Query 048310
Match_columns 102
No_of_seqs 77 out of 101
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09733 VEFS-Box: VEFS-Box of 100.0 2.8E-52 6.1E-57 299.9 7.2 100 3-102 14-113 (140)
2 KOG2350 Zn-finger protein join 100.0 5E-47 1.1E-51 285.9 6.4 97 4-102 93-189 (221)
3 PF08616 SPA: Stabilization of 67.8 3.7 8E-05 28.2 1.7 35 58-92 13-49 (113)
4 KOG3341 RNA polymerase II tran 63.4 3.9 8.4E-05 32.3 1.2 23 79-101 41-63 (249)
5 PRK13710 plasmid maintenance p 42.9 20 0.00043 23.2 1.8 21 58-78 49-69 (72)
6 PF03489 SapB_2: Saposin-like 38.1 36 0.00077 18.1 2.1 16 81-96 2-17 (35)
7 PF08246 Inhibitor_I29: Cathep 36.8 17 0.00038 21.3 0.8 12 46-57 46-57 (58)
8 PF07455 Psu: Phage polarity s 30.3 32 0.0007 26.3 1.5 32 65-96 68-99 (188)
9 TIGR02909 spore_YkwD uncharact 30.0 1.7E+02 0.0038 19.5 5.4 47 53-100 1-47 (127)
10 PF13902 R3H-assoc: R3H-associ 27.7 45 0.00098 23.0 1.8 12 58-69 69-80 (131)
11 PF07879 PHB_acc_N: PHB/PHA ac 27.1 23 0.0005 22.7 0.2 20 4-23 5-24 (64)
12 PF04667 Endosulfine: cAMP-reg 26.3 23 0.00049 23.6 0.1 12 3-14 30-41 (86)
13 PF08916 Phe_ZIP: Phenylalanin 25.3 37 0.00081 21.3 0.9 27 64-90 3-29 (59)
14 COG5109 Uncharacterized conser 24.3 57 0.0012 27.3 2.0 22 48-69 56-77 (396)
15 PF14998 Ripply: Transcription 21.9 43 0.00093 22.6 0.7 10 26-35 78-87 (87)
16 KOG4616 Mitochondrial ribosoma 21.3 51 0.0011 23.6 1.1 20 47-66 110-129 (137)
17 TIGR01848 PHA_reg_PhaR polyhyd 21.2 36 0.00077 23.8 0.3 20 4-23 5-24 (107)
18 PF07362 CcdA: Post-segregatio 21.1 11 0.00025 24.1 -2.1 20 59-78 50-69 (72)
19 PF14881 Tubulin_3: Tubulin do 21.1 42 0.00092 24.8 0.6 15 7-21 16-30 (180)
20 smart00848 Inhibitor_I29 Cathe 20.5 31 0.00068 19.7 -0.1 12 46-57 46-57 (57)
No 1
>PF09733 VEFS-Box: VEFS-Box of polycomb protein; InterPro: IPR019135 The VEFS-Box is found in the the C-terminal region of the VRN2, EMF2, FIS2, and Su(z)12 polycomb proteins. This domain is characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain []. In some proteins the VEFS-Box is associated with a zinc-finger domain located roughly 100 residues towards the N terminus. These proteins are part of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [].
Probab=100.00 E-value=2.8e-52 Score=299.90 Aligned_cols=100 Identities=61% Similarity=1.007 Sum_probs=97.9
Q ss_pred ccccCcccccccCccccccccccCCCCCCCccChHHHHHHHHHHhhccCCCChHHHHHHHHhHHHHHhhccccCCchHHH
Q 048310 3 SLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWA 82 (102)
Q Consensus 3 ~~l~~R~ffhs~t~~pl~~~e~~~d~DSedE~D~~Wl~~k~r~~l~dF~Dv~~~EKefM~lWN~fv~r~r~~aD~~ip~a 82 (102)
.+||||+||||+||+||+|+|++||+|||||+|++||+++++++|+||+|||++||+||++||+||+|||++||+|||+|
T Consensus 14 ~~~~~R~y~Hs~t~~p~~~~e~~sd~DSedE~D~~wl~~~~r~~l~dF~Dv~~~EKefM~lWN~fv~k~r~~aD~~ip~a 93 (140)
T PF09733_consen 14 ILLHNRQYFHSRTCQPMRPEEVLSDRDSEDEVDDEWLDQKHRRMLDDFSDVNEEEKEFMKLWNSFVMKQRVIADGHIPWA 93 (140)
T ss_pred hhccCcceeccccceeccHHHhcCCCCCCCcCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHccCcchHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCC
Q 048310 83 CEAFTKLYGHDLVQAPALKW 102 (102)
Q Consensus 83 c~~Fv~~~~~~L~~~~~l~~ 102 (102)
|++||+.||+||+++|+|+|
T Consensus 94 c~~Fv~~~~~~L~~~~~l~~ 113 (140)
T PF09733_consen 94 CEAFVREHGQWLVEKPNLRR 113 (140)
T ss_pred HHHHHHHhHHHHhhChhHHH
Confidence 99999999999999999874
No 2
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=100.00 E-value=5e-47 Score=285.90 Aligned_cols=97 Identities=59% Similarity=1.050 Sum_probs=94.3
Q ss_pred cccCcccccccCccccccccccCCCCCCCccChHHHHHHHHHHhhccCCCChHHHHHHHHhHHHHHhhccccCCchHHHH
Q 048310 4 LVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWAC 83 (102)
Q Consensus 4 ~l~~R~ffhs~t~~pl~~~e~~~d~DSedE~D~~Wl~~k~r~~l~dF~Dv~~~EKefM~lWN~fv~r~r~~aD~~ip~ac 83 (102)
.|||||||||+|||||++++|++|+|||+|+ ++|++.++++||++|+|||++||+||++||+||+|||+|||+||||||
T Consensus 93 ~lhkRqffHS~t~qPl~leqvmsdrdsE~d~-dd~a~~e~~~mLe~fvdvne~ekr~mkLWNsfVrkqrviAD~hipwAC 171 (221)
T KOG2350|consen 93 RLHKRQFFHSDTCQPLRLEQVMSDRDSEKDE-DDWARLETSTMLEEFVDVNEGEKRVMKLWNSFVRKQRVIADGHIPWAC 171 (221)
T ss_pred ccccceeeeccccCCCCHHHHhccccccccc-hhhhhhHHHHHHHHhccccHHHHHHHHHHHHHHHHhheeccCCCcHHH
Confidence 4999999999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCC
Q 048310 84 EAFTKLYGHDLVQAPALKW 102 (102)
Q Consensus 84 ~~Fv~~~~~~L~~~~~l~~ 102 (102)
++|++.||++|+.++ |.|
T Consensus 172 eaFsrlhgq~m~~~~-l~~ 189 (221)
T KOG2350|consen 172 EAFSRLHGQKMIKKN-LCW 189 (221)
T ss_pred HHHHHHhHHHHHhch-hhH
Confidence 999999999999998 866
No 3
>PF08616 SPA: Stabilization of polarity axis
Probab=67.78 E-value=3.7 Score=28.24 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=29.4
Q ss_pred HHHHHHhHHHHHhhccccCCchHHH--HHHHHHHHHh
Q 048310 58 KQMMHMWNSFVRKQRVLADGHIPWA--CEAFTKLYGH 92 (102)
Q Consensus 58 KefM~lWN~fv~r~r~~aD~~ip~a--c~~Fv~~~~~ 92 (102)
-+.|.+||+.+.+.|++-=++=|.+ |..||..-..
T Consensus 13 ~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~ 49 (113)
T PF08616_consen 13 PEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCS 49 (113)
T ss_pred hHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999988888888 9988875433
No 4
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=63.42 E-value=3.9 Score=32.26 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCC
Q 048310 79 IPWACEAFTKLYGHDLVQAPALK 101 (102)
Q Consensus 79 ip~ac~~Fv~~~~~~L~~~~~l~ 101 (102)
+..+.+.|++.|.++|.+||.+|
T Consensus 41 f~~~LeeFA~kH~~ei~knsqFR 63 (249)
T KOG3341|consen 41 FQEALEEFARKHKTEIRKNSQFR 63 (249)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHH
Confidence 56788999999999999999876
No 5
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=42.92 E-value=20 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHhhccccCCc
Q 048310 58 KQMMHMWNSFVRKQRVLADGH 78 (102)
Q Consensus 58 KefM~lWN~fv~r~r~~aD~~ 78 (102)
++.|..+|.||-++|+.+|.+
T Consensus 49 ~eai~~~n~~ve~~G~~~de~ 69 (72)
T PRK13710 49 REGMAEVARFIEMNGSFADEN 69 (72)
T ss_pred HHHHHHHHHHHHHhCCcHHhc
Confidence 678889999999999988865
No 6
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=38.06 E-value=36 Score=18.06 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhc
Q 048310 81 WACEAFTKLYGHDLVQ 96 (102)
Q Consensus 81 ~ac~~Fv~~~~~~L~~ 96 (102)
..|..||..|+..|+.
T Consensus 2 ~~C~~~V~~y~~~ii~ 17 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQ 17 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4699999999988764
No 7
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=36.84 E-value=17 Score=21.33 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=9.9
Q ss_pred HhhccCCCChHH
Q 048310 46 MLDDFVDVTKDE 57 (102)
Q Consensus 46 ~l~dF~Dv~~~E 57 (102)
-|+.|+|++++|
T Consensus 46 ~~N~fsD~t~eE 57 (58)
T PF08246_consen 46 GLNQFSDMTPEE 57 (58)
T ss_dssp -SSTTTTSSHHH
T ss_pred eCccccCcChhh
Confidence 478999999987
No 8
>PF07455 Psu: Phage polarity suppression protein (Psu); InterPro: IPR010006 This entry is represented by Bacteriophage P4, Psu, the polarity suppression protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of phage polarity suppression proteins (Psu) (approximately 190 residues long). The Psu protein of Bacteriophage P4 causes suppression of transcriptional polarity in Escherichia coli by overcoming Rho termination factor activity [].
Probab=30.31 E-value=32 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHhhccccCCchHHHHHHHHHHHHhhhhc
Q 048310 65 NSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96 (102)
Q Consensus 65 N~fv~r~r~~aD~~ip~ac~~Fv~~~~~~L~~ 96 (102)
+.+|..|..+-...+-+.+..|.+.||..|.+
T Consensus 68 g~yI~aH~~v~~i~~~~~l~dFMq~hG~aL~~ 99 (188)
T PF07455_consen 68 GRYIRAHEEVQEISARQRLNDFMQQHGAALIA 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677777777888999999999999999875
No 9
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=29.99 E-value=1.7e+02 Score=19.53 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=33.4
Q ss_pred CChHHHHHHHHhHHHHHhhccccCCchHHHHHHHHHHHHhhhhcCCCC
Q 048310 53 VTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPAL 100 (102)
Q Consensus 53 v~~~EKefM~lWN~fv~r~r~~aD~~ip~ac~~Fv~~~~~~L~~~~~l 100 (102)
++..|++++.+-|.+-.++++-+= .....+..-++.|+..++.+..+
T Consensus 1 ~~~~e~~~l~~iN~~R~~~Gl~pL-~~~~~L~~~A~~hA~~ma~~~~~ 47 (127)
T TIGR02909 1 LTAEEKRVVELVNAERAKNGLKPL-KADPELSKVARLKSEDMRDKNYF 47 (127)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCC-ccCHHHHHHHHHHHHHHHhCCcc
Confidence 467899999999999888765332 23344567777888888876544
No 10
>PF13902 R3H-assoc: R3H-associated N-terminal domain
Probab=27.73 E-value=45 Score=23.05 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=7.7
Q ss_pred HHHHHHhHHHHH
Q 048310 58 KQMMHMWNSFVR 69 (102)
Q Consensus 58 KefM~lWN~fv~ 69 (102)
.++|..||.|+-
T Consensus 69 ~~~~~~Wd~f~~ 80 (131)
T PF13902_consen 69 YQNAQLWDDFRN 80 (131)
T ss_pred HHHHHHHHHHhh
Confidence 566777777753
No 11
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=27.07 E-value=23 Score=22.69 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=17.4
Q ss_pred cccCcccccccCcccccccc
Q 048310 4 LVSQRQFFHSHRAQPMAWEQ 23 (102)
Q Consensus 4 ~l~~R~ffhs~t~~pl~~~e 23 (102)
-|+||..|++.+..=++.++
T Consensus 5 KY~NRRLYDT~~s~YiTL~d 24 (64)
T PF07879_consen 5 KYPNRRLYDTETSSYITLED 24 (64)
T ss_pred ccCCCccccCCCceeEeHHH
Confidence 47999999999999888764
No 12
>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1. No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].
Probab=26.31 E-value=23 Score=23.61 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.1
Q ss_pred ccccCccccccc
Q 048310 3 SLVSQRQFFHSH 14 (102)
Q Consensus 3 ~~l~~R~ffhs~ 14 (102)
..|++|.||+|-
T Consensus 30 kkl~~rKYFDSg 41 (86)
T PF04667_consen 30 KKLQKRKYFDSG 41 (86)
T ss_pred hhhccccccchH
Confidence 456779999884
No 13
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=25.34 E-value=37 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=18.2
Q ss_pred hHHHHHhhccccCCchHHHHHHHHHHH
Q 048310 64 WNSFVRKQRVLADGHIPWACEAFTKLY 90 (102)
Q Consensus 64 WN~fv~r~r~~aD~~ip~ac~~Fv~~~ 90 (102)
|..|--+|-..|-..+..+|..|+..|
T Consensus 3 W~EFCE~HA~aaA~dfAk~~~~f~~~n 29 (59)
T PF08916_consen 3 WREFCERHARAAARDFAKAFRRFINEN 29 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666677777777777766
No 14
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.30 E-value=57 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.617 Sum_probs=20.3
Q ss_pred hccCCCChHHHHHHHHhHHHHH
Q 048310 48 DDFVDVTKDEKQMMHMWNSFVR 69 (102)
Q Consensus 48 ~dF~Dv~~~EKefM~lWN~fv~ 69 (102)
++|.+++..|+.+-..||+++.
T Consensus 56 q~fd~Ls~~e~~~~~s~k~~~k 77 (396)
T COG5109 56 QEFDTLSHAEADLVGSWKSLLK 77 (396)
T ss_pred CCcchhhHHHHHHHHHHHHHHH
Confidence 5788999999999999999985
No 15
>PF14998 Ripply: Transcription Regulator
Probab=21.86 E-value=43 Score=22.61 Aligned_cols=10 Identities=60% Similarity=0.810 Sum_probs=6.9
Q ss_pred CCCCCCCccC
Q 048310 26 SDRDSEDEVD 35 (102)
Q Consensus 26 ~d~DSedE~D 35 (102)
.|+|||||.+
T Consensus 78 ~DsdsedeeE 87 (87)
T PF14998_consen 78 EDSDSEDEEE 87 (87)
T ss_pred cCCCcccccC
Confidence 5677777754
No 16
>KOG4616 consensus Mitochondrial ribosomal protein L55 [Translation, ribosomal structure and biogenesis]
Probab=21.25 E-value=51 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.2
Q ss_pred hhccCCCChHHHHHHHHhHH
Q 048310 47 LDDFVDVTKDEKQMMHMWNS 66 (102)
Q Consensus 47 l~dF~Dv~~~EKefM~lWN~ 66 (102)
+-|-.|=|-+||+||+-|.+
T Consensus 110 ~~e~idd~fd~~eymkf~~a 129 (137)
T KOG4616|consen 110 IMEEIDDNFDAKEYMKFIKA 129 (137)
T ss_pred ehhhhhcccCHHHHHHHHhc
Confidence 33556668899999999863
No 17
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=21.20 E-value=36 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=17.5
Q ss_pred cccCcccccccCcccccccc
Q 048310 4 LVSQRQFFHSHRAQPMAWEQ 23 (102)
Q Consensus 4 ~l~~R~ffhs~t~~pl~~~e 23 (102)
-|+||..|++.|..=++.++
T Consensus 5 KY~NRRLYDT~tS~YITLed 24 (107)
T TIGR01848 5 KYPNRRLYDTETSSYVTLED 24 (107)
T ss_pred ccCCCcccCCCccceeeHHH
Confidence 47999999999999988764
No 18
>PF07362 CcdA: Post-segregation antitoxin CcdA; InterPro: IPR009956 This entry consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein [].; PDB: 3HPW_C 2H3C_A 2H3A_B 2ADN_B 2ADL_B.
Probab=21.08 E-value=11 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHhhccccCCc
Q 048310 59 QMMHMWNSFVRKQRVLADGH 78 (102)
Q Consensus 59 efM~lWN~fv~r~r~~aD~~ 78 (102)
+-|..||.||-++|+.+|.+
T Consensus 50 ~ai~~~N~~ve~~G~~~de~ 69 (72)
T PF07362_consen 50 EAIEAYNRFVEEHGLFSDEY 69 (72)
T ss_dssp CSCCSSSHSSSCSSSCSSSC
T ss_pred HHHHHHHHHHHHcCCcHHHc
Confidence 45678899999999999876
No 19
>PF14881 Tubulin_3: Tubulin domain
Probab=21.06 E-value=42 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=13.3
Q ss_pred CcccccccCcccccc
Q 048310 7 QRQFFHSHRAQPMAW 21 (102)
Q Consensus 7 ~R~ffhs~t~~pl~~ 21 (102)
+|.+||++|.++|..
T Consensus 16 ~r~~yhPrSl~~l~~ 30 (180)
T PF14881_consen 16 NRVHYHPRSLNQLND 30 (180)
T ss_pred CcceeCCCceEEcCc
Confidence 689999999998874
No 20
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=20.52 E-value=31 Score=19.69 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=8.9
Q ss_pred HhhccCCCChHH
Q 048310 46 MLDDFVDVTKDE 57 (102)
Q Consensus 46 ~l~dF~Dv~~~E 57 (102)
.|+.|+|++++|
T Consensus 46 ~~N~fsDlt~eE 57 (57)
T smart00848 46 GLNQFADLTNEE 57 (57)
T ss_pred cCcccccCCCCC
Confidence 367888888765
Done!