BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048310
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L6Y4|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana
GN=EMF2 PE=1 SV=2
Length = 631
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/101 (83%), Positives = 93/101 (92%)
Query: 2 KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
+SL+ +RQFFHSHRAQPMA EQV+SDRDSEDEVDDDVAD EDRRMLDDFVDVTKDEKQMM
Sbjct: 499 RSLLQKRQFFHSHRAQPMALEQVLSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMM 558
Query: 62 HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
HMWNSFVRKQRVLADGHIPWACEAF++L+G +V+ P L W
Sbjct: 559 HMWNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIW 599
>sp|Q8W5B1|VRN2_ARATH Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana
GN=VRN2 PE=1 SV=2
Length = 440
Score = 128 bits (322), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/99 (72%), Positives = 83/99 (83%)
Query: 4 LVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHM 63
L+ +RQF+HSHR QPMA EQV+SDRDSEDEVDDDVAD EDR+MLDDFVDV KDEKQ MH+
Sbjct: 263 LLQKRQFYHSHRVQPMALEQVMSDRDSEDEVDDDVADFEDRQMLDDFVDVNKDEKQFMHL 322
Query: 64 WNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
WNSFVRKQRV+ADGHI WACE F++ Y +L +L W
Sbjct: 323 WNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSSLFW 361
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3
Length = 755
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 69/95 (72%)
Query: 8 RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
RQF+HS QP+ +EQV+S+ DSE+E DD D+ +R L+ V V+K+EK+ M++WN F
Sbjct: 606 RQFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIF 665
Query: 68 VRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
VRKQRV+ADGH+PWACE F KL+ ++ + + W
Sbjct: 666 VRKQRVIADGHVPWACEEFAKLHKEEMKNSSSFDW 700
>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1
Length = 657
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 8 RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
R +FHS P+ +++ + DSEDE D D + +++F DV + EK++M +WN
Sbjct: 528 RLYFHSDSCTPLRPQEM--EVDSEDERDPDWLREKTAMQIEEFTDVNEGEKEIMKLWNLL 585
Query: 68 VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
V K +AD + AC +F + +G +V+
Sbjct: 586 VMKHGFIADNQMNQACMSFVEQHGTIMVE 614
>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1
Length = 700
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 7 QRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNS 66
R +FHS P+ +++ D DSEDE D + + +++F DV + EK++M MWN
Sbjct: 519 NRLYFHSDTCLPLRPQEM--DVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKMWNL 576
Query: 67 FVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
V K +AD + C F YG ++Q
Sbjct: 577 HVMKHGFIADNQMNHGCMLFVDNYGPQIIQ 606
>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2
Length = 741
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 8 RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
R +FHS P+ +++ + DSEDE D + + +++F DV + EK++M +WN
Sbjct: 565 RLYFHSDTCLPLRPQEM--EVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLH 622
Query: 68 VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
V K +AD + AC F + YG +++
Sbjct: 623 VMKHGFIADNQMNHACMLFVENYGQKIIK 651
>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3
Length = 739
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 8 RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
R +FHS P+ +++ + DSEDE D + + +++F DV + EK++M +WN
Sbjct: 563 RLYFHSDTCLPLRPQEM--EVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLH 620
Query: 68 VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
V K +AD + AC F + YG +++
Sbjct: 621 VMKHGFIADNQMNHACMLFVENYGQKIIK 649
>sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila melanogaster GN=Su(z)12 PE=1
SV=1
Length = 900
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 8 RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
R + H+ P+ +++ D DSE E D + +M+D+F DV + EK++M +WN
Sbjct: 527 RLYHHTETCLPVHPKEL--DIDSEGESDPLWLRQKTIQMIDEFSDVNEGEKELMKLWNLH 584
Query: 68 VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
V + + D +P ACE F G ++V+
Sbjct: 585 VMRHGFVGDCQLPIACEMFLDAKGTEIVR 613
>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN=suz12b PE=2 SV=1
Length = 682
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 8 RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
R +FHS P+ +++ + DSEDE D + + +++F DV + EK++M +WN
Sbjct: 523 RLYFHSDSCMPLRPQEM--EVDSEDERDPEWLQEKTTTQIEEFTDVNEGEKEVMKLWNLH 580
Query: 68 VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
V K +AD + A F ++ G +++
Sbjct: 581 VMKNGFIADNQMSQASMLFVEICGPHIIR 609
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 2 KSLVSQRQFFHSHRAQP--------------MAWEQVVS-DRDSEDEVDDDVADLEDRRM 46
+ LV + Q FH R QP M W+ ++ ++ +D+VD ++ E R
Sbjct: 243 EKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIK--EAREK 300
Query: 47 LDDFVDVTKDEKQMMHMWNSFVRKQRVL 74
L+ ++ + E Q+M M +R+Q L
Sbjct: 301 LEMEMEAARHEHQVMLMRQDLMRRQEEL 328
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 2 KSLVSQRQFFHSHRAQP--------------MAWEQVVS-DRDSEDEVDDDVADLEDRRM 46
+ LV + Q FH R QP M W+ ++ ++ +D+VD ++ E R
Sbjct: 238 EKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIK--EAREK 295
Query: 47 LDDFVDVTKDEKQMMHMWNSFVRKQRVL 74
L+ ++ + E Q+M M +R+Q L
Sbjct: 296 LEMEMEAARHEHQVMLMRQDLMRRQEEL 323
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 2 KSLVSQRQFFHSHRAQP--------------MAWEQVVS-DRDSEDEVDDDVADLEDRRM 46
+ LV + Q FH R QP M W+ ++ ++ +D+VD ++ E R
Sbjct: 240 EKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIK--EAREK 297
Query: 47 LDDFVDVTKDEKQMMHMWNSFVRKQRVL 74
L+ ++ + E Q+M M +R+Q L
Sbjct: 298 LEMEMEAARHEHQVMLMRQDLMRRQEEL 325
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 2 KSLVSQRQFFHSHRAQP--------------MAWEQVVS-DRDSEDEVDDDVADLEDRRM 46
+ LV + Q FH R QP M W+ ++ ++ +D+VD ++ E R
Sbjct: 238 EKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIK--EAREK 295
Query: 47 LDDFVDVTKDEKQMMHMWNSFVRKQRVL 74
L+ ++ + E Q+M M +R+Q L
Sbjct: 296 LEMEMEAARHEHQVMLMRQDLMRRQEEL 323
>sp|B9EC41|Y1095_MACCJ UPF0398 protein MCCL_1095 OS=Macrococcus caseolyticus (strain
JCSC5402) GN=MCCL_1095 PE=3 SV=1
Length = 183
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 14 HRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVD 52
H A P ++Q + D SE++ + DV LED L DFV+
Sbjct: 140 HEASPKFFKQTLIDFASENQYNIDVVTLED---LSDFVN 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,226,018
Number of Sequences: 539616
Number of extensions: 1459788
Number of successful extensions: 6077
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6050
Number of HSP's gapped (non-prelim): 38
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)