.++- ...|+|+....+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~----~~~~~----~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG----ADEFG----V--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH----HHHTT----E--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh----ccccc----c--eeeehhhhc--chhhhhhhhhccc
Confidence 588999999986 776666666689999999998876541 11111 2 222333332 4688888865542
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. +...-+=++....+|+|.+|+-
T Consensus 103 ~---~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 103 P---ETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp T---TTTTSBSHHHHHTSTTTEEEEE
T ss_pred c---ccceeeeeeeeeccccceEEEe
Confidence 1 1111122233478888887764
No 453
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=83.06 E-value=2.8 Score=36.40 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=61.1
Q ss_pred HcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++.+||=.|+ | .|..+..+++..+..+++++.+++..+.+++ .|.. .++..+-.. ....
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITGG 203 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcCC
Confidence 345668889998984 3 5778888888778899999988887766643 2331 222221111 1123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++.... ...+..+.+.|+++|.++...
T Consensus 204 ~~~d~vl~~~~---------~~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 204 RGVDVVYDGVG---------KDTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCeeEEEECCC---------cHhHHHHHHhhccCcEEEEEe
Confidence 46899886422 123445668899999988643
No 454
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.84 E-value=15 Score=31.94 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=60.1
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 64 KARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
.+...++.+|+=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.+ ..+. +..++. ++.+|+++
T Consensus 127 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~~-~~~~d~vl 197 (305)
T cd08270 127 RGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVVV-GGSELS-GAPVDLVV 197 (305)
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEe-cccccc-CCCceEEE
Confidence 344445889998887 35777888887778899999988877766654 2332 1111 111222 24689888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..-. ...+....+.|+++|+++...
T Consensus 198 ~~~g---------~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 198 DSVG---------GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ECCC---------cHHHHHHHHHhcCCCEEEEEe
Confidence 6421 123566678999999988653
No 455
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.68 E-value=11 Score=33.38 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=53.9
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC----CceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ----DHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
.+|+=+|+|. |. ++..|++ .+..|+.++-+++.++..++ +.|+. ................+.+|+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4788999996 44 5666665 47899999987655544432 12220 00011111111111235799887653
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
=-+ +..+.++.+...+.++..++..
T Consensus 79 K~~-----~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 79 KAY-----DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CHH-----hHHHHHHHHHhhCCCCCEEEEE
Confidence 222 2356777888888888866553
No 456
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.68 E-value=12 Score=37.64 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=65.5
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|+ | .++..++...|..|+.+|.+++.++.+..+++.. + +. .++++. .|. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~---~ 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY---R 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh---H
Confidence 5788999998 4 3445555235899999999999988876655321 1 10 123333 122 2
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.-...|+|+=. +.+.+ +-..++++++-+.++|+..|.-++.+
T Consensus 386 ~~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 386 GFKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred HhccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12468887743 45555 66788999999999999877765544
No 457
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=82.67 E-value=6.1 Score=36.03 Aligned_cols=107 Identities=21% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----CCCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----RQLPKAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----~~~~~~~~ 136 (288)
......++.+||-.|+|. |..+..+++..+. .++++|.+++..+.+++. |. .-+.....+. ..+ ....
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~i~~~-~~~~ 243 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA-IPIDFSDGDPVEQILGL-EPGG 243 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC-eEeccCcccHHHHHHHh-hCCC
Confidence 455667888888888874 7778888877665 798999988777666542 31 0010001111 011 1246
Q ss_pred CCEEEEccchhh---hCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEA---VGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++-...-.. .........+.++.+.|+++|.++...
T Consensus 244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 898886432110 000122345777889999999987643
No 458
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=82.22 E-value=7.2 Score=34.18 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
....+++.. ...++..|||.=+|+|........ .+..++|+|+++..++.+.+++...
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 455566666 556889999999999999887665 4789999999999999999998753
No 459
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=82.03 E-value=5.5 Score=34.55 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=67.7
Q ss_pred HHHcCCCCCCEEEEE--CCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----CCCCC
Q 048309 62 IEKARVSKEHEVLEI--GCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LPKAK 135 (288)
Q Consensus 62 ~~~~~~~~~~~vLDi--GcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~~~~ 135 (288)
.+....++|.+||-- ..|.|.+..++++..+.++++.-.+.+-.++|+++ |...-|.+...|+.+ +....
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCC
Confidence 345578899888743 35678888898887788888888888777777665 443335555555543 23456
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..|+++-.-. ..-++.-...|||+|.++-.
T Consensus 215 GVd~vyDsvG---------~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 215 GVDAVYDSVG---------KDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred Cceeeecccc---------chhhHHHHHHhccCceEEEe
Confidence 7888875422 22334455899999998864
No 460
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=81.98 E-value=30 Score=30.01 Aligned_cols=97 Identities=23% Similarity=0.285 Sum_probs=54.7
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCCCCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLPKAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~~~~fD~I~~~ 143 (288)
..++.+|+-.|+ +.|..+..+++..+.++++++.+ ...+.++ ..|...-+.....+. ........+|+++..
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 215 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFDA 215 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEEC
Confidence 668899999997 35788888888778899998843 4444442 234310011111111 112244569999864
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..- ........+. .|+++|+++...
T Consensus 216 ~~~------~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 216 VGN------SPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred CCc------hHHHHHHhhh-ccCCCCEEEEec
Confidence 221 1112222222 399999998753
No 461
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.86 E-value=30 Score=30.40 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------HcCCC---------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------EAGLQ---------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------~~g~~---------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|. | .++..++. .+.+|+++|.+++.++.+++.++ +.|.- .++. ...+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE--- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH---
Confidence 4677899985 4 44555555 47899999999999876655432 12210 0111 112221
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-...|+|+..- .+- ++....+++++...++|+..++.
T Consensus 80 ~~~~aD~Vieav-~e~--~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 80 ELRDADFIIEAI-VES--EDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred HhCCCCEEEEcC-ccC--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 124678888642 121 24567788888888888876654
No 462
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.58 E-value=13 Score=37.46 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=64.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|+ | ..+..++. .|..|+.+|.+++.++.+..+++. .| ++ .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 4788999998 4 34455555 489999999999999877665432 11 10 123322 22222
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+=. +.+.+ +...++++++-..++|+..|.-.+.+
T Consensus 390 -~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 -FERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred -hcCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2567877743 45555 66788999999999988777665444
No 463
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=81.55 E-value=19 Score=31.89 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CC----CC-CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQ----LP-KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~----~~-~~ 134 (288)
......++.+||=.|+|. |..+..+++. .+.++++++.+++..+.+++ .|.. .++...- .+ +. ..
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~v~~~~ 228 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE----VGAD---LTINSKRVEDVAKIIQEKT 228 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH----cCCc---EEecccccccHHHHHHHhc
Confidence 445677889999899764 7788888886 48899999999988877743 2331 1222111 11 11 11
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+|.++... .+ ...+..+.+.|+++|.++...
T Consensus 229 ~~~d~vi~~~----~~----~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 229 GGAHAAVVTA----VA----KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred CCCcEEEEeC----CC----HHHHHHHHHhccCCCEEEEEe
Confidence 2577444221 11 234667778999999988743
No 464
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.51 E-value=4.5 Score=36.06 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC----CCCCCC
Q 048309 65 ARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR----QLPKAK 135 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~----~~~~~~ 135 (288)
+...++.+||=.|+| .|..+..+++..+.+++.++.+++..+.+++ .|.. .++.. +.. ......
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcCC
Confidence 467788899988875 6888888888878899999988876665532 2321 12211 111 111245
Q ss_pred CCCEEEE-ccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIIS-CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~-~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++. ... ...+..+.+.|+++|+++...
T Consensus 234 ~vd~vl~~~~~---------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 234 GAHAVVVTAVS---------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCEEEEcCCc---------hHHHHHHHHHhhcCCEEEEec
Confidence 6999985 321 223455668889999998753
No 465
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=81.44 E-value=7.7 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
.+++||-.| |+|..+..+++. .+++|+++..++.............+...+++++.+|+.+.. .-...|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 467888777 455555555443 477888776555433322222222222246889999998754 123589888
Q ss_pred Eccc
Q 048309 142 SCEM 145 (288)
Q Consensus 142 ~~~~ 145 (288)
....
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7654
No 466
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=81.34 E-value=28 Score=30.65 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--CCCC
Q 048309 65 ARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P--KAKK 136 (288)
Q Consensus 65 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~--~~~~ 136 (288)
....++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++.+ |.. .++..+-.+. . ..+.
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccCC
Confidence 34567889998883 3588888888887889999998887776665422 321 2221111111 1 1256
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+++.... ...+....+.|+++|+++..
T Consensus 215 ~d~vi~~~g---------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYFDNVG---------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEEEcch---------HHHHHHHHHhcCCCceEEEE
Confidence 898885321 12566667889999998764
No 467
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.12 E-value=13 Score=31.47 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=47.0
Q ss_pred CEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
+++|-.|++. .++..+++. .+++|++++-++...+.........+. ++.++.+|+.+.. .....|+++.
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 4688777643 333333332 478999998887766655555554443 5888999987753 2347999988
Q ss_pred ccc
Q 048309 143 CEM 145 (288)
Q Consensus 143 ~~~ 145 (288)
+..
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 643
No 468
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=80.90 E-value=15 Score=28.51 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=51.7
Q ss_pred EEEECCcc-cHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc----------cCCCC-CCCCCCE
Q 048309 73 VLEIGCGW-GTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD----------YRQLP-KAKKYDR 139 (288)
Q Consensus 73 vLDiGcG~-G~~-~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d----------~~~~~-~~~~fD~ 139 (288)
|+=+|+|. |.+ +..|++ .+.+|+.++-.+ ..+..+ +.| +++...+ ..... ....+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIK----EQG----LTITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHH----HHC----EEEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhh----hee----EEEEecccceecccccccCcchhccCCCcE
Confidence 45578885 554 344444 688999999766 444422 223 2222222 11111 3468999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+..-=- .+..+.++.+...+.++..+++.
T Consensus 71 viv~vKa-----~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 71 VIVAVKA-----YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EEE-SSG-----GGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEEEecc-----cchHHHHHHHhhccCCCcEEEEE
Confidence 9875322 34577888899999999777763
No 469
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=80.68 E-value=11 Score=36.08 Aligned_cols=105 Identities=11% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC---CCCCCCE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP---KAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~---~~~~fD~ 139 (288)
++..+.|..||+|.+.....+. ....++|.+..+.+...++.+..-.+... ......+|...-+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5578999999999988765432 12469999999999999998865555421 2333344443322 2356898
Q ss_pred EEEccchhh--------------------h-CH--hhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEA--------------------V-GH--EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~--------------------~-~~--~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|+++..+.- + ++ ..-..++..+...|++||+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 887653321 0 00 1123466777788888887544
No 470
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.60 E-value=4.2 Score=37.13 Aligned_cols=85 Identities=8% Similarity=0.005 Sum_probs=65.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC---C
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA---K 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~ 135 (288)
...-++..+|.+|+|+.|-.|.-+.+++.- ...++.+.|.++...+..++.+...|. +.++...+|+...+.+ .
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~~~ 283 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEKFR 283 (413)
T ss_pred hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCCCCccccc
Confidence 344556778899999999999999988875 356899999999999999999998888 4778888998875412 2
Q ss_pred CCCEEEEccch
Q 048309 136 KYDRIISCEMM 146 (288)
Q Consensus 136 ~fD~I~~~~~l 146 (288)
....|++..++
T Consensus 284 ~v~~iL~Dpsc 294 (413)
T KOG2360|consen 284 DVTYILVDPSC 294 (413)
T ss_pred ceeEEEeCCCC
Confidence 34455554444
No 471
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=80.54 E-value=8 Score=34.07 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cc-----cCCCCCCCCCCEE
Q 048309 69 KEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CD-----YRQLPKAKKYDRI 140 (288)
Q Consensus 69 ~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d-----~~~~~~~~~fD~I 140 (288)
.+.+||=.|+ | .|..+..+|+..+.++++++.+++..+.+++ .|.. .++. .+ +..+ ....+|+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~-~~~~~d~v 217 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGAK---EVIPREELQEESIKPL-EKQRWAGA 217 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCCC---EEEcchhHHHHHHHhh-ccCCcCEE
Confidence 3668988886 3 4778888888778899999988887666643 2331 1111 11 1111 23468888
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.... ...+....+.|+++|+++...
T Consensus 218 ld~~g---------~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 218 VDPVG---------GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred EECCc---------HHHHHHHHHHhhcCCEEEEEe
Confidence 75321 123556678899999998754
No 472
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=80.07 E-value=25 Score=31.28 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC----------C
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR----------Q 130 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~----------~ 130 (288)
......++.+||=.|+|. |..+..+++..+.+ +++++.+++..+.+++. |. ..++..+-. .
T Consensus 155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~i~~~~~~~~~~~~~~~~ 227 (341)
T cd08262 155 RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GA---DIVVDPAADSPFAAWAAELA 227 (341)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEEcCCCcCHHHHHHHHHH
Confidence 445667888998888764 66777777775654 88888888777766542 32 122221111 1
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+.+|+++-... . ...+..+.+.++++|+++...
T Consensus 228 ~~~~~~~d~vid~~g-----~---~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 228 RAGGPKPAVIFECVG-----A---PGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred HhCCCCCCEEEECCC-----C---HHHHHHHHHHhccCCEEEEEC
Confidence 113356998885321 0 124555667889999988643
No 473
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.98 E-value=8 Score=34.09 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CC-------CCCCC
Q 048309 65 ARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQ-------LPKAK 135 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~-------~~~~~ 135 (288)
....++.+|+=.|+| .|..+..+++..+.+++.++.+++..+.+++. +.. .++..+- .+ .....
T Consensus 156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
T cd08276 156 GPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL----GAD---HVINYRTTPDWGEEVLKLTGGR 228 (336)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEcCCcccCHHHHHHHHcCCC
Confidence 456678888777765 46666777777788999999988877766542 321 1221111 11 11335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... ...+..+.+.|+++|+++...
T Consensus 229 ~~d~~i~~~~---------~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 229 GVDHVVEVGG---------PGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred CCcEEEECCC---------hHHHHHHHHhhcCCCEEEEEc
Confidence 7999986421 123556678899999988643
No 474
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.98 E-value=26 Score=32.79 Aligned_cols=89 Identities=11% Similarity=0.108 Sum_probs=54.1
Q ss_pred EEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 72 EVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
+|+=+||| ..+..+++. .+..|+++|.+++.++.+++. . .+.++.+|..+.. .-..+|.+++.
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 56777775 444444442 578999999999887665542 1 3688889887643 23578888875
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..- ......+....+.+.|.-.+++.
T Consensus 73 ~~~-----~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 73 TDS-----DETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred cCC-----hHHHHHHHHHHHHhcCCCeEEEE
Confidence 321 22233344444555455555553
No 475
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.89 E-value=22 Score=31.51 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=53.7
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-CC--C--------CceEEEEcccCCCCCCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-GL--Q--------DHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-g~--~--------~~v~~~~~d~~~~~~~~~f 137 (288)
.+|.=||+|. | .++..+++ .+.+|+++|.+++.++.+++..+.. +. + .++++ ..|..+ .-...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--~~~~a 80 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR-KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAA--AVSGA 80 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHH--HhccC
Confidence 4688899996 3 34555555 4789999999999988777643211 10 0 01111 112211 12467
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
|+|+..-. ... .....++.++...++++..++
T Consensus 81 DlVi~av~-~~~--~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 81 DLVIEAVP-EKL--ELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CEEEEecc-CcH--HHHHHHHHHHHHhCCCCcEEE
Confidence 98886522 111 235667777777666655443
No 476
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=79.73 E-value=11 Score=33.11 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=56.5
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcC--CHHHHHHHHHHHHHcCCCCceEEEEcccCC----CCCC
Q 048309 62 IEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITL--SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LPKA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~--s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~~~ 134 (288)
.......++.+||-.|+| .|..+..+++..+.+|+.+.. +++..+.+++ .|.. .+.....|... ....
T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~l~~~~~~ 231 (306)
T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE----LGAD-AVNGGEEDLAELVNEITDG 231 (306)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH----hCCc-ccCCCcCCHHHHHHHHcCC
Confidence 344456678888776765 367777778777778877633 3333333332 2331 11111111111 1123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+|+++.... ....+....+.|+++|.++....
T Consensus 232 ~~vd~vld~~g--------~~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 232 DGADVVIECSG--------AVPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CCCCEEEECCC--------ChHHHHHHHHHhhcCCEEEEEcc
Confidence 56899886421 02355666788999999987544
No 477
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=79.62 E-value=5.9 Score=36.29 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=36.7
Q ss_pred cCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 65 ARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 65 ~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
....++.+||=.|+ | .|..+..+++..+.++++++.+++..+.+++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35667889999996 3 4778888888878888999998888877765
No 478
>PRK06139 short chain dehydrogenase; Provisional
Probab=79.56 E-value=19 Score=32.33 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=50.2
Q ss_pred CCCEEEEECCccc--H-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWG--T-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G--~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.| . ++..+++ .+++|+.++-+++.++...+.++..+ .++.++..|+.+.. ..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~-~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFAR-RGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4568887886443 2 2333444 48899999999888877766666555 35778888887632 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 57899988754
No 479
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=79.37 E-value=3.6 Score=36.24 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCC
Q 048309 63 EKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~ 133 (288)
......++.+||=.|+ | .|..+..+++..+++++.+.-+++..+.+++ .|.. .++..+-.+ ...
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 205 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAG 205 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhC
Confidence 3456778899998875 3 5888888888878888888767766555543 2431 222221111 113
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+.... . ..+.++.+.|+++|+++..
T Consensus 206 ~~~~d~v~d~~g-------~--~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 206 GAPISVALDSVG-------G--KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred CCCCcEEEECCC-------C--hhHHHHHHhhcCCcEEEEE
Confidence 346999985321 1 1335667899999998864
No 480
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.12 E-value=11 Score=34.01 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+.+|.=||+|. |......+...+.+|++.|.++..... .++ ...+..+ .-...|+|+......
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~------------~~~-~~~~l~e--ll~~aDiVil~lP~t 209 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD------------FLT-YKDSVKE--AIKDADIISLHVPAN 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh------------hhh-ccCCHHH--HHhcCCEEEEeCCCc
Confidence 567899999997 654444444468899999988753210 011 1112222 225789888764433
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. +....+.++....+++|.+++-
T Consensus 210 ~---~t~~li~~~~l~~mk~gavlIN 232 (330)
T PRK12480 210 K---ESYHLFDKAMFDHVKKGAILVN 232 (330)
T ss_pred H---HHHHHHhHHHHhcCCCCcEEEE
Confidence 2 2234456777888998886665
No 481
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=78.99 E-value=21 Score=31.83 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=41.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
.++.+|+-+|+|. |......+.. ...+|+.++.+++..+...+. .|. .... ..++. .-..+|+|++.-
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~---~g~----~~~~--~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE---LGG----NAVP--LDELLELLNEADVVISAT 246 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---cCC----eEEe--HHHHHHHHhcCCEEEECC
Confidence 4688999999985 6654444443 346899999988654322222 221 2222 11222 124689999875
Q ss_pred chhh
Q 048309 145 MMEA 148 (288)
Q Consensus 145 ~l~~ 148 (288)
.-.+
T Consensus 247 ~~~~ 250 (311)
T cd05213 247 GAPH 250 (311)
T ss_pred CCCc
Confidence 5443
No 482
>PRK07985 oxidoreductase; Provisional
Probab=78.88 E-value=43 Score=29.31 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCEEEEECCccc--H-HHHHHHHccCCEEEEEcCC--HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 69 KEHEVLEIGCGWG--T-FAIEVVRQTGCNYTGITLS--AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G--~-~~~~la~~~~~~v~giD~s--~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
.++++|-.|++.| . .+..+++ .|++|+.++.+ ....+...+..+..+ .++.++..|+.+..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~-~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAR-EGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4568998886433 2 3344444 47889887654 233444444444443 35778889987632
Q ss_pred CCCCCCEEEEccch-------hhhCHhhHH-----------HHHHHHhcccccCcEEEEE
Q 048309 133 KAKKYDRIISCEMM-------EAVGHEYME-----------EYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ~~~~fD~I~~~~~l-------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 174 (288)
.-+..|+++.+... ...+.++.. .+++.+...++.+|.+++.
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 12567988876432 122222222 2445555666778877663
No 483
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.79 E-value=16 Score=30.55 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|+ +|.++..+++. .+.+|++++.++...+...+..+..+ .++.++.+|+.+.. .-
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 45444444433 47899999998876665555554433 46888999997743 01
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
++.|+++.+..
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 46899987654
No 484
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=78.73 E-value=4.7 Score=35.44 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=62.2
Q ss_pred HHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CC
Q 048309 62 IEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LP 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~ 132 (288)
.......++.+||=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.. .++...-.+ ..
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 207 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREAL 207 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHc
Confidence 34455678889988884 45888888888878899999988887766643 3331 122211111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+++.... . .....+.+.|+++|+++...
T Consensus 208 ~~~~~d~vl~~~g-------~--~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 208 GGGGVTVVLDGVG-------G--AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred CCCCceEEEECCC-------h--HhHHHHHHHhccCcEEEEEe
Confidence 2346999986422 1 12356678899999988643
No 485
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=78.59 E-value=19 Score=30.28 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=47.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------------
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------------ 132 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------------ 132 (288)
.+++++|=.|+ +|.++..+++. .+++|++++-++...+...+.+...+. .++.++..|+....
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence 36778988885 44444444333 478999999988776655555544432 35677777775321
Q ss_pred -CCCCCCEEEEccc
Q 048309 133 -KAKKYDRIISCEM 145 (288)
Q Consensus 133 -~~~~fD~I~~~~~ 145 (288)
..+..|.++.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1246898887643
No 486
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=78.42 E-value=4.9 Score=35.33 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---c----CCCCCCCC
Q 048309 66 RVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---Y----RQLPKAKK 136 (288)
Q Consensus 66 ~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~----~~~~~~~~ 136 (288)
...++.+||=.|++ .|..+..+++..+.+++++..+++..+.+++ .|.. .++... . ........
T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~ 207 (323)
T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGAD---EVIDSSPEDLAQRVKEATGGAG 207 (323)
T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCC---EEecccchhHHHHHHHHhcCCC
Confidence 45678899988863 5888888888878899988888876665532 2331 111111 1 11113356
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|+....- . ......+.|+++|+++..
T Consensus 208 ~d~vl~~~g~-----~----~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 208 ARLALDAVGG-----E----SATRLARSLRPGGTLVNY 236 (323)
T ss_pred ceEEEECCCC-----H----HHHHHHHhhCCCCEEEEE
Confidence 9999864321 1 123445789999998853
No 487
>PRK08324 short chain dehydrogenase; Validated
Probab=78.40 E-value=18 Score=36.09 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCCEEEEECCcc--cHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGW--GTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~--G~~-~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++++|-.|++. |.. +..+++ .+.+|+++|.++...+.+.+.+... .++.++..|+.+.. ..
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~-~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAA-EGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHH-CcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 567899888533 333 233333 4789999999988776665544332 36888899987632 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+.+|+|+.+..
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 47899988754
No 488
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.36 E-value=43 Score=31.23 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=54.7
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHH------------H---HHcCCCCceEEEEcccCCCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMK------------V---NEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~------------~---~~~g~~~~v~~~~~d~~~~~~ 133 (288)
.+|.=||.|. |. ++..|++. |.+|+++|.+++.++..+.. + ...| +.... . .
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g---~l~~~-~------~ 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG---YLRAT-T------T 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC---ceeee-c------c
Confidence 4677889886 33 34445554 78999999999987753210 0 0011 11111 0 1
Q ss_pred CCCCCEEEEccchh-------hhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 134 AKKYDRIISCEMME-------AVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 ~~~fD~I~~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
....|+|+.+-.-. .+ ......++.+...|++|..++..+-..+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl--~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDL--TYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcCh--HHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 13578887643321 11 3456677888888988777666544333
No 489
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.20 E-value=33 Score=29.30 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=44.4
Q ss_pred CCCEEEEECCccc--H-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWG--T-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G--~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.| . .+..+++ .+++|+.++.+++..+...+.. + .++.++.+|+.+.. .-
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVA-AGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 3568887885443 2 2333444 4789999998876544333222 2 35788999997743 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 46899887654
No 490
>PRK06701 short chain dehydrogenase; Provisional
Probab=77.96 E-value=40 Score=29.48 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=44.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHH-HHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAE-QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~-~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
+++++|-.|++.|. ++..+++ .+++|+.++.++. ..+.....++..+ .++.++..|+.+.. .
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~-~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAK-EGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46688888864432 3334444 4789998887642 2333333344333 36788999987633 1
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
-+..|+++.+..
T Consensus 122 ~~~iD~lI~~Ag 133 (290)
T PRK06701 122 LGRLDILVNNAA 133 (290)
T ss_pred cCCCCEEEECCc
Confidence 146898886543
No 491
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.83 E-value=10 Score=33.01 Aligned_cols=96 Identities=21% Similarity=0.167 Sum_probs=58.9
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCC
Q 048309 64 KARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~ 134 (288)
.....++.+|+-.|+ +.|..+..+++..+.+++.++.++...+.+++ .+.. .++..+.... ...
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 211 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA----LGAA---HVIVTDEEDLVAEVLRITGG 211 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHhCC
Confidence 345567788998886 34667777776678899999988877665532 2321 2222221111 123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++....- .....+.+.++++|+++...
T Consensus 212 ~~~d~vi~~~~~---------~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 212 KGVDVVFDPVGG---------PQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred CCceEEEECCch---------HhHHHHHHhhccCCEEEEEE
Confidence 468988864221 23445567889999988653
No 492
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=77.60 E-value=9.8 Score=32.33 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=59.5
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC----CCCC
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR----QLPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~----~~~~ 133 (288)
+.....++.+|+=.|+ +.|..+..+++..+.++++++.++...+.++.... .. ..++.. +.. ....
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ 176 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGG--PV---DHIFSSRDLSFADGILRATG 176 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCC--Cc---ceEeecCchhHHHHHHHHhC
Confidence 3345678889988863 35777788888778899999888877666654310 01 011111 110 1112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+++.. .+ . ..+..+.+.|+++|.++...
T Consensus 177 ~~~~d~vi~~-----~~--~--~~~~~~~~~l~~~g~~v~~g 209 (293)
T cd05195 177 GRGVDVVLNS-----LS--G--ELLRASWRCLAPFGRFVEIG 209 (293)
T ss_pred CCCceEEEeC-----CC--c--hHHHHHHHhcccCceEEEee
Confidence 3468888743 21 1 14556678899999988643
No 493
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=77.49 E-value=44 Score=29.49 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=56.2
Q ss_pred CCEEEEECC--cccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-c-ccCC-C--CCCCCCCEEE
Q 048309 70 EHEVLEIGC--GWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-C-DYRQ-L--PKAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGc--G~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~-d~~~-~--~~~~~fD~I~ 141 (288)
+.+||=.|+ +.|..+..+++.. +.+|++++.+++..+.+++ .|.. .++. . +... + ...+.+|+|+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~i~~~~~~~vd~vl 221 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----LGAH---HVIDHSKPLKAQLEKLGLEAVSYVF 221 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH----cCCC---EEEECCCCHHHHHHHhcCCCCCEEE
Confidence 789988874 4688888888875 8899999888877666643 2431 2222 1 1100 0 1234689888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.... -...+....+.|+++|+++..
T Consensus 222 ~~~~--------~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 222 SLTH--------TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EcCC--------cHHHHHHHHHHhccCCEEEEE
Confidence 5311 023455667888999998863
No 494
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=77.10 E-value=31 Score=26.75 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..+.+++-+|||. |. .+..+++.....++.+|.+++..+...+...... +.....|..+. .+.+|+|++.-.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~Dvvi~~~~ 90 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--LAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--cccCCEEEeCcC
Confidence 3567899999974 32 2333333223689999999876655444332211 11122222222 367999998654
Q ss_pred hh
Q 048309 146 ME 147 (288)
Q Consensus 146 l~ 147 (288)
..
T Consensus 91 ~~ 92 (155)
T cd01065 91 VG 92 (155)
T ss_pred CC
Confidence 43
No 495
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=77.10 E-value=15 Score=32.45 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=61.5
Q ss_pred HcCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 64 KARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
.+...++.+||=.|++ .|..+..+++..+.+++.++.+++..+.+++. ...-+. ..-...++..+ +.+|+++
T Consensus 157 ~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~v~~~---~~~d~~l 230 (334)
T PRK13771 157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIV--GSKFSEEVKKI---GGADIVI 230 (334)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcC--chhHHHHHHhc---CCCcEEE
Confidence 3466778899988883 58888888888788999999998888777554 211110 01000011111 2588888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.... ...+..+.+.|+++|.++....
T Consensus 231 d~~g---------~~~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 231 ETVG---------TPTLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred EcCC---------hHHHHHHHHHHhcCCEEEEEec
Confidence 6421 1134566788899999887543
No 496
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.08 E-value=6.7 Score=35.21 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=58.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~ 133 (288)
......++.+||=.|+|. |..+..+++..+. .++++|.+++..+.+.+ .|.. .++..+-.+ ...
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~ 240 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK----FGAD---VVLNPPEVDVVEKIKELTG 240 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHhC
Confidence 445667888887777654 7777788877554 57889988876654443 3431 122211111 112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+++.... . ...+..+.+.|+++|+++..
T Consensus 241 ~~~vdvvld~~g-------~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 241 GYGCDIYIEATG-------H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCCCCEEEECCC-------C-hHHHHHHHHHhhcCCEEEEE
Confidence 345898886421 0 12355667888999998874
No 497
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.07 E-value=48 Score=29.39 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=53.2
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------HcCCC---------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------EAGLQ---------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------~~g~~---------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|. | .++..++++ +.+|+++|.+++.++.++...+ ..|.. .++++ ..|..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 78 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLAD-- 78 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHH--
Confidence 3688899885 4 345555654 7899999999988877665432 22221 11222 222221
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-...|+|+..-. +.. +....+++++...+++ ..++.
T Consensus 79 a~~~ad~Vi~avp-e~~--~~k~~~~~~l~~~~~~-~~ii~ 115 (308)
T PRK06129 79 AVADADYVQESAP-ENL--ELKRALFAELDALAPP-HAILA 115 (308)
T ss_pred hhCCCCEEEECCc-CCH--HHHHHHHHHHHHhCCC-cceEE
Confidence 1246888876532 222 3345567776665544 44444
No 498
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=77.02 E-value=13 Score=32.85 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
.+++||=.|+ +|..+..++++ .+.+|++++.++.............+..++++++.+|+.+.. .-..+|+|+
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 3567886664 55555555443 477898887664432222221111122246899999998754 124689887
Q ss_pred Eccc
Q 048309 142 SCEM 145 (288)
Q Consensus 142 ~~~~ 145 (288)
....
T Consensus 82 h~A~ 85 (322)
T PLN02662 82 HTAS 85 (322)
T ss_pred EeCC
Confidence 6543
No 499
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=76.93 E-value=18 Score=30.60 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++++|-.|++. ..+..+++. .+++|+.++-+++.++...+.++..+ .++.++.+|+.+.. .-
T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 567888888543 334443332 48899999998877665555555444 35888999987632 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
++.|+++.+..
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 46788887654
No 500
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.82 E-value=19 Score=30.57 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=50.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.|. .+..+++ .+++|+.++.+++..+...+.+.......++.++..|+.+.. .-
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAR-EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788888875432 2334444 478999999988877766666654222246888999987643 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 47899887654
Done!