Query 048310
Match_columns 102
No_of_seqs 77 out of 101
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hpw_C Protein CCDA; alpha+bet 52.5 4.2 0.00014 22.2 0.7 21 58-78 13-33 (36)
2 2l9b_B MRNA 3'-END-processing 51.1 4.8 0.00016 24.0 0.8 13 3-15 16-28 (53)
3 3cuq_A Vacuolar-sorting protei 46.4 5.6 0.00019 29.9 0.7 23 79-101 19-41 (234)
4 1u5t_A Appears to BE functiona 41.3 5.2 0.00018 30.0 -0.2 23 79-101 39-61 (233)
5 2fly_A Proadrenomedullin N-20 37.6 19 0.00065 18.5 1.7 12 59-70 8-19 (26)
6 3rx6_A Polarity suppression pr 33.2 16 0.00056 26.8 1.4 33 65-97 67-99 (190)
7 1j03_A Putative steroid bindin 29.8 35 0.0012 22.0 2.5 27 48-74 70-97 (102)
8 2ph7_A Uncharacterized protein 28.0 11 0.00039 28.6 -0.2 20 3-22 72-91 (246)
9 2l95_A Crammer, LP06209P; cyst 24.2 21 0.00072 21.6 0.6 12 47-58 58-69 (80)
10 3cjs_A L11 mtase, ribosomal pr 24.2 15 0.0005 22.4 -0.2 17 7-24 35-51 (59)
11 4gl3_A Putative glucoamylase; 21.7 1E+02 0.0034 24.7 4.2 52 10-65 104-156 (424)
12 3bqp_A Proactivator polypeptid 21.6 1.2E+02 0.0043 17.3 4.6 46 47-96 15-60 (80)
No 1
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=52.46 E-value=4.2 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHHhhccccCCc
Q 048310 58 KQMMHMWNSFVRKQRVLADGH 78 (102)
Q Consensus 58 KefM~lWN~fv~r~r~~aD~~ 78 (102)
++.|..+|.||-++++.+|.+
T Consensus 13 ~~ai~~~N~~ve~~Gl~~d~~ 33 (36)
T 3hpw_C 13 QEGMAEVARFIEMNGSFADEN 33 (36)
T ss_dssp HHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHc
Confidence 577888899999999877643
No 2
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=51.11 E-value=4.8 Score=24.04 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.0
Q ss_pred ccccCcccccccC
Q 048310 3 SLVSQRQFFHSHR 15 (102)
Q Consensus 3 ~~l~~R~ffhs~t 15 (102)
..|+|||||..--
T Consensus 16 ~vLPKRQYFK~~~ 28 (53)
T 2l9b_B 16 SVIPKRQYFNTNL 28 (53)
T ss_dssp HHSBCGGGGCSSC
T ss_pred HHcchHhhhcccc
Confidence 3589999998643
No 3
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=46.36 E-value=5.6 Score=29.89 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCC
Q 048310 79 IPWACEAFTKLYGHDLVQAPALK 101 (102)
Q Consensus 79 ip~ac~~Fv~~~~~~L~~~~~l~ 101 (102)
+-.+.+.|++.|+..|.++|++|
T Consensus 19 F~~~L~~FA~kH~~eI~~dp~fR 41 (234)
T 3cuq_A 19 FKTNLEEFASKHKQEIRKNPEFR 41 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHcccccccCHHHH
Confidence 35678999999999999999874
No 4
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=41.30 E-value=5.2 Score=30.03 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCC
Q 048310 79 IPWACEAFTKLYGHDLVQAPALK 101 (102)
Q Consensus 79 ip~ac~~Fv~~~~~~L~~~~~l~ 101 (102)
+-.+.+.|++.|+.+|.++|++|
T Consensus 39 F~~~L~~FA~kHk~eI~~dp~fR 61 (233)
T 1u5t_A 39 FQERLVEFAKKHNSELQASPEFR 61 (233)
T ss_dssp HHHHHHHHHHHCTTTTTTCHHHH
T ss_pred HHHHHHHHHHHhHhhcccCHHHH
Confidence 45678999999999999999874
No 5
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=37.64 E-value=19 Score=18.46 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=10.1
Q ss_pred HHHHHhHHHHHh
Q 048310 59 QMMHMWNSFVRK 70 (102)
Q Consensus 59 efM~lWN~fv~r 70 (102)
+|-+.||++++.
T Consensus 8 efrKKwn~w~ls 19 (26)
T 2fly_A 8 EFRKKWNKWALS 19 (26)
T ss_pred HHHHHHHHHHHh
Confidence 678999999875
No 6
>3rx6_A Polarity suppression protein; all alpha protein, transcription termination inhibitor, RHO capsid decoration protein of bacteriophage P4; 2.04A {Enterobacteria phage P4} PDB: 4dvd_A
Probab=33.21 E-value=16 Score=26.83 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHhhccccCCchHHHHHHHHHHHHhhhhcC
Q 048310 65 NSFVRKQRVLADGHIPWACEAFTKLYGHDLVQA 97 (102)
Q Consensus 65 N~fv~r~r~~aD~~ip~ac~~Fv~~~~~~L~~~ 97 (102)
..+|..|..+-...+-..+..|...||+.|.+-
T Consensus 67 g~YI~sH~~v~~i~~~~~l~dFMq~hG~aL~~a 99 (190)
T 3rx6_A 67 GRYIRSHEAVQHISIRDRLNDFMQQHGTALAAA 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345667777777889999999999999999763
No 7
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=29.76 E-value=35 Score=22.04 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=22.2
Q ss_pred hccCCCChHHHHHHHHhHHHHH-hhccc
Q 048310 48 DDFVDVTKDEKQMMHMWNSFVR-KQRVL 74 (102)
Q Consensus 48 ~dF~Dv~~~EKefM~lWN~fv~-r~r~~ 74 (102)
++.+|+++.|++-+..|-.|.. |+.++
T Consensus 70 ~dl~~L~~~e~~~l~~W~~~f~~kY~~V 97 (102)
T 1j03_A 70 PSLEGLTEKEINTLNDWETKFEAKYPVV 97 (102)
T ss_dssp SSCSSCCHHHHHHHHHHHHHHHTTSCEE
T ss_pred CcccCCCHHHHHHHHHHHHHHhccCCee
Confidence 5789999999999999999875 44444
No 8
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=27.97 E-value=11 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=16.9
Q ss_pred ccccCcccccccCccccccc
Q 048310 3 SLVSQRQFFHSHRAQPMAWE 22 (102)
Q Consensus 3 ~~l~~R~ffhs~t~~pl~~~ 22 (102)
..++.|.|||.+|+.|.+++
T Consensus 72 ~~i~g~iFy~~h~~Ky~~~d 91 (246)
T 2ph7_A 72 VKIGDVLFYHPHVIKPEKED 91 (246)
T ss_dssp EEETTEEEEECSSCCCCHHH
T ss_pred EEECCEEEEeccCCCCChHH
Confidence 34789999999999998854
No 9
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=24.25 E-value=21 Score=21.63 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.8
Q ss_pred hhccCCCChHHH
Q 048310 47 LDDFVDVTKDEK 58 (102)
Q Consensus 47 l~dF~Dv~~~EK 58 (102)
|+.|+|++.+|-
T Consensus 58 ~N~FaDlT~eEf 69 (80)
T 2l95_A 58 INHLADLTPEEF 69 (80)
T ss_dssp CCGGGTSSHHHH
T ss_pred CcccccCCHHHH
Confidence 789999999985
No 10
>3cjs_A L11 mtase, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus}
Probab=24.18 E-value=15 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=12.7
Q ss_pred CcccccccCccccccccc
Q 048310 7 QRQFFHSHRAQPMAWEQV 24 (102)
Q Consensus 7 ~R~ffhs~t~~pl~~~e~ 24 (102)
-+.||..+|-.|. ++++
T Consensus 35 v~ayF~~~~dlp~-~gew 51 (59)
T 3cjs_A 35 VWAFFPAPVDLPY-EGVW 51 (59)
T ss_dssp EEEEESSCCCCSS-CCEE
T ss_pred EEEEcCCcccCCC-Ccee
Confidence 3689999999994 4444
No 11
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=21.73 E-value=1e+02 Score=24.74 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=39.5
Q ss_pred cccccCccccccccccCCCCCC-CccChHHHHHHHHHHhhccCCCChHHHHHHHHhH
Q 048310 10 FFHSHRAQPMAWEQVVSDRDSE-DEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWN 65 (102)
Q Consensus 10 ffhs~t~~pl~~~e~~~d~DSe-dE~D~~Wl~~k~r~~l~dF~Dv~~~EKefM~lWN 65 (102)
||+.+|.+|+.+.+. |+. +-+|..+|..-=...=+=|.+-+++|+++-.+=+
T Consensus 104 wyd~~Tg~~l~~~~~----d~~vStVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a~ 156 (424)
T 4gl3_A 104 WMNGKTGKTIPFSRK----DDGADIVESAFMFEGLLAAHQYFTKDNPTENRIRGIIN 156 (424)
T ss_dssp EEETTTCCEECSBTT----BCSEEHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHH
T ss_pred ceeCCCCCCCCCcCC----CCcccHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Confidence 678999999998763 222 4478889887777777789999999999765433
No 12
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=21.65 E-value=1.2e+02 Score=17.29 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=32.1
Q ss_pred hhccCCCChHHHHHHHHhHHHHHhhccccCCchHHHHHHHHHHHHhhhhc
Q 048310 47 LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96 (102)
Q Consensus 47 l~dF~Dv~~~EKefM~lWN~fv~r~r~~aD~~ip~ac~~Fv~~~~~~L~~ 96 (102)
++.+..-|..+.++++.-|..=.+-+. .+...|..||..++..|+.
T Consensus 15 i~~~l~~~~t~~~I~~~l~~~C~~lp~----~~~~~C~~~v~~y~~~ii~ 60 (80)
T 3bqp_A 15 LDRNLEKNSTKQEILAALEKGCSFLPD----PYQKQCDQFVAEYEPVLIE 60 (80)
T ss_dssp HHHHSCTTCCHHHHHHHHHHHGGGSCG----GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhCCC----ccchhhHHHHHHHHHHHHH
Confidence 445555556677788777766544222 3689999999999998764
Done!