BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048311
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
          Length = 265

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 43  QCNQENYSDCCKQGKLYSIFRCSPTVTGHTKATLTLN-SFQKGGDGGGPSECDNQYHSDD 101
           + N+ NY   C   + Y          G     L+ N +++  GD  G +   N Y  + 
Sbjct: 127 EVNEANYPHYCDTTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQ 186

Query: 102 EPVVALSTG-WY 112
           +P VA  TG WY
Sbjct: 187 DPAVAWKTGLWY 198


>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
           Domain
          Length = 202

 Score = 26.9 bits (58), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 22  GVEAGTCNPSGKIRGKKPPPGQCNQENYSDCCKQGKLY 59
           G+   T  P  ++ G KPP GQ  + +  D  +  KLY
Sbjct: 161 GIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLY 198


>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
 pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
          Length = 265

 Score = 26.9 bits (58), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 43  QCNQENYSDCCKQGKLYSIFRCSPTVTGHTKATLTLN-SFQKGGDGGGPSECDNQYHSDD 101
           + N+ NY   C   + Y          G     L+ N +++  GD  G +   N Y  + 
Sbjct: 127 EVNEANYPHYCDTTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQ 186

Query: 102 EPVVALSTG-WY 112
           +P VA  TG WY
Sbjct: 187 DPAVAWKTGLWY 198


>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
           Domain In Complex With Partially Bound Dmso
          Length = 201

 Score = 26.9 bits (58), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 22  GVEAGTCNPSGKIRGKKPPPGQCNQENYSDCCKQGKLY 59
           G+   T  P  ++ G KPP GQ  + +  D  +  KLY
Sbjct: 160 GIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLY 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.132    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,035,267
Number of Sequences: 62578
Number of extensions: 261281
Number of successful extensions: 359
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 10
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)