Query 048311
Match_columns 186
No_of_seqs 208 out of 662
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 99.8 1.7E-18 3.7E-23 136.7 10.0 81 89-184 33-124 (125)
2 PF03330 DPBB_1: Rare lipoprot 99.7 3E-17 6.6E-22 117.6 6.6 65 105-183 2-78 (78)
3 smart00837 DPBB_1 Rare lipopro 99.4 2.9E-13 6.2E-18 100.8 5.9 77 104-183 1-87 (87)
4 PLN00193 expansin-A; Provision 99.3 1.5E-11 3.2E-16 107.5 10.0 93 90-185 48-155 (256)
5 PLN00050 expansin A; Provision 99.2 2.8E-11 6.1E-16 105.3 8.8 92 91-185 44-147 (247)
6 PF00967 Barwin: Barwin family 98.9 3.8E-09 8.3E-14 83.0 5.2 56 114-185 56-116 (119)
7 PRK10672 rare lipoprotein A; P 98.8 3.1E-07 6.7E-12 83.9 15.9 111 46-182 55-167 (361)
8 PLN03023 Expansin-like B1; Pro 98.7 6.1E-08 1.3E-12 84.6 9.6 80 90-184 43-137 (247)
9 TIGR00413 rlpA rare lipoprotei 98.3 4.1E-06 8.9E-11 71.7 9.8 74 88-182 12-87 (208)
10 COG0797 RlpA Lipoproteins [Cel 98.1 5.8E-05 1.3E-09 65.6 11.5 75 88-183 96-174 (233)
11 PF07249 Cerato-platanin: Cera 97.8 0.00012 2.6E-09 57.9 7.8 65 102-185 43-111 (119)
12 COG4305 Endoglucanase C-termin 97.6 0.00016 3.4E-09 61.4 7.0 71 101-185 55-129 (232)
13 TIGR02645 ARCH_P_rylase putati 62.7 26 0.00056 33.9 6.8 45 115-172 26-70 (493)
14 TIGR03327 AMP_phos AMP phospho 46.3 70 0.0015 31.1 6.8 44 116-172 28-71 (500)
15 PRK04350 thymidine phosphoryla 38.7 1.1E+02 0.0024 29.7 6.9 44 118-173 23-66 (490)
16 KOG4106 Uncharacterized conser 33.2 42 0.00091 26.9 2.6 24 114-137 24-47 (125)
17 PF02237 BPL_C: Biotin protein 32.1 87 0.0019 20.2 3.6 21 118-138 2-22 (48)
18 TIGR03170 flgA_cterm flagella 27.9 80 0.0017 23.7 3.4 24 115-138 92-117 (122)
19 COG4332 Uncharacterized protei 25.9 1.5E+02 0.0032 25.7 4.8 52 117-171 30-81 (203)
20 PF08669 GCV_T_C: Glycine clea 20.7 1.4E+02 0.003 21.2 3.3 20 118-137 75-94 (95)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.77 E-value=1.7e-18 Score=136.71 Aligned_cols=81 Identities=26% Similarity=0.455 Sum_probs=71.8
Q ss_pred CCCCCCCCccCCCccEEEeeccccCCCCCCccEEEEEe-----------CCcEEEEEEeeeCCCCCCCCCCCCCCCCCCC
Q 048311 89 GPSECDNQYHSDDEPVVALSTGWYNKGSRCLNYINIYG-----------NGNSVKAKVVDECDSTMGCDSDHDYQPPCRN 157 (186)
Q Consensus 89 g~gaCg~~~~sdsd~VVALstg~~~~~~~CGk~I~It~-----------nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~ 157 (186)
.++||+ ..+.+++++|||++.+|++++.||++++|+. |||+|+++|+|+|| ++|.
T Consensus 33 ~~gAC~-~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP------------~~C~- 98 (125)
T PLN03024 33 TPSACY-RGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCP------------SGCA- 98 (125)
T ss_pred CCcccc-CCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCC------------CCCC-
Confidence 456997 4577889999999999999999999999983 58999999999994 2576
Q ss_pred CeeecCHHHHHHhCCCCCCcEEEEEEE
Q 048311 158 NIVDASKAVWEALGVPQSKGEMEIYWS 184 (186)
Q Consensus 158 n~LDLS~avF~aLg~~~~~G~i~ItW~ 184 (186)
++||||+++|++|+ +.+.|+++|+|.
T Consensus 99 ~~~DLS~~AF~~iA-~~~aG~v~V~y~ 124 (125)
T PLN03024 99 STLDLSREAFAQIA-NPVAGIINIDYI 124 (125)
T ss_pred CceEcCHHHHHHhc-CccCCEEEEEEe
Confidence 59999999999999 788999999996
No 2
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.70 E-value=3e-17 Score=117.59 Aligned_cols=65 Identities=34% Similarity=0.637 Sum_probs=57.6
Q ss_pred EEeeccccCCCCCCccEEEEEe-----C-----C--cEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 048311 105 VALSTGWYNKGSRCLNYINIYG-----N-----G--NSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGV 172 (186)
Q Consensus 105 VALstg~~~~~~~CGk~I~It~-----n-----G--kSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~ 172 (186)
||++..||+++..||++++++. . . |+|+|+|+|+| |+|.+++||||+++|++|+
T Consensus 2 ~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~C-------------p~~~~~~lDLS~~aF~~la- 67 (78)
T PF03330_consen 2 AAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRC-------------PGCPPNHLDLSPAAFKALA- 67 (78)
T ss_dssp EEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE--------------TTSSSSEEEEEHHHHHHTB-
T ss_pred eEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccC-------------CCCcCCEEEeCHHHHHHhC-
Confidence 7899999999999999999986 1 2 99999999999 8899999999999999999
Q ss_pred CCCCcEEEEEE
Q 048311 173 PQSKGEMEIYW 183 (186)
Q Consensus 173 ~~~~G~i~ItW 183 (186)
+.+.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 88999999999
No 3
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.42 E-value=2.9e-13 Score=100.77 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=61.1
Q ss_pred EEEeeccccCCCCCCccEEEEEe--------CCcEEEEEEeeeCCCCCCCCCCCCCCCCC--CCCeeecCHHHHHHhCCC
Q 048311 104 VVALSTGWYNKGSRCLNYINIYG--------NGNSVKAKVVDECDSTMGCDSDHDYQPPC--RNNIVDASKAVWEALGVP 173 (186)
Q Consensus 104 VVALstg~~~~~~~CGk~I~It~--------nGkSV~a~VVD~Cds~~GCd~~~~~~p~C--~~n~LDLS~avF~aLg~~ 173 (186)
.+|+|+.+|+++..||++++|+- ++++|+++|+|+||...+..++. ..-| +..|+|||+.+|.+|+ .
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~--~~~C~~~~~hfDLS~~AF~~iA-~ 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDN--GGWCNPPRKHFDLSQPAFEKIA-Q 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccC--CCccCCCCcCeEcCHHHHHHHh-h
Confidence 37999999999999999999982 45799999999997542221110 0236 3479999999999999 7
Q ss_pred CCCcEEEEEE
Q 048311 174 QSKGEMEIYW 183 (186)
Q Consensus 174 ~~~G~i~ItW 183 (186)
...|+|+|+|
T Consensus 78 ~~~Gvi~v~y 87 (87)
T smart00837 78 YKAGIVPVKY 87 (87)
T ss_pred hcCCEEeeEC
Confidence 8899999987
No 4
>PLN00193 expansin-A; Provisional
Probab=99.29 E-value=1.5e-11 Score=107.47 Aligned_cols=93 Identities=20% Similarity=0.365 Sum_probs=69.7
Q ss_pred CCCCCCCc---cCCCccEEEeeccccCCCCCCccEEEEEe----------CCcEEEEEEeeeCCCCCCCCCCCCCCCCCC
Q 048311 90 PSECDNQY---HSDDEPVVALSTGWYNKGSRCLNYINIYG----------NGNSVKAKVVDECDSTMGCDSDHDYQPPCR 156 (186)
Q Consensus 90 ~gaCg~~~---~sdsd~VVALstg~~~~~~~CGk~I~It~----------nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~ 156 (186)
-||||-.- ....-+++||++..|+++..||++++|+- +|++|+++|+|.||...+= .-+...-|.
T Consensus 48 gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~--~~~~ggwC~ 125 (256)
T PLN00193 48 GGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYAL--PNNNGGWCN 125 (256)
T ss_pred CcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccc--cccCCCcCC
Confidence 36999431 11246899999999999999999999984 4679999999999742110 000012263
Q ss_pred --CCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 048311 157 --NNIVDASKAVWEALGVPQSKGEMEIYWSD 185 (186)
Q Consensus 157 --~n~LDLS~avF~aLg~~~~~G~i~ItW~~ 185 (186)
..|+|||+.+|.+|+ ....|+++|+|.-
T Consensus 126 ~~~~HFDLS~~AF~~iA-~~~~Giv~V~yrR 155 (256)
T PLN00193 126 PPLQHFDMAQPAWEKIG-IYRGGIVPVLFQR 155 (256)
T ss_pred CCCcccccCHHHHHHHh-hhcCCeEeEEEEE
Confidence 379999999999999 6789999999963
No 5
>PLN00050 expansin A; Provisional
Probab=99.24 E-value=2.8e-11 Score=105.27 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=69.8
Q ss_pred CCCCCCcc---CCCccEEEeeccccCCCCCCccEEEEEe-CC------cEEEEEEeeeCCCCCCCCCCCCCCCCCC--CC
Q 048311 91 SECDNQYH---SDDEPVVALSTGWYNKGSRCLNYINIYG-NG------NSVKAKVVDECDSTMGCDSDHDYQPPCR--NN 158 (186)
Q Consensus 91 gaCg~~~~---sdsd~VVALstg~~~~~~~CGk~I~It~-nG------kSV~a~VVD~Cds~~GCd~~~~~~p~C~--~n 158 (186)
||||-... .-..+++||++.+|+++..||.+++|+- ++ ++|+++|+|+||...+..++ ...-|. ..
T Consensus 44 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~--~~gwC~~~~~ 121 (247)
T PLN00050 44 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNN--DGGWCNPPQQ 121 (247)
T ss_pred cccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCcc--CCCcCCCCCc
Confidence 69993321 1256899999999999999999999995 22 48999999999753221100 012273 48
Q ss_pred eeecCHHHHHHhCCCCCCcEEEEEEEe
Q 048311 159 IVDASKAVWEALGVPQSKGEMEIYWSD 185 (186)
Q Consensus 159 ~LDLS~avF~aLg~~~~~G~i~ItW~~ 185 (186)
|+|||+.+|.+|+ ....|+|+|+|.-
T Consensus 122 hFDLS~~AF~~iA-~~~aGii~V~yRR 147 (247)
T PLN00050 122 HFDLSQPVFQKIA-QYKAGIVPVQYRR 147 (247)
T ss_pred ccccCHHHHHHHh-hhcCCeeeeEEEE
Confidence 9999999999999 7889999999963
No 6
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.85 E-value=3.8e-09 Score=82.99 Aligned_cols=56 Identities=18% Similarity=0.430 Sum_probs=41.6
Q ss_pred CCCCCccEEEEEe--CCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCC---CCcEEEEEEEe
Q 048311 114 KGSRCLNYINIYG--NGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGVPQ---SKGEMEIYWSD 185 (186)
Q Consensus 114 ~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~~~---~~G~i~ItW~~ 185 (186)
+...|||+++||. +|.+++++|||+| .++.|||.+.||.+|-.+- ..|.+.|+|+|
T Consensus 56 gq~~CGkClrVTNt~tga~~~~RIVDqC----------------snGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~f 116 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTATGAQVTVRIVDQC----------------SNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEF 116 (119)
T ss_dssp SGGGTT-EEEEE-TTT--EEEEEEEEE-----------------SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEE
T ss_pred CcccccceEEEEecCCCcEEEEEEEEcC----------------CCCCcccChhHHhhhccCCcccccceEEEEEEE
Confidence 3568999999997 7999999999999 4568999999999997322 37999999987
No 7
>PRK10672 rare lipoprotein A; Provisional
Probab=98.78 E-value=3.1e-07 Score=83.94 Aligned_cols=111 Identities=17% Similarity=0.253 Sum_probs=80.3
Q ss_pred CCCCCccccCCeeeeeeeeCCCccccceeEEEecccccCCCCCCCCCCCCCccCCCccEEEeeccccCCCCCCccEEEEE
Q 048311 46 QENYSDCCKQGKLYSIFRCSPTVTGHTKATLTLNSFQKGGDGGGPSECDNQYHSDDEPVVALSTGWYNKGSRCLNYINIY 125 (186)
Q Consensus 46 ~~~~~~cc~~g~~y~~~~csp~v~~~t~a~lt~n~f~~g~dgGg~gaCg~~~~sdsd~VVALstg~~~~~~~CGk~I~It 125 (186)
..+..+-=+.||.|...+=....+..-.|..|-..| .|..+|-|+.|+. ..|.+|-.+- --+-.|+|+
T Consensus 55 ~~~n~~Y~v~G~~Y~~~~~~~~~~~~G~ASwYg~~f-----~G~~TA~Ge~~~~-~~~tAAH~tL------Plps~vrVt 122 (361)
T PRK10672 55 PTANQDYQRNGKSYKIVQDPSNFSQAGLAAIYDAEA-----GSNLTASGERFDP-NALTAAHPTL------PIPSYVRVT 122 (361)
T ss_pred ccCCCCeEECCEEEEeCccCCCcceEEEEEEeCCcc-----CCCcCcCceeecC-CcCeeeccCC------CCCCEEEEE
Confidence 444456778899999864222333344455544444 4788999977764 6677765532 477899999
Q ss_pred e--CCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEEEE
Q 048311 126 G--NGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGVPQSKGEMEIY 182 (186)
Q Consensus 126 ~--nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~~~~~G~i~It 182 (186)
. |||+|+++|.|++++..| ..||||.+++++|+. ...++++|+
T Consensus 123 Nl~ngrsvvVrVnDRGP~~~g-------------RiiDLS~aAA~~Lg~-~~~~~V~ve 167 (361)
T PRK10672 123 NLANGRMIVVRINDRGPYGPG-------------RVIDLSRAAADRLNT-SNNTKVRID 167 (361)
T ss_pred ECCCCcEEEEEEeCCCCCCCC-------------CeeEcCHHHHHHhCC-CCCceEEEE
Confidence 7 999999999999976543 699999999999995 456777765
No 8
>PLN03023 Expansin-like B1; Provisional
Probab=98.74 E-value=6.1e-08 Score=84.56 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCCCCCCc---cCCCccEEEeeccccCCCCCCccEEEEEe------CCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCee
Q 048311 90 PSECDNQY---HSDDEPVVALSTGWYNKGSRCLNYINIYG------NGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIV 160 (186)
Q Consensus 90 ~gaCg~~~---~sdsd~VVALstg~~~~~~~CGk~I~It~------nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~L 160 (186)
-||||-.- ....-+++|++ .+|+++..||.+.+|+- .+++|+++|+|.| +++ ..|+
T Consensus 43 gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd~~-------------~~~-~~hF 107 (247)
T PLN03023 43 TGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYG-------------EGD-KTDF 107 (247)
T ss_pred CccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEeCC-------------CCC-CCcc
Confidence 35897321 22245789998 99999999999999984 4568999999999 333 5799
Q ss_pred ecCHHHHHHhCCC------CCCcEEEEEEE
Q 048311 161 DASKAVWEALGVP------QSKGEMEIYWS 184 (186)
Q Consensus 161 DLS~avF~aLg~~------~~~G~i~ItW~ 184 (186)
|||..+|.+|+.+ ...|+|+|++.
T Consensus 108 dLS~~AF~~iA~pg~~~~l~~aGiv~v~Yr 137 (247)
T PLN03023 108 ILSPRAYARLARPNMAAELFAYGVVDVEYR 137 (247)
T ss_pred ccCHHHHHHHhCccccchhccCcEEEeEEE
Confidence 9999999999932 24599999874
No 9
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.33 E-value=4.1e-06 Score=71.70 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCCCCCCCCccCCCccEEEeeccccCCCCCCccEEEEEe--CCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHH
Q 048311 88 GGPSECDNQYHSDDEPVVALSTGWYNKGSRCLNYINIYG--NGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKA 165 (186)
Q Consensus 88 Gg~gaCg~~~~sdsd~VVALstg~~~~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~a 165 (186)
|..+|.|+.|+. ..|.+|-.+- ..|-.|+|+. |||+|+++|.|++|+..| ..||||++
T Consensus 12 G~~TAnGe~y~~-~~~tAAHktL------PlgT~V~VtNl~ngrsviVrVnDRGPf~~g-------------RiIDLS~a 71 (208)
T TIGR00413 12 GRKTANGEVYNM-KALTAAHKTL------PFNTYVKVTNLHNNRSVIVRINDRGPFSDD-------------RIIDLSHA 71 (208)
T ss_pred CCcCCCCeecCC-CccccccccC------CCCCEEEEEECCCCCEEEEEEeCCCCCCCC-------------CEEECCHH
Confidence 778999977765 5666665532 5888999996 999999999999976544 69999999
Q ss_pred HHHHhCCCCCCcEEEEE
Q 048311 166 VWEALGVPQSKGEMEIY 182 (186)
Q Consensus 166 vF~aLg~~~~~G~i~It 182 (186)
++++|+ -.+.|+.+|.
T Consensus 72 AA~~Lg-~~~~G~a~V~ 87 (208)
T TIGR00413 72 AAREIG-LISRGVGQVR 87 (208)
T ss_pred HHHHcC-CCcCceEEEE
Confidence 999999 5667777654
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=5.8e-05 Score=65.65 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=54.1
Q ss_pred CCCCCCCCCccCCCccEEEeeccccCCCCCCccEEEEEe--CCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHH
Q 048311 88 GGPSECDNQYHSDDEPVVALSTGWYNKGSRCLNYINIYG--NGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKA 165 (186)
Q Consensus 88 Gg~gaCg~~~~sdsd~VVALstg~~~~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~a 165 (186)
|..+|=|+.|+. ..+.+|=.+= -=+-.++|+. |||+|+++|.|+.|+..| .+||||.+
T Consensus 96 gr~TA~Ge~~n~-~~~tAAH~TL------P~~t~v~VtNl~NgrsvvVRINDRGPf~~g-------------RiIDlS~a 155 (233)
T COG0797 96 GRKTANGERYDM-NALTAAHKTL------PLPTYVRVTNLDNGRSVVVRINDRGPFVSG-------------RIIDLSKA 155 (233)
T ss_pred CccccCcccccc-cccccccccC------CCCCEEEEEEccCCcEEEEEEeCCCCCCCC-------------cEeEcCHH
Confidence 555566644443 3444443322 3567899997 999999999999976644 79999999
Q ss_pred HHHHhCCCCCCcEEE--EEE
Q 048311 166 VWEALGVPQSKGEME--IYW 183 (186)
Q Consensus 166 vF~aLg~~~~~G~i~--ItW 183 (186)
++++|+ -...|+.+ |+|
T Consensus 156 AA~~l~-~~~~G~a~V~i~~ 174 (233)
T COG0797 156 AADKLG-MIRSGVAKVRIEV 174 (233)
T ss_pred HHHHhC-CccCceEEEEEEE
Confidence 999999 66777775 554
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=97.78 E-value=0.00012 Score=57.85 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=47.0
Q ss_pred ccEEEee--ccccCCCCCCccEEEEEeCCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC--CCCCc
Q 048311 102 EPVVALS--TGWYNKGSRCLNYINIYGNGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGV--PQSKG 177 (186)
Q Consensus 102 d~VVALs--tg~~~~~~~CGk~I~It~nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~--~~~~G 177 (186)
-+|.+.. ++| +.+.||++.+++++||+|.+..+|.=+ ..+++|+++|+.|.. ....|
T Consensus 43 p~IGg~~~V~gW--nS~~CGtC~~lty~g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~a~~lG 103 (119)
T PF07249_consen 43 PYIGGAPAVAGW--NSPNCGTCWKLTYNGRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQAVELG 103 (119)
T ss_dssp TSEEEETT--ST--T-TTTT-EEEEEETTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-CCCC-
T ss_pred CeeccccccccC--CCCCCCCeEEEEECCeEEEEEEEecCC-----------------CcccchHHHHHHhcCCccccee
Confidence 3466665 355 468999999999999999999999852 369999999999964 34589
Q ss_pred EEEEEEEe
Q 048311 178 EMEIYWSD 185 (186)
Q Consensus 178 ~i~ItW~~ 185 (186)
+|++++..
T Consensus 104 ~V~a~~~q 111 (119)
T PF07249_consen 104 RVDATYTQ 111 (119)
T ss_dssp EEE-EEEE
T ss_pred EEEEEEEE
Confidence 99999864
No 12
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00016 Score=61.44 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=59.3
Q ss_pred CccEEEeeccccCC----CCCCccEEEEEeCCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCC
Q 048311 101 DEPVVALSTGWYNK----GSRCLNYINIYGNGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGVPQSK 176 (186)
Q Consensus 101 sd~VVALstg~~~~----~~~CGk~I~It~nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~~~~~ 176 (186)
+.-|-||+....|- ...-|..++|+....+.++.|.|.- |.=..+.|||||.+|.++| +..+
T Consensus 55 d~eITAlNPaqlNlGGipAAmAGaYLrVqGPKG~TTVYVTDlY-------------PegasGaLDLSpNAFakIG-nm~q 120 (232)
T COG4305 55 DMEITALNPAQLNLGGIPAAMAGAYLRVQGPKGKTTVYVTDLY-------------PEGASGALDLSPNAFAKIG-NMKQ 120 (232)
T ss_pred cceeeecCHHHcccCCchhhhccceEEEECCCCceEEEEeccc-------------ccccccccccChHHHhhhc-chhc
Confidence 45588999988883 3578999999995445568899988 5556789999999999999 8999
Q ss_pred cEEEEEEEe
Q 048311 177 GEMEIYWSD 185 (186)
Q Consensus 177 G~i~ItW~~ 185 (186)
|+|+|.|..
T Consensus 121 GrIpvqWrv 129 (232)
T COG4305 121 GRIPVQWRV 129 (232)
T ss_pred CccceeEEE
Confidence 999999974
No 13
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=62.69 E-value=26 Score=33.94 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCCCccEEEEEeCCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 048311 115 GSRCLNYINIYGNGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGV 172 (186)
Q Consensus 115 ~~~CGk~I~It~nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~ 172 (186)
+-.=+.+|+|+.++|++.|.|++.= .. =.++.+-||..+|++|+.
T Consensus 26 g~~~~~rv~v~~~~~~~~a~~~~~~-~~------------~~~~~~gl~~~~~~~l~~ 70 (493)
T TIGR02645 26 GFTPQDRVEVRIGGKSLIAILVGSD-TL------------VEMGEIGLSVSAVETFMA 70 (493)
T ss_pred CCCcCCeEEEEeCCEEEEEEEeccc-cc------------ccCCeeeccHHHHHHcCC
Confidence 3445789999999999999888631 11 134689999999999984
No 14
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=46.29 E-value=70 Score=31.15 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCCccEEEEEeCCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 048311 116 SRCLNYINIYGNGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGV 172 (186)
Q Consensus 116 ~~CGk~I~It~nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~ 172 (186)
-.=+.+|+|+.++|++.|+|.=. ++.- .++.+-||..+|++|+.
T Consensus 28 ~~~~~rv~v~~~~~~~~a~~~~~-~~~~------------~~g~~gls~~~~~~l~~ 71 (500)
T TIGR03327 28 VHPGDRVRIESGGKSVVGIVDST-DTLV------------EKGEIGLSHEVLEELGI 71 (500)
T ss_pred CCCCCeEEEEeCCEEEEEEEEcc-cccc------------cCCeeeccHHHHHHcCC
Confidence 34467899999999999887643 2221 34689999999999984
No 15
>PRK04350 thymidine phosphorylase; Provisional
Probab=38.69 E-value=1.1e+02 Score=29.69 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=32.4
Q ss_pred CccEEEEEeCCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCC
Q 048311 118 CLNYINIYGNGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALGVP 173 (186)
Q Consensus 118 CGk~I~It~nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg~~ 173 (186)
=+.+|+|+.+++++.|++.=.=+.. =.++.+-||..+|++|+..
T Consensus 23 ~~~rv~v~~~~~~~~a~~~~~~~~~------------~~~~~~gl~~~~~~~l~~~ 66 (490)
T PRK04350 23 AGDRVEVRAGGRSIIATLNITDDDL------------VGPGEIGLSESAFRRLGVS 66 (490)
T ss_pred cCCeEEEEcCCeEEEEEEEeccccc------------cCCCcccccHHHHHHhCCC
Confidence 4779999999999998765432111 1335899999999999843
No 16
>KOG4106 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.21 E-value=42 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.2
Q ss_pred CCCCCccEEEEEeCCcEEEEEEee
Q 048311 114 KGSRCLNYINIYGNGNSVKAKVVD 137 (186)
Q Consensus 114 ~~~~CGk~I~It~nGkSV~a~VVD 137 (186)
++++|...+-|+.|||||+|.==|
T Consensus 24 ~sp~lve~vavt~nGRTIvawHP~ 47 (125)
T KOG4106|consen 24 DSPRLVEKVAVTANGRTIVAWHPP 47 (125)
T ss_pred CCcceeeeEEEecCCcEEEEecCC
Confidence 467899999999999999986544
No 17
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=32.06 E-value=87 Score=20.24 Aligned_cols=21 Identities=0% Similarity=-0.089 Sum_probs=18.1
Q ss_pred CccEEEEEeCCcEEEEEEeee
Q 048311 118 CLNYINIYGNGNSVKAKVVDE 138 (186)
Q Consensus 118 CGk~I~It~nGkSV~a~VVD~ 138 (186)
-||.|+|..+++.+.+++.|-
T Consensus 2 lG~~V~v~~~~~~~~G~~~gI 22 (48)
T PF02237_consen 2 LGQEVRVETGDGEIEGIAEGI 22 (48)
T ss_dssp TTSEEEEEETSCEEEEEEEEE
T ss_pred CCCEEEEEECCeEEEEEEEEE
Confidence 489999999888999988875
No 18
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=27.92 E-value=80 Score=23.66 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.3
Q ss_pred CCCCccEEEEEe--CCcEEEEEEeee
Q 048311 115 GSRCLNYINIYG--NGNSVKAKVVDE 138 (186)
Q Consensus 115 ~~~CGk~I~It~--nGkSV~a~VVD~ 138 (186)
...=|..|+|.. .||.+.|+|++.
T Consensus 92 ~g~~G~~I~V~N~~s~k~i~~~V~~~ 117 (122)
T TIGR03170 92 DGAVGDQIRVRNLSSGKIISGIVTGP 117 (122)
T ss_pred ccCCCCEEEEEECCCCCEEEEEEeCC
Confidence 346789999996 799999999874
No 19
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.89 E-value=1.5e+02 Score=25.74 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=38.6
Q ss_pred CCccEEEEEeCCcEEEEEEeeeCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhC
Q 048311 117 RCLNYINIYGNGNSVKAKVVDECDSTMGCDSDHDYQPPCRNNIVDASKAVWEALG 171 (186)
Q Consensus 117 ~CGk~I~It~nGkSV~a~VVD~Cds~~GCd~~~~~~p~C~~n~LDLS~avF~aLg 171 (186)
.|.-+++|.+|||..+|...=+|- -||..-++.-==.-|-=|.+|.+.++|-
T Consensus 30 ~cSg~fRvNAq~K~LDvWlIYkC~---~Cd~tWN~~IfeR~~~~~Iep~lleal~ 81 (203)
T COG4332 30 TCSGKFRVNAQGKVLDVWLIYKCT---HCDYTWNISIFERLNVSDIEPDLLEALM 81 (203)
T ss_pred eecCcEEEcCCCcEEEEEEEEEee---ccCCccchhhhhccCcccCCHHHHHHHH
Confidence 578889999999999999999994 4665544322111245689999999996
No 20
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=20.74 E-value=1.4e+02 Score=21.24 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=16.9
Q ss_pred CccEEEEEeCCcEEEEEEee
Q 048311 118 CLNYINIYGNGNSVKAKVVD 137 (186)
Q Consensus 118 CGk~I~It~nGkSV~a~VVD 137 (186)
=|..++|...|+.+.|+|+|
T Consensus 75 ~g~~l~v~~~g~~~~a~v~~ 94 (95)
T PF08669_consen 75 PGTELEVEIRGKRVPATVVK 94 (95)
T ss_dssp TTSEEEEEETTEEEEEEEE-
T ss_pred CCCEEEEEECCEEEEEEEeC
Confidence 37788999899999999987
Done!