Query 048313
Match_columns 252
No_of_seqs 247 out of 1159
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 4E-36 1.4E-40 250.8 6.9 178 71-250 1-193 (193)
2 3hcs_A TNF receptor-associated 99.9 2.4E-23 8.3E-28 169.9 4.9 120 14-141 17-143 (170)
3 3hct_A TNF receptor-associated 99.6 1.2E-16 4.2E-21 122.6 3.5 87 14-106 17-110 (118)
4 1rmd_A RAG1; V(D)J recombinati 99.6 3E-16 1E-20 119.8 3.9 86 14-105 22-115 (116)
5 3knv_A TNF receptor-associated 99.6 8.4E-17 2.9E-21 127.4 -0.4 85 14-104 30-131 (141)
6 1t1h_A Gspef-atpub14, armadill 98.9 2.5E-10 8.5E-15 80.5 0.9 59 13-75 6-71 (78)
7 3ztg_A E3 ubiquitin-protein li 98.8 6.3E-10 2.2E-14 80.9 1.4 63 13-79 11-83 (92)
8 2egp_A Tripartite motif-contai 98.8 9.7E-10 3.3E-14 77.4 0.6 55 14-72 11-78 (79)
9 2y43_A E3 ubiquitin-protein li 98.8 7.9E-10 2.7E-14 81.6 -0.1 60 14-76 21-86 (99)
10 2ecv_A Tripartite motif-contai 98.7 1.9E-09 6.5E-14 76.7 1.0 55 14-72 18-84 (85)
11 2kr4_A Ubiquitin conjugation f 98.7 2.2E-09 7.4E-14 77.3 1.2 59 13-75 12-76 (85)
12 4ayc_A E3 ubiquitin-protein li 98.7 2.1E-09 7.3E-14 84.2 1.0 44 14-61 52-98 (138)
13 2ckl_A Polycomb group ring fin 98.7 3E-09 1E-13 79.7 1.8 59 14-75 14-82 (108)
14 1bor_A Transcription factor PM 98.7 3.1E-09 1.1E-13 70.3 1.4 46 12-61 3-48 (56)
15 2kre_A Ubiquitin conjugation f 98.7 3.2E-09 1.1E-13 78.8 1.5 59 13-75 27-91 (100)
16 3fl2_A E3 ubiquitin-protein li 98.7 2.3E-09 7.9E-14 82.3 0.7 57 14-74 51-115 (124)
17 1jm7_B BARD1, BRCA1-associated 98.7 4E-09 1.4E-13 80.2 2.0 59 14-75 21-83 (117)
18 2ecw_A Tripartite motif-contai 98.7 2E-09 6.8E-14 76.5 0.2 55 14-72 18-84 (85)
19 2csy_A Zinc finger protein 183 98.7 4.5E-09 1.5E-13 74.5 1.8 57 13-73 13-74 (81)
20 1wgm_A Ubiquitin conjugation f 98.7 3.7E-09 1.3E-13 78.1 1.2 60 13-76 20-86 (98)
21 3lrq_A E3 ubiquitin-protein li 98.7 2.3E-09 8E-14 79.3 0.0 45 14-61 21-69 (100)
22 2djb_A Polycomb group ring fin 98.7 6.7E-09 2.3E-13 72.0 2.2 45 14-61 14-61 (72)
23 2ckl_B Ubiquitin ligase protei 98.6 3.9E-09 1.3E-13 85.0 0.7 61 14-77 53-121 (165)
24 2ysl_A Tripartite motif-contai 98.6 9.4E-09 3.2E-13 71.2 2.4 45 13-61 18-68 (73)
25 1z6u_A NP95-like ring finger p 98.6 4.6E-09 1.6E-13 83.6 0.7 58 14-75 77-142 (150)
26 2ecy_A TNF receptor-associated 98.6 1.2E-08 3.9E-13 69.5 2.1 45 13-61 13-61 (66)
27 2d8t_A Dactylidin, ring finger 98.6 1.4E-08 4.9E-13 70.1 2.3 46 12-61 12-60 (71)
28 1chc_A Equine herpes virus-1 r 98.5 4E-08 1.4E-12 67.0 3.3 46 13-61 3-51 (68)
29 1g25_A CDK-activating kinase a 98.5 1.8E-08 6.2E-13 68.3 1.2 45 14-61 2-54 (65)
30 1e4u_A Transcriptional repress 98.5 1.7E-08 5.9E-13 71.4 1.0 48 13-61 9-61 (78)
31 2yur_A Retinoblastoma-binding 98.5 3.3E-08 1.1E-12 68.9 2.2 45 13-61 13-63 (74)
32 3ng2_A RNF4, snurf, ring finge 98.5 2.1E-08 7.1E-13 68.9 0.9 47 12-61 7-62 (71)
33 2yu4_A E3 SUMO-protein ligase 98.5 2.8E-08 9.7E-13 72.7 1.5 61 13-76 5-80 (94)
34 2c2l_A CHIP, carboxy terminus 98.5 3.1E-08 1.1E-12 85.5 1.9 60 12-75 205-271 (281)
35 1jm7_A BRCA1, breast cancer ty 98.5 6.2E-09 2.1E-13 78.1 -2.4 44 14-61 20-69 (112)
36 2ct2_A Tripartite motif protei 98.5 3.4E-08 1.2E-12 70.7 1.5 45 13-61 13-67 (88)
37 2xeu_A Ring finger protein 4; 98.5 2.4E-08 8.2E-13 67.1 0.6 45 14-61 2-55 (64)
38 4ic3_A E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 68.6 1.2 43 14-61 23-66 (74)
39 2ysj_A Tripartite motif-contai 98.4 5.4E-08 1.8E-12 65.4 1.3 40 13-56 18-63 (63)
40 2ea6_A Ring finger protein 4; 98.4 4.8E-08 1.6E-12 66.6 1.0 46 13-61 13-67 (69)
41 3l11_A E3 ubiquitin-protein li 98.4 4.8E-08 1.6E-12 73.8 1.0 45 13-61 13-61 (115)
42 2ecm_A Ring finger and CHY zin 98.4 1.9E-07 6.4E-12 60.8 3.5 49 13-61 3-54 (55)
43 1iym_A EL5; ring-H2 finger, ub 98.4 1.6E-07 5.5E-12 61.2 2.9 48 14-61 4-54 (55)
44 2ecg_A Baculoviral IAP repeat- 98.4 4.1E-08 1.4E-12 68.7 -0.5 43 15-62 25-68 (75)
45 2ect_A Ring finger protein 126 98.3 3.4E-07 1.2E-11 64.1 4.0 45 14-61 14-63 (78)
46 2f42_A STIP1 homology and U-bo 98.3 9E-08 3.1E-12 78.1 1.1 59 13-75 104-169 (179)
47 1x4j_A Ring finger protein 38; 98.3 3.1E-07 1E-11 63.9 3.4 46 13-61 21-71 (75)
48 2kiz_A E3 ubiquitin-protein li 98.3 2.7E-07 9.4E-12 63.0 2.6 48 13-61 12-62 (69)
49 4ap4_A E3 ubiquitin ligase RNF 98.3 1.7E-07 5.9E-12 71.9 1.3 48 11-61 3-59 (133)
50 2ecj_A Tripartite motif-contai 98.3 2.2E-07 7.6E-12 61.1 1.4 39 14-56 14-58 (58)
51 2ep4_A Ring finger protein 24; 98.2 5.4E-07 1.8E-11 62.4 2.8 46 13-61 13-63 (74)
52 2ea5_A Cell growth regulator w 98.2 4.2E-07 1.4E-11 62.4 1.8 45 12-61 12-57 (68)
53 2yho_A E3 ubiquitin-protein li 98.2 3.4E-07 1.2E-11 64.7 1.2 42 15-61 18-60 (79)
54 2l0b_A E3 ubiquitin-protein li 98.2 6.9E-07 2.4E-11 64.7 2.5 47 14-61 39-88 (91)
55 2ecn_A Ring finger protein 141 98.2 2.1E-07 7E-12 63.8 -0.3 44 13-61 13-59 (70)
56 3htk_C E3 SUMO-protein ligase 98.1 3.6E-07 1.2E-11 78.4 -0.1 60 12-74 178-247 (267)
57 2ecl_A Ring-box protein 2; RNF 98.1 1.3E-06 4.3E-11 61.9 2.7 49 10-61 10-75 (81)
58 1v87_A Deltex protein 2; ring- 98.0 1.7E-06 5.7E-11 65.0 2.0 46 13-61 23-93 (114)
59 2yre_A F-box only protein 30; 98.0 3.1E-06 1.1E-10 61.9 3.0 51 76-129 37-89 (100)
60 2yuc_A TNF receptor-associated 97.9 2.9E-06 1E-10 59.1 2.2 54 75-134 15-69 (76)
61 3t6p_A Baculoviral IAP repeat- 97.9 4.5E-06 1.5E-10 74.8 3.6 43 14-61 294-337 (345)
62 4ap4_A E3 ubiquitin ligase RNF 97.9 1.9E-06 6.6E-11 65.9 1.1 49 10-61 67-124 (133)
63 2vje_A E3 ubiquitin-protein li 97.9 3.6E-06 1.2E-10 56.9 1.5 46 13-61 6-56 (64)
64 3dpl_R Ring-box protein 1; ubi 97.9 1.3E-05 4.4E-10 59.8 4.4 55 5-62 27-101 (106)
65 2y1n_A E3 ubiquitin-protein li 97.8 4.3E-06 1.5E-10 75.8 1.8 44 15-62 332-379 (389)
66 2yre_A F-box only protein 30; 97.8 1.5E-05 5.2E-10 58.3 4.2 70 39-110 14-98 (100)
67 2yuc_A TNF receptor-associated 97.8 2.3E-06 7.7E-11 59.7 -0.6 49 92-141 2-50 (76)
68 2vje_B MDM4 protein; proto-onc 97.7 8.3E-06 2.8E-10 54.9 1.0 45 14-61 6-55 (63)
69 3vk6_A E3 ubiquitin-protein li 97.6 4.4E-05 1.5E-09 55.7 4.2 81 17-135 3-89 (101)
70 4a0k_B E3 ubiquitin-protein li 97.6 2E-05 7E-10 59.7 1.7 54 5-61 38-111 (117)
71 1wim_A KIAA0161 protein; ring 97.5 2.9E-05 1E-09 56.2 1.2 44 13-59 3-61 (94)
72 2bay_A PRE-mRNA splicing facto 97.4 4.6E-05 1.6E-09 50.9 1.8 44 15-61 3-49 (61)
73 2d9k_A FLN29 gene product; zin 97.2 9.1E-05 3.1E-09 51.3 1.1 49 75-129 16-64 (75)
74 3hcs_A TNF receptor-associated 96.9 0.00071 2.4E-08 54.1 3.8 50 74-129 108-158 (170)
75 2d8s_A Cellular modulator of i 95.5 0.0064 2.2E-07 42.6 2.2 48 12-61 12-69 (80)
76 3k1l_B Fancl; UBC, ring, RWD, 94.8 0.0059 2E-07 54.3 0.4 48 14-61 307-372 (381)
77 3hct_A TNF receptor-associated 94.6 0.0068 2.3E-07 45.3 0.4 62 68-133 45-109 (118)
78 2ct0_A Non-SMC element 1 homol 94.3 0.032 1.1E-06 38.5 3.1 44 14-61 14-63 (74)
79 2eod_A TNF receptor-associated 94.0 0.049 1.7E-06 35.5 3.6 53 76-133 10-63 (66)
80 1rmd_A RAG1; V(D)J recombinati 93.9 0.016 5.5E-07 43.0 1.1 75 51-129 24-111 (116)
81 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.022 7.6E-07 41.1 1.4 32 14-48 2-35 (101)
82 2d9k_A FLN29 gene product; zin 91.9 0.033 1.1E-06 38.0 0.2 42 93-137 3-45 (75)
83 2yt9_A Zinc finger-containing 91.8 0.24 8.3E-06 34.1 4.8 77 52-134 9-92 (95)
84 2dlq_A GLI-kruppel family memb 90.1 0.43 1.5E-05 34.4 5.0 108 14-134 6-121 (124)
85 2dmd_A Zinc finger protein 64, 88.8 0.56 1.9E-05 32.3 4.5 78 51-134 9-91 (96)
86 2gli_A Protein (five-finger GL 88.4 0.76 2.6E-05 34.6 5.4 55 75-131 96-154 (155)
87 1ubd_C Protein (YY1 zinc finge 88.2 0.44 1.5E-05 34.5 3.8 112 11-132 1-119 (124)
88 1z60_A TFIIH basal transcripti 87.7 0.27 9.4E-06 32.2 2.1 37 17-56 17-58 (59)
89 2cup_A Skeletal muscle LIM-pro 87.6 0.21 7.1E-06 35.7 1.6 46 13-61 31-77 (101)
90 2rpc_A Zinc finger protein ZIC 87.0 0.95 3.2E-05 34.2 5.2 81 51-133 63-148 (155)
91 2jne_A Hypothetical protein YF 86.9 0.13 4.3E-06 37.1 0.1 38 16-61 33-72 (101)
92 2j7j_A Transcription factor II 85.8 0.52 1.8E-05 31.4 2.8 76 52-131 3-85 (85)
93 2xqn_T Testin, TESS; metal-bin 85.3 0.42 1.4E-05 35.5 2.3 46 13-61 28-74 (126)
94 3knv_A TNF receptor-associated 84.5 0.25 8.6E-06 38.0 0.7 26 104-129 102-128 (141)
95 1wg2_A Zinc finger (AN1-like) 84.4 1.3 4.4E-05 29.4 4.0 42 16-60 16-57 (64)
96 2gli_A Protein (five-finger GL 84.0 1.2 4.2E-05 33.4 4.5 58 74-133 65-125 (155)
97 2ee8_A Protein ODD-skipped-rel 83.8 1.6 5.5E-05 30.5 4.8 77 51-133 18-99 (106)
98 1wfh_A Zinc finger (AN1-like) 83.1 1.6 5.4E-05 28.9 4.1 42 15-59 15-56 (64)
99 1wjp_A Zinc finger protein 295 82.6 0.46 1.6E-05 33.7 1.4 77 51-133 17-95 (107)
100 1iml_A CRIP, cysteine rich int 81.2 1.1 3.8E-05 30.0 2.9 45 13-60 25-71 (76)
101 2kmk_A Zinc finger protein GFI 81.1 1.1 3.8E-05 29.5 2.9 73 52-130 3-80 (82)
102 1wfp_A Zinc finger (AN1-like) 79.8 2.4 8.1E-05 28.9 4.1 42 16-60 26-67 (74)
103 1x61_A Thyroid receptor intera 78.8 0.77 2.6E-05 30.4 1.5 36 16-54 34-69 (72)
104 2dlq_A GLI-kruppel family memb 78.8 2.3 7.9E-05 30.3 4.3 78 51-134 8-93 (124)
105 2epa_A Krueppel-like factor 10 78.4 2.3 7.9E-05 27.4 3.8 52 76-129 17-71 (72)
106 1x3c_A Zinc finger protein 292 76.6 1.5 5.3E-05 29.8 2.4 30 104-133 25-55 (73)
107 1m3v_A FLIN4, fusion of the LI 76.6 1.1 3.6E-05 33.3 1.8 44 14-61 31-80 (122)
108 1joc_A EEA1, early endosomal a 76.2 1.2 4.1E-05 33.5 2.0 34 12-48 66-102 (125)
109 2yw8_A RUN and FYVE domain-con 76.2 1.6 5.3E-05 30.2 2.5 35 11-48 15-52 (82)
110 2ct7_A Ring finger protein 31; 75.7 2.2 7.4E-05 29.7 3.1 36 14-49 23-61 (86)
111 2eod_A TNF receptor-associated 75.5 0.87 3E-05 29.2 0.9 32 100-134 4-35 (66)
112 1z2q_A LM5-1; membrane protein 75.1 1.5 5.3E-05 30.4 2.2 34 12-48 18-54 (84)
113 2drp_A Protein (tramtrack DNA- 75.0 3.2 0.00011 26.1 3.7 51 76-132 10-65 (66)
114 2rgt_A Fusion of LIM/homeobox 74.8 1.7 5.7E-05 34.1 2.6 44 14-61 32-76 (169)
115 2jtn_A LIM domain-binding prot 74.4 1.4 4.9E-05 34.9 2.2 44 14-61 86-130 (182)
116 2jrp_A Putative cytoplasmic pr 73.8 1.4 4.9E-05 30.6 1.7 38 16-61 3-42 (81)
117 1x68_A FHL5 protein; four-and- 73.4 2.5 8.6E-05 28.2 2.9 39 14-55 34-73 (76)
118 2dmi_A Teashirt homolog 3; zin 73.2 1.3 4.6E-05 31.5 1.6 42 91-134 64-107 (115)
119 1wff_A Riken cDNA 2810002D23 p 72.8 4.1 0.00014 28.5 3.9 40 16-59 26-67 (85)
120 2dlk_A Novel protein; ZF-C2H2 72.6 4 0.00014 26.6 3.8 54 77-132 8-65 (79)
121 1wfl_A Zinc finger protein 216 72.6 3.3 0.00011 28.2 3.2 41 16-59 26-66 (74)
122 3vhs_A ATPase wrnip1; zinc fin 72.4 2.5 8.6E-05 22.6 2.0 25 74-102 4-28 (29)
123 3lqh_A Histone-lysine N-methyl 72.0 3.7 0.00013 32.9 4.1 45 17-61 4-65 (183)
124 2ctd_A Zinc finger protein 512 71.8 3 0.0001 29.2 3.1 55 73-133 31-88 (96)
125 1x4u_A Zinc finger, FYVE domai 71.7 2.4 8.4E-05 29.3 2.6 36 12-48 11-47 (84)
126 2ct1_A Transcriptional repress 71.7 5.1 0.00017 26.1 4.2 53 76-134 15-72 (77)
127 2jr6_A UPF0434 protein NMA0874 71.1 2.4 8.4E-05 28.4 2.3 29 13-47 6-34 (68)
128 2xjy_A Rhombotin-2; oncoprotei 71.0 1.6 5.6E-05 32.4 1.6 46 13-61 27-77 (131)
129 2eln_A Zinc finger protein 406 70.8 2.4 8.2E-05 24.6 2.0 25 105-129 8-33 (38)
130 2jny_A Uncharacterized BCR; st 70.8 2.4 8.3E-05 28.3 2.2 29 13-47 8-36 (67)
131 3t7l_A Zinc finger FYVE domain 70.2 2.4 8.3E-05 29.8 2.3 36 12-48 17-53 (90)
132 3nw0_A Non-structural maintena 69.8 2.7 9.1E-05 35.2 2.8 44 14-61 179-228 (238)
133 2ebt_A Krueppel-like factor 5; 69.7 7.6 0.00026 26.3 4.9 54 73-130 42-98 (100)
134 1pft_A TFIIB, PFTFIIBN; N-term 69.6 2.2 7.4E-05 26.4 1.7 31 11-47 1-32 (50)
135 2wbs_A Krueppel-like factor 4; 69.5 4.4 0.00015 26.9 3.5 74 52-129 7-87 (89)
136 2ko5_A Ring finger protein Z; 69.2 1.7 5.7E-05 31.1 1.2 41 16-61 29-72 (99)
137 2csh_A Zinc finger protein 297 69.2 3.7 0.00013 28.8 3.2 53 74-132 35-90 (110)
138 1a1h_A QGSR zinc finger peptid 69.1 5 0.00017 26.7 3.7 54 73-132 31-87 (90)
139 2rpc_A Zinc finger protein ZIC 69.0 2.2 7.4E-05 32.1 2.0 81 51-135 26-120 (155)
140 1sp2_A SP1F2; zinc finger, tra 68.7 5.3 0.00018 20.6 3.1 25 105-129 1-26 (31)
141 1rut_X Flinc4, fusion protein 68.7 1.2 4E-05 35.7 0.3 46 13-61 30-80 (188)
142 1vfy_A Phosphatidylinositol-3- 67.1 3.4 0.00012 27.8 2.4 29 17-48 13-44 (73)
143 2jmo_A Parkin; IBR, E3 ligase, 67.0 3.1 0.00011 28.5 2.3 44 14-59 24-76 (80)
144 2i13_A AART; DNA binding, zinc 66.9 4.6 0.00016 31.4 3.6 77 52-134 79-160 (190)
145 1zfd_A SWI5; DNA binding motif 66.2 6.8 0.00023 20.3 3.2 26 105-130 2-28 (32)
146 2cs3_A Protein C14ORF4, MY039 66.0 2.5 8.4E-05 29.3 1.5 34 12-48 12-48 (93)
147 3uk3_C Zinc finger protein 217 65.6 3.6 0.00012 24.9 2.2 45 86-132 10-57 (57)
148 2js4_A UPF0434 protein BB2007; 65.0 3.6 0.00012 27.7 2.2 29 13-47 6-34 (70)
149 1y02_A CARP2, FYVE-ring finger 64.2 3.4 0.00012 30.9 2.1 34 12-48 16-52 (120)
150 2jp9_A Wilms tumor 1; DNA bind 63.8 6.3 0.00021 27.7 3.5 50 75-128 65-117 (119)
151 2hf1_A Tetraacyldisaccharide-1 63.6 3.3 0.00011 27.7 1.8 28 14-47 7-34 (68)
152 2d8z_A Four and A half LIM dom 63.4 3 0.0001 27.2 1.6 31 16-49 32-62 (70)
153 1a7i_A QCRP2 (LIM1); LIM domai 63.4 2.6 9.1E-05 28.4 1.3 41 14-57 33-74 (81)
154 1llm_C Chimera of ZIF23-GCN4; 63.0 0.4 1.4E-05 32.8 -3.1 76 52-133 5-84 (88)
155 2jp9_A Wilms tumor 1; DNA bind 62.9 7.1 0.00024 27.4 3.7 81 51-135 7-94 (119)
156 2lt7_A Transcriptional regulat 62.6 4 0.00014 30.5 2.3 76 52-133 24-104 (133)
157 1b8t_A Protein (CRP1); LIM dom 62.1 4.3 0.00015 32.3 2.6 42 16-60 143-185 (192)
158 2ebt_A Krueppel-like factor 5; 61.8 9.5 0.00032 25.8 4.1 56 76-133 15-73 (100)
159 1x6e_A Zinc finger protein 24; 61.7 6.8 0.00023 25.1 3.1 53 76-134 14-69 (72)
160 2i13_A AART; DNA binding, zinc 61.6 5.8 0.0002 30.8 3.2 79 51-135 50-133 (190)
161 2cur_A Skeletal muscle LIM-pro 61.4 3.8 0.00013 26.7 1.8 30 16-48 32-61 (69)
162 1ubd_C Protein (YY1 zinc finge 61.3 12 0.00039 26.6 4.7 79 51-134 6-91 (124)
163 2d9h_A Zinc finger protein 692 61.2 6.1 0.00021 25.7 2.9 54 76-135 7-66 (78)
164 1wfk_A Zinc finger, FYVE domai 61.1 5.9 0.0002 27.7 2.8 32 14-48 8-42 (88)
165 1tf6_A Protein (transcription 61.0 6.5 0.00022 30.5 3.4 82 51-134 43-133 (190)
166 1vyx_A ORF K3, K3RING; zinc-bi 60.7 2.7 9.4E-05 27.1 0.9 46 13-61 4-58 (60)
167 1x5w_A Zinc finger protein 64, 60.4 8.7 0.0003 24.3 3.5 53 76-134 9-64 (70)
168 1dvp_A HRS, hepatocyte growth 59.6 4.9 0.00017 32.9 2.5 30 16-48 162-194 (220)
169 2vrw_B P95VAV, VAV1, proto-onc 59.2 8.7 0.0003 34.1 4.3 44 11-55 353-397 (406)
170 2l7x_A Envelope glycoprotein; 59.0 5.4 0.00018 26.7 2.1 36 90-129 16-51 (77)
171 2lv2_A Insulinoma-associated p 58.7 12 0.0004 25.7 4.1 51 77-133 29-82 (85)
172 1wyh_A SLIM 2, skeletal muscle 58.6 4.3 0.00015 26.5 1.7 30 16-48 34-63 (72)
173 1tf6_A Protein (transcription 58.2 8.1 0.00028 29.9 3.5 79 52-132 74-161 (190)
174 1x4l_A Skeletal muscle LIM-pro 57.9 3.4 0.00012 27.1 1.1 31 16-49 36-66 (72)
175 2pk7_A Uncharacterized protein 57.6 3.6 0.00012 27.6 1.1 29 13-47 6-34 (69)
176 1x4k_A Skeletal muscle LIM-pro 56.7 3.9 0.00013 26.7 1.2 31 16-49 34-64 (72)
177 2adr_A ADR1; transcription reg 56.4 14 0.0005 22.3 3.9 47 86-134 8-57 (60)
178 2vy4_A U11/U12 small nuclear r 56.2 6 0.0002 23.1 1.8 27 76-105 5-31 (37)
179 2dar_A PDZ and LIM domain prot 56.1 5.2 0.00018 27.6 1.8 9 17-25 27-35 (90)
180 2gqj_A Zinc finger protein KIA 56.1 4.5 0.00015 28.1 1.5 55 75-135 23-82 (98)
181 2cu8_A Cysteine-rich protein 2 55.7 4.7 0.00016 26.8 1.5 10 16-25 37-46 (76)
182 1nyp_A Pinch protein; LIM doma 55.5 3.4 0.00012 26.6 0.7 9 17-25 7-15 (66)
183 2k2d_A Ring finger and CHY zin 54.5 4.3 0.00015 27.9 1.1 30 30-59 28-64 (79)
184 2cor_A Pinch protein; LIM doma 53.9 6.5 0.00022 26.5 2.0 12 37-48 59-70 (79)
185 3pwf_A Rubrerythrin; non heme 53.7 7.8 0.00027 30.6 2.7 28 29-60 135-163 (170)
186 2ehe_A Four and A half LIM dom 53.6 6.9 0.00024 26.3 2.1 13 36-48 61-73 (82)
187 3zyq_A Hepatocyte growth facto 53.2 7.3 0.00025 32.1 2.6 29 17-48 166-197 (226)
188 2d8x_A Protein pinch; LIM doma 51.3 4.2 0.00014 26.5 0.6 30 16-48 32-61 (70)
189 1b8t_A Protein (CRP1); LIM dom 50.9 5.4 0.00018 31.8 1.4 44 13-59 32-76 (192)
190 2iyb_E Testin, TESS, TES; LIM 50.8 4.2 0.00014 26.2 0.6 29 16-47 33-62 (65)
191 1wjv_A Cell growth regulating 50.8 5.7 0.0002 27.3 1.2 47 76-128 10-57 (79)
192 1bbo_A Human enhancer-binding 49.6 20 0.00069 21.2 3.7 45 86-132 7-54 (57)
193 2egq_A FHL1 protein; LIM domai 48.8 3.5 0.00012 27.4 -0.1 9 17-25 17-25 (77)
194 1wig_A KIAA1808 protein; LIM d 48.7 5.6 0.00019 26.3 0.9 31 15-49 31-63 (73)
195 3m62_A Ubiquitin conjugation f 48.4 5.5 0.00019 39.9 1.2 59 13-75 889-954 (968)
196 2ab3_A ZNF29; zinc finger prot 47.0 9.3 0.00032 18.9 1.5 24 106-129 2-26 (29)
197 2wbt_A B-129; zinc finger; 2.7 46.9 26 0.0009 24.9 4.6 54 74-134 72-127 (129)
198 1x3h_A Leupaxin; paxillin fami 46.0 9.8 0.00034 25.3 1.9 9 17-25 17-25 (80)
199 2dj7_A Actin-binding LIM prote 45.4 12 0.00041 25.2 2.2 9 17-25 17-25 (80)
200 2cuq_A Four and A half LIM dom 45.3 11 0.00037 25.1 2.0 9 17-25 17-25 (80)
201 2fiy_A Protein FDHE homolog; F 44.6 8.9 0.0003 33.3 1.8 42 15-59 182-231 (309)
202 2dlo_A Thyroid receptor-intera 43.8 10 0.00036 25.3 1.8 9 17-25 17-25 (81)
203 1bhi_A CRE-BP1, ATF-2; CRE bin 43.6 12 0.00042 20.2 1.8 26 105-130 5-31 (38)
204 2cot_A Zinc finger protein 435 43.5 23 0.00079 22.7 3.5 45 86-132 24-71 (77)
205 1x4w_A Hypothetical protein FL 43.4 6.7 0.00023 26.1 0.6 42 15-59 15-59 (67)
206 1g47_A Pinch protein; LIM doma 43.0 5.6 0.00019 26.3 0.2 10 16-25 12-21 (77)
207 4fo9_A E3 SUMO-protein ligase 42.5 12 0.00042 33.1 2.4 56 16-74 216-281 (360)
208 1va1_A Transcription factor SP 42.4 12 0.0004 20.3 1.6 25 105-129 7-32 (37)
209 1zbd_B Rabphilin-3A; G protein 42.4 17 0.00057 27.5 2.9 36 14-49 54-90 (134)
210 1x63_A Skeletal muscle LIM-pro 42.0 8.4 0.00029 25.8 1.0 9 17-25 17-25 (82)
211 1ncs_A Peptide M30F, transcrip 41.9 7.5 0.00025 22.7 0.7 26 104-129 16-42 (47)
212 1f2i_G Fusion of N-terminal 17 41.7 20 0.0007 22.6 2.9 50 76-129 19-71 (73)
213 1weo_A Cellulose synthase, cat 41.3 9.4 0.00032 26.9 1.1 50 12-61 13-69 (93)
214 2d8v_A Zinc finger FYVE domain 41.2 11 0.00039 24.9 1.5 30 14-49 7-38 (67)
215 2zet_C Melanophilin; complex, 41.2 17 0.00058 28.2 2.8 44 15-58 68-116 (153)
216 1klr_A Zinc finger Y-chromosom 41.1 19 0.00065 17.6 2.3 25 106-132 2-27 (30)
217 1dx8_A Rubredoxin; electron tr 40.4 16 0.00055 24.4 2.2 17 9-25 1-17 (70)
218 3i2d_A E3 SUMO-protein ligase 40.4 13 0.00045 33.1 2.2 56 16-74 250-315 (371)
219 1paa_A Yeast transcription fac 39.2 27 0.00092 17.2 2.7 25 106-132 2-27 (30)
220 1ard_A Yeast transcription fac 38.1 27 0.00092 16.9 2.6 23 106-130 2-25 (29)
221 2m0e_A Zinc finger and BTB dom 38.1 20 0.00067 17.4 2.0 23 106-130 2-25 (29)
222 2co8_A NEDD9 interacting prote 38.1 16 0.00054 24.6 1.9 30 16-48 43-74 (82)
223 2kpi_A Uncharacterized protein 37.7 17 0.00057 23.2 1.8 26 13-46 8-35 (56)
224 3f6q_B LIM and senescent cell 37.1 6.6 0.00022 25.4 -0.2 10 16-25 12-21 (72)
225 1x6h_A Transcriptional repress 36.7 41 0.0014 21.6 4.0 54 76-135 15-75 (86)
226 4gzn_C ZFP-57, zinc finger pro 36.7 37 0.0013 21.3 3.5 49 77-132 5-56 (60)
227 2gmg_A Hypothetical protein PF 36.7 11 0.00038 27.4 1.0 23 34-60 69-94 (105)
228 6rxn_A Rubredoxin; electron tr 36.4 34 0.0012 20.8 3.0 13 13-25 2-14 (46)
229 2kvf_A Zinc finger and BTB dom 36.2 20 0.00069 17.5 1.8 23 105-129 2-25 (28)
230 1p7a_A BF3, BKLF, kruppel-like 35.8 36 0.0012 17.8 3.0 24 105-130 10-34 (37)
231 3mpx_A FYVE, rhogef and PH dom 35.8 7.7 0.00026 34.7 0.0 34 12-48 372-408 (434)
232 1dl6_A Transcription factor II 35.7 18 0.00061 23.1 1.8 29 14-48 10-39 (58)
233 2lce_A B-cell lymphoma 6 prote 35.7 32 0.0011 21.8 3.1 45 86-132 23-70 (74)
234 2d8y_A Eplin protein; LIM doma 35.6 11 0.00039 25.8 0.9 12 37-48 61-72 (91)
235 1flk_A TNF receptor associated 35.4 11 0.00037 31.0 0.9 26 76-101 9-39 (228)
236 1rik_A E6APC1 peptide; E6-bind 35.1 22 0.00077 17.3 1.9 23 106-130 2-25 (29)
237 1znf_A 31ST zinc finger from X 34.7 33 0.0011 16.3 2.5 22 106-129 1-23 (27)
238 3mjh_B Early endosome antigen 34.0 21 0.00071 20.4 1.6 26 107-134 6-32 (34)
239 1x64_A Alpha-actinin-2 associa 33.9 11 0.00038 25.8 0.6 10 16-25 26-35 (89)
240 1wfe_A Riken cDNA 2310008M20 p 33.3 35 0.0012 23.7 3.1 38 14-55 24-64 (86)
241 1lpv_A Doublesex protein; tran 32.7 7.2 0.00025 24.6 -0.5 29 86-116 13-41 (52)
242 1srk_A Zinc finger protein ZFP 31.1 34 0.0012 17.7 2.3 25 105-131 6-31 (35)
243 1yuz_A Nigerythrin; rubrythrin 30.9 30 0.001 27.9 2.8 25 31-59 170-195 (202)
244 1lko_A Rubrerythrin all-iron(I 30.7 22 0.00075 28.4 1.9 25 32-59 155-180 (191)
245 1zw8_A Zinc-responsive transcr 30.4 23 0.0008 22.7 1.7 52 78-131 3-64 (64)
246 2kvh_A Zinc finger and BTB dom 30.4 25 0.00085 17.0 1.5 23 105-129 2-25 (27)
247 2elx_A Zinc finger protein 406 30.4 31 0.0011 17.8 2.0 25 105-131 6-31 (35)
248 2k9h_A Glycoprotein; hantaviru 30.3 49 0.0017 21.0 3.0 35 91-129 15-51 (57)
249 1rim_A E6APC2 peptide; E6-bind 29.9 43 0.0015 17.3 2.6 24 105-130 1-25 (33)
250 2m0d_A Zinc finger and BTB dom 29.8 34 0.0012 16.6 2.1 24 105-130 2-26 (30)
251 1j2o_A FLIN2, fusion of rhombo 29.6 16 0.00056 26.2 0.9 39 15-56 30-71 (114)
252 3ky9_A Proto-oncogene VAV; cal 29.4 38 0.0013 31.6 3.7 41 13-54 527-568 (587)
253 1x62_A C-terminal LIM domain p 28.6 7.3 0.00025 26.1 -1.2 11 15-25 15-25 (79)
254 1x6a_A LIMK-2, LIM domain kina 28.4 26 0.00089 23.2 1.7 9 17-25 17-25 (81)
255 2epx_A Zinc finger protein 28 27.8 51 0.0018 18.3 2.9 26 105-132 11-37 (47)
256 2ytb_A Zinc finger protein 32; 27.7 58 0.002 17.6 3.0 25 105-131 10-35 (42)
257 2e72_A POGO transposable eleme 27.5 47 0.0016 20.5 2.5 28 106-135 12-40 (49)
258 2jvx_A NF-kappa-B essential mo 27.4 24 0.00083 19.2 1.1 11 15-25 3-13 (28)
259 2a25_A Ubiquitin ligase SIAH1; 27.3 31 0.0011 27.5 2.3 46 56-101 16-61 (193)
260 2eos_A B-cell lymphoma 6 prote 27.2 58 0.002 17.7 3.0 25 105-131 10-35 (42)
261 2m0f_A Zinc finger and BTB dom 27.0 28 0.00097 16.8 1.4 22 106-129 2-24 (29)
262 2enf_A Zinc finger protein 347 26.9 36 0.0012 19.1 2.0 25 105-131 11-36 (46)
263 2eon_A ZFP-95, zinc finger pro 26.5 56 0.0019 18.3 2.9 24 105-130 11-35 (46)
264 2ytn_A Zinc finger protein 347 26.3 67 0.0023 17.8 3.2 25 105-131 11-36 (46)
265 2ent_A Krueppel-like factor 15 26.2 48 0.0016 18.6 2.5 25 105-129 11-36 (48)
266 2eq2_A Zinc finger protein 347 26.2 53 0.0018 18.3 2.7 25 105-131 11-36 (46)
267 2elt_A Zinc finger protein 406 26.0 36 0.0012 17.7 1.8 23 105-129 8-31 (36)
268 2elr_A Zinc finger protein 406 25.9 53 0.0018 16.9 2.5 24 105-130 8-32 (36)
269 2elq_A Zinc finger protein 406 25.8 38 0.0013 17.7 1.9 23 105-129 8-31 (36)
270 2enh_A Zinc finger protein 28 25.5 46 0.0016 18.6 2.3 25 105-131 11-36 (46)
271 2els_A Zinc finger protein 406 25.2 38 0.0013 17.7 1.8 23 105-129 8-31 (36)
272 2kvg_A Zinc finger and BTB dom 25.1 25 0.00086 17.1 0.9 23 105-129 2-25 (27)
273 2lvu_A Zinc finger and BTB dom 30.8 15 0.00052 17.7 0.0 22 106-129 2-24 (26)
274 2kdx_A HYPA, hydrogenase/ureas 24.8 52 0.0018 23.9 3.0 10 51-60 90-100 (119)
275 2ept_A Zinc finger protein 32; 24.5 53 0.0018 17.7 2.4 25 105-131 9-34 (41)
276 2elp_A Zinc finger protein 406 24.4 29 0.00099 18.3 1.2 23 105-129 8-32 (37)
277 2elo_A Zinc finger protein 406 24.1 33 0.0011 18.0 1.4 25 105-131 8-33 (37)
278 2epz_A Zinc finger protein 28 24.0 72 0.0025 17.7 3.0 25 105-131 11-36 (46)
279 1d4u_A Nucleotide excision rep 23.9 20 0.00068 26.3 0.4 33 13-48 3-35 (111)
280 2l3k_A Rhombotin-2, linker, LI 23.9 43 0.0015 24.2 2.4 42 14-58 35-78 (123)
281 2ytr_A Zinc finger protein 347 23.8 71 0.0024 17.6 3.0 25 105-131 11-36 (46)
282 2yth_A Zinc finger protein 224 23.6 83 0.0028 17.4 3.2 24 105-130 11-35 (46)
283 2lo3_A SAGA-associated factor 23.5 34 0.0012 20.5 1.3 20 113-132 22-41 (44)
284 2l4z_A DNA endonuclease RBBP8, 23.4 17 0.00058 26.7 -0.0 11 15-25 61-71 (123)
285 2ep1_A Zinc finger protein 484 23.4 79 0.0027 17.4 3.1 25 105-131 11-36 (46)
286 2yti_A Zinc finger protein 347 23.2 72 0.0025 17.7 2.9 24 105-130 11-35 (46)
287 2en7_A Zinc finger protein 268 23.1 79 0.0027 17.2 3.0 24 105-130 11-35 (44)
288 2elz_A Zinc finger protein 224 23.1 80 0.0027 17.5 3.1 25 105-131 11-36 (46)
289 2el5_A Zinc finger protein 268 22.9 60 0.0021 17.5 2.4 25 105-131 9-34 (42)
290 2eq1_A Zinc finger protein 347 22.7 76 0.0026 17.5 3.0 24 105-130 11-35 (46)
291 2emg_A Zinc finger protein 484 22.7 78 0.0027 17.5 3.0 25 105-131 11-36 (46)
292 2yte_A Zinc finger protein 473 22.7 76 0.0026 17.0 2.9 24 105-130 9-33 (42)
293 2eov_A Zinc finger protein 484 22.6 68 0.0023 17.7 2.7 25 105-131 11-36 (46)
294 1faq_A RAF-1; transferase, ser 22.6 66 0.0023 19.3 2.7 34 16-53 15-49 (52)
295 2em0_A Zinc finger protein 224 22.5 85 0.0029 17.3 3.2 24 105-130 11-35 (46)
296 2eom_A ZFP-95, zinc finger pro 22.4 44 0.0015 18.8 1.8 25 105-131 11-36 (46)
297 2enn_A NPKC-theta, protein kin 22.4 81 0.0028 20.9 3.4 39 16-54 35-74 (77)
298 2elv_A Zinc finger protein 406 22.3 53 0.0018 17.0 2.0 23 105-129 8-31 (36)
299 2lvt_A Zinc finger and BTB dom 27.7 19 0.00064 17.8 0.0 22 106-129 2-24 (29)
300 2ytq_A Zinc finger protein 268 22.1 78 0.0027 17.5 2.9 24 105-130 11-35 (46)
301 2lv9_A Histone-lysine N-methyl 22.0 87 0.003 21.9 3.6 44 13-59 26-76 (98)
302 2eoh_A Zinc finger protein 28 21.9 76 0.0026 17.6 2.8 24 105-130 11-35 (46)
303 2eop_A Zinc finger protein 268 21.7 80 0.0028 17.4 2.9 24 105-130 11-35 (46)
304 2eoq_A Zinc finger protein 224 21.6 79 0.0027 17.5 2.8 25 105-131 11-36 (46)
305 1gh9_A 8.3 kDa protein (gene M 21.4 66 0.0023 21.4 2.7 9 16-25 5-13 (71)
306 1x4v_A Hypothetical protein LO 21.4 27 0.00093 22.8 0.7 36 16-55 13-51 (63)
307 2elm_A Zinc finger protein 406 21.2 45 0.0015 17.7 1.6 26 105-132 8-34 (37)
308 2ely_A Zinc finger protein 224 21.0 75 0.0026 17.6 2.7 25 105-131 11-36 (46)
309 2kn9_A Rubredoxin; metalloprot 21.0 68 0.0023 22.0 2.7 14 12-25 24-37 (81)
310 2yts_A Zinc finger protein 484 20.9 46 0.0016 18.5 1.7 24 105-130 11-35 (46)
311 3mhs_C SAGA-associated factor 20.9 48 0.0017 23.6 1.9 28 72-103 66-93 (99)
312 2eq4_A Zinc finger protein 224 20.7 48 0.0016 18.4 1.7 25 105-131 11-36 (46)
313 2k5r_A Uncharacterized protein 20.5 32 0.0011 24.5 1.0 13 13-25 6-18 (97)
314 2eme_A Zinc finger protein 473 20.3 71 0.0024 17.6 2.5 25 105-131 11-36 (46)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=4e-36 Score=250.79 Aligned_cols=178 Identities=19% Similarity=0.346 Sum_probs=106.1
Q ss_pred heeeeEeeccccCCCCceeeccchHHhHhhhCcccCcCCCCCC--CCcccChhhHhhHhhcccCCCCeeEEeCcEEEEEE
Q 048313 71 VLESIQVTCENEDHGCKEKMSYSKKYDHGKACHHARCSCPLAA--CNFVGSFNQIYQHFRGVHKHAAEEFVYDKVLRITL 148 (252)
Q Consensus 71 ~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~p~~CP~~g--C~~~g~~~~L~~Hl~~~H~~~~~~~~y~~~~~~~l 148 (252)
+++++++||+|+.+||++.++|.++.+||++|.|+|+.||.+| |+|+|+.++|..|++.+|+|.... .......+..
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~-~g~~i~f~~~ 79 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTL-QGEDIVFLAT 79 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEE-ESSEEEEEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCccee-cCceEEEEec
Confidence 4688999999999999999999999999999999999999987 999999999999999999985421 1111111222
Q ss_pred ec----cCcEEEEEEeeCCcEEEEecC--CCCcc---cEEEEEeecCC-CCCCeEEEEEEeeCCCeEEEeeeeeeecccc
Q 048313 149 SV----HHDLIFLQEEKNGDLFILNNS--TEPHG---YRISVNCIAPP-CKGGIVYSIVAKSGGAAYKFNSCTKSIQNWD 218 (252)
Q Consensus 149 ~~----~~~~~vl~~~~~~~lFll~~~--~~~~g---~~vsv~cIgp~-~a~~f~Y~l~~~~~~~~l~~~s~~~~i~~~~ 218 (252)
++ +.+|++ +.+++|+.|+|... ..+.| .+++|+||||. +|++|+|+|++.+++++|+||++++++++..
T Consensus 80 ~~~l~~~~~~~~-v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~ 158 (193)
T 2a25_A 80 DINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGI 158 (193)
T ss_dssp CCC----CEEEE-EEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCS
T ss_pred ccccccceeEEE-EEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcc
Confidence 22 235654 44678888988753 33445 47899999999 8999999999999999999999999987522
Q ss_pred cCCCCCcceeEEcCcc---cCCCCceeEEEEEecc
Q 048313 219 ENNPPSVASLLVPSDF---FGSYGQLNLEVRIQHP 250 (252)
Q Consensus 219 ~~~~~~~~fL~VP~~~---l~~~~~l~l~V~I~~~ 250 (252)
.+..++.+||+||..+ |+++|+|+|+|+|++.
T Consensus 159 ~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~~ 193 (193)
T 2a25_A 159 ATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 193 (193)
T ss_dssp HHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEEC
T ss_pred cccccCCCEEEEcHHHHHhhcCCCeEEEEEEEEeC
Confidence 2236789999999754 6777899999999874
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.4e-23 Score=169.90 Aligned_cols=120 Identities=24% Similarity=0.335 Sum_probs=107.8
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCcc---cchhHHHhheeeeEeeccccCCCC
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIGH---SRSIAMEKVLESIQVTCENEDHGC 86 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~~~~l~v~C~~~~~GC 86 (252)
+.|.||||.+++ .+|+. +.|||+||..|+.++ ...||.||.++.. .++.++++++++++|.|+|. ||
T Consensus 17 ~~~~C~IC~~~~---~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~--GC 90 (170)
T 3hcs_A 17 SKYECPICLMAL---REAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GC 90 (170)
T ss_dssp GGGBCTTTCSBC---SSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCST--TC
T ss_pred CCCCCCCCChhh---cCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCC--CC
Confidence 568999999999 99964 799999999999886 2489999999864 47889999999999999985 99
Q ss_pred ceeeccchHHhHhhhCcccCcCCCCCCCCcccChhhHhhHhhcccCCCCeeEEeC
Q 048313 87 KEKMSYSKKYDHGKACHHARCSCPLAACNFVGSFNQIYQHFRGVHKHAAEEFVYD 141 (252)
Q Consensus 87 ~~~~~~~~~~~H~~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~ 141 (252)
++.+++.++++|+++|+|+++.|| +|++.+.+.+|..|+...+..+.....|-
T Consensus 91 ~~~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~C 143 (170)
T 3hcs_A 91 LHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNC 143 (170)
T ss_dssp CCEEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTTT
T ss_pred CceecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCCC
Confidence 999999999999999999999998 89999999999999998888877666553
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.62 E-value=1.2e-16 Score=122.56 Aligned_cols=87 Identities=26% Similarity=0.453 Sum_probs=75.5
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhc----CCCCCCCcCCcc---cchhHHHhheeeeEeeccccCCCC
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM----NKCPSCRLPIGH---SRSIAMEKVLESIQVTCENEDHGC 86 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~----~~CP~Cr~~~~~---~r~~~le~~~~~l~v~C~~~~~GC 86 (252)
+.+.|+||.+.+ ..|+. ..|||+||..|+.++. ..||.||.++.. .++..++++++++++.|+| .||
T Consensus 17 ~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC 90 (118)
T 3hct_A 17 SKYECPICLMAL---REAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGC 90 (118)
T ss_dssp GGGBCTTTCSBC---SSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTC
T ss_pred CCCCCCcCChhh---cCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCC
Confidence 458999999999 99976 5899999999998852 489999999863 3788999999999999998 599
Q ss_pred ceeeccchHHhHhhhCcccC
Q 048313 87 KEKMSYSKKYDHGKACHHAR 106 (252)
Q Consensus 87 ~~~~~~~~~~~H~~~C~~~p 106 (252)
+|.+++.++++|+++|.+..
T Consensus 91 ~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 91 LHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp CCEEEGGGSGGGTSSSCC--
T ss_pred CCEEeeHHHHHHHHHchhhh
Confidence 99999999999999987753
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.60 E-value=3e-16 Score=119.83 Aligned_cols=86 Identities=26% Similarity=0.476 Sum_probs=75.6
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCcc----cchhHHHhheeeeEeeccccCCC
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIGH----SRSIAMEKVLESIQVTCENEDHG 85 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~~~~l~v~C~~~~~G 85 (252)
+.+.||||.+++ ..|+. ..|||.||..|+.++ ...||.||.++.. ..+..+.++++++++.|+|. |
T Consensus 22 ~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--g 95 (116)
T 1rmd_A 22 KSISCQICEHIL---ADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--D 95 (116)
T ss_dssp HHTBCTTTCSBC---SSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--T
T ss_pred CCCCCCCCCcHh---cCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--C
Confidence 357899999999 99976 589999999999875 3589999999752 34678999999999999997 9
Q ss_pred CceeeccchHHhHhhhCccc
Q 048313 86 CKEKMSYSKKYDHGKACHHA 105 (252)
Q Consensus 86 C~~~~~~~~~~~H~~~C~~~ 105 (252)
|++.+++.++++|+++|.+.
T Consensus 96 C~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 96 CNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp CCCEEEHHHHHHHHHTSCCC
T ss_pred CcchhhHhHHHHHHHHhhcc
Confidence 99999999999999999874
No 5
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.59 E-value=8.4e-17 Score=127.40 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=73.5
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhc----CCCCCCCcCCc------------ccchhHHHhheeeeEe
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM----NKCPSCRLPIG------------HSRSIAMEKVLESIQV 77 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~----~~CP~Cr~~~~------------~~r~~~le~~~~~l~v 77 (252)
+.|.||||.+++ ..|+ +..|||+||..|+.++. ..||.||.++. ..++.++++.|.++++
T Consensus 30 ~~~~C~IC~~~~---~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 30 AKYLCSACRNVL---RRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GGGBCTTTCSBC---SSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred cCcCCCCCChhh---cCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence 568999999999 9995 46999999999999862 37999999752 1267889999999999
Q ss_pred eccccCCCCceeeccchHHh-HhhhCcc
Q 048313 78 TCENEDHGCKEKMSYSKKYD-HGKACHH 104 (252)
Q Consensus 78 ~C~~~~~GC~~~~~~~~~~~-H~~~C~~ 104 (252)
.|+| .||.|.+.+.++++ |+..|.-
T Consensus 106 ~Cpn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 106 VCPS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp ECCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred ccCC--CCCCCEeEHHHHHHHHHHHhHH
Confidence 9999 59999999999998 9988753
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.89 E-value=2.5e-10 Score=80.48 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=48.2
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCc---ccchhHHHhheeee
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
.+.+.||||.+++ .+|+.. .|||+||..|+.++ ...||.||.++. ..+|.+++++++.+
T Consensus 6 ~~~~~C~IC~~~~---~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELM---KDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCC---SSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccc---cCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 4679999999999 999875 89999999999875 357999999875 34677777776654
No 7
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.84 E-value=6.3e-10 Score=80.85 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=50.6
Q ss_pred CCeeeecCCcccccCCCCceEEcc-CCceecccChhhhc-----CCCCCCCcCCc----ccchhHHHhheeeeEeec
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELM-----NKCPSCRLPIG----HSRSIAMEKVLESIQVTC 79 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~-----~~CP~Cr~~~~----~~r~~~le~~~~~l~v~C 79 (252)
.+.+.||||.+.+ ..|+.. . |||.||..|+.++. ..||.||.++. ..+|..++++++.++-.-
T Consensus 11 ~~~~~C~IC~~~~---~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 11 PDELLCLICKDIM---TDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp CTTTEETTTTEEC---SSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCChhh---cCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 3568999999999 999865 7 99999999998751 48999999862 457888888887665443
No 8
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.77 E-value=9.7e-10 Score=77.39 Aligned_cols=55 Identities=16% Similarity=0.452 Sum_probs=43.6
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh----------cCCCCCCCcCCc---ccchhHHHhhe
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----------MNKCPSCRLPIG---HSRSIAMEKVL 72 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----------~~~CP~Cr~~~~---~~r~~~le~~~ 72 (252)
+.+.|+||.+.+ ..|+. ..|||.||..|+.++ ...||.||.++. ..+|..+++++
T Consensus 11 ~~~~C~IC~~~~---~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 11 EEVTCPICLELL---TEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCEETTTTEEC---SSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred cCCCCcCCCccc---CCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 568999999999 89976 489999999999864 247999999875 23555555554
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.76 E-value=7.9e-10 Score=81.56 Aligned_cols=60 Identities=20% Similarity=0.522 Sum_probs=48.8
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc---ccchhHHHhheeeeE
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG---HSRSIAMEKVLESIQ 76 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~---~~r~~~le~~~~~l~ 76 (252)
+.+.|+||.+.+ ..|+..-.|||.||..|+.++ ...||.||.++. ..+|..++++++.++
T Consensus 21 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 21 DLLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 357899999999 999765479999999999886 368999999886 456888888776543
No 10
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.9e-09 Score=76.67 Aligned_cols=55 Identities=18% Similarity=0.454 Sum_probs=44.0
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---------cCCCCCCCcCCc---ccchhHHHhhe
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---------MNKCPSCRLPIG---HSRSIAMEKVL 72 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---------~~~CP~Cr~~~~---~~r~~~le~~~ 72 (252)
+.+.|+||.+.+ ..|+.. .|||.||..|+.++ ...||.||..+. ..+|..+++++
T Consensus 18 ~~~~C~IC~~~~---~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 18 EEVTCPICLELL---TQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCTTTCSCC---SSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred CCCCCCCCCccc---CCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 568999999999 889764 89999999999874 468999999876 23566665554
No 11
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.72 E-value=2.2e-09 Score=77.26 Aligned_cols=59 Identities=7% Similarity=-0.029 Sum_probs=49.5
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc---ccchhHHHhheeee
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
++.|.||||.++| ++|+.. .|||+||..|+.++ ...||.|+.++. ..+|.++.++++.+
T Consensus 12 p~~~~CpI~~~~m---~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 12 PDEFRDPLMDTLM---TDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CTTTBCTTTCSBC---SSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred chheECcccCchh---cCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 4679999999999 999875 79999999999885 478999999875 45788888877654
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.72 E-value=2.1e-09 Score=84.16 Aligned_cols=44 Identities=32% Similarity=0.609 Sum_probs=38.3
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+.+.|+||.+.+ ..|+.. +|||.||..|+.++ ...||.||.++.
T Consensus 52 ~~~~C~iC~~~~---~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYF---IEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBC---SSEEEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCccc---CCceEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 347899999999 999865 89999999999886 368999999985
No 13
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.71 E-value=3e-09 Score=79.67 Aligned_cols=59 Identities=15% Similarity=0.419 Sum_probs=47.6
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCcc-------cchhHHHhheeee
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIGH-------SRSIAMEKVLESI 75 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~~-------~r~~~le~~~~~l 75 (252)
+.+.|+||.+.+ ..|+....|||.||..|+.++ ...||.||..+.. .+|..++++++.+
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp GGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred CcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 568999999999 999875589999999999886 3689999998753 3566777776643
No 14
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.1e-09 Score=70.28 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=40.0
Q ss_pred eCCeeeecCCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcCCc
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLPIG 61 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~~~ 61 (252)
+.+.+.|+||.+.+ ..|+. -.|||.||..|+.++...||.||..+.
T Consensus 3 e~~~~~C~IC~~~~---~~p~~-l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEA---KCPKL-LPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSC---BCCSC-STTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred cccCCCceEeCCcc---CCeEE-cCCCCcccHHHHccCCCCCCcCCcEee
Confidence 45678999999999 88976 479999999999887679999999875
No 15
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.70 E-value=3.2e-09 Score=78.76 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=49.9
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc---ccchhHHHhheeee
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
++.|.||||.++| ++|+.. .|||+||..|+.++ ...||.|+.++. ..+|..+.++++.+
T Consensus 27 p~~~~CpI~~~~m---~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred cHhhCCcCccCcc---cCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 4679999999999 999876 79999999999986 368999999975 45788888877654
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.70 E-value=2.3e-09 Score=82.31 Aligned_cols=57 Identities=21% Similarity=0.503 Sum_probs=46.5
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhc----CCCCCCCcCCcc----cchhHHHhheee
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM----NKCPSCRLPIGH----SRSIAMEKVLES 74 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~----~~CP~Cr~~~~~----~r~~~le~~~~~ 74 (252)
+.+.||||.+.+ ..|+.. .|||.||..|+.++. ..||.||.++.. .+|..+.++++.
T Consensus 51 ~~~~C~IC~~~~---~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 51 ETFQCICCQELV---FRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HHTBCTTTSSBC---SSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred cCCCCCcCChHH---cCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 457899999999 999764 899999999998752 389999999853 467777777654
No 17
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=4e-09 Score=80.20 Aligned_cols=59 Identities=20% Similarity=0.441 Sum_probs=47.9
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhc-CCCCCCCcCCc---ccchhHHHhheeee
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM-NKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~-~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
+.+.||||.+.+ ..|+....|||.||..|+.++. ..||.||.++. ..+|..+.++++.+
T Consensus 21 ~~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 21 KLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HTTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred hCCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence 458899999999 9998755899999999999864 58999999874 34677777776643
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.69 E-value=2e-09 Score=76.54 Aligned_cols=55 Identities=20% Similarity=0.491 Sum_probs=43.9
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---------cCCCCCCCcCCc---ccchhHHHhhe
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---------MNKCPSCRLPIG---HSRSIAMEKVL 72 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---------~~~CP~Cr~~~~---~~r~~~le~~~ 72 (252)
+.+.|+||.+.+ ..|+. ..|||.||..|+.++ ...||.||.++. ..+|..+++++
T Consensus 18 ~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 18 EEVTCPICLELL---KEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp TTTSCTTTCSCC---SSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred cCCCCcCCChhh---Cccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 468899999999 99975 589999999999874 357999999875 23566666554
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=4.5e-09 Score=74.55 Aligned_cols=57 Identities=25% Similarity=0.533 Sum_probs=44.0
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc--ccchhHHHhhee
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG--HSRSIAMEKVLE 73 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~--~~r~~~le~~~~ 73 (252)
.+.+.|+||.+.+ ..|+. ..|||.||..|+.++ ...||+||.++. ...+..+.+.+.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVV-TKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred CCCCCCcCCCchh---cCeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 3568999999999 99976 589999999999886 368999999875 234444444433
No 20
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.68 E-value=3.7e-09 Score=78.12 Aligned_cols=60 Identities=10% Similarity=-0.045 Sum_probs=50.3
Q ss_pred CCeeeecCCcccccCCCCceEEccCC-ceecccChhhh---cCCCCCCCcCCc---ccchhHHHhheeeeE
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNG-HIVCNRCCIEL---MNKCPSCRLPIG---HSRSIAMEKVLESIQ 76 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~G-H~~C~~C~~~~---~~~CP~Cr~~~~---~~r~~~le~~~~~l~ 76 (252)
++.|.||||.++| ++||.. .|| |+||..|+.++ ...||.|+.++. ..+|..++++|+.+.
T Consensus 20 p~~~~CpI~~~~m---~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 20 CDEFLDPIMSTLM---CDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CTTTBCTTTCSBC---SSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred cHhcCCcCccccc---cCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 4679999999999 999874 799 99999999886 368999999975 457888888877654
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.67 E-value=2.3e-09 Score=79.32 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=38.5
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---c-CCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---M-NKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~-~~CP~Cr~~~~ 61 (252)
+.+.|+||.+.+ ..|+..-.|||.||..|+.++ . ..||.||.++.
T Consensus 21 ~~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 457899999999 999763579999999999886 3 58999999875
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=6.7e-09 Score=71.99 Aligned_cols=45 Identities=20% Similarity=0.509 Sum_probs=39.1
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+.+.|+||.+.+ ..|+....|||.||..|+.++ ...||.||.++.
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYL---IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 468899999999 889765589999999999876 478999999875
No 23
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.65 E-value=3.9e-09 Score=84.99 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=49.0
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCc----ccchhHHHhheeeeEe
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIG----HSRSIAMEKVLESIQV 77 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~----~~r~~~le~~~~~l~v 77 (252)
+.+.||||.+.+ ..|+....|||.||..|+.++ ...||.||.++. ..+|..+++++..+.-
T Consensus 53 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDML---KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHh---hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 356899999999 999876589999999999886 356999999874 3467778888776643
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=9.4e-09 Score=71.16 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=38.8
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhhc------CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM------NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~------~~CP~Cr~~~~ 61 (252)
.+.+.|+||++.+ ..|+.. .|||.||..|+.++. ..||.||.++.
T Consensus 18 ~~~~~C~IC~~~~---~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDIL---QKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBC---SSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCccc---CCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3568999999999 999875 999999999999863 27999999875
No 25
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.63 E-value=4.6e-09 Score=83.56 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=48.0
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhc----CCCCCCCcCCcc----cchhHHHhheeee
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM----NKCPSCRLPIGH----SRSIAMEKVLESI 75 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~----~~CP~Cr~~~~~----~r~~~le~~~~~l 75 (252)
+.+.|+||.+.+ ..|+. ..|||.||..|+.++. ..||.||.++.. .+|..++++++.+
T Consensus 77 ~~~~C~IC~~~~---~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 77 QSFMCVCCQELV---YQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLF 142 (150)
T ss_dssp HHTBCTTTSSBC---SSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHH
T ss_pred cCCEeecCChhh---cCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 457899999999 99987 5899999999998862 379999999863 4788888887654
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.2e-08 Score=69.52 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhhc----CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM----NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~----~~CP~Cr~~~~ 61 (252)
.+.+.|+||.+.+ ..|+. ..|||.||..|+.++. ..||.||.++.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVL---CSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEE---SSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHh---cCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3569999999999 99986 4899999999999752 57999999875
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=70.11 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=39.3
Q ss_pred eCCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+.+.+.|+||++.+ ..|+.. .|||.||..|+.++ ...||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCccc---CCCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 34668999999999 999765 89999999999885 368999999875
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.54 E-value=4e-08 Score=67.04 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=39.4
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+...|+||.+.+ ..|+..-.|||.||..|+.++ ...||.||.++.
T Consensus 3 ~~~~~C~IC~~~~---~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDP---SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCC---CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccc---cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4567899999999 888666689999999999875 478999999875
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.8e-08 Score=68.30 Aligned_cols=45 Identities=22% Similarity=0.452 Sum_probs=37.0
Q ss_pred CeeeecCCcc-cccCCCCce---EEccCCceecccChhhh----cCCCCCCCcCCc
Q 048313 14 TVLHCFISFS-SFIFTLLSV---AECGNGHIVCNRCCIEL----MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~-~l~~~~~Pi---~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~ 61 (252)
+.+.||||.+ .+ ..|. ..-.|||.||..|+.++ ...||.||.++.
T Consensus 2 ~~~~C~IC~~~~~---~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKY---RNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHH---HCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCcc---CCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 5688999999 88 6674 34579999999999886 257999999875
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.52 E-value=1.7e-08 Score=71.39 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=36.4
Q ss_pred CCeeeecCCcccccCCCCce-EEccCCceecccChhhh----cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSV-AECGNGHIVCNRCCIEL----MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi-~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~ 61 (252)
.+.+.||||.+++.. .++. +.|.|||.||..|+.++ ...||.||+++.
T Consensus 9 ~~~~~CpICle~~~~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCBCTTTCCBCCT-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccCCcCCccCccCcc-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 466899999999811 1222 33569999999999886 358999999875
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.51 E-value=3.3e-08 Score=68.92 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=38.0
Q ss_pred CCeeeecCCcccccCCCCceEEcc-CCceecccChhhhc-----CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELM-----NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~-----~~CP~Cr~~~~ 61 (252)
.+.+.|+||.+.+ ..|+. .. |||.||..|+.++. ..||.||.++.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIM---TDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCC---TTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHH---hCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3568999999999 99987 46 99999999998862 48999999753
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.50 E-value=2.1e-08 Score=68.94 Aligned_cols=47 Identities=28% Similarity=0.651 Sum_probs=39.0
Q ss_pred eCCeeeecCCcccccCCCCce------EEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 12 CTTVLHCFISFSSFIFTLLSV------AECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi------~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
..+.+.|+||.+.+ ..|+ ..-.|||.||..|+.++ ...||.||.++.
T Consensus 7 ~~~~~~C~IC~~~~---~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBH---HHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhh---hccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 45678999999999 6662 45689999999999886 478999999875
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=2.8e-08 Score=72.66 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=48.6
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhhc---------CCCCC--CCcC-Cc---ccchhHHHhheeeeE
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM---------NKCPS--CRLP-IG---HSRSIAMEKVLESIQ 76 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~---------~~CP~--Cr~~-~~---~~r~~~le~~~~~l~ 76 (252)
.+.|.||||.++| .+||..-.|||+||..|+.++. ..||. |+.. +. ..+|.+|+++|+.++
T Consensus 5 ~~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 5 SSGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SSCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CcEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 4679999999999 9998753499999999998751 28999 8865 43 457888888877653
No 34
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=3.1e-08 Score=85.52 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=49.5
Q ss_pred eCCeeeecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCc---ccchhHHHhheeee
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
.++.|.||||.++| .+||.. +|||+||..|+.++ ...||.|+.++. ..+|..++++|+.+
T Consensus 205 ~~~~~~c~i~~~~~---~dPv~~-~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 205 IPDYLCGKISFELM---REPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CCSTTBCTTTCSBC---SSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CCcccCCcCcCCHh---cCCeEC-CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 35679999999999 999864 79999999999875 234999999985 45788888887754
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=6.2e-09 Score=78.13 Aligned_cols=44 Identities=30% Similarity=0.686 Sum_probs=37.5
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhc------CCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM------NKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~------~~CP~Cr~~~~ 61 (252)
+.+.|+||.+.+ ..|+. ..|||.||..|+.++. ..||.||.++.
T Consensus 20 ~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELI---KEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCC---SSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhh---cCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 357899999999 99976 4899999999998752 27999999875
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=3.4e-08 Score=70.70 Aligned_cols=45 Identities=31% Similarity=0.595 Sum_probs=37.5
Q ss_pred CCeeeecCCcccccCCCC----ceEEccCCceecccChhhh---c---CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLL----SVAECGNGHIVCNRCCIEL---M---NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~----Pi~qc~~GH~~C~~C~~~~---~---~~CP~Cr~~~~ 61 (252)
.+.+.|+||++.+ .. |+. ..|||.||..|+.++ . ..||.||.++.
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESF---TEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBC---CTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccc---cccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3568899999999 66 765 489999999999886 1 58999999865
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.47 E-value=2.4e-08 Score=67.07 Aligned_cols=45 Identities=27% Similarity=0.714 Sum_probs=37.2
Q ss_pred CeeeecCCcccccCCCCc------eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLS------VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~P------i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+.+.|+||.+.+ ..| +....|||.||..|+.++ ...||.||.++.
T Consensus 2 ~~~~C~IC~~~~---~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBH---HHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhh---hCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 468899999999 665 244589999999999876 368999999875
No 38
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.44 E-value=4e-08 Score=68.59 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=38.8
Q ss_pred CeeeecCCcccccCCCCceEEccCCce-ecccChhhhcCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHI-VCNRCCIELMNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~-~C~~C~~~~~~~CP~Cr~~~~ 61 (252)
+.+.|+||++.+ ..|++. +|||. ||..|+.++ ..||.||.++.
T Consensus 23 ~~~~C~iC~~~~---~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRN---IAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSB---CCEEEE-TTCCBCCCHHHHTTC-SBCTTTCCBCS
T ss_pred cCCCCCCCCCCC---CCEEEc-CCCChhHHHHhhhcC-ccCCCcCcCcc
Confidence 347899999999 999886 89999 999999998 79999999875
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.4e-08 Score=65.45 Aligned_cols=40 Identities=28% Similarity=0.575 Sum_probs=34.0
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhhc------CCCCCC
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM------NKCPSC 56 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~------~~CP~C 56 (252)
.+.+.|+||.+.+ ..|+.. .|||.||..|+.++. ..||.|
T Consensus 18 ~~~~~C~IC~~~~---~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL---QKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC---SSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchh---CCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3568999999999 999765 999999999998762 379987
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=4.8e-08 Score=66.57 Aligned_cols=46 Identities=26% Similarity=0.686 Sum_probs=37.7
Q ss_pred CCeeeecCCcccccCCCCc------eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLS------VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~P------i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+.+.|+||++.+ ..| +..-.|||.||..|+.++ ...||+||.++.
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCH---HHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccc---cccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4568899999999 665 144589999999999886 468999999874
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.41 E-value=4.8e-08 Score=73.82 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=38.8
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhhc----CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM----NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~----~~CP~Cr~~~~ 61 (252)
.+.+.|+||.+.+ ..|+.. .|||.||..|+.++. ..||.||..+.
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCccc---CceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3568999999999 999875 899999999998762 47999999875
No 42
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.39 E-value=1.9e-07 Score=60.83 Aligned_cols=49 Identities=20% Similarity=0.397 Sum_probs=37.1
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+...|+||++.+.+...++..-.|||.||..|+.++ ...||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999998221123455579999999999886 378999998763
No 43
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.38 E-value=1.6e-07 Score=61.20 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=35.3
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+...|+||.+.+.+...++..-.|||.||..|+.++ ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999998221114443239999999999886 368999998753
No 44
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.1e-08 Score=68.66 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=37.9
Q ss_pred eeeecCCcccccCCCCceEEccCCce-ecccChhhhcCCCCCCCcCCcc
Q 048313 15 VLHCFISFSSFIFTLLSVAECGNGHI-VCNRCCIELMNKCPSCRLPIGH 62 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc~~GH~-~C~~C~~~~~~~CP~Cr~~~~~ 62 (252)
.+.|+||++.+ ..|++. +|||. ||..|+.++ ..||.||.++..
T Consensus 25 ~~~C~IC~~~~---~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN---IAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC---CCBCCS-SSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred CCCCCcCCCCC---CCEEEe-cCCCHHHHHHHhhCC-CCCccCCceecC
Confidence 46899999999 999874 89999 999999887 799999998753
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.34 E-value=3.4e-07 Score=64.09 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=36.7
Q ss_pred CeeeecCCcccccCCCCc--eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLS--VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~P--i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+.+.|+||++.+ ..+ +..-.|||.||..|+.++ ...||.||.++.
T Consensus 14 ~~~~C~IC~~~~---~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDY---ALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCC---CTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCeeCCccc---cCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 467899999998 543 344579999999999886 368999999875
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.34 E-value=9e-08 Score=78.09 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=49.5
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---c-CCCCCCCcCCc---ccchhHHHhheeee
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---M-NKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~-~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
++.|.||||.++| .+||.. .|||+||..|+.++ . ..||.|+.++. ..+|.++.+++..+
T Consensus 104 p~~f~CPI~~elm---~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELM---REPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBC---SSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccC---CCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 5679999999999 999875 89999999999885 2 35999999985 45788888887755
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=3.1e-07 Score=63.93 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=37.4
Q ss_pred CCeeeecCCcccccCCCCc--eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLS--VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~P--i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+...|+||++.+ ..+ +..-.|||.||..|+.++ ...||.||.++.
T Consensus 21 ~~~~~C~IC~~~~---~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDF---ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEEC---CBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCccc---CCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 3567899999998 655 344479999999999886 478999999875
No 48
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.29 E-value=2.7e-07 Score=63.01 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=37.5
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+...|+||++.+.+ ..++....|||.||..|+.++ ...||.||.++.
T Consensus 12 ~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 455789999998822 234555689999999999886 478999999875
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.27 E-value=1.7e-07 Score=71.85 Aligned_cols=48 Identities=27% Similarity=0.665 Sum_probs=38.9
Q ss_pred EeCCeeeecCCcccccCCCCce------EEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 11 LCTTVLHCFISFSSFIFTLLSV------AECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 11 ~~~~~l~C~iC~~~l~~~~~Pi------~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+..+.+.|+||++.+ ..|+ ....|||.||..|+.++ ...||.||..+.
T Consensus 3 ~~~~~~~C~IC~~~~---~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 3 MGSGTVSCPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp --CCSCBCTTTCCBH---HHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred cCCCCCCCcccChhh---hCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 456789999999999 7771 34589999999999886 368999999875
No 50
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.2e-07 Score=61.07 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=33.3
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh------cCCCCCC
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL------MNKCPSC 56 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~------~~~CP~C 56 (252)
+.+.|+||.+.+ ..|+. ..|||+||..|+.++ ...||+|
T Consensus 14 ~~~~C~IC~~~~---~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYL---KEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBC---SSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCccc---CccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 568999999999 88976 489999999999886 1579887
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=5.4e-07 Score=62.38 Aligned_cols=46 Identities=22% Similarity=0.533 Sum_probs=37.0
Q ss_pred CCeeeecCCcccccCCCCc--eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLS--VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~P--i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+...|+||++.+ ..+ +....|||.||..|+.++ ...||.||.++.
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDF---KPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBC---CSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCcCCCccc---CCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 3457899999998 544 344479999999999886 468999999875
No 52
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.2e-07 Score=62.41 Aligned_cols=45 Identities=20% Similarity=0.430 Sum_probs=39.2
Q ss_pred eCCeeeecCCcccccCCCCceEEccCCce-ecccChhhhcCCCCCCCcCCc
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECGNGHI-VCNRCCIELMNKCPSCRLPIG 61 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~~GH~-~C~~C~~~~~~~CP~Cr~~~~ 61 (252)
+.+...|+||++.. ..+++. +|||. +|..|..++ ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~---~~~v~~-pCgH~~~C~~C~~~~-~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGT---VNWVLL-PCRHTCLCDGCVKYF-QQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSC---CCCEET-TTTBCCSCTTHHHHC-SSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCC---CCEEEE-CCCChhhhHHHHhcC-CCCCCCCcchh
Confidence 34567899999999 888875 89999 999999977 79999999875
No 53
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.19 E-value=3.4e-07 Score=64.72 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=37.9
Q ss_pred eeeecCCcccccCCCCceEEccCCce-ecccChhhhcCCCCCCCcCCc
Q 048313 15 VLHCFISFSSFIFTLLSVAECGNGHI-VCNRCCIELMNKCPSCRLPIG 61 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc~~GH~-~C~~C~~~~~~~CP~Cr~~~~ 61 (252)
...|+||++.. ..|++. +|||. +|..|..++ ..||.||.++.
T Consensus 18 ~~~C~IC~~~~---~~~v~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEE---INSTFC-PCGHTVCCESCAAQL-QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSB---CCEEEE-TTCBCCBCHHHHTTC-SBCTTTCCBCC
T ss_pred CCEeEEeCccc---CcEEEE-CCCCHHHHHHHHHhc-CcCCCCCchhh
Confidence 46799999999 999886 89999 999999988 59999999875
No 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.17 E-value=6.9e-07 Score=64.69 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=35.9
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+...|+||++.+.+ ..++....|||.||..|+.+| ...||.||.++.
T Consensus 39 ~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 45789999998822 122344579999999999986 368999998764
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.1e-07 Score=63.84 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=36.8
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.+.+.|+||++.+ .. +. -.|||.||..|+.++ ...||.||.++.
T Consensus 13 ~~~~~C~IC~~~~---~~-~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGR---AD-LI-LPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSC---CS-EE-ETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCc---cC-cc-cCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 4568899999999 77 44 489999999999886 368999999875
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.6e-07 Score=78.43 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=47.7
Q ss_pred eCCeeeecCCcccccCCCCceEEccCCceecccChhhhc-----CCCCC--CCcCCc---ccchhHHHhheee
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELM-----NKCPS--CRLPIG---HSRSIAMEKVLES 74 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~-----~~CP~--Cr~~~~---~~r~~~le~~~~~ 74 (252)
....+.||||.++| +.||..-.|||+||..|+.++. ..||+ |+..+. ..+|..|.++++.
T Consensus 178 ~~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 178 GKIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SBCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 35668999999999 9998744799999999998852 36999 999764 4567777776654
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=61.94 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=39.3
Q ss_pred EEeCCeeeecCCcccccCCCC--------------ceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 10 VLCTTVLHCFISFSSFIFTLL--------------SVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 10 ~~~~~~l~C~iC~~~l~~~~~--------------Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.-|.+.-.|+||.+.+ .. ++....|||.|+..|+.++ ...||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~---~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 10 SWDVECDTCAICRVQV---MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCCCSCBTTTTBCT---TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred eecCCCCCCcccChhh---hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4466778899999999 55 4455469999999999986 368999999865
No 58
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.01 E-value=1.7e-06 Score=64.99 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=36.1
Q ss_pred CCeeeecCCcccccCCCCce-----------------EEccCCceecccChhhhc--------CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSV-----------------AECGNGHIVCNRCCIELM--------NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi-----------------~qc~~GH~~C~~C~~~~~--------~~CP~Cr~~~~ 61 (252)
.+...|+||++.+ ..|. ..-.|||.||..|+.+|. ..||+||..+.
T Consensus 23 ~~~~~C~ICl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 23 APEEDCIICMEKL---AVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCSCEETTTTEET---TSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCcCccCChhh---cCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3446899999999 6543 244699999999998752 47999999875
No 59
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=3.1e-06 Score=61.93 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=42.6
Q ss_pred EeeccccCCCCceeeccchHHhHhhhCcccCcCCCCC--CCCcccChhhHhhHhhc
Q 048313 76 QVTCENEDHGCKEKMSYSKKYDHGKACHHARCSCPLA--ACNFVGSFNQIYQHFRG 129 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~p~~CP~~--gC~~~g~~~~L~~Hl~~ 129 (252)
.+.||| .|...+...++++|...|+.+.+.|++. ||.+++.+.+|.+|++.
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence 578886 5888888888888888888888888877 88888888888888874
No 60
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.95 E-value=2.9e-06 Score=59.12 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=47.0
Q ss_pred eEeeccccCCCCceeeccchHHhHhh-hCcccCcCCCCCCCCcccChhhHhhHhhcccCCC
Q 048313 75 IQVTCENEDHGCKEKMSYSKKYDHGK-ACHHARCSCPLAACNFVGSFNQIYQHFRGVHKHA 134 (252)
Q Consensus 75 l~v~C~~~~~GC~~~~~~~~~~~H~~-~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~~H~~~ 134 (252)
..|.|++ ||+..+...++++|++ .|+++++.|++ |++...+.+|..|.. .+...
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~~-~Cp~~ 69 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEG-MCPQE 69 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTTT-SCTTS
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHHh-HCCCC
Confidence 3577876 8999999999999998 89999999997 999999999999984 45543
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.93 E-value=4.5e-06 Score=74.83 Aligned_cols=43 Identities=33% Similarity=0.596 Sum_probs=39.1
Q ss_pred CeeeecCCcccccCCCCceEEccCCce-ecccChhhhcCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHI-VCNRCCIELMNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~-~C~~C~~~~~~~CP~Cr~~~~ 61 (252)
+.+.|+||.+.+ ..|++. +|||. ||..|+.++ ..||.||.++.
T Consensus 294 ~~~~C~IC~~~~---~~~v~l-pCgH~~fC~~C~~~~-~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE---VSVVFI-PCGHLVVCQECAPSL-RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB---CCEEEE-TTCCEEECTTTGGGC-SBCTTTCCBCC
T ss_pred CCCCCCccCCcC---CceEEc-CCCChhHhHHHHhcC-CcCCCCCCCcc
Confidence 357899999999 999886 99999 999999998 79999999875
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.93 E-value=1.9e-06 Score=65.86 Aligned_cols=49 Identities=24% Similarity=0.642 Sum_probs=40.6
Q ss_pred EEeCCeeeecCCcccccCCCCc------eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 10 VLCTTVLHCFISFSSFIFTLLS------VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 10 ~~~~~~l~C~iC~~~l~~~~~P------i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.++.+.+.|+||.+.+ ..| .....|||.||..|+.++ ...||.||.++.
T Consensus 67 ~i~~~~~~C~iC~~~~---~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 67 YIGSGTVSCPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp BCSSSSCBCTTTCCBH---HHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred ccCCCCCCCCCCCCcc---ccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4567789999999998 665 245689999999999875 479999999875
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.88 E-value=3.6e-06 Score=56.88 Aligned_cols=46 Identities=28% Similarity=0.585 Sum_probs=38.1
Q ss_pred CCeeeecCCcccccCCCCceEE-ccCCce-ecccChhhhc---CCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAE-CGNGHI-VCNRCCIELM---NKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~q-c~~GH~-~C~~C~~~~~---~~CP~Cr~~~~ 61 (252)
.+...|+||++.. .++++. -+|||. +|..|..++. ..||+||.++.
T Consensus 6 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4567899999999 888763 379999 8999998863 57999999875
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.85 E-value=1.3e-05 Score=59.80 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=43.6
Q ss_pred eEEEEEEeCCeeeecCCcccccCCCCc-----------------eEEccCCceecccChhhh---cCCCCCCCcCCcc
Q 048313 5 CVCHFVLCTTVLHCFISFSSFIFTLLS-----------------VAECGNGHIVCNRCCIEL---MNKCPSCRLPIGH 62 (252)
Q Consensus 5 ~~~~~~~~~~~l~C~iC~~~l~~~~~P-----------------i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 62 (252)
.|..-.-|.+.-.|+||.+.+ ..+ +..-.|||.|+..|+.++ ...||+||.++..
T Consensus 27 ~v~~w~~d~~~d~CaIC~~~~---~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 27 AVALWAWDIVVDNCAICRNHI---MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp EEEEEEESSCSCCCSSSCSCT---TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred EeeEeecCCCCCCCccCChhH---hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 455566678888999999998 543 555579999999999986 4789999998653
No 65
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.84 E-value=4.3e-06 Score=75.80 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=37.9
Q ss_pred eeeecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCcc
Q 048313 15 VLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIGH 62 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~~ 62 (252)
...|+||.+.+ ..|+.. +|||.||..|+..+ ...||.||.++..
T Consensus 332 ~~~C~ICle~~---~~pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB---CCEEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCC---CCeEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 37899999999 999765 89999999999875 3689999998753
No 66
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=58.26 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=50.9
Q ss_pred ceecccChhhh-------c-----CCCC-CCCcCCcccchhHHH--hheeeeEeeccccCCCCceeeccchHHhHhhhCc
Q 048313 39 HIVCNRCCIEL-------M-----NKCP-SCRLPIGHSRSIAME--KVLESIQVTCENEDHGCKEKMSYSKKYDHGKACH 103 (252)
Q Consensus 39 H~~C~~C~~~~-------~-----~~CP-~Cr~~~~~~r~~~le--~~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~ 103 (252)
|.-|..|+.+- . -.|| .|...+ .|...-| .+--...++|+|+.+||+.++...++.+|++.|+
T Consensus 14 h~HC~~C~~~~C~~~~~~~~~C~~i~CP~~Cga~i--~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CP 91 (100)
T 2yre_A 14 HSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVF--HSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCP 91 (100)
T ss_dssp CTTGGGCCCTTCCCCCCTTTCCCEEECTTCCSCEE--EHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCG
T ss_pred chhHhhhcccccCCCCCCCCeeeeeeCCcccCCee--ehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCC
Confidence 66677777652 0 1377 576632 2332222 2355678999999999999999999999999999
Q ss_pred ccCcCCC
Q 048313 104 HARCSCP 110 (252)
Q Consensus 104 ~~p~~CP 110 (252)
-+.+.|.
T Consensus 92 as~v~~~ 98 (100)
T 2yre_A 92 ASVSGPS 98 (100)
T ss_dssp GGCCCCC
T ss_pred ceeEecC
Confidence 9988775
No 67
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.79 E-value=2.3e-06 Score=59.72 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=43.1
Q ss_pred cchHHhHhhhCcccCcCCCCCCCCcccChhhHhhHhhcccCCCCeeEEeC
Q 048313 92 YSKKYDHGKACHHARCSCPLAACNFVGSFNQIYQHFRGVHKHAAEEFVYD 141 (252)
Q Consensus 92 ~~~~~~H~~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~ 141 (252)
..++++|++.|+|+++.||+ +|+....+.+|.+|+..++..+.+...|-
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~C 50 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFC 50 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSSS
T ss_pred chHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCCC
Confidence 35778999999999999997 89999999999999998888887766653
No 68
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.70 E-value=8.3e-06 Score=54.88 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=36.6
Q ss_pred CeeeecCCcccccCCCCceEE-ccCCce-ecccChhhhc---CCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAE-CGNGHI-VCNRCCIELM---NKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~q-c~~GH~-~C~~C~~~~~---~~CP~Cr~~~~ 61 (252)
+...|+||++.. +++++. -+|||. +|..|..++. ..||.||.++.
T Consensus 6 ~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345799999998 887642 479998 9999998863 48999999875
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.64 E-value=4.4e-05 Score=55.70 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=55.6
Q ss_pred eecCCcccccCCCCceEEccCCceecccChhhh----cCCCCCCCcCCcccchhHHHhheeeeEeeccccCCCCceeecc
Q 048313 17 HCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL----MNKCPSCRLPIGHSRSIAMEKVLESIQVTCENEDHGCKEKMSY 92 (252)
Q Consensus 17 ~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~----~~~CP~Cr~~~~~~r~~~le~~~~~l~v~C~~~~~GC~~~~~~ 92 (252)
-|++|..|+ ..-...=+|.|.||.+|...+ .+.||.|+.++.......++
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~----------------------- 56 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRG----------------------- 56 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGG-----------------------
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccC-----------------------
Confidence 489999998 665556689999999999764 26899999987532111111
Q ss_pred chHHhHhhhCcccCcCCC-CCCCCccc-ChhhHhhHhhcccCCCC
Q 048313 93 SKKYDHGKACHHARCSCP-LAACNFVG-SFNQIYQHFRGVHKHAA 135 (252)
Q Consensus 93 ~~~~~H~~~C~~~p~~CP-~~gC~~~g-~~~~L~~Hl~~~H~~~~ 135 (252)
..+.|+ .+||.-.. +..+|..|....|....
T Consensus 57 ------------~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~~~ 89 (101)
T 3vk6_A 57 ------------SLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAG 89 (101)
T ss_dssp ------------GCCCCCCCCCCCCCCSSHHHHHHHHHHHTTTSC
T ss_pred ------------CEEECCCCCCHHHHhcCHHHHHHHHHHHhhhcC
Confidence 123555 55776554 67888888888887543
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.57 E-value=2e-05 Score=59.73 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=7.3
Q ss_pred eEEEEEEeCCeeeecCCcccccCCCCc-----------------eEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 5 CVCHFVLCTTVLHCFISFSSFIFTLLS-----------------VAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 5 ~~~~~~~~~~~l~C~iC~~~l~~~~~P-----------------i~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.|....-|.+.-.|+||.+.+ ..+ +....|||.|+..|+.++ ...||.||.++.
T Consensus 38 ava~w~wd~~~d~CaICl~~~---~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 38 AVALWAWDIVVDNCAICRNHI---MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp EEEEEEECCCC------------------------------------------------------------------
T ss_pred EEEEEeecCCCCcCeECChhh---cCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 355566788888999999998 543 333369999999999986 368999999864
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.45 E-value=2.9e-05 Score=56.19 Aligned_cols=44 Identities=16% Similarity=0.421 Sum_probs=32.9
Q ss_pred CCeeeecCCcccccCCCCceEE--ccCCceecccChhhh-----------cCCCCC--CCcC
Q 048313 13 TTVLHCFISFSSFIFTLLSVAE--CGNGHIVCNRCCIEL-----------MNKCPS--CRLP 59 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~q--c~~GH~~C~~C~~~~-----------~~~CP~--Cr~~ 59 (252)
.+.+.|+||++.+ ..|... -.|||.||..|+... .-.||. |+..
T Consensus 3 ~~~~~C~IC~~~~---~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEY---PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCC---BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccc---ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998 777543 259999999998763 025777 7766
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.43 E-value=4.6e-05 Score=50.95 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=37.4
Q ss_pred eeeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 15 VLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
.|.|||+.+++ .+|+..-.+||+|+..|+.++ .+.||+.++++.
T Consensus 3 ~~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 47899999999 999764379999999999986 367999999875
No 73
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=9.1e-05 Score=51.27 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=43.8
Q ss_pred eEeeccccCCCCceeeccchHHhHhhhCcccCcCCCCCCCCcccChhhHhhHhhc
Q 048313 75 IQVTCENEDHGCKEKMSYSKKYDHGKACHHARCSCPLAACNFVGSFNQIYQHFRG 129 (252)
Q Consensus 75 l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~ 129 (252)
..+.|++ |...+...++..|+..|+.+|+.|+. |+....+.+|..|+..
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEV 64 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHH
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHH
Confidence 3567774 99999999999999999999999986 9999999999999875
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.86 E-value=0.00071 Score=54.08 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=44.8
Q ss_pred eeEeeccccCCCCceeeccchHHhHh-hhCcccCcCCCCCCCCcccChhhHhhHhhc
Q 048313 74 SIQVTCENEDHGCKEKMSYSKKYDHG-KACHHARCSCPLAACNFVGSFNQIYQHFRG 129 (252)
Q Consensus 74 ~l~v~C~~~~~GC~~~~~~~~~~~H~-~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~ 129 (252)
-..++|+ ||++.+...++..|+ ..|++++..||+ |+......+|.+|...
T Consensus 108 ~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~--C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 108 FALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN--CAASMAFEDKEIHDQN 158 (170)
T ss_dssp TSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT--TCCEEEGGGHHHHHTT
T ss_pred ceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC--CCCccCHHHHHhHHHh
Confidence 3467887 899999999999999 599999999984 9999999999999864
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.0064 Score=42.62 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=35.2
Q ss_pred eCCeeeecCCcccccCCCCceEEccC-----CceecccChhhhc-----CCCCCCCcCCc
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECGN-----GHIVCNRCCIELM-----NKCPSCRLPIG 61 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~~-----GH~~C~~C~~~~~-----~~CP~Cr~~~~ 61 (252)
+.+...|.||++.+-+ ..++. -+| +|.|-..|+.+|. ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD-ESPLI-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCS-SSCEE-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccC-CCeeE-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4556789999987622 34554 345 3999999999872 48999999874
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.77 E-value=0.0059 Score=54.25 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=37.0
Q ss_pred CeeeecCCcccccC-CCCceEEcc---CCceecccChhhhc--------------CCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIF-TLLSVAECG---NGHIVCNRCCIELM--------------NKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~-~~~Pi~qc~---~GH~~C~~C~~~~~--------------~~CP~Cr~~~~ 61 (252)
..-+|+||+..+.+ ..-|...|. |||.|=+.|+.+|- +.||.||.++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 44679999999832 223767784 89999999998861 46999999875
No 77
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.64 E-value=0.0068 Score=45.34 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHhheeeeEeeccccCCCCceeeccchHHh---HhhhCcccCcCCCCCCCCcccChhhHhhHhhcccCC
Q 048313 68 MEKVLESIQVTCENEDHGCKEKMSYSKKYD---HGKACHHARCSCPLAACNFVGSFNQIYQHFRGVHKH 133 (252)
Q Consensus 68 le~~~~~l~v~C~~~~~GC~~~~~~~~~~~---H~~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~~H~~ 133 (252)
+++.+..-...||. |...+...++.. =++.=.-..+.||+.||+|.+...+|.+|++..+..
T Consensus 45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC-
T ss_pred HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhh
Confidence 33433333337885 777766543210 011222356889999999999999999999877664
No 78
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.26 E-value=0.032 Score=38.45 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=35.3
Q ss_pred CeeeecCCcccccCCCCceEEc-cCCceecccChhhh---c--CCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAEC-GNGHIVCNRCCIEL---M--NKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc-~~GH~~C~~C~~~~---~--~~CP~Cr~~~~ 61 (252)
..-.|.||++++ .+ -..| .|+|.|=..|+.++ . ..||.|+.+..
T Consensus 14 ~i~~C~IC~~~i---~~-g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLL---IQ-GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBC---SS-SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHc---cc-CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 346799999999 64 4568 49999999999876 2 68999998864
No 79
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.00 E-value=0.049 Score=35.55 Aligned_cols=53 Identities=15% Similarity=0.436 Sum_probs=39.8
Q ss_pred EeeccccCCCCceeeccchHHhHhhhCcccCcCCCCCCCCccc-ChhhHhhHhhcccCC
Q 048313 76 QVTCENEDHGCKEKMSYSKKYDHGKACHHARCSCPLAACNFVG-SFNQIYQHFRGVHKH 133 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 133 (252)
.+.|+. |+..+...++..|++.+.-+|+.|++ .|+... .+.+|..|++..+..
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~~ 63 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCNT 63 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSSS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhccc
Confidence 466764 88877777788998888888999973 488764 456899998865543
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.89 E-value=0.016 Score=42.96 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=47.5
Q ss_pred CCCCCCCcCCcc---cch------hHHHhheeeeEeeccccCCCCceeeccchHH----hHhhhCcccCcCCCCCCCCcc
Q 048313 51 NKCPSCRLPIGH---SRS------IAMEKVLESIQVTCENEDHGCKEKMSYSKKY----DHGKACHHARCSCPLAACNFV 117 (252)
Q Consensus 51 ~~CP~Cr~~~~~---~r~------~~le~~~~~l~v~C~~~~~GC~~~~~~~~~~----~H~~~C~~~p~~CP~~gC~~~ 117 (252)
..||+|...+.. ..+ .-+++.+......||. |...+...++. .-++.=.-..+.||+.||+|.
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~ 99 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEE 99 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCE
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcch
Confidence 478998876542 111 1244444433456885 77776654432 112222345678999999999
Q ss_pred cChhhHhhHhhc
Q 048313 118 GSFNQIYQHFRG 129 (252)
Q Consensus 118 g~~~~L~~Hl~~ 129 (252)
+...++..|+..
T Consensus 100 ~~~~~~~~H~~~ 111 (116)
T 1rmd_A 100 VSLEKYNHHVSS 111 (116)
T ss_dssp EEHHHHHHHHHT
T ss_pred hhHhHHHHHHHH
Confidence 999999999975
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.65 E-value=0.022 Score=41.12 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=27.7
Q ss_pred CeeeecCCcc-cccCCCCceEEcc-CCceecccChhh
Q 048313 14 TVLHCFISFS-SFIFTLLSVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 14 ~~l~C~iC~~-~l~~~~~Pi~qc~-~GH~~C~~C~~~ 48 (252)
+.+.|++|.+ +. .+|+..|. |||.||..|+..
T Consensus 2 ee~~C~~C~~~~~---~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPA---QDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSC---CBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCC---CCceEECCcCChHHhHHHCHH
Confidence 5688999996 47 88998876 999999999987
No 82
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.87 E-value=0.033 Score=38.01 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=33.9
Q ss_pred chHHhHhh-hCcccCcCCCCCCCCcccChhhHhhHhhcccCCCCee
Q 048313 93 SKKYDHGK-ACHHARCSCPLAACNFVGSFNQIYQHFRGVHKHAAEE 137 (252)
Q Consensus 93 ~~~~~H~~-~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~ 137 (252)
.++..|+. .|+++|+.|++ |+......+|..|. ..+......
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~--C~~~~~~~~L~~H~-~~c~~~~~~ 45 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH--CDLELSILKLKEHE-DYCGARTEL 45 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS--SCCEECHHHHHHHH-HHHHHCEEE
T ss_pred hHHHhhCcccCCCcccCCcc--cChHhhHHHHHHHH-hHcCCCceE
Confidence 46788987 89999999985 99999999999998 555444333
No 83
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=91.80 E-value=0.24 Score=34.14 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=48.4
Q ss_pred CCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhhCcc---cCcCCCCCCCCccc-ChhhHh
Q 048313 52 KCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKACHH---ARCSCPLAACNFVG-SFNQIY 124 (252)
Q Consensus 52 ~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C~~---~p~~CP~~gC~~~g-~~~~L~ 124 (252)
.|+.|...+....... +..-.+...+.|+. |+..+. ...+..|+..-.- .++.|+. |+... ....|.
T Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~L~ 82 (95)
T 2yt9_A 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLN 82 (95)
T ss_dssp ECSSSCCEESSSHHHHHHHHHSCSSCSEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHHHHH
T ss_pred ECCCCCCccCChHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHHHHH
Confidence 4666666554322211 22222334567775 887765 4567788875433 6889985 88776 468899
Q ss_pred hHhhcccCCC
Q 048313 125 QHFRGVHKHA 134 (252)
Q Consensus 125 ~Hl~~~H~~~ 134 (252)
.|++..|..+
T Consensus 83 ~H~~~~H~~~ 92 (95)
T 2yt9_A 83 GHIKQVHSGP 92 (95)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHhcCCC
Confidence 9999888754
No 84
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=90.09 E-value=0.43 Score=34.41 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcCCcccchhHHHh-----heeeeEeeccccCCCCce
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLPIGHSRSIAMEK-----VLESIQVTCENEDHGCKE 88 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~~~~~r~~~le~-----~~~~l~v~C~~~~~GC~~ 88 (252)
..+.|++|...+ ..... -.-|.- .-.......|+.|...+....+...-. -.....+.|+. |+.
T Consensus 6 ~~~~C~~C~~~f---~~~~~--l~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~ 74 (124)
T 2dlq_A 6 SGVECPTCHKKF---LSKYY--LKVHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQE 74 (124)
T ss_dssp SSCCCTTTCCCC---SSHHH--HHHHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCC
T ss_pred CCCCCCCCCCcC---CCHHH--HHHHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCC
Confidence 457788888777 43211 012210 000001257999988775433322111 12345678875 888
Q ss_pred eec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccCCC
Q 048313 89 KMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHKHA 134 (252)
Q Consensus 89 ~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 134 (252)
.+. ...+..|+.. -.-.|+.|+. |+... ...+|..|++..|..+
T Consensus 75 ~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 121 (124)
T 2dlq_A 75 TFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSGP 121 (124)
T ss_dssp EESSHHHHHHHHHHHSSSCSEECSS--SCCEESSHHHHHHHHHHTSSCS
T ss_pred ccCCHHHHHHHHHHcCCCCCccCCC--ccchhCCHHHHHHHHHHHCCCC
Confidence 775 4567888874 3456789985 98876 4688999999888764
No 85
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.78 E-value=0.56 Score=32.25 Aligned_cols=78 Identities=17% Similarity=0.347 Sum_probs=50.1
Q ss_pred CCCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhhC-cccCcCCCCCCCCccc-ChhhHhh
Q 048313 51 NKCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKAC-HHARCSCPLAACNFVG-SFNQIYQ 125 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C-~~~p~~CP~~gC~~~g-~~~~L~~ 125 (252)
..|+.|...+....... +..-.....+.|+. |+..+. ...+..|+..- .-.++.|+. |+... ...+|..
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~ 82 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTV 82 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEESSHHHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHhcCCCCCEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHH
Confidence 46888887765332221 22222334567874 888765 45677888753 346789985 88776 4688999
Q ss_pred HhhcccCCC
Q 048313 126 HFRGVHKHA 134 (252)
Q Consensus 126 Hl~~~H~~~ 134 (252)
|++..|...
T Consensus 83 H~~~h~~~~ 91 (96)
T 2dmd_A 83 HLRSHTGDS 91 (96)
T ss_dssp HHTTCCSCC
T ss_pred HHHHhcCCC
Confidence 998776543
No 86
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.38 E-value=0.76 Score=34.61 Aligned_cols=55 Identities=25% Similarity=0.503 Sum_probs=27.2
Q ss_pred eEeeccccCCCCceeec-cchHHhHh-h-hCcccCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 75 IQVTCENEDHGCKEKMS-YSKKYDHG-K-ACHHARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 75 l~v~C~~~~~GC~~~~~-~~~~~~H~-~-~C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
..+.|+.. ||+..+. ...+..|+ . --.-.|+.|+.++|+.... ...|..|++..|
T Consensus 96 ~~~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 96 KPYMCEHE--GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp CCEECCST--TCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CCeeCCCC--CCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence 34555432 4655543 34455555 2 1233455665555665542 455666665544
No 87
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=88.17 E-value=0.44 Score=34.54 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=63.6
Q ss_pred EeCCeeeec--CCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcCCcccchhH--HHhheeeeEeeccccCCCC
Q 048313 11 LCTTVLHCF--ISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGC 86 (252)
Q Consensus 11 ~~~~~l~C~--iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC 86 (252)
|++..+.|+ +|...+ ..... -..|.-=. ......|+.|...+....... +..-.+.-.+.|+.. +|
T Consensus 1 ~~~~~~~C~~~~C~~~f---~~~~~--l~~H~~~h---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C 70 (124)
T 1ubd_C 1 MEPRTIACPHKGCTKMF---RDNSA--MRKHLHTH---GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE--GC 70 (124)
T ss_dssp ----CEECCSTTCCCEE---SSHHH--HHHHHGGG---SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCST--TC
T ss_pred CCCCcccCCCCCCcCcc---CCHHH--HHHHHHHc---CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCC--CC
Confidence 355667888 788777 43210 01222100 111247999988765332221 222233445778642 68
Q ss_pred ceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 87 KEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 87 ~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
+..+. ...+..|++. -.-.++.||..+|+... ....|..|++..+.
T Consensus 71 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~ 119 (124)
T 1ubd_C 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119 (124)
T ss_dssp CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence 88775 4567788763 34468899877898877 46889999887544
No 88
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=87.75 E-value=0.27 Score=32.17 Aligned_cols=37 Identities=22% Similarity=0.678 Sum_probs=28.6
Q ss_pred eecCCcccccCCCCc-eEEcc-CCceecccChh---hhcCCCCCC
Q 048313 17 HCFISFSSFIFTLLS-VAECG-NGHIVCNRCCI---ELMNKCPSC 56 (252)
Q Consensus 17 ~C~iC~~~l~~~~~P-i~qc~-~GH~~C~~C~~---~~~~~CP~C 56 (252)
.|-.|...+ .++ .|+|+ |++.||..|=. .....||.|
T Consensus 17 ~C~~C~~~~---~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGEL---KDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEEC---TTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCccc---CCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 499999998 444 48998 89999999943 222789988
No 89
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=87.60 E-value=0.21 Score=35.69 Aligned_cols=46 Identities=22% Similarity=0.451 Sum_probs=35.8
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 61 (252)
.+=|.|..|..+| ....+.-..|.++|..|..++ ..+|..|.++|.
T Consensus 31 ~~CF~C~~C~~~L---~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPL---ANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCT---TSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCC---CcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 3447899999999 554344368999999998875 478999998875
No 90
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=86.95 E-value=0.95 Score=34.16 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=52.7
Q ss_pred CCCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhhC-cccCcCCCCCCCCcccC-hhhHhh
Q 048313 51 NKCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKAC-HHARCSCPLAACNFVGS-FNQIYQ 125 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C-~~~p~~CP~~gC~~~g~-~~~L~~ 125 (252)
..|+.|...+....... +..-.+.-.+.|+.. +|+..+. ...+..|++.- .-.|+.|+.++|+.... ...|..
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~ 140 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP--GCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCT--TTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHH
T ss_pred cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcC--CCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHH
Confidence 36999988775332221 222223445778742 6888775 45678888742 34678998778988774 578999
Q ss_pred HhhcccCC
Q 048313 126 HFRGVHKH 133 (252)
Q Consensus 126 Hl~~~H~~ 133 (252)
|++..+..
T Consensus 141 H~~~H~~~ 148 (155)
T 2rpc_A 141 HMHVHTSD 148 (155)
T ss_dssp SSTTTTSC
T ss_pred HHHHhcCC
Confidence 98865543
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=86.91 E-value=0.13 Score=37.06 Aligned_cols=38 Identities=32% Similarity=0.660 Sum_probs=29.8
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh--cCCCCCCCcCCc
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL--MNKCPSCRLPIG 61 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~--~~~CP~Cr~~~~ 61 (252)
..||.|...| .. ..|+..|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL---~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVL---DQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBE---EE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcc---ee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 7899999999 32 35666799997763 368999999875
No 92
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=85.84 E-value=0.52 Score=31.42 Aligned_cols=76 Identities=21% Similarity=0.484 Sum_probs=44.3
Q ss_pred CC--CCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhhCcccCcCCCCCC-CCcccC-hhhHh
Q 048313 52 KC--PSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKACHHARCSCPLAA-CNFVGS-FNQIY 124 (252)
Q Consensus 52 ~C--P~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C~~~p~~CP~~g-C~~~g~-~~~L~ 124 (252)
.| +.|...+....+.. +..-.+...+.|+. .||+..+. ..++..|++.-.- +.|+.++ |+.... ...|.
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~ 78 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL 78 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHH
Confidence 46 66766554222211 22222334567864 27887765 4456777764221 7787665 888774 57888
Q ss_pred hHhhccc
Q 048313 125 QHFRGVH 131 (252)
Q Consensus 125 ~Hl~~~H 131 (252)
.|++..|
T Consensus 79 ~H~~~hh 85 (85)
T 2j7j_A 79 KHVAECH 85 (85)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 8887655
No 93
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=85.29 E-value=0.42 Score=35.55 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 61 (252)
++-|.|..|..+| ...-+.-..|..+|..|..++ ..+|..|.++|.
T Consensus 28 ~~CF~C~~C~~~L---~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSIL---AGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBC---TTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCC---CcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 3458899999999 553344478999999999875 478999999876
No 94
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=84.54 E-value=0.25 Score=38.01 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=22.7
Q ss_pred ccCcCCCCCCCCcccChhhHhh-Hhhc
Q 048313 104 HARCSCPLAACNFVGSFNQIYQ-HFRG 129 (252)
Q Consensus 104 ~~p~~CP~~gC~~~g~~~~L~~-Hl~~ 129 (252)
-.++.||+.||+|.+...++.+ |+..
T Consensus 102 ~L~v~Cpn~GC~~~~~l~~l~~~H~~~ 128 (141)
T 3knv_A 102 SLPAVCPSDGCTWKGTLKEYESCHEGR 128 (141)
T ss_dssp TSEEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred ccccccCCCCCCCEeEHHHHHHHHHHH
Confidence 4567999999999999999998 9864
No 95
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=84.39 E-value=1.3 Score=29.38 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=33.0
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcCC
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLPI 60 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~~ 60 (252)
-.|..|..-+ .-+.++|.||..||+.=+..-...|+..-+..
T Consensus 16 ~rC~~C~kkv---gl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~ 57 (64)
T 1wg2_A 16 NRCFSCNKKV---GVMGFKCKCGSTFCGSHRYPEKHECSFDFKEV 57 (64)
T ss_dssp CSCTTTCCCC---TTSCEECTTSCEECSSSCSSTTTTCCCCCSCS
T ss_pred CcChhhCCcc---cccCeEeecCCEecccCCCccccCCCcchhHH
Confidence 4799999977 55558999999999998776557888765544
No 96
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.03 E-value=1.2 Score=33.39 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=37.8
Q ss_pred eeEeeccccCCCCceeec-cchHHhHhhhC-cccCcCCCCCCCCccc-ChhhHhhHhhcccCC
Q 048313 74 SIQVTCENEDHGCKEKMS-YSKKYDHGKAC-HHARCSCPLAACNFVG-SFNQIYQHFRGVHKH 133 (252)
Q Consensus 74 ~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C-~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 133 (252)
...+.|+.. +|+..+. ...+..|++.- .-.|+.|+.++|+... ...+|..|+...|..
T Consensus 65 ~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~ 125 (155)
T 2gli_A 65 EKPHKCTFE--GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125 (155)
T ss_dssp CCCCCCCST--TCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred CCCccCCCC--CCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence 345667632 5777665 44577887642 3457888877788776 457888888666653
No 97
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=83.81 E-value=1.6 Score=30.50 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhh
Q 048313 51 NKCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQ 125 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~ 125 (252)
..|+.|...+....+.. +..-.+...+.|+. |...+. ...+..|+.. -.-.++.|+. |+... ....|..
T Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~ 91 (106)
T 2ee8_A 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDI----CHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGKGFCQSRTLAV 91 (106)
T ss_dssp CBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSS----SCCBCSCHHHHHHHGGGSCCCCTTSCSS--SCCCCSSHHHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHHcCCCCCcCCCC----ccchhCCHHHHHHHHHHhCCCCCeECCC--cCCcccCHHHHHH
Confidence 46888887765332221 22223344567774 887764 4567888874 3346789985 88776 4688999
Q ss_pred HhhcccCC
Q 048313 126 HFRGVHKH 133 (252)
Q Consensus 126 Hl~~~H~~ 133 (252)
|++..+..
T Consensus 92 H~~~H~~~ 99 (106)
T 2ee8_A 92 HKTLHMQT 99 (106)
T ss_dssp HHHHTTSC
T ss_pred HHHHhCCC
Confidence 98765543
No 98
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=83.12 E-value=1.6 Score=28.91 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=32.7
Q ss_pred eeeecCCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcC
Q 048313 15 VLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
.-.|..|.+-+ .-+-++|.||..||+.=+..-...|+..-+.
T Consensus 15 ~~rC~~C~kkv---gl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~ 56 (64)
T 1wfh_A 15 PNRCTVCRKRV---GLTGFMCRCGTTFCGSHRYPEVHGCTFDFKS 56 (64)
T ss_dssp CCCCTTTCCCC---CTTCEECSSSCEECTTTCSTTTTTCCCCCSC
T ss_pred CCcChhhCCcc---CccCEEeecCCEeccccCCcccCCCCchhhH
Confidence 45799999976 5545899999999999877655788866443
No 99
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=82.60 E-value=0.46 Score=33.68 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=47.3
Q ss_pred CCCCCCCcCCcccchhHHHhheeeeEeeccccCCCCceeec-cchHHhHhhhCcccCcCCCCCCCCccc-ChhhHhhHhh
Q 048313 51 NKCPSCRLPIGHSRSIAMEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKACHHARCSCPLAACNFVG-SFNQIYQHFR 128 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~~le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C~~~p~~CP~~gC~~~g-~~~~L~~Hl~ 128 (252)
..|+.|...+....+...-...-.-.+.|+. |...+. ...+..|+..-.-.|+.|+. |+... ....|..|++
T Consensus 17 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~----C~~~f~~~~~l~~H~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~ 90 (107)
T 1wjp_A 17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPY----CSLRFFSPELKQEHESKCEYKKLTCLE--CMRTFKSSFSIWRHQV 90 (107)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHHHHSBCCTT----TCCCBSSHHHHHHHHHHCSTGGGEEGG--GTEECSSHHHHHHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHHCCCCccCCC----CCCccCCHHHHHHHHHcCCCCCccCcc--ccchhCCHHHHHHHHH
Confidence 4688888776533222111111112456764 777664 34567887544456788975 88776 4688999998
Q ss_pred cccCC
Q 048313 129 GVHKH 133 (252)
Q Consensus 129 ~~H~~ 133 (252)
..|..
T Consensus 91 ~~H~~ 95 (107)
T 1wjp_A 91 EVHNQ 95 (107)
T ss_dssp HTSCC
T ss_pred HHcCC
Confidence 77764
No 100
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=81.22 E-value=1.1 Score=30.02 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecc-cChhhh-cCCCCCCCcCC
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCN-RCCIEL-MNKCPSCRLPI 60 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~-~C~~~~-~~~CP~Cr~~~ 60 (252)
.+-|.|..|..+| ..-.+.-..|.++|. .|..++ ..+|..|...+
T Consensus 25 ~~CF~C~~C~~~L---~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTL---TSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBC---CTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCCccccCccC---CCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 4557899999999 542233378999999 698875 47898888654
No 101
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=81.05 E-value=1.1 Score=29.53 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=43.7
Q ss_pred CCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhH
Q 048313 52 KCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQH 126 (252)
Q Consensus 52 ~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~H 126 (252)
.|+.|...+....... +..-.+.-.+.|+. |+..+. ...+..|+.. -.-.++.|+. |+... ...+|..|
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H 76 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITH 76 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT--TSCEESSHHHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC--cchhhCChHHHHHH
Confidence 4777766554322211 22222344567774 877764 4456777763 3346788975 88776 46789999
Q ss_pred hhcc
Q 048313 127 FRGV 130 (252)
Q Consensus 127 l~~~ 130 (252)
++..
T Consensus 77 ~~~H 80 (82)
T 2kmk_A 77 SRKH 80 (82)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8754
No 102
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.82 E-value=2.4 Score=28.89 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=32.9
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcCC
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLPI 60 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~~ 60 (252)
-.|..|..-+ .-+-++|.||..||+.=+..-...|+..-+..
T Consensus 26 ~RC~~C~kkv---gL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfp_A 26 TRCLSCNKKV---GVTGFKCRCGSTFCGTHRYPESHECQFDFKGV 67 (74)
T ss_dssp CBCSSSCCBC---TTTCEECTTSCEECTTTCSTTTSCCCSCTTSC
T ss_pred ccchhhcCcc---cccceEeccCCEeccccCCCcCCCCcCchhHH
Confidence 5699999877 55568999999999998776557888765543
No 103
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.83 E-value=0.77 Score=30.39 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=18.4
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhhcCCCC
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCP 54 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP 54 (252)
|.|..|..+| ....+.-..|.++|..|..++-.+|+
T Consensus 34 F~C~~C~~~L---~~~~~~~~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 34 FVCSTCRAQL---RGQHFYAVERRAYCEGCYVATLESGP 69 (72)
T ss_dssp CBCSSSCCBC---TTSCEEESSSCEEEHHHHHHHHHTCS
T ss_pred CcccccCCcC---CcCcCEeeCCeEECHHHHHHHHccCC
Confidence 5566666666 33223224566666666555433444
No 104
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=78.83 E-value=2.3 Score=30.32 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhh----CcccCcCCCCCCCCccc-Chhh
Q 048313 51 NKCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKA----CHHARCSCPLAACNFVG-SFNQ 122 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~----C~~~p~~CP~~gC~~~g-~~~~ 122 (252)
..|+.|...+....... +..-.+...+.|+. |+..+. ...+..|+.. =.-.++.|+. |+... ....
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~~~ 81 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRME 81 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEESSHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccCCHHH
Confidence 47999988765332221 22233344577874 887764 5567899874 2345688985 98876 4688
Q ss_pred HhhHhhcccCCC
Q 048313 123 IYQHFRGVHKHA 134 (252)
Q Consensus 123 L~~Hl~~~H~~~ 134 (252)
|..|++..+...
T Consensus 82 l~~H~~~h~~~~ 93 (124)
T 2dlq_A 82 LRLHMVSHTGEM 93 (124)
T ss_dssp HHHHHHHHSSSC
T ss_pred HHHHHHHcCCCC
Confidence 999998766543
No 105
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=78.41 E-value=2.3 Score=27.42 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=37.0
Q ss_pred EeeccccCCCCceeecc-chHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 76 QVTCENEDHGCKEKMSY-SKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
...|+.. ||+..+.. ..+..|++. -.-+|+.|+.++|+.... ...|..|++.
T Consensus 17 ~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~ 71 (72)
T 2epa_A 17 SHICSHP--GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71 (72)
T ss_dssp CEECSST--TTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred ceeCCCC--CCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence 4567753 79887754 457788763 456789998778988774 5778888753
No 106
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=76.62 E-value=1.5 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.5
Q ss_pred ccCcCCCCCCCCcccC-hhhHhhHhhcccCC
Q 048313 104 HARCSCPLAACNFVGS-FNQIYQHFRGVHKH 133 (252)
Q Consensus 104 ~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 133 (252)
-+|+.|+.++|+.... ...|..|++..|..
T Consensus 25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred CCCeECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence 3789999889999885 68899998766764
No 107
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=76.59 E-value=1.1 Score=33.28 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=33.6
Q ss_pred CeeeecCCcccccCCC---CceEEccCCceecccChhhh-cC--CCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTL---LSVAECGNGHIVCNRCCIEL-MN--KCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~---~Pi~qc~~GH~~C~~C~~~~-~~--~CP~Cr~~~~ 61 (252)
+-|.|..|..+| . ...+. ..|.++|..|..++ .. +|..|.++|.
T Consensus 31 ~CF~C~~C~~~L---~~~~~~~~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQL---GDIGTSSYT-KSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCT---TTSEECCEE-ETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcc---cccCCeEEE-ECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 347899999999 5 23343 68999999998875 34 8999999876
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.21 E-value=1.2 Score=33.51 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=25.7
Q ss_pred eCCeeeecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
|.+.-.|.+|...| .. --..|. ||++||+.|...
T Consensus 66 d~~~~~C~~C~~~F---s~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGF---SVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBC---CSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCcc---ccccccccCCCCCeEEChHHhCC
Confidence 44556899999987 42 225787 999999999775
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.19 E-value=1.6 Score=30.24 Aligned_cols=35 Identities=29% Similarity=0.562 Sum_probs=26.3
Q ss_pred EeCCeeeecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 11 LCTTVLHCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 11 ~~~~~l~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
-|.+.-.|.+|...+ .. --..|. ||.+||+.|...
T Consensus 15 ~d~~~~~C~~C~~~F---s~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEF---SISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBC---BTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcc---cCccccccCCCCCCEEChHHhCC
Confidence 355667899999987 32 125787 899999999875
No 110
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.69 E-value=2.2 Score=29.74 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=25.5
Q ss_pred Ceee-ecCCcccccC-CCCceEEcc-CCceecccChhhh
Q 048313 14 TVLH-CFISFSSFIF-TLLSVAECG-NGHIVCNRCCIEL 49 (252)
Q Consensus 14 ~~l~-C~iC~~~l~~-~~~Pi~qc~-~GH~~C~~C~~~~ 49 (252)
..+. ||-|..+++. ...+..+|. ||+.||..|...+
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3344 9999886632 123346897 9999999998866
No 111
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.47 E-value=0.87 Score=29.22 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=25.9
Q ss_pred hhCcccCcCCCCCCCCcccChhhHhhHhhcccCCC
Q 048313 100 KACHHARCSCPLAACNFVGSFNQIYQHFRGVHKHA 134 (252)
Q Consensus 100 ~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~~H~~~ 134 (252)
+.|+.+|+.|+. |+.......|..|++. +...
T Consensus 4 ~~C~~~~~~C~~--C~k~f~~~~L~~H~~~-~~~~ 35 (66)
T 2eod_A 4 GSSGKRTQPCTY--CTKEFVFDTIQSHQYQ-CPRL 35 (66)
T ss_dssp SCCCCCEEECSS--SCCEEEHHHHHHHHHH-CSSS
T ss_pred ccCCCCCeeccc--cCCccCHHHHHHHHHH-cCCc
Confidence 479999999985 8877778899999987 5443
No 112
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=75.14 E-value=1.5 Score=30.43 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=26.0
Q ss_pred eCCeeeecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
|.+.-.|.+|...+ .. --..|. ||++||+.|...
T Consensus 18 d~~~~~C~~C~~~F---s~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVF---TTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBC---CTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCcc---ccchhcccccCCCcEEChHHhCC
Confidence 55667899999987 32 225787 899999999764
No 113
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=74.98 E-value=3.2 Score=26.10 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=37.0
Q ss_pred EeeccccCCCCceeec-cchHHhHhhh-C--cccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 76 QVTCENEDHGCKEKMS-YSKKYDHGKA-C--HHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~-~~~~~~H~~~-C--~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
.+.|+. |+..+. ...+..|+.. - .-.|+.|+. |+... ....|..|++..|.
T Consensus 10 ~~~C~~----C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 10 TYRCKV----CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp EEECTT----TCCEESSHHHHHHHHHHHSSSSCCCEECTT--TCCEESCHHHHHHHHHHHTC
T ss_pred ceECCC----CcchhCCHHHHHHHHHHHcCCCCcCeECCC--CCCccCCHHHHHHHHHHHcC
Confidence 456763 777765 4457788765 3 567889985 88776 46789999988875
No 114
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=74.81 E-value=1.7 Score=34.10 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=33.6
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 61 (252)
+-|.|..|..+| ....+. ..|..+|..|..++ ..+|..|..+|.
T Consensus 32 ~CF~C~~C~~~L---~~~~f~-~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPL---AERCFS-RGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBC---CSCCEE-SSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred ccCccCCCCCcC---CCCCcc-cCCeeeecccccccccccccccccccC
Confidence 447888999888 544454 68899999998764 578999988775
No 115
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=74.45 E-value=1.4 Score=34.91 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=30.5
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 61 (252)
+-|.|..|..+| ....+. ..|..+|..|..++ ..+|..|+.++.
T Consensus 86 ~CF~C~~C~~~L---~~~~f~-~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPL---AERCFS-RGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCC---SSCCEE-ETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred ccCccCCCCCcc---CCCcee-ECCEeeecCccccccccccccCCCccC
Confidence 446778888887 443353 57888888887664 467888887764
No 116
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=73.78 E-value=1.4 Score=30.58 Aligned_cols=38 Identities=21% Similarity=0.667 Sum_probs=27.9
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh--cCCCCCCCcCCc
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL--MNKCPSCRLPIG 61 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~--~~~CP~Cr~~~~ 61 (252)
..||.|..+| .. ..++..|..|-..+ ...||.|..++.
T Consensus 3 ~~CP~C~~~l---~~-----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHAL---ER-----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCC---EE-----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcc---cc-----CCCceECccccccCCCcccCcchhhHHH
Confidence 6899999988 21 34566688887654 258999998875
No 117
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.43 E-value=2.5 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=25.9
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCC
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPS 55 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~ 55 (252)
+-|.|..|..+| ....+.-..|.++|..|..++ ...|..
T Consensus 34 ~CF~C~~C~~~L---~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSL---VGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBC---SSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcC---CCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 447788888888 443344367888888888765 244543
No 118
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.18 E-value=1.3 Score=31.48 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=28.4
Q ss_pred ccchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccCCC
Q 048313 91 SYSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHKHA 134 (252)
Q Consensus 91 ~~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 134 (252)
....+..|+.. -.-+|+.|+. |+... ....|..|++..|...
T Consensus 64 ~~~~l~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~hh~~~ 107 (115)
T 2dmi_A 64 RKRSLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKTKHYQ 107 (115)
T ss_dssp CCCCCCCCCCSCCCCSSCBCSS--SCCBCSSHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHhhccCCCcceECCC--CCCccCCHHHHHHHHHHhCCcc
Confidence 34455566542 2346889975 88776 4688999999877653
No 119
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=72.77 E-value=4.1 Score=28.47 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=30.9
Q ss_pred eeecCCcccccCCCC--ceEEccCCceecccChhhhcCCCCCCCcC
Q 048313 16 LHCFISFSSFIFTLL--SVAECGNGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 16 l~C~iC~~~l~~~~~--Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
-.|..|..-+ .- | ++|.||..||+.=+..-...|+..-+.
T Consensus 26 ~rC~~C~kkv---gl~~~-f~CrCg~~FC~~HRy~e~H~C~fDyK~ 67 (85)
T 1wff_A 26 KHCFLCGKKT---GLATS-FECRCGNNFCASHRYAEAHGCNYDYKS 67 (85)
T ss_dssp CBCSSSCCBC---SSSSC-EECTTCCEECTTTCSTGGGTCCSCCSS
T ss_pred ccchhhCCee---cccCC-eEcCCCCEecccCCCccCCCCcchhhH
Confidence 5799999866 43 5 889999999999886655789875443
No 120
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.64 E-value=4 Score=26.59 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=35.9
Q ss_pred eeccccCCCCceeec-cchHHhHhh-hC-cccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 77 VTCENEDHGCKEKMS-YSKKYDHGK-AC-HHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 77 v~C~~~~~GC~~~~~-~~~~~~H~~-~C-~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
+.|... +|+..+. ...+..|++ .- .-.++.|+.++|+... ....|..|++..+.
T Consensus 8 ~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 8 MPCDFP--GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp EECSST--TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred ccCCCC--CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence 456542 6777765 445677776 22 3467888877888776 46788888876544
No 121
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=72.58 E-value=3.3 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.376 Sum_probs=30.7
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhhcCCCCCCCcC
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
-.|..|..-+ .-.-++|.||..||+.=+..-...|+..-+.
T Consensus 26 nRC~~CrKkv---gL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfl_A 26 NRCFMCRKKV---GLTGFDCRCGNLFCGLHRYSDKHNCPYDYKA 66 (74)
T ss_dssp TBCSSSCCBC---GGGCEECTTSCEECSSSCSTTTTTCCCCGGG
T ss_pred CcChhhCCcc---cccCeecCCCCEechhcCCCccCCCcchhhh
Confidence 3699998865 3334899999999999876655788776443
No 122
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=72.43 E-value=2.5 Score=22.55 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=17.9
Q ss_pred eeEeeccccCCCCceeeccchHHhHhhhC
Q 048313 74 SIQVTCENEDHGCKEKMSYSKKYDHGKAC 102 (252)
Q Consensus 74 ~l~v~C~~~~~GC~~~~~~~~~~~H~~~C 102 (252)
+.+|.||- |...++-..+..|++.|
T Consensus 4 ef~vqcpv----cqq~mpaahin~hldrc 28 (29)
T 3vhs_A 4 EFQVQCPV----CQQMMPAAHINSHLDRC 28 (29)
T ss_dssp -CEEECTT----TCCEEEGGGHHHHHHHH
T ss_pred ceeeeChH----HHHhCcHHHHHHHHhcc
Confidence 34677774 77788888888887766
No 123
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=71.99 E-value=3.7 Score=32.92 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=30.0
Q ss_pred eecCCcccccCC--CCceEEcc-CCceecccChhh-------h-------cCCCCCCCcCCc
Q 048313 17 HCFISFSSFIFT--LLSVAECG-NGHIVCNRCCIE-------L-------MNKCPSCRLPIG 61 (252)
Q Consensus 17 ~C~iC~~~l~~~--~~Pi~qc~-~GH~~C~~C~~~-------~-------~~~CP~Cr~~~~ 61 (252)
.||+|..+.-+. ..++.||. |...|=..|..- + ...||.|+..-+
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 499999987221 12488997 776665666432 1 368999998654
No 124
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=71.78 E-value=3 Score=29.23 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=41.0
Q ss_pred eeeEeeccccCCCCceee--ccchHHhHhhhCcccCcCCCCCCCCcccC-hhhHhhHhhcccCC
Q 048313 73 ESIQVTCENEDHGCKEKM--SYSKKYDHGKACHHARCSCPLAACNFVGS-FNQIYQHFRGVHKH 133 (252)
Q Consensus 73 ~~l~v~C~~~~~GC~~~~--~~~~~~~H~~~C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 133 (252)
+.-.+.|+. |+..+ ....+..|++...-+|+.|+. |+.... ...|..|+...|..
T Consensus 31 ~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~--Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 31 DKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH--CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS--SCCCCSSHHHHHHHHHHHTCC
T ss_pred CCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC--CCCeeCCHHHHHHHhHHhcCC
Confidence 445678885 99888 567788998755677899975 887764 57899995566753
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.70 E-value=2.4 Score=29.33 Aligned_cols=36 Identities=25% Similarity=0.534 Sum_probs=25.6
Q ss_pred eCCeeeecCCcccccCCCCceEEcc-CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~ 48 (252)
|.+.-.|.+|...+.- ..--..|. ||.+||+.|...
T Consensus 11 d~~~~~C~~C~~~F~~-~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSV-LKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCS-SSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCcccc-chhhhhhcCCCcEEChhhcCC
Confidence 5556789999988711 11225787 899999999764
No 126
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=71.66 E-value=5.1 Score=26.09 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=37.7
Q ss_pred EeeccccCCCCceeec-cchHHhHhh-hCcc--cCcCCCCCCCCccc-ChhhHhhHhhcccCCC
Q 048313 76 QVTCENEDHGCKEKMS-YSKKYDHGK-ACHH--ARCSCPLAACNFVG-SFNQIYQHFRGVHKHA 134 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~-~~~~~~H~~-~C~~--~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 134 (252)
.+.|+. |+..+. ...+..|+. .-.- .++.|+. |+... ....|..|++..|...
T Consensus 15 ~~~C~~----C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 15 PYECYI----CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp SEECTT----TCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCCS
T ss_pred CeECCC----cCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCCC
Confidence 456764 777665 356778875 3332 6789985 98876 4688999999998854
No 127
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=71.13 E-value=2.4 Score=28.35 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=20.1
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChh
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCI 47 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~ 47 (252)
++.|.||+|..+| . +.=..|-.+|..|..
T Consensus 6 L~iL~CP~ck~~L---~---~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 6 LDILVCPVTKGRL---E---YHQDKQELWSRQAKL 34 (68)
T ss_dssp SCCCBCSSSCCBC---E---EETTTTEEEETTTTE
T ss_pred hhheECCCCCCcC---e---EeCCCCEEEcCCCCc
Confidence 4668899999998 3 332457777776643
No 128
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=70.99 E-value=1.6 Score=32.41 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=35.1
Q ss_pred CCeeeecCCcccccCCCC--ceEEccCCceecccChhhhc-C--CCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLL--SVAECGNGHIVCNRCCIELM-N--KCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~--Pi~qc~~GH~~C~~C~~~~~-~--~CP~Cr~~~~ 61 (252)
++-|.|..|..+| .. ..+.-..|..+|..|..++. . +|..|.+++.
T Consensus 27 ~~CF~C~~C~~~L---~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRL---GEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBC---SSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCcc---ccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 4558899999999 53 22444789999999988763 4 7999999874
No 129
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.83 E-value=2.4 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=19.9
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
+|+.|+.++|+.... ...|..|++.
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 578998778998874 6788899865
No 130
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=70.78 E-value=2.4 Score=28.30 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=20.1
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChh
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCI 47 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~ 47 (252)
++.|.||+|..+| . +.=..|..+|..|..
T Consensus 8 LeiL~CP~ck~~L---~---~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 8 LEVLACPKDKGPL---R---YLESEQLLVNERLNL 36 (67)
T ss_dssp TCCCBCTTTCCBC---E---EETTTTEEEETTTTE
T ss_pred HHHhCCCCCCCcC---e---EeCCCCEEEcCCCCc
Confidence 4568899999998 2 332457777777643
No 131
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=70.19 E-value=2.4 Score=29.84 Aligned_cols=36 Identities=22% Similarity=0.566 Sum_probs=25.6
Q ss_pred eCCeeeecCCcccccCCCCceEEcc-CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~ 48 (252)
|.+.-.|.+|...+.- ..--..|. ||++||..|...
T Consensus 17 d~~~~~C~~C~~~F~~-~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTF-TKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGGCCBCTTTCCBCCS-SSCCEECTTTCCEECGGGSCE
T ss_pred cccCCcCcCCCCcccc-hhhCccccCCCCEECCcccCC
Confidence 4455679999987711 11226787 899999999775
No 132
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=69.78 E-value=2.7 Score=35.19 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=34.6
Q ss_pred CeeeecCCcccccCCCCceEEcc-CCceecccChhhh-----cCCCCCCCcCCc
Q 048313 14 TVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIEL-----MNKCPSCRLPIG 61 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~-----~~~CP~Cr~~~~ 61 (252)
+...|.+|.+++ .+ =..|. |++.+=..|+.++ ...||.|+.+..
T Consensus 179 ~i~~C~iC~~iv---~~-g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLL---IQ-GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBC---SS-CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHH---hC-CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467899999999 54 46787 7888888888774 258999998764
No 133
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=69.68 E-value=7.6 Score=26.35 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=35.7
Q ss_pred eeeEeeccccCCCCceeecc-chHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 73 ESIQVTCENEDHGCKEKMSY-SKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 73 ~~l~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
..-.+.|+.. +|+..+.. ..+..|+.. -.-.++.|+. |+... ....|..|++..
T Consensus 42 ~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 42 GEKPYKCTWE--GCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp CCCCEECCSS--SCCCEESSHHHHHHHHHHHTSCCSCBCSS--SCCBCSSHHHHHHHHHHH
T ss_pred CCCCeeCCCC--CCCCccCCHHHHHHHHHHhCCCCCeECCC--CcCccCCHHHHHHHHHHh
Confidence 3445678642 68877653 456788763 3456788975 88766 467888997653
No 134
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=69.63 E-value=2.2 Score=26.44 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=20.8
Q ss_pred EeCCeeeecCCcc-cccCCCCceEEccCCceecccChh
Q 048313 11 LCTTVLHCFISFS-SFIFTLLSVAECGNGHIVCNRCCI 47 (252)
Q Consensus 11 ~~~~~l~C~iC~~-~l~~~~~Pi~qc~~GH~~C~~C~~ 47 (252)
|+...+.||.|.. .| ++--..|.++|..|-.
T Consensus 1 m~~~~~~CP~C~~~~l------~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 1 MVNKQKVCPACESAEL------IYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSSCCSCTTTSCCCE------EEETTTTEEEESSSCC
T ss_pred CCCccEeCcCCCCcce------EEcCCCCeEECcccCC
Confidence 3456688999977 55 3333467788888854
No 135
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=69.54 E-value=4.4 Score=26.95 Aligned_cols=74 Identities=16% Similarity=0.331 Sum_probs=36.4
Q ss_pred CCCC--CCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHh
Q 048313 52 KCPS--CRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIY 124 (252)
Q Consensus 52 ~CP~--Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~ 124 (252)
.|+. |...+....... +..-.+.-.+.|+.. +|+..+. ...+..|+.. -.-.++.|+. |+... ...+|.
T Consensus 7 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~ 82 (89)
T 2wbs_A 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWD--GCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLA 82 (89)
T ss_dssp ECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCST--TTCCEESSHHHHHHHHHHHHCCCCEECSS--SSCEESSHHHHH
T ss_pred eCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCC--CCCCccCCHHHHHHHHHHcCCCCCccCCC--CCcccCCHHHHH
Confidence 5666 766554222211 111222334566531 5666554 3345566542 2335667764 66655 346677
Q ss_pred hHhhc
Q 048313 125 QHFRG 129 (252)
Q Consensus 125 ~Hl~~ 129 (252)
.|++.
T Consensus 83 ~H~~~ 87 (89)
T 2wbs_A 83 LHMKR 87 (89)
T ss_dssp HHGGG
T ss_pred HHHHh
Confidence 77653
No 136
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.21 E-value=1.7 Score=31.09 Aligned_cols=41 Identities=32% Similarity=0.749 Sum_probs=31.3
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh---cCCCCCCCcCCc
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL---MNKCPSCRLPIG 61 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 61 (252)
+.|..|-... +. ...| +.|-.|..|+..+ ...||+|..++.
T Consensus 29 ~nCKsCWf~~---k~-LV~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFEN---KG-LVEC-NNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSCC---SS-EEEC-SSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred ccChhhcccc---CC-eeee-cchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 5688887666 54 4555 6799999999875 478999999874
No 137
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.17 E-value=3.7 Score=28.77 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=37.0
Q ss_pred eeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhHhhcccC
Q 048313 74 SIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQHFRGVHK 132 (252)
Q Consensus 74 ~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 132 (252)
...+.|+. |...+. ...+..|+.. -.-.++.|+. |+.... ...|..|++..|.
T Consensus 35 ~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 35 LRPYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp CCSEECTT----TSCEESSSHHHHHHHTTTCCCCCEECSS--SCCEESCHHHHHHHHHHHHH
T ss_pred CcCccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCCC--CcchhcCHHHHHHHHHHccc
Confidence 34567874 877665 4557788764 2346788985 887764 6889999987665
No 138
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=69.06 E-value=5 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=36.4
Q ss_pred eeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 73 ESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 73 ~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
+...+.|+. |+..+. ...+..|+.. -.-.++.|+. |+... ....|..|++..+.
T Consensus 31 ~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~ 87 (90)
T 1a1h_A 31 GQKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLR 87 (90)
T ss_dssp CCCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHHHHHHHGGGGC
T ss_pred CCCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC--CCchhCCHHHHHHHHHHhcc
Confidence 344567874 877665 3456788763 2446788985 88776 46789999886543
No 139
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=68.97 E-value=2.2 Score=32.08 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=49.2
Q ss_pred CCCCCCCcCCcccchhHHHhhe---eeeE--------eeccccCCCCceeec-cchHHhHhhhC-cccCcCCCCCCCCcc
Q 048313 51 NKCPSCRLPIGHSRSIAMEKVL---ESIQ--------VTCENEDHGCKEKMS-YSKKYDHGKAC-HHARCSCPLAACNFV 117 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~~le~~~---~~l~--------v~C~~~~~GC~~~~~-~~~~~~H~~~C-~~~p~~CP~~gC~~~ 117 (252)
..|+.|...+....+...-... .... ..|+. |+..+. ...+..|++.= .-.++.|+.++|+..
T Consensus 26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~ 101 (155)
T 2rpc_A 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR----EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI 101 (155)
T ss_dssp SSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTT----SSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred cccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCC----cccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence 5799998876543332211111 1100 34553 776654 44577887642 346789998789988
Q ss_pred c-ChhhHhhHhhcccCCCC
Q 048313 118 G-SFNQIYQHFRGVHKHAA 135 (252)
Q Consensus 118 g-~~~~L~~Hl~~~H~~~~ 135 (252)
. ....|..|++..+....
T Consensus 102 f~~~~~L~~H~~~h~~~~~ 120 (155)
T 2rpc_A 102 FARSENLKIHKRTHTGEKP 120 (155)
T ss_dssp ESCHHHHHHHHTTTCSSCS
T ss_pred cCCHHHHHHHHHhhCCCCC
Confidence 7 46889999987655433
No 140
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=68.67 E-value=5.3 Score=20.61 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=18.6
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
+|+.|+.+.|+.... ...|..|++.
T Consensus 1 kp~~C~~~~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred CCcCCcCCCCCcccCCHhHHHHHHHH
Confidence 367887667988764 6789999875
No 141
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=68.66 E-value=1.2 Score=35.71 Aligned_cols=46 Identities=24% Similarity=0.443 Sum_probs=34.1
Q ss_pred CCeeeecCCcccccCCCC--ceEEccCCceecccChhhhc-C--CCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLL--SVAECGNGHIVCNRCCIELM-N--KCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~--Pi~qc~~GH~~C~~C~~~~~-~--~CP~Cr~~~~ 61 (252)
.+-|.|..|..+| .. ..+.-..|..+|..|..++. . +|..|.+++.
T Consensus 30 ~~CF~C~~C~~~L---~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQL---GDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBH---HHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCccc---ccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 3457899999998 54 23334789999999988753 3 5999998764
No 142
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=67.08 E-value=3.4 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=22.3
Q ss_pred eecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 17 HCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 17 ~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
.|.+|...+ .. --..|. ||.+||+.|...
T Consensus 13 ~C~~C~~~F---~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKF---SLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBC---BTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCcc---CCccccccCCCCCEEEcccccCC
Confidence 799999887 32 225787 899999999764
No 143
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=67.04 E-value=3.1 Score=28.52 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.2
Q ss_pred CeeeecC--CcccccC-CCCceEEc------cCCceecccChhhhcCCCCCCCcC
Q 048313 14 TVLHCFI--SFSSFIF-TLLSVAEC------GNGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 14 ~~l~C~i--C~~~l~~-~~~Pi~qc------~~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
+..-||. |...+.- ...+..+| .||+.||..|...+. . -.|...
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH-~-~~C~~~ 76 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH-E-GECSAV 76 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC-S-SCSSSC
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc-C-Cccccc
Confidence 4556998 9887631 11234679 699999999999884 3 556543
No 144
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=66.86 E-value=4.6 Score=31.40 Aligned_cols=77 Identities=18% Similarity=0.354 Sum_probs=42.9
Q ss_pred CCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeecc-chHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhH
Q 048313 52 KCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMSY-SKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQH 126 (252)
Q Consensus 52 ~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~H 126 (252)
.|+.|...+....+.. +..-.+...+.|+. |+..+.. ..+..|++. -.-.|+.|+. |+.... ..+|..|
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H 152 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTH 152 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC--CCcccCCHHHHHHH
Confidence 5888877654322211 22222334566763 7776643 456677653 2345677764 776653 5677778
Q ss_pred hhcccCCC
Q 048313 127 FRGVHKHA 134 (252)
Q Consensus 127 l~~~H~~~ 134 (252)
++..+...
T Consensus 153 ~~~H~~~~ 160 (190)
T 2i13_A 153 QRTHTGEK 160 (190)
T ss_dssp HHHHHCCC
T ss_pred HHhcCCCC
Confidence 77655443
No 145
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=66.16 E-value=6.8 Score=20.27 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=18.9
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+.+.|+... ....|..|++..
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~H 28 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHHc
Confidence 46788765788776 457889998753
No 146
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.03 E-value=2.5 Score=29.31 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=26.7
Q ss_pred eCCeeeecCCcccccCCCC-ceEEcc--CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLL-SVAECG--NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~-Pi~qc~--~GH~~C~~C~~~ 48 (252)
+...|.|.+|.+-| .+ -..||+ .+|.||-.|-..
T Consensus 12 ~~a~l~CtlC~erL---EdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 12 NSGPLCCTICHERL---EDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCSCCCSSSCSCC---SSTTSEECSSCSSCEECHHHHHH
T ss_pred CCCeeEeecchhhh---ccCceeeCCCccCCeeeccccHH
Confidence 34668999999999 44 347998 589999999653
No 147
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=65.61 E-value=3.6 Score=24.89 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=28.8
Q ss_pred Cceeec-cchHHhHhhhC-cccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 86 CKEKMS-YSKKYDHGKAC-HHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 86 C~~~~~-~~~~~~H~~~C-~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
|+..+. ...+..|++.- .-.|+.|+. |+... ....|..|++..|.
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECSS--SSCEESSHHHHHHHHHHHC-
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCCC--CcchhCCHHHHHHHHHHhcC
Confidence 555543 33456666532 246788975 88775 46789999987763
No 148
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=64.99 E-value=3.6 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=19.5
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChh
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCI 47 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~ 47 (252)
++.|.||+|..+| . +.=..|-.+|..|..
T Consensus 6 L~iL~CP~ck~~L---~---~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 6 LDILVCPVCKGRL---E---FQRAQAELVCNADRL 34 (70)
T ss_dssp CCCCBCTTTCCBE---E---EETTTTEEEETTTTE
T ss_pred hhheECCCCCCcC---E---EeCCCCEEEcCCCCc
Confidence 4668899999998 3 332356677766643
No 149
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.19 E-value=3.4 Score=30.88 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=23.6
Q ss_pred eCCeeeecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
|.+.-.|..|...+ .. --..|. ||.+||+.|..+
T Consensus 16 d~~~~~C~~C~~~F---s~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 16 TGLEPSCKSCGAHF---ANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp ----CCCTTTCCCC---SSGGGCEECTTTCCEECGGGEEC
T ss_pred ccccCcccCcCCcc---ccccccccCCCCCCeeCHHHhCC
Confidence 44556799999987 42 225787 899999999775
No 150
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=63.83 E-value=6.3 Score=27.73 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=25.4
Q ss_pred eEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhHhh
Q 048313 75 IQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQHFR 128 (252)
Q Consensus 75 l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~Hl~ 128 (252)
..+.|+. |+..+. ...+..|++. -.-.++.|+.+.|+.... ..+|..|++
T Consensus 65 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~ 117 (119)
T 2jp9_A 65 KPFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117 (119)
T ss_dssp CCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred CCccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHh
Confidence 3455653 665553 3345556542 223456664334665553 456666654
No 151
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=63.56 E-value=3.3 Score=27.71 Aligned_cols=28 Identities=11% Similarity=0.368 Sum_probs=18.6
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChh
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCI 47 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~ 47 (252)
+.|.||+|..+| . +.=..|-.+|..|..
T Consensus 7 ~iL~CP~ck~~L---~---~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 7 EILVCPLCKGPL---V---FDKSKDELICKGDRL 34 (68)
T ss_dssp EECBCTTTCCBC---E---EETTTTEEEETTTTE
T ss_pred hheECCCCCCcC---e---EeCCCCEEEcCCCCc
Confidence 567899999998 2 332356666666643
No 152
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.36 E-value=3 Score=27.18 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=16.3
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL 49 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~ 49 (252)
|.|..|..+| ....+.-..|.++|..|..++
T Consensus 32 F~C~~C~~~L---~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQL---SGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBC---TTSCCEESSSSEECHHHHHHH
T ss_pred CccCCCCCcC---CcCceEeeCCeEECHHHHHHH
Confidence 5566666666 332232245666666665543
No 153
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=63.35 E-value=2.6 Score=28.44 Aligned_cols=41 Identities=10% Similarity=0.198 Sum_probs=20.6
Q ss_pred CeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCC
Q 048313 14 TVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCR 57 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr 57 (252)
+=|.|..|..+| ..-.+.-..|.++|..|..++ ..+|-.|.
T Consensus 33 ~CF~C~~C~~~L---~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 33 CCFLCMVCRKNL---DSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSEECSSSCCEE---CSSCCEEETTEEECSHHHHHHCC-------
T ss_pred ccCccCCCCCCC---CCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 446677777777 332233356777777777664 34555554
No 154
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=63.03 E-value=0.4 Score=32.77 Aligned_cols=76 Identities=12% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCCCcCCcccchh--HHHhheeeeEeeccccCCCCceeec-cchHHhHhhhCcccCcCCCCCCCCccc-ChhhHhhHh
Q 048313 52 KCPSCRLPIGHSRSI--AMEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKACHHARCSCPLAACNFVG-SFNQIYQHF 127 (252)
Q Consensus 52 ~CP~Cr~~~~~~r~~--~le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C~~~p~~CP~~gC~~~g-~~~~L~~Hl 127 (252)
.|+.|...+....+. -+..-.+.-.+.|+. |+..+. ...+..|.+.-.-.++.|+ .|+... ....|..|+
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~--~C~~~f~~~~~L~~H~ 78 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILED--KVEELLSKNYHLENEV 78 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHH--HHHHHHHHHhhhHHHH
Confidence 577777665432221 122223344577874 877765 4557788765444667776 477655 457899999
Q ss_pred hcccCC
Q 048313 128 RGVHKH 133 (252)
Q Consensus 128 ~~~H~~ 133 (252)
+..|..
T Consensus 79 ~~~h~~ 84 (88)
T 1llm_C 79 ARLKKL 84 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 155
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=62.91 E-value=7.1 Score=27.42 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCCC--CCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhH
Q 048313 51 NKCPS--CRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQI 123 (252)
Q Consensus 51 ~~CP~--Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L 123 (252)
..|+. |...+....+.. +..-.+.-.+.|++. +|+..+. ...+..|++. -.-.++.|+. |+... ....|
T Consensus 7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l 82 (119)
T 2jp9_A 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFK--DCERRFSRSDQLKRHQRRHTGVKPFQCKT--CQRKFSRSDHL 82 (119)
T ss_dssp BCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCST--TCCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHH
T ss_pred eeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCC--CCcCccCCHHHHHHHHHHcCCCCCccCCc--cCchhCCHHHH
Confidence 35765 877665332221 222223345778742 5888775 4567788764 2346788975 88776 46889
Q ss_pred hhHhhcccCCCC
Q 048313 124 YQHFRGVHKHAA 135 (252)
Q Consensus 124 ~~Hl~~~H~~~~ 135 (252)
..|++..+....
T Consensus 83 ~~H~~~h~~~~~ 94 (119)
T 2jp9_A 83 KTHTRTHTGEKP 94 (119)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHhcCCCC
Confidence 999987665443
No 156
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=62.64 E-value=4 Score=30.48 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=47.5
Q ss_pred CCCCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeecc-chHHhHhhhC-cccCcCCCCCCCCccc-ChhhHhhH
Q 048313 52 KCPSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMSY-SKKYDHGKAC-HHARCSCPLAACNFVG-SFNQIYQH 126 (252)
Q Consensus 52 ~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~~-~~~~~H~~~C-~~~p~~CP~~gC~~~g-~~~~L~~H 126 (252)
.|+.|...+....+.. +..=.+.-.+.|+. |+..+.. ..+..|+..= .-.|+.|+. |+... ....|..|
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H 97 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA--CGKSFINYQFMSSH 97 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS--SCCEESSHHHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC--CCCCcCCHHHHHHH
Confidence 5777776654332221 11112334567874 8877654 4677887642 236788975 88776 46889999
Q ss_pred hhcccCC
Q 048313 127 FRGVHKH 133 (252)
Q Consensus 127 l~~~H~~ 133 (252)
++..|..
T Consensus 98 ~~~hh~~ 104 (133)
T 2lt7_A 98 IKSVHSQ 104 (133)
T ss_dssp HHHHTCC
T ss_pred hHHhcCC
Confidence 9998864
No 157
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=62.13 E-value=4.3 Score=32.34 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=24.5
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCCcCC
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCRLPI 60 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~~~ 60 (252)
|.|..|..+| ..--+.-..|.++|..|..++ ..+|..|....
T Consensus 143 F~C~~C~~~L---~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 143 FRCAKCGKSL---ESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp CBCTTTCCBC---CSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred CCccccCCCC---CCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 5666666666 332233346677777776654 35666666553
No 158
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=61.82 E-value=9.5 Score=25.82 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=39.7
Q ss_pred EeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccCC
Q 048313 76 QVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHKH 133 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 133 (252)
.+.|++. +|+..+. ...+..|++. -.-.++.|+...|+... ....|..|++..+..
T Consensus 15 ~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~ 73 (100)
T 2ebt_A 15 IHYCDYP--GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73 (100)
T ss_dssp CEECCSS--SCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSC
T ss_pred ceEcCCC--CCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC
Confidence 4567753 6888775 4567788874 34467899877898876 468899999875554
No 159
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.68 E-value=6.8 Score=25.10 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=35.5
Q ss_pred EeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhHhhcccCCC
Q 048313 76 QVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQHFRGVHKHA 134 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~ 134 (252)
.+.|+. |...+. ...+..|++. -.-.|+.|+. |+.... ...|..|++..+..+
T Consensus 14 ~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~ 69 (72)
T 1x6e_A 14 PYGCVE----CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSGP 69 (72)
T ss_dssp CEECSS----SCCEESSHHHHHHHHHGGGCSCCEECSS--SCCEESSHHHHHHHHHHHHSSS
T ss_pred CccCCC----CCCccCCHHHHHHHHHhcCCCCCeECCC--CCcccCCHHHHHHHHHhcCCCC
Confidence 456764 777664 3456778763 2346788985 887764 678999988765543
No 160
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=61.55 E-value=5.8 Score=30.77 Aligned_cols=79 Identities=16% Similarity=0.361 Sum_probs=50.0
Q ss_pred CCCCCCCcCCcccchh--HHHhheeeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhh
Q 048313 51 NKCPSCRLPIGHSRSI--AMEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQ 125 (252)
Q Consensus 51 ~~CP~Cr~~~~~~r~~--~le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~ 125 (252)
..|+.|...+....+. -+..-.+...+.|+. |+..+. ...+..|+.. -.-.++.|+. |+... ...+|..
T Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~ 123 (190)
T 2i13_A 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE----CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRA 123 (190)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECTT--TCCEESSHHHHHH
T ss_pred ccCCCcCchhCCHHHHHHHHHhcCCCCCccCcc----cCCccCCHHHHHHHHHhcCCCCCCcCCC--CCCccCCHHHHHH
Confidence 4699998876533222 122223345677874 888765 4567788763 3456788975 88776 4678999
Q ss_pred HhhcccCCCC
Q 048313 126 HFRGVHKHAA 135 (252)
Q Consensus 126 Hl~~~H~~~~ 135 (252)
|++..+....
T Consensus 124 H~~~h~~~~~ 133 (190)
T 2i13_A 124 HQRTHTGEKP 133 (190)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHhCCCCC
Confidence 9887665433
No 161
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.41 E-value=3.8 Score=26.65 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=13.3
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIE 48 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~ 48 (252)
|.|..|..+| ....+.-..|.++|..|..+
T Consensus 32 F~C~~C~~~L---~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 32 FVCVTCSKKL---AGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp TBCTTTCCBC---TTSCEEECSSCEEEHHHHHH
T ss_pred CEECCCCCCC---CCCccEeECCEEECHHHhHH
Confidence 4455555555 32222223455555555444
No 162
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=61.28 E-value=12 Score=26.59 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCCC--CCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhhhC-cccCcCCCCCCCCccc-ChhhH
Q 048313 51 NKCP--SCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGKAC-HHARCSCPLAACNFVG-SFNQI 123 (252)
Q Consensus 51 ~~CP--~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~C-~~~p~~CP~~gC~~~g-~~~~L 123 (252)
..|| .|...+....... +..- +.-...|+. |+..+. ...+..|+..- .-.++.|+..+|+... ....|
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l 80 (124)
T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE----CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 80 (124)
T ss_dssp EECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTT----TCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCC----CCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence 3688 7887664332221 1111 344567874 888775 45678888742 3467889877898876 46889
Q ss_pred hhHhhcccCCC
Q 048313 124 YQHFRGVHKHA 134 (252)
Q Consensus 124 ~~Hl~~~H~~~ 134 (252)
..|++..+...
T Consensus 81 ~~H~~~h~~~~ 91 (124)
T 1ubd_C 81 RTHVRIHTGDR 91 (124)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCC
Confidence 99988765543
No 163
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.24 E-value=6.1 Score=25.71 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=37.2
Q ss_pred EeeccccCCCCceeecc-chHHhHhhhCc----ccCcCCCCCCCCcccC-hhhHhhHhhcccCCCC
Q 048313 76 QVTCENEDHGCKEKMSY-SKKYDHGKACH----HARCSCPLAACNFVGS-FNQIYQHFRGVHKHAA 135 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~-~~~~~H~~~C~----~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~~ 135 (252)
.+.|.. |+..+.. ..+..|++.=. -.++.|+. |+.... ...|..|++..|....
T Consensus 7 ~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~ 66 (78)
T 2d9h_A 7 GLQCEI----CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALL 66 (78)
T ss_dssp CEECSS----SCCEESSHHHHHHHHHHHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTTTS
T ss_pred CeECCC----CCCeeCCHHHHHHHHHHhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCCCC
Confidence 355664 7776643 45667766432 46889985 988774 6889999988888643
No 164
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=61.06 E-value=5.9 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=24.0
Q ss_pred CeeeecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 14 TVLHCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
+.-.|.+|...+ .. --..|. ||.+||..|...
T Consensus 8 ~~~~C~~C~~~F---~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKF---TLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBC---CSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcc---cCccccccCCCCCCEEChhHcCC
Confidence 445799999887 32 225787 899999999764
No 165
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=60.98 E-value=6.5 Score=30.50 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCC--CCCCcCCcccchhH--HHhheeeeEeeccccCCCCceeec-cchHHhHhh-hC--cccCcCCCCCCCCccc-Chh
Q 048313 51 NKC--PSCRLPIGHSRSIA--MEKVLESIQVTCENEDHGCKEKMS-YSKKYDHGK-AC--HHARCSCPLAACNFVG-SFN 121 (252)
Q Consensus 51 ~~C--P~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~-~C--~~~p~~CP~~gC~~~g-~~~ 121 (252)
..| +.|...+....+.. +..-.+...+.|+.. +|+..+. ...+..|.+ .- .-.++.|+.+.|+... ...
T Consensus 43 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~ 120 (190)
T 1tf6_A 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD--GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120 (190)
T ss_dssp SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSS--SCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHH
T ss_pred ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCC--CCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHH
Confidence 478 78988765333222 222223345667631 5888765 456778873 22 2456788655788776 467
Q ss_pred hHhhHhhcccCCC
Q 048313 122 QIYQHFRGVHKHA 134 (252)
Q Consensus 122 ~L~~Hl~~~H~~~ 134 (252)
.|..|++..+...
T Consensus 121 ~L~~H~~~H~~~~ 133 (190)
T 1tf6_A 121 QLKVHQFSHTQQL 133 (190)
T ss_dssp HHHHHHGGGSSSC
T ss_pred HHHHHHHHhCCCC
Confidence 8899988655443
No 166
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=60.72 E-value=2.7 Score=27.14 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=29.5
Q ss_pred CCeeeecCCcccccCCCCceE-EccCCc---eecccChhhh-----cCCCCCCCcCCc
Q 048313 13 TTVLHCFISFSSFIFTLLSVA-ECGNGH---IVCNRCCIEL-----MNKCPSCRLPIG 61 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~-qc~~GH---~~C~~C~~~~-----~~~CP~Cr~~~~ 61 (252)
.+.-.|.||+... ..|+. -|.|.+ .|=..|+.+| ...||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3556899998765 44432 244433 4545687775 257999998764
No 167
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.39 E-value=8.7 Score=24.34 Aligned_cols=53 Identities=19% Similarity=0.432 Sum_probs=36.6
Q ss_pred EeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccCCC
Q 048313 76 QVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHKHA 134 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 134 (252)
.+.|+. |+..+. ...+..|++. -.-.++.|+. |+... ....|..|++..|...
T Consensus 9 ~~~C~~----C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~ 64 (70)
T 1x5w_A 9 PEKCSE----CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGDM 64 (70)
T ss_dssp SEECSS----SSCEESSHHHHHHHHGGGCCSCSEECSS--SSCEESSHHHHHHHHHHHHSSS
T ss_pred CeECCC----CCcccCCHHHHHHHHHHcCCCCCEeCCC--CCCccCCHHHHHHHHHHHhCCC
Confidence 356663 777665 4457788764 2446788985 88776 4688999998877643
No 168
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.58 E-value=4.9 Score=32.91 Aligned_cols=30 Identities=20% Similarity=0.565 Sum_probs=23.2
Q ss_pred eeecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 16 LHCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 16 l~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
-.|.+|...+ .. --..|. ||++||+.|...
T Consensus 162 ~~C~~C~~~F---~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEF---TFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBC---CSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCcc---CCcccccccCCcCCEEChHHhCC
Confidence 4799999887 32 125787 899999999765
No 169
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=59.18 E-value=8.7 Score=34.13 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=31.3
Q ss_pred EeCCeeeecCCcccccCCCCceEEcc-CCceecccChhhhcCCCCC
Q 048313 11 LCTTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELMNKCPS 55 (252)
Q Consensus 11 ~~~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~~~CP~ 55 (252)
.+...-.|..|...+++-..--++|. ||..+|+.|..++. .|+.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~~ 397 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCGR 397 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC--
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCCC
Confidence 45566789999998832123447898 99999999999885 3543
No 170
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=58.97 E-value=5.4 Score=26.72 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=26.7
Q ss_pred eccchHHhHhhhCcccCcCCCCCCCCcccChhhHhhHhhc
Q 048313 90 MSYSKKYDHGKACHHARCSCPLAACNFVGSFNQIYQHFRG 129 (252)
Q Consensus 90 ~~~~~~~~H~~~C~~~p~~CP~~gC~~~g~~~~L~~Hl~~ 129 (252)
+...|.+-|+.+|.|. -||+ |.-+.+.+-|..|...
T Consensus 16 vn~~DqelHdlnCs~N--iCPY--C~nRls~eGl~RHV~~ 51 (77)
T 2l7x_A 16 VNAIDAEMHDLNCSYN--ICPY--CASRLTSDGLARHVTQ 51 (77)
T ss_dssp SSHHHHHHHHHHHTTT--CCTT--TCCCCCTTTHHHHHTT
T ss_pred ccHHHHHHHHcCCCcc--cChh--hhccCCccchhhhccc
Confidence 4455667888888887 4675 7778888888888653
No 171
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=58.71 E-value=12 Score=25.69 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=38.0
Q ss_pred eeccccCCCCceeecc-chHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccCC
Q 048313 77 VTCENEDHGCKEKMSY-SKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHKH 133 (252)
Q Consensus 77 v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 133 (252)
..|+. |+..+.. ..+..|++. =.-+|+.|+. |+... ....|..|++..|..
T Consensus 29 h~C~~----Cgk~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 29 HLCPV----CGESFASKGAQERHLRLLHAAQVFPCKY--CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp EECTT----SCCEESSHHHHHHHHHTTSCSSSEECTT--SSCEESSHHHHHHHHHTTCTT
T ss_pred EECCC----CCCCcCcHHHHhhhhhhccCCCccCCCC--CCCEeCCHHHHHHhCcccCcC
Confidence 45764 8877654 567888863 3457899975 98876 578999999988874
No 172
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.61 E-value=4.3 Score=26.53 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=13.3
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIE 48 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~ 48 (252)
|.|..|..+| ...-+.-..|.++|..|..+
T Consensus 34 F~C~~C~~~L---~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 34 FLCSGCEQPL---GSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CBCTTTCCBT---TTSCEEEETTEEEEHHHHHH
T ss_pred CeECCCCCcC---CCCccCCcCCeEECHHHHHH
Confidence 4455555555 22112223455555555444
No 173
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=58.20 E-value=8.1 Score=29.91 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=48.3
Q ss_pred CCC--CCCcCCcccchhH--HHhh--eeeeEeeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCcccC-hhh
Q 048313 52 KCP--SCRLPIGHSRSIA--MEKV--LESIQVTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVGS-FNQ 122 (252)
Q Consensus 52 ~CP--~Cr~~~~~~r~~~--le~~--~~~l~v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~ 122 (252)
.|+ .|...+....+.. +.+. ...-.+.|+. ..|+..+. ...+..|++. -.-.|+.|+..+|+.... ...
T Consensus 74 ~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~ 151 (190)
T 1tf6_A 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF--ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR 151 (190)
T ss_dssp ECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECS--SSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHH
T ss_pred eCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCC--CCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHH
Confidence 688 7887665332221 1111 1223466732 15888765 4567788774 334678998778988764 588
Q ss_pred HhhHhhcccC
Q 048313 123 IYQHFRGVHK 132 (252)
Q Consensus 123 L~~Hl~~~H~ 132 (252)
|..|++..+.
T Consensus 152 L~~H~~~H~~ 161 (190)
T 1tf6_A 152 LKRHEKVHAG 161 (190)
T ss_dssp HHHHHTSSCS
T ss_pred HHHHHHHhCC
Confidence 9999886443
No 174
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.89 E-value=3.4 Score=27.11 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=16.2
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL 49 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~ 49 (252)
|.|..|..+| ....+.-..|.++|..|..++
T Consensus 36 F~C~~C~~~L---~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 36 FNCKKCSLSL---VGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp CBCSSSCCBC---TTSCCEECSSSEECHHHHHTC
T ss_pred CEeccCCCcC---CCCccEeECCEEEChhHcCcc
Confidence 5566666666 332232245666666665543
No 175
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=57.62 E-value=3.6 Score=27.62 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=18.6
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChh
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCI 47 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~ 47 (252)
++.|.||+|..+| . +.=..|-.+|..|..
T Consensus 6 LeiL~CP~ck~~L---~---~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 6 LDILACPICKGPL---K---LSADKTELISKGAGL 34 (69)
T ss_dssp GGTCCCTTTCCCC---E---ECTTSSEEEETTTTE
T ss_pred HhheeCCCCCCcC---e---EeCCCCEEEcCCCCc
Confidence 3567899999998 3 222346666666643
No 176
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.69 E-value=3.9 Score=26.71 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=15.2
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL 49 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~ 49 (252)
|.|..|..+| ..-.+.-..|.++|..|..++
T Consensus 34 F~C~~C~~~L---~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPI---GTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCC---CSSSEEEETTEEEEHHHHHHH
T ss_pred CcccccCCcc---CCCccCccCCeEECHHHHhHH
Confidence 4555555555 322232245555666555543
No 177
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=56.43 E-value=14 Score=22.28 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=32.0
Q ss_pred Cceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccCCC
Q 048313 86 CKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHKHA 134 (252)
Q Consensus 86 C~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 134 (252)
|+..+. ...+..|++. -.-.|+.|+. |+... ....|..|++..|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHHcCCc
Confidence 665554 3456677764 2345788975 88776 4688999988888754
No 178
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=56.20 E-value=6 Score=23.05 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.6
Q ss_pred EeeccccCCCCceeeccchHHhHhhhCccc
Q 048313 76 QVTCENEDHGCKEKMSYSKKYDHGKACHHA 105 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~ 105 (252)
.+.|||. -.-.+....+..|...|.-+
T Consensus 5 ~v~CPyd---~~H~i~~~~l~~Hl~kC~~r 31 (37)
T 2vy4_A 5 VVICPYD---SNHHMPKSSLAKHMASCRLR 31 (37)
T ss_dssp CEECTTT---SSCEECGGGHHHHHHHHHHH
T ss_pred EEECCCC---CCeEeCHHHHHHHHHHHhhh
Confidence 5789874 77889999999999888643
No 179
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.14 E-value=5.2 Score=27.59 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=4.5
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|..|.+++
T Consensus 27 ~C~~C~~~I 35 (90)
T 2dar_A 27 MCAHCNQVI 35 (90)
T ss_dssp BBSSSCCBC
T ss_pred CCccCCCEe
Confidence 355555554
No 180
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.11 E-value=4.5 Score=28.06 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=37.9
Q ss_pred eEeeccccCCCCceeec--cchHHhHhhhCc--ccCcCCCCCCCCccc-ChhhHhhHhhcccCCCC
Q 048313 75 IQVTCENEDHGCKEKMS--YSKKYDHGKACH--HARCSCPLAACNFVG-SFNQIYQHFRGVHKHAA 135 (252)
Q Consensus 75 l~v~C~~~~~GC~~~~~--~~~~~~H~~~C~--~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~~ 135 (252)
-.+.|+. |...+. ...+..|++.-. -.++.|+. |+... ....|..|++..|....
T Consensus 23 ~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~kp 82 (98)
T 2gqj_A 23 GEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSAKP 82 (98)
T ss_dssp SCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS--SCCCCSCHHHHHHHHHHHSCSCS
T ss_pred CCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC--CCCccCCHHHHHHHHHHHcCCCC
Confidence 3466763 777664 446677776433 46789986 88776 46889999988886543
No 181
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.65 E-value=4.7 Score=26.76 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.6
Q ss_pred eeecCCcccc
Q 048313 16 LHCFISFSSF 25 (252)
Q Consensus 16 l~C~iC~~~l 25 (252)
|.|..|..+|
T Consensus 37 F~C~~C~~~L 46 (76)
T 2cu8_A 37 LKCERCSKTL 46 (76)
T ss_dssp CBCSSSCCBC
T ss_pred CCCCCCCCcc
Confidence 3444444444
No 182
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=55.53 E-value=3.4 Score=26.62 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=4.6
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|+.|.+++
T Consensus 7 ~C~~C~~~I 15 (66)
T 1nyp_A 7 ICGACRRPI 15 (66)
T ss_dssp EETTTTEEC
T ss_pred CCcccCCEe
Confidence 355555555
No 183
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=54.46 E-value=4.3 Score=27.95 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=17.8
Q ss_pred CceEEccCCceecccChhhh-------cCCCCCCCcC
Q 048313 30 LSVAECGNGHIVCNRCCIEL-------MNKCPSCRLP 59 (252)
Q Consensus 30 ~Pi~qc~~GH~~C~~C~~~~-------~~~CP~Cr~~ 59 (252)
|+.|+-..-.++|..|-.+- ..+||.|..-
T Consensus 28 P~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 28 PSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp -----CCEEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred CHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 44465334568999998762 2489999864
No 184
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.88 E-value=6.5 Score=26.45 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=5.5
Q ss_pred CCceecccChhh
Q 048313 37 NGHIVCNRCCIE 48 (252)
Q Consensus 37 ~GH~~C~~C~~~ 48 (252)
.|.++|..|..+
T Consensus 59 ~g~~yC~~cy~~ 70 (79)
T 2cor_A 59 KGELYCLPCHDK 70 (79)
T ss_dssp TTEEECHHHHHT
T ss_pred CCEEeCHHHHHH
Confidence 444444444443
No 185
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=53.68 E-value=7.8 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred CCceEEcc-CCceecccChhhhcCCCCCCCcCC
Q 048313 29 LLSVAECG-NGHIVCNRCCIELMNKCPSCRLPI 60 (252)
Q Consensus 29 ~~Pi~qc~-~GH~~C~~C~~~~~~~CP~Cr~~~ 60 (252)
.++.++|. ||++.= ......||+|..+-
T Consensus 135 ~~~~~~C~~CG~i~~----~~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 135 IKKVYICPICGYTAV----DEAPEYCPVCGAPK 163 (170)
T ss_dssp CSCEEECTTTCCEEE----SCCCSBCTTTCCBG
T ss_pred CCCeeEeCCCCCeeC----CCCCCCCCCCCCCH
Confidence 34567887 888753 23446899998753
No 186
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.62 E-value=6.9 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.813 Sum_probs=6.1
Q ss_pred cCCceecccChhh
Q 048313 36 GNGHIVCNRCCIE 48 (252)
Q Consensus 36 ~~GH~~C~~C~~~ 48 (252)
..|.++|..|..+
T Consensus 61 ~~~~~~C~~c~~~ 73 (82)
T 2ehe_A 61 QDSELLCNDCYCS 73 (82)
T ss_dssp ETTEEEETTTSSC
T ss_pred eCCEEECHHHHhh
Confidence 3444555555443
No 187
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.16 E-value=7.3 Score=32.09 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=22.4
Q ss_pred eecCCcccccCCCC--ceEEcc-CCceecccChhh
Q 048313 17 HCFISFSSFIFTLL--SVAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 17 ~C~iC~~~l~~~~~--Pi~qc~-~GH~~C~~C~~~ 48 (252)
.|.+|...+ .. --..|. ||++||+.|...
T Consensus 166 ~C~~C~~~F---~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECHRCRVQF---GVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCTTTCCBC---BTTBCCEECTTTCCEECTTTCCE
T ss_pred CCcCcCCCC---CccccccccCCCcCEeChhhcCC
Confidence 799999877 32 125787 899999999764
No 188
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.26 E-value=4.2 Score=26.48 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=12.9
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIE 48 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~ 48 (252)
|.|..|..+| ..-.+.-..|.++|..|..+
T Consensus 32 F~C~~C~~~L---~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 32 FRCDLCQEVL---ADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp SBCSSSCCBC---SSSCCEEETTEEECHHHHHH
T ss_pred CEeCCCCCcC---CCCccEeECCeEECHHHhhh
Confidence 4455555554 22222213455555555443
No 189
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=50.95 E-value=5.4 Score=31.76 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhhh-cCCCCCCCcC
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-MNKCPSCRLP 59 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~~ 59 (252)
.+=|.|..|..+| ..-.+.-..|.++|..|..++ ..+|..|...
T Consensus 32 ~~CF~C~~C~~~L---~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 32 KSCFLCMVCKKNL---DSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTTCBCTTTCCBC---CSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCCcCcccCCcC---CCCeeEecCCEeeChhhhHhhcCccccccccc
Confidence 3557899999999 554454468999999999875 4677777643
No 190
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=50.81 E-value=4.2 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=12.7
Q ss_pred eeecCCcccccCCCCceEEccCCceec-ccChh
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVC-NRCCI 47 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C-~~C~~ 47 (252)
|.|..|..+| ..-.+.-..|.++| ..|..
T Consensus 33 F~C~~C~~~L---~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 33 FLCSCCSKCL---IGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp SBCTTTCCBC---TTSCCEEETTEEESSHHHHH
T ss_pred EECCCCCCcC---CCCceEEECCEEecCHHHhh
Confidence 4455555555 22212223455555 44543
No 191
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=50.75 E-value=5.7 Score=27.33 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=38.3
Q ss_pred EeeccccCCCCceeeccchHHhHhhhCccc-CcCCCCCCCCcccChhhHhhHhh
Q 048313 76 QVTCENEDHGCKEKMSYSKKYDHGKACHHA-RCSCPLAACNFVGSFNQIYQHFR 128 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~-p~~CP~~gC~~~g~~~~L~~Hl~ 128 (252)
-+.|. +|+..+.-.+++.|...|.-. .+.|- .|+......+...|.+
T Consensus 10 ~F~C~----~Cgd~lKK~kv~~H~~~Cr~~~~~SCI--DC~~~F~~~~y~~Hts 57 (79)
T 1wjv_A 10 FFTCN----ACGESVKKIQVEKHVSNCRNCECLSCI--DCGKDFWGDDYKSHVK 57 (79)
T ss_dssp EEEES----SSCCEEETTHHHHHHHHCTTCCEEEET--TTTEEEEGGGTTTCCC
T ss_pred EEEcC----CCCCeeecccchhHHhhCCCCCcEEec--ccCCeeCCCCEeCEee
Confidence 35675 699999999999999999864 67886 4988888888888853
No 192
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=49.58 E-value=20 Score=21.24 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=29.7
Q ss_pred Cceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 86 CKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 86 C~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
|+..+. ...+..|+.. -.-.|+.|+. |+... ....|..|++..|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSS--SSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCC--CCchhcCHHHHHHHHHHhcc
Confidence 555543 3456677763 3346788975 88776 46789999887654
No 193
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=48.78 E-value=3.5 Score=27.44 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=6.5
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|+.|.+++
T Consensus 17 ~C~~C~~~I 25 (77)
T 2egq_A 17 KCAGCKNPI 25 (77)
T ss_dssp CCSSSCCCC
T ss_pred cCcccCCcc
Confidence 577777777
No 194
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.71 E-value=5.6 Score=26.34 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=17.5
Q ss_pred eeeecCCcccccCCC--CceEEccCCceecccChhhh
Q 048313 15 VLHCFISFSSFIFTL--LSVAECGNGHIVCNRCCIEL 49 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~--~Pi~qc~~GH~~C~~C~~~~ 49 (252)
-|.|..|..+| . ...+. ..|.++|..|..++
T Consensus 31 CF~C~~C~~~L---~~~~~f~~-~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 31 CALCVRCGQMF---AEGEEMYL-QGSSIWHPACRQAA 63 (73)
T ss_dssp TSCCSSSCCCC---CSSCCCEE-ETTEEECTTHHHHT
T ss_pred cCEeCCCCCCC---CCCCeeEe-eCCEEEChHHChHh
Confidence 35666666666 3 22222 45666777766554
No 195
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=48.38 E-value=5.5 Score=39.89 Aligned_cols=59 Identities=7% Similarity=-0.012 Sum_probs=48.5
Q ss_pred CCeeeecCCcccccCCCCceEEccCC-ceecccChhhh---cCCCCCCCcCCc---ccchhHHHhheeee
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNG-HIVCNRCCIEL---MNKCPSCRLPIG---HSRSIAMEKVLESI 75 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~G-H~~C~~C~~~~---~~~CP~Cr~~~~---~~r~~~le~~~~~l 75 (252)
++.|.|||=.++| ++||.. +.| +++=++.+.+| ...||.=|.++. ..+|.++++.|+++
T Consensus 889 P~~F~cPIs~~lM---~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 889 PDEFLDPLMYTIM---KDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CGGGBCTTTCSBC---SSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHHhCCcchhhHH---hCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHH
Confidence 6789999999999 999985 666 68999999886 367998888875 45888888887764
No 196
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=46.97 E-value=9.3 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=16.0
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
|+.|+.+.|+... ....|..|++.
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHH
Confidence 4567655687765 45678888764
No 197
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=46.94 E-value=26 Score=24.92 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=40.0
Q ss_pred eeEeeccccCCCCceeecc-chHHhHhhhCcccCcCCCCCCCCccc-ChhhHhhHhhcccCCC
Q 048313 74 SIQVTCENEDHGCKEKMSY-SKKYDHGKACHHARCSCPLAACNFVG-SFNQIYQHFRGVHKHA 134 (252)
Q Consensus 74 ~l~v~C~~~~~GC~~~~~~-~~~~~H~~~C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 134 (252)
.-.+.|+. |+..+.. ..+..|+..= -.|+.|+. |+... ....|..|++..|.+.
T Consensus 72 ~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~~ 127 (129)
T 2wbt_A 72 ISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV--CKKEFTSTDSALDHVCKKHNIC 127 (129)
T ss_dssp HCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT--TCCBCSSHHHHHHHHHHTTCCC
T ss_pred CCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC--CCcccCCHHHHHHHHHHHCCcc
Confidence 34577874 8887754 4577888753 57889985 88776 4678999999888764
No 198
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.05 E-value=9.8 Score=25.29 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=4.4
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|..|.+++
T Consensus 17 ~C~~C~~~I 25 (80)
T 1x3h_A 17 KCGGCNRPV 25 (80)
T ss_dssp BCTTTCCBC
T ss_pred ccccCCCee
Confidence 355555544
No 199
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.42 E-value=12 Score=25.21 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=4.4
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|+.|.+++
T Consensus 17 ~C~~C~~~I 25 (80)
T 2dj7_A 17 HCAGCKEEI 25 (80)
T ss_dssp CCTTTCCCC
T ss_pred CCcCcCCee
Confidence 355555544
No 200
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.25 E-value=11 Score=25.06 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=4.7
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|+.|.+++
T Consensus 17 ~C~~C~~~I 25 (80)
T 2cuq_A 17 RCARCSKTL 25 (80)
T ss_dssp CCTTTCCCC
T ss_pred cCCCCCCEe
Confidence 355555555
No 201
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=44.60 E-value=8.9 Score=33.31 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred eeeecCCcccccCCCCceEEc---cCC--ceecccChhhhc---CCCCCCCcC
Q 048313 15 VLHCFISFSSFIFTLLSVAEC---GNG--HIVCNRCCIELM---NKCPSCRLP 59 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc---~~G--H~~C~~C~~~~~---~~CP~Cr~~ 59 (252)
.-.||+|...- .--+..= ..| +..|+-|-..|. .+||.|...
T Consensus 182 ~~~CPvCGs~P---~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPP---MAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCE---EEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcC---ceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 35799999876 4434431 245 589999988863 689999875
No 202
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.76 E-value=10 Score=25.30 Aligned_cols=9 Identities=11% Similarity=0.301 Sum_probs=4.3
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|+.|.+++
T Consensus 17 ~C~~C~~~I 25 (81)
T 2dlo_A 17 KCATCSQPI 25 (81)
T ss_dssp BCTTTCCBC
T ss_pred ccccCCCee
Confidence 344454444
No 203
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.62 E-value=12 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=19.5
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
+|+.|+.++|+.... ...|..|++..
T Consensus 5 k~~~C~~~~C~k~f~~~~~L~~H~~~H 31 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31 (38)
T ss_dssp CCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCcccCCHHHHHHHHHHh
Confidence 567898767988764 57789998753
No 204
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.51 E-value=23 Score=22.69 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=29.4
Q ss_pred Cceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 86 CKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 86 C~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
|+..+. ...+..|++. -.-.|+.|+. |+... ....|..|++..+.
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECSS--SCCEESSHHHHHHHGGGSCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCCC--CCCccCCHHHHHHHHHHhCC
Confidence 666554 3456677663 2346788975 88766 46789999876544
No 205
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.45 E-value=6.7 Score=26.13 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=31.5
Q ss_pred eeeecCCcccccCCCCce---EEccCCceecccChhhhcCCCCCCCcC
Q 048313 15 VLHCFISFSSFIFTLLSV---AECGNGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi---~qc~~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
.-.|..|.+-+ .-+- ++|.||..||+.=+..-...|+..-+.
T Consensus 15 ~~rC~~C~kk~---gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~ 59 (67)
T 1x4w_A 15 RRRCFQCQTKL---ELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMG 59 (67)
T ss_dssp TTBCSSSCCBC---CHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSC
T ss_pred CCcchhhCCee---cccccCceEecCCCEehhccCCccccCCcccccc
Confidence 34788999888 6552 789999999998876555678766443
No 206
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.97 E-value=5.6 Score=26.30 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=6.7
Q ss_pred eeecCCcccc
Q 048313 16 LHCFISFSSF 25 (252)
Q Consensus 16 l~C~iC~~~l 25 (252)
-.|+.|.+++
T Consensus 12 ~~C~~C~~~I 21 (77)
T 1g47_A 12 ATCERCKGGF 21 (77)
T ss_dssp CBCSSSCCBC
T ss_pred CCchhcCCcc
Confidence 4577777766
No 207
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.46 E-value=12 Score=33.14 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=39.8
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh-------cCCCCCCCcCCcc---cchhHHHhheee
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-------MNKCPSCRLPIGH---SRSIAMEKVLES 74 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-------~~~CP~Cr~~~~~---~r~~~le~~~~~ 74 (252)
|.||+=...+ +.|+.--.|.|+-|-.=..=+ ..+||+|.+.+.. .-+..+.+++.+
T Consensus 216 L~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 216 LMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp SBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 7899999999 999988779998765543221 2689999998742 234445555543
No 208
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=42.42 E-value=12 Score=20.31 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.3
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
+|+.|+.++|+... ....|..|++.
T Consensus 7 k~~~C~~~~C~k~f~~~~~L~~H~~~ 32 (37)
T 1va1_A 7 KQHICHIQGCGKVYGKTSHLRAHLRW 32 (37)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 46788766788776 45778888764
No 209
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.40 E-value=17 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=25.2
Q ss_pred CeeeecCCcccccCCCCceEEcc-CCceecccChhhh
Q 048313 14 TVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIEL 49 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~ 49 (252)
+.-.|.+|..++-....+-.+|. |.|.+|..|....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 34579999998811123446786 8999999997754
No 210
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.99 E-value=8.4 Score=25.79 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=5.0
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|+.|.+++
T Consensus 17 ~C~~C~~~I 25 (82)
T 1x63_A 17 KCKGCFKAI 25 (82)
T ss_dssp BCSSSCCBC
T ss_pred cCccCCccc
Confidence 455555555
No 211
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=41.92 E-value=7.5 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=19.0
Q ss_pred ccCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 104 HARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 104 ~~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
-+|+.|+++.|+.... ...|..|++.
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence 3678897667987764 4778888765
No 212
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=41.70 E-value=20 Score=22.58 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=33.4
Q ss_pred EeeccccCCCCceeecc-chHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 76 QVTCENEDHGCKEKMSY-SKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
.+.|+.. +|+..+.. ..+..|++. -.-.|+.|+. |+.... ...|..|++.
T Consensus 19 ~~~C~~~--~C~k~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~ 71 (73)
T 1f2i_G 19 PYACPVE--SCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT 71 (73)
T ss_dssp CEECSST--TBCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHTT
T ss_pred ccCCcCC--CCCCccCCHHHHHHHHHhhCCCCCeECCC--CCchhCCHHHHHHHHHh
Confidence 4667632 68877654 456788763 3456788985 887764 6788889764
No 213
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.32 E-value=9.4 Score=26.90 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=33.3
Q ss_pred eCCeeeecCCcccccC--CCCceEEcc-CCceecccChhh----hcCCCCCCCcCCc
Q 048313 12 CTTVLHCFISFSSFIF--TLLSVAECG-NGHIVCNRCCIE----LMNKCPSCRLPIG 61 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~--~~~Pi~qc~-~GH~~C~~C~~~----~~~~CP~Cr~~~~ 61 (252)
+...-.|.||.+-+-- .-.+..-|. |+-.+|..|.+- -...||.|+.+..
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3445679999886300 122444565 788899999864 2478999998764
No 214
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.23 E-value=11 Score=24.90 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=23.0
Q ss_pred CeeeecCCcccccCCCCceEEcc-C-CceecccChhhh
Q 048313 14 TVLHCFISFSSFIFTLLSVAECG-N-GHIVCNRCCIEL 49 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~Pi~qc~-~-GH~~C~~C~~~~ 49 (252)
+.--|-||.+-. ++.|. | |-+||..|+...
T Consensus 7 e~pWC~ICneDA------tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA------TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC------CEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC------eEEecCCCCceehHHHHHHH
Confidence 334588888766 57786 6 889999999875
No 215
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.16 E-value=17 Score=28.17 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=28.8
Q ss_pred eeeecCCcccccCCCCceEEcc-CCceecccChhhhc----CCCCCCCc
Q 048313 15 VLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELM----NKCPSCRL 58 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~----~~CP~Cr~ 58 (252)
.=.|.+|..+|-....+-.+|. |.|.+|..|...+. ..|-+|++
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 4579999997511133446786 89999999985331 34666654
No 216
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=41.12 E-value=19 Score=17.64 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=17.2
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
|+.|+. |+... ....|..|.+..|.
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY--CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS--SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC--CCCccCCHHHHHHHHHHHcc
Confidence 567864 77665 35788999876554
No 217
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.43 E-value=16 Score=24.42 Aligned_cols=17 Identities=6% Similarity=0.000 Sum_probs=13.2
Q ss_pred EEEeCCeeeecCCcccc
Q 048313 9 FVLCTTVLHCFISFSSF 25 (252)
Q Consensus 9 ~~~~~~~l~C~iC~~~l 25 (252)
|.+.++.+.|.+|..+.
T Consensus 1 m~~~m~~y~C~vCGyiY 17 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIY 17 (70)
T ss_dssp CBCCSSCEEETTTCCEE
T ss_pred CCCCCceEEeCCCCEEE
Confidence 44567789999998876
No 218
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=40.36 E-value=13 Score=33.11 Aligned_cols=56 Identities=23% Similarity=0.458 Sum_probs=39.2
Q ss_pred eeecCCcccccCCCCceEEccCCceecccChhhh-------cCCCCCCCcCCcc---cchhHHHhheee
Q 048313 16 LHCFISFSSFIFTLLSVAECGNGHIVCNRCCIEL-------MNKCPSCRLPIGH---SRSIAMEKVLES 74 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~~-------~~~CP~Cr~~~~~---~r~~~le~~~~~ 74 (252)
|.||+=...+ ..|+.--.|-|+-|-.=..=+ ..+||+|.+.+.. .-+..+.+++.+
T Consensus 250 L~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 250 LQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp SBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred ecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 8899999999 999988779998765543211 2689999988642 234444555443
No 219
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=39.16 E-value=27 Score=17.17 Aligned_cols=25 Identities=24% Similarity=0.467 Sum_probs=16.8
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
|+.|+. |+... ....|..|+...|.
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACGL--CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCTT--TCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCcc--cCcccCChHHHHHHHHHHcc
Confidence 567864 87665 35788899555554
No 220
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.12 E-value=27 Score=16.94 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=16.0
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
|+.|+. |+... ....|..|++..
T Consensus 2 ~~~C~~--C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 2 SFVCEV--CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCTT--TCCBCSSHHHHHHHHHHH
T ss_pred CeECCC--CCcccCCHHHHHHHHHHh
Confidence 567864 77665 357888898753
No 221
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=38.11 E-value=20 Score=17.39 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=15.6
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
|+.|+. |+... ....|..|.+..
T Consensus 2 ~~~C~~--C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 2 EHKCPH--CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCSS--CCCCCCTTTHHHHHHHHH
T ss_pred CCcCCC--CCcccCCHHHHHHHHHHh
Confidence 567875 77665 356788887653
No 222
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.10 E-value=16 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=13.2
Q ss_pred eeecCCcccccCCCCceEEc--cCCceecccChhh
Q 048313 16 LHCFISFSSFIFTLLSVAEC--GNGHIVCNRCCIE 48 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc--~~GH~~C~~C~~~ 48 (252)
|.|..|...| ..-.+.. ..|.++|..|..+
T Consensus 43 F~C~~C~~~L---~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 43 FRCHTCEATL---WPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp CBCSSSCCBC---CTTSEECCTTTCCCEETTTCCC
T ss_pred CEEcCCCCCc---CCCceeEeCcCCEEEChHHHHh
Confidence 4455555555 3322321 2455555555443
No 223
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=37.71 E-value=17 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.526 Sum_probs=17.3
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecc--cCh
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCN--RCC 46 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~--~C~ 46 (252)
++.|.||+|...| . +. . |..+|. .|.
T Consensus 8 L~iL~CP~c~~~L---~---~~-~-~~L~C~~~~c~ 35 (56)
T 2kpi_A 8 LEILACPACHAPL---E---ER-D-AELICTGQDCG 35 (56)
T ss_dssp TTSCCCSSSCSCE---E---EE-T-TEEEECSSSCC
T ss_pred HhheeCCCCCCcc---e---ec-C-CEEEcCCcCCC
Confidence 3567899999988 2 22 1 666666 563
No 224
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=37.14 E-value=6.6 Score=25.39 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=7.9
Q ss_pred eeecCCcccc
Q 048313 16 LHCFISFSSF 25 (252)
Q Consensus 16 l~C~iC~~~l 25 (252)
-.|..|.+++
T Consensus 12 ~~C~~C~~~i 21 (72)
T 3f6q_B 12 ATCERCKGGF 21 (72)
T ss_dssp CBCTTTCCBC
T ss_pred ccchhcCccc
Confidence 4688888887
No 225
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.69 E-value=41 Score=21.62 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=34.7
Q ss_pred EeeccccCCCCceeecc-chHHhHhhh-Ccc----cCcCCCCCCCCccc-ChhhHhhHhhcccCCCC
Q 048313 76 QVTCENEDHGCKEKMSY-SKKYDHGKA-CHH----ARCSCPLAACNFVG-SFNQIYQHFRGVHKHAA 135 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~----~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~~ 135 (252)
.+.|+. |...+.. ..+..|+.. -.- .++.|+. |+... ....|..|++..|....
T Consensus 15 ~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~ 75 (86)
T 1x6h_A 15 PYACSH----CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARHADNCAGPDG 75 (86)
T ss_dssp CEECSS----SSCEESSHHHHHHHHHHTTCSSCCCCCEECSS--SCCEESCHHHHHHHHHHCCCCCS
T ss_pred CCcCCC----CCCccCCHHHHHHHHHHhcCCcCCCcceECCC--CCChhCCHHHHHHHHHHccCCCC
Confidence 356664 7776654 356677653 222 4678875 88776 46788899887776544
No 226
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=36.66 E-value=37 Score=21.33 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=33.9
Q ss_pred eeccccCCCCceeec-cchHHhHhhh-CcccCcCCCCCCCCcccC-hhhHhhHhhcccC
Q 048313 77 VTCENEDHGCKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVGS-FNQIYQHFRGVHK 132 (252)
Q Consensus 77 v~C~~~~~GC~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 132 (252)
+.|.. |+..+. ...+..|+.. =.-+|+.|+. |+.... ...|..|++. |.
T Consensus 5 y~C~~----C~k~F~~~~~L~~H~~~Ht~ekp~~C~~--C~k~F~~~~~L~~H~~~-Ht 56 (60)
T 4gzn_C 5 FFCNF----CGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKV-HQ 56 (60)
T ss_dssp EECTT----TCCEESSHHHHHHHHHHHHTCCCEECTT--TCCEESSHHHHHHHGGG-GS
T ss_pred ccCCC----CCCEeCCHHHHHHHHHHhCCCcCeECCC--CCCCcCCHHHHHHHhCc-cC
Confidence 45653 777765 4457788763 2457889975 888764 6889999875 54
No 227
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.65 E-value=11 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.769 Sum_probs=16.3
Q ss_pred Ecc-CCceecccChhhh--cCCCCCCCcCC
Q 048313 34 ECG-NGHIVCNRCCIEL--MNKCPSCRLPI 60 (252)
Q Consensus 34 qc~-~GH~~C~~C~~~~--~~~CP~Cr~~~ 60 (252)
.|. ||+.| ...+ ...||.|+..-
T Consensus 69 ~C~~CG~~F----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVF----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBC----CCCSSCCSSCSSSCCCC
T ss_pred ChhhCcCee----cccCCCCCCCcCCCCCc
Confidence 576 99999 2222 37899998753
No 228
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=36.42 E-value=34 Score=20.83 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=9.6
Q ss_pred CCeeeecCCcccc
Q 048313 13 TTVLHCFISFSSF 25 (252)
Q Consensus 13 ~~~l~C~iC~~~l 25 (252)
++.+.|++|..+.
T Consensus 2 m~~y~C~vCGyvy 14 (46)
T 6rxn_A 2 MQKYVCNVCGYEY 14 (46)
T ss_dssp CCCEEETTTCCEE
T ss_pred CCEEECCCCCeEE
Confidence 3567888888776
No 229
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.21 E-value=20 Score=17.45 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=15.5
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
+|+.|+. |+.... ...|..|.+.
T Consensus 2 k~~~C~~--C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCSV--CGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECSS--SCCEESCHHHHHHHHTT
T ss_pred cCccCCC--CCcccCCHHHHHHHHHh
Confidence 3567764 776653 5778888764
No 230
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=35.79 E-value=36 Score=17.84 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.7
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
.|+.|+. |+.... ...|..|++..
T Consensus 10 k~~~C~~--C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 10 KPFQCPD--CDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSBCCTT--TCCCBSSHHHHHHHHGGG
T ss_pred CCccCCC--CCcccCcHHHHHHHHHHh
Confidence 6788975 887654 67888997653
No 231
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=35.76 E-value=7.7 Score=34.70 Aligned_cols=34 Identities=32% Similarity=0.647 Sum_probs=0.0
Q ss_pred eCCeeeecCCcccccCCCCc--eEEcc-CCceecccChhh
Q 048313 12 CTTVLHCFISFSSFIFTLLS--VAECG-NGHIVCNRCCIE 48 (252)
Q Consensus 12 ~~~~l~C~iC~~~l~~~~~P--i~qc~-~GH~~C~~C~~~ 48 (252)
|.+.-.|..|...+ ..- -..|. ||++||..|...
T Consensus 372 ~~~~~~c~~c~~~f---~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 372 VTHVMMCMNCGCDF---SLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ----------------------------------------
T ss_pred cccCCcCCCcCCCC---CCcchhhhcccCcCEeehhhCCC
Confidence 34456799999887 321 24676 899999999763
No 232
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.69 E-value=18 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=18.5
Q ss_pred CeeeecCCcc-cccCCCCceEEccCCceecccChhh
Q 048313 14 TVLHCFISFS-SFIFTLLSVAECGNGHIVCNRCCIE 48 (252)
Q Consensus 14 ~~l~C~iC~~-~l~~~~~Pi~qc~~GH~~C~~C~~~ 48 (252)
..+.||.|.. .+ ++.-..|-++|..|-.-
T Consensus 10 ~~~~Cp~C~~~~l------v~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 10 PRVTCPNHPDAIL------VEDYRAGDMICPECGLV 39 (58)
T ss_dssp SCCSBTTBSSSCC------EECSSSCCEECTTTCCE
T ss_pred ccccCcCCCCCce------eEeCCCCeEEeCCCCCE
Confidence 3457999975 33 33335688888888543
No 233
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.65 E-value=32 Score=21.78 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=28.4
Q ss_pred Cceeec-cchHHhHhhh-CcccCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 86 CKEKMS-YSKKYDHGKA-CHHARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 86 C~~~~~-~~~~~~H~~~-C~~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
|+..+. ...+..|++. -.-+++.|+. |+... ....|..|++..+.
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECTT--TCCEESCHHHHHHHHHHHCC
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECCC--CCchhCCHHHHHHHHHhcCC
Confidence 665554 3345666653 2346788975 88776 46788999876443
No 234
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.63 E-value=11 Score=25.82 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.9
Q ss_pred CCceecccChhh
Q 048313 37 NGHIVCNRCCIE 48 (252)
Q Consensus 37 ~GH~~C~~C~~~ 48 (252)
.|.++|..|..+
T Consensus 61 ~g~~yC~~~y~~ 72 (91)
T 2d8y_A 61 HGRIYCKPHFNQ 72 (91)
T ss_dssp SSCCCCHHHHHH
T ss_pred CCEEECHHHHHH
Confidence 445555555444
No 235
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=35.42 E-value=11 Score=30.96 Aligned_cols=26 Identities=4% Similarity=-0.020 Sum_probs=8.4
Q ss_pred EeeccccCCCCceee-----ccchHHhHhhh
Q 048313 76 QVTCENEDHGCKEKM-----SYSKKYDHGKA 101 (252)
Q Consensus 76 ~v~C~~~~~GC~~~~-----~~~~~~~H~~~ 101 (252)
.+.|++...||...+ +..++++|++.
T Consensus 9 ~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 9 SMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ---------------CTTTTTTTTTHHHHHH
T ss_pred heeccccccCceeeccccccchhHHHHHHHH
Confidence 468999999999999 88888888764
No 236
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=35.07 E-value=22 Score=17.32 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=15.6
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
|+.|+. |+... ....|..|++..
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~H 25 (29)
T 1rik_A 2 KFACPE--CPKRFMRSDHLTLHILLH 25 (29)
T ss_dssp CEECSS--SSCEESCSHHHHHHHTGG
T ss_pred CccCCC--CCchhCCHHHHHHHHHHh
Confidence 567764 77665 357788888753
No 237
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.66 E-value=33 Score=16.29 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=14.3
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
|+.|+. |+... ....|..|.+.
T Consensus 1 ~~~C~~--C~k~f~~~~~l~~H~~~ 23 (27)
T 1znf_A 1 XYKCGL--CERSFVEKSALSRHQRV 23 (27)
T ss_dssp -CBCSS--SCCBCSSHHHHHHHGGG
T ss_pred CccCCC--CCCcCCCHHHHHHHHHH
Confidence 356764 77665 35788888765
No 238
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.97 E-value=21 Score=20.38 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=19.6
Q ss_pred cCCCCCCCCcc-cChhhHhhHhhcccCCC
Q 048313 107 CSCPLAACNFV-GSFNQIYQHFRGVHKHA 134 (252)
Q Consensus 107 ~~CP~~gC~~~-g~~~~L~~Hl~~~H~~~ 134 (252)
..||. |... .+...|..|....|...
T Consensus 6 FiCP~--C~~~l~s~~~L~~Hye~~H~~~ 32 (34)
T 3mjh_B 6 FICPQ--CMKSLGSADELFKHYEAVHDAG 32 (34)
T ss_dssp EECTT--TCCEESSHHHHHHHHHHHTSSS
T ss_pred cCCcH--HHHHcCCHHHHHHHHHhccccC
Confidence 46876 7544 46799999999999753
No 239
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.92 E-value=11 Score=25.79 Aligned_cols=10 Identities=20% Similarity=-0.024 Sum_probs=6.4
Q ss_pred eeecCCcccc
Q 048313 16 LHCFISFSSF 25 (252)
Q Consensus 16 l~C~iC~~~l 25 (252)
-.|..|.+++
T Consensus 26 ~~C~~C~~~I 35 (89)
T 1x64_A 26 PLCDKCGSGI 35 (89)
T ss_dssp CBCTTTCCBC
T ss_pred CCcccCCCEe
Confidence 3566676666
No 240
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.34 E-value=35 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=27.5
Q ss_pred CeeeecC--CcccccCCCCceEEcc-CCceecccChhhhcCCCCC
Q 048313 14 TVLHCFI--SFSSFIFTLLSVAECG-NGHIVCNRCCIELMNKCPS 55 (252)
Q Consensus 14 ~~l~C~i--C~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~~~CP~ 55 (252)
....|+. |.... ..| +.|. ||..||..=+..-...|+.
T Consensus 24 ~~~~C~~~~Ck~~~---~l~-f~C~~C~~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE---LVA-VICPYCEKNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEE---SSC-EECTTTCCEECGGGCSTGGGTCSS
T ss_pred CCCCCCCcCCCCCC---ccc-eECCCCCcccccccCCccCCCCCC
Confidence 3467988 99876 666 6799 9999998655444457764
No 241
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=32.72 E-value=7.2 Score=24.62 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=21.5
Q ss_pred CceeeccchHHhHhhhCcccCcCCCCCCCCc
Q 048313 86 CKEKMSYSKKYDHGKACHHARCSCPLAACNF 116 (252)
Q Consensus 86 C~~~~~~~~~~~H~~~C~~~p~~CP~~gC~~ 116 (252)
|........++.|...|+|+.+.|. .|..
T Consensus 13 CrNHG~~~~lKGHKr~C~~r~C~C~--kC~l 41 (52)
T 1lpv_A 13 CRNHGLKITLKGHKRYCKFRYCTCE--KCRL 41 (52)
T ss_dssp HHTTTCCCTTTTCGGGCTTTTCCSH--HHHH
T ss_pred cccCCCccccCCccCccCCCCCcCC--CCcC
Confidence 3334456778899999999999986 4654
No 242
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=31.15 E-value=34 Score=17.66 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=17.8
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++..+
T Consensus 6 k~~~C~~--C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 6 RPFVCRI--CLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp SCEECSS--SCCEESSHHHHHHHHGGGT
T ss_pred cCeeCCC--CCcccCCHHHHHHHHHHcC
Confidence 5678874 88776 4678889987643
No 243
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=30.95 E-value=30 Score=27.91 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=15.2
Q ss_pred ceEEcc-CCceecccChhhhcCCCCCCCcC
Q 048313 31 SVAECG-NGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 31 Pi~qc~-~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
..++|. ||+++=+ .....||+|..+
T Consensus 170 ~~~~C~~CG~i~~g----~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG----EDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES----SCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcC----cCCCCCCCCCCC
Confidence 456665 6666422 222589999875
No 244
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.68 E-value=22 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=17.2
Q ss_pred eEEcc-CCceecccChhhhcCCCCCCCcC
Q 048313 32 VAECG-NGHIVCNRCCIELMNKCPSCRLP 59 (252)
Q Consensus 32 i~qc~-~GH~~C~~C~~~~~~~CP~Cr~~ 59 (252)
.+.|. ||+++=+. .....||+|..+
T Consensus 155 ~~~C~~CG~~~~g~---~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT---GAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE---ECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCC---CCCCCCCCCcCC
Confidence 67786 88875332 333589999876
No 245
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=30.45 E-value=23 Score=22.72 Aligned_cols=52 Identities=23% Similarity=0.428 Sum_probs=34.4
Q ss_pred eccccCCCCceeec-cchHHhHhhh----Cc----ccCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 78 TCENEDHGCKEKMS-YSKKYDHGKA----CH----HARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 78 ~C~~~~~GC~~~~~-~~~~~~H~~~----C~----~~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
.|... +|...+. ..++..|... -. -.++.|.=.+|++.+ ....|..|++.+|
T Consensus 3 ~C~W~--~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 3 KCKWK--ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCCT--TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred eEeeC--CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence 45554 6777654 4456677531 11 125778777899877 4688999999877
No 246
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.42 E-value=25 Score=17.00 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=15.2
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
+|+.|+. |+... ....|..|++.
T Consensus 2 k~~~C~~--C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCSL--CPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECSS--SSCEESSHHHHHHHHHH
T ss_pred cCccCCC--cChhhCCHHHHHHHHHH
Confidence 3567764 77765 35778888754
No 247
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.38 E-value=31 Score=17.77 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=17.7
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|.+..+
T Consensus 6 k~~~C~~--C~k~f~~~~~L~~H~~~h~ 31 (35)
T 2elx_A 6 SGYVCAL--CLKKFVSSIRLRSHIREVH 31 (35)
T ss_dssp CSEECSS--SCCEESSHHHHHHHHHHTS
T ss_pred CCeECCC--CcchhCCHHHHHHHHHHHc
Confidence 5678874 87765 4578889987644
No 248
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=30.35 E-value=49 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=24.8
Q ss_pred ccchHHhHhhhCcccCcCCCCCCCCc--ccChhhHhhHhhc
Q 048313 91 SYSKKYDHGKACHHARCSCPLAACNF--VGSFNQIYQHFRG 129 (252)
Q Consensus 91 ~~~~~~~H~~~C~~~p~~CP~~gC~~--~g~~~~L~~Hl~~ 129 (252)
+..+++.|..+|+.. .||+ |-- .-+...|..|++.
T Consensus 15 T~kEl~~H~~sCp~g--qCPY--C~~~~e~tesAlQaHfkv 51 (57)
T 2k9h_A 15 TAKELESHRQSCING--QCPY--CMTITEATESALQAHYSI 51 (57)
T ss_dssp STTTHHHHHHHHTTT--BCTT--TCCBCCSSHHHHHHHHTT
T ss_pred hHHHHHHHhccCCCC--CCCc--ccCcCCcCHHHHHHHHHH
Confidence 457889999999886 5665 422 2456789999864
No 249
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=29.93 E-value=43 Score=17.31 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=17.0
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+. |+... ....|..|+...
T Consensus 1 kp~~C~~--C~k~F~~~~~L~~H~~~H 25 (33)
T 1rim_A 1 YKFACPE--CPKRFMRSDHLSKHITLH 25 (33)
T ss_dssp CCCCCSS--SCCCCSSHHHHHHHHHHH
T ss_pred CcccCCC--CCchhCCHHHHHHHHHHh
Confidence 3677874 87765 467899998753
No 250
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.78 E-value=34 Score=16.56 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=16.3
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
+|+.|+. |+.... ...|..|++..
T Consensus 2 k~~~C~~--C~~~f~~~~~l~~H~~~h 26 (30)
T 2m0d_A 2 KPYQCDY--CGRSFSDPTSKMRHLETH 26 (30)
T ss_dssp CCEECTT--TCCEESCHHHHHHHHHTT
T ss_pred cCccCCC--CCcccCCHHHHHHHHHHh
Confidence 4567864 877654 57788887753
No 251
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.58 E-value=16 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=20.5
Q ss_pred eeeecCCcccccCCCC--ceEEccCCceecccChhhh-cCCCCCC
Q 048313 15 VLHCFISFSSFIFTLL--SVAECGNGHIVCNRCCIEL-MNKCPSC 56 (252)
Q Consensus 15 ~l~C~iC~~~l~~~~~--Pi~qc~~GH~~C~~C~~~~-~~~CP~C 56 (252)
-|.|..|..+| .. ..+.-..|.++|..|..++ ..+|-.|
T Consensus 30 CF~C~~C~~~L---~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c 71 (114)
T 1j2o_A 30 CLSCDLCGCRL---GEVGRRLYYKLGRKLCRRDYLRLGGSGGHMG 71 (114)
T ss_dssp TCCCSSSCSCC---CCSSSCCCCBTTBCCCHHHHHHHHTSCCSSC
T ss_pred cCcccccCCch---hcCCCeeEEECCeeechHHHHHHhCcccCcC
Confidence 35666666666 42 1222246666776666553 3444434
No 252
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=29.43 E-value=38 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=30.0
Q ss_pred CCeeeecCCcccccCCCCceEEcc-CCceecccChhhhcCCCC
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELMNKCP 54 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~~~CP 54 (252)
...-.|.+|...++.-...-++|. ||-.+|+.|...+ ..|+
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~ 568 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCG 568 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC-
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCC
Confidence 445679999998843223458898 9999999999987 4554
No 253
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.57 E-value=7.3 Score=26.08 Aligned_cols=11 Identities=9% Similarity=0.029 Sum_probs=7.8
Q ss_pred eeeecCCcccc
Q 048313 15 VLHCFISFSSF 25 (252)
Q Consensus 15 ~l~C~iC~~~l 25 (252)
.-.|..|.+++
T Consensus 15 ~~~C~~C~~~I 25 (79)
T 1x62_A 15 LPMCDKCGTGI 25 (79)
T ss_dssp CCCCSSSCCCC
T ss_pred CCccccCCCCc
Confidence 34677887777
No 254
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.39 E-value=26 Score=23.18 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=5.1
Q ss_pred eecCCcccc
Q 048313 17 HCFISFSSF 25 (252)
Q Consensus 17 ~C~iC~~~l 25 (252)
.|..|.+++
T Consensus 17 ~C~~C~~~I 25 (81)
T 1x6a_A 17 FCHGCSLLM 25 (81)
T ss_dssp BCTTTCCBC
T ss_pred cCccCCCCc
Confidence 455565555
No 255
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.78 E-value=51 Score=18.35 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=18.6
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcccC
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVHK 132 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 132 (252)
+|+.|+. |+.... ...|..|++..|.
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~~H~ 37 (47)
T 2epx_A 11 KPYECIE--CGKAFIQNTSLIRHWRYYHT 37 (47)
T ss_dssp CSBCCSS--SCCCBSSHHHHHHHHTTTTT
T ss_pred CCEECCc--cCchhCChHHHHHHhHhhcC
Confidence 5778875 877664 6888999884454
No 256
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.71 E-value=58 Score=17.56 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=18.2
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
.|+.|+. |+.... ...|..|++...
T Consensus 10 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2ytb_A 10 KPYRCDQ--CGKAFSQKGSLIVHIRVHT 35 (42)
T ss_dssp CSBCCTT--TTCCBSSHHHHHTTGGGTS
T ss_pred CCeeCCC--ccchhCCHHHHHHHHHHhC
Confidence 5778875 887664 678999987543
No 257
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.50 E-value=47 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=21.3
Q ss_pred CcCCCCCCCCcccC-hhhHhhHhhcccCCCC
Q 048313 106 RCSCPLAACNFVGS-FNQIYQHFRGVHKHAA 135 (252)
Q Consensus 106 p~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~~ 135 (252)
+..|| .|+.... ...|..|++..+..-+
T Consensus 12 ~~~CP--rCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 12 RKICP--RCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp CCCCT--TTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred ceeCC--cccccccchHHHHhhhhhcCcchh
Confidence 46787 4887775 6889999998887644
No 258
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=27.44 E-value=24 Score=19.15 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=5.5
Q ss_pred eeeecCCcccc
Q 048313 15 VLHCFISFSSF 25 (252)
Q Consensus 15 ~l~C~iC~~~l 25 (252)
.+.||+|...+
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 34555555444
No 259
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=27.30 E-value=31 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCcCCcccchhHHHhheeeeEeeccccCCCCceeeccchHHhHhhh
Q 048313 56 CRLPIGHSRSIAMEKVLESIQVTCENEDHGCKEKMSYSKKYDHGKA 101 (252)
Q Consensus 56 Cr~~~~~~r~~~le~~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~ 101 (252)
|...+.+..-..=|+.-.-....||.....|+|.+.+.++.+|...
T Consensus 16 C~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 16 CEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred CCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 4444433322333444444567888764459999999999999876
No 260
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.22 E-value=58 Score=17.65 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.1
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++...
T Consensus 10 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2eos_A 10 KPYPCEI--CGTRFRHLQTLKSHLRIHT 35 (42)
T ss_dssp CCBCCSS--SCCCBSSHHHHHHHTTTTS
T ss_pred CCEECCC--CCCccCCHHHHHHHHHhcC
Confidence 5788875 887764 578899987543
No 261
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.99 E-value=28 Score=16.78 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=15.0
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
|+.|+. |+... ....|..|.+.
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~ 24 (29)
T 2m0f_A 2 PLKCRE--CGKQFTTSGNLKRHLRI 24 (29)
T ss_dssp CEECTT--TSCEESCHHHHHHHHHH
T ss_pred CccCCC--CCCccCChhHHHHHHHH
Confidence 567764 77665 35778888765
No 262
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.90 E-value=36 Score=19.07 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=17.4
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++...
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enf_A 11 KPYKCNE--CGKVFTQNSHLVRHRGIHT 36 (46)
T ss_dssp CSCBCSS--SCCBCSSHHHHHHHHTTTT
T ss_pred cCeECCC--CCcccCCHHHHHHHHHhhC
Confidence 5678875 87765 4578888976543
No 263
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.47 E-value=56 Score=18.29 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=17.4
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
+|+.|+. |+.... ...|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2eon_A 11 KPYKCQV--CGKAFRVSSHLVQHHSVH 35 (46)
T ss_dssp CSCBCSS--SCCBCSSHHHHHHHTTTT
T ss_pred cccCCCC--CCcccCcHHHHHHHHHhc
Confidence 5778875 887764 57888998753
No 264
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.25 E-value=67 Score=17.80 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=17.7
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++..+
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytn_A 11 KPYKCNE--CGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp SSCBCTT--TCCBCSSHHHHHHHGGGTS
T ss_pred cCeECCC--CCCeeCCHHHHHHHhhhcC
Confidence 5678875 87766 4578889977643
No 265
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.24 E-value=48 Score=18.60 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=17.0
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
+|+.|+.+.|+... ....|..|++.
T Consensus 11 k~~~C~~~~C~k~f~~~~~L~~H~~~ 36 (48)
T 2ent_A 11 KPFACTWPGCGWRFSRSDELSRHRRS 36 (48)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHTT
T ss_pred CCeECCCCCCCCccCCHHHHHHHHHH
Confidence 46677655687765 35778888765
No 266
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.20 E-value=53 Score=18.30 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=17.9
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++...
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq2_A 11 KPYQCNE--CGKAFSQTSKLARHQRVHT 36 (46)
T ss_dssp CSSSCCS--SCCCCSSHHHHHHHGGGGC
T ss_pred CCeECCC--CCcccCCHHHHHHHHHHcC
Confidence 5678875 887664 578899987543
No 267
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.00 E-value=36 Score=17.66 Aligned_cols=23 Identities=22% Similarity=0.631 Sum_probs=16.6
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
.|+.|+. |+.... ...|..|++.
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~ 31 (36)
T 2elt_A 8 KPYKCPQ--CSYASAIKANLNVHLRK 31 (36)
T ss_dssp CSEECSS--SSCEESSHHHHHHHHHH
T ss_pred CCCCCCC--CCcccCCHHHHHHHHHH
Confidence 4678875 887764 5778889865
No 268
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.91 E-value=53 Score=16.92 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=17.1
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
.|+.|+. |+.... ...|..|++..
T Consensus 8 ~~~~C~~--C~k~f~~~~~l~~H~~~H 32 (36)
T 2elr_A 8 KTHLCDM--CGKKFKSKGTLKSHKLLH 32 (36)
T ss_dssp SSCBCTT--TCCBCSSHHHHHHHHHHH
T ss_pred CCeecCc--CCCCcCchHHHHHHHHHh
Confidence 5678875 887664 57888998653
No 269
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.83 E-value=38 Score=17.66 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=16.6
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
.|+.|+. |+... ....|..|++.
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 8 KPFKCSL--CEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CSEECSS--SSCEESCHHHHHHHHHH
T ss_pred CCccCCC--CCchhCCHHHHHHHHHH
Confidence 5678875 88776 45788889765
No 270
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.48 E-value=46 Score=18.63 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++..+
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enh_A 11 KPYECDV--CRKAFSHHASLTQHQRVHS 36 (46)
T ss_dssp SSCBCTT--TCCBCSSSHHHHHHGGGSC
T ss_pred CCcCCCC--cCchhCCHHHHHHHHHHhC
Confidence 5678875 877664 577888987543
No 271
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.20 E-value=38 Score=17.67 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=16.4
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
.|+.|+. |+... ....|..|++.
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~ 31 (36)
T 2els_A 8 KIFTCEY--CNKVFKFKHSLQAHLRI 31 (36)
T ss_dssp CCEECTT--TCCEESSHHHHHHHHHH
T ss_pred CCEECCC--CCceeCCHHHHHHHHHH
Confidence 4677875 87765 35778888775
No 272
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.13 E-value=25 Score=17.13 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=14.7
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
+|+.|+. |+.... ...|..|++.
T Consensus 2 k~~~C~~--C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvg_A 2 APYRCPL--CRAGCPSLASMQAHMRG 25 (27)
T ss_dssp CTEEETT--TTEEESCHHHHHHHHTT
T ss_pred cCcCCCC--CCcccCCHHHHHHHHHh
Confidence 3567764 776653 5678888753
No 273
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.81 E-value=15 Score=17.67 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=13.8
Q ss_pred CcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 106 RCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 106 p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
|+.|+. |+.... ...|..|++.
T Consensus 2 p~~C~~--C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 2 PYVCER--CGKRFVQSSQLANHIRH 24 (26)
Confidence 567764 776653 4677777653
No 274
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.80 E-value=52 Score=23.88 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=8.1
Q ss_pred C-CCCCCCcCC
Q 048313 51 N-KCPSCRLPI 60 (252)
Q Consensus 51 ~-~CP~Cr~~~ 60 (252)
. .||.|..+.
T Consensus 90 ~~~CP~Cgs~~ 100 (119)
T 2kdx_A 90 YGVCEKCHSKN 100 (119)
T ss_dssp TCCCSSSSSCC
T ss_pred CCcCccccCCC
Confidence 5 899998874
No 275
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.49 E-value=53 Score=17.72 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++..+
T Consensus 9 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 34 (41)
T 2ept_A 9 RVYECQE--CGKSFRQKGSLTLHERIHT 34 (41)
T ss_dssp CCEECSS--SCCEESSHHHHHHHGGGCC
T ss_pred CCeECCC--CCCCcCCHHHHHHHHHHhC
Confidence 5677874 877764 577888977533
No 276
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.44 E-value=29 Score=18.35 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=16.7
Q ss_pred cCcCCCCCCCCcccCh--hhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGSF--NQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~~--~~L~~Hl~~ 129 (252)
+|+.|+. |+..... ..|..|+..
T Consensus 8 k~~~C~~--C~k~f~~~~~~L~~H~~~ 32 (37)
T 2elp_A 8 RAMKCPY--CDFYFMKNGSDLQRHIWA 32 (37)
T ss_dssp CCEECSS--SSCEECSSCHHHHHHHHH
T ss_pred CCeECCC--CChhhccCHHHHHHHHHh
Confidence 5678874 8877654 588889764
No 277
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.14 E-value=33 Score=18.03 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.7
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|+...+
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~h~ 33 (37)
T 2elo_A 8 RSYSCPV--CEKSFSEDRLIKSHIKTNH 33 (37)
T ss_dssp CCCEETT--TTEECSSHHHHHHHHHHHC
T ss_pred CCcCCCC--CCCccCCHHHHHHHHHHHc
Confidence 5677875 88765 4578889987644
No 278
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.97 E-value=72 Score=17.66 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=17.8
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++..+
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2epz_A 11 KPFDCID--CGKAFSDHIGLNQHRRIHT 36 (46)
T ss_dssp CSBCCTT--TCCCBSSHHHHHHHHTTTT
T ss_pred CCeECCC--CCceeCCHHHHHHHHHHhC
Confidence 5678875 877664 578889987543
No 279
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=23.92 E-value=20 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=24.3
Q ss_pred CCeeeecCCcccccCCCCceEEccCCceecccChhh
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECGNGHIVCNRCCIE 48 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~~GH~~C~~C~~~ 48 (252)
.+...|--|..++ .++.....-|..+|.+|...
T Consensus 3 ~~~~~C~eC~~~~---~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 3 FDYVICEECGKEF---MDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCCEECTTTCCEE---SCSSSTTTTSCCCCTTTCSS
T ss_pred CCCCccccCCChh---hHHHHHHhCCeeechhhccc
Confidence 4567899999998 45545456688899999764
No 280
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.85 E-value=43 Score=24.24 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=24.9
Q ss_pred CeeeecCCcccccCCCC-ceEEccCCceecccChhhh-cCCCCCCCc
Q 048313 14 TVLHCFISFSSFIFTLL-SVAECGNGHIVCNRCCIEL-MNKCPSCRL 58 (252)
Q Consensus 14 ~~l~C~iC~~~l~~~~~-Pi~qc~~GH~~C~~C~~~~-~~~CP~Cr~ 58 (252)
+=|.|..|..+| .. .-+.-..|..+|..|..++ ..+|..+..
T Consensus 35 ~CF~C~~C~~~L---~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~ 78 (123)
T 2l3k_A 35 ECFKCAACQKHF---SVGDRYLLINSDIVCEQDIYEWTKINGGSGGS 78 (123)
T ss_dssp TTCBCTTTCCBC---CTTCEEEECSSSEEEGGGHHHHHHHHTCCCCC
T ss_pred ccCccccCCCCC---CCCCcEEeeCCEEEcHHHhHHHhccccCCCCC
Confidence 336777887777 42 1233357788888887664 234554443
No 281
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.81 E-value=71 Score=17.63 Aligned_cols=25 Identities=16% Similarity=0.180 Sum_probs=17.8
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++..+
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytr_A 11 KPYKCNE--CGKAFSQTSKLARHQRIHT 36 (46)
T ss_dssp CTTCCTT--TCCCCSSHHHHHHHHTTTT
T ss_pred cCcCCCC--CCCccCCHHHHHHHHHhcC
Confidence 5678875 87765 4678889987643
No 282
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.56 E-value=83 Score=17.43 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=17.4
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
.|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2yth_A 11 KPFQCEE--CGKRFTQNSHLHSHQRVH 35 (46)
T ss_dssp SSBCCSS--SCCCBSSHHHHHHHGGGG
T ss_pred cCCCCCC--CCcccCCHHHHHHHHHhc
Confidence 5778875 87766 457888997754
No 283
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.55 E-value=34 Score=20.46 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=12.4
Q ss_pred CCCcccChhhHhhHhhcccC
Q 048313 113 ACNFVGSFNQIYQHFRGVHK 132 (252)
Q Consensus 113 gC~~~g~~~~L~~Hl~~~H~ 132 (252)
+|+.......+.+|+++.++
T Consensus 22 ~CgkPi~lsAIvdHLenhC~ 41 (44)
T 2lo3_A 22 KCGKPLALTAIVDHLENHCA 41 (44)
T ss_dssp TTCCEEETTTHHHHHHHCCT
T ss_pred ccCCcchHHHHHHHHHHHhc
Confidence 56666666666666666554
No 284
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.38 E-value=17 Score=26.75 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=8.4
Q ss_pred eeeecCCcccc
Q 048313 15 VLHCFISFSSF 25 (252)
Q Consensus 15 ~l~C~iC~~~l 25 (252)
.-.|..|.+++
T Consensus 61 ~~~C~~C~~~I 71 (123)
T 2l4z_A 61 WKRCAGCGGKI 71 (123)
T ss_dssp CSBBSSSSSBC
T ss_pred CCcCcCCCCCc
Confidence 35788888888
No 285
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.38 E-value=79 Score=17.42 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=17.8
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
.|+.|+. |+... ....|..|++..+
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep1_A 11 KPYECSD--CGKSFIKKSQLHVHQRIHT 36 (46)
T ss_dssp CSSCCSS--SCCCCSSHHHHHHHHGGGS
T ss_pred CCcCCCC--CCchhCCHHHHHHHHHHhC
Confidence 5678874 87765 4678889987643
No 286
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.23 E-value=72 Score=17.66 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=17.2
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
.|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H 35 (46)
T 2yti_A 11 KPYKCNE--CGKVFTQNSHLARHRGIH 35 (46)
T ss_dssp CTTCCSS--SCCCCSSHHHHHHHHTTT
T ss_pred cCeECCC--CCcccCChhHHHHHhHhc
Confidence 5678875 87766 457888997653
No 287
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.09 E-value=79 Score=17.17 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.5
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (44)
T 2en7_A 11 KPYVCNE--CGKAFRSKSYLIIHTRTH 35 (44)
T ss_dssp SSSCCTT--TCCCCSSHHHHHHHHTTT
T ss_pred cCeECCC--CCCccCCHHHHHHHhhhc
Confidence 5778875 87765 467889998753
No 288
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.07 E-value=80 Score=17.50 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++...
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2elz_A 11 KPYKCED--CGKGYNRRLNLDMHQRVHM 36 (46)
T ss_dssp SSCBCSS--SCCBCSSHHHHHHHGGGGG
T ss_pred CCeeCcc--cCchhCCHHHHHHHHHhcC
Confidence 5678864 87765 3578888887543
No 289
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=22.86 E-value=60 Score=17.53 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.1
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++..+
T Consensus 9 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 34 (42)
T 2el5_A 9 NPYECSE--CGKAFNRKDQLISHQRTHA 34 (42)
T ss_dssp CSEECSS--SCCEESSHHHHHHHHGGGC
T ss_pred CCccCCC--cChhhCCHHHHHHHHHhcC
Confidence 5677864 877654 577888887643
No 290
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.74 E-value=76 Score=17.54 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2eq1_A 11 KPYKCNE--CGKAFRAHSNLTTHQVIH 35 (46)
T ss_dssp CCCCCTT--TTCCCSSHHHHHHHHTTT
T ss_pred CCeECCc--CChhhCCHHHHHHHHHHh
Confidence 5778875 87765 457888898753
No 291
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.73 E-value=78 Score=17.50 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=17.5
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++..+
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emg_A 11 NPFICSE--CGKVFTHKTNLIIHQKIHT 36 (46)
T ss_dssp CSCBCTT--TCCBCSSHHHHHHHHTTTS
T ss_pred CCEECCc--cCcccCCHHHHHHHHHHhC
Confidence 5678874 87766 4578888987543
No 292
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.71 E-value=76 Score=17.01 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
+|+.|+. |+.... ...|..|++..
T Consensus 9 k~~~C~~--C~k~f~~~~~L~~H~~~H 33 (42)
T 2yte_A 9 KPYSCAE--CKETFSDNNRLVQHQKMH 33 (42)
T ss_dssp CSCBCTT--TCCBCSSHHHHHHHHHHT
T ss_pred CCeECCC--CCCccCCHHHHHHHHHHh
Confidence 5678875 877664 57888998763
No 293
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.59 E-value=68 Score=17.72 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=17.5
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++..+
T Consensus 11 ~~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eov_A 11 KPYKCSD--CGKSFTWKSRLRIHQKCHT 36 (46)
T ss_dssp CSCBCSS--SCCBCSSHHHHHHHHHHHS
T ss_pred CCccCCc--cChhhCCHHHHHHHHHhcC
Confidence 5678875 877654 578888976543
No 294
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.57 E-value=66 Score=19.30 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=19.9
Q ss_pred eeecCCcccccCCCCceEEcc-CCceecccChhhhcCCC
Q 048313 16 LHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELMNKC 53 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~~~C 53 (252)
-.|..|.+.| . .-++|. ||-.+=..|..++...|
T Consensus 15 t~C~~C~~~l---~-qG~~C~~C~~~~H~~C~~~v~~~C 49 (52)
T 1faq_A 15 AFCDICQKFL---L-NGFRCQTCGYKFHEHCSTKVPTMC 49 (52)
T ss_dssp EECTTSSSEE---C-SEEECTTTTCCBCSTTSSSSSSCC
T ss_pred cCCCCccccc---c-cCCEeCCCCCeEChhHHhhCcCcC
Confidence 5688888888 6 456665 44333345555443344
No 295
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=22.52 E-value=85 Score=17.31 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=17.1
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
.|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H 35 (46)
T 2em0_A 11 KTWKCRE--CDMCFSQASSLRLHQNVH 35 (46)
T ss_dssp CCCCCSS--SCCCCSSHHHHHHHGGGG
T ss_pred cCeECCC--CCcccCCHHHHHHHHHHc
Confidence 5678864 87765 457888898763
No 296
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.41 E-value=44 Score=18.75 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++..+
T Consensus 11 k~~~C~~--C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eom_A 11 RGHRCSD--CGKFFLQASNFIQHRRIHT 36 (46)
T ss_dssp SSCCCSS--SCCCCSSHHHHHHHHHHHS
T ss_pred CCcCCCC--CCCeeCChHHHHHHHHHhC
Confidence 5678864 877664 578888877543
No 297
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.39 E-value=81 Score=20.93 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=22.7
Q ss_pred eeecCCcccccCCCCceEEcc-CCceecccChhhhcCCCC
Q 048313 16 LHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIELMNKCP 54 (252)
Q Consensus 16 l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~~~CP 54 (252)
-.|..|.+.|+.-...-++|. |+-.+=..|..++...|+
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~ 74 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCT 74 (77)
T ss_dssp EECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCC
T ss_pred cCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCC
Confidence 568888888832113456776 554444566666544554
No 298
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.34 E-value=53 Score=17.03 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=16.4
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRG 129 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~ 129 (252)
.|+.|+. |+.... ...|..|++.
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 8 LLYDCHI--CERKFKNELDRDRHMLV 31 (36)
T ss_dssp CCEECSS--SCCEESSHHHHHHHHTT
T ss_pred CCeECCC--CCCccCCHHHHHHHHHH
Confidence 5678875 877664 5678889765
No 299
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.73 E-value=19 Score=17.77 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=14.0
Q ss_pred CcCCCCCCCCccc-ChhhHhhHhhc
Q 048313 106 RCSCPLAACNFVG-SFNQIYQHFRG 129 (252)
Q Consensus 106 p~~CP~~gC~~~g-~~~~L~~Hl~~ 129 (252)
|+.|+. |+... ....|..|++.
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~ 24 (29)
T 2lvt_A 2 PCQCVM--CGKAFTQASSLIAHVRQ 24 (29)
Confidence 566764 77655 34677788764
No 300
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.09 E-value=78 Score=17.55 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.2
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytq_A 11 KPYGCSE--CGKAFSSKSYLIIHMRTH 35 (46)
T ss_dssp CSCBCSS--SCCBCSCHHHHHHHHTTT
T ss_pred CCcCCCc--cChhhCChHHHHHHHHHh
Confidence 5678874 87766 457888998763
No 301
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.03 E-value=87 Score=21.92 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=29.2
Q ss_pred CCeeeecCCcccccCCCCceEEcc-CCceecccChhhh------cCCCCCCCcC
Q 048313 13 TTVLHCFISFSSFIFTLLSVAECG-NGHIVCNRCCIEL------MNKCPSCRLP 59 (252)
Q Consensus 13 ~~~l~C~iC~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~------~~~CP~Cr~~ 59 (252)
.+...| ||...- | ...+++|. |...|=..|+... ...||.|+..
T Consensus 26 ~d~vrC-iC~~~~-~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTH-D-DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCS-C-SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCEEe-ECCCcc-C-CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 345678 898775 1 46788897 7766666676431 1479999753
No 302
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.86 E-value=76 Score=17.60 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=16.9
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~ 130 (252)
+|+.|+. |+.... ...|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2eoh_A 11 KPYECKE--CRKTFIQIGHLNQHKRVH 35 (46)
T ss_dssp CSCCCSS--SCCCCSSHHHHHHHHHHC
T ss_pred CCcCCCC--cCchhCCHHHHHHHHHHh
Confidence 5678874 877653 57888887753
No 303
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.69 E-value=80 Score=17.38 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+. |+... ....|..|++..
T Consensus 11 ~~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2eop_A 11 KPHECRE--CGKSFSFNSQLIVHQRIH 35 (46)
T ss_dssp CSCBCTT--TCCBCSSHHHHHHHHTTT
T ss_pred CCeeCCC--CCchhCCHHHHHHHHHHc
Confidence 5678875 87665 457888998763
No 304
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.58 E-value=79 Score=17.48 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=17.7
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
.|+.|+. |+... ....|..|++..+
T Consensus 11 ~~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoq_A 11 KPFKCDI--CGKSFCGRSRLNRHSMVHT 36 (46)
T ss_dssp CSCCCSS--SCCCCSSHHHHHHHHHHTT
T ss_pred CCcCCCc--CCchhCCHHHHHHHHHHcC
Confidence 5678875 87765 4678889977543
No 305
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=21.44 E-value=66 Score=21.41 Aligned_cols=9 Identities=11% Similarity=0.275 Sum_probs=5.8
Q ss_pred eeecCCcccc
Q 048313 16 LHCFISFSSF 25 (252)
Q Consensus 16 l~C~iC~~~l 25 (252)
+-|| |...+
T Consensus 5 v~C~-C~~~~ 13 (71)
T 1gh9_A 5 FRCD-CGRAL 13 (71)
T ss_dssp EEET-TSCCE
T ss_pred EECC-CCCEE
Confidence 5577 76655
No 306
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=27 Score=22.80 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=24.1
Q ss_pred eeecC--CcccccCCCCceEEcc-CCceecccChhhhcCCCCC
Q 048313 16 LHCFI--SFSSFIFTLLSVAECG-NGHIVCNRCCIELMNKCPS 55 (252)
Q Consensus 16 l~C~i--C~~~l~~~~~Pi~qc~-~GH~~C~~C~~~~~~~CP~ 55 (252)
-.|+. |...- ..| +.|. ||..||..=+..-...|+.
T Consensus 13 ~~Cs~~~Ck~~~---ll~-f~C~~C~~~FC~~HR~~e~H~C~~ 51 (63)
T 1x4v_A 13 NKCERAGCRQRE---MMK-LTCERCSRNFCIKHRHPLDHDCSG 51 (63)
T ss_dssp CCCCSTTCCCCC---SSC-CBCSSSCCBCCHHHHSTTSSCCCS
T ss_pred CCCCccCCCCCC---ccc-eECCCCCcccCcccCCccCCcCCC
Confidence 46777 88765 556 5798 9999987544333456763
No 307
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.23 E-value=45 Score=17.69 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=17.3
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcccC
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVHK 132 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 132 (252)
+|+.|+. |+... ....|..|....|.
T Consensus 8 k~~~C~~--C~k~f~~~~~L~~H~~~~H~ 34 (37)
T 2elm_A 8 HLYYCSQ--CHYSSITKNCLKRHVIQKHS 34 (37)
T ss_dssp CEEECSS--SSCEEECHHHHHHHHHHHTC
T ss_pred cCeECCC--CCcccCCHHHHHHHHHHHcc
Confidence 5678864 88776 45788889434454
No 308
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.99 E-value=75 Score=17.62 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=17.1
Q ss_pred cCcCCCCCCCCcccC-hhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVGS-FNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g~-~~~L~~Hl~~~H 131 (252)
+|+.|+. |+.... ...|..|++...
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ely_A 11 KPFKCVE--CGKGFSRRSALNVHHKLHT 36 (46)
T ss_dssp CSBCCSS--SCCCBSSTTHHHHHHHHHS
T ss_pred CCcccCc--cCcccCCHHHHHHHHHHcC
Confidence 5678874 776653 577888887643
No 309
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.97 E-value=68 Score=22.00 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=10.6
Q ss_pred eCCeeeecCCcccc
Q 048313 12 CTTVLHCFISFSSF 25 (252)
Q Consensus 12 ~~~~l~C~iC~~~l 25 (252)
+...+.|.+|..+.
T Consensus 24 em~~y~C~vCGyvY 37 (81)
T 2kn9_A 24 DYKLFRCIQCGFEY 37 (81)
T ss_dssp CCCEEEETTTCCEE
T ss_pred CcceEEeCCCCEEE
Confidence 35678888888776
No 310
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=46 Score=18.51 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=15.9
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhcc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGV 130 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~ 130 (252)
+|+.|+. |+... ....|..|++..
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H 35 (46)
T 2yts_A 11 KPYICNE--CGKSFIQKSHLNRHRRIH 35 (46)
T ss_dssp CSEECSS--SCCEESSHHHHHHHGGGT
T ss_pred cCEECCC--CChhhCChHHHHHHHHhc
Confidence 5667764 77665 357788887653
No 311
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=20.89 E-value=48 Score=23.64 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=23.3
Q ss_pred eeeeEeeccccCCCCceeeccchHHhHhhhCc
Q 048313 72 LESIQVTCENEDHGCKEKMSYSKKYDHGKACH 103 (252)
Q Consensus 72 ~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~ 103 (252)
-.+..+.|+| |...+.-.....|++.|.
T Consensus 66 ~~s~~~~C~n----C~R~vaa~RFApHLeKCm 93 (99)
T 3mhs_C 66 ESSQYIHCEN----CGRDVSANRLAAHLQRCL 93 (99)
T ss_dssp TTSCEEECTT----TCCEEEGGGHHHHHHHHS
T ss_pred cCCCeEECCC----CCCCchhhhhHHHHHHHH
Confidence 3556788997 999999999999999885
No 312
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=48 Score=18.44 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=17.4
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++..+
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq4_A 11 KLYNCKE--CGKSFSRAPCLLKHERLHS 36 (46)
T ss_dssp CCCCBTT--TTBCCSCHHHHHHHHHHCC
T ss_pred CCeECCC--CCCccCchHHHHHHHHhcC
Confidence 5678874 87765 4578888987533
No 313
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=20.54 E-value=32 Score=24.48 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=10.7
Q ss_pred CCeeeecCCcccc
Q 048313 13 TTVLHCFISFSSF 25 (252)
Q Consensus 13 ~~~l~C~iC~~~l 25 (252)
++.|.||+|..+|
T Consensus 6 LdILaCP~cK~pL 18 (97)
T 2k5r_A 6 LHLLCSPDTRQPL 18 (97)
T ss_dssp CSSCCCCTTSSCC
T ss_pred hhheECCCCCCcc
Confidence 4668899999887
No 314
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.34 E-value=71 Score=17.63 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=17.2
Q ss_pred cCcCCCCCCCCccc-ChhhHhhHhhccc
Q 048313 105 ARCSCPLAACNFVG-SFNQIYQHFRGVH 131 (252)
Q Consensus 105 ~p~~CP~~gC~~~g-~~~~L~~Hl~~~H 131 (252)
+|+.|+. |+... ....|..|++..+
T Consensus 11 k~~~C~~--C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eme_A 11 KPYVCDY--CGKAFGLSAELVRHQRIHT 36 (46)
T ss_dssp CSEECSS--SCCEESSHHHHHHHHGGGC
T ss_pred CCeECCC--CChhhCCHHHHHHHHHhcC
Confidence 5677875 87765 4578888886533
Done!