BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048318
(145 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225430645|ref|XP_002269033.1| PREDICTED: two-component response regulator ARR22 [Vitis vinifera]
gi|296085160|emb|CBI28655.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 101/145 (69%), Gaps = 5/145 (3%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
M G+ SSSK KI++ ++ L+V+DD I+ IH + + G +V+V NGKE
Sbjct: 1 MGFGKATSSSKAMKIIDTEK----KISVLIVEDDPLIQKIHKVMMAKFGTEVQVVANGKE 56
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
VDL+RSGA FD++ +D EMP+M+G EAT+E+RSMG+ IVGVTS + ++E +AFM++G
Sbjct: 57 VVDLYRSGASFDLILMDFEMPIMDGFEATKELRSMGVTSMIVGVTSRSQDSEIQAFMKSG 116
Query: 121 LDLCHTKPLSVDKILPLMEDLMKNN 145
L+ C+ KPL+ +K+ ++ +L KNN
Sbjct: 117 LNACYVKPLNAEKVTAVLNEL-KNN 140
>gi|225430664|ref|XP_002268656.1| PREDICTED: two-component response regulator ARR22 [Vitis vinifera]
gi|147770071|emb|CAN76616.1| hypothetical protein VITISV_013274 [Vitis vinifera]
Length = 131
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 89/121 (73%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
++ ALV DDD I+ IH L LG +V V NGKE +DL+RSG FD++F+D EMP+M+
Sbjct: 11 KISALVADDDTIIQKIHKALLTKLGLEVNVVANGKEVLDLYRSGTSFDLIFMDMEMPIMD 70
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
G E T+E+R+MG++ I+GVTS + ++E+EAFM +GL+ C+ KPL++ KI L++DL K
Sbjct: 71 GPEVTKELRAMGVQSIIMGVTSRDLDSEKEAFMASGLNDCYMKPLTISKISSLLQDLKKK 130
Query: 145 N 145
N
Sbjct: 131 N 131
>gi|225430668|ref|XP_002268738.1| PREDICTED: two-component response regulator ARR22 [Vitis vinifera]
Length = 130
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 86/118 (72%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDDD R IH + L +G + + ENGKEAVDL+RSGA FD++ +D EMP+M+G +
Sbjct: 13 TLIVDDDPLTRRIHKVLLTKVGLETQAVENGKEAVDLYRSGASFDLILMDLEMPIMDGPK 72
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
AT+E+R+MG++ IVGVT+ + E E++ FM +GLD C+ KPL+ D + L+E L K+N
Sbjct: 73 ATKELRAMGVQSMIVGVTARDLEVEKQMFMASGLDDCYVKPLTTDTVTALVEKLNKDN 130
>gi|224105501|ref|XP_002313833.1| extra response regulator [Populus trichocarpa]
gi|222850241|gb|EEE87788.1| extra response regulator [Populus trichocarpa]
Length = 129
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 88/121 (72%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
++ ALVVDDD I+TIHS L LG + +VA NG+EAVDL SG KFD++ +D++MP+MN
Sbjct: 9 KITALVVDDDRIIKTIHSKLLSKLGIENQVAANGEEAVDLHCSGKKFDLIVMDRDMPIMN 68
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
GIEATRE+R++GI+ IVGV++ + E E + FM AGLD KPL+ K++ ++ + N
Sbjct: 69 GIEATRELRALGIRSIIVGVSTRSLEQEIQEFMDAGLDDYQEKPLTSSKVISILHKINHN 128
Query: 145 N 145
+
Sbjct: 129 S 129
>gi|357510255|ref|XP_003625416.1| Chemotaxis protein cheY-like protein [Medicago truncatula]
gi|355500431|gb|AES81634.1| Chemotaxis protein cheY-like protein [Medicago truncatula]
Length = 140
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + K IME+ + L AL+VDDD +R IH LK G K E +NGKEAVD+
Sbjct: 2 EDQGKGKGKGIMESQDS-GTELTALIVDDDKLVRMIHQGLLKRAGVKSEAVKNGKEAVDI 60
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
+G +FDI+ +DKEMP+MNGIEAT+++RSMGI IVGV+S +EAE++ FM+AG++
Sbjct: 61 HCNGQRFDIILMDKEMPIMNGIEATKKLRSMGIGSMIVGVSSC-TEAEKQEFMEAGINDY 119
Query: 125 HTKPLSV 131
KPL++
Sbjct: 120 QVKPLTI 126
>gi|30690228|ref|NP_850864.1| response regulator 24 [Arabidopsis thaliana]
gi|332006174|gb|AED93557.1| response regulator 24 [Arabidopsis thaliana]
Length = 139
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 85/125 (68%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E P+ +L ALVVDD +TIH L LG K +V NGKEAVD++ SG +D++ +
Sbjct: 9 ELPNLAESKLTALVVDDSFVNQTIHQKLLNRLGIKNDVVTNGKEAVDVYCSGGNYDLILM 68
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
D +MP+MNGI+AT+ +R MGI+ KI GVT+ +E E++ FM+AGL+ KPL++ K+L
Sbjct: 69 DMDMPIMNGIQATKRLREMGIESKIAGVTTRANEGEKKEFMEAGLNDFQEKPLTISKLLS 128
Query: 137 LMEDL 141
++ L
Sbjct: 129 ILHKL 133
>gi|356570702|ref|XP_003553524.1| PREDICTED: two-component response regulator ARR22-like [Glycine
max]
Length = 150
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L AL+V+DD IR +H L S+G K++VAENGKEA+++ SG FD++ +D++MPVMN
Sbjct: 27 QLTALIVEDDMVIRMVHQKILNSVGLKIQVAENGKEAIEIHGSGQSFDLILMDRDMPVMN 86
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
GIEAT+ +RSMGI I GV++ + A FM+AGLD KPL++DK+ + + K
Sbjct: 87 GIEATKTLRSMGINSMITGVSTRSVAAHIREFMEAGLDDYVEKPLTLDKLTSITHKINK 145
>gi|224069957|ref|XP_002303092.1| extra response regulator [Populus trichocarpa]
gi|222844818|gb|EEE82365.1| extra response regulator [Populus trichocarpa]
Length = 138
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 18 NPSAK-NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
N S K ++ ALVVDDD +TIH L+ LG + +VA NGKEA+D+ SG KFD++ +
Sbjct: 6 NSSWKLGTKMTALVVDDDSINQTIHHRLLEQLGIENQVARNGKEAIDIHCSGKKFDLILM 65
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
D++MP+MNGIEATR++R+MGI+ I GV++ + E + FM+AGLD KPL+ KI+
Sbjct: 66 DRDMPIMNGIEATRKLRAMGIRSMIAGVSTRCVKQEIQEFMEAGLDDYQEKPLTSAKIIS 125
Query: 137 LMEDL 141
++ +
Sbjct: 126 ILHKI 130
>gi|297808661|ref|XP_002872214.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297318051|gb|EFH48473.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 139
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 85/125 (68%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E P+ +L ALVVDD +TIH L LG + +V NGKEAVD++ SG +D++ +
Sbjct: 9 ELPNLAESKLTALVVDDSFVNQTIHQKLLNRLGIENDVVTNGKEAVDVYCSGRNYDLILM 68
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
D +MP+MNGI+AT+ +R MGI+ KI GVT+ +E E++ FM+AGL+ KPL++ K+L
Sbjct: 69 DMDMPIMNGIQATKRLREMGIESKIAGVTTRANEGEKKEFMEAGLNDFQEKPLTISKLLS 128
Query: 137 LMEDL 141
++ L
Sbjct: 129 ILHKL 133
>gi|356503660|ref|XP_003520624.1| PREDICTED: two-component response regulator ARR22-like [Glycine
max]
Length = 132
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 83/117 (70%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L ALVVDD+ R IH L+S+G K + ENG+EAVD+ G +FD++ +D +MP+MN
Sbjct: 9 KLTALVVDDNKINRKIHQKLLESVGMKNQGVENGQEAVDIHCHGQRFDLILMDMDMPIMN 68
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
GIEAT+E+RSMGI IVGV+S +EAE FM+AGL+ H KPL+ K+ L++ +
Sbjct: 69 GIEATKELRSMGIGSMIVGVSSRCTEAEIRKFMEAGLNDYHEKPLNNSKLSSLLDKI 125
>gi|255560269|ref|XP_002521152.1| sensory transduction histidine kinase bacterial, putative [Ricinus
communis]
gi|223539721|gb|EEF41303.1| sensory transduction histidine kinase bacterial, putative [Ricinus
communis]
Length = 148
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 91/140 (65%), Gaps = 4/140 (2%)
Query: 9 SSKKAKIMENPSAKN----LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ K+ K++ ++KN ++ ALVVDDD R IH L++LG + + NGKEA+D+
Sbjct: 5 ARKRNKMVTTTASKNQKSRTKMTALVVDDDTTNRIIHRRLLQNLGIENQEVRNGKEAIDI 64
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
SG FD++ +D +MP+MNGIEAT+++R+MGI+ I GV++ E E + FM+AGLD
Sbjct: 65 HCSGTNFDLILMDMDMPIMNGIEATKQLRAMGIRSTIAGVSTRTMEEEVQEFMEAGLDDY 124
Query: 125 HTKPLSVDKILPLMEDLMKN 144
KPL+ K++ ++ + N
Sbjct: 125 QEKPLTSAKLISILHKINHN 144
>gi|356570698|ref|XP_003553522.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR22-like [Glycine max]
Length = 133
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 86/124 (69%), Gaps = 2/124 (1%)
Query: 20 SAKNL--RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
+ KNL +L ALVVDD+ R IH L+S+G K + ENG+EAVD+ G FD++ +D
Sbjct: 2 APKNLGTKLTALVVDDNILNRKIHXKLLESVGVKNQGVENGQEAVDIHCHGQIFDLILMD 61
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MP+MNGIEAT+E+RSMGI IVGV+S +EAE FM+AGL+ H KPL+ K+ +
Sbjct: 62 MDMPIMNGIEATKELRSMGIGSMIVGVSSRCTEAEIRKFMEAGLNDYHEKPLNNAKLSSI 121
Query: 138 MEDL 141
++ +
Sbjct: 122 LDKI 125
>gi|297833110|ref|XP_002884437.1| hypothetical protein ARALYDRAFT_477689 [Arabidopsis lyrata subsp.
lyrata]
gi|297330277|gb|EFH60696.1| hypothetical protein ARALYDRAFT_477689 [Arabidopsis lyrata subsp.
lyrata]
Length = 137
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L L+VDDD +H M +K++G + A+NG+EAV L R GA FD++ +DKEMP +
Sbjct: 17 KLNVLIVDDDPLNCRLHEMIIKTIGGISQTAKNGEEAVILHRGGASFDLILMDKEMPERD 76
Query: 85 GIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
G+ T+++R M + IVGVTSL + E ER+AFM+AGL+ C KPL+ KILPL+ L+
Sbjct: 77 GVSTTKKLREMKVTSMIVGVTSLADQEEERKAFMEAGLNHCLEKPLTKAKILPLINHLL 135
>gi|224144648|ref|XP_002325362.1| extra response regulator [Populus trichocarpa]
gi|222862237|gb|EEE99743.1| extra response regulator [Populus trichocarpa]
Length = 138
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 72/97 (74%)
Query: 38 RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97
R +H M + SLG KV+ A+NGKEAVDL +GA FD++ +D EMP+MNG ATRE+R+MG+
Sbjct: 32 RMVHRMLVTSLGLKVQEAKNGKEAVDLHINGASFDLILMDMEMPIMNGPTATRELRAMGV 91
Query: 98 KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
K I+GVTS E+ + FM+AGL+ C KPL++ +I
Sbjct: 92 KSTIIGVTSCTFESVHKDFMEAGLNHCVAKPLTIAQI 128
>gi|357510367|ref|XP_003625472.1| Extra response regulator [Medicago truncatula]
gi|355500487|gb|AES81690.1| Extra response regulator [Medicago truncatula]
Length = 130
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 75/115 (65%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
M +P +L ALVVDD+ R IH L G K + ENGKEAVD+ G KFD++
Sbjct: 1 MASPQNFVSKLTALVVDDNIINRKIHQKMLNKFGVKSQGVENGKEAVDIHWRGQKFDLIL 60
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+D +MP+MNGIEAT+E+R+MGI IVGV+S + E E FM+AGLD KPL+
Sbjct: 61 MDMDMPIMNGIEATKELRAMGICSTIVGVSSRSMEDEILKFMEAGLDEYQEKPLN 115
>gi|255562033|ref|XP_002522025.1| sensory transduction histidine kinase bacterial, putative [Ricinus
communis]
gi|223538829|gb|EEF40429.1| sensory transduction histidine kinase bacterial, putative [Ricinus
communis]
Length = 181
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+VDD+ +RTIH L G +V +A NG+EAV+ R+GA FD++ +D +MP+M+G
Sbjct: 27 LSVLLVDDNIVLRTIHKAMLTRQGMEVHLAVNGQEAVEFHRAGASFDLILMDLDMPIMDG 86
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+AT+E+R MGI I+GV + S++ER+ FM++GLD C + P S++KI
Sbjct: 87 CQATKELRDMGINCAIIGVAAC-SDSERKTFMESGLDDCISVPFSLEKI 134
>gi|356504133|ref|XP_003520853.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR22-like [Glycine max]
Length = 150
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 81/119 (68%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
K ++ AL+VDDD IR IH + L+ L + + ++GKEAVDL RSG FDI+F+DKEMP
Sbjct: 26 KETKISALIVDDDAIIRKIHKIMLERLFTEAKTVKDGKEAVDLCRSGENFDIIFMDKEMP 85
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+M+G EAT+ + +MG+K IVG+T+ ++E F+ +G + C KPL K+ ++++
Sbjct: 86 IMDGHEATKHLSAMGVKSIIVGITTRADGKDKEEFLASGSNHCFEKPLDQAKVEQVLQE 144
>gi|294463101|gb|ADE77088.1| unknown [Picea sitchensis]
Length = 252
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 86/129 (66%), Gaps = 2/129 (1%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
SK +++ E+ S+ R+ L+V+D R I L++L E AENGK AVD F+ G
Sbjct: 112 SKNSRMSEDSSSPPRRI--LLVEDTELNRIILGKVLQTLNLHCEEAENGKVAVDYFKQGR 169
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+D+V +DKEMPVM+G EATR++RSMG+K IV +T +++++ F +AG+D TKPL
Sbjct: 170 TYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIVALTGNTLQSDKDLFFEAGVDDFQTKPL 229
Query: 130 SVDKILPLM 138
S D+++ L+
Sbjct: 230 SKDRLVQLL 238
>gi|3687688|gb|AAC62225.1| response regulator protein [Brassica napus]
Length = 136
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVM 83
+L L+VDDD IH +K++G + A NG+EAV + R G+ FD++ +DKEMP
Sbjct: 15 KLNVLIVDDDPLNLIIHEKIIKAIGGISQTANNGEEAVIIHRDGGSSFDLILMDKEMPER 74
Query: 84 NGIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+G+ T+++R M +K IVGVTSL ++E ER AFM+AGL+ C KPL+ DKI+PL+ LM
Sbjct: 75 DGVSTTKKLREMEVKSMIVGVTSLADNEEERRAFMEAGLNHCLAKPLTKDKIIPLINQLM 134
>gi|356503662|ref|XP_003520625.1| PREDICTED: two-component response regulator ARR22-like [Glycine
max]
Length = 113
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 73/104 (70%)
Query: 40 IHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99
+H L S+G K++VAENGKEAV++ RSG FD++ +D++MPVMNGIEAT+ +RSMGI
Sbjct: 2 VHRKMLNSVGLKIQVAENGKEAVEIHRSGQSFDLILMDRDMPVMNGIEATKTLRSMGINS 61
Query: 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
I GV++ + A FM+AGLD KPL++ K+ ++ + K
Sbjct: 62 TITGVSTRSVTAHIREFMEAGLDDYLEKPLTLVKLTSIIHKMNK 105
>gi|357516815|ref|XP_003628696.1| Two-component response regulator ARR22 [Medicago truncatula]
gi|355522718|gb|AET03172.1| Two-component response regulator ARR22 [Medicago truncatula]
Length = 144
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 4/113 (3%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L ALVVDDD R IH M L +LG +NGKEAV++ + G KFD++ +DK+MP MN
Sbjct: 11 KLTALVVDDDAMTRRIHQMTLSNLGVNNTCVKNGKEAVEIHQYGKKFDLILMDKDMPEMN 70
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLSVDKI 134
G EAT+++R MGI IVGV+S +S E+E FM+AGLD KPL K+
Sbjct: 71 GTEATKQLRLMGISSTIVGVSS-HSMEEKEIVVKFMEAGLDEYLEKPLDKAKL 122
>gi|15229263|ref|NP_187078.1| two-component response regulator ARR22 [Arabidopsis thaliana]
gi|30679083|ref|NP_850511.1| two-component response regulator ARR22 [Arabidopsis thaliana]
gi|145331750|ref|NP_001078102.1| two-component response regulator ARR22 [Arabidopsis thaliana]
gi|51316101|sp|Q9M8Y4.1|ARR22_ARATH RecName: Full=Two-component response regulator ARR22
gi|6721158|gb|AAF26786.1|AC016829_10 putative response regulator protein (receiver component)
[Arabidopsis thaliana]
gi|21553766|gb|AAM62859.1| putative response regulator protein (receiver component)
[Arabidopsis thaliana]
gi|332640539|gb|AEE74060.1| two-component response regulator ARR22 [Arabidopsis thaliana]
gi|332640540|gb|AEE74061.1| two-component response regulator ARR22 [Arabidopsis thaliana]
gi|332640541|gb|AEE74062.1| two-component response regulator ARR22 [Arabidopsis thaliana]
Length = 142
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIE 87
L+VDDD R +H M +K++G + A+NG+EAV L R G A FD++ +DKEMP +G+
Sbjct: 25 LIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEMPERDGVS 84
Query: 88 ATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
T+++R M + IVGVTS+ + E ER+AFM+AGL+ C KPL+ KI PL+ L
Sbjct: 85 TTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLISHL 139
>gi|171702851|dbj|BAG16381.1| two-component responsive regulator family protein [Brassica rapa
var. perviridis]
Length = 121
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVM 83
+L L+VDDD IH +K++G + A NG+EAV + R G+ FD++ +DKEMP
Sbjct: 7 KLNVLIVDDDPLNLIIHEKIIKAIGGISQTANNGEEAVIIHRDGGSSFDLILMDKEMPER 66
Query: 84 NGIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+G+ T+++R M +K IVGVTSL ++E ER AFM+AGL+ C KPL+ DKI+PL
Sbjct: 67 DGVSTTKKLREMEVKSMIVGVTSLADNEEERRAFMEAGLNHCLAKPLTKDKIIPL 121
>gi|302800249|ref|XP_002981882.1| hypothetical protein SELMODRAFT_451436 [Selaginella moellendorffii]
gi|300150324|gb|EFJ16975.1| hypothetical protein SELMODRAFT_451436 [Selaginella moellendorffii]
Length = 526
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 78/111 (70%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R I L S + + AE+G +AVD+ RSGA++D++ IDKEMPVM+G EA
Sbjct: 410 LIVEDNQVNRRILKKLLASFNIESDAAEDGLQAVDMCRSGAQYDMILIDKEMPVMDGHEA 469
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TREIR+MG+K IVG+T +++R F+ AG++ TKPLS ++L L+E
Sbjct: 470 TREIRAMGVKTTIVGLTGNALDSDRNQFLAAGVNDFFTKPLSRHQLLRLLE 520
>gi|302808616|ref|XP_002986002.1| hypothetical protein SELMODRAFT_451432 [Selaginella moellendorffii]
gi|300146150|gb|EFJ12821.1| hypothetical protein SELMODRAFT_451432 [Selaginella moellendorffii]
Length = 526
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 78/111 (70%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R I L S + + AE+G +AVD+ RSGA++D++ IDKEMPVM+G EA
Sbjct: 410 LIVEDNQVNRRILKKLLASFNIESDAAEDGLQAVDMCRSGAQYDMILIDKEMPVMDGHEA 469
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TREIR+MG+K IVG+T +++R F+ AG++ TKPLS ++L L+E
Sbjct: 470 TREIRAMGVKTTIVGLTGNALDSDRNQFLAAGVNDFFTKPLSRHQLLRLLE 520
>gi|171702839|dbj|BAG16375.1| two-component responsive regulator family protein [Brassica
oleracea var. italica]
Length = 121
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVM 83
+L L+VDDD IH ++++G + A NG+EAV + R G+ FD++ +DKEMP
Sbjct: 7 KLNVLIVDDDPLNLIIHEKIIEAIGGISQTANNGEEAVIIHRDGGSSFDLILMDKEMPER 66
Query: 84 NGIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+G+ T+++R M +K IVGVTSL ++E ER AFM+AGL+ C KPL+ DKI+PL
Sbjct: 67 DGVSTTKKLREMEVKSMIVGVTSLADNEEERRAFMEAGLNHCLAKPLTKDKIIPL 121
>gi|225437883|ref|XP_002267242.1| PREDICTED: two-component response regulator ARR22 [Vitis vinifera]
gi|297744274|emb|CBI37244.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 78/117 (66%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L ALVVD D + + L+S G + +V +G++A+DL SG FD++ I +P+MN
Sbjct: 26 KLTALVVDSDIICQVLEKAILESQGIQAQVVGSGRDAIDLLASGVNFDLIIIAMVLPIMN 85
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
G+E TR+IR+MGI+ K++GVT+ + E ER AF+ AG+D KPL+ K+ ++ ++
Sbjct: 86 GVETTRQIRAMGIRSKMLGVTACSYERERRAFLDAGVDEFIEKPLTPQKLASVLREI 142
>gi|255562035|ref|XP_002522026.1| sensory transduction histidine kinase bacterial, putative [Ricinus
communis]
gi|223538830|gb|EEF40430.1| sensory transduction histidine kinase bacterial, putative [Ricinus
communis]
Length = 171
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 AKNLRLF-ALVVDDDCFIRTIHSMALKSLG-FKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
K ++F AL+VDDD +R IH L G +++ A +G+EAV+L R+GA FD++ +D
Sbjct: 15 TKGNKIFSALIVDDDRVLRRIHKKILTGQGVVEIQEAGDGQEAVELHRAGASFDLILMDL 74
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
MP+M+G +AT+E+R MGI I+GV++ E E + FM++G+D C +KPLS++K+ +
Sbjct: 75 HMPIMDGCQATKELRDMGINCTILGVSTC-YEEEHKKFMESGIDDCISKPLSLNKLASWL 133
>gi|302822149|ref|XP_002992734.1| hypothetical protein SELMODRAFT_451426 [Selaginella moellendorffii]
gi|300139475|gb|EFJ06215.1| hypothetical protein SELMODRAFT_451426 [Selaginella moellendorffii]
Length = 440
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A R L+V+D R I L++L + + AENG+ AVDL R G +D+V +DKEM
Sbjct: 304 ASQCRRKVLLVEDTRINRIILRKVLQNLNLQCDEAENGQIAVDLHRQGKSYDLVLMDKEM 363
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
PVM+G EATR +R MG+K IV +T ++++E F +AG++ TKPLS DK++ L+
Sbjct: 364 PVMDGHEATRALRMMGVKTPIVALTGNALQSDKELFFEAGVNEFQTKPLSRDKLIQLL 421
>gi|224075611|ref|XP_002304706.1| extra response regulator [Populus trichocarpa]
gi|222842138|gb|EEE79685.1| extra response regulator [Populus trichocarpa]
Length = 248
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 9/116 (7%)
Query: 29 LVVDDDCFIRTIHS--MAL----KSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
L+VDDD IR + MAL K L + + A+NGKEAV L +GA FD++ +D +MP+
Sbjct: 122 LIVDDDRTIRETNRRFMALAGTQKQLRMEFQEAKNGKEAVYLHLAGASFDLILMDNQMPI 181
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
M GI+AT+ +R MG+K +IVGVT SE +R+AF+ AGL+ C KPL+ KI +
Sbjct: 182 MTGIQATQLLRKMGVKSRIVGVT---SEPDRQAFIDAGLNNCIQKPLNPGKITEFL 234
>gi|225461235|ref|XP_002280692.1| PREDICTED: sensor protein rcsC-like [Vitis vinifera]
Length = 150
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N +L ALVVD D + + L+S G + +V +G++A+DL SGA F+++ I +P+
Sbjct: 29 NSKLTALVVDSDRICQILEKAILESQGVETQVVGSGRDALDLLASGATFNLIIIAMVLPI 88
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
MNG+E TR IR+MGI K++GVT+ + E E++AF+ AG+D KPL+ K+ ++ + M
Sbjct: 89 MNGVETTRRIRAMGICSKMLGVTACSYEREKQAFLDAGVDEFIEKPLTPQKLASILRE-M 147
Query: 143 KN 144
+N
Sbjct: 148 RN 149
>gi|302143145|emb|CBI20440.3| unnamed protein product [Vitis vinifera]
Length = 167
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N +L ALVVD D + + L+S G + +V +G++A+DL SGA F+++ I +P+
Sbjct: 29 NSKLTALVVDSDRICQILEKAILESQGVETQVVGSGRDALDLLASGATFNLIIIAMVLPI 88
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
MNG+E TR IR+MGI K++GVT+ + E E++AF+ AG+D KPL+ K+ ++ + M
Sbjct: 89 MNGVETTRRIRAMGICSKMLGVTACSYEREKQAFLDAGVDEFIEKPLTPQKLASILRE-M 147
Query: 143 KN 144
+N
Sbjct: 148 RN 149
>gi|302824141|ref|XP_002993716.1| hypothetical protein SELMODRAFT_449209 [Selaginella moellendorffii]
gi|300138440|gb|EFJ05208.1| hypothetical protein SELMODRAFT_449209 [Selaginella moellendorffii]
Length = 679
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 76/118 (64%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A R L+V+D R I L++L + + AENG+ AVDL R G +D+V +DKEM
Sbjct: 543 ASPCRRKVLLVEDTRINRIILRKVLQNLNLQCDEAENGQIAVDLHRQGKSYDLVLMDKEM 602
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
PVM+G EATR +R MG+K IV +T ++++E F +AG++ TKPLS DK++ L+
Sbjct: 603 PVMDGHEATRALRMMGVKTPIVALTGNALQSDKELFFEAGVNEFQTKPLSRDKLIQLL 660
>gi|224075609|ref|XP_002304705.1| pseudo response regulator [Populus trichocarpa]
gi|222842137|gb|EEE79684.1| pseudo response regulator [Populus trichocarpa]
Length = 223
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 76/118 (64%), Gaps = 9/118 (7%)
Query: 29 LVVDDDCFIRTIHSMAL------KSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
L+VDDD +R + + K L + + A+NGKEAV L +GA +D++ ++ MP+
Sbjct: 97 LIVDDDLTVRDTNRRLMMSVETQKQLTMEFQEAKNGKEAVYLHLAGASYDLILMENHMPI 156
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
M GI+AT+ +R MG+K +IVG++ SE++++AF+ AGLD C KPL + KI + D
Sbjct: 157 MTGIQATQRLRKMGVKSQIVGIS---SESDQQAFIDAGLDNCIQKPLDIAKITTFLSD 211
>gi|168062454|ref|XP_001783195.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665337|gb|EDQ52026.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 115
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 72/110 (65%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D R I L++L + AENG+ A+D + G +D+V +DKEMPVM+G EA
Sbjct: 3 LLVEDTRINRIILRKVLQNLNLLCDEAENGQIAIDFHKQGRTYDLVLMDKEMPVMDGHEA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
TR++R+MG+K IV +T +RE F +AG+D TKPLS DK++ L+
Sbjct: 63 TRQLRNMGVKTPIVALTGNALTTDREMFFEAGVDDFQTKPLSRDKLVQLL 112
>gi|147816069|emb|CAN61539.1| hypothetical protein VITISV_030743 [Vitis vinifera]
Length = 157
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N +L ALVVD D + + L+S G + +V +G++A+DL SGA F+++ I +P+
Sbjct: 29 NSKLTALVVDSDRICQILEKAILESQGVETQVVGSGRDALDLLASGATFNLIIIAMVLPI 88
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MNG+E TR IR+MGI K++GVT+ + E E++AF+ AG+D KPL K+
Sbjct: 89 MNGVETTRRIRAMGICSKMLGVTACSYEREKQAFLDAGVDEFIEKPLISSKV 140
>gi|255560271|ref|XP_002521153.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223539722|gb|EEF41304.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 166
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R+ AL+VD+ R + L+ G + + E + A+DL SG FD++ ID +PV+N
Sbjct: 46 RMSALLVDNHRCCRLVQMGMLQYYGIETQAVETAQAAIDLLTSGHLFDLIVIDSRLPVLN 105
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
GIE TR IR+MG+ KI G+ + E +R+AF+ AG D KPL ++++P++
Sbjct: 106 GIETTRHIRTMGVCSKIAGLIGSSRERDRQAFLDAGADAVFEKPLVPERLVPML 159
>gi|168062416|ref|XP_001783176.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665318|gb|EDQ52007.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 89
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 55 AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114
AENG+ AVDL + G +D+V +DKEMPVM+G EATR++R+MG+K IV +T ++RE
Sbjct: 3 AENGQIAVDLHKQGRTYDLVLMDKEMPVMDGHEATRQLRNMGVKTPIVALTGNALTSDRE 62
Query: 115 AFMQAGLDLCHTKPLSVDKILPLM 138
F +AG+D TKPLS DK++ L+
Sbjct: 63 LFFEAGVDDFQTKPLSRDKLVQLL 86
>gi|224057730|ref|XP_002299304.1| predicted protein [Populus trichocarpa]
gi|222846562|gb|EEE84109.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGF------KVEVAENGKE 60
E S + +M+N S LVV+DD ++R ++ L GF KVE+A NGKE
Sbjct: 112 EEGSDSSTMMKNFSV-------LVVEDDSYLRNLYRRLLNVFGFLNDFQMKVEMAANGKE 164
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA--EREAFMQ 118
AVD+ R G +++ +D + N +E RE+R++G++ I+G TS +EA +++ FM+
Sbjct: 165 AVDVLRGGVSLNLIIMDMD-RCTNALEEIRELRALGVESNIIGYTSSTAEAPDQQKTFME 223
Query: 119 AGLDLCHTKPLSVDKILPLMEDLMKNN 145
AGL+ KP++ + I P + DL NN
Sbjct: 224 AGLNGWFQKPMTFEIITPFLSDLTNNN 250
>gi|168000645|ref|XP_001753026.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695725|gb|EDQ82067.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 89
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 55 AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114
AENG+ AVD + G +++V +DKEMPVM+G EATR++R+MG+K IV +T +RE
Sbjct: 3 AENGQIAVDFHKEGRTYNLVLMDKEMPVMDGHEATRQLRNMGVKTPIVALTGNALTTDRE 62
Query: 115 AFMQAGLDLCHTKPLSVDKILPLM 138
F +AG+D HTKPLS DK++ L+
Sbjct: 63 LFFKAGVDDFHTKPLSRDKLVQLL 86
>gi|436840344|ref|YP_007324722.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432169250|emb|CCO22618.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 717
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 75/114 (65%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + S L GF+VE AENG EA+++ +SG FD++ +D +MP M+G+EA
Sbjct: 601 LLAEDNATNQVYISHFLTEEGFQVETAENGLEALEMLKSGGPFDLILMDVQMPEMDGLEA 660
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T++IR G I I+ +T+ E +RE F+++G+D +KP+ +D++ L+ L+
Sbjct: 661 TKKIRDSGDDIPIIALTAYAMEGDREKFLKSGMDAYSSKPVKIDELTKLINKLV 714
>gi|405117468|gb|AFR92243.1| two-component sensor molecule [Cryptococcus neoformans var. grubii
H99]
Length = 1213
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G+S + K E+P A+ + L +LVVDDD R + S L LG V AENGK A ++
Sbjct: 1040 GKSGQPETK--EDPPAE-MPLSSLVVDDDKLTRMLMSRMLTRLGHYVTTAENGKIAAEMI 1096
Query: 66 RS-------GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ 118
+ KFDIVF+D +MP+M+G+E R +R M I IVG T +++ +M
Sbjct: 1097 KDMFENKEGAVKFDIVFLDNQMPLMSGVEVARAVREMNCPIYIVGCTGNALREDQDEYMA 1156
Query: 119 AGLDLCHTKPLSVDKILPLMED 140
AG D TKP+ ++ ++ D
Sbjct: 1157 AGADTILTKPIHQKHLIEMIRD 1178
>gi|321251195|ref|XP_003191987.1| two-component sensor molecule [Cryptococcus gattii WM276]
gi|317458455|gb|ADV20200.1| Two-component sensor molecule, putative [Cryptococcus gattii WM276]
Length = 1208
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
+ML G ++ + E+P A+ + L +LVVDDD R + S L LG V AENGK
Sbjct: 1029 IMLNAG-GVQRQPETKEDPPAE-MPLSSLVVDDDKLTRMLMSRMLTRLGHHVTTAENGKI 1086
Query: 61 AVDLFRS-------GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113
A ++ + KFDIVF+D +MP+M+G+E R +R M I IVG T ++
Sbjct: 1087 ASEMIKDMIENKEGSVKFDIVFLDNQMPLMSGVEVARAVREMNCPIYIVGCTGNALREDQ 1146
Query: 114 EAFMQAGLDLCHTKPLSVDKILPLMED 140
+ +M AG D TKP+ ++ ++ D
Sbjct: 1147 DEYMAAGADTILTKPIHQKHLIEMIRD 1173
>gi|58258225|ref|XP_566525.1| two-component sensor molecule [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106161|ref|XP_778091.1| hypothetical protein CNBA0940 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260794|gb|EAL23444.1| hypothetical protein CNBA0940 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222662|gb|AAW40706.1| two-component sensor molecule, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|125987888|dbj|BAF47083.1| CnHHK7 [Cryptococcus neoformans var. neoformans]
Length = 1211
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 15/153 (9%)
Query: 3 LGEGESSSKKAK---IMENPSAKN-----LRLFALVVDDDCFIRTIHSMALKSLGFKVEV 54
+G G+++ K K + E P K + L +LVVDDD R + S L LG V
Sbjct: 1024 MGVGQAAEIKLKTRGMQEQPETKEDPPAEMPLSSLVVDDDKLTRMLMSRMLTRLGHHVTT 1083
Query: 55 AENGKEAV----DLF--RSGA-KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107
AENGK A D+F + GA KFDIVF+D +MP+M+G+E R +R M I IVG T
Sbjct: 1084 AENGKIASEMIKDMFENKEGAIKFDIVFLDNQMPLMSGVEVARAVREMNCPIYIVGCTGN 1143
Query: 108 NSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+++ +M AG D TKP+ ++ ++ D
Sbjct: 1144 ALREDQDEYMAAGADTILTKPIHQKHLIEMIRD 1176
>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 719
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 78/126 (61%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E + K L L+ +D+ + + L GF+VE AENG EA+DL + FD++ +
Sbjct: 589 EGKNDKGLAARILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILM 648
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
D +MP M+G+EAT++IR G +I I+ +T+ E +RE F+ G+D +KP+++D+++
Sbjct: 649 DVQMPEMDGLEATKKIREQGNEIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQ 708
Query: 137 LMEDLM 142
++ L+
Sbjct: 709 IIGKLV 714
>gi|242075124|ref|XP_002447498.1| hypothetical protein SORBIDRAFT_06g002010 [Sorghum bicolor]
gi|241938681|gb|EES11826.1| hypothetical protein SORBIDRAFT_06g002010 [Sorghum bicolor]
Length = 132
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 13/124 (10%)
Query: 28 ALVVDD---DCFI--RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
ALVV+D DC I R +H L K ENGK+AVDLF G FDIV +DK+MP+
Sbjct: 12 ALVVEDIKVDCVILMRMLHK-----LNCKATAVENGKKAVDLFVEGKSFDIVLLDKDMPI 66
Query: 83 MNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
M+G EA +IR+MG ++KIVGV++ +EAFMQAG D+ KP+ + + ++E +
Sbjct: 67 MSGPEAVAKIRAMGATEVKIVGVSA--DFGAQEAFMQAGADVFVPKPVKFETLKAMLEVV 124
Query: 142 MKNN 145
+ N
Sbjct: 125 ISKN 128
>gi|326515860|dbj|BAK07176.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 134
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 82/128 (64%), Gaps = 3/128 (2%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
ME + + + AL+V+D R + S L ++ +V +A NGKEAV+LF G KFDIV
Sbjct: 1 MELNAKRTTSIKALLVEDIEVCRLVLSTILLAMNCEVTLAVNGKEAVELFLEGKKFDIVL 60
Query: 76 IDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+DK+MP+M G EA +IR+MG +KIVGV++ + EAFM AG D KP+ + +
Sbjct: 61 LDKDMPIMTGPEAVVKIRAMGEGDVKIVGVSA--DDHAMEAFMNAGADAFVPKPMRREVL 118
Query: 135 LPLMEDLM 142
+P++++++
Sbjct: 119 IPIIQEII 126
>gi|224057728|ref|XP_002299303.1| predicted protein [Populus trichocarpa]
gi|222846561|gb|EEE84108.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 86/143 (60%), Gaps = 17/143 (11%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHS-------MALKSLGFKVEVAENGK 59
E S K K+ P + L+V+ D R IH+ + +LG K +VAENG+
Sbjct: 210 EGSRKGQKLGHEPH----KFSVLLVEYDTSAR-IHNKTQIIQFIGRNNLGVKFQVAENGQ 264
Query: 60 EAVDLF-RSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAER-EA 115
+AVDL R A F+++ +D +MPV G EATR +R++G+K KIVG +S SE+E+ +
Sbjct: 265 QAVDLHSRDKASFNLILMDMDMPVHVATGPEATRSLRALGVKSKIVGFSS-ESESEKIDQ 323
Query: 116 FMQAGLDLCHTKPLSVDKILPLM 138
F+ AGL+ C KPL+V+KI P +
Sbjct: 324 FISAGLNGCFKKPLTVEKIAPFL 346
>gi|356570684|ref|XP_003553515.1| PREDICTED: two-component response regulator ARR22-like [Glycine
max]
Length = 103
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 9/94 (9%)
Query: 52 VEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN-S 109
V A+NGKEAVDL R +G FD++ +DK+MP+MNGI+AT+E+RS GI KI+GV+S +
Sbjct: 10 VTAAKNGKEAVDLHRINGQSFDLILMDKDMPIMNGIQATKELRSTGISSKIIGVSSSSRE 69
Query: 110 EAEREAFMQAGLDLCHTKPLS-------VDKILP 136
E+ + F++AGLD + KPL+ +DKI P
Sbjct: 70 ESNVQEFVEAGLDDYYMKPLTEEMLREILDKIKP 103
>gi|224053442|ref|XP_002297820.1| extra response regulator [Populus trichocarpa]
gi|222845078|gb|EEE82625.1| extra response regulator [Populus trichocarpa]
Length = 336
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFK------VEVAENGKEAV 62
+ +K + +E+ K LVV D +R L LG++ V VA+NGKEAV
Sbjct: 197 NDQKTQSVESVDTKGNNFSVLVVHDSRDLRETRQRLLVLLGYQKKLQMDVSVAKNGKEAV 256
Query: 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD 122
L +GA FD++ +D MP M+GIEA +R MG++ +IVGVT E +R AFM +G D
Sbjct: 257 YLHLAGASFDMIIMDDLMPFMDGIEAINLLRRMGVESRIVGVT---GEFKRLAFMDSGAD 313
Query: 123 LCHTKPLSVDKILPLMED 140
C KPL+++K+ + D
Sbjct: 314 SCIIKPLTLEKLAAVFRD 331
>gi|414588030|tpg|DAA38601.1| TPA: hypothetical protein ZEAMMB73_077889 [Zea mays]
Length = 187
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 9/131 (6%)
Query: 13 AKIMENPSAKNLRLFALVVDD---DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
A I+++ + ALVV+D DC I +H L L + ENGKEAVDLF G
Sbjct: 52 ASIIQSNEGSSAPTRALVVEDIKVDCVI-LMH--MLHKLQCEATAVENGKEAVDLFVEGK 108
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
FDIV DK+MPVM+G EA +IR+MG +++IVGV++ REAFM+AG D+ KP
Sbjct: 109 TFDIVLSDKDMPVMSGPEAVAKIRAMGATEVRIVGVSA--DFGGREAFMRAGADVFVPKP 166
Query: 129 LSVDKILPLME 139
+ ++ + ++E
Sbjct: 167 VKLETLRSMLE 177
>gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 650
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E E + + E + RL LVVDD+ +T+ L+ G +V VAENG++AV L
Sbjct: 510 EREGGAGASGTSEAEAEAESRLHVLVVDDNALNQTLARTLLQRRGHRVTVAENGQQAVAL 569
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI---KIKIVGVTSLNSEAEREAFMQAGL 121
G+ FD V +D MP M+G+ ATR IR+MG+ ++ IVG+T+ RE ++ +G+
Sbjct: 570 VARGS-FDAVLMDVHMPTMDGLAATRAIRAMGLSASQLPIVGLTASVVNDNREEYLASGM 628
Query: 122 DLCHTKPLSVDKILPLM 138
+ C KP V ++ ++
Sbjct: 629 NDCIGKPFRVAELFAVL 645
>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 763
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E+ S +A + + KN LF LVV+D+ + + S L+S G +VEVA NG EA++L
Sbjct: 514 EAESNQAINQKADTEKNPSLFILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLD 573
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLD 122
+D+VF+D MPVM+G+E TR IR G I I+ +T+ +RE F+ AG+D
Sbjct: 574 KN-NYDLVFMDILMPVMDGLETTRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMD 632
Query: 123 LCHTKPLSVDKI 134
KP+ ++++
Sbjct: 633 DYLAKPVQMEEL 644
>gi|171685560|ref|XP_001907721.1| hypothetical protein [Podospora anserina S mat+]
gi|170942741|emb|CAP68394.1| unnamed protein product [Podospora anserina S mat+]
Length = 1262
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 13/145 (8%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR- 66
++S ++PSA L L+VDD+ + + ++ L A NG EA L++
Sbjct: 1113 TTSNAGGTAQSPSAPTRHL--LLVDDNPINIKLLTHVVRKLNHTFLTAANGLEAAQLYKK 1170
Query: 67 ----SGAKFDIVFIDKEMPVMNGIEATREIRSM----GI--KIKIVGVTSLNSEAEREAF 116
GA+FD+VF+D MP+MNG EATREIR M G+ K+KIV +T L+S+ R
Sbjct: 1171 SLEGQGARFDLVFMDISMPIMNGFEATREIRQMEANVGVVDKVKIVALTGLSSDLSRNEA 1230
Query: 117 MQAGLDLCHTKPLSVDKILPLMEDL 141
+G DL TKP+ ++ + ++ +L
Sbjct: 1231 TASGCDLFLTKPVKMNVVREVLNEL 1255
>gi|242075126|ref|XP_002447499.1| hypothetical protein SORBIDRAFT_06g002020 [Sorghum bicolor]
gi|241938682|gb|EES11827.1| hypothetical protein SORBIDRAFT_06g002020 [Sorghum bicolor]
Length = 129
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 13/113 (11%)
Query: 28 ALVVDD---DCFI--RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
ALVV+D DC I +H + +++ ENGKEAVDLF G FDIVF DK+MP+
Sbjct: 9 ALVVEDIKVDCMILMHMLHKLNCEAIA-----VENGKEAVDLFLEGKTFDIVFSDKDMPI 63
Query: 83 MNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G EA +IR+MG ++KIVGV++ +EAFM AG D+ KP+ ++ +
Sbjct: 64 MSGPEAVAKIRAMGATEVKIVGVSA--DFGGQEAFMHAGADVFLPKPVKLETL 114
>gi|224072596|ref|XP_002303798.1| predicted protein [Populus trichocarpa]
gi|222841230|gb|EEE78777.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 9/109 (8%)
Query: 29 LVVDDDCFIRTI---HSMAL---KSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
L+V DD R I ++M + K + + A NGKEAV L +GA FD++ +D +MP+
Sbjct: 327 LIVHDDRDARDIIQRYTMPVGTEKHFTLEFQEARNGKEAVYLHLAGASFDLIIMDDQMPI 386
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
M GI+AT+ +R MG+K I+GVT SE++++AF+ AG D C PL
Sbjct: 387 MTGIQATQLLRKMGVKSPIIGVT---SESDQQAFIDAGADECLKMPLDT 432
>gi|224053438|ref|XP_002297819.1| extra response regulator [Populus trichocarpa]
gi|222845077|gb|EEE82624.1| extra response regulator [Populus trichocarpa]
Length = 328
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 13/129 (10%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFK--------VEVAENGKEAVDLFRSGAKFD 72
++ ++ LVVDD+C R S+ + FK V+VA+NGKEAV L +GA FD
Sbjct: 198 SEGIKYCVLVVDDNCEDR--ESLRELLMSFKSQTTPTMDVQVAKNGKEAVYLHLAGASFD 255
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
++ +D MPVMNGIEAT+++ MG+ IVGV + ++AF+ AG+D KPL+
Sbjct: 256 MIVMDDLMPVMNGIEATKQLFGMGVISFIVGV---GDDTVKQAFIDAGIDQYIEKPLTPA 312
Query: 133 KILPLMEDL 141
K+ L DL
Sbjct: 313 KVADLFPDL 321
>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1102
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E+ ++ + S + ++ L+ DD+ + + S L +G V VA NGKEA+D
Sbjct: 802 EAGGARSIVTPYTSEETQKIHILLADDNDINQKVASTNLIKMGHSVVVANNGKEALDAIV 861
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEA---EREAFMQAGL 121
G ++D++ +D +MP+M+G+EATR+IR K+K + +L + A +RE F++AG+
Sbjct: 862 KGEQYDLILMDGQMPIMDGMEATRKIRRFEAAHKVKRTPIVALTAHAMTGDREKFIEAGM 921
Query: 122 DLCHTKPLSVDKILPLMEDL 141
D TKPL D + +++++
Sbjct: 922 DDYLTKPLQRDALTKVIQNV 941
>gi|115455253|ref|NP_001051227.1| Os03g0742300 [Oryza sativa Japonica Group]
gi|40539028|gb|AAR87285.1| putative response regulator protein(receiver component) [Oryza
sativa Japonica Group]
gi|108711007|gb|ABF98802.1| Response regulator receiver domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|108711008|gb|ABF98803.1| Response regulator receiver domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549698|dbj|BAF13141.1| Os03g0742300 [Oryza sativa Japonica Group]
gi|125545677|gb|EAY91816.1| hypothetical protein OsI_13457 [Oryza sativa Indica Group]
gi|125587875|gb|EAZ28539.1| hypothetical protein OsJ_12520 [Oryza sativa Japonica Group]
Length = 127
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK--VEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVMNG 85
L+V+D+ R + ALK+ G V+ AENG+ AV R + A +D+V +DK+MPVM+G
Sbjct: 9 LLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQMPVMDG 68
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
EATR IR MG+ IV V+S A+ +AF+ AG D +KPLS +K+
Sbjct: 69 HEATRRIRGMGVTTPIVAVSSDGLPADVDAFITAGADDFTSKPLSKEKL 117
>gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
Length = 949
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
+E+ A N + LVVDD R + S L SLG++V+ A++G +A+++ S + DIV
Sbjct: 816 IEDKRASNEDILILVVDDHPINRMLLSDQLGSLGYRVKTAQDGVDALNVL-SRNEIDIVL 874
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D MP M+G T+ +R +G+ +VGVT+ E++ M+AG+D C +KP+++D +
Sbjct: 875 TDVNMPNMDGYRLTQRLRQLGLTFPVVGVTANALAEEKQRCMEAGMDNCLSKPVTMDTL 933
>gi|93007292|ref|YP_581729.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
cryohalolentis K5]
gi|92394970|gb|ABE76245.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
cryohalolentis K5]
Length = 974
Score = 81.6 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVF 75
+N S + + LVV+D + I L LG++ VAE+G++A+D+ ++ + D++
Sbjct: 846 DNRSNEIISPLILVVEDSPTNQKIACKMLAKLGYRSVVAEDGQQALDILQAQRQEIDLIL 905
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+D MPVM+G++AT+ IR+ G I IV +T+ N+E +R A ++ G+D KP++ DK+
Sbjct: 906 MDCRMPVMDGLQATQAIRAQGDDIPIVALTANNTEEDRSACLKVGMDEFLAKPINKDKLQ 965
Query: 136 PLMEDLMK 143
++ L+K
Sbjct: 966 DVLTALIK 973
>gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
Length = 875
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L LV +D+ F R + + L++ G +V A NG+EAV+++RSG + ++ +D MP ++
Sbjct: 753 QLTILVAEDNDFNRLLLTDLLQNHGHRVLAASNGREAVEIYRSG-QCQLILMDMMMPELD 811
Query: 85 GIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G+EATR IR + G +I IVGVT+ E E + AG+D C TKP+ + +L
Sbjct: 812 GLEATRAIRRLEAEGGSRIPIVGVTAGTQPEELEKCLAAGMDCCFTKPVDIKSLL 866
>gi|406695787|gb|EKC99087.1| two-component sensor molecule [Trichosporon asahii var. asahii CBS
8904]
Length = 771
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIVFI 76
+ ++ L LVVDDD R + ++ LG +V +A NG EA+ + ++ G DIVF+
Sbjct: 643 SSSIGLNTLVVDDDELTRDLMMRTVRRLGHQVILARNGMEALRVLKAAYEDGNPIDIVFL 702
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D +MP M+G+E R IR++ + IVG T + +++ + QAG D TKP+SV I
Sbjct: 703 DNQMPAMSGVETARAIRALQWDVYIVGCTGNALQEDQDEYKQAGADAIVTKPVSVAAI 760
>gi|262171514|ref|ZP_06039192.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
gi|261892590|gb|EEY38576.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
Length = 573
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
A + +N AKN + LVV+D + + + L +G+ V +AENG EA++L FD
Sbjct: 441 AYLKQNTIAKNHHI--LVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFD 498
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+V +D MP+M+GI ATR+IRS I I I+ +T+ + ++++ + AG++ KP+
Sbjct: 499 LVLMDISMPIMDGIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGK 558
Query: 133 KILPLMEDLMKNN 145
I+ ++ + NN
Sbjct: 559 DIMNVVNRFLPNN 571
>gi|426405408|ref|YP_007024379.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
str. Tiberius]
gi|425862076|gb|AFY03112.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 838
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D + + L LG KVE+A NG+ A++ RS + +D++F+D +MPVMNG EA
Sbjct: 603 LVAEDQIVNQRVAESYLTKLGLKVEIAGNGQIALEKARSKS-YDLIFMDCQMPVMNGYEA 661
Query: 89 TREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T+++R ++G K +V +T+ + ER++ +AG+D TKPL + K++ + +K
Sbjct: 662 TKQLRLLENTLGRKTPVVALTAEGTSGERKSCYEAGMDDFLTKPLELHKLIETLHRWLK 720
>gi|258623303|ref|ZP_05718309.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573]
gi|424809727|ref|ZP_18235100.1| sensor histidine kinase/response regulator [Vibrio mimicus SX-4]
gi|258584435|gb|EEW09178.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573]
gi|342322824|gb|EGU18611.1| sensor histidine kinase/response regulator [Vibrio mimicus SX-4]
Length = 573
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
A + +N AKN + LVV+D + + + L +G+ V +AENG EA++L FD
Sbjct: 441 AYLKQNTIAKNHHI--LVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFD 498
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+V +D MP+M+GI ATR+IRS I I I+ +T+ + ++++ + AG++ KP+
Sbjct: 499 LVLMDISMPIMDGIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGK 558
Query: 133 KILPLMEDLMKNN 145
I+ ++ + NN
Sbjct: 559 DIMNVVNRFLPNN 571
>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1349
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
GE + +MEN +L L+V+D + + ++++G V VA+NG+E ++
Sbjct: 1075 GESRKMVTRHTLMENS-----KLRVLLVEDQMVNQKVAVKIIQNMGHGVVVADNGQEGLE 1129
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQ 118
F++GA FDIVF+D +MPVM+G+ AT IR + +I I+ T+ E ++E F+
Sbjct: 1130 AFKNGA-FDIVFMDVQMPVMDGLAATAAIRKLESEENRARIPIIAFTAHAMEGDKERFLS 1188
Query: 119 AGLDLCHTKPLSVDKILPLMEDLMKNN 145
AG+D TKP+ D + +ME K +
Sbjct: 1189 AGMDDYLTKPVKKDALTRVMEKATKRS 1215
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
ME P K LVVDD+ IR +AL+ G++V+ AENG++A+ + S D +
Sbjct: 1 MERPPGK-----ILVVDDELVIRKSLRLALEDEGYEVQEAENGQDAL-VMVSKNPPDCIL 54
Query: 76 IDKEMPVMNGI 86
+D MPVM+G+
Sbjct: 55 LDLRMPVMDGL 65
>gi|401884302|gb|EJT48470.1| two-component sensor molecule [Trichosporon asahii var. asahii CBS
2479]
Length = 738
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIVFI 76
+ ++ L LVVDDD R + ++ LG +V +A NG EA+ + ++ G DIVF+
Sbjct: 610 SSSIGLNTLVVDDDELTRDLMMRTVRRLGHQVILARNGMEALRVLKAAYEDGNPIDIVFL 669
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D +MP M+G+E R IR++ + IVG T + +++ + QAG D TKP+SV I
Sbjct: 670 DNQMPAMSGVETARAIRALQWDVYIVGCTGNALQEDQDEYKQAGADAIVTKPVSVAAI 727
>gi|224053436|ref|XP_002297818.1| extra response regulator [Populus trichocarpa]
gi|222845076|gb|EEE82623.1| extra response regulator [Populus trichocarpa]
Length = 209
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFK------VEVAENGKEAVDLFRSGAKFDIVFIDKE 79
L L+VDDD +R A+ S G + V+ A+NG+EAV L GA FDI+ +D +
Sbjct: 93 LSVLIVDDDRAVRDSIRRAMMSYGAQKQFIIDVQEAKNGREAVYLHLGGASFDIILMDSQ 152
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
MPVM G EA +++R MG+K +I+GV+ + E+ AF + ++ KPL+++KI +
Sbjct: 153 MPVMKGHEAVKKLRQMGVKSRIIGVS---YQFEKPAFRGSSINKWIKKPLNLEKIAAIF 208
>gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
Length = 838
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 78/126 (61%), Gaps = 8/126 (6%)
Query: 25 RLFA---LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
R+F+ LV +D + + L LG KVE+A NG+ A++ RS + +D++F+D +MP
Sbjct: 596 RIFSGHVLVAEDQIVNQRVAESYLTKLGLKVEIAGNGQIALEKARSKS-YDLIFMDCQMP 654
Query: 82 VMNGIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
V+NG EAT+++R ++G K +V +T+ + ER++ +AG+D TKPL + K++
Sbjct: 655 VLNGYEATKQLRLLENTLGRKTPVVALTAEGTSGERKSCYEAGMDDFLTKPLELHKLIET 714
Query: 138 MEDLMK 143
+ +K
Sbjct: 715 LHRWLK 720
>gi|94271091|ref|ZP_01291888.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93450562|gb|EAT01700.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 421
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L LV +D+ F R + + L++ G +V A NG+EAV+++RSG + ++ +D MP ++
Sbjct: 299 QLTILVAEDNEFNRLLLTDLLQNHGHRVLAASNGREAVEIYRSG-QCQLILMDMMMPELD 357
Query: 85 GIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G+EATR IR + G +I IVGVT+ E + + AG+D C TKP+ + +L
Sbjct: 358 GLEATRAIRRLEAQGGSRIPIVGVTAGTQPEEIQKCLAAGMDCCFTKPVDIKSLL 412
>gi|242075120|ref|XP_002447496.1| hypothetical protein SORBIDRAFT_06g002000 [Sorghum bicolor]
gi|241938679|gb|EES11824.1| hypothetical protein SORBIDRAFT_06g002000 [Sorghum bicolor]
Length = 105
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 45 LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-IKIKIVG 103
L L + ENGKEA+DLF G FDIVF+DK+MP+M G + +IR+MG K+KIVG
Sbjct: 2 LHKLNYVATAVENGKEAIDLFVEGKTFDIVFLDKDMPIMLGPKTVAKIRAMGATKVKIVG 61
Query: 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
V++ REAFMQAG D+ K + ++ + +++
Sbjct: 62 VST--DFGAREAFMQAGADVFVPKLMKLETLEAMLQ 95
>gi|374301624|ref|YP_005053263.1| Hpt sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332554560|gb|EGJ51604.1| Hpt sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 600
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+ KKA +++P + L L+V+D+ + L + G V VAENG+EAVD+ +
Sbjct: 328 ARQKKATQLDSPDSGPEALSVLLVEDNKVNQLFTREMLLAEGHSVIVAENGQEAVDIL-A 386
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLD 122
+FDIV +D +MPVM+G+EATR IR + + I+ +T+ + +RE F+QAG+
Sbjct: 387 RQRFDIVLMDIQMPVMDGVEATRTIRDPSSAVLDHDVPIIALTAHAIKGDRERFIQAGMT 446
Query: 123 LCHTKPLSVDKILPLMEDLMKN 144
TKP+ K+ +M L +
Sbjct: 447 DYLTKPVDFRKLFGIMTTLFPS 468
>gi|392403459|ref|YP_006440071.1| integral membrane sensor hybrid histidine kinase [Turneriella parva
DSM 21527]
gi|390611413|gb|AFM12565.1| integral membrane sensor hybrid histidine kinase [Turneriella parva
DSM 21527]
Length = 832
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 5/128 (3%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E ++ + A E + LR+ A V+DD + + + L+SLG+++ +AENG+EAV L
Sbjct: 689 ENDAPTDSAAGAEFAARYPLRILA--VEDDAVNQVVITETLRSLGYEISLAENGREAVAL 746
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLD 122
+ FD++F+D +MP M+GIEAT IR++ G ++ IV +T+ +S R AG+D
Sbjct: 747 AENKI-FDLIFMDVQMPEMSGIEATERIRALTDGDRVAIVALTADSSAENRHKCFAAGID 805
Query: 123 LCHTKPLS 130
TKP S
Sbjct: 806 DFLTKPFS 813
>gi|258626569|ref|ZP_05721405.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603]
gi|258581160|gb|EEW06073.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603]
Length = 573
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
S K + ++ AKN + LVV+D + + + L +G+ V +AENG EA++L
Sbjct: 436 SKDKITYLQKSTIAKNYHI--LVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEK 493
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
FD+V +D MP+M+GI ATR+IRS I I I+ +T+ + ++++ + AG++ K
Sbjct: 494 SNAFDLVLMDISMPIMDGIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLK 553
Query: 128 PLSVDKILPLMEDLMKNN 145
P+ I+ ++ + NN
Sbjct: 554 PIRGKDIMNVVNRFLPNN 571
>gi|357167243|ref|XP_003581069.1| PREDICTED: two-component response regulator ARR22-like
[Brachypodium distachyon]
Length = 134
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 5/123 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV++D F L+ + A+NG+EAVDL+ G KFDI+ DKEMP+M G
Sbjct: 10 LKVLVIEDSEFQSWFLLAKLRRFSCETTRAKNGREAVDLYLEGKKFDIILCDKEMPIMKG 69
Query: 86 IEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM-- 142
EA +IRSMG ++KIVG+++ +S A E FM AG D+ KP+ + + ++++++
Sbjct: 70 PEAIVKIRSMGSTEVKIVGMSA-DSNAPEE-FMSAGADMFVPKPMDFEVLEAIIKEVINK 127
Query: 143 KNN 145
KNN
Sbjct: 128 KNN 130
>gi|427403950|ref|ZP_18894832.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
gi|425717352|gb|EKU80316.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
Length = 1371
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 19 PSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
P A LR L L+V+D+ + + L G +E+A NG+ A+ + + A FD+V +D
Sbjct: 1024 PLAGALRGLRVLLVEDNQINQEVAGFILAHAGATLEIAANGRAALSMLQEDAAFDVVLMD 1083
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MPVMNG EAT IR+ G+ + IV +T+ + +R+ + AG+ KP+ VD ++
Sbjct: 1084 LQMPVMNGFEATAAIRAAGLDLPIVAITANAMDEDRQRSLDAGMQAHLAKPIDVDALVAT 1143
Query: 138 MEDLMKN 144
+ + ++
Sbjct: 1144 LSRVTQH 1150
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV DD+ R + A + G++V+ A +G A++ R GA++DI F+D MP ++G
Sbjct: 889 LRVLVADDNASARAALAAACAAFGWRVDTAPDGAAALETLR-GARYDIAFVDSAMPGLDG 947
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREA 115
+ +R+ + + + + + ER A
Sbjct: 948 LPLISAVRAAQVPAPRFCLLAPDPDTERYA 977
>gi|374581469|ref|ZP_09654563.1| PAS domain S-box [Desulfosporosinus youngiae DSM 17734]
gi|374417551|gb|EHQ89986.1| PAS domain S-box [Desulfosporosinus youngiae DSM 17734]
Length = 1157
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query: 18 NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
NP++ L+V+DD + + + LK G +VE A NGKEA+ LF+ G +D++ +D
Sbjct: 911 NPTS------VLLVEDDAINQKVIAKMLKEKGHRVETASNGKEALGLFKPGV-YDVILMD 963
Query: 78 KEMPVMNGIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+MP M+GIEA+++IR M G I I+ +T+ + +RE F+ G+D +KP+ + ++
Sbjct: 964 IQMPEMDGIEASKKIREMEDPGNYIPIIAMTAYALQGDRERFLALGMDGYVSKPIQMGEL 1023
Query: 135 LPLMEDL 141
++ L
Sbjct: 1024 FYTIDRL 1030
>gi|381158920|ref|ZP_09868153.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880278|gb|EIC22369.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 811
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVVDD+ + SM L LG +V+ A NG++A+D RS A FD+VF+D MP M+G
Sbjct: 687 LQVLVVDDEPTNTKVLSMMLNRLGHQVQTAANGRQALDRLRSQA-FDLVFMDASMPEMDG 745
Query: 86 IEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+EATR IR + + IV +T+ + +RE F+ AG+D +KP+
Sbjct: 746 LEATRHIRDNQDGDLDPSVPIVALTAHAMKGDRERFLAAGMDDYLSKPV 794
>gi|384262212|ref|YP_005417399.1| Sensor protein [Rhodospirillum photometricum DSM 122]
gi|378403313|emb|CCG08429.1| Sensor protein [Rhodospirillum photometricum DSM 122]
Length = 1049
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
S K ++ K LR+ LV +D R + L+ LG VE+A NG+EA+DL +
Sbjct: 757 SPDASPKAPDDAPPKPLRI--LVAEDIPENRILAQAVLERLGHDVELATNGREALDLLHT 814
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSM--------GIKIKIVGVTSLNSEA---EREAF 116
FD+V +D +MPVM+G++A R +R++ G ++ V V + ++A +RE F
Sbjct: 815 RGPFDVVLMDIQMPVMDGLDACRAVRALDPAVVFPDGRPVREVPVIAFTADALPGDRERF 874
Query: 117 MQAGLDLCHTKPLSVDKILPLMEDLMK 143
+ AG+D KPL++ ++ L+ ++ +
Sbjct: 875 LAAGMDETLPKPLNIRRLRTLLAEVAR 901
>gi|451947711|ref|YP_007468306.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451907059|gb|AGF78653.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 714
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIE 87
L+V+D+ + + SM L G+ VEVA NGK AVD+F S FD + +D +MP M+G E
Sbjct: 595 LLVEDNLVNQKLASMILTKAGYNVEVAANGKIAVDMFSSTPDLFDTILMDVQMPEMDGYE 654
Query: 88 ATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
ATR+IR +G I I+ +T+ + +RE ++AG++ TKP+ D + +++ +
Sbjct: 655 ATRQIRKLGYTSIPILAMTANAMKGDRELCLEAGMNDYITKPIKRDIVFNMLDKWL 710
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
+SS +AK ++ + R+ L+VDD+ I L + G K + + + +
Sbjct: 424 KSSISRAKTLKQLDLEGTRM--LIVDDNAANNEILVHLLNNAGIKTTALLDETQTMATLK 481
Query: 67 S----GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113
GA FD+ ID +MP + G E R IR +K + + + S E+
Sbjct: 482 EAEECGAPFDLAIIDLQMPTITGFELARIIRESNLKSRDIPFLAYTSSTEK 532
>gi|410464903|ref|ZP_11318289.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981982|gb|EKO38485.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 900
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E E+ KK E + L+V+DD R L+ +G+ V AENG+EA+D+
Sbjct: 749 EAEAPCKKVGQTETAAGH----VVLIVEDDPMNRMAAQRMLQKVGYTVHTAENGQEALDV 804
Query: 65 FRSG--AKFDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFM 117
+ DI+ +D +MPVM+G+EATR IR ++ I+ +T+ +RE F+
Sbjct: 805 LAAEHPRPVDIILMDIQMPVMDGLEATRRIRDNVDGLFDSQVPIIALTAYAMAGDRERFL 864
Query: 118 QAGLDLCHTKPLSVDKILPLME 139
+AGLD KP+ V ++L M+
Sbjct: 865 EAGLDDHLAKPVKVAEMLDSMK 886
>gi|110596967|ref|ZP_01385257.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A-like:Hpt [Chlorobium
ferrooxidans DSM 13031]
gi|110341654|gb|EAT60114.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A-like:Hpt [Chlorobium
ferrooxidans DSM 13031]
Length = 854
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ R I S L++ G+ +E A NG+EA+ L FD++ +D +MPVM+GIEA
Sbjct: 581 LLVDDNETSRRIMSALLENYGYHIEQAVNGREALSLLEK-EDFDLILMDVDMPVMDGIEA 639
Query: 89 TREIRS--------MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
T+ IRS G I I+ +T N E +AG++ KP+ DK++ +
Sbjct: 640 TKAIRSGKNFFRFRAGKTIPIIAITGNNDEQSSRILKEAGVNFHLCKPVFKDKLITTINV 699
Query: 141 LMKNN 145
L+KNN
Sbjct: 700 LLKNN 704
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV DDD R I S L L +++ AENG +AV + S ++D++FID EMP +NG A
Sbjct: 438 LVTDDDSSNRLIISKYLSELHCQIDQAENGLQAVAMV-SEKRYDLIFIDFEMPFLNGDRA 496
Query: 89 TREIR-------SMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+ IR S+ + + I+G+TSL E + G++ KP+SV ++
Sbjct: 497 VKLIRSAQNIDPSLALHYRDVPIIGITSLPKPEATERAEKNGMNEVLAKPVSVTTTRKII 556
Query: 139 E 139
E
Sbjct: 557 E 557
>gi|302413031|ref|XP_003004348.1| sensory/regulatory protein rpfC [Verticillium albo-atrum VaMs.102]
gi|261356924|gb|EEY19352.1| sensory/regulatory protein rpfC [Verticillium albo-atrum VaMs.102]
Length = 1121
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFID 77
K L L+VDD+ + + ++ + A NG EAV+L+ G FD+VF+D
Sbjct: 973 KQKSLHLLLVDDNPINIKLLTTVIRKMNHTFATASNGLEAVELYEKSLGEGRLFDLVFMD 1032
Query: 78 KEMPVMNGIEATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MPVMNG EATREIR + I+ KIV +T L+S ++R+ + +G D+ TKP+ +
Sbjct: 1033 ISMPVMNGFEATREIRRLEGRAGAIRCKIVVLTGLSSASDRKEAVASGSDMFLTKPVKLG 1092
Query: 133 KILPLME 139
K+ +++
Sbjct: 1093 KVREVLD 1099
>gi|262165686|ref|ZP_06033423.1| signal transduction histidine kinase [Vibrio mimicus VM223]
gi|262025402|gb|EEY44070.1| signal transduction histidine kinase [Vibrio mimicus VM223]
Length = 573
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
A + ++ AKN + LVV+D + + + L +G+ V +AENG EA++L FD
Sbjct: 441 AYLKQSTIAKNHHI--LVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKSNAFD 498
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+V +D MP+M+GI ATR+IRS I I I+ +T+ + ++++ + AG++ KP+
Sbjct: 499 LVLMDISMPIMDGIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRGK 558
Query: 133 KILPLMEDLMKNN 145
I+ ++ + NN
Sbjct: 559 DIMNVVNRFLPNN 571
>gi|402224481|gb|EJU04543.1| hypothetical protein DACRYDRAFT_113942 [Dacryopinax sp. DJM-731
SS1]
Length = 973
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-------RSGAKFDIVFIDK 78
L LVVDDD RT+ + L LG VE AE+G+EA+D+ R +FD++ +D
Sbjct: 833 LRVLVVDDDTLTRTLMTRMLSRLGCVVETAEDGQEALDVLLGSPEANRPPQRFDMISLDN 892
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
MPV++G EA R +R+ G +VG T + ++ +++ AG D TKP+ + + ++
Sbjct: 893 SMPVLSGEEAVRRLRAAGRTDLVVGCTGNALKTDQTSYLSAGADRVLTKPIMLKDLKAML 952
Query: 139 E 139
+
Sbjct: 953 Q 953
>gi|357116172|ref|XP_003559857.1| PREDICTED: two-component system protein A-like [Brachypodium
distachyon]
Length = 130
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS------GAKFDIVFIDK 78
R+ L+V+D+ R + L+ G V+ AENG EAV L R G +D++ D+
Sbjct: 5 RIRVLLVEDEEIHRVVARAVLRGAGADVDEAENGAEAVRLVRERIGGGGGGAYDLILTDR 64
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+MPVM+G EATR IR+MG+ IV V+S ++ AF AG D KPL+ +K+
Sbjct: 65 QMPVMDGHEATRRIRAMGVATPIVAVSSDCLPSDVHAFTAAGADDFTPKPLTKEKL 120
>gi|307721594|ref|YP_003892734.1| histidine kinase [Sulfurimonas autotrophica DSM 16294]
gi|306979687|gb|ADN09722.1| histidine kinase [Sulfurimonas autotrophica DSM 16294]
Length = 654
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALVV+D+ + + + L+ KV A NG EAV +++ K+DI+F+D +MP MNGI
Sbjct: 529 ALVVEDNLINQRLIKILLQEYNIKVSTASNGLEAVKMYKK-KKYDIIFMDIDMPYMNGIV 587
Query: 88 ATREIRSMGI---KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
AT+EI+ M + + IV +T++ E ++E ++ GLD +KPL+ +K+ +++ +K
Sbjct: 588 ATKEIKDMMLLKSQAPIVALTAMAMEGDKEMLLKEGLDDYISKPLTREKLEYILDKYLK 646
>gi|298528571|ref|ZP_07015975.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
gi|298512223|gb|EFI36125.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
Length = 533
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 8/111 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +DD + L G V +A+NG+EAV+L + + FD V +D +MPVM G+EA
Sbjct: 402 LVAEDDPMNQIFIKNLLTKEGHNVSMAKNGREAVELVQEHS-FDCVLMDIQMPVMTGVEA 460
Query: 89 TREIRSMG-------IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
TREIR++G ++I I+ VT+ +RE F+ AG+D KP+S++
Sbjct: 461 TREIRNLGGNGSIRNVQIPIIAVTAHTQPGDREKFLDAGMDDYLGKPVSLE 511
>gi|389684575|ref|ZP_10175903.1| sensor histidine kinase/response regulator [Pseudomonas
chlororaphis O6]
gi|388551798|gb|EIM15063.1| sensor histidine kinase/response regulator [Pseudomonas
chlororaphis O6]
Length = 942
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ + K L L LV +D+ + I L+ LG VE+A NG+EA+ ++ +FD+V
Sbjct: 811 EHWTLKQLDLKVLVAEDNVINQLILRDQLEELGCSVELASNGEEALSMWNP-ERFDLVLT 869
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D MPVMNG E +E+R G + I+G T+ E E + AG++ C KP ++
Sbjct: 870 DVNMPVMNGYELAKELRRRGCTVPIIGATANAMRGEEEQCLAAGMNHCLVKPFAL 924
>gi|304310368|ref|YP_003809966.1| response regulator receiver [gamma proteobacterium HdN1]
gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
Length = 1044
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
M+ G E+ I +K L LVVDD+ R + L+ LG++ + AENG+E
Sbjct: 898 MLAGRRETEKTAQLIASQTPSKRL----LVVDDNEVNRKVACGFLRKLGYEADTAENGQE 953
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQ 118
A+D + ++ +D +MPVM+G EATR+I+++ G + I+ VT+ E +R+ +
Sbjct: 954 ALDAVLE-KDYGLILMDCQMPVMDGYEATRQIKALPKGKYLPIIAVTANAMEGDRDKCLA 1012
Query: 119 AGLDLCHTKPLSVDKILPLM 138
AG+D TKP+ +K+ L+
Sbjct: 1013 AGMDDYTTKPIRREKLQELL 1032
>gi|449304840|gb|EMD00847.1| hypothetical protein BAUCODRAFT_100388 [Baudoinia compniacensis
UAMH 10762]
Length = 655
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 5 EGESSSKKAKIMENPSAK------NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENG 58
E E SK A E+P+ N R L+V+D+ + I + L++ GF V A+NG
Sbjct: 497 ESEKQSKAASPKESPNGHRVEPTANGRTRVLLVEDNVINQRIVNRKLQAKGFSVTTADNG 556
Query: 59 KEAVDLFRSGAK--------FDIVFIDKEMPVMNGIEATREIRSMGIK-----IKIVGVT 105
+ AVDL R G + FD++ +D+EMPVM+G AT+ IR M K + I+GVT
Sbjct: 557 QVAVDLVRQGPRTSGGDDGLFDVILMDQEMPVMDGNAATKAIREMQNKGEIERLPILGVT 616
Query: 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+ A+++ + +G+D +KP ++ ++ + ++
Sbjct: 617 ANVRGAQQDEMISSGMDDVISKPYKIEDMVAKINKIL 653
>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
fructosovorans JJ]
gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
fructosovorans JJ]
Length = 668
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
G + KK+ + + P+ LR+ L+ +D+ R AL LG +VE A +G+EA+
Sbjct: 525 GRKRDAGKKSVVPKIPAGAGLRI--LLAEDEPVNRIFTVRALTKLGHQVETAVDGREALA 582
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQ 118
L A FD+V +D +MP +NG++ATR IRS + I +V +T+ +++RE ++
Sbjct: 583 LL-GRAPFDLVLMDIQMPRLNGLDATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLE 641
Query: 119 AGLDLCHTKPLSVDKILPLMEDLMK 143
AG+D TKP +++ ME ++
Sbjct: 642 AGMDEYVTKPFEPQELVAAMERALR 666
>gi|340522390|gb|EGR52623.1| histidine kinase [Trichoderma reesei QM6a]
Length = 730
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 5 EGESS---SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKE 60
E E S ++K ++M+ R L +D+ + + + LKSLGF +A NG E
Sbjct: 574 ESEKSRQDAEKERMMQRIKELAPRKRILAAEDNLVNQKVLARVLKSLGFHNTTIAANGAE 633
Query: 61 AVDLFRSGAK-FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119
AV ++ +D+V +D MPVM+G EATR+IR+ GI I I+ +T+ + E ++
Sbjct: 634 AVSTLKASPNTYDLVLMDISMPVMDGFEATRKIRTQGIPIPIIAMTAYALRGDSETCLEK 693
Query: 120 GLDLCHTKPLSVDKIL 135
G+D +KP++++K+L
Sbjct: 694 GMDDYISKPVNINKLL 709
>gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 778
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
+ L+V+DD + L+ G V +AENG+EA+DL R+G FDIV +D +MPVM G
Sbjct: 648 MHVLMVEDDPSNQVATRKLLEKSGHAVTLAENGQEALDLLRTG-DFDIVLMDIQMPVMGG 706
Query: 86 IEATREIR-SMGI----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
EAT+EIR S G+ I ++ +T+ +RE F+ +G+D KP+S++ + ++E
Sbjct: 707 QEATKEIRNSPGLAACKSIPVIALTAYAMTGDREKFLASGMDDYLVKPVSLENLQRMIE 765
>gi|239908139|ref|YP_002954880.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798005|dbj|BAH76994.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 807
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+V+D+ + + L+SLG V+VA NG+EAV++ RS + +D+V +D +MPVM+G+
Sbjct: 314 LVLLVEDNAINQQVARETLESLGAAVDVAINGREAVEMVRS-SLYDVVLMDVQMPVMDGL 372
Query: 87 EATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
ATR IR + ++ IV +T+ +RE ++AG++ TKPL VD++L
Sbjct: 373 AATRAIRQLPGTAELPIVALTAHALAEDRERCLEAGMNDYLTKPLEVDRLL 423
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV-DLF---RSGAKFDIVFIDKEMPVMN 84
L+VDD R I S L+S G +V AENGK+A LF G FD++ +D EMP M+
Sbjct: 588 LLVDDAKLNRAIFSQILRSGGHEVVTAENGKDACRRLFGQKPDGRPFDLILMDIEMPEMD 647
Query: 85 GIEATREIRSM---------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G A R IR + + IV +TS + + E ++AG+D C K ++L
Sbjct: 648 GPTAARTIRRLLAASVAPPCAPGVPIVALTSHDCKDEAARCLEAGMDACLHKVFEQGELL 707
Query: 136 PLMEDLM 142
+++ LM
Sbjct: 708 AILQGLM 714
>gi|365873174|ref|ZP_09412707.1| PAS domain S-box [Thermanaerovibrio velox DSM 12556]
gi|363983261|gb|EHM09468.1| PAS domain S-box [Thermanaerovibrio velox DSM 12556]
Length = 888
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + + + L+ +G V A +GKEA+ +F FD+V +D +MPVM+G+E
Sbjct: 646 LLAEDNWANQRLMTTVLRRMGLDVLCASDGKEALGIFEQEGPFDMVLMDVQMPVMDGLEV 705
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TR IR M G + IVG+T+ +S +R+A ++AG+D KP+S ++
Sbjct: 706 TRRIRGMEKGSGRRTLIVGLTAFSSPEDRKACVEAGMDRFLAKPVSPSRL 755
>gi|398879116|ref|ZP_10634218.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
gi|398197477|gb|EJM84456.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
Length = 940
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
K L L LV +D+ R I L+ LG E+A NG+EA+ ++R G +FD++ D MP
Sbjct: 814 KKLHLHILVAEDNVINRLILHDQLQELGCTAELAGNGEEALTMWRRG-RFDMILSDVNMP 872
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
NG E RE+R MG + I+G T+ E + AG++ C KP ++ +
Sbjct: 873 RKNGYELARELRRMGCNVPIIGATANAMRGEEALCLAAGMNHCLVKPFTLQAL 925
>gi|379722572|ref|YP_005314703.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
3016]
gi|386725338|ref|YP_006191664.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
K02]
gi|378571244|gb|AFC31554.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
3016]
gi|384092463|gb|AFH63899.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
K02]
Length = 639
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R+ L+ +D+ + ++ LG+ V V NG EAVD + A +D++F+D +MP+MN
Sbjct: 514 RIRILIAEDNDINTLVLKRVIEKLGYSVTVVSNGAEAVDAAKRHA-YDLIFMDVQMPLMN 572
Query: 85 GIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
G+EAT+ I++M G IV VT+ + +RE ++ AG+D +KP+S+D + ++E
Sbjct: 573 GLEATKAIKAMSAEGSCPYIVAVTAHAIKGDREKYLAAGMDEYISKPISMDAVSGIIEQF 632
Query: 142 M 142
+
Sbjct: 633 L 633
>gi|303287424|ref|XP_003063001.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455637|gb|EEH52940.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + +K G ++A NGKEAVD+ R GA++D + +D +MPVM+G++A
Sbjct: 1 LIVEDNVMNQKVARVVVKHCGMSSDLANNGKEAVDILRGGARYDAILMDVQMPVMDGLDA 60
Query: 89 TREIRSMGIKIKI-----VGVTSLNSEAE--REAFMQAGLDLCHTKPLSVDKILPLM 138
TR+IR M ++ + TS N+ AE +E F AG+D TKP+ K+ L+
Sbjct: 61 TRKIREMEASGELPERNFILATSANATAENHQEGF-AAGMDEYITKPIYPTKLKELL 116
>gi|410465886|ref|ZP_11319059.1| signal transduction histidine kinase [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981092|gb|EKO37713.1| signal transduction histidine kinase [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 807
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+V+D+ + + L++LG V+VA NG+EAV++ RS + +D+V +D +MPVM+G+
Sbjct: 314 LVLLVEDNAINQQVARETLETLGAAVDVAINGREAVEMVRS-SLYDVVLMDVQMPVMDGL 372
Query: 87 EATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
ATR IR + ++ IV +T+ +RE ++AG++ TKPL VD++L
Sbjct: 373 AATRAIRQLSSTAELPIVALTAHALAEDRERCLEAGMNDYLTKPLEVDRLL 423
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV-DLF---RSGAKFDIVFIDKEMPVMN 84
L+VDD R I S L+S G +V AENGKEA LF G FD++ +D EMP M+
Sbjct: 588 LLVDDAKLNRAIFSQILRSGGHEVVTAENGKEACRRLFGEKPDGRPFDLILMDIEMPEMD 647
Query: 85 GIEATREIRSM---------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G A R IR + + IV +TS + + E+ AG+D C K ++L
Sbjct: 648 GPTAARTIRRLLGASVSPPCAPGVPIVALTSHDCKNEQARCQDAGMDACLHKVFEQGELL 707
Query: 136 PLMEDLM 142
+++ LM
Sbjct: 708 AILQGLM 714
>gi|346306547|ref|ZP_08848702.1| hypothetical protein HMPREF9457_00411 [Dorea formicigenerans
4_6_53AFAA]
gi|345908250|gb|EGX77907.1| hypothetical protein HMPREF9457_00411 [Dorea formicigenerans
4_6_53AFAA]
Length = 995
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 10/137 (7%)
Query: 17 ENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS--GAK 70
+ AKN + +A L+V+D+ R I + +K +G +V+ AE+G +AV++ S G K
Sbjct: 858 QKDQAKNRKSYAGKKVLLVEDNELNREIATAIMKEIGLEVDTAEDGTDAVNIMSSAEGRK 917
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+D++F+D +MP M+G ATREIR++ I I+ +T+ E +R+ ++AG++
Sbjct: 918 YDLIFMDIQMPKMDGYTATREIRTLNNHKCANIPIIAMTANAFEEDRKKAVKAGMNGHIA 977
Query: 127 KPLSVDKILPLMEDLMK 143
KP+S D IL ++ + +
Sbjct: 978 KPISADVILENLDQIFE 994
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV-- 62
E E+S + K P K R ALVVDDD S L+ + + +GKEAV
Sbjct: 708 ECETSGETVKREPVPELKGAR--ALVVDDDAQTCMSVSRMLREIEMTADWTTSGKEAVLR 765
Query: 63 --DLFRSGAKFDIVFIDKEMPVMNGIEATREIR-SMGIKIKIVGVTSLN-SEAEREAFMQ 118
+ + +F + ID MP MNGIE R IR +G + I+ +T+ + S+ E+EA +
Sbjct: 766 AKEAYEQNQEFKVYIIDWLMPDMNGIETVRRIRMVVGKEYPIIILTAYDWSDVEQEA-RE 824
Query: 119 AGLDLCHTKPLSVDKILPLM-----EDLMKN 144
AG+ +KPL + ++ ++ +L+KN
Sbjct: 825 AGVTAFVSKPLFLSELREVLMSQAQRELLKN 855
>gi|399008938|ref|ZP_10711389.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
gi|398114449|gb|EJM04270.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
Length = 940
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ + K L L LV +D+ + I L+ LG VE+A NG+EA+ ++ +FD+V
Sbjct: 809 EHWTLKQLNLNVLVAEDNVINQLILRDQLEELGCSVELASNGEEALSIWNP-ERFDLVLT 867
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D MP+MNG E +E+R G + I+G T+ E E + AG++ C KP ++
Sbjct: 868 DVNMPMMNGYELAKELRRRGCTVPIIGATANAMRGEEEQCLAAGMNHCLVKPFAL 922
>gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium
carboxidivorans P7]
gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium
carboxidivorans P7]
Length = 779
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 5/124 (4%)
Query: 18 NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
N +NL + L+V+DD + + LK G+ V++A NG EA+ ++ + K+DI+ +D
Sbjct: 536 NKVTENLNI--LLVEDDKLNQQVIGRMLKERGYLVDIAGNGLEAIKMYEN-KKYDIILMD 592
Query: 78 KEMPVMNGIEATREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+MPVMNGIE T+ IR I+ I I+ +T+ + ++E F+ G+D KP+ +DK+
Sbjct: 593 IQMPVMNGIETTKIIREKEIENHIPIIAITAYALKGDKEKFLSKGMDDYIPKPVKMDKLF 652
Query: 136 PLME 139
++E
Sbjct: 653 NVIE 656
>gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
kujiense DSM 16994]
gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
kujiense DSM 16994]
Length = 1088
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV +D+ + + L+ LG ++ +A NG EA + ++G+ FDI+F+D +MPV++GIE
Sbjct: 787 ALVAEDNIINQKLIRRTLEDLGLEITIANNGLEAFEKRKNGS-FDIIFMDIQMPVLDGIE 845
Query: 88 ATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
AT+EI I I+ +T+ + +RE FM AG+D TKPL +I+ L+ + +
Sbjct: 846 ATQEILDFEEDYGQNHIPIIALTANALKGDRERFMSAGMDEYTTKPLVRSEIISLLNNFL 905
Query: 143 KN 144
+
Sbjct: 906 SH 907
>gi|224072598|ref|XP_002303799.1| predicted protein [Populus trichocarpa]
gi|222841231|gb|EEE78778.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 9/110 (8%)
Query: 29 LVVDDDCFIRTI---HSMAL---KSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
L+V DD R I + M + K + + A NGKEAV L +GA FD++ +D +MP+
Sbjct: 325 LIVHDDRDARDIIWRYVMVVGTEKHFTLEFQEARNGKEAVYLHLAGASFDLIIMDDQMPI 384
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M GI+AT+ +R MG+K +I+G SE+ ++AF+ AG D C PL +
Sbjct: 385 MTGIQATQLLRKMGVKSQIIGFA---SESVQQAFIDAGADECLQMPLDTE 431
>gi|425899726|ref|ZP_18876317.1| sensor histidine kinase/response regulator [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397889329|gb|EJL05811.1| sensor histidine kinase/response regulator [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 940
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ + K L L LV +D+ + I L+ LG VE+A NG+EA+ ++ +FD+V
Sbjct: 809 EHWTLKQLNLNVLVAEDNVINQLILRDQLEELGCSVELASNGEEALSMWDP-ERFDLVLT 867
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D MP+MNG E +E+R G + I+G T+ E E + AG++ C KP ++
Sbjct: 868 DVNMPMMNGYELAKELRRRGCTVPIIGATANAMRGEEEQCLAAGMNHCLVKPFAL 922
>gi|84516567|ref|ZP_01003926.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53]
gi|84509603|gb|EAQ06061.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53]
Length = 720
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
+LG + +A ++ +++R+ L+V+D+ R + + L+S G +V A +G A
Sbjct: 443 VLGPAAPVAVRAIPVQPDVPRDIRV--LLVEDNAINREVAAALLQSFGARVVTANDGSIA 500
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121
+DL + A FDIV +D +MPVM+G+ ATR IR++GI + I+G+T+ +R+ + AG+
Sbjct: 501 LDLVQLAA-FDIVLMDLQMPVMDGLAATRAIRALGIDLPIIGLTANAYAEDRQRCLDAGM 559
Query: 122 DLCHTKPLSVDKILPLMEDLM 142
KP++ DK+ ++ M
Sbjct: 560 TDFVAKPVTRDKLGSMLRGCM 580
>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 806
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 74/119 (62%), Gaps = 6/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+DD R L+ G V+ A+NG +AV+ F + + FD +F+D MPVM+G++A
Sbjct: 688 LLVEDDPANRFAMQKLLQKSGHHVQTAQNGSQAVEAF-AHSHFDCIFMDIHMPVMDGVQA 746
Query: 89 TREIRSM---GI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TR+IRSM GI K+ I+ +T+ +RE F+++G+D KP+ + I +++ L+
Sbjct: 747 TRKIRSMQDSGIAPKVPIIALTAYTLNGDREKFLESGMDEYLGKPVQMQDIENVLKKLL 805
>gi|323446885|gb|EGB02893.1| hypothetical protein AURANDRAFT_34765 [Aureococcus anophagefferens]
gi|323452096|gb|EGB07971.1| hypothetical protein AURANDRAFT_26825 [Aureococcus anophagefferens]
Length = 427
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 17/123 (13%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-----RSGAK----------FD 72
ALVVDD R + + ++ LGF+VE+AE+G EAV R+G FD
Sbjct: 295 ALVVDDVSSNRKLIAFHVRKLGFEVELAEDGAEAVAAHSRKRARTGGGAAPQDAADDGFD 354
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAER-EAFMQAGLDLCHTKPLSV 131
++ +D MPVMNG++ATR IR+ G IVGVT N+ AE AF+ AG + TKP+SV
Sbjct: 355 LILMDSVMPVMNGLDATRAIRAAGCDALIVGVTG-NALAEDIAAFVAAGANCVVTKPVSV 413
Query: 132 DKI 134
++
Sbjct: 414 AQL 416
>gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas protegens
Pf-5]
gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas protegens
Pf-5]
Length = 945
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
K L L LV +D+ + I L+ LG VE+A NG+EA+ ++++G +F++V D MP
Sbjct: 819 KKLSLHVLVAEDNVINQLILKDQLEELGCSVELASNGEEALCIWKAG-RFNVVLTDVNMP 877
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
+NG E +E+R G I I+G T+ E E + AG++ C KP ++
Sbjct: 878 KLNGYELAQELRRQGCSIPIIGATANAMRGEEELCLAAGMNHCLVKPFAL 927
>gi|428213852|ref|YP_007086996.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002233|gb|AFY83076.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1828
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 5 EGESSSKKAK---IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
EGE +++ K + P A+ LVVDD R + LKSLGF+V+ AENG+ A
Sbjct: 1593 EGEVQTRQTKRRAVAIAPQAQANESRILVVDDAFESRLLLKTILKSLGFQVQEAENGQGA 1652
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKIVGVTSLNSEAEREAFMQA 119
+ +++S K ++ +D +MPVM+G EATR I+S G K IV +T+ E ER+ + A
Sbjct: 1653 IAVYQSW-KPHLILMDMQMPVMDGYEATRHIKSTAQGQKTTIVALTASAFEEERKMILDA 1711
Query: 120 GLDLCHTKPL 129
G D KP
Sbjct: 1712 GCDDFIRKPF 1721
>gi|392565311|gb|EIW58488.1| hypothetical protein TRAVEDRAFT_124042 [Trametes versicolor FP-101664
SS1]
Length = 1051
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 29/134 (21%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA--------------- 69
+L LVVDDD R + S L +G KV AENG+ A+DL G
Sbjct: 886 KLNVLVVDDDLLTRKLMSRMLTRIGCKVTTAENGEVALDLILHGHAQRETPSSEDTGCGG 945
Query: 70 --------------KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREA 115
++ +VF+D +MPVM+G+EA ++R MG + +VGVT A+++
Sbjct: 946 LSIDGVASGSADEYRYQVVFLDNQMPVMSGLEAVSKLRQMGRRDFVVGVTGNALLADQQE 1005
Query: 116 FMQAGLDLCHTKPL 129
+++AG+D TKP+
Sbjct: 1006 YLEAGVDHVLTKPV 1019
>gi|116208764|ref|XP_001230191.1| hypothetical protein CHGG_03675 [Chaetomium globosum CBS 148.51]
gi|88184272|gb|EAQ91740.1| hypothetical protein CHGG_03675 [Chaetomium globosum CBS 148.51]
Length = 1193
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 10/123 (8%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-----SGAKFDIVFIDKEMPVM 83
L+VDD+ + + ++ L A NG EAV L++ +FD++F+D MPVM
Sbjct: 1065 LLVDDNPINLKLLTQLVRKLKHTFATANNGLEAVQLYKKSLEGQANRFDLIFMDISMPVM 1124
Query: 84 NGIEATREIRSMGIKI-----KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
NG EATREIR + + + KIV +T L S+ +GLDL TKP+ ++ I L+
Sbjct: 1125 NGFEATREIRQLELAVGVGRCKIVALTGLRSDVNGAEATASGLDLFLTKPVKLNTIRQLL 1184
Query: 139 EDL 141
+++
Sbjct: 1185 DEI 1187
>gi|406934887|gb|EKD69023.1| sensory box sensor histidine kinase/response regulator [uncultured
bacterium]
Length = 601
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+DD + + L +G+K++ A NG+EAV+L+ G +FD V +D +MP M+G EA
Sbjct: 481 LLVEDDFINQKFMKVLLTRIGWKIQTANNGREAVNLYEPG-RFDAVIMDGQMPEMSGFEA 539
Query: 89 TREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
T IR + ++ I+ +T+ + +R+ F+ AG+D +KP+ +KIL
Sbjct: 540 TTAIREIEKTRGAGRVPIIALTAYAMKGDRDKFISAGMDDYISKPVQNEKIL 591
>gi|346972494|gb|EGY15946.1| autoinducer 2 sensor kinase/phosphatase luxQ [Verticillium dahliae
VdLs.17]
Length = 1181
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 9/123 (7%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFIDKEMP 81
L L+VDD+ + + ++ + A NG EAV+L+ G FD+VF+D MP
Sbjct: 1037 LHLLLVDDNPINIKLLTTVVRKMNHTFSTASNGLEAVELYEKSLVEGRPFDLVFMDISMP 1096
Query: 82 VMNGIEATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
VMNG EATREIR + + KIV +T L+S ++R+ + +G D+ TKP+ + K+
Sbjct: 1097 VMNGFEATREIRRLEGRAGAARCKIVVLTGLSSASDRKEAVASGSDMFLTKPVKLGKVRE 1156
Query: 137 LME 139
+++
Sbjct: 1157 VLD 1159
>gi|441505531|ref|ZP_20987514.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
gi|441426764|gb|ELR64243.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
Length = 815
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + M L+ LG +VE+A NG EA+ FR + FD++F+D +MPVM+G A
Sbjct: 684 LVVEDTAVNQKVAKMMLEKLGVRVEIANNGAEAISRFREQS-FDVIFMDCQMPVMDGFAA 742
Query: 89 TREIR---SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
T+ IR + G +I I+ +T+ + E+E AG+D +KP+S K+L +M
Sbjct: 743 TKAIRTEETEGHRIPIIALTANVVKEEKEKCFAAGMDDFVSKPVS-QKMLAVM 794
>gi|389875458|ref|YP_006373193.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530413|gb|AFK55609.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1592
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S L+ G++V V ENG EA++ R+ FD+VF+D +MPVM+G+EA
Sbjct: 1319 LLVEDNTVNQAVASTILEKQGYRVAVVENGAEAIEACRAD-DFDLVFMDVQMPVMDGMEA 1377
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
TR IR+ + IV +T+ RE +M AG+D KP +K+L +
Sbjct: 1378 TRRIRTAEAESGRPRTPIVAMTANAMAGMREEYMAAGMDDFVPKPFRAEKLLAM 1431
>gi|255085834|ref|XP_002505348.1| predicted protein [Micromonas sp. RCC299]
gi|226520617|gb|ACO66606.1| predicted protein [Micromonas sp. RCC299]
Length = 114
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDDD +R + + L+ + A +G EAVD SG +FD+V +D MPVM+G+EA
Sbjct: 3 LLVDDDRLVRMVLAALLRRMDAICVTASDGAEAVDKCASG-EFDLVIMDLRMPVMDGLEA 61
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
TR IR M + IVG+T+ + FM++G + KP+S D + L+
Sbjct: 62 TRRIREMDADVPIVGLTANTMPEDTARFMRSGANEVIYKPISADNVEKLL 111
>gi|421610035|ref|ZP_16051219.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
gi|408499093|gb|EKK03568.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
Length = 1637
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKEMPVMN 84
L+ DD +R + LK G +VEVAENG++AVD+ R G F++ +D +MP ++
Sbjct: 1518 LIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAASRDGKPFELCLMDMQMPELD 1577
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
G+ A RE+R GI++ ++ +T+ + R + G D +KPL V+++L + + L+
Sbjct: 1578 GLGAVRELRQRGIELPVIALTADAMKGTRRRLISEGFDEYLSKPLKVNRLLRIAKGLL 1635
>gi|357167247|ref|XP_003581071.1| PREDICTED: hybrid signal transduction histidine kinase A-like
[Brachypodium distachyon]
Length = 142
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV++D F + L+ + A+NG+EAVDL+ G KFDI+ DKEMP+M G
Sbjct: 15 LKVLVIEDCEFQSWVLLAKLRRFSCQTTRAKNGREAVDLYLEGKKFDIILCDKEMPIMKG 74
Query: 86 IEATREIRSMG-----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
EA +IRSMG ++KIVG+++ +S A E FM G D+ KP+ + + ++++
Sbjct: 75 PEAIVKIRSMGSTMGSTEVKIVGMSA-DSNATEE-FMSVGADMFVPKPMDFEVLEAIIKE 132
Query: 141 LM--KNN 145
++ KNN
Sbjct: 133 VINKKNN 139
>gi|449138117|ref|ZP_21773413.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448883278|gb|EMB13815.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1637
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 22 KNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDIVF 75
+N++L A L+ DD +R + LK G +VEVAENG++AVD+ + AK F++
Sbjct: 1509 QNIQLNARVLIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAAAKDGKPFELCL 1568
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+D +MP ++G+ A RE+R GI++ ++ +T+ + R + G D +KPL V+++L
Sbjct: 1569 MDMQMPELDGLGAVRELRERGIELPVIALTADAMKGTRRRLISEGFDEYLSKPLKVNRLL 1628
Query: 136 PLMEDLM 142
+ + L+
Sbjct: 1629 RIAKGLL 1635
>gi|357129551|ref|XP_003566425.1| PREDICTED: LOW QUALITY PROTEIN: hybrid signal transduction
histidine kinase A-like [Brachypodium distachyon]
Length = 133
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 5/123 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV++D I L+ + AENGKEAVDL+ G FDI+ DK+MP+MNG
Sbjct: 10 LKVLVIEDSELQSMILLAMLRRCNCETARAENGKEAVDLYLEGKTFDIILCDKQMPIMNG 69
Query: 86 IEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM-- 142
EA +IRSMG ++KIVG+ S +S+A E F+ G D+ KP+ ++ ++ +++
Sbjct: 70 PEAIVKIRSMGATEVKIVGL-SADSDATEE-FISDGADMFVAKPMKLEVSXDIVREVIRK 127
Query: 143 KNN 145
KNN
Sbjct: 128 KNN 130
>gi|417305855|ref|ZP_12092797.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
Length = 1637
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKEMPVMN 84
L+ DD +R + LK G +VEVAENG++AVD+ R G F++ +D +MP ++
Sbjct: 1518 LIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAASRDGKPFELCLMDMQMPELD 1577
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
G+ A RE+R GI++ ++ +T+ + R + G D +KPL V+++L + + L+
Sbjct: 1578 GLGAVRELRQRGIELPVIALTADAMKGTRRRLISEGFDEYLSKPLKVNRLLRIAKGLL 1635
>gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
27755]
gi|166029202|gb|EDR47959.1| response regulator receiver domain protein [Dorea formicigenerans
ATCC 27755]
Length = 995
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 83/137 (60%), Gaps = 10/137 (7%)
Query: 17 ENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS--GAK 70
+ A+N + +A L+V+D+ R I + +K +G +V+ AE+G +AV++ S G K
Sbjct: 858 QKAQAENRKSYAGKKVLLVEDNELNREIATAIMKEIGLEVDTAEDGTDAVNIMSSAEGRK 917
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+D++F+D +MP M+G ATREIR++ I I+ +T+ E +R+ ++AG++
Sbjct: 918 YDLIFMDIQMPKMDGYTATREIRTLNNHKCANIPIIAMTANAFEEDRKKAVKAGMNGHIA 977
Query: 127 KPLSVDKILPLMEDLMK 143
KP+S D IL ++ + +
Sbjct: 978 KPISADVILENLDQIFE 994
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV-- 62
E E+S + K P K R ALVVDDD S L+ + + +GKEAV
Sbjct: 708 ECETSGETVKREPVPELKGAR--ALVVDDDAQTCMSVSRMLREIEMTADWTTSGKEAVLR 765
Query: 63 --DLFRSGAKFDIVFIDKEMPVMNGIEATREIR-SMGIKIKIVGVTSLN-SEAEREAFMQ 118
+ + +F + ID MP MNGIE R IR +G + I+ +T+ + S+ E+EA +
Sbjct: 766 AKEAYEQNQEFKVYIIDWLMPDMNGIETVRRIRMVVGEEYPIIILTAYDWSDVEQEA-RE 824
Query: 119 AGLDLCHTKPLSVDKILPLM-----EDLMKN 144
AG+ +KPL + ++ ++ +L+KN
Sbjct: 825 AGVTAFVSKPLFLSELREVLMSQAQRELLKN 855
>gi|117926505|ref|YP_867122.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610261|gb|ABK45716.1| amino acid-binding domain sensor hybrid histidine kinase
[Magnetococcus marinus MC-1]
Length = 1251
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Query: 5 EGESSSKKAKIMENPSAKNLRLF----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
EG + + + + SA LR L+V+D+ + + L+ G +V VAENG
Sbjct: 924 EGIETQEGGGLNDGVSAARLRRIQGARVLLVEDNALNQQVAVAFLEQAGMEVAVAENGLR 983
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREI--RSMGIKIKIVGVTSLNSEAEREAFMQ 118
+++ + +D+VF+D +MPVM+G+EATR++ RS K+ I+ +T+ +ERE M
Sbjct: 984 CIEMAEQ-SHYDLVFMDIQMPVMDGLEATRQLRQRSALAKLPIIAMTAQAMPSERECSMV 1042
Query: 119 AGLDLCHTKPLSVDKILPLM 138
AGLD TKP+S + I ++
Sbjct: 1043 AGLDDYLTKPVSPEAIQQML 1062
>gi|386393413|ref|ZP_10078194.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385734291|gb|EIG54489.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1340
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+V+D+ R L+S G +V +AENG+ A+D F + + D+V +D +MPVM+
Sbjct: 1087 RLRILLVEDNRVNRVFAGDLLESRGHEVAMAENGRAALD-FLARERVDVVLMDIQMPVMD 1145
Query: 85 GIEATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
G+ ATR IR+ + + +VG+++ + ERE F+ AGLD TKP+ V+ ++
Sbjct: 1146 GLAATRAIRAGEDGIDPALPVVGLSAYAMDQERERFLAAGLDGYITKPIDVEAFFEVVRA 1205
Query: 141 LM 142
++
Sbjct: 1206 VL 1207
>gi|357633576|ref|ZP_09131454.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
gi|357582130|gb|EHJ47463.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
Length = 1821
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 6 GESSSKKAKIMENP-SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
G + ++ A+ P S RL L V+DD + L+ LG V A++G+EAVD
Sbjct: 1665 GGAPARPAEAGNRPRSQARERLRILFVEDDAVNQMTGKRMLEKLGHAVVAADDGREAVDC 1724
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-----IKIKIVGVTSLNSEAEREAFMQA 119
F +FD++F+D +MP M+G+EATR IR+ G + I+ +T+ ++RE F+ A
Sbjct: 1725 FLR-QEFDLIFMDIQMPRMDGVEATRAIRNAGAPGRRTDLPIIALTAYAMTSDREKFLAA 1783
Query: 120 GLDLCHTKPLSV 131
GLD KP+ +
Sbjct: 1784 GLDDYVAKPVEL 1795
>gi|357635433|ref|ZP_09133311.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357583987|gb|EHJ49320.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 1340
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+V+D+ R L+S G +V +AENG+ A+D F + + D+V +D +MPVM+
Sbjct: 1087 RLRILLVEDNRVNRVFAGDLLESRGHEVAMAENGRAALD-FLARERVDVVLMDIQMPVMD 1145
Query: 85 GIEATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
G+ ATR IR+ + + +VG+++ + ERE F+ AGLD TKP+ V+
Sbjct: 1146 GLAATRAIRAGEGGIDPTLPVVGLSAYAMDQERERFLAAGLDGYITKPIDVE 1197
>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 1637
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKEMPVMN 84
L+ DD +R + LK G +VEVAENG++AVD+ R G F++ +D +MP ++
Sbjct: 1518 LIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAASRDGKPFELCLMDMQMPELD 1577
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
G+ A RE+R GI++ ++ +T+ + R + G D +KPL V+++L + + L+
Sbjct: 1578 GLGAVRELRQRGIELPVIALTADAMKGTRRRLITEGFDEYLSKPLKVNRLLRIAKGLL 1635
>gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 878
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
R+ L +D+ F R + L +L +++ ENG++AVD +G FDIV +D +MP+M
Sbjct: 759 RVRVLAAEDNPFNRGLLVKMLNTLNVSDIQMVENGQDAVDALAAGQAFDIVLMDIQMPLM 818
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+G+EATR+IR+MG+ + I+ +T+ E+++ ++AG++ KP + ++
Sbjct: 819 DGLEATRQIRAMGLNVPIIALTAHALESDQRKSLEAGMNGHLAKPYRLQDLV 870
>gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
gi|385790567|ref|YP_005821690.1| sensory box histidine kinase/response regulator [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 1260
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG--AKFDIVFIDKEMPVMNGI 86
L+V+D+ R I L+ GF+V AENG+EAV+L R ++DIV +D +MPVM+G
Sbjct: 1139 LLVEDNEMNRQIACDLLEDNGFEVFTAENGEEAVELVRQSVPGQYDIVLMDVQMPVMDGY 1198
Query: 87 EATREIRSMGI----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
ATR IR + +I I+ +T+ E +R+A + AG+D +KP++ DK+ ++ +
Sbjct: 1199 AATRAIRVLPAGYQSRIPIIAMTANAFEEDRKAALDAGMDEHISKPINFDKMKYILSRFL 1258
Query: 143 K 143
K
Sbjct: 1259 K 1259
>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 1258
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
G+ E ++ ++ ++ A L L+ +D+ F + + + L G +VEVAENGK AVD
Sbjct: 983 GDPEEAAAGREVSDDALASLRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVD 1042
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLD 122
+ + A +D+V +D +MPVM+G+ ATREIR +G + ++ +T+ +A+R+ AG++
Sbjct: 1043 MVMA-APYDMVLMDMQMPVMDGVAATREIRRLGFGDLPVIAMTANAMQADRDRCAAAGMN 1101
Query: 123 LCHTKPLSVDKIL 135
TKP+ D++
Sbjct: 1102 DYLTKPIDPDELF 1114
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR--SGAK-FDIVFIDKEMPVMNG 85
LVVDD+ R + L S+ F+VE E+G AV R +GAK F++VF+D +MP M+G
Sbjct: 859 LVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAGAKPFEVVFLDWQMPGMDG 918
Query: 86 IEATREIRSMGIKI--KIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
IE R I +G+ ++ VT+ E +A AG++ KP++
Sbjct: 919 IETARAILGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDVLIKPVN 965
>gi|386393709|ref|ZP_10078490.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385734587|gb|EIG54785.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1944
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 6 GESSSKKAKIMENP-SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
G ++ A+ + P S RL L V+DD + L+ LG V A +G+EAVD
Sbjct: 1788 GGPPARTAEAGDRPRSQARERLRILFVEDDAVNQMTGKRMLEKLGHAVVAAGDGREAVDC 1847
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-----IKIKIVGVTSLNSEAEREAFMQA 119
F A FD++F+D +MP M+G+EATR IR G + I+ +T+ ++RE F+ A
Sbjct: 1848 FLRQA-FDLIFMDIQMPRMDGVEATRAIRGAGAPGRRTDLPIIALTAYAMTSDREKFLAA 1906
Query: 120 GLDLCHTKPLSV 131
GLD KP+ +
Sbjct: 1907 GLDDYVAKPIEL 1918
>gi|436841522|ref|YP_007325900.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170428|emb|CCO23799.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 1045
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113
+ ENGK AVD F FDI+F+D +MPVM+G EATR IR + ++IV +T+ + E
Sbjct: 954 IVENGKYAVDAFTQSHDFDIIFMDIQMPVMDGFEATRAIRKLHSPVRIVALTANSGEEYW 1013
Query: 114 EAFMQAGLDLCHTKPLSVDKIL 135
E + G+D TKP +VD +L
Sbjct: 1014 EQCRECGMDSRITKPFNVDDLL 1035
>gi|409422800|ref|ZP_11259880.1| sensor histidine kinase/response regulator [Pseudomonas sp. HYS]
Length = 942
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 17 ENPSAKNLR---LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDI 73
+NP + ++ L LV +D+ + I L+ LG VE+A +G EA+ L+++G FD+
Sbjct: 808 DNPQKREIQKLDLHILVAEDNIINQLILRDQLEELGCTVELAGDGNEALQLWKNG-HFDV 866
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
V D MP +NG E RE+R G I I+G T+ E E + AG++ C KP ++
Sbjct: 867 VLTDVNMPKLNGYELARELRRQGCSIPIIGATANAMRGEAELCLAAGMNHCLVKPFAL 924
>gi|397164689|ref|ZP_10488144.1| sensor kinase protein RcsC [Enterobacter radicincitans DSM 16656]
gi|396093837|gb|EJI91392.1| sensor kinase protein RcsC [Enterobacter radicincitans DSM 16656]
Length = 948
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E ++S+ +A I +N ++N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 805 EPQASATQA-IEDNEVSRNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|406697353|gb|EKD00616.1| two-component sensor molecule [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK---FDIVFIDKEMPVMN 84
ALVVDDD R + S L LG V +NGK+AVDL A FDIVF+D +MP+M
Sbjct: 557 ALVVDDDSLTRRLMSRMLSRLGHMVTTVDNGKKAVDLILENAADNPFDIVFLDNQMPIMT 616
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
G+EA +R +G +VG T +++ ++ +G + KP+
Sbjct: 617 GVEAVAALRQVGNDTYVVGCTGNALREDQDEYLSSGANAIIAKPV 661
>gi|358395569|gb|EHK44956.1| hypothetical protein TRIATDRAFT_88129, partial [Trichoderma
atroviride IMI 206040]
Length = 724
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGI 86
L +D+ + + S L SLGF+ +A NG EAV L + +D+V +D MPVM+G
Sbjct: 609 LAAEDNLVNQKVLSRVLSSLGFQDFTIASNGAEAVSLLTASPNAYDLVLMDISMPVMDGF 668
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
EATR+IR+ GI + I+ +T+ + E ++ G+D +KP++++K+L
Sbjct: 669 EATRKIRTCGIPVPIIAMTAYALRGDSETCLEKGMDDYISKPVNINKLL 717
>gi|410611631|ref|ZP_11322726.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola psychrophila 170]
gi|410168834|dbj|GAC36615.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola psychrophila 170]
Length = 826
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P AK L + LVVDD R I L+ G V AENG++A++ F+ FD++ +D
Sbjct: 700 PEAK-LSGYILVVDDSDINRIIAQFMLEGFGLTVATAENGQQALEQFQKHT-FDMILMDC 757
Query: 79 EMPVMNGIEATREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
EMP+M+G EA+R IR M + IV +T+ + R+ QAG+D +KP+ + +L
Sbjct: 758 EMPIMDGYEASRTIRDMQSGEARAPIVALTANAYQENRKKCEQAGMDDFLSKPIMEEALL 817
Query: 136 PLMEDLMK 143
+++ +K
Sbjct: 818 DILKKWLK 825
>gi|163782893|ref|ZP_02177889.1| chemotaxis protein CheY [Hydrogenivirga sp. 128-5-R1-1]
gi|159882014|gb|EDP75522.1| chemotaxis protein CheY [Hydrogenivirga sp. 128-5-R1-1]
Length = 123
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALVVDD IR HS L++ G++V+ AENG EA+++ K+D+V D MPVM+G E
Sbjct: 8 ALVVDDSLTIRIYHSSLLRNFGYEVDTAENGLEALEM-AMKKKYDLVLSDINMPVMDGFE 66
Query: 88 ATREIRSMGIK--IKIVGVTSLNSEAE-REAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
R++R + +V +T+LNSE + R+AFM G L KP++ L ++E ++K+
Sbjct: 67 FVRKLRKLDEYRFTPVVFITTLNSEEDKRKAFMSGG-TLYIVKPIN----LQVLEKILKS 121
>gi|254477790|ref|ZP_05091176.1| sensory box histidine kinase/response regulator [Ruegeria sp. R11]
gi|214032033|gb|EEB72868.1| sensory box histidine kinase/response regulator [Ruegeria sp. R11]
Length = 849
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R + L++ G V A NG+EAVDL R+G +FD++ +D MPVM+G A
Sbjct: 609 LLVEDNPINRDVAREMLRAAGHYVVEAHNGREAVDLARAG-RFDLILMDISMPVMDGRSA 667
Query: 89 TREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLSVDKILPL 137
TR IR++ + + +L + E+ AF++ G+D TKPLS D +L L
Sbjct: 668 TRAIRALNGPASLTPIVALTANVMAEEQAAFLEDGMDGILTKPLSKDALLGL 719
>gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 928
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
+LG E + A NP+ + L+V+D R I LK+ G ++ A NGK A
Sbjct: 657 ILGRTERHADLAG-ARNPTGNLDGMRLLLVEDIAANRMIIQHYLKTTGIDIDEAVNGKVA 715
Query: 62 VDLF-RSGAKFDIVFIDKEMPVMNGIEATREIRSM----GI-KIKIVGVTSLNSEAEREA 115
VD + R+G +FDIV +D+EMPVM+G+ ATREIR+ G+ + I+ +T+ +E
Sbjct: 716 VDTYARAGGQFDIVLMDREMPVMDGLAATREIRAFERGRGLPRTPIIALTAHAFVQHKEE 775
Query: 116 FMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
+QAG D +KP+ ++ +E + N
Sbjct: 776 SLQAGCDAFLSKPVRKSDLVQAIERTVPPN 805
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFIDKEMPVMN 84
LVVD + R + L G V AE+G A+ SG +D++F+D MP M+
Sbjct: 539 LVVDHNETNRLLLHDHLNRWGATVAWAEDGPAALAAAYEAEGSGTPYDVIFLDMLMPGMD 598
Query: 85 GIEATREIRSM 95
G+E ++R +
Sbjct: 599 GMEVAEKLRRL 609
>gi|254443113|ref|ZP_05056589.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198257421|gb|EDY81729.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 601
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
+K+K+M+ + LVV+DD + + + LK LG K +NGK+AV++ R GA
Sbjct: 461 RKSKLMQFTQPPEV----LVVEDDLVNQKVVTALLKKLGAKTVCVDNGKKAVEILRPGA- 515
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
FD+V +D MPVM+GIEAT EIR + IV +T+ + +A +AG++ TKP
Sbjct: 516 FDLVLMDISMPVMDGIEATEEIRKNDALKDLPIVALTAHSYSKSEKACFEAGMNGFLTKP 575
Query: 129 LSVDKILPLMEDLM 142
D++ ++ L+
Sbjct: 576 AKADQLFEIISKLI 589
>gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 756
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G ++ +AK + P+ + L L+V+D+ + + S LK LG V +AENGK+A++
Sbjct: 610 GLDTADRAKTIATPAVVSRALNLLLVEDNQVNQVVASSMLKKLGHTVTLAENGKQALEAL 669
Query: 66 RSG-AKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLD 122
+ G KFDIV +D +MPVM+G EATR IR + ++ VT+ + +R+ +++G++
Sbjct: 670 QQGEGKFDIVLMDCQMPVMDGYEATRTIRENPEWRNLPVIAVTANVMQGDRDDCIESGMN 729
Query: 123 LCHTKP 128
TKP
Sbjct: 730 DYITKP 735
>gi|427739079|ref|YP_007058623.1| PAS domain-containing protein [Rivularia sp. PCC 7116]
gi|427374120|gb|AFY58076.1| PAS domain S-box [Rivularia sp. PCC 7116]
Length = 1358
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
A I+++ SAKNL++ L+V+D R I L+ LG++ E NG++A+D + + FD
Sbjct: 1229 ATIIDSSSAKNLKI--LIVEDYVDSREIVVFMLEELGYQAEAVSNGEQALDKL-AESDFD 1285
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
IVF+D +MPVM+G EATR++R + + I+G+T+ +RE + AG+D +KP+
Sbjct: 1286 IVFMDCQMPVMDGYEATRQLRQREGEQRHTLIIGLTANAMYDDREKCLNAGMDNYLSKPV 1345
Query: 130 SVDKI 134
++ +
Sbjct: 1346 MMENL 1350
>gi|375104143|ref|ZP_09750404.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374664874|gb|EHR69659.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 959
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 77/125 (61%), Gaps = 5/125 (4%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E A+++R ALV +D+ R + L +LG ++AENG+EAVD+ + A +D++ +
Sbjct: 832 ERAVARSVR--ALVAEDNAVNREVALELLAALGVPADLAENGREAVDMAAARA-YDLILM 888
Query: 77 DKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D +MP M+G++ATR IR + + + IV +T+ +R A +QAG+D KP+ V ++
Sbjct: 889 DMQMPEMDGLQATRAIRQLAVHARTPIVAMTANAFAEDRAACLQAGMDDHIAKPVEVAEL 948
Query: 135 LPLME 139
+++
Sbjct: 949 QRVLD 953
>gi|116197335|ref|XP_001224479.1| hypothetical protein CHGG_06823 [Chaetomium globosum CBS 148.51]
gi|88178102|gb|EAQ85570.1| hypothetical protein CHGG_06823 [Chaetomium globosum CBS 148.51]
Length = 747
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLF 65
E K+ KI+ S KNL LVV+D+ + + L+S+GFK V +A NG EAV +
Sbjct: 545 EELQKELKIVS--SIKNL----LVVEDNLINQKVMLGMLRSIGFKNVGLASNGAEAVKIV 598
Query: 66 RSG-AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
R A +D V +D MP+M+G ATR+IR+ GI + IV +T+ + ++E +++G++
Sbjct: 599 RGKPAAYDAVLMDINMPIMDGFAATRDIRAAGIYVPIVAMTAYALKGDKERCLESGMNDY 658
Query: 125 HTKPLSVDKILPLM 138
KP++ ++++ ++
Sbjct: 659 IAKPVNKERLIKVL 672
>gi|386815517|ref|ZP_10102735.1| histidine kinase [Thiothrix nivea DSM 5205]
gi|386420093|gb|EIJ33928.1| histidine kinase [Thiothrix nivea DSM 5205]
Length = 448
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + L LG+KV +AE G +AV+L RS FD+V +D +MP MNG+EA
Sbjct: 328 LVVEDHKVNQLVAKGMLTKLGYKVTLAETGFQAVELLRSQDDFDLVLMDIQMPGMNGVEA 387
Query: 89 TREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
TR IR+ + I+ +T+ + + + ++ AG+D C TKP+ +
Sbjct: 388 TRIIRNEFPDRPLPILALTANAMKGDEQEYLAAGMDACLTKPIQI 432
>gi|410455254|ref|ZP_11309137.1| two-component sensor histidine kinase/response regulator [Bacillus
bataviensis LMG 21833]
gi|409929452|gb|EKN66530.1| two-component sensor histidine kinase/response regulator [Bacillus
bataviensis LMG 21833]
Length = 939
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 73/114 (64%), Gaps = 6/114 (5%)
Query: 29 LVVDDDCFIRTIHSM--ALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+V+DD R + ++ AL+ G VEVAENGK A+++ R A FD++F+D MPVM G
Sbjct: 817 LLVEDDG--RNVFALVTALERKGVTVEVAENGKRAIEMLRQQADFDLIFMDIMMPVMGGY 874
Query: 87 EATREIRS-MGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
EA + IR +G++ + I+ +T+ + ER+ M+AG KPL++D++ LM
Sbjct: 875 EAMQVIRQDLGMQSLPIIALTAKAMKGERDKCMEAGASDYIMKPLNIDQLFSLM 928
>gi|388569253|ref|ZP_10155656.1| multi-sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
gi|388263494|gb|EIK89081.1| multi-sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
Length = 2097
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD + I L+ G V +A NG+EA+ L R G FD+V +D +MP M+G++A
Sbjct: 1760 LVVDDSDINQEIAQHMLQREGAHVFLASNGREALALLRDGPHFDVVLMDVQMPEMDGLQA 1819
Query: 89 TREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TRE+R+ + +V +T+ ER + AG+D TKP+ D++L
Sbjct: 1820 TRELRADDNLCHLPVVALTAGALAEERRRALDAGMDHFLTKPIDPDQLL 1868
>gi|404447239|ref|ZP_11012316.1| two component transcriptional regulator [Mycobacterium vaccae ATCC
25954]
gi|403649176|gb|EJZ04601.1| two component transcriptional regulator [Mycobacterium vaccae ATCC
25954]
Length = 231
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G+EA+DL S + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIAS-ERPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|160012530|sp|A1TEL7.1|MPRA_MYCVP RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 231
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G+EA+DL S + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASD-RPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1142
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 25 RLFA----LVVDDDCFIRTIHSMA--LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
RLF L+ DDD +R I +++ L+ GF +E+A NGKEA++ + +++ +D
Sbjct: 1016 RLFLGKKLLLADDD--MRNIFALSAVLEDAGFSIEIATNGKEAINKLEDYPEIELILMDV 1073
Query: 79 EMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
MP M+GIEATR IR + I I+ VT+ + +RE ++AG + +KP+ VDK+L
Sbjct: 1074 MMPEMDGIEATRRIRQVPRWANIPIIAVTAKAMQGDREQCLEAGANDYISKPVDVDKLLS 1133
Query: 137 LME 139
L++
Sbjct: 1134 LIK 1136
>gi|374300935|ref|YP_005052574.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 880
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P A+ LR+ L+ +D+ R + LK G V ENG++A+++ + +FD+V +D
Sbjct: 748 PDARTLRI--LLAEDNEINRFLALELLKERGHVVTAVENGRDALNML-AKERFDLVLMDV 804
Query: 79 EMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+MP +NG+EATR IR+ + +I IV +T+ + +RE FM AG+D +KPL + +
Sbjct: 805 QMPEINGVEATRRIRAGKVPDTDPRIPIVALTAYALKGDREKFMSAGMDDYLSKPLDLKE 864
Query: 134 ILPLMEDL 141
+ ++E L
Sbjct: 865 LDRVLERL 872
>gi|116052653|ref|YP_792968.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|421176766|ref|ZP_15634425.1| kinase sensor protein [Pseudomonas aeruginosa CI27]
gi|237651845|gb|AAM15532.2|AF482691_1 probable sensor kinase [Pseudomonas aeruginosa]
gi|115587874|gb|ABJ13889.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|404530403|gb|EKA40403.1| kinase sensor protein [Pseudomonas aeruginosa CI27]
Length = 931
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
+NL L LVV+D+ + I +++LG VE+ +G+EA+ L A FD+V D MP
Sbjct: 808 RNLGLRVLVVEDNAINQLILRDQMEALGCSVELLFDGREAL-LHCQTACFDVVLTDINMP 866
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
MNG E T E+R G + I+G T+ ERE M AG++ C KP+ ++ + + ++
Sbjct: 867 NMNGYELTAELRRQGFRQPIIGATANAMREERERCMSAGMNDCLVKPVDLNALQNCLINI 926
Query: 142 MK 143
+K
Sbjct: 927 LK 928
>gi|398850944|ref|ZP_10607639.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
gi|398247792|gb|EJN33227.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
Length = 1214
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVVDD R + L+ LG + VAENG +DL+R G +FD+V +D MP+MNG
Sbjct: 968 LNVLVVDDHPANRLLMCQQLEFLGHRFSVAENGSSGLDLWRDG-QFDLVIVDCNMPLMNG 1026
Query: 86 IEATREIRSMGIKIK-----IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
E TR IR ++ + ++G T+ E + QAG+D C KPLS+ ++
Sbjct: 1027 YELTRAIRQHELQNRRTPCVVLGFTANAQPEEIQRCKQAGMDDCLFKPLSLSQL 1080
>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
Length = 1363
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV-DLFRSGAKFDIVFIDKEMPVMNGIE 87
L+ +D+ R + ++ L+ LG+ V +NG+EAV ++ R G ++ +V +D +MP M+G E
Sbjct: 1235 LLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQMPEMDGYE 1294
Query: 88 ATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
ATR+IR + G + I+ +T+ E +REA + AG+D +KPL++ K+ +++
Sbjct: 1295 ATRQIRRLETKSGRRTPIIALTANALEGDREACLAAGMDDYLSKPLTMGKLKAVLD 1350
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVVDD R I L+S + E A +G +A++ + FD+ +D +P +G
Sbjct: 1088 LHVLVVDDQAAHRQILRSYLESWHMRCEEAADGAQAIEKAQR-EHFDLAILDLLLPDTDG 1146
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+ +++R + +K+V +T+ + + + E + AG KP+ +++ ++ ++
Sbjct: 1147 FDLAQQLRRLSPSMKLVLLTAHHEQGQGERAVDAGFSAYLLKPIRQSQLMDVLANI 1202
>gi|423197540|ref|ZP_17184123.1| hypothetical protein HMPREF1171_02155 [Aeromonas hydrophila SSU]
gi|404631228|gb|EKB27864.1| hypothetical protein HMPREF1171_02155 [Aeromonas hydrophila SSU]
Length = 1084
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL LVVDD+ + + LK LG +V V NG EA+ +S FD+V D +MP+M+
Sbjct: 958 RLRVLVVDDNHANQVLLRQQLKHLGHEVSVRGNGAEALQASQS-QPFDLVITDCQMPLMD 1016
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
G E TR +R+ G + I G T+ + ERE + AG+D C KP+ + ++ + L ++
Sbjct: 1017 GFELTRRLRARGHTLPIWGFTAHATARERELCLAAGMDDCLYKPIGLARLRTALASLEQS 1076
Query: 145 N 145
+
Sbjct: 1077 S 1077
>gi|134300724|ref|YP_001114220.1| response regulator receiver protein [Desulfotomaculum reducens
MI-1]
gi|134053424|gb|ABO51395.1| response regulator receiver protein [Desulfotomaculum reducens
MI-1]
Length = 135
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+VDD +R + + +K G V A+NG EAVD R+ K D++F+D MP+M G
Sbjct: 5 LDVLIVDDQAGVRYLLEILVKESGHNVYTAQNGVEAVDKVRN-VKPDLIFMDVRMPIMGG 63
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+EA +I+S+ ++V +T+ ++E MQ G +C +KP VD+I L+ + N
Sbjct: 64 LEALGKIKSLAPNTEVVMMTAYSAEDTATIAMQKGDFMCMSKPFDVDEIKNLLGYITTN 122
>gi|371777434|ref|ZP_09483756.1| histidine kinase [Anaerophaga sp. HS1]
Length = 129
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + ++ L GF++EVA NGKEA+D + +DI+ +D MPVM+G+E
Sbjct: 7 LLVEDNVLNQKLINLTLSKYGFEIEVANNGKEALDKLKDN-HYDIILMDLMMPVMDGLET 65
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
TR IR G + I+G+T+ +A+R+ ++ G+D TKP +
Sbjct: 66 TRLIREQEKETGSRNIIIGLTANTYDADRDKCLKGGMDEYMTKPFDI 112
>gi|242038167|ref|XP_002466478.1| hypothetical protein SORBIDRAFT_01g008510 [Sorghum bicolor]
gi|241920332|gb|EER93476.1| hypothetical protein SORBIDRAFT_01g008510 [Sorghum bicolor]
Length = 201
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSL--GFKVEVAENGKEAVDLFRSGAK---FDIVFIDKEMPVM 83
L+V+D+ R + L+S G +++ A G EAV R G +D++ D +MPVM
Sbjct: 81 LLVEDEEIHRVLARALLRSAVGGVELDEARTGAEAVRRVRDGGAAGAYDLIITDGKMPVM 140
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+G EATR+IR+MG+ IVG++S ++ +AF++AG D KPLS +K++ ++
Sbjct: 141 DGREATRQIRAMGVTTPIVGLSSDTFPSDVDAFLKAGADDFTPKPLSKEKLVRIL 195
>gi|288573491|ref|ZP_06391848.1| CheA signal transduction histidine kinase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288569232|gb|EFC90789.1| CheA signal transduction histidine kinase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 717
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+S +K+ + K L+V+D RT+ L + G+ V+ A +G+E DLF S
Sbjct: 581 ASERKSTVATTVEPKEKPTSVLLVEDSITSRTLLKNILTASGYMVQTAVDGREGFDLF-S 639
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCH 125
FDIV D EMP MNG E TR IRS G K + +V VTSL+S +RE ++AG D
Sbjct: 640 RESFDIVVSDVEMPGMNGFELTRAIRSHGSKGEVPVVLVTSLDSRKDRERGVEAGADAYI 699
Query: 126 TK-PLSVDKILPLMEDLM 142
K K+L +M L+
Sbjct: 700 VKSSFDQTKLLDVMRRLL 717
>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium gilvum Spyr1]
gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium gilvum Spyr1]
Length = 231
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G+EA+DL S + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASD-RPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|440712941|ref|ZP_20893552.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436442329|gb|ELP35476.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1637
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKEMPVMN 84
L+ DD +R + LK G +VEVAENG++AVD+ + G F++ +D +MP ++
Sbjct: 1518 LIADDMRDVRFVAQHFLKKAGCEVEVAENGRQAVDMVVAASKDGKPFELCLMDMQMPELD 1577
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
G+ A RE+R GI++ ++ +T+ + R + G D +KPL V+++L + + L+
Sbjct: 1578 GLGAVRELRQRGIELPVIALTADAMKGTRRRLISEGFDEYLSKPLKVNRLLRIAKGLL 1635
>gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 1055
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 86/143 (60%), Gaps = 8/143 (5%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+G+SS+ A+ S RL L+V+DD R L+ G +V +AENG++A +L
Sbjct: 911 QGDSSAGAAETFFTGSGD--RLHVLLVEDDPSNRLPIQKLLEKAGHEVLLAENGRQAFEL 968
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIR---SMGIK--IKIVGVTSLNSEAEREAFMQA 119
+ + D + +D +MPVM+GIEATR IR ++G K + I+ +T+ + ++E F+ A
Sbjct: 969 L-AASDIDCILMDIQMPVMDGIEATRIIRESAALGPKKDVPIIALTAYAMDGDKEKFLAA 1027
Query: 120 GLDLCHTKPLSVDKILPLMEDLM 142
G++ KP++++ +L M++++
Sbjct: 1028 GMNGYAAKPVTIENLLQKMDEVL 1050
>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya zeae Ech1591]
gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
Length = 955
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD R + + L SLG++V A +G +A+D+ DIV D MP M+G
Sbjct: 832 LVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLAKNP-VDIVLTDVNMPNMDGYRF 890
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
T+++R MG + ++GVT+ ER+ +QAG+D C +KP+++D +
Sbjct: 891 TQQLREMGQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTL 936
>gi|389843015|ref|YP_006345095.1| signal transduction histidine kinase [Mesotoga prima MesG1.Ag.4.2]
gi|387857761|gb|AFK05852.1| signal transduction histidine kinase [Mesotoga prima MesG1.Ag.4.2]
Length = 935
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 72/120 (60%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P N++ L+ +D+ + + L+ G+ V+VA NGK+A+++ R+ +++++ +D
Sbjct: 687 PGQDNVKYRILLTEDNEANQLLIKEVLEKAGYSVDVAGNGKQAIEMVRNFNQYNLILMDM 746
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+MP+M+G EAT+ +R G KI IV +T+ + + E ++AG D KP+ +L ++
Sbjct: 747 QMPIMDGYEATKALRQEGYKIPIVALTAHTMQGDEEKTIEAGCDGFLGKPVRQSDLLEIV 806
>gi|410465593|ref|ZP_11318827.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981375|gb|EKO37952.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 656
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R AL LG+ V A NG+EA+ + S + DI+ +D +MPVM+GIE
Sbjct: 526 LLVEDERINRLTTGRALSRLGYNVLEAINGQEALQVL-SREQADIILMDIQMPVMDGIEC 584
Query: 89 TREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T IR + +I +V +T+ SE +RE F++ G++ +KP S+D++ ++E +K
Sbjct: 585 THHIRHGEVPGLSKRIPVVALTAYASEKDRERFLRLGMNDYLSKPHSIDQLAEVLEANLK 644
Query: 144 NN 145
N+
Sbjct: 645 NS 646
>gi|357473535|ref|XP_003607052.1| Sensor protein rcsC [Medicago truncatula]
gi|357496187|ref|XP_003618382.1| Sensor protein rcsC [Medicago truncatula]
gi|355493397|gb|AES74600.1| Sensor protein rcsC [Medicago truncatula]
gi|355508107|gb|AES89249.1| Sensor protein rcsC [Medicago truncatula]
Length = 151
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
KK + + P N AL+VD R + L+S+G + E A + +EA+ + +G K
Sbjct: 22 KKRESYDTPYPMN----ALLVDGVTATRRLEHHMLESIGIQTEPANSAQEAMQILLTGVK 77
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
FD +F+D ++P++NG E R++R+MGI+ K+VG+ + ++ + F +A + KPL+
Sbjct: 78 FDFIFVDFDLPIINGPELVRQMRAMGIQSKVVGMLTNFNDQNVQMFGEARANASTPKPLT 137
>gi|392549915|ref|ZP_10297052.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas spongiae
UST010723-006]
Length = 766
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 75/119 (63%), Gaps = 6/119 (5%)
Query: 12 KAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKF 71
KAK+ P N + L+V+D+ +TI S LK G+ E+AENG++A+D+ S F
Sbjct: 626 KAKL---PCRNNSNIRVLLVEDNKINQTIASTILKGFGYYFEIAENGQQAIDII-SNNSF 681
Query: 72 DIVFIDKEMPVMNGIEATREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
DI+ +D +MP+++GIEAT+ +R+ K + I+ +T+ +EAE E ++ G++ +KP
Sbjct: 682 DIILMDIQMPILDGIEATKILRNSYSKEALPIIALTANVTEAEVEKYLAIGMNAHLSKP 740
>gi|308125824|ref|ZP_07663531.1| signal transduction histidine kinase [Vibrio parahaemolyticus
K5030]
gi|308111583|gb|EFO49123.1| signal transduction histidine kinase [Vibrio parahaemolyticus
K5030]
Length = 231
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRL-FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
E K ++ E SA +R L+V+D+ + + S+ L G++ EVAENG+ AV++F
Sbjct: 90 EEPEFKQRVGETLSAAPMRRERILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMF 149
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAG 120
+ FDI+ +D MPVM+G EAT++IR S+G+ K I+ +T+ + + + +G
Sbjct: 150 QRDGGFDIILMDCMMPVMDGFEATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSG 209
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
+D KP+ +K+L +E++M
Sbjct: 210 MDAYVPKPVRKEKLLHQIENVM 231
>gi|410995138|gb|AFV96603.1| hypothetical protein B649_01445 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 1136
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 6/122 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV +D+ + + L+ LG ++ +A NG EA + ++G FD++F+D +MPV++GIE
Sbjct: 787 ALVAEDNIINQKLIRRTLEDLGLEITIASNGLEAFEKRKNG-NFDVIFMDIQMPVLDGIE 845
Query: 88 ATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
AT+EI I I+ +T+ + +RE F+ AG+D TKPL +I+ L+ + +
Sbjct: 846 ATQEILDFEEDYAQHHIPIIALTANALKGDRERFLAAGMDEYTTKPLVRSEIISLLNNFL 905
Query: 143 KN 144
+
Sbjct: 906 SH 907
>gi|449144060|ref|ZP_21774878.1| Signal transduction histidine kinase [Vibrio mimicus CAIM 602]
gi|449080384|gb|EMB51300.1| Signal transduction histidine kinase [Vibrio mimicus CAIM 602]
Length = 574
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDI 73
+ ++ AKN + LVV+D + + + L +G+ V +AENG EA++L ++ FD+
Sbjct: 443 LQQSTIAKNHHI--LVVEDTKTNQMVIQLLLNKMGYDVTIAENGLEAIELLEKNNNAFDL 500
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
V +D MP+M+GI ATR+IRS I I I+ +T+ + ++++ + AG++ KP+
Sbjct: 501 VLMDISMPIMDGIMATRKIRSQDIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKD 560
Query: 134 ILPLMEDLMKNN 145
I+ ++ + NN
Sbjct: 561 IMNVVNRFLPNN 572
>gi|410620824|ref|ZP_11331682.1| hypothetical protein GPAL_0175 [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410159707|dbj|GAC27056.1| hypothetical protein GPAL_0175 [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 821
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD R I L+ G V +AENG+EA+D + FD++ +D EMP+M+G EA
Sbjct: 703 LVVDDSEINRIIAQHMLEDFGLTVAIAENGQEALDQLQK-QTFDLILMDCEMPIMDGYEA 761
Query: 89 TREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+R+IRSM + + + +L ++A R+ +AG+D +KP+ + +L + + +K+
Sbjct: 762 SRKIRSMQSRDERTPIVALTADAFDENRKKCKEAGMDGFLSKPIMQNVLLDVAQQWIKS 820
>gi|373458372|ref|ZP_09550139.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
gi|371720036|gb|EHO41807.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
Length = 705
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV +D+ + + LK GF+VE+A NGKEAV+LFR FD+V +D +MPVM+G
Sbjct: 578 LKVLVAEDNRVNQKLMISILKRAGFQVELARNGKEAVELFRQKP-FDLVLMDMQMPVMDG 636
Query: 86 IEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
ATRE+R + G I +T+ + E E ++AG+D+ KP
Sbjct: 637 YTATREMRKLEEESGKHTPIFALTASDDAREIEGALKAGVDMVLRKP 683
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
AKN+ LVV+D R AL GFK+ A NGK A++ K D++ D M
Sbjct: 2 AKNI----LVVEDSLAQRFFIEKALAGDGFKITTAANGKLALEKIHE-QKPDLILSDIMM 56
Query: 81 PVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
P MNG+E + ++S I +V +T+LN E ++ G D K +L +
Sbjct: 57 PEMNGMELCKAVKSHPQLQTIPVVLMTTLNEPKEIIKIIECGADYLFLKEFEPGALLSFV 116
Query: 139 EDLMKN 144
D ++N
Sbjct: 117 NDALQN 122
>gi|332531837|ref|ZP_08407722.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038813|gb|EGI75255.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
haloplanktis ANT/505]
Length = 1046
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALVVDD+ + I S L L V +A+NG++A+D + DI+F+D +MPVM+G+E
Sbjct: 740 ALVVDDNKINQEIASALLARLDMTVNIADNGRDALDKIETN-NIDIIFMDVQMPVMDGLE 798
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
AT +R G K I+ +T+ +++A +AG+D KP+ D + +E +++N
Sbjct: 799 ATSILRERGYKTPIIAITAAADPNDKKAAFRAGMDDFLVKPIIFDSLYESIEKHLQSN 856
>gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1]
gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 501
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L+ LVVDD F + + LK G + A +G +AV L+R + +D +F+D+ MP M
Sbjct: 374 LKGHVLVVDDQEFNQMLLGTVLKQYGVTYDSANDGVDAVSLYRQNS-YDAIFMDENMPNM 432
Query: 84 NGIEATREIRSMG-----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
NGIEATR+IRS+ + I+ VT+ +++ F+ AG+D +KP + + +L ++
Sbjct: 433 NGIEATRQIRSIEEEHARTRTPIIAVTANALSYDKQRFLDAGMDEYISKPYTEEAVLNVL 492
Query: 139 EDLMKNN 145
+ + N+
Sbjct: 493 KHYLHNS 499
>gi|383790917|ref|YP_005475491.1| PAS domain-containing protein [Spirochaeta africana DSM 8902]
gi|383107451|gb|AFG37784.1| PAS domain S-box [Spirochaeta africana DSM 8902]
Length = 792
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L+ L+ +D + + L+ G +V A NG++AV++FR +F +VF+D +MPVM
Sbjct: 538 LQGVVLLAEDHEVNQELFRTILEHCGLQVVTASNGRDAVEMFRP-RQFAMVFMDVQMPVM 596
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
NG A R IR+ + IVGVT+ + ERE QAG++ KP + PL+ M
Sbjct: 597 NGYNAARRIRAADPDVPIVGVTANALQGEREKCRQAGMNDYLPKPFKSRDVYPLLRRYM 655
>gi|310791348|gb|EFQ26875.1| hsp90-like protein [Glomerella graminicola M1.001]
Length = 1305
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVM 83
RL L+VDD+ I + +K LG + + A +G+EA+D+FR +G F V +D MPVM
Sbjct: 1180 RLKFLLVDDNALNLKILASYMKKLGHEFQNAMDGQEALDIFRKAGGGFQFVLMDISMPVM 1239
Query: 84 NGIEATREIRSMG-----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+G EATR IR++ + I +TSL S + ++ +G+DL TKP+ + ++ ++
Sbjct: 1240 DGFEATRRIRAIEAEQCLTRCHIFALTSLASASAQQEAFASGIDLFLTKPVRLKELSKIL 1299
Query: 139 E 139
E
Sbjct: 1300 E 1300
>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
4028]
gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
4028]
Length = 1078
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
LRL L+ +D+ + L+ G +V +A+NG+E +DL R FD V +D +MPVM
Sbjct: 953 LRL--LLAEDEAINQLAMRTLLEKAGHRVSIAQNGQEVLDLLRE-EDFDCVLMDVQMPVM 1009
Query: 84 NGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+GIEATR IR+ + I+ +T+ +RE+F+QAG+D +KP+ +D ++ +
Sbjct: 1010 SGIEATRRIRTSPELAARKDVPIIALTAHAMSGDRESFLQAGMDDYLSKPVGLDDLVKAI 1069
Query: 139 EDL 141
L
Sbjct: 1070 AKL 1072
>gi|421846043|ref|ZP_16279194.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|411772812|gb|EKS56407.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Citrobacter freundii ATCC 8090 = MTCC 1658]
Length = 948
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
GE S + A N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 805 GEELSTALPTPDKAGATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL 864
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 865 -SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCL 923
Query: 126 TKPLSVD 132
+KP+++D
Sbjct: 924 SKPVTLD 930
>gi|407701521|ref|YP_006826308.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407250668|gb|AFT79853.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 702
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 77/124 (62%), Gaps = 8/124 (6%)
Query: 19 PSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDI 73
PS K L F AL+V+D+ + + LK +G ++AENG+EAV+ ++ K + I
Sbjct: 556 PSRKELSAFKALIVEDNEINQLVIKEQLKEVGLSADLAENGEEAVNKVKASLKENSPYAI 615
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLS 130
+ +D MPVM+G+EATR IR+MG + + V + +L + A ++E +++G+D +KP+
Sbjct: 616 ILMDCHMPVMDGLEATRHIRAMGEETRDVPIIALTANALTGDKEKCLKSGMDDFISKPVG 675
Query: 131 VDKI 134
V ++
Sbjct: 676 VSRL 679
>gi|358389509|gb|EHK27101.1| hypothetical protein TRIVIDRAFT_175844 [Trichoderma virens Gv29-8]
Length = 686
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGI 86
L +D+ + + S L SLGF+ V +A NG EAV + + +D+V +D MPVM+G
Sbjct: 557 LAAEDNLVNQKVLSRVLNSLGFQHVTIASNGAEAVSILSASPNTYDLVLMDISMPVMDGF 616
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
EATR+IR+ G I I+ +T+ + E ++ G+D +KP++++K+L
Sbjct: 617 EATRKIRTYGNPIPIIAMTAYALRGDSETCLEKGMDDYISKPVNINKLL 665
>gi|171912784|ref|ZP_02928254.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
4136]
Length = 821
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A +L ALVVDD R + + L +G +V +AENG++A+++ R ++ IVF+D M
Sbjct: 609 AAGYKLRALVVDDIAENREVLATLLTLVGCEVVLAENGRQAIEVVRV-SRPQIVFMDMRM 667
Query: 81 PVMNGIEATR----EIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
P ++GIEATR E SMG+KI ++L EREA+++ G D KP ++I
Sbjct: 668 PELDGIEATRRLVEEFGSMGLKIVATSASALAH--EREAYLKTGCDDFVAKPFRAERIYG 725
Query: 137 LMEDLM 142
+E L+
Sbjct: 726 CIETLL 731
>gi|392418028|ref|YP_006454633.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium chubuense NBB4]
gi|390617804|gb|AFM18954.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium chubuense NBB4]
Length = 228
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G+EA+DL S + D V +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASD-RPDAVVLDVMMPRVDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|345563876|gb|EGX46859.1| hypothetical protein AOL_s00097g285 [Arthrobotrys oligospora ATCC
24927]
Length = 1189
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 13/132 (9%)
Query: 19 PSAKNLRL----FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
PS+K RL LVV+D+ + I L + G + A NG+EA++L ++G KF IV
Sbjct: 1033 PSSKRPRLGDGYRVLVVEDNILNQKILRKQLAAQGCETVTANNGEEALELLKAGGKFTIV 1092
Query: 75 FIDKEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAFM-QAGLDLCHTKPL 129
+D EMPVM+G AT IR G + I+G TS N+ E+ FM AG+D TKP
Sbjct: 1093 LMDMEMPVMDGATATGLIREYEAGAGGHVPIIG-TSANARFEQVQFMINAGMDDVITKPF 1151
Query: 130 SVDKILPLMEDL 141
IL LME +
Sbjct: 1152 ---LILDLMEKI 1160
>gi|444377397|ref|ZP_21176628.1| Signal transduction histidine kinase [Enterovibrio sp. AK16]
gi|443678478|gb|ELT85147.1| Signal transduction histidine kinase [Enterovibrio sp. AK16]
Length = 693
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMN 84
L LV +D + + + L+ G V VA NGKEAVDL G +FD++ +D MPV+
Sbjct: 572 LSILVAEDSKANQMVAKLMLEKAGHHVVVANNGKEAVDLVHDGHVQFDMILMDMSMPVLC 631
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
GIEAT+++R+ G ++ I+ +T+ ++E M+AG+D TKP+
Sbjct: 632 GIEATKQLRAEGYELPIIALTANAMNEDKERCMEAGMDDFVTKPI 676
>gi|433657885|ref|YP_007275264.1| CheY-like receiver [Vibrio parahaemolyticus BB22OP]
gi|432508573|gb|AGB10090.1| CheY-like receiver [Vibrio parahaemolyticus BB22OP]
Length = 1051
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRL-FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
E K ++ E SA +R L+V+D+ + + S+ L G++ EVAENG+ AV++F
Sbjct: 910 EEPEFKQRVGETLSAAPMRRERILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMF 969
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAG 120
+ FDI+ +D MPVM+G EAT++IR S+G+ K I+ +T+ + + + +G
Sbjct: 970 QRDGGFDIILMDCMMPVMDGFEATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSG 1029
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
+D KP+ +K+L +E++M
Sbjct: 1030 MDAYVPKPVRKEKLLHQIENVM 1051
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF +VA NG+EAVD+FR+ +++ ++ +D MPVM+G EA
Sbjct: 771 LVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMFRT-SQYCLILMDCMMPVMDGFEA 829
Query: 89 TREIRSMGIK------IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T++IR + +K I I+ +T+ + + + G+D KP D
Sbjct: 830 TKQIRQIELKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAD 879
>gi|39726391|gb|AAR30138.1| putative histidine kinase M3EDp [Gibberella moniliformis]
Length = 1226
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 27/161 (16%)
Query: 7 ESSSKKAKIMENPSAKNLR----------LFALVVDDDCFIRTIHSMALKSLGFKVEVAE 56
ES+ + K + N S++N R L+VDD+ + +M +K GF E AE
Sbjct: 1065 ESNEELRKEVNNKSSQNTRKQKKPEMPGKAHVLLVDDNKINLNLLTMFMKKCGFSYEEAE 1124
Query: 57 NGKEAVDLFR--------SGA----KFDIVFIDKEMPVMNGIEATREIRSMGIKIK---- 100
NG+EAVD F+ GA FD + +D MPVMNG+EAT+ IR + + K
Sbjct: 1125 NGEEAVDTFKRSTIGDAEQGAPVKKHFDYILMDISMPVMNGVEATKRIRKIEAEYKVPRT 1184
Query: 101 -IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+ +T L S R+ M AG+DL KP+ ++ ++E+
Sbjct: 1185 TVFALTGLASADARQDAMSAGVDLFLPKPVKFAELKTMIEN 1225
>gi|28898529|ref|NP_798134.1| histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
AN-5034]
gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
Peru-466]
gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
AQ4037]
gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
Peru-466]
gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
AN-5034]
gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
AQ4037]
Length = 1051
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRL-FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
E K ++ E SA +R L+V+D+ + + S+ L G++ EVAENG+ AV++F
Sbjct: 910 EEPEFKQRVGETLSAAPMRRERILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMF 969
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAG 120
+ FDI+ +D MPVM+G EAT++IR S+G+ K I+ +T+ + + + +G
Sbjct: 970 QRDGGFDIILMDCMMPVMDGFEATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSG 1029
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
+D KP+ +K+L +E++M
Sbjct: 1030 MDAYVPKPVRKEKLLHQIENVM 1051
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF +VA NG+EAVDLFR+ +++ ++ +D MPVM+G EA
Sbjct: 771 LVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLFRT-SQYCLILMDCMMPVMDGFEA 829
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T++IR + +I I+ +T+ + + + G+D KP D
Sbjct: 830 TKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAD 879
>gi|333978015|ref|YP_004515960.1| response regulator receiver protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821496|gb|AEG14159.1| response regulator receiver protein [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 136
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD +R + + ++ G +V AENG A++ R D++F+D MP+M+G+E
Sbjct: 8 VLIVDDQPGVRYLLDILIREFGHRVHTAENGLVAIEKVRQ-IHPDVIFMDVRMPLMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
A R IR + ++ +T+ SE +E ++ G C +KP ++K+ L++DL N
Sbjct: 67 ALRRIRRIAPDTIVIIMTAYISEQTKEQALKNGALCCMSKPFDIEKVKALIQDLTWNQ 124
>gi|417323449|ref|ZP_12109977.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
Length = 1051
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRL-FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
E K ++ E SA +R L+V+D+ + + S+ L G++ EVAENG+ AV++F
Sbjct: 910 EEPEFKQRVGETLSAAPMRRERILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMF 969
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAG 120
+ FDI+ +D MPVM+G EAT++IR S+G+ K I+ +T+ + + + +G
Sbjct: 970 QRDGGFDIILMDCMMPVMDGFEATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSG 1029
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
+D KP+ +K+L +E++M
Sbjct: 1030 MDAYVPKPVRKEKLLHQIENVM 1051
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + GF +VA NG+EAVD+FR+ +++ ++ +D MPVM+G EA
Sbjct: 771 LVVDDNTVNQKIAGLHATKAGFSFDVAANGEEAVDMFRT-SQYCLILMDCMMPVMDGFEA 829
Query: 89 TREIRSMGIK------IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T++IR + +K I I+ +T+ + + + G+D KP D
Sbjct: 830 TKQIRQIELKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAD 879
>gi|424031780|ref|ZP_17771214.1| response regulator [Vibrio cholerae HENC-01]
gi|408877501|gb|EKM16567.1| response regulator [Vibrio cholerae HENC-01]
Length = 1053
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 11/148 (7%)
Query: 6 GESSSKKAKIMENPSAKNLRLFA------LVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
G S K+K + P ++ L+V+D+ + + S+ L G++ E+AENG+
Sbjct: 906 GTGISAKSKPQDKPEPTSINTLPSRSERILLVEDNTVNQKVASLLLSKAGYQFEIAENGQ 965
Query: 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GI-KIKIVGVTSLNSEAERE 114
AVD+F+ FDI+ +D MPVM+G EAT+EIR+ G+ K I+ +T+ + + +
Sbjct: 966 IAVDMFQQDNGFDIILMDCMMPVMDGFEATKEIRAYEKNSGLPKTPIIALTASVVDDDIQ 1025
Query: 115 AFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+G+D KP+ +K+L +E ++
Sbjct: 1026 RCYDSGMDAYVPKPVRKEKLLHQIESVI 1053
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 16/127 (12%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF ++A NG EAV++F+ ++ ++ +D MPVM+G EA
Sbjct: 773 LVVDDNTVNQKIAGLHVAKAGFTFDLAANGLEAVEMFKKN-QYSLILMDCMMPVMDGFEA 831
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI-------- 134
T++IR + +KI I+ +T+ + + + G+D KP + +
Sbjct: 832 TQKIRQLEHEQNRSVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKANILKEKLAKAT 891
Query: 135 -LPLMED 140
+P++ED
Sbjct: 892 AVPIVED 898
>gi|213617471|ref|ZP_03372297.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 162
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 18 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 77
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 78 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 136
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 137 LSKPVTLDAL 146
>gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16]
gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain
(hybrid) [Ralstonia eutropha H16]
Length = 1106
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E ++ +A + ++L L+V+D + + L++LG KV++A +G EA+ L
Sbjct: 854 EVTATQAPVPARDDTPAVQLALLLVEDHPINQVVMREQLENLGQKVDLAGDGPEAL-LMA 912
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
SG +D+V D +MP M+G R +R G+ IV VT+ E QAG+D C T
Sbjct: 913 SGRHYDLVLTDLQMPGMDGFTLARCLRDAGLATPIVAVTASVGPDVSERCQQAGIDRCLT 972
Query: 127 KPLSVDKILPLMEDL 141
KP+ + + L+EDL
Sbjct: 973 KPVGLGTLRKLLEDL 987
>gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 1089
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL LVVDD+ + + LK LG +V V NG EA+ ++ F+++ D +MP+M+
Sbjct: 963 RLRVLVVDDNHANQVLLRQQLKHLGHEVSVRGNGAEALRAIQN-QDFELIITDCQMPLMD 1021
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
G E TR +R+ G + I G T+ + ERE + AG+D C KP+ + ++ + L +
Sbjct: 1022 GFELTRRLRARGHTLPIWGFTAHATARERERCLAAGMDECLYKPIGLARLRTALASLEQT 1081
Query: 145 N 145
N
Sbjct: 1082 N 1082
>gi|390601716|gb|EIN11110.1| hypothetical protein PUNSTDRAFT_119885 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 793
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG---AKFDIVFIDKEMPV 82
L+ LVVDDD RT+ + L LG +++ A +G++A+D+ G +D + +D MPV
Sbjct: 652 LYVLVVDDDGMTRTLMARMLTKLGCRIDTASDGQQALDMILGGDPKKPYDWISLDNYMPV 711
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
M G EA +E+R+ G K ++G T ++ +++ AG D KP+ + + +++
Sbjct: 712 MTGEEAVKELRARGRKDLVIGCTGTALTEDQASYIAAGADRVLAKPIMLKDLKAVLD 768
>gi|255084277|ref|XP_002508713.1| predicted protein [Micromonas sp. RCC299]
gi|226523990|gb|ACO69971.1| predicted protein [Micromonas sp. RCC299]
Length = 149
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + +K G +VA NG EAV++ + G +D++ +D +MPVM+G+EA
Sbjct: 2 LIVEDNLMNQKVAKVVVKHCGMTADVANNGAEAVEIMKGGGLYDVILMDIQMPVMDGLEA 61
Query: 89 TREIRSMG-----IKIKIVGVTSLNSEAE--REAFMQAGLDLCHTKPLSVDKILPLM 138
T+ IR M K + TS N+ AE RE + +AG+D TKP+ K+ L+
Sbjct: 62 TQRIREMEATGTIAKGNYIVATSANATAENHREGY-EAGMDEYITKPIYPSKLKELL 117
>gi|224125030|ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222857861|gb|EEE95408.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1001
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK------------FDIVFI 76
LVV+D ++ + S LK LG VEV NGKEA D +DI+F+
Sbjct: 869 LVVEDSMLLQRLTSSVLKKLGASVEVCTNGKEAFDEVSKSLSDQKKEGDSISLPYDIIFM 928
Query: 77 DKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D EMPVMNG EATR IR G+ I I+ +T+ + AG+D TKPL
Sbjct: 929 DCEMPVMNGFEATRLIRMEEEQYSGVHIPIIALTAHAMPEQTSKVFDAGMDFHLTKPLEE 988
Query: 132 DKILPLM 138
K+L ++
Sbjct: 989 RKMLEVI 995
>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
Length = 717
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVMNGIE 87
L+ +D+ + + + L G++VEVA NG++AVDLF R FD++ +D +MP M+G+
Sbjct: 596 LLAEDNPVNQKLAVLILNKAGYQVEVASNGRKAVDLFTRRPENFDLILMDIQMPEMDGLA 655
Query: 88 ATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
AT+E+RS G + IV +T+ + +RE ++AG++ TKP+ + I ++E
Sbjct: 656 ATKELRSRGFNTVPIVAMTANAMKGDREICLKAGMNDYITKPVKREIIFEIIE 708
>gi|329896032|ref|ZP_08271268.1| putative sensor protein [gamma proteobacterium IMCC3088]
gi|328921992|gb|EGG29356.1| putative sensor protein [gamma proteobacterium IMCC3088]
Length = 1448
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Query: 14 KIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDI 73
++ME + K+ L LVVDD R I S L+ G + ++A +G EA++ ++ + ++
Sbjct: 1185 RLMETKARKS-SLKVLVVDDIEINRKIMSETLRYFGIECDLASDGIEAIEKYKRTSH-NL 1242
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIK----IVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+F+D +MP M+G+EATR IR I I+ VT+ + E+EA + +G++L KP
Sbjct: 1243 IFMDCQMPRMDGLEATRRIREYSATINTEPFIIAVTAGTTGEEQEACINSGMNLVIEKPF 1302
Query: 130 SVDKILPLMEDLMKNN 145
+ +KI L+E++ N
Sbjct: 1303 THEKISLLIEEISGKN 1318
>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 724
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
+LRL L+VDD + I M L+ LGF+ ++A NG EA+D+ + +D+VF+D +MP
Sbjct: 586 SLRL--LIVDDHPLNQGIARMILRRLGFQADIAVNGVEALDM-TANRNYDLVFMDCQMPE 642
Query: 83 MNGIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
M+G EATREIR G + IV +T+ E +R+ + G+D TKP+ +I +
Sbjct: 643 MDGFEATREIRKREKNGTRTTIVAMTASALEEDRQKCLDIGMDDYLTKPVKPQEIAQALL 702
Query: 140 D 140
D
Sbjct: 703 D 703
>gi|218441594|ref|YP_002379923.1| CheA signal transduction histidine kinase [Cyanothece sp. PCC 7424]
gi|218174322|gb|ACK73055.1| putative CheA signal transduction histidine kinase [Cyanothece sp.
PCC 7424]
Length = 1127
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
K A M+ P+ N L+VDD +R + S++ K G++VE A +G+EA + RSG
Sbjct: 813 KAAMAMQPPTEANGEQTVLIVDDSITVRELLSLSFKKAGYRVEQARDGQEAWEKLRSGLP 872
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
DIVF D EMP MNG+E I+ I I + ++S +E R+ + G TKP
Sbjct: 873 CDIVFCDIEMPRMNGLELLANIQKDEKLIHIPVAVLSSRGAEKHRKVAAKLGASGYFTKP 932
Query: 129 LSVDKIL 135
+ +L
Sbjct: 933 YTEKDLL 939
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+ L++DD +R + SM G+++E A +G+EA + RSG D++ D EM
Sbjct: 993 AQKASHLVLIIDDSVMVREMLSMTFGKDGYEIEQARDGQEAWEKLRSGLPCDLILCDIEM 1052
Query: 81 PVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
P MNG+E ++ +I + +TS ++ + Q G KP +D +L
Sbjct: 1053 PRMNGLEFLSRVQEDEKLSQIPVAMITSRGAQKMQNIAAQRGARGYFVKPY-IDSVL 1108
>gi|452980760|gb|EME80521.1| hypothetical protein MYCFIDRAFT_95252, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1003
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 5 EGESSSKKAKIM-ENP--SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
E +S K +IM + P S+ + L+V+D+ + + L GF+V VA +G+EA
Sbjct: 856 ESPPTSAKDEIMVDQPKVSSDATDMNVLIVEDNLVNQRVMRKQLTRAGFRVTVANHGREA 915
Query: 62 VDLFRSG----AKFDIVFIDKEMPVMNGIEATREIR------SMGIKIKIVGVTSLNSEA 111
+D AK +V +D EMPVM G+E TR IR ++ I+GVT+ N+ A
Sbjct: 916 LDCLHPAGTNPAKIGVVLMDIEMPVMGGLECTRIIRLRERESQRTSRMPILGVTA-NARA 974
Query: 112 EREA-FMQAGLDLCHTKPLSVDKILPLME 139
E++A + AG+D TKP + ++LP +E
Sbjct: 975 EQQAEAIDAGMDRVVTKPFHMSELLPAIE 1003
>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 904
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-----RSGAKFDIVFIDKEMPVM 83
LVV+DD R L LGF V A NG+EA+D ++ D++ +D +MPVM
Sbjct: 770 LVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLAGQTPQAQPSVDLILMDIQMPVM 829
Query: 84 NGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+G+EATR IR I+ +T+ +RE F+QAGLD KP+ V ++L M
Sbjct: 830 DGLEATRRIRENADGRFDPLTPIIALTAYAMAGDRERFLQAGLDDHLAKPVKVAEMLDAM 889
Query: 139 E 139
+
Sbjct: 890 K 890
>gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 830
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+ L L LV +D+ + + + L+ LG++ +V NG EAVD S ++D+V +D +M
Sbjct: 701 AERLPLRILVAEDNVVNQKVARLLLRRLGYRCDVVANGLEAVDAV-SRRRYDLVLMDMQM 759
Query: 81 PVMNGIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
P MNGIEATR +R G + IV +T+ +REA + AG+D +KPL V ++ +
Sbjct: 760 PEMNGIEATRRLRGEARPGSPLHIVAMTANAMREDREACLSAGMDDFVSKPLRVSDLVTV 819
Query: 138 MEDL 141
+E L
Sbjct: 820 LERL 823
>gi|409195797|ref|ZP_11224460.1| sensory box histidine kinase/response regulator [Marinilabilia
salmonicolor JCM 21150]
Length = 127
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + L GFK++VA NGKEA+D + +DI+ +D MPVM+G+EA
Sbjct: 7 LLVEDNVLNQKLIFLTLSKYGFKIDVANNGKEALDKLQI-KNYDIILMDLMMPVMDGLEA 65
Query: 89 TREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
TR IR G + I+G+T+ +A+RE ++ G+D +KP ++
Sbjct: 66 TRNIRKREQDTGNRNIIIGLTANTYDADREKCIKEGMDEYMSKPFDIE 113
>gi|171676487|ref|XP_001903196.1| hypothetical protein [Podospora anserina S mat+]
gi|170936310|emb|CAP60968.1| unnamed protein product [Podospora anserina S mat+]
Length = 846
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 8/135 (5%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGK 59
+ + E + S + K+ E S K+L L+V+D+ + + L+SLGFK+ +A NG
Sbjct: 524 LAMPEADVVSLRQKLAEVASIKSL----LLVEDNVINQKVMLGLLRSLGFKITALASNGS 579
Query: 60 EAVDLFRSG-AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ 118
EAV++ RS A +DI+ +D MP+M+G +A++ IR GI + IV +T+ + +RE ++
Sbjct: 580 EAVNMVRSKPAAYDIILMDINMPIMDGHQASKAIRDAGILVPIVAMTAYALKGDRERCLE 639
Query: 119 AGLDLCHTKPLSVDK 133
G++ KP VDK
Sbjct: 640 HGMNDYIPKP--VDK 652
>gi|337749678|ref|YP_004643840.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
KNP414]
gi|336300867|gb|AEI43970.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
KNP414]
Length = 639
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R+ L+ +D+ + ++ LG+ V NG EAVD A +D++F+D +MP+MN
Sbjct: 514 RIRILIAEDNDINTLVLKRVIEKLGYSATVVSNGAEAVDAAIRHA-YDLIFMDVQMPLMN 572
Query: 85 GIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
G+EAT+ I++M G IV VT+ + +RE ++ AG+D +KP+S+D + ++E
Sbjct: 573 GLEATKAIKAMSAEGSCPYIVAVTAHAIKGDREKYLAAGMDEYISKPISMDAVSGIIEQF 632
Query: 142 M 142
+
Sbjct: 633 L 633
>gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
OB3b]
gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
OB3b]
Length = 1148
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+M+ P++ R LVVDDD S L++ GF VEVA +G +A+ + GA FDIV
Sbjct: 1021 VMDAPTSSRGRR-VLVVDDDPRNLLALSKGLRANGFDVEVAADGAKALAMLTDGAVFDIV 1079
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D MP M+G E R +RS+ ++ IV VT+ + E +++G +KP+ +D++
Sbjct: 1080 LTDIMMPDMDGYELIRRMRSLFARVPIVAVTAKAMPGDAEQCIRSGATAYLSKPIDLDRL 1139
Query: 135 LPLMEDLM 142
L M+ +
Sbjct: 1140 LTAMDQWL 1147
>gi|297602266|ref|NP_001052257.2| Os04g0212200 [Oryza sativa Japonica Group]
gi|255675229|dbj|BAF14171.2| Os04g0212200 [Oryza sativa Japonica Group]
Length = 173
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
NLR AL+V+D R I S L+ + V +NGKEAV+LF G FDIV D MP+
Sbjct: 50 NLR--ALLVEDIKVNRMILSQMLRKFQVETTVVQNGKEAVELFLGGETFDIVLTDNLMPI 107
Query: 83 MNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
M G EA +IR+MG + IVGV S+++ + E F AG DLC K
Sbjct: 108 MTGPEAISKIRAMGATDVMIVGV-SVDANSMEE-FKDAGADLCVPK 151
>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
Ech586]
gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
Ech586]
Length = 962
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
++RL LVVDD R + + L SLG++V A +G +A+D+ DIV D MP
Sbjct: 837 DIRL--LVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLAKNP-VDIVLTDVNMPN 893
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ +R MG + ++GVT+ ER+ +QAG+D C +KP+++D +
Sbjct: 894 MDGYRFTQRLREMGQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTL 945
>gi|406934281|gb|EKD68627.1| hypothetical protein ACD_47C00511G0002 [uncultured bacterium]
Length = 811
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 45 LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104
+K LG + V ENG AV+ RS KFD++F+D +MP M+GIEATR+IR GI+ IV +
Sbjct: 710 MKILGHDITVVENGLRAVEAARS-QKFDLIFMDVQMPEMDGIEATRKIRESGIETPIVAI 768
Query: 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
T+ + + ++ + AG+D +KP++V +I L++
Sbjct: 769 TAAALKDDIDSCLSAGMDAYTSKPINVVEIQELIK 803
>gi|374579438|ref|ZP_09652532.1| PAS domain S-box [Desulfosporosinus youngiae DSM 17734]
gi|374415520|gb|EHQ87955.1| PAS domain S-box [Desulfosporosinus youngiae DSM 17734]
Length = 908
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 9 SSKKAKIME--NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
SSK+A + P AK L++ L+V+DD + S+ LK G V+ A NG EA+ L
Sbjct: 651 SSKQAHLETGVTPVAKPLKI--LIVEDDKVNLKVLSLMLKGKGHFVDTASNGSEAL-LLH 707
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRS---MGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
++D +F+D +MP+M+GIEAT+ IR + I+ +T+ + ++E F+ G+D
Sbjct: 708 GRTQYDAIFMDIQMPIMDGIEATKHIRQREGVSRHTPIIALTAYALKGDKEKFLSCGMDE 767
Query: 124 CHTKPLSVDKILPLMEDLMK 143
KP++++ + ++E +++
Sbjct: 768 YIPKPINMETLFTILEQVVE 787
>gi|311278386|ref|YP_003940617.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
gi|308747581|gb|ADO47333.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
Length = 1061
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
PS L L+ DD R + L LG + +NG A+ + G +D++ D
Sbjct: 824 PSVIRGELRVLIADDHPSSRLLLKRQLAMLGIAADEVDNGAAALRYIQQG-HYDLLITDF 882
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
MPVMNGIE TR+IR ++ I G+T+ E ER+ + AG++ C KP+++ +I L+
Sbjct: 883 NMPVMNGIELTRQIRRFDPELTIWGLTATAQEHERDRSLAAGMNACLFKPITLSQISQLL 942
Query: 139 ED 140
D
Sbjct: 943 SD 944
>gi|359431887|ref|ZP_09222293.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20652]
gi|357921409|dbj|GAA58542.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20652]
Length = 778
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALVVDD+ + I S L L V +AENG++A+D DI+F+D +MPVM+G+E
Sbjct: 472 ALVVDDNRINQEIASALLARLDMTVIIAENGRDALDKVEIN-DIDIIFMDVQMPVMDGLE 530
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
ATR +R G K I+ +T+ +++A +++G+D KP+ D +E
Sbjct: 531 ATRILRERGYKTPIITITAAADPNDKKAALRSGMDDFLVKPIIFDAFYECIE 582
>gi|383789398|ref|YP_005473972.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
gi|383105932|gb|AFG36265.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
Length = 818
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +DD + + + ++ LG++ E+A G+EA+DL +G +F +V +D +MPV++G +A
Sbjct: 698 LIAEDDMINQRVIAHLVERLGYRTEMAATGQEAIDLLSAG-EFALVLMDVQMPVLDGTDA 756
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
R IR+ I I+ VT+ E+E F+ AG+D TKPL+ + + + +L+
Sbjct: 757 ARMIRTGAAGEHNRGIPIIAVTAHVQPEEQERFLAAGMDAIQTKPLNAEALSQQIAELL 815
>gi|375149469|ref|YP_005011910.1| integral membrane sensor hybrid histidine kinase [Niastella
koreensis GR20-10]
gi|361063515|gb|AEW02507.1| integral membrane sensor hybrid histidine kinase [Niastella
koreensis GR20-10]
Length = 788
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ F + L+ G VEVA NG+EA++ + G K+D+V +D MPVM+G EA
Sbjct: 675 LVVEDNPFNIMVAQSLLERSGAIVEVATNGEEALEKIQPG-KYDLVLMDLNMPVMDGFEA 733
Query: 89 TREIRSMGIKIKIVGVT-SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
TR +R+ GI + ++ +T SL +E E++ AGL KP + D++ ++
Sbjct: 734 TRHLRARGITLPVIALTASLPAEVEKDV-QSAGLTDIVVKPFNPDELFRVL 783
>gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1713
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 29 LVVDDDCFIRTIHSMALK--SLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+VDDD +R ++++ K GF+VE+A NGKEAV+ F++V +D MP M+G
Sbjct: 1595 LIVDDD--MRNTYALSKKLIEYGFEVEMAHNGKEAVEQLTEDKSFELVLMDTMMPEMDGY 1652
Query: 87 EATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+AT+ IR M ++ I+ +T+ +RE +Q+G TKP+ +K+L +M
Sbjct: 1653 QATKRIREMEHYKQVPIIALTAKTMPEDREKSLQSGASEYLTKPIDFEKLLSIM 1706
>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810]
gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810]
Length = 1051
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRL-FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
E K ++ E SA +R L+V+D+ + + S+ L G++ EVAENG+ AV++F
Sbjct: 910 EEPEFKQRVGEALSAAPMRRERILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMF 969
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAG 120
+ FDI+ +D MPVM+G EAT++IR S+G+ K I+ +T+ + + + +G
Sbjct: 970 QRDGGFDIILMDCMMPVMDGFEATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSG 1029
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
+D KP+ +K+L +E++M
Sbjct: 1030 MDAYVPKPVRKEKLLHQIENVM 1051
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF +VA NG+EAVD+FR+ +++ ++ +D MPVM+G EA
Sbjct: 771 LVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMFRT-SQYCLILMDCMMPVMDGFEA 829
Query: 89 TREIRSMGIK------IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T++IR + +K I I+ +T+ + + + G+D KP D
Sbjct: 830 TKQIRQIELKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAD 879
>gi|332142599|ref|YP_004428337.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'Deep ecotype']
gi|327552621|gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein
[Alteromonas macleodii str. 'Deep ecotype']
Length = 891
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L +LG ++AE+GK+AV + ++D+V +D +MPVM+G EA
Sbjct: 772 LLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQKLENAPQYDLVLMDVQMPVMDGYEA 831
Query: 89 TREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TR++R G + I+G+++ + +R++ M AG++ TKP+
Sbjct: 832 TRQLRERGFTDVPIIGLSANAMKEDRQSAMDAGMNDYLTKPI 873
>gi|262402142|ref|ZP_06078703.1| signal transduction histidine kinase [Vibrio sp. RC586]
gi|262350924|gb|EEZ00057.1| signal transduction histidine kinase [Vibrio sp. RC586]
Length = 569
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 65/101 (64%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L +G+ V +AENG+EA++L + FD++ +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKMGYDVTIAENGREAIELLEMNSIFDLILMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T++IRS I I I+ +T+ + ++++ + AG++ KP+
Sbjct: 515 TKKIRSKNIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPI 555
>gi|406890819|gb|EKD36611.1| hypothetical protein ACD_75C01440G0002, partial [uncultured
bacterium]
Length = 528
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 15 IMENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
I++ P+A R A LVV+D+ + S L+ LG V +A NG +A+ + R
Sbjct: 393 IVQTPAAVRTRPLAPIRILVVEDEKINALVISAMLRKLGHDVHLATNGLQALQVIRE-CD 451
Query: 71 FDIVFIDKEMPVMNGIEATREIRSM-GIKIKIVGVTSLNSEA---EREAFMQAGLDLCHT 126
FD +F+D +MP M+G+E TR IR+M G + K+V + +L + A +RE F+ AG+D T
Sbjct: 452 FDCIFMDIQMPEMDGVETTRAIRTMTGRQKKVVPIIALTAHAMKGDRERFIDAGMDDYLT 511
Query: 127 KPLSVDKILPLMEDLM 142
KP+ + ++ ++ ++
Sbjct: 512 KPVDMGSLVEVLRKVI 527
>gi|32489422|emb|CAE03707.1| OSJNBa0021F22.1 [Oryza sativa Japonica Group]
gi|38346739|emb|CAE04304.2| OSJNBa0083I11.14 [Oryza sativa Japonica Group]
gi|125547276|gb|EAY93098.1| hypothetical protein OsI_14899 [Oryza sativa Indica Group]
gi|125589443|gb|EAZ29793.1| hypothetical protein OsJ_13850 [Oryza sativa Japonica Group]
Length = 132
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
NLR AL+V+D R I S L+ + V +NGKEAV+LF G FDIV D MP+
Sbjct: 9 NLR--ALLVEDIKVNRMILSQMLRKFQVETTVVQNGKEAVELFLGGETFDIVLTDNLMPI 66
Query: 83 MNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
M G EA +IR+MG + IVGV S+++ + E F AG DLC K
Sbjct: 67 MTGPEAISKIRAMGATDVMIVGV-SVDANS-MEEFKDAGADLCVPK 110
>gi|409427382|ref|ZP_11261891.1| sensory box histidine kinase/response regulator [Pseudomonas sp. HYS]
Length = 1154
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD R + S L+ LG +V ENG+ A+ +++GA FD+V D MPVMNG
Sbjct: 919 LVVDDLSASRLVLSQQLEFLGHEVLAVENGQSALQAWQNGA-FDLVLSDCNMPVMNGYAL 977
Query: 89 TREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
R IR S I IVG T+ + ER ++AG+D C KP+++ +++ ++E L
Sbjct: 978 ARGIRRLERSSQRPAIAIVGCTANAMKEERARCLEAGMDECLVKPVALAQLVAVIEKL 1035
>gi|410862803|ref|YP_006978037.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii AltDE1]
gi|410820065|gb|AFV86682.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii AltDE1]
Length = 891
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L +LG ++AE+GK+AV + ++D+V +D +MPVM+G EA
Sbjct: 772 LLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQKLENAPQYDLVLMDVQMPVMDGYEA 831
Query: 89 TREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TR++R G + I+G+++ + +R++ M AG++ TKP+
Sbjct: 832 TRQLRERGFTDVPIIGLSANAMKEDRQSAMDAGMNDYLTKPI 873
>gi|410462674|ref|ZP_11316238.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984211|gb|EKO40536.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 1207
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+V+D+ R S L+S G +V +AENG+ A++ + A D+V +D +MPVM+
Sbjct: 954 RLRVLLVEDNRVNRVFASDLLESRGHEVILAENGRAALEYLVANA-VDVVLMDIQMPVMD 1012
Query: 85 GIEATREIRSMGIKIK----IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
G+ ATR IR+ + I ++G+++ + ERE F+ AG D TKP+ V+ ++
Sbjct: 1013 GLAATRAIRAGHLDIDPGLPVIGLSAYAMDQERERFLAAGFDDYITKPIDVETFFAVVAR 1072
Query: 141 LM 142
++
Sbjct: 1073 VL 1074
>gi|32481649|gb|AAP84163.1| kinase sensor protein of two component regulatory system
[Pseudomonas aeruginosa PA14]
Length = 931
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
+NL L LVV+D+ + I +++LG VE+ +G+EA+ L A FD+V D MP
Sbjct: 808 RNLGLRVLVVEDNAINQLILRDQMEALGCSVELLFDGREAL-LHCQTACFDVVLTDINMP 866
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
MNG E T E+R G + I+G T ERE M AG++ C KP+ ++ + + ++
Sbjct: 867 NMNGYELTAELRRQGFRQPIIGATVNAMREERERCMSAGMNDCLVKPVDLNALQNCLINI 926
Query: 142 MK 143
+K
Sbjct: 927 LK 928
>gi|427799241|ref|ZP_18967234.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|414064599|gb|EKT45507.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 180
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 36 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 95
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 96 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 154
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 155 LSKPVTLD 162
>gi|411008542|ref|ZP_11384871.1| virulence sensor protein BvgS [Aeromonas aquariorum AAK1]
Length = 1084
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL LVVDD+ + + LK LG +V V NG EA+ +S FD+V D +MP+M+
Sbjct: 958 RLRVLVVDDNHANQVLLRQQLKHLGHEVCVRGNGAEALQASQS-QDFDLVITDCQMPLMD 1016
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
G E TR +R+ G + I G T+ + ERE + AG+D C KP+ + ++ + L
Sbjct: 1017 GFELTRRLRARGHTLPIWGFTAHATARERELCLAAGMDDCLYKPIGLARLRTALASL 1073
>gi|424038107|ref|ZP_17776757.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein, partial [Vibrio cholerae HENC-02]
gi|408894769|gb|EKM31371.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein, partial [Vibrio cholerae HENC-02]
Length = 586
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 6 GESSSKKAKIMENPSAKNLRLFA------LVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
G S K+K + P ++ L+V+D+ + + S+ L G++ E+AENG+
Sbjct: 446 GTGISAKSKPQDKPEPTSINTLPSRSERILLVEDNTVNQKVASLLLSKAGYQFEIAENGQ 505
Query: 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GI-KIKIVGVTSLNSEAERE 114
AVD+F+ FDI+ +D MPVM+G EAT+EIR+ G+ K I+ +T+ + + +
Sbjct: 506 IAVDMFQQDNGFDIILMDCMMPVMDGFEATKEIRAYEKNSGLPKTPIIALTASVVDDDIQ 565
Query: 115 AFMQAGLDLCHTKPLSVDKIL 135
+G+D KP+ +K+L
Sbjct: 566 RCYDSGMDAYVPKPVRKEKLL 586
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 16/127 (12%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF ++A NG EAV++F+ ++ ++ +D MPVM+G EA
Sbjct: 313 LVVDDNTVNQKIAGLHVAKAGFTFDLAANGLEAVEMFKKN-QYSLILMDCMMPVMDGFEA 371
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI-------- 134
T++IR + +KI I+ +T+ + + + G+D KP + +
Sbjct: 372 TQKIRQLEHEQNHSVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKANILKEKLAKAT 431
Query: 135 -LPLMED 140
+P++ED
Sbjct: 432 AVPIVED 438
>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
DG-6]
gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
DG6]
Length = 1010
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R LV D+ I TI S L S G+ V VA NG+EA+D A+ +++ +D +MPVM+
Sbjct: 892 RRILLVEDNTVNILTI-SDYLHSRGYTVAVANNGQEALDSIEQ-AQPELILMDIQMPVMD 949
Query: 85 GIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
GIEATR +R+M +I I+ +T+L +RE + AG + TKP+S+ ++ ++E+++
Sbjct: 950 GIEATRRLRAMPAYSEIPIIALTALAMPGDRERCLAAGANAYLTKPISLRHLVQMIEEMV 1009
>gi|416530291|ref|ZP_11744857.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416532901|ref|ZP_11745910.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416554279|ref|ZP_11758187.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416567030|ref|ZP_11764157.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363551036|gb|EHL35357.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363561564|gb|EHL45680.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363568854|gb|EHL52820.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363579380|gb|EHL63171.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 948
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSAVPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|333922683|ref|YP_004496263.1| response regulator receiver protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333748244|gb|AEF93351.1| response regulator receiver protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 135
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD +R + + +K G + A+NG EAV+ RS K D+VF+D MP+MNG+EA
Sbjct: 8 LIVDDQVGVRYLLEILVKESGHRAHTAQNGVEAVEKVRS-IKPDLVFMDVRMPIMNGLEA 66
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+I+ + + ++V +T+ ++E +Q G C +KP V++I ++E+ N
Sbjct: 67 LGKIKMIAPRTQVVMMTAYSAEDTATIALQKGALKCMSKPFDVEEIKEILENFAWN 122
>gi|407685282|ref|YP_006800456.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
gi|407246893|gb|AFT76079.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
Length = 702
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 19 PSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV----DLFRSGAKFDI 73
PS + L F AL+V+D+ + + LK +G ++AENG+EAV D + + + I
Sbjct: 556 PSKQELSAFKALIVEDNEINQLVIKEQLKEIGITADLAENGEEAVEKVQDALKGKSPYTI 615
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLS 130
+ +D MPVM+G+EAT+ IRSMG K + + + +L + A ++E +++G+D +KP+
Sbjct: 616 ILMDCHMPVMDGLEATKLIRSMGDKARDIPIIALTANALTGDKEKCLKSGMDDFISKPVG 675
Query: 131 VDKI 134
V ++
Sbjct: 676 VSRL 679
>gi|386829452|ref|ZP_10116559.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Beggiatoa alba B18LD]
gi|386430336|gb|EIJ44164.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Beggiatoa alba B18LD]
Length = 407
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+VDD R + LK LG +V A NGKEAV+ S +D+V +D MPVM+G
Sbjct: 10 LSVLLVDDTAVNRLVAGSILKELGCQVAEATNGKEAVEAVISDTDYDLVLMDINMPVMSG 69
Query: 86 IEATREIRSMGIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
+EA IR++ V +L S+AER+ G D KP++VD + L++
Sbjct: 70 LEAIHVIRTVESSDSHTTVVALTASDAERQQLNNVGFDDILPKPVTVDNLTTLLQ 124
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
ML ++++ A + S N+ L+V+D+ + + L +LG++ +V NG EA
Sbjct: 139 MLAPASATARVASTSVDKSHYNI----LLVEDNQVNCIVATNMLNALGYQTDVVYNGCEA 194
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQA 119
V + ++D++ +D MP M+G EAT+ IR I+ VT+ S + + Q
Sbjct: 195 VTAC-ANKQYDLLLMDIRMPTMDGTEATQLIREYPNYADTPIIAVTANTSATDLILYKQV 253
Query: 120 GLDLCHTKPLSVDKI 134
G++ C KPL+++ +
Sbjct: 254 GMNECLPKPLTIETL 268
>gi|350563582|ref|ZP_08932403.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
gi|349778717|gb|EGZ33068.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
Length = 932
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 3 LGEGESSSKKAKIME-NPSAKNLRL--FALVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
L E ++ K +M+ N S +++R L+V+D+ + + + LK G V++AENG+
Sbjct: 643 LCEPAAAVKPTSLMQTNASTEDMRFKGIVLLVEDNEINQIVAAEQLKKAGLVVDLAENGQ 702
Query: 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119
AV+ ++ A FD++ +D +MPVM G EATR+IR+ K+ I+ +T+ +RE +
Sbjct: 703 IAVEKAQNQA-FDLILMDIQMPVMGGYEATRKIRAFNAKVPIIALTAAAMIEDREKALAV 761
Query: 120 GLDLCHTKPLSVDKILPLMEDLMK 143
G+ +KPL+ +++ ++ +K
Sbjct: 762 GMQDHLSKPLNTAELISVLNHYLK 785
>gi|401880755|gb|EJT45070.1| two-component sensor molecule [Trichosporon asahii var. asahii CBS
2479]
Length = 1230
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK---FDIVFIDKEMPVMN 84
ALVVDDD R + S L LG V +NGK+AVDL A FDIVF+D +M +M
Sbjct: 1101 ALVVDDDSLTRRLMSRMLSRLGHMVTTVDNGKKAVDLILENAADNPFDIVFLDNQMLIMT 1160
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
G+EA +R +G +VG T +++ ++ +G + KP+
Sbjct: 1161 GVEAVAALRQVGNDTYVVGCTGNALREDQDEYLSSGANAIIAKPV 1205
>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1666
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S L G V++A NG+ AVD ++G +D++ +D +MPVM+G+ A
Sbjct: 1347 LLVEDNELNQEVASEILGDAGLVVDIAANGQIAVDKAKTG-HYDLILMDMQMPVMDGVTA 1405
Query: 89 TREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
TREIR+MG + + I+ +T+ +A+RE ++AG++ KP+ D + M
Sbjct: 1406 TREIRAMGFQDLPIIAMTANAMQADREKCLEAGMNDHIAKPIDPDSMFATM 1456
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
+G+G+ +A ++ P R+ LVVDD+ R + L S+ F+V+ E G A+
Sbjct: 1179 MGKGKP---RAPLLPEPELVGRRM--LVVDDNENARAVLVDMLSSMSFEVDSVEGGAAAI 1233
Query: 63 DLFRSG---AKFDIVFIDKEMPVMNGIEATREIRSM 95
D R +++VF+D +MP M+G+E I +
Sbjct: 1234 DAIREAMLDQPYEVVFLDWQMPGMDGLEVAERIHDI 1269
>gi|410457904|ref|ZP_11311670.1| GAF sensor hybrid histidine kinase [Bacillus azotoformans LMG 9581]
gi|409932024|gb|EKN68994.1| GAF sensor hybrid histidine kinase [Bacillus azotoformans LMG 9581]
Length = 916
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 6/114 (5%)
Query: 29 LVVDDDCFIRTIHSM--ALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+VDDD +R I S+ AL++ VE AENG+EA+++ + + D+V +D MPVMNG
Sbjct: 799 LLVDDD--MRNIFSLTTALETNKMIVEFAENGQEAIEILKKQSDIDLVLMDIMMPVMNGY 856
Query: 87 EATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
EA +EIR M +++ I+ +T+ + +RE + AG +KP+++D++L L+
Sbjct: 857 EAIQEIRKMEGFLELPIIALTAKAMKNDREKCLDAGASDYISKPVNLDQLLSLI 910
>gi|357119147|ref|XP_003561307.1| PREDICTED: LOW QUALITY PROTEIN: autoinducer 2 sensor
kinase/phosphatase luxQ-like [Brachypodium distachyon]
Length = 126
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 29 LVVDDDCFIRT-IHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
++V +DC I++ I + L+ ENGKEAVDL G KFDI+ DK MP+M G E
Sbjct: 12 VLVIEDCEIQSKILLIMLQMFNCHTTRVENGKEAVDLCLEGKKFDIILCDKWMPIMKGPE 71
Query: 88 ATREIRSM-GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
A +IRSM ++KIVGV++ +S+A E F+ AG D+ KP+ ++ + +++++
Sbjct: 72 AVAKIRSMRASEVKIVGVSA-DSDATEE-FLSAGADMFVAKPMKLEVLEAIIQEV 124
>gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
Length = 961
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 923 LSKPVTLDAL 932
>gi|67538252|ref|XP_662900.1| hypothetical protein AN5296.2 [Aspergillus nidulans FGSC A4]
gi|238054329|sp|Q9P896.2|TCSA_EMENI RecName: Full=Two-component system protein A
gi|40743266|gb|EAA62456.1| hypothetical protein AN5296.2 [Aspergillus nidulans FGSC A4]
gi|259485266|tpe|CBF82150.1| TPA: Two-component system protein A (EC 2.7.13.3)
[Source:UniProtKB/Swiss-Prot;Acc:Q9P896] [Aspergillus
nidulans FGSC A4]
Length = 682
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPV 82
R L+V+D+ T+ L ++GF +++ A NG EAV + R +DI+ +D MPV
Sbjct: 561 RKHVLLVEDNIVNHTVMLKLLHTIGFQRIDGAWNGAEAVRMVRQKPLSYDIILMDVSMPV 620
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
++G+ AT +IR MG+ + I+ +T + + E ++ G+D C KP+ D++L ++
Sbjct: 621 LDGLAATEQIRDMGLTMPIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLLRVL 676
>gi|452978366|gb|EME78130.1| hypothetical protein MYCFIDRAFT_94454, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1117
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-------AKFDIVFIDK 78
L L+VDD+ R + M +K F AENG+EA+DL+RS FD V +D
Sbjct: 993 LHLLLVDDNKINRQLLVMFMKRCKFTYLEAENGQEALDLYRSSISDLPNHKHFDFVLMDI 1052
Query: 79 EMPVMNGIEATREIRSM----GIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
MP+M+G+EATR IR G+K + ++ +T L SE RE +G+D+ KP+ +
Sbjct: 1053 SMPIMDGMEATRRIRDFEKENGLKRVTVIALTGLASEKAREEAETSGIDVFLPKPVKFAE 1112
Query: 134 ILPLM 138
+ L+
Sbjct: 1113 LRKLL 1117
>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
domain-containing protein [Geobacter bemidjiensis Bem]
gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter bemidjiensis Bem]
Length = 818
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+ + LR L+V+D+ + + L+SLG +V+VAENG A+ + GA FD++F+D
Sbjct: 557 PTLRRLRQ-VLLVEDNVVNQEVGRGLLESLGCRVKVAENGLAALKELQRGA-FDLIFMDC 614
Query: 79 EMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+MPV++G+EATR IR ++ I+ +T+ + +REA + AG D +KP S +++
Sbjct: 615 QMPVLDGLEATRRIRQREEGSSARVPIIALTAYAMKGDREACLAAGADDYLSKPFSREQL 674
Query: 135 LPLME 139
+E
Sbjct: 675 SKSIE 679
>gi|11499482|ref|NP_070723.1| response regulator [Archaeoglobus fulgidus DSM 4304]
gi|2648641|gb|AAB89351.1| response regulator [Archaeoglobus fulgidus DSM 4304]
Length = 117
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 74/117 (63%), Gaps = 4/117 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
+VVDD+ +R I + LK +KV A NG+EAV+L+R + DIV +D MP+MNGIEA
Sbjct: 5 MVVDDEIAMREILKIMLKD--YKVIEASNGREAVELYRE-ERPDIVLMDVMMPLMNGIEA 61
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
T EI+ + KIV +T+ S ++ E ++AG D KP + +++ L++ ++ ++
Sbjct: 62 TSEIKKIDPDAKIVAITAYAS-SKGEKVIEAGADYILKKPFTRKEVVELIKRILNSS 117
>gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|378958740|ref|YP_005216226.1| Sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|17433762|sp|Q56128.2|RCSC_SALTI RecName: Full=Sensor protein RcsC; AltName: Full=Capsular synthesis
regulator component C
gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|374352612|gb|AEZ44373.1| Sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 948
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 923 LSKPVTLDAL 932
>gi|374585041|ref|ZP_09658133.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
gi|373873902|gb|EHQ05896.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
Length = 967
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 14 KIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKF 71
K +E P+ + L+ L+V+D+ R I L +G V+ A NG EA+ L SG ++
Sbjct: 710 KTVEAPTGRTLQGRHVLIVEDNEINRQILDELLCDMGLFVDTATNGLEAIALVEESGKRY 769
Query: 72 DIVFIDKEMPVMNGIEATREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+ VF+D MP+M+G+EATR +R ++ ++ +T+ +E ER+ + AG++ KP
Sbjct: 770 EAVFMDLRMPLMDGLEATRRLRKEHTADRLPVIAITATANEEERQECLDAGMNAVVMKPF 829
Query: 130 SVDKILPLMEDLM 142
+ +I ++E ++
Sbjct: 830 DMAEIRSILERVL 842
>gi|33466070|gb|AAQ19474.1| histidine kinase G2 [Emericella nidulans]
gi|259480694|tpe|CBF73574.1| TPA: Histidine kinase G2 [Source:UniProtKB/TrEMBL;Acc:Q6WJ26]
[Aspergillus nidulans FGSC A4]
Length = 659
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L V+D+ + + L+ GF+V A NG+EA+ L+ S KFD + +D+EMPVM+G A
Sbjct: 540 LFVEDNVINQKVVCRKLRVSGFEVTTANNGQEALGLWDSD-KFDCILMDQEMPVMDGNTA 598
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TREIR+M G I I+GVT+ + ++ + AG+D KP + ++ + D++
Sbjct: 599 TREIRAMEKEKGSHIPILGVTANVRQDQQADMLNAGMDGIIHKPYKMHELCEKIHDML 656
>gi|67901916|ref|XP_681214.1| hypothetical protein AN7945.2 [Aspergillus nidulans FGSC A4]
gi|40740409|gb|EAA59599.1| hypothetical protein AN7945.2 [Aspergillus nidulans FGSC A4]
Length = 676
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L V+D+ + + L+ GF+V A NG+EA+ L+ S KFD + +D+EMPVM+G A
Sbjct: 557 LFVEDNVINQKVVCRKLRVSGFEVTTANNGQEALGLWDSD-KFDCILMDQEMPVMDGNTA 615
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TREIR+M G I I+GVT+ + ++ + AG+D KP + ++ + D++
Sbjct: 616 TREIRAMEKEKGSHIPILGVTANVRQDQQADMLNAGMDGIIHKPYKMHELCEKIHDML 673
>gi|337281043|ref|YP_004620515.1| histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334732120|gb|AEG94496.1| candidate histidine kinase, unorthodox [Ramlibacter tataouinensis
TTB310]
Length = 919
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + + + L+S G VEVAE+G+ A+DL + +D+VF+D +MPVM+G+ A
Sbjct: 665 LVVEDNEINQQVVTELLQSAGLVVEVAEHGRAALDLL-ACRDYDLVFMDMQMPVMDGLTA 723
Query: 89 TREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TREIR + K+ +V VT+ E R ++AG++ KP+ D++
Sbjct: 724 TREIRKIERLRKLPVVAVTASVMEQNRRDCLEAGMNAFLAKPIEPDQV 771
>gi|395235309|ref|ZP_10413524.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter sp. Ag1]
gi|394730205|gb|EJF30097.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter sp. Ag1]
Length = 951
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
S +N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D
Sbjct: 820 SERNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGIDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 MPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 933
>gi|414069629|ref|ZP_11405621.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. Bsw20308]
gi|410807859|gb|EKS13833.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. Bsw20308]
Length = 1074
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
Query: 8 SSSKKAKIMENPSAKNLRLF----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
+S KA I P NL F AL+VDD+ I S LK L + A NG+EAV+
Sbjct: 744 ASESKATI--TPKPDNLIKFTGVKALIVDDNPLNIEITSAMLKKLDLDIVTAMNGQEAVE 801
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
++ FDI+F+D +MPVM+GI AT +IR G + IV +T+ +++A + AG++
Sbjct: 802 CVKNNI-FDIIFMDIQMPVMDGILATSKIRENGETLPIVALTAAVLPEDKKAAIDAGMND 860
Query: 124 CHTKPLSVDKILPLME 139
TKPL D + +E
Sbjct: 861 FLTKPLIFDMLFQSLE 876
>gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 1324
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+V+D+ R S L++ G V VAENG+ A+D + + + D+V +D +MPVM+G
Sbjct: 1073 LSILLVEDNRVNRVFASDLLENRGHTVAVAENGRAALD-YLAAHQVDVVLMDIQMPVMDG 1131
Query: 86 IEATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+ ATR IR+ + + ++G+++ + ERE F+ AGLD KP+ V ++ D+
Sbjct: 1132 LAATRAIRAGHPPIDPDLPVIGLSAYAMDQERERFLAAGLDDYIIKPIDVGAFFAVVRDV 1191
Query: 142 M 142
+
Sbjct: 1192 L 1192
>gi|359413753|ref|ZP_09206218.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172637|gb|EHJ00812.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 983
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 75/116 (64%), Gaps = 3/116 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV D++ IR ++ LK G K ++A NG EAV + + K+DI+F+D +MP+M+G EA
Sbjct: 733 LVEDNEINIRLFINI-LKVRGLKCDIALNGVEAVAAYENN-KYDIIFMDCQMPMMDGYEA 790
Query: 89 TREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T++IR+ K I I+ +T+ + +RE ++AG+D TKP ++++ +++ +K
Sbjct: 791 TKKIRNTESKHIPIIAMTAHAMQGDREKCLEAGMDDYLTKPFGFNQVIEMLQKYVK 846
>gi|149377882|ref|ZP_01895611.1| Response regulator containing a CheY-like receiver domain and a
GGDEF domain [Marinobacter algicola DG893]
gi|149357824|gb|EDM46317.1| Response regulator containing a CheY-like receiver domain and a
GGDEF domain [Marinobacter algicola DG893]
Length = 588
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
M++P +N L L+ DD R I L+ LG +VE AENG EAV++FR A DIV
Sbjct: 1 MDDPLPENRPLRILIADDSDSDRLILKTLLRRLGHEVEDAENGLEAVNIFRKSAP-DIVL 59
Query: 76 IDKEMPVMNGIEATREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+D MPVM+G+EA R+I+ + + + ++ +TSL+ ++AG D TKP
Sbjct: 60 LDALMPVMDGMEAARQIKVLAGEQLVPLIFLTSLSDAGALARCLEAGGDDFLTKP 114
>gi|452962752|gb|EME67859.1| sensor protein barA [Magnetospirillum sp. SO-1]
Length = 1606
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+ G VE+AENG+ AVD +GA +D+V +D +MPVM+G+ A
Sbjct: 1360 LLVEDNELNQEVAGEILRDAGLVVEIAENGRIAVDKVMAGA-YDMVLMDMQMPVMDGVTA 1418
Query: 89 TREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TREIR +G + I+ +T+ +A++E ++AG++ KP+ D +
Sbjct: 1419 TREIRRLGFGDLPIIAMTANAMQADKEKCLEAGMNDHLAKPIDPDAMF 1466
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
LG+G+ +A ++ + R+ LVVDD+ R + + L ++ F+V+ ++G+ A+
Sbjct: 1192 LGKGKP---RAPLLPEAELRGRRM--LVVDDNENARAVLAEMLGAMSFEVDAVDSGEAAI 1246
Query: 63 DLFRSGA---KFDIVFIDKEMPVMNGIEATREIRSM 95
R +++VF+D +MP ++G+E + ++
Sbjct: 1247 AAIRDAVLDRPYEVVFLDWQMPDLDGLEVAERLHAI 1282
>gi|340000018|ref|YP_004730901.1| sensor protein RcsC [Salmonella bongori NCTC 12419]
gi|339513379|emb|CCC31129.1| sensor protein RcsC [Salmonella bongori NCTC 12419]
Length = 948
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S ++ + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSTALPAVDKTAYSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|437643429|ref|ZP_20808416.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435274612|gb|ELO52713.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
Length = 194
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 50 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 109
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 110 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 168
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 169 LSKPVTLD 176
>gi|387888623|ref|YP_006318921.1| capsular synthesis regulator component C RcsC [Escherichia blattae
DSM 4481]
gi|414592690|ref|ZP_11442339.1| colanic acid biosynthesis two-component histidine kinase RcsC
[Escherichia blattae NBRC 105725]
gi|386923456|gb|AFJ46410.1| capsular synthesis regulator component C RcsC [Escherichia blattae
DSM 4481]
gi|403196171|dbj|GAB79991.1| colanic acid biosynthesis two-component histidine kinase RcsC
[Escherichia blattae NBRC 105725]
Length = 949
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 8 SSSKKAKI--MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
S+S +A++ + N N + LVVDD R + + L SLG++ + A++G +A+++
Sbjct: 805 STSGEAELPAVVNAPECNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAQDGVDALNVL 864
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S DIV D MP M+G T+ IR +G+ + ++GVT+ ER+ + +G+D C
Sbjct: 865 -SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEERQRCLASGMDSCL 923
Query: 126 TKPLSVDKI 134
+KP+++D I
Sbjct: 924 SKPVTLDVI 932
>gi|213025912|ref|ZP_03340359.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 252
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 108 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 167
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 168 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 226
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 227 LSKPVTLDAL 236
>gi|213419730|ref|ZP_03352796.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 458
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 314 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 373
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 374 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 432
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 433 LSKPVTLDAL 442
>gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTANSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|320104791|ref|YP_004180382.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
gi|319752073|gb|ADV63833.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
Length = 973
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D IR + L+ LG VE ENG+ AV+ +G FD++ +D +MP+ +G EA
Sbjct: 650 LLAEDTPEIRQVILFHLRRLGLTVEAVENGELAVEKALAGPPFDLILMDLQMPITDGYEA 709
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T +R+ G + IV +T+ ERE ++AG KP+ +++ L LM +K
Sbjct: 710 TARLRASGFEGPIVALTAHTMTGERERCLRAGFTDHLGKPIDLNEFLTLMNRYLK 764
>gi|429851789|gb|ELA26952.1| histidine kinase m232p [Colletotrichum gloeosporioides Nara gc5]
Length = 1062
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 18 NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFI 76
N S + LF L+VDD+ I S +K LG K A +GK+AV+ FR G ++ +F+
Sbjct: 931 NDSDGDPYLF-LLVDDNVINLKILSEYMKKLGHKYTTAMDGKQAVEAFRKGEGRYKCIFM 989
Query: 77 DKEMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D MPVM+G EATREIR + ++ +T L S + +E +G+DL TKP+ +
Sbjct: 990 DISMPVMDGFEATREIRVFETRKNMPRCQVFALTGLASASAQEEAFASGIDLFLTKPVKL 1049
Query: 132 DKILPLME 139
++ +++
Sbjct: 1050 KELSKILQ 1057
>gi|323495069|ref|ZP_08100158.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546]
gi|323310726|gb|EGA63901.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546]
Length = 1039
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 5/109 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + + + L+ LG + +AENGKEA+++ A +DIV +D +MPVM+G EA
Sbjct: 918 LVVEDNRVNQIVITGILQKLGLQSTIAENGKEAIEVLSGDANYDIVLMDCQMPVMDGYEA 977
Query: 89 TREIRS--MGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T IRS G ++K I+ +T+ E++R A +AG++ TKP++ D
Sbjct: 978 THRIRSGASGDQVKNIPIIALTANAMESDRNACKKAGMNDFLTKPVNRD 1026
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 71 FDIVFIDKEMPVMNGIEATREIRS-MGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
FDI F+D +MP ++GIE +++ + + K IK++ +TS+ S +++ F + G KP
Sbjct: 809 FDIAFVDMQMPDVDGIELSKKFQQHLATKTIKLIMMTSIESISQQNEFQKLGFSGYFVKP 868
>gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium
HdN1]
gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium
HdN1]
Length = 913
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 1 MMLGEGESSSKKAKIMENP--SAKNLRLFALVVDDDCFIRTIHSMALKSLG-FKVEVAEN 57
M L E+ +A ++++P K RL LVV+D+ R + LKSLG +V++ E+
Sbjct: 758 MPLLRAEAKDVRANVLDDPEHQGKLERLRVLVVEDNAVNRQVAKGMLKSLGVMQVDMVED 817
Query: 58 GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK----IVGVTSLNSEAER 113
G AVD + G ++D+V +D +MPVM+G +AT+ IR + K++ +V +T+ ER
Sbjct: 818 GSLAVDAVKIG-QYDVVLMDVQMPVMDGYQATKCIRELEDKVRARVPVVALTASAGAEER 876
Query: 114 EAFMQAGLDLCHTKPL 129
+ G+D TKP+
Sbjct: 877 NRCAENGMDDFLTKPM 892
>gi|375124229|ref|ZP_09769393.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445128906|ref|ZP_21380517.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444854561|gb|ELX79622.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|437763442|ref|ZP_20834911.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435308536|gb|ELO83469.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
Length = 952
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 808 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 867
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 868 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 926
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 927 LSKPVTLD 934
>gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418763717|ref|ZP_13319823.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418765721|ref|ZP_13321804.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418770124|ref|ZP_13326149.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418776368|ref|ZP_13332314.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781809|ref|ZP_13337685.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418785815|ref|ZP_13341642.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|419789097|ref|ZP_14314779.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419791421|ref|ZP_14317074.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392615601|gb|EIW98037.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392620641|gb|EIX03008.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392731410|gb|EIZ88637.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392738327|gb|EIZ95473.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392740234|gb|EIZ97360.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392746046|gb|EJA03065.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392746079|gb|EJA03097.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392751056|gb|EJA08013.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|437189643|ref|ZP_20710648.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435233016|gb|ELO14074.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
Length = 863
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 719 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 778
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 779 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 837
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 838 LSKPVTLD 845
>gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 964
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L +DD R + L LG +V AENG A+DL RS FD V +D MPV++
Sbjct: 694 RLRVLCAEDDRANRLVAGEFLIDLGHEVTFAENGALALDLLRS-KPFDFVLMDGRMPVLD 752
Query: 85 GIEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
G+ ATR +R ++ KI + ++ SE R+ F+ G+D C TKPL
Sbjct: 753 GVSATRMLRDPANGALDPKIYVCAASANASEVSRKEFLDNGMDDCITKPL 802
>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 1046
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D+ + + L LG +V +A NG+EA+ L R +D++F+D +MPVM GI+A
Sbjct: 762 LVAEDNVINQKLILNVLNKLGLQVTLANNGEEALHL-RQKNNYDMIFMDVQMPVMGGIDA 820
Query: 89 TREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T+EI + K I IV +T+ + ++E +++AG+D +KPL ++ + L+E +
Sbjct: 821 TKEILTYEEKNRKHHIPIVALTANALQGDKEKYIKAGMDDYLSKPLVLEHLTQLLEKYFE 880
Query: 144 N 144
N
Sbjct: 881 N 881
>gi|418803225|ref|ZP_13358849.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|392775835|gb|EJA32526.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|418856576|ref|ZP_13411218.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|392819085|gb|EJA74958.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|345300120|ref|YP_004829478.1| integral membrane sensor hybrid histidine kinase [Enterobacter
asburiae LF7a]
gi|345094057|gb|AEN65693.1| integral membrane sensor hybrid histidine kinase [Enterobacter
asburiae LF7a]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ +++N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 ESLASENDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|438067229|ref|ZP_20856981.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|435312212|gb|ELO86182.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
Length = 825
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 681 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 740
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 741 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 799
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 800 LSKPVTLD 807
>gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|437820527|ref|ZP_20843232.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|440761650|ref|ZP_20940721.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|440767199|ref|ZP_20946183.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440773902|ref|ZP_20952791.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|435307075|gb|ELO82268.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|436414265|gb|ELP12196.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|436420995|gb|ELP18847.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436424632|gb|ELP22400.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|421357522|ref|ZP_15807833.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421361682|ref|ZP_15811941.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421367252|ref|ZP_15817446.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421371408|ref|ZP_15821567.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421375482|ref|ZP_15825594.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421379375|ref|ZP_15829444.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384404|ref|ZP_15834429.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421388506|ref|ZP_15838496.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421392949|ref|ZP_15842898.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421397752|ref|ZP_15847664.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421401989|ref|ZP_15851854.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407014|ref|ZP_15856823.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421411535|ref|ZP_15861300.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421418367|ref|ZP_15868069.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421419794|ref|ZP_15869478.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421424546|ref|ZP_15874188.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421430557|ref|ZP_15880144.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421434003|ref|ZP_15883554.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421441631|ref|ZP_15891097.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421444369|ref|ZP_15893800.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421447220|ref|ZP_15896622.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436795655|ref|ZP_20522428.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436808422|ref|ZP_20527846.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436817400|ref|ZP_20534482.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436830643|ref|ZP_20535385.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849181|ref|ZP_20540350.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856777|ref|ZP_20545699.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436862604|ref|ZP_20549287.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436872263|ref|ZP_20555285.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436880058|ref|ZP_20559892.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436889123|ref|ZP_20565044.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436897290|ref|ZP_20569937.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436900884|ref|ZP_20571808.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909659|ref|ZP_20576383.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436917411|ref|ZP_20580945.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436927990|ref|ZP_20587484.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436933941|ref|ZP_20590096.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436942326|ref|ZP_20595309.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436948629|ref|ZP_20598842.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436957267|ref|ZP_20602935.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436968371|ref|ZP_20607780.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436986318|ref|ZP_20615408.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436990892|ref|ZP_20617189.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437004215|ref|ZP_20621944.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437014522|ref|ZP_20625600.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437026885|ref|ZP_20629896.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437045101|ref|ZP_20637536.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437048488|ref|ZP_20639527.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437060926|ref|ZP_20646753.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437067988|ref|ZP_20650620.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437075309|ref|ZP_20653763.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437080563|ref|ZP_20657167.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437091078|ref|ZP_20663069.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437102682|ref|ZP_20666710.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437119896|ref|ZP_20671114.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437127896|ref|ZP_20674986.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437135858|ref|ZP_20679504.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437143361|ref|ZP_20684228.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437154831|ref|ZP_20691291.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437157955|ref|ZP_20692909.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437167877|ref|ZP_20699075.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437173998|ref|ZP_20702069.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437183688|ref|ZP_20707843.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437258358|ref|ZP_20716395.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437266847|ref|ZP_20720931.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437282297|ref|ZP_20729172.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437298026|ref|ZP_20732935.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437313670|ref|ZP_20736838.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437324700|ref|ZP_20739812.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437336954|ref|ZP_20743163.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437367466|ref|ZP_20748870.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437408590|ref|ZP_20752475.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437434397|ref|ZP_20756336.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437459486|ref|ZP_20761165.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437472672|ref|ZP_20765676.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437497524|ref|ZP_20773512.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437515023|ref|ZP_20777906.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437532387|ref|ZP_20780894.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437549335|ref|ZP_20783331.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437573243|ref|ZP_20789519.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437591548|ref|ZP_20794828.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437600865|ref|ZP_20797401.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437615330|ref|ZP_20802152.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437660397|ref|ZP_20812469.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437700527|ref|ZP_20823885.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437705240|ref|ZP_20824913.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437804752|ref|ZP_20839080.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437903163|ref|ZP_20849939.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438090506|ref|ZP_20860602.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438111591|ref|ZP_20868392.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|445177204|ref|ZP_21397693.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445191006|ref|ZP_21399729.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445233941|ref|ZP_21406553.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445238132|ref|ZP_21407232.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445335581|ref|ZP_21415476.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445344831|ref|ZP_21417867.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445363990|ref|ZP_21424829.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|395988064|gb|EJH97225.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395991584|gb|EJI00708.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395992685|gb|EJI01797.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|396004085|gb|EJI13069.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396004397|gb|EJI13379.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396006674|gb|EJI15636.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396019392|gb|EJI28248.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396019849|gb|EJI28700.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020417|gb|EJI29262.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396031577|gb|EJI40303.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396033199|gb|EJI41914.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396033516|gb|EJI42223.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396038368|gb|EJI47007.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396045901|gb|EJI54492.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396047205|gb|EJI55781.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396055605|gb|EJI64090.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396060087|gb|EJI68534.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396060988|gb|EJI69424.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396063386|gb|EJI71780.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396067854|gb|EJI76211.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396075053|gb|EJI83329.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|434962275|gb|ELL55496.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434967440|gb|ELL60256.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434971849|gb|ELL64352.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434983385|gb|ELL75181.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434989036|gb|ELL80609.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434990788|gb|ELL82318.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434998853|gb|ELL90067.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000182|gb|ELL91330.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435006362|gb|ELL97263.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435008149|gb|ELL98975.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435014417|gb|ELM04994.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435021465|gb|ELM11833.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435029083|gb|ELM19143.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435031859|gb|ELM21814.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435035032|gb|ELM24880.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435042169|gb|ELM31901.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435044347|gb|ELM34044.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435055500|gb|ELM44912.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435056922|gb|ELM46292.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435060683|gb|ELM49930.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435061544|gb|ELM50767.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435069389|gb|ELM58391.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435072957|gb|ELM61862.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435080329|gb|ELM69010.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435085050|gb|ELM73605.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435086031|gb|ELM74576.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435090206|gb|ELM78610.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435095595|gb|ELM83890.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435098921|gb|ELM87150.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435106116|gb|ELM94135.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435113226|gb|ELN01075.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435113394|gb|ELN01242.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435122773|gb|ELN10286.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435128495|gb|ELN15832.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435129479|gb|ELN16775.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435137647|gb|ELN24687.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435138837|gb|ELN25852.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435140215|gb|ELN27178.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435150855|gb|ELN37519.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435153135|gb|ELN39750.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435158230|gb|ELN44641.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435162225|gb|ELN48411.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435166687|gb|ELN52660.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167859|gb|ELN53714.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435176700|gb|ELN62067.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435178902|gb|ELN64077.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435181901|gb|ELN66935.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435193813|gb|ELN78286.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435197303|gb|ELN81595.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435204843|gb|ELN88500.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435207816|gb|ELN91248.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435214079|gb|ELN96925.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435222286|gb|ELO04408.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435225181|gb|ELO07091.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435225973|gb|ELO07571.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435229275|gb|ELO10653.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243101|gb|ELO23397.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435246831|gb|ELO26820.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435246958|gb|ELO26946.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435254424|gb|ELO33819.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435261990|gb|ELO41134.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435262661|gb|ELO41746.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435268964|gb|ELO47517.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435273761|gb|ELO51986.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435292607|gb|ELO69363.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435302555|gb|ELO78513.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435316360|gb|ELO89515.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435320450|gb|ELO93084.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435330827|gb|ELP02068.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444856486|gb|ELX81516.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444860956|gb|ELX85854.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444868246|gb|ELX92891.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444874470|gb|ELX98716.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444879847|gb|ELY03937.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444883389|gb|ELY07275.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|444891469|gb|ELY14718.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
Length = 1058
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ EVAENG+ AV++F+ KFD++ +D MP+M+G EA
Sbjct: 940 LLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQKDGKFDVILMDCMMPIMDGFEA 999
Query: 89 TREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+R+IR S G+ K I+ +T+ + + + +G+D KP+ +K+L +E M
Sbjct: 1000 SRQIRAYEASKGLAKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLYQIEQAM 1058
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF +VA NG+EAV+ F+ ++ ++ +D MPVM+G EA
Sbjct: 777 LVVDDNTVNQKIAGLHVTKAGFDFDVAVNGQEAVEQFQQN-QYSLILMDCMMPVMDGFEA 835
Query: 89 TREIRSMGIK------IKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T+ IR + +K I I+ +T+ + + + G+D KP
Sbjct: 836 TQIIRQIEVKEKRAFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 882
>gi|221635617|ref|YP_002523493.1| transcriptional regulatory protein ResD [Thermomicrobium roseum DSM
5159]
gi|221157956|gb|ACM07074.1| transcriptional regulatory protein ResD [Thermomicrobium roseum DSM
5159]
Length = 126
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L L+ DD +R +H +L+ +G++VE +E NG+EA+ LF G KFD+V +D MP M
Sbjct: 2 LKVLIADDSKMMRVMHVRSLRQVGYEVEASEANNGEEALALFEPG-KFDLVIVDWNMPGM 60
Query: 84 NGIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
+GIE R R G + I+ +TS ++E + +AG+D TKP++ + I +E
Sbjct: 61 DGIEFVRAAREKEQGAGKRTPILMITSQSTEEQMLKAKEAGVDNLLTKPVTPEAIGAALE 120
Query: 140 DLM 142
L+
Sbjct: 121 MLL 123
>gi|119503084|ref|ZP_01625169.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
gi|119461430|gb|EAW42520.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
Length = 1448
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
SSK A+ + + L+V+D+ + + LKS+G + +AENG EAV LFR
Sbjct: 1177 SSKAAQAAAPTPSLQINADVLIVEDNKVNQILVQEILKSMGLRSNLAENGLEAVTLFRR- 1235
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDL 123
+FD+V +D +MPVM+G EAT+ IR + + I+ +T+ E E + +G+D
Sbjct: 1236 QRFDLVLMDCQMPVMDGFEATKLIREIESERDYERTPIIALTAAARAEEYEQALSSGMDE 1295
Query: 124 CHTKPLSVDKI 134
TKP +V ++
Sbjct: 1296 FMTKPFNVAQL 1306
>gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c]
gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c]
Length = 662
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 12 KAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRS 67
K M+ N LVVDD IR + +++ G KVE NG EA+D
Sbjct: 387 KPSTMKEVKTLNYEGRVLVVDDVNDIRMLVGHMVQNSGLKVEYGRNGLEALDKVTDAIND 446
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
G +D+V ID MPVMNG EA ++IRS GI +V +T+ + R+ + G K
Sbjct: 447 GDPYDLVLIDIHMPVMNGSEAIKQIRSSGIHFPVVAMTAATMKGVRDQLISQGFTNVLEK 506
Query: 128 PLSVDKILPLME 139
P++ D +L +++
Sbjct: 507 PINHDALLKVLD 518
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R L+V+DD I ++ L+SLG V VA +G+E +D+F + V +D +P +
Sbjct: 549 RQHFLLVEDDVDAADITALLLESLGIDVHVAHSGQECMDVFNQRNDWSKVLMDLNLPDAS 608
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
G+ +EI ++++V ++ E + ++ A + KP++ + L+ED
Sbjct: 609 GLNLAKEIHKTSPQLELVLLSG--EEPDAQSMADADITKFILKPINKKVLSDLVED 662
>gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375115174|ref|ZP_09760344.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|418787815|ref|ZP_13343615.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418794832|ref|ZP_13350548.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418800103|ref|ZP_13355767.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418805234|ref|ZP_13360822.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418813961|ref|ZP_13369481.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418814445|ref|ZP_13369959.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418819410|ref|ZP_13374861.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418829330|ref|ZP_13384312.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418838541|ref|ZP_13393385.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418839241|ref|ZP_13394078.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418847218|ref|ZP_13401980.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418852190|ref|ZP_13406895.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418858694|ref|ZP_13413306.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418864999|ref|ZP_13419514.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418867264|ref|ZP_13421724.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with
RcsB, regulates colanic capsule biosynthesis [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|392760442|gb|EJA17279.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392762733|gb|EJA19547.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392765340|gb|EJA22128.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392772295|gb|EJA28996.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392784935|gb|EJA41516.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392794239|gb|EJA50662.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392794701|gb|EJA51093.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392796054|gb|EJA52404.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392804561|gb|EJA60718.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392808981|gb|EJA65028.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392812952|gb|EJA68927.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392815720|gb|EJA71656.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392829085|gb|EJA84766.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|392831952|gb|EJA87577.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392839684|gb|EJA95223.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|374982212|ref|ZP_09723534.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378445700|ref|YP_005233332.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378450979|ref|YP_005238338.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378700181|ref|YP_005182138.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378984833|ref|YP_005247988.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378989657|ref|YP_005252821.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379701502|ref|YP_005243230.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|386592081|ref|YP_006088481.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|419728403|ref|ZP_14255368.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419734287|ref|ZP_14261180.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419737824|ref|ZP_14264594.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419746298|ref|ZP_14272886.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419750325|ref|ZP_14276787.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421570299|ref|ZP_16015991.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421576260|ref|ZP_16021863.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421578115|ref|ZP_16023697.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421585538|ref|ZP_16031035.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|422026556|ref|ZP_16372939.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422031580|ref|ZP_16377738.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427551475|ref|ZP_18928230.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427568027|ref|ZP_18932951.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427588416|ref|ZP_18937746.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427611900|ref|ZP_18942607.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427635622|ref|ZP_18947503.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427656581|ref|ZP_18952269.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427661824|ref|ZP_18957177.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427671583|ref|ZP_18961993.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|20139412|sp|P58662.1|RCSC_SALTY RecName: Full=Sensor protein RcsC; AltName: Full=Capsular synthesis
regulator component C
gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with
RcsB [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|381297945|gb|EIC39028.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381299457|gb|EIC40529.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381302777|gb|EIC43807.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381303845|gb|EIC44859.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381307199|gb|EIC48062.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383799125|gb|AFH46207.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|402519058|gb|EJW26422.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402525155|gb|EJW32449.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402525692|gb|EJW32979.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402530014|gb|EJW37239.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414017348|gb|EKT01078.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414018253|gb|EKT01917.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414019363|gb|EKT02978.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414031866|gb|EKT14902.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414033004|gb|EKT15982.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414036285|gb|EKT19122.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414046380|gb|EKT28711.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414047320|gb|EKT29606.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414052127|gb|EKT34194.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414059052|gb|EKT40668.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|304309736|ref|YP_003809334.1| histidine kinase [gamma proteobacterium HdN1]
gi|301795469|emb|CBL43667.1| predicted histidine kinase [gamma proteobacterium HdN1]
Length = 658
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 12/127 (9%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKE 79
L+L LVV+D+ + + + LK +G VEVA NG+E VD + FD++ +D +
Sbjct: 509 LKLHILVVEDNKVNQMVINGYLKKMGCSVEVANNGQEGVDRLGDTTTNRPSFDLILMDCQ 568
Query: 80 MPVMNGIEATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
MPVM+G EATR IR++ + I+ VT+ E +RE +QAG++ +KP+ L
Sbjct: 569 MPVMDGFEATRRIRALPNPALAALPIIAVTANAMEGDRERCLQAGMNDYLSKPID----L 624
Query: 136 PLMEDLM 142
P++ ++
Sbjct: 625 PVLRSMI 631
>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 823
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+SLG +V+V E+G AV+ R ++D+VF+D +MPVM+G+EA
Sbjct: 566 LLVEDNPVNQEVGKGMLESLGCRVKVVEDGLAAVNEVRQN-RYDLVFMDCQMPVMDGLEA 624
Query: 89 TREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR IR+ G ++ ++ +T+ + +R A ++AG D +KP + D+I +M+
Sbjct: 625 TRRIRAREEGTGNRVPVIALTAYAMKGDRLACLEAGADEYLSKPFTRDQIAKIMQ 679
>gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|375002088|ref|ZP_09726428.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|416421238|ref|ZP_11689351.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416434722|ref|ZP_11697846.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416437826|ref|ZP_11699035.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416442723|ref|ZP_11702484.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416449940|ref|ZP_11707084.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416456092|ref|ZP_11711156.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416470374|ref|ZP_11718829.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416478764|ref|ZP_11721882.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416486130|ref|ZP_11725010.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416497024|ref|ZP_11729457.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416506956|ref|ZP_11735098.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416513923|ref|ZP_11738099.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416544106|ref|ZP_11752675.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416557135|ref|ZP_11759317.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416575201|ref|ZP_11768293.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416582576|ref|ZP_11772775.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416590220|ref|ZP_11777615.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596820|ref|ZP_11781635.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416604068|ref|ZP_11785929.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416611012|ref|ZP_11790505.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416617650|ref|ZP_11794276.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416630549|ref|ZP_11800798.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416638578|ref|ZP_11804047.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416649341|ref|ZP_11809814.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416665193|ref|ZP_11816518.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416674121|ref|ZP_11821189.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416690267|ref|ZP_11825809.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416703551|ref|ZP_11829647.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416711749|ref|ZP_11835529.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416715679|ref|ZP_11838318.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416722430|ref|ZP_11843362.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416730577|ref|ZP_11848716.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416740591|ref|ZP_11854514.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416751238|ref|ZP_11860048.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416754088|ref|ZP_11861112.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416760669|ref|ZP_11864957.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416769288|ref|ZP_11870978.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418483327|ref|ZP_13052337.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418490279|ref|ZP_13056827.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418497059|ref|ZP_13063480.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418501782|ref|ZP_13068161.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418506130|ref|ZP_13072468.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418507734|ref|ZP_13074043.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418511600|ref|ZP_13077851.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418526285|ref|ZP_13092263.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|452123897|ref|YP_007474145.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|353076776|gb|EHB42536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363554499|gb|EHL38735.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363567065|gb|EHL51073.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363579076|gb|EHL62874.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|366054863|gb|EHN19206.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366061907|gb|EHN26151.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366065853|gb|EHN30039.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366066203|gb|EHN30378.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366066393|gb|EHN30562.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366080502|gb|EHN44471.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366084450|gb|EHN48358.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366829097|gb|EHN55976.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372205841|gb|EHP19347.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|451912901|gb|AGF84707.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B]
gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B]
Length = 1060
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ EVAENG+ AV++F+ KFD++ +D MP+M+G EA
Sbjct: 942 LLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQKDGKFDVILMDCMMPIMDGFEA 1001
Query: 89 TREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+R+IR S G+ K I+ +T+ + + + +G+D KP+ +K+L +E M
Sbjct: 1002 SRQIRAYEASKGLAKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLYQIEQAM 1060
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 17 ENPSAKNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
E+ SA++++ LVVDD+ + I + + GF +VA NG+EAV+ F+ ++ ++
Sbjct: 765 ESTSAQHVKSLPKILVVDDNTVNQKIAGLHVTKAGFDFDVAVNGQEAVEKFQQN-QYSLI 823
Query: 75 FIDKEMPVMNGIEATREIRSMGIK------IKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+D MPVM+G EAT+ IR + +K I I+ +T+ + + + G+D KP
Sbjct: 824 LMDCMMPVMDGFEATQIIRQIEVKEKRAFRIPIIALTASVVDDDIQKCFDVGMDDYVPKP 883
Query: 129 L 129
Sbjct: 884 F 884
>gi|375119823|ref|ZP_09764990.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|445147348|ref|ZP_21388104.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445157831|ref|ZP_21392975.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|444844891|gb|ELX70117.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444845912|gb|ELX71094.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
Length = 948
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
BAA-613]
gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
BAA-613]
Length = 805
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS--GAKFDI 73
+ P A L L+V+D+ R I S LK LG +VE+AENG+EAV+ S +D
Sbjct: 655 VSGPEAAYRGLRVLLVEDNELNRQIASEMLKLLGVRVEMAENGREAVEAVCSHPALYYDA 714
Query: 74 VFIDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQA---GLDLCHTKPL 129
VF+D +MPVMNG EATREIR G+ +I + + ++ ++A E +A G++ KP+
Sbjct: 715 VFMDVQMPVMNGYEATREIRGSGMERIGELPIIAMTADAFAEDVKRARLSGMNGHLAKPV 774
Query: 130 SVD 132
S++
Sbjct: 775 SIE 777
>gi|423140896|ref|ZP_17128534.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379053450|gb|EHY71341.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 948
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTADKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|427702994|ref|YP_007046216.1| signal transduction histidine kinase [Cyanobium gracile PCC 6307]
gi|427346162|gb|AFY28875.1| signal transduction histidine kinase [Cyanobium gracile PCC 6307]
Length = 652
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD R + + L+SLG++ E A +G+EA++ R + D++ +D +MP ++G+EA
Sbjct: 527 LLVDDSAVNRRLCELMLRSLGYEPESAVDGQEALERQRH-LEPDLILMDVQMPRLDGLEA 585
Query: 89 TREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IRS G + IV +T+ + +REA +QAG++ KPL + +L
Sbjct: 586 TRRIRSCGGRADRPWIVALTAFTTAEDREAALQAGMNDVLAKPLRSEALL 635
>gi|421143574|ref|ZP_15603513.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
BBc6R8]
gi|404505265|gb|EKA19296.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
BBc6R8]
Length = 935
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
+G +I E P+ +L L LV +D+ + I L+ LG V +A +G EA+
Sbjct: 794 AQGSEELLSPRISEKPTEFSLNLRLLVAEDNLINQLILRDQLEELGCSVVLAGDGIEALS 853
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
L+ A FD++ D MP MNG E T ++R +G + I+G T+ E E + AG+D
Sbjct: 854 LWGDTA-FDMILTDVNMPRMNGYELTEQLRRLGCSLPIIGATANAMLDEAERCLNAGMDH 912
Query: 124 CHTKPLSV 131
C KP ++
Sbjct: 913 CLVKPFTL 920
>gi|395798549|ref|ZP_10477833.1| putative two-component system sensor kinase [Pseudomonas sp. Ag1]
gi|395337284|gb|EJF69141.1| putative two-component system sensor kinase [Pseudomonas sp. Ag1]
Length = 935
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
+G +I E P+ +L L LV +D+ + I L+ LG V +A +G EA+
Sbjct: 794 AQGSEELLSPRISEKPTEFSLNLRLLVAEDNLINQLILRDQLEELGCSVVLAGDGIEALS 853
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
L+ A FD++ D MP MNG E T ++R +G + I+G T+ E E + AG+D
Sbjct: 854 LWGDTA-FDMILTDVNMPRMNGYELTEQLRRLGCSLPIIGATANAMLDEAERCLNAGMDH 912
Query: 124 CHTKPLSV 131
C KP ++
Sbjct: 913 CLVKPFTL 920
>gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
Length = 915
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 771 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 830
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 831 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 889
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 890 LSKPVTLD 897
>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
Length = 1054
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ E+AENG+ A+D+F+ FDI+ +D MPVM+G EA
Sbjct: 936 LLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGFEA 995
Query: 89 TREIRSM----GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+EIR+ G+ K I+ +T+ + + + +G+D KP+ +K+L +E ++
Sbjct: 996 TKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESVI 1054
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + G++ ++A NG+EAV++F + ++ ++ +D MPVM+G EA
Sbjct: 773 LVVDDNTVNQKIAGLHVTKAGYEFDIAANGQEAVEMF-AKNQYALILMDCMMPVMDGFEA 831
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
T+ IR + G +I I+ +T+ + + + G+D KP P+++D
Sbjct: 832 TKRIRQLEKESNRGYQIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKA----PILKD 885
>gi|386396436|ref|ZP_10081214.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM1253]
gi|385737062|gb|EIG57258.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM1253]
Length = 897
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G ++S A+ + P ++ LR+ L+VDDD + LK LG +A NG A+ L
Sbjct: 631 GLAASGIAQGADQPPSRQLRV--LLVDDDPVNCEVGEAMLKRLGHHATIATNGASAIALA 688
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI--KIVGVTSLNSEAEREAFMQAGLDL 123
R A FDI+ +D MP M+G+EA IR +G+ +I+ VT+ S RE AG+
Sbjct: 689 RDHA-FDIILMDLHMPDMDGVEAASRIRKLGLPTMPRIIAVTADMSRRARERLADAGIAR 747
Query: 124 CHTKPLSVDKILPLMED 140
+KP+ ++ + +ED
Sbjct: 748 IVSKPILINALREAIED 764
>gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 21-1]
gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 21-1]
Length = 933
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
EG+ + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 788 EGDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 847
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 848 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 906
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 907 LSKPVTLDVI 916
>gi|424045676|ref|ZP_17783241.1| response regulator [Vibrio cholerae HENC-03]
gi|408886005|gb|EKM24698.1| response regulator [Vibrio cholerae HENC-03]
Length = 998
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ E+AENG+ AVD+F+ FDI+ +D MPVM+G +A
Sbjct: 880 LLVEDNTVNQKVASLLLSKAGYQFEIAENGQIAVDMFQQDNSFDIILMDCMMPVMDGFQA 939
Query: 89 TREIRSM----GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+EIR+ G+ K I+ +T+ + + + +G+D KP+ +K+L +E ++
Sbjct: 940 TKEIRAYERVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESVI 998
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF ++A NG+EAVD+F+ ++ ++ +D MPVM+G EA
Sbjct: 719 LVVDDNTVNQKIAGLHVTKAGFTFDLAANGQEAVDMFKKN-QYALILMDCMMPVMDGFEA 777
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T +IR + +I I+ +T+ + + + G+D KP
Sbjct: 778 TEKIRQVEKEENRSYRIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 824
>gi|357235977|ref|ZP_09123320.1| DNA-binding response regulator [Streptococcus criceti HS-6]
gi|356883959|gb|EHI74159.1| DNA-binding response regulator [Streptococcus criceti HS-6]
Length = 231
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + ++ AL+ G++V+ A NG+EAVDL R +D++ +D MP+ G+EA
Sbjct: 6 LLAEDEEQLARVYQAALEHQGYQVDHAPNGQEAVDLSRENP-YDVIILDIMMPIKTGLEA 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
EIR++G + I+ +T+++ +R + AG D TKP+S+ ++L
Sbjct: 65 LSEIRALGDRTHIIMLTAMSEINDRVTGLDAGADEYLTKPISLKELL 111
>gi|421614598|ref|ZP_16055652.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
SH28]
gi|408494685|gb|EKJ99289.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
SH28]
Length = 953
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 22 KNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF--RSGAKFDIVFID 77
+N++L A LVVDD IR + ++ G V A NG+EA+D + A+ D+V +D
Sbjct: 827 ENIQLSANILVVDDRRDIRYLAQHFIEKAGGTVITATNGQEAIDTIFAKPKAEIDLVVMD 886
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MPV++G +AT E+R G ++ ++ +T+ +++RE + AG TKPL K++ +
Sbjct: 887 MQMPVLDGYDATAELRRRGCELPVIALTANAMKSDREECLAAGCTDYTTKPLDSQKLIAM 946
Query: 138 MEDLMKN 144
++ L+K+
Sbjct: 947 IDRLLKS 953
>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal [Magnetospirillum gryphiswaldense
MSR-1]
Length = 935
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E P A LR+ LV +D+ + + L LG + +VA++G EAV+L R+G +D+V +
Sbjct: 683 EAPPAMPLRI--LVAEDNAINQQVAVGLLNKLGHRADVADDGAEAVELVRAG-DYDLVLM 739
Query: 77 DKEMPVMNGIEATREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
D +MP ++G+ ATR IR + +I I+ +T+ EA+R+A + AG+D KP+
Sbjct: 740 DMQMPRVDGLAATRLIRQLAEPKNRIAIIAMTANAMEADRQACLAAGMDDFLAKPI 795
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
PS + LVVDD+ R I L++ G +V A NG EA++ R+G +F ++ +D
Sbjct: 539 PSMPLAEVHILVVDDNSINREIFQRQLQAWGAQVSTAFNGMEALEALRAGTRFHVMVLDH 598
Query: 79 EMPVMNGIE 87
MP ++GI+
Sbjct: 599 LMPGLSGID 607
>gi|417324898|ref|ZP_12111030.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353577715|gb|EHC39792.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
Length = 675
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 531 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 590
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 591 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 649
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 650 LSKPVTLD 657
>gi|417420297|ref|ZP_12160002.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353619347|gb|EHC69773.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 684
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 540 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 599
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 600 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 658
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 659 LSKPVTLD 666
>gi|384253999|gb|EIE27473.1| hypothetical protein COCSUDRAFT_11065, partial [Coccomyxa
subellipsoidea C-169]
Length = 139
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDIVFIDKEMPVMN 84
L+ +D+ +T+ L LG EVA NG+E VD + GA FD V +D MP+M
Sbjct: 3 LLAEDNLINQTVAKKMLTVLGLVCEVACNGQEGVDAVKRGAADGRPFDCVLMDMAMPIMG 62
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
G+EA R +R +G + IV +T+ S+ +R+ + AG+D +KP+
Sbjct: 63 GVEAARVLRRLGYTLPIVAMTANASDRDRDECLNAGMDGFLSKPV 107
>gi|417342529|ref|ZP_12123314.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417532434|ref|ZP_12186814.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|353662753|gb|EHD01654.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|357956521|gb|EHJ81923.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
Length = 675
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 531 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 590
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 591 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 649
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 650 LSKPVTLD 657
>gi|417374613|ref|ZP_12144318.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353598988|gb|EHC55280.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
Length = 675
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 531 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 590
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 591 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 649
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 650 LSKPVTLD 657
>gi|256848291|ref|ZP_05553734.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
gi|256714889|gb|EEU29867.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
Length = 222
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + + +MA+ + G+ V+ AENG+ AVDL + A +D++ D MPV G+EA
Sbjct: 4 LLAEDEAQLSRVLTMAMTNAGYHVDHAENGQRAVDLAKDNA-YDVMIFDIMMPVKTGLEA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
+EIR+ G + ++ +T+++ ++ + AG D TKP S+ ++L + L + N
Sbjct: 63 LKEIRATGDRTYVMMLTAMSEVDDKVTGLDAGADDYMTKPFSLKELLARLRSLERRN 119
>gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 915
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 771 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 830
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 831 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 889
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 890 LSKPVTLD 897
>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
Length = 1000
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ E+AENG+ A+D+F+ FDI+ +D MPVM+G EA
Sbjct: 882 LLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGFEA 941
Query: 89 TREIRSM----GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+EIR+ G+ K I+ +T+ + + + +G+D KP+ +K+L +E ++
Sbjct: 942 TKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESVI 1000
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 7/107 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + G++ ++A NG+EAV++F + ++ ++ +D MPVM+G EA
Sbjct: 719 LVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMF-AKNQYALILMDCMMPVMDGFEA 777
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T+ IR + G +I I+ +T+ + + + G+D KP
Sbjct: 778 TKRIRQLEKEVNRGYRIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 824
>gi|436619924|ref|ZP_20514570.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434964899|gb|ELL57866.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
Length = 707
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 563 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 622
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 623 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 681
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 682 LSKPVTLD 689
>gi|417392021|ref|ZP_12154996.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353613337|gb|EHC65453.1| sensor protein RcsC, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 687
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 543 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 602
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 603 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 661
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 662 LSKPVTLD 669
>gi|350551561|ref|ZP_08920775.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796928|gb|EGZ50709.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1212
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
SS++ E P + L+V+DD + + AL+ LG ++AENG++A+ +
Sbjct: 849 SSRERMYAEQPLFAQWQARILLVEDDPVNQEVALGALQRLGLSADLAENGEQALQAL-AM 907
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
A +D+VF+D +MPV++G ATR++RS + +++ I+ +T+ + +RE + G++
Sbjct: 908 ATYDLVFMDVQMPVLDGFAATRKLRSQARSALNVQVPIIAMTANAMQGDREKCLACGMND 967
Query: 124 CHTKPLSVDKI 134
KPLS D +
Sbjct: 968 YLPKPLSRDAL 978
>gi|409250879|ref|YP_006886687.1| two component sensor kinase/response regulator protein RcsC
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|417366576|ref|ZP_12138806.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|353591548|gb|EHC49795.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 915
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 771 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 830
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 831 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 889
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 890 LSKPVTLD 897
>gi|383496972|ref|YP_005397661.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|380463793|gb|AFD59196.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
Length = 915
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 771 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 830
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 831 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 889
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 890 LSKPVTLD 897
>gi|379011380|ref|YP_005269192.1| putative sensor protein [Acetobacterium woodii DSM 1030]
gi|375302169|gb|AFA48303.1| putative sensor protein [Acetobacterium woodii DSM 1030]
Length = 1012
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G++ +K +I+ N N L+ +DD + + S LK G+ V++A NG +A ++
Sbjct: 756 GQAEEQKIEIIPNFEKINREYKILLTEDDKINQLVISRMLKECGYSVDIANNGFDAENMV 815
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
+ +DI+ +D +MP M+G+EAT+ I+ + + ++ +T+ + +RE F+ G+D
Sbjct: 816 KKN-NYDIILMDIQMPEMDGMEATKRIKKINKNVPVLAMTAYALQGDREKFLSLGMDGYI 874
Query: 126 TKPLSVDKILPLME 139
+KP+ V+ ++ +E
Sbjct: 875 SKPIKVETLVEEIE 888
>gi|444424360|ref|ZP_21219818.1| Signal transduction histidine kinase [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444242355|gb|ELU53869.1| Signal transduction histidine kinase [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 1000
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ E+AENG+ A+D+F+ FDI+ +D MPVM+G EA
Sbjct: 882 LLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGFEA 941
Query: 89 TREIRSM----GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+EIR+ G+ K I+ +T+ + + + +G+D KP+ +K+L +E ++
Sbjct: 942 TKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESVI 1000
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + G++ ++A NG+EAV++F ++ ++ +D MPVM+G EA
Sbjct: 719 LVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMFAKN-QYALILMDCMMPVMDGFEA 777
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T+ IR + G +I I+ +T+ + + + G+D KP
Sbjct: 778 TKRIRQLEKEVHRGYRIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 824
>gi|389738525|gb|EIM79723.1| hypothetical protein STEHIDRAFT_126395 [Stereum hirsutum FP-91666
SS1]
Length = 1167
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD--LFRSGAKFDIVFIDKEMPVM 83
L LVVDDD RT+ + L LG V+ A++G++ +D L K+D+V +D MPVM
Sbjct: 1021 LVVLVVDDDPMTRTLMTRMLTKLGCVVDTADDGQQFLDIILAEGARKYDLVSLDNYMPVM 1080
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
G +A RE+R+ G +VG T ++ +M+AG D TKP+ +M+DL
Sbjct: 1081 TGEDAVRELRARGRMDLVVGCTGNALTEDQLNYMEAGADKVLTKPI-------MMKDL 1131
>gi|238897326|ref|YP_002923003.1| hybrid sensory histidine kinase in two-component regulatory system
with EvgA, regulates multidrug resistance [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465081|gb|ACQ66855.1| hybrid sensory histidine kinase in two-component regulatory system
with EvgA, regulates multidrug resistance [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 1209
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
++ +K I EN K+ L LVVDD R + L LG +V VAENG +A++L++
Sbjct: 948 QAKEEKQLISENVQ-KSFSLRILVVDDHPANRLLLKSQLTRLGHQVVVAENGVQALELWK 1006
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
+ FD+V D MPVM+G TR +R S G I I+G+T+ E E+ A++ AG+D C
Sbjct: 1007 NDV-FDVVITDCSMPVMDGPTLTRHLREASKGPLI-ILGLTAHAREEEKVAYLAAGMDDC 1064
Query: 125 HTKPLSVDKI 134
KPL + ++
Sbjct: 1065 LFKPLRLSQL 1074
>gi|66828273|ref|XP_647491.1| response regulator receiver domain-containing protein
[Dictyostelium discoideum AX4]
gi|60475524|gb|EAL73459.1| response regulator receiver domain-containing protein
[Dictyostelium discoideum AX4]
Length = 382
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+DD R I S LK LG K+ +AENG +AV+ + K+DI+ +D MP+M G EA
Sbjct: 11 LVVEDDPLNRIIASKFLKKLGHKITLAENGLQAVNAVENN-KYDIILMDVNMPIMGGKEA 69
Query: 89 TREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ IR S+ IK I+G+T++ ER+ ++AG+D KP ++ +E +
Sbjct: 70 TKIIREMQQSLRIKTPIIGLTTV----ERQECIEAGMDDHLFKPCKFQQLDSKIEQYL 123
>gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 513
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 369 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 428
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 429 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 487
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 488 LSKPVTLDAL 497
>gi|392405380|ref|YP_006441992.1| response regulator receiver protein [Turneriella parva DSM 21527]
gi|390613334|gb|AFM14486.1| response regulator receiver protein [Turneriella parva DSM 21527]
Length = 118
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L VDD +R I S AL+S G +V +AE G++A+ F+SG +FD++ D MPVM+G
Sbjct: 5 LAVDDSEPMRAIVSQALRSGGHEVTLAEEGEDALTKFKSG-EFDLIITDINMPVMDGYAF 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+ +R++ I I+ +T+ E++R+A AG+D KP+ + L +++ ++
Sbjct: 64 VKAVRALNGDIPILALTTEGQESQRKAGEDAGVDGWIVKPIKPAQFLAIVKQIL 117
>gi|414175135|ref|ZP_11429539.1| hypothetical protein HMPREF9695_03185 [Afipia broomeae ATCC 49717]
gi|410888964|gb|EKS36767.1| hypothetical protein HMPREF9695_03185 [Afipia broomeae ATCC 49717]
Length = 897
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 20 SAKNLRLFA-----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
S K +RL A L+VDD F R + + LK+ G++V VA+NG E + + RSG +FD+V
Sbjct: 762 SRKEMRLSATAQTVLLVDDSAFFRNMLAPVLKAAGYRVTVAQNGHEGLSVLRSGNQFDVV 821
Query: 75 FIDKEMPVMNGI---EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121
D EMP MNG EA R R M + I+ ++S+ S A E QAG
Sbjct: 822 LTDIEMPDMNGFEFAEAIRADRRME-AMPIIALSSVVSPAAIERGRQAGF 870
>gi|269963784|ref|ZP_06178102.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831517|gb|EEZ85658.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 558
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ E+AENG+ AVD+F+ FDI+ +D MPVM+G +A
Sbjct: 440 LLVEDNTVNQKVASLLLSKAGYQFEIAENGQIAVDMFQQDNSFDIILMDCMMPVMDGFQA 499
Query: 89 TREIRSM----GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+EIR+ G+ K I+ +T+ + + + +G+D KP+ +K+L +E ++
Sbjct: 500 TKEIRAYERVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESVI 558
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + GF ++A NG+EAVD+F+ ++ ++ +D MPVM+G EA
Sbjct: 279 LVVDDNTVNQKIAGLHVTKAGFTFDLAANGQEAVDMFKKN-QYALILMDCMMPVMDGFEA 337
Query: 89 TREIR------SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T +IR S +I I+ +T+ + + + G+D KP
Sbjct: 338 TEKIRQVEKEESRSYRIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 384
>gi|381161140|ref|ZP_09870371.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380877376|gb|EIC19469.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1633
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L V+D+ + + + L+ G KV AENG+EA+++ R+ + +DIV +D++MP M+G
Sbjct: 1507 LRVLAVEDEKVNQIVIARLLEKKGCKVATAENGREALEVLRAES-YDIVLMDQQMPEMDG 1565
Query: 86 IEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
IEAT+ IR I I+ +T+ ++E M AG+D KP+S++++
Sbjct: 1566 IEATKAIRRGDAGERACNIPIIALTAFAMAGDKERLMNAGMDAYAPKPISIEQL 1619
>gi|355673640|ref|ZP_09059115.1| hypothetical protein HMPREF9469_02152 [Clostridium citroniae
WAL-17108]
gi|354814353|gb|EHE98953.1| hypothetical protein HMPREF9469_02152 [Clostridium citroniae
WAL-17108]
Length = 801
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
G G S ++K +I S R+ L+V+D+ R I + L+ LG VE+A NG++AVD
Sbjct: 650 GTGYSLTRKKEIPPVESFPEFRV--LLVEDNEINRQIATEMLEMLGATVEIAVNGRQAVD 707
Query: 64 LFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGI----KIKIVGVTSLNSEAEREAFM 117
S +DIVF+D +MPV+NG +A REIRS G+ ++ I+ +T+ +
Sbjct: 708 AVCSHPALYYDIVFMDIQMPVLNGYDAAREIRSSGMERINELPIIAMTADAFAEDANRAH 767
Query: 118 QAGLDLCHTKPLSVDKI 134
AG+D KP+S+D++
Sbjct: 768 LAGMDGHLAKPVSIDQL 784
>gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Labrenzia alexandrii DFL-11]
gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Labrenzia alexandrii DFL-11]
Length = 580
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 77/114 (67%), Gaps = 4/114 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L+ LG++ ++A+NG+EA+D +S A +D++F+D +MPVM+G+EA
Sbjct: 463 LVVEDIVTNQLVITGFLQKLGYEADIADNGQEAIDRVQS-ADYDMIFMDMQMPVMDGLEA 521
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAF---MQAGLDLCHTKPLSVDKILPLME 139
TR IR + +V + ++ + A ++ +Q+G++ TKP+S+DK+ +++
Sbjct: 522 TRRIRQLPGPAGLVPIFAMTANAMQQDMDLCLQSGMNGFLTKPISLDKLKTVLQ 575
>gi|437670015|ref|ZP_20815570.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435281776|gb|ELO59427.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
Length = 556
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 412 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 471
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 472 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 530
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 531 LSKPVTLD 538
>gi|388601250|ref|ZP_10159646.1| Signal transduction histidine kinase [Vibrio campbellii DS40M4]
Length = 1000
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ E+AENG+ A+D+F+ FDI+ +D MPVM+G EA
Sbjct: 882 LLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGFEA 941
Query: 89 TREIRSM----GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+EIR+ G+ K I+ +T+ + + + +G+D KP+ +K+L +E ++
Sbjct: 942 TKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESVI 1000
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + I + + G++ ++A NG+EAV++F + ++ ++ +D MPVM+G EA
Sbjct: 719 LVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMF-AKNQYALILMDCMMPVMDGFEA 777
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T+ IR + G + I+ +T+ + + + G+D KP
Sbjct: 778 TKRIRQLEKEVHRGYRTPIIALTASVVDDDIQKCFDVGMDDYVPKPF 824
>gi|406836202|ref|ZP_11095796.1| sensor protein [Schlesneria paludicola DSM 18645]
Length = 1992
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
SS + E + L+VDD R + + L+ G V+ A NG+EAV+L S
Sbjct: 1846 SSGNDGSLREEAVTTQQPMRILLVDDAPVNREVATGLLEMFGHHVQTATNGREAVELLES 1905
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
A FD+V +D EMP M+G+ A EIR S + I +T+ + R+ ++AG+D
Sbjct: 1906 QA-FDVVLMDLEMPEMDGMSAAIEIRKREQSKSVSTPIFAMTAHATNDIRDRCLEAGMDG 1964
Query: 124 CHTKPLSVDKILPLMEDL 141
TKP+ D+++ +E L
Sbjct: 1965 YLTKPIQPDELMATLESL 1982
>gi|323703453|ref|ZP_08115100.1| response regulator receiver protein [Desulfotomaculum nigrificans
DSM 574]
gi|323531543|gb|EGB21435.1| response regulator receiver protein [Desulfotomaculum nigrificans
DSM 574]
Length = 135
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD +R + + +K G + A+NG EAV+ RS K D+VF+D MP+MNG+EA
Sbjct: 8 LMVDDQVGVRYLLEILVKESGHRAHTAQNGVEAVEKVRS-IKPDLVFMDVRMPIMNGLEA 66
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+I+ + + ++V +T+ ++E +Q G C +KP V++I ++E+ N
Sbjct: 67 LGKIKMIAPRTQVVMMTAYSAEDTATIALQKGALKCMSKPFDVEEIKEILENFAWN 122
>gi|410625838|ref|ZP_11336608.1| signal transduction histidine kinase-like [Glaciecola mesophila KMM
241]
gi|410154458|dbj|GAC23377.1| signal transduction histidine kinase-like [Glaciecola mesophila KMM
241]
Length = 677
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRSGAKFDIVFIDKEMPVMN 84
LVVDD IR + +++ G +VE NG EA+D G +D+V ID MPVMN
Sbjct: 404 LVVDDVNDIRMLVGHMVQNSGLQVEYGRNGLEALDKVTDAHNDGQPYDLVLIDIHMPVMN 463
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G EA ++IRS GI+ +V +T+ + R+ + G KP+++D ++ +++
Sbjct: 464 GSEAIKQIRSSGIQSPVVAMTAATMKGVRDQLISQGFTNVLEKPINLDALMKVLD 518
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
+K+ + ++ ++N +L L+V+DD I ++ L+SLG V VA +G+E +D+F+
Sbjct: 550 TKQNNVSQHSESQN-KLHYLLVEDDVDAADITALLLESLGVDVHVAHSGQECLDVFKQRN 608
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102
+ V +D +P NG+ +EI ++++V
Sbjct: 609 DWSKVLMDLNLPDANGLNLAKEIHKSSPQVEMV 641
>gi|366158420|ref|ZP_09458282.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia sp. TW09308]
Length = 950
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ + S N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 814 LADKESTSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGIDALNVL-SKNHIDIV 872
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 873 LSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|392408688|ref|YP_006445295.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621824|gb|AFM23031.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1109
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E++ +K + E P LR+ L+ +D+ F + + S L +G + V NG EAV+ +
Sbjct: 844 ETARRKVRKTERP----LRI--LLAEDNAFNQKVASGMLSGMGHSISVVPNGAEAVEAYT 897
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLD 122
G FD++ +D +MP+M+G EAT IR+ +I IV +T+ +RE + AG+D
Sbjct: 898 RGG-FDVILMDVQMPLMDGFEATAAIRAFEKNGAPRIPIVAMTAHAMAGDRERCLNAGMD 956
Query: 123 LCHTKPLSVDKILPLMEDLMKN 144
KP+S +++ +E + +
Sbjct: 957 GYVAKPISSEELFCALEGIASD 978
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 17 ENPSAKNLRLF----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----G 68
E P +++LR L+VDD+ R I L G +NG+ A+ R G
Sbjct: 698 EIPVSQDLRTLKGTRVLIVDDNATNRRILVELLIQWGMIPSAVDNGRTALKTLRERYKMG 757
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
F +V +D MP M+G + + I+++ I+ +TS + E AG++ C
Sbjct: 758 TPFAMVLVDCMMPEMDGFQVSEAIKAIPELASTHIIMLTSALPDYSAEKCRAAGIETCLL 817
Query: 127 KPLSVDKILPLMEDLM 142
KP+ + + +L+
Sbjct: 818 KPIHKSNLYSAIHELL 833
>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1147
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+ +D+ + + L+ +G V V+ NG+EA+D + KFD+V +D +MP+M+
Sbjct: 896 RLHILLAEDNAVNQKLAVKMLERMGHTVSVSANGQEALDCLKI-QKFDLVLMDVQMPIMD 954
Query: 85 GIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
G+EATR +R + + IV +T+ + ++E + AG+D +KP++ ++ +ED
Sbjct: 955 GLEATRIVREHEKTSNEHVPIVAMTAYAMKGDKEKCLDAGMDGYISKPINAQELFETLED 1014
Query: 141 LMKN 144
L N
Sbjct: 1015 LFHN 1018
>gi|436684740|ref|ZP_20517890.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435004726|gb|ELL95676.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
Length = 415
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 271 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 330
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 331 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 389
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 390 LSKPVTLD 397
>gi|403057576|ref|YP_006645793.1| hypothetical protein PCC21_011370 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402804902|gb|AFR02540.1| hypothetical protein PCC21_011370 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 935
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+N + LVVDD R + + L SLG++ A +G +A+ + S DIV D M
Sbjct: 804 AENGDIMILVVDDHPINRRLLADQLSSLGYQAMTANDGVDALGVL-SKNHIDIVLTDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G TR +R G++ ++GVT+ ERE + AG+D C +KP+++D +
Sbjct: 863 PNMDGYLFTRRMREQGLRFPVIGVTANALAEERERCLGAGMDHCLSKPVTLDTL 916
>gi|365108472|ref|ZP_09336331.1| sensor protein rcsC [Citrobacter freundii 4_7_47CFAA]
gi|363640366|gb|EHL79837.1| sensor protein rcsC [Citrobacter freundii 4_7_47CFAA]
Length = 948
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
+ A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 DKAGATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2]
gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2]
Length = 948
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
+ A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 DKAGATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|125547273|gb|EAY93095.1| hypothetical protein OsI_14896 [Oryza sativa Indica Group]
Length = 132
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
NLR AL+V+D R I S L+ + V +NG+EAV+LF G FDIV D MP+
Sbjct: 9 NLR--ALLVEDIKVNRMILSQMLRKFQVETTVVQNGQEAVELFLGGETFDIVLTDNLMPI 66
Query: 83 MNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
M G EA +IR+MG + IVGV S+++ + E F AG DLC K
Sbjct: 67 MTGPEAISKIRAMGATDVMIVGV-SVDANS-MEEFKDAGADLCVPK 110
>gi|386391169|ref|ZP_10075950.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385732047|gb|EIG52245.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 672
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
+ A + E+ LR+ L+ +D+ R AL+ LG VE A +G+EA+ L +
Sbjct: 537 RSATVAESAQPGGLRI--LLAEDEPVNRIFTVRALQKLGHSVETAADGREAL-LLLGQSP 593
Query: 71 FDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
FD+V +D +MP +NG+EATR IRS + I +V +T+ +++RE + AG+D
Sbjct: 594 FDLVLMDIQMPRLNGLEATRMIRSGQVPGIATTIPVVALTAYAMDSDRERGLDAGMDEYV 653
Query: 126 TKPLSVDKILPLME 139
TKP +++ ME
Sbjct: 654 TKPFEPWELVEAME 667
>gi|167644777|ref|YP_001682440.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
gi|167347207|gb|ABZ69942.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
Length = 661
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENG---KEAVDLFRSGAKFDIVFIDKEMPV 82
L L+V+D+ R I L+++G VE+AE+G EAV L R G FD++F+D +MP
Sbjct: 523 LRVLIVEDNVTNRLIAGRLLQAMGAVVEIAEDGILGVEAVSLERDGRGFDLIFMDIQMPG 582
Query: 83 MNGIEATREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
++G+EA R IR +G + I+ +T+ ++ A++ AG++ KPLS
Sbjct: 583 IDGVEAARRIRDLGGAAARTPIIAMTANAMAHQQAAYLAAGMNGAVAKPLS 633
>gi|432372895|ref|ZP_19615935.1| sensor kinase RcsC [Escherichia coli KTE11]
gi|430895700|gb|ELC17955.1| sensor kinase RcsC [Escherichia coli KTE11]
Length = 950
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ + S N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 814 LADKESTSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGIDALNVL-SKNHIDIV 872
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 873 LSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|395230498|ref|ZP_10408802.1| sensor protein rcsC [Citrobacter sp. A1]
gi|424731441|ref|ZP_18160025.1| sensor protein [Citrobacter sp. L17]
gi|394715883|gb|EJF21668.1| sensor protein rcsC [Citrobacter sp. A1]
gi|422894092|gb|EKU33907.1| sensor protein [Citrobacter sp. L17]
Length = 948
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
+ A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 DKAGATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
Length = 802
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D + + L+S G +V++A NGKEAV G ++D++F+D +MP MNG EA
Sbjct: 558 LVAEDHEVNQQLFKTILESFGHEVDLASNGKEAVQA-THGRRYDLIFMDVQMPEMNGYEA 616
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T IRS GI IV VT+ E E G+ KP ++P+++ +
Sbjct: 617 TSAIRSSGIDTPIVAVTASALRGEEERCRNVGMSGFLVKPFKKRDLIPVLDRWL 670
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIVFIDKEMPVMN 84
LVVDD +R L G +E + NG A+D+ RS G F + +D+ MP M+
Sbjct: 398 LVVDDTPSVREAVCAYLSEWGCSIECSSNGPAALDVLRSQAAEGNGFTLCIVDQMMPGMD 457
Query: 85 GIEATREIRS 94
G + E+ S
Sbjct: 458 GWQFASEVNS 467
>gi|455644459|gb|EMF23559.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Citrobacter freundii GTC 09479]
Length = 948
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
+ A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 DKAGATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1]
gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1]
Length = 949
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
+S+S E+ + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 807 DSASAALPPPESATMANDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS 866
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
A DIV D MP M+G T+ IR G+ + ++GVT+ E++ +++G+D C +
Sbjct: 867 KNA-IDIVLSDVNMPNMDGYRLTQRIRQQGLTLPVIGVTANALAEEKQRCLESGMDSCLS 925
Query: 127 KPLSVD 132
KP+++D
Sbjct: 926 KPVTLD 931
>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1034
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVF 75
E P+ L LV +D+ F + L G +V+V +G++A L R+G FD++
Sbjct: 778 EKPATGARALRVLVAEDNEFNARLVEELLVRRGHRVQVVADGRQA--LSRAGTNDFDVLL 835
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+D MP +NG E R +R+ G ++ ++G+T+ + +RE + AG+D TKP+ + +L
Sbjct: 836 LDVHMPELNGFEVVRALRAAGSQLPVIGLTARSRPEDREECLAAGMDDFLTKPVRLPDLL 895
Query: 136 PLMEDLMKNN 145
ME L+ N
Sbjct: 896 AAMERLVPTN 905
>gi|406912463|gb|EKD52073.1| hypothetical protein ACD_62C00124G0009 [uncultured bacterium]
Length = 895
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Query: 29 LVVDDDCFIRTIHSM--ALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
LVVDDD +R I ++ AL+ G +EVA NGKEA+ + + D+V +D MPVM+G
Sbjct: 774 LVVDDD--VRNIFALTAALEQKGASIEVARNGKEALAKLKDNPRLDLVLMDIMMPVMDGY 831
Query: 87 EATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+ATREIR K+ I+ VT+ ++ ++ M+AG + KP+ +D++ ++
Sbjct: 832 QATREIRKQKRFAKLPIIAVTAKATKNDQVLCMEAGANDYLAKPIDLDQLFSVI 885
>gi|409198430|ref|ZP_11227093.1| PAS/PAC sensor hybrid histidine kinase [Marinilabilia salmonicolor
JCM 21150]
Length = 1033
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVMNGIE 87
L+V+D+ + I L +G + NG EAVDL ++ FD + +D +MPV+NG++
Sbjct: 919 LLVEDNPINQKITEKMLSRIGMVTTITNNGAEAVDLLIKNQETFDAILMDIQMPVLNGLD 978
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
ATRE+R GI I+ +T+ + +REA ++AG++ KP+ ++ + ++ M
Sbjct: 979 ATRELRKAGISTPIIAMTANVLKGDREACLEAGMNDYIGKPVKLNDLQHTIQKWM 1033
>gi|417350228|ref|ZP_12128665.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417519391|ref|ZP_12181545.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353570675|gb|EHC34878.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353646723|gb|EHC90055.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
Length = 497
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 353 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 412
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 413 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 471
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 472 LSKPVTLD 479
>gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220]
gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220]
Length = 928
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 800 ATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 858
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
P M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 859 PNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 910
>gi|260770516|ref|ZP_05879449.1| sensor histidine kinase CqsS [Vibrio furnissii CIP 102972]
gi|260615854|gb|EEX41040.1| sensor histidine kinase CqsS [Vibrio furnissii CIP 102972]
Length = 683
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ +RT ++ L+ G++V A +G++A+D +FD++ +D EMP+++GIEA
Sbjct: 568 LVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHN-EFDLILMDIEMPIIDGIEA 626
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IR I IVG T NS E Q+G++ KP DK+L
Sbjct: 627 TRVIRDSNKPYCHIPIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLL 676
>gi|417476474|ref|ZP_12170984.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353640763|gb|EHC85661.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
Length = 497
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 353 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 412
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 413 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 471
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 472 LSKPVTLD 479
>gi|417359585|ref|ZP_12133923.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353589110|gb|EHC47978.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
Length = 646
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 502 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 561
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 562 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 620
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 621 LSKPVTLD 628
>gi|406598292|ref|YP_006749422.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
gi|406375613|gb|AFS38868.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 702
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 19 PSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDI 73
PS + L F AL+V+D+ + + LK +G ++AENG+EAV+ + K + I
Sbjct: 556 PSKQELSAFKALIVEDNEINQLVIKEQLKEIGITADLAENGEEAVEKVKGALKGKSPYTI 615
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLS 130
+ +D MPVM+G+EAT+ IRSMG K + + + +L + A ++E +++G+D +KP+
Sbjct: 616 ILMDCHMPVMDGLEATKLIRSMGDKARDIPIIALTANALTGDKEKCLKSGMDDFISKPVG 675
Query: 131 VDKI 134
V ++
Sbjct: 676 VSRL 679
>gi|416657425|ref|ZP_11813683.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|417384403|ref|ZP_12149788.1| sensory kinase TorS [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417512140|ref|ZP_12176551.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|437733669|ref|ZP_20832060.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|353608990|gb|EHC62419.1| sensory kinase TorS [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353640746|gb|EHC85651.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|435286998|gb|ELO64222.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
Length = 646
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 502 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 561
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 562 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 620
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 621 LSKPVTLD 628
>gi|209528133|ref|ZP_03276607.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209491421|gb|EDZ91802.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 665
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIE 87
LVVDD+ IR I +L+S ++V VA NG EA+ ++R + D V ID MPVM G
Sbjct: 544 LVVDDEEPIREITKASLESFQYQVLVASNGVEAIKIYRQYLEQIDCVVIDIMMPVMAGKT 603
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
RE++S+ +IKIVG++ S + + G+D+ +KP + ++L +++ + ++
Sbjct: 604 TIRELKSLNPQIKIVGISGYFSVDIAKDIAELGVDIFLSKPFTTQELLEVLQKCLNSS 661
>gi|85675315|dbj|BAA16001.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli str. K12 substr. W3110]
Length = 124
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD R + + L SLG++ + A +G +A+++ S DIV D MP M+G
Sbjct: 3 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNMPNMDGYRL 61
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 62 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 107
>gi|423704400|ref|ZP_17678825.1| sensor kinase RcsC [Escherichia coli H730]
gi|385706639|gb|EIG43678.1| sensor kinase RcsC [Escherichia coli H730]
Length = 187
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 58 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 116
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 117 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 170
>gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Erwinia tasmaniensis Et1/99]
gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C)
[Erwinia tasmaniensis Et1/99]
Length = 951
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
AK+ E S N + LVVDD R + S L SLG++V+ A++G +A+++ S + D
Sbjct: 815 AKVGE--SVNNDDILILVVDDHPINRMLLSDQLGSLGYRVKTAQDGVDALNVI-SRNEID 871
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
IV D MP M+G T+ +R +G ++GVT+ E++ ++AG+D C +KP++++
Sbjct: 872 IVLTDVNMPNMDGYRLTQRLRELGQTFPVIGVTANALAEEKQRCIEAGMDNCLSKPVTME 931
Query: 133 KI 134
+
Sbjct: 932 TL 933
>gi|116666741|pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 4 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 62
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 63 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 116
>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
ATCC 27405]
gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|385778763|ref|YP_005687928.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|419722127|ref|ZP_14249276.1| PAS sensor protein [Clostridium thermocellum AD2]
gi|419724874|ref|ZP_14251931.1| PAS sensor protein [Clostridium thermocellum YS]
gi|125713549|gb|ABN52041.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum ATCC
27405]
gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|380771763|gb|EIC05626.1| PAS sensor protein [Clostridium thermocellum YS]
gi|380781881|gb|EIC11530.1| PAS sensor protein [Clostridium thermocellum AD2]
Length = 902
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 9 SSKKAKIMENPSAKNL--RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
SS KA+ N + L +L L+ +DD + + + LK + +AENG EA+ LF
Sbjct: 646 SSVKAECTSNADERVLGRKLNILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFE 705
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSM--GI--KIKIVGVTSLNSEAEREAFMQAGLD 122
+FD++ +D +MP M+GIEAT+ IR M G I I+ VT+ E +RE ++AG+D
Sbjct: 706 EN-EFDLILMDVQMPEMDGIEATKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMD 764
Query: 123 LCHTKPLSVDKIL 135
+KP S D I
Sbjct: 765 DYISKPFSFDDIY 777
>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
Length = 902
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 9 SSKKAKIMENPSAKNL--RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
SS KA+ N + L +L L+ +DD + + + LK + +AENG EA+ LF
Sbjct: 646 SSVKAECTSNADERVLGRKLNILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFE 705
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSM--GI--KIKIVGVTSLNSEAEREAFMQAGLD 122
+FD++ +D +MP M+GIEAT+ IR M G I I+ VT+ E +RE ++AG+D
Sbjct: 706 EN-EFDLILMDVQMPEMDGIEATKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMD 764
Query: 123 LCHTKPLSVDKIL 135
+KP S D I
Sbjct: 765 DYISKPFSFDDIY 777
>gi|125596271|gb|EAZ36051.1| hypothetical protein OsJ_20358 [Oryza sativa Japonica Group]
Length = 1024
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 17/135 (12%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-------------FD 72
+ L+V+D ++TI L LG VE+A +G +AVD+FR + +D
Sbjct: 887 MHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDGAKAVDMFRDAIERASVSEEHSVPLPYD 946
Query: 73 IVFIDKEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
++F+D +MP M+G EATR IR GI+ I+ +T+ + E + + + G+DL TKP
Sbjct: 947 VIFMDCQMPRMDGYEATRRIREEESRYGIRTPIIALTAHSMEDDLQKAIDVGMDLHMTKP 1006
Query: 129 LSVDKILPLMEDLMK 143
+ +I+ + + K
Sbjct: 1007 IERRRIVEAVHGVCK 1021
>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|123178190|sp|Q1B3X8.1|MPRA_MYCSS RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012472|sp|A3Q5L9.1|MPRA_MYCSJ RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012476|sp|A1UL70.1|MPRA_MYCSK RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length = 230
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+DL + + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|375132427|ref|YP_005048835.1| sensor histidine kinase/response regulator LuxN [Vibrio furnissii
NCTC 11218]
gi|315181602|gb|ADT88515.1| sensor histidine kinase/response regulator LuxN [Vibrio furnissii
NCTC 11218]
Length = 683
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ +RT ++ L+ G++V A +G++A+D +FD++ +D EMP+++GIEA
Sbjct: 568 LVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAIEHN-EFDLILMDIEMPIIDGIEA 626
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IR I IVG T NS E Q+G++ KP DK+L
Sbjct: 627 TRVIRDSNKPYCHIPIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLL 676
>gi|432793432|ref|ZP_20027516.1| sensor kinase RcsC [Escherichia coli KTE78]
gi|432799390|ref|ZP_20033412.1| sensor kinase RcsC [Escherichia coli KTE79]
gi|431339095|gb|ELG26157.1| sensor kinase RcsC [Escherichia coli KTE78]
gi|431343256|gb|ELG30220.1| sensor kinase RcsC [Escherichia coli KTE79]
Length = 949
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E ++ + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDNPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|357168523|ref|XP_003581688.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 759
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 21/156 (13%)
Query: 9 SSKKAKIMENPSAKNLRLF----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
S++ A + + P ++ RL L+ +D+ ++ I L LG VEVA +G AVD+
Sbjct: 591 SAETACLPQEPKIQDDRLLDGMRVLMAEDNQVLQIIQERMLSQLGATVEVAGDGSRAVDM 650
Query: 65 F-----RSGAK--------FDIVFIDKEMPVMNGIEATREIRS----MGIKIKIVGVTSL 107
F R+G +D+VF+D +MP+M+G EAT+ IR I IV +T+
Sbjct: 651 FIDALERAGVSEGHTVPLPYDLVFMDCQMPLMDGYEATKRIREEETHYKIHTPIVALTAH 710
Query: 108 NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
E + +QAG+DL TKP+ ++I+ + + K
Sbjct: 711 ALEEDLHQTIQAGMDLHLTKPIQREQIVDALHQICK 746
>gi|440760444|ref|ZP_20939556.1| Two-component sensor protein RcsC [Pantoea agglomerans 299R]
gi|436425817|gb|ELP23542.1| Two-component sensor protein RcsC [Pantoea agglomerans 299R]
Length = 950
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S + DIV D MP
Sbjct: 823 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNEIDIVLTDVNMPN 881
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 882 MDGYRLTQRLRQLGHLFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 931
>gi|417335039|ref|ZP_12118026.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353572859|gb|EHC36379.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 503
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 359 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 418
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 419 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 477
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 478 LSKPVTLD 485
>gi|55771375|dbj|BAD72542.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
gi|118790664|tpd|FAA00247.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|125554320|gb|EAY99925.1| hypothetical protein OsI_21926 [Oryza sativa Indica Group]
Length = 1048
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 17/135 (12%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-------------FD 72
+ L+V+D ++TI L LG VE+A +G +AVD+FR + +D
Sbjct: 911 MHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDGAKAVDMFRDAIERASVSEEHSVPLPYD 970
Query: 73 IVFIDKEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
++F+D +MP M+G EATR IR GI+ I+ +T+ + E + + + G+DL TKP
Sbjct: 971 VIFMDCQMPRMDGYEATRRIREEESRYGIRTPIIALTAHSMEDDLQKAIDVGMDLHMTKP 1030
Query: 129 LSVDKILPLMEDLMK 143
+ +I+ + + K
Sbjct: 1031 IERRRIVEAVHGVCK 1045
>gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella
variicola At-22]
gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella
variicola At-22]
Length = 946
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ ++ + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSRALMAPDAQIGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC
[Pantoea vagans C9-1]
gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC
[Pantoea vagans C9-1]
Length = 950
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S + DIV D MP
Sbjct: 823 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNEIDIVLTDVNMPN 881
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 882 MDGYRLTQRLRQLGHLFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 931
>gi|452853836|ref|YP_007495520.1| putative Histidine kinase [Desulfovibrio piezophilus]
gi|451897490|emb|CCH50369.1| putative Histidine kinase [Desulfovibrio piezophilus]
Length = 691
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + S L+ G V NG++A+D G +D+V +D +MPV+NGI+A
Sbjct: 570 LLAEDEQVNSIMASRLLRKAGHSVTTVGNGQQAIDALSRG-HYDLVLMDVQMPVINGIQA 628
Query: 89 TREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T IRS ++ + ++G+T+ A+++ F+ AG+++ TKP D++L + +M+
Sbjct: 629 TEIIRSGAVENVPNDLPVIGLTAFARSADKKRFLDAGMEMVVTKPYEADELLRAVSSVMR 688
Query: 144 N 144
+
Sbjct: 689 H 689
>gi|378766415|ref|YP_005194877.1| two component sensor kinase/response regulator protein RcsC
[Pantoea ananatis LMG 5342]
gi|365185890|emb|CCF08840.1| two component sensor kinase/response regulator protein RcsC
[Pantoea ananatis LMG 5342]
Length = 968
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S DIV D MP
Sbjct: 841 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNNIDIVLTDVNMPN 899
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 900 MDGYRLTQRLRQLGHVFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 949
>gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
Length = 950
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S + DIV D MP
Sbjct: 823 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNEIDIVLTDVNMPN 881
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 882 MDGYRLTQRLRQLGHLFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 931
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
NL L+ +D+ + + L LG +A +GK+AVDL R+ +DI+ +D +MPV
Sbjct: 657 NLHGSVLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLIRN-HHYDIILMDCQMPV 715
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G EAT +IR KI I+ +T+ +E +R + AG+D +KP ++D++
Sbjct: 716 MDGFEATAQIRQHLNKIPIIALTANATEDDRTQCLNAGMDDFLSKPYTLDQL 767
>gi|237749008|ref|ZP_04579488.1| two-component system sensor histidine kinase [Oxalobacter
formigenes OXCC13]
gi|229380370|gb|EEO30461.1| two-component system sensor histidine kinase [Oxalobacter
formigenes OXCC13]
Length = 825
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--FDIVFIDKEMPVMNGI 86
L+V+D+ R I + L G +VE A+NG+EA++ F S ++ + ++F+D +MPVM G+
Sbjct: 704 LLVEDNELNREIAEVILAESGIRVETAKNGQEALERFMSSSEGYYGLIFMDLQMPVMGGL 763
Query: 87 EATREIRSMGIK-IKIVGVTSLNSEAER---EAFMQAGLDLCHTKPLSVDKILPLME 139
E+TR+IRS+ K +IV + ++ + A R EA AG++ KPL +D++ +++
Sbjct: 764 ESTRKIRSLSRKDAQIVPIVAMTANAFREDVEAAKTAGMNEHLAKPLDIDRLHQILD 820
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 16 MENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV----DLFRS 67
++N S+ + LF LVVDDD L LG + E +G++A+ + +S
Sbjct: 544 LQNESSVDYCLFMKNAILVVDDDRIACETTCERLDELGIRNEWVLSGEQAIQKIAEKHQS 603
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIR-SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
G F +V ID +MP M+GIE TR IR +G I I+ ++ + + +G +
Sbjct: 604 GKDFSMVIIDLKMPKMDGIETTRLIRKQIGSDIPILLASAYDWMEYESKALASGANGFLV 663
Query: 127 KPL 129
KP+
Sbjct: 664 KPM 666
>gi|445497405|ref|ZP_21464260.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
gi|444787400|gb|ELX08948.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
Length = 1020
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+ G V V ENG+EA+ L R G + D+V +D +MPVM+G A
Sbjct: 901 LLVEDNPINQQVARGILEQAGAVVAVGENGEEALKLLRDGLQCDLVLMDVQMPVMDGFTA 960
Query: 89 TREIR-SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IR + + + ++ +T+ E+ERE + AG+D KP+ VD++
Sbjct: 961 TRAIRGELRMTLPVIAMTAGVMESERERCIAAGMDDFIGKPVDVDQMF 1008
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
M LG+G + K A R LVVDD+ R+ +++ G+ ++ G E
Sbjct: 745 MKLGDGAEAPKPAH----------RRHLLVVDDNPTSRSYLGKTIQAWGWTCDIVATGTE 794
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIR 93
A+ L RSG +D+ +D +MP M+G R ++
Sbjct: 795 ALALLRSGRAYDVALVDWQMPDMDGPATMRAVQ 827
>gi|182415647|ref|YP_001820713.1| histidine kinase [Opitutus terrae PB90-1]
gi|177842861|gb|ACB77113.1| histidine kinase [Opitutus terrae PB90-1]
Length = 590
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 3 LGEGESSSKKAKIME----NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENG 58
L E +++ A+ E + S LRL LV +D+ R + + LK LG V+ AENG
Sbjct: 449 LREARQTAEPARTTEPEPVHLSRPGLRL--LVAEDNGVNRVVAAGMLKKLGCVVDFAENG 506
Query: 59 KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ 118
EAV R ++D+V +D MP M+G ATREIR +I IV VT+ + +R +Q
Sbjct: 507 AEAVRKCRLN-RYDMVLMDCLMPEMDGWTATREIRRWDSRIPIVAVTANATNEDRSRCLQ 565
Query: 119 AGLDLCHTKPLSVDKILPLME 139
AG+ KPL + ++ +ME
Sbjct: 566 AGMTDYLPKPLRLPELARVME 586
>gi|372275028|ref|ZP_09511064.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pantoea sp. SL1_M5]
gi|390435245|ref|ZP_10223783.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pantoea agglomerans IG1]
Length = 950
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S + DIV D MP
Sbjct: 823 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNEIDIVLTDVNMPN 881
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 882 MDGYRLTQRLRQLGHLFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 931
>gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103]
gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103]
Length = 949
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S DIV D MP
Sbjct: 822 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNNIDIVLTDVNMPN 880
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 881 MDGYRLTQRLRQLGHVFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 930
>gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
Length = 876
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
+L LV +D+ F R + + L++ G +V A NG+EAV+++R ++ +D MP ++
Sbjct: 754 QLTILVAEDNEFNRQLLTDLLQNHGHRVLAANNGREAVEIYRD-KPCQLILMDMMMPELD 812
Query: 85 GIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G EATR IR + G +I I+GVT+ E + + AG+D C TKP+ + +L
Sbjct: 813 GPEATRAIRRLEAQGGSRIPIIGVTAGTQPEEIQKCLAAGMDCCFTKPVDIKTML 867
>gi|401675701|ref|ZP_10807690.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter sp. SST3]
gi|400217084|gb|EJO47981.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter sp. SST3]
Length = 948
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ ++ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 ESLASVNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Citrobacter koseri ATCC BAA-895]
gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895]
Length = 948
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 ATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
P M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|392980009|ref|YP_006478597.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter cloacae subsp. dissolvens SDM]
gi|392325942|gb|AFM60895.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter cloacae subsp. dissolvens SDM]
Length = 948
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ ++ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 ESLASVNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|398397689|ref|XP_003852302.1| histidine kinase M3YPp [Zymoseptoria tritici IPO323]
gi|339472183|gb|EGP87278.1| histidine kinase M3YPp [Zymoseptoria tritici IPO323]
Length = 968
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-- 67
++ I N ++ R L+V+D+ + + + L+S G V VA +G+EA+D R+
Sbjct: 817 TRTKPIASNSDSETRRRVVLLVEDNLVNQKVMAKQLRSAGHDVTVANHGQEALDHIRTTH 876
Query: 68 ------GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL-----NSEAEREA- 115
G + D+V +D EMP+M G+E T IR M +K +I G SL N+ AE++
Sbjct: 877 FCVPNGGVELDVVLMDIEMPIMGGLECTSRIREMEMKGEIQGRVSLIAVTANARAEQQKQ 936
Query: 116 FMQAGLDLCHTKPLSVDKILPLMEDL 141
M G D TKP ++ + M+ +
Sbjct: 937 AMDVGFDAVITKPFKMEALRVEMDSV 962
>gi|386078636|ref|YP_005992161.1| integral membrane sensor hybrid histidine kinase RcsC [Pantoea
ananatis PA13]
gi|354987817|gb|AER31941.1| integral membrane sensor hybrid histidine kinase RcsC [Pantoea
ananatis PA13]
Length = 949
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S DIV D MP
Sbjct: 822 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNNIDIVLTDVNMPN 880
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 881 MDGYRLTQRLRQLGHVFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 930
>gi|432602778|ref|ZP_19839022.1| sensor kinase RcsC [Escherichia coli KTE66]
gi|431141352|gb|ELE43117.1| sensor kinase RcsC [Escherichia coli KTE66]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|254787521|ref|YP_003074950.1| histidine kinase [Teredinibacter turnerae T7901]
gi|237685843|gb|ACR13107.1| histidine kinase [Teredinibacter turnerae T7901]
Length = 663
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 19 PSAKNLRLFA---LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKF 71
PS +++R ++ LVVDD IR++ + G +E AENG +AV++ SG F
Sbjct: 395 PSNESVRYYSGNVLVVDDLADIRSLVGHMVADSGVTIEYAENGLQAVEMATARQLSGEPF 454
Query: 72 DIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
D++ +D +MPV+ GIEA + +R+ G++ I+ +T+ + + +RE ++AG KP+
Sbjct: 455 DLILMDIQMPVLGGIEAAKRMRAAGLRQPIIALTASSMKGDREKCLKAGFSDFLGKPV 512
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+DD I ++ ++ G+K + A +GKEA++ + ++D V D +P +G +
Sbjct: 548 LIVEDDPHACEITALLIEQEGWKADQALSGKEALNKV-AHQQYDAVLFDINLPDTSGYKL 606
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+EI ++K++ ++ E + + F+ PL + P+ D++KN
Sbjct: 607 AKEIYKNNSEVKLIALS--GEEVDEDKFISV--------PLLHSILKPVNRDILKN 652
>gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM
1740]
gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes]
Length = 1555
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAEN 57
+LGEG S K + L A L+V+D+ R I L+ G ++++A+N
Sbjct: 1208 ILGEGIKQSGVQKADSHSLKNELTTRAGSQILLVEDNAMNREIIMGMLQPFGIRIDIAQN 1267
Query: 58 GKEAVDLFRSGAK-FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAF 116
G+EAV L++ K ++++ +D +MPVM+G EAT+ +R+ G + I+ +T+ +++ E
Sbjct: 1268 GQEAVTLYQENPKRYELILMDIQMPVMDGYEATKILRAQGANLPIIALTANAMKSDIERT 1327
Query: 117 MQAGLDLCHTKPLSVDKIL 135
AG+D KP+ V+K+
Sbjct: 1328 KAAGMDEHLNKPIVVEKLF 1346
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
L E E++ K++K + L+VDD + I + LK +V VA +G+EA+
Sbjct: 1074 LNEQENAPKESKAFSHKHV-------LIVDDTPSWQKILARLLKGFHIEVSVASSGEEAL 1126
Query: 63 DLFRSGAKF-DIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQA 119
L + F D++ +D +MP M+GIE T+ I+ I+ V+S E A +
Sbjct: 1127 RLIKEQPGFYDLILMDWKMPQMDGIETTKLIKESCETPPPTIIMVSSYRQENIVNAAKEQ 1186
Query: 120 GLDLCHTKPLS 130
G+++ KP++
Sbjct: 1187 GINVFLQKPIN 1197
>gi|407689219|ref|YP_006804392.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292599|gb|AFT96911.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 702
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 77/124 (62%), Gaps = 8/124 (6%)
Query: 19 PSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDI 73
PS + L F AL+V+D+ + + LK +G ++AENG+EAV+ +S K + I
Sbjct: 556 PSKQELSAFKALIVEDNEINQLVIKEQLKEIGIAADLAENGEEAVEKVKSALKGKSPYTI 615
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLS 130
+ +D MPVM+G+EAT+ IRSMG K + + + +L + A ++E +++G++ +KP+
Sbjct: 616 ILMDCHMPVMDGLEATKLIRSMGDKARDIPIIALTANALTGDKEKCLKSGMNDFISKPVG 675
Query: 131 VDKI 134
V ++
Sbjct: 676 VSRL 679
>gi|422334299|ref|ZP_16415306.1| sensor kinase RcsC [Escherichia coli 4_1_47FAA]
gi|373244686|gb|EHP64166.1| sensor kinase RcsC [Escherichia coli 4_1_47FAA]
Length = 246
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
+ LVVDD R + + L SLG++ + A +G +A+++ S DIV D MP M+G
Sbjct: 122 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNMPNMDG 180
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 181 YRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 229
>gi|334124899|ref|ZP_08498894.1| sensor histidine kinase RcsC [Enterobacter hormaechei ATCC 49162]
gi|333387970|gb|EGK59161.1| sensor histidine kinase RcsC [Enterobacter hormaechei ATCC 49162]
Length = 948
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 10 SKKAKIMENP---SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
S A ++ +P ++ N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 806 SDGATVLASPDELASVNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL- 864
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
S DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +
Sbjct: 865 SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLS 924
Query: 127 KPLSVD 132
KP+++D
Sbjct: 925 KPVTLD 930
>gi|116666739|pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 125 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 183
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 184 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 237
>gi|419958241|ref|ZP_14474306.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter cloacae subsp. cloacae GS1]
gi|388606924|gb|EIM36129.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter cloacae subsp. cloacae GS1]
Length = 948
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 10 SKKAKIMENP---SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
S A ++ +P ++ N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 806 SDGATVLASPDELASVNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL- 864
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
S DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +
Sbjct: 865 SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLS 924
Query: 127 KPLSVD 132
KP+++D
Sbjct: 925 KPVTLD 930
>gi|419920624|ref|ZP_14438736.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli KD2]
gi|432543829|ref|ZP_19780672.1| sensor kinase RcsC [Escherichia coli KTE236]
gi|432549319|ref|ZP_19786087.1| sensor kinase RcsC [Escherichia coli KTE237]
gi|432622468|ref|ZP_19858499.1| sensor kinase RcsC [Escherichia coli KTE76]
gi|388384508|gb|EIL46237.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli KD2]
gi|431074239|gb|ELD81803.1| sensor kinase RcsC [Escherichia coli KTE236]
gi|431079597|gb|ELD86551.1| sensor kinase RcsC [Escherichia coli KTE237]
gi|431159268|gb|ELE59825.1| sensor kinase RcsC [Escherichia coli KTE76]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli H299]
gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli H299]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia fergusonii ATCC 35469]
gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia fergusonii ATCC 35469]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ + + N + LVVDD R + + L SLG++ + A +G +A+++ A DIV
Sbjct: 814 VADKATDSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVISKNA-IDIV 872
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 873 LSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|438098252|ref|ZP_20862660.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435326461|gb|ELO98273.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
Length = 948
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNA 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>gi|375262002|ref|YP_005021172.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella oxytoca KCTC 1686]
gi|365911480|gb|AEX06933.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella oxytoca KCTC 1686]
Length = 948
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+A N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 819 TASNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDVN 877
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 878 MPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|350633843|gb|EHA22207.1| hypothetical protein ASPNIDRAFT_192530 [Aspergillus niger ATCC
1015]
Length = 652
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + I S L++ GF+V A NG+EAVD + +FD V +D+ MPVM+G A
Sbjct: 531 LLVEDNVINKRILSRKLQTSGFQVSEASNGQEAVDAIQQQGRFDCVLMDQVMPVMDGTTA 590
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
+R IR + ++ I+GVT+ A+++ + AG++ KP + ++ ++ L +
Sbjct: 591 SRTIRQLDGPMAQVPILGVTANVRTAQKDEMLAAGMNDIIYKPYKMPDLIERIKQLQQ 648
>gi|424815716|ref|ZP_18240867.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia fergusonii ECD227]
gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia fergusonii ECD227]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ + + N + LVVDD R + + L SLG++ + A +G +A+++ A DIV
Sbjct: 814 VADKATDSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVISKNA-IDIV 872
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 873 LSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|422806223|ref|ZP_16854655.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ + + N + LVVDD R + + L SLG++ + A +G +A+++ A DIV
Sbjct: 814 VADKATDSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVISKNA-IDIV 872
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 873 LSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
Length = 943
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIE 87
L DD+ R + AL +L V+ AENG+EA+++ K+DIVF+D MPVM+G E
Sbjct: 667 LAADDNAVNREVLREALSTLSVTVDFAENGQEALEMVNDKSTKYDIVFMDGSMPVMDGFE 726
Query: 88 ATREIRS------MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
ATR IR+ ++ IVG+T+ + + G+D C KP ++++++ +
Sbjct: 727 ATRRIRAGEDARGKEKRLPIVGLTAQVQGLGADHWKDVGMDECLYKPFTIERLVSTL 783
>gi|432617322|ref|ZP_19853436.1| sensor kinase RcsC [Escherichia coli KTE75]
gi|431153742|gb|ELE54637.1| sensor kinase RcsC [Escherichia coli KTE75]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|397906379|ref|ZP_10507188.1| Two-component response regulator SA14-24 [Caloramator australicus
RC3]
gi|397160599|emb|CCJ34525.1| Two-component response regulator SA14-24 [Caloramator australicus
RC3]
Length = 489
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDDD I +I + K+ G+ A+NG+EA+++F + D++ D MP MNG E
Sbjct: 375 LIVDDDRIILSILNKRYKNKGYDCLTAQNGEEALEIFNNNKDIDLIITDFYMPGMNGDEF 434
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
T+EIR + +KI+ ++ SE+ + + AG D TKP S
Sbjct: 435 TKEIRKLNKNVKIIVLSGHKSESHVQRALNAGADEYVTKPFS 476
>gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
gi|432719340|ref|ZP_19954309.1| sensor kinase RcsC [Escherichia coli KTE9]
gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
gi|431263152|gb|ELF55141.1| sensor kinase RcsC [Escherichia coli KTE9]
Length = 949
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|397659114|ref|YP_006499816.1| two-component sensor protein RcsC [Klebsiella oxytoca E718]
gi|394347333|gb|AFN33454.1| Two-component sensor protein RcsC [Klebsiella oxytoca E718]
Length = 948
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+A N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 819 TASNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDVN 877
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 878 MPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|375265502|ref|YP_005022945.1| sensor histidine kinase/response regulator [Vibrio sp. EJY3]
gi|369840823|gb|AEX21967.1| sensor histidine kinase/response regulator [Vibrio sp. EJY3]
Length = 576
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
++ KI N K L L LVV+D + + + L LG V ++ +G+EA+ +
Sbjct: 442 NRPVKIEANSPVKALNL--LVVEDTHSNQLVIKLILNKLGHNVHISSHGEEALAFLEDNS 499
Query: 70 -KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
DI+ +D MPVM+GI ATR IR GI I I+ +T+ E++R+ ++AG+D +KP
Sbjct: 500 DSIDIILMDVSMPVMDGITATRLIREKGITIPIIALTAHALESDRDKCLEAGMDSFISKP 559
Query: 129 LSVDKILPLMEDLMKNN 145
+ I ++ ++N+
Sbjct: 560 VRRQDIYEAIQVFVEND 576
>gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium
ICC168]
gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium
ICC168]
Length = 879
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E + N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 747 EKTAVANDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 805
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 806 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 861
>gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
At-9b]
gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
At-9b]
Length = 950
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
+ L+VDD R + S L +LG++V+ A++G +A+++ S DIV D MP M+G
Sbjct: 826 IMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNHIDIVLSDVNMPNMDG 884
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T+ +R +G ++GVT+ E++ M+AG+D C +KP+++D
Sbjct: 885 YRLTQRLRQLGHAFPVIGVTANALAEEKQRCMEAGMDNCLSKPVTLD 931
>gi|420332115|ref|ZP_14833771.1| response regulator [Shigella flexneri K-1770]
gi|391251010|gb|EIQ10229.1| response regulator [Shigella flexneri K-1770]
Length = 249
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 120 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 178
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 179 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 232
>gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
Length = 933
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 788 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 847
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 848 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 906
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 907 LSKPVTLDVI 916
>gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor
histidine kinase RcsC [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor
histidine kinase RcsC [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 948
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ ++ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 ESLASVNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|428221306|ref|YP_007105476.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427994646|gb|AFY73341.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1007
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
S + ++ P A +L L L+V+D+ + + LK +G+ ++AENG EA+ + +
Sbjct: 872 STQVNFIDPPLAASLPLNILLVEDNVVNQKVAIRILKRMGYSADLAENGLEAIATLQK-S 930
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+D+VF+D +MP M+G+ AT+EIR + I+ +T+ +RE + AG++ +
Sbjct: 931 SYDVVFMDIQMPEMDGLAATKEIRKLWKSATSPYIIAMTANAMIGDREICLDAGMNDYVS 990
Query: 127 KPLSVDKI 134
KP+S++KI
Sbjct: 991 KPISIEKI 998
>gi|429087411|ref|ZP_19150143.1| Two-component sensor protein RcsC [Cronobacter universalis NCTC
9529]
gi|426507214|emb|CCK15255.1| Two-component sensor protein RcsC [Cronobacter universalis NCTC
9529]
Length = 948
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 819 AEQNEDMMILVVDDHPINRRLLADQLGSLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 877
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 878 MPNMDGYRLTQRIRELGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|452850772|ref|YP_007492456.1| Hpt sensor hybrid histidine kinase (fragment) [Desulfovibrio
piezophilus]
gi|451894426|emb|CCH47305.1| Hpt sensor hybrid histidine kinase (fragment) [Desulfovibrio
piezophilus]
Length = 521
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +DD + L+ +G +V++AE+G +AVD + + FDIV +D EMPVMNGIEA
Sbjct: 401 LVAEDDLVNQRYVVRLLQRMGCQVQLAEDGLQAVDALKVNS-FDIVLMDVEMPVMNGIEA 459
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR IR G I I+ +T+ + + + AG++ KP+ +D + ++E
Sbjct: 460 TRHIREPGTGCLEPDIPIIALTAHAMWGDEQRCIHAGMNDYVAKPVDIDTVAAIIE 515
>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
Length = 831
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A RL L+V+D+ +T+ S L+ +G KV V NG EA++ F +G FD+V +D +M
Sbjct: 565 APERRLDILLVEDNPVNQTVASRMLERVGHKVTVVNNGAEAIEAFDAG-HFDLVLMDLQM 623
Query: 81 PVMNGIEATREIRSMGIK-----------IKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
PVM GIEAT+ IR+ + + IV +T+ E++R ++AG+D KP+
Sbjct: 624 PVMGGIEATQAIRAREARRSWAVQGGWRAVPIVAMTAHAMESDRARCLEAGMDDYVAKPI 683
Query: 130 SVDKIL 135
+L
Sbjct: 684 RAGDLL 689
>gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
AQ3810]
gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
K5030]
gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
AN-5034]
gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
Peru-466]
gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
AQ3810]
gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
Peru-466]
gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
AN-5034]
gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
K5030]
Length = 576
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+ S+ KI N +K L L L+V+D + + + L LG V +A +G EA+
Sbjct: 440 NQSRPVKIEHNRPSKALNL--LIVEDTQSNQLVIKLILNKLGHNVHIASHGAEALTFLEE 497
Query: 68 G-AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+ D++ +D MPVM+GI ATR IR GI I IV +T+ E++++ + AG+D +
Sbjct: 498 NDTRIDMILMDVSMPVMDGITATRLIRKKGITIPIVALTAHALESDKDKCLDAGMDSFVS 557
Query: 127 KPLSVDKILPLMEDLMK 143
KP+ I ++ L++
Sbjct: 558 KPVRRQDIYEAIQSLIE 574
>gi|410623247|ref|ZP_11334064.1| hypothetical protein GPAL_2583 [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410157169|dbj|GAC29438.1| hypothetical protein GPAL_2583 [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 882
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + +KSLG ++A NGKEAV+ + +D+V +D +MPV++GIEA
Sbjct: 762 LLVEDNAINQMLMGEMIKSLGLTHDIANNGKEAVEKVEANKAYDLVLMDVQMPVLDGIEA 821
Query: 89 TREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T+ IR G + IVGV++ + +R+ +++G++ TKP+
Sbjct: 822 TKLIRQSGNTTVPIVGVSAHAMQEDRDIALKSGMNEYLTKPI 863
>gi|420373908|ref|ZP_14873971.1| sensor kinase protein RcsC [Shigella flexneri 1235-66]
gi|391316931|gb|EIQ74316.1| sensor kinase protein RcsC [Shigella flexneri 1235-66]
Length = 948
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 ATNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|229589125|ref|YP_002871244.1| putative two-component system sensor kinase [Pseudomonas
fluorescens SBW25]
gi|229360991|emb|CAY47853.1| putative two-component system, sensor kinase [Pseudomonas
fluorescens SBW25]
Length = 940
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E P+ NL L LV +D+ + I L+ LG V +A +G EA+ L+ A FD++
Sbjct: 812 EAPAKLNLNLRLLVAEDNLINQLILRDQLEELGCSVVLAGDGIEALSLWGETA-FDMILT 870
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D MP MNG E T ++R +G + I+G T+ E E + AG+D C KP ++
Sbjct: 871 DVNMPRMNGYELTEQLRRLGCALPIIGATANAMLDEAERCLSAGMDHCLVKPFTL 925
>gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 932
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +DD R + +L+ + A NG++AV + + D+V +D +MPVMNG EA
Sbjct: 817 LLAEDDAVSRILIKRSLQEENLTILDAWNGRDAVQMIMQHPEIDLVLMDIKMPVMNGFEA 876
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+REI+ + ++ I+ T+ S+ ER ++AG D +KP++ K++ L+ L+
Sbjct: 877 SREIKKLRPELPIIAQTAFTSKEERLKALEAGCDSFMSKPINKQKLIELIRLLL 930
>gi|37526937|ref|NP_930281.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36786370|emb|CAE15423.1| sensor protein (capsular synthesis regulator component C)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 938
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
+ LVVDD R + + LKS+GF+ +A +G +A++ +SG DI+ D MP M+G
Sbjct: 823 IVVLVVDDHPINRRLLADQLKSIGFQTAMANDGLDALEYLKSGG-IDIILTDVNMPNMDG 881
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
T +R+ G K+ I+G+T+ E++ + AG+D C +KP+S+
Sbjct: 882 YALTMYLRNDGCKLPIIGITANALAEEKQRCIDAGMDDCLSKPVSL 927
>gi|402216678|gb|EJT96762.1| hypothetical protein DACRYDRAFT_119835 [Dacryopinax sp. DJM-731 SS1]
Length = 1248
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 14/120 (11%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
L+V+D+ + + L+ L + +VAENGK A+D+ ++ K+ +V +D +MPVMNG E
Sbjct: 1124 LLVEDNVVNQKLGIRLLQKLSHRCDVAENGKVALDMLQANEDKYSLVLMDCQMPVMNGFE 1183
Query: 88 ATREIRSM---GI---KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
TR+IRS+ G+ ++ IV +T+ S RE QAG D KPL L++DL
Sbjct: 1184 CTRQIRSLEHTGVRKGRLPIVALTANVSSESREESQQAGADFFLPKPL-------LLQDL 1236
>gi|402843925|ref|ZP_10892304.1| sensor kinase protein RcsC [Klebsiella sp. OBRC7]
gi|423104019|ref|ZP_17091721.1| sensor kinase RcsC [Klebsiella oxytoca 10-5242]
gi|376385661|gb|EHS98382.1| sensor kinase RcsC [Klebsiella oxytoca 10-5242]
gi|402275733|gb|EJU24869.1| sensor kinase protein RcsC [Klebsiella sp. OBRC7]
Length = 948
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+A N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 819 TASNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDVN 877
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 878 MPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|359455919|ref|ZP_09245124.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20495]
gi|358046996|dbj|GAA81373.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20495]
Length = 1074
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 8 SSSKKAKIMENPSAKNLRLF----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
+S KA I P NL F AL+VDD+ I S LK L + A NG EAV+
Sbjct: 744 ASESKASI--TPKPDNLIKFTGIKALIVDDNPLNIEITSAMLKKLDLDIVTAMNGLEAVE 801
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
++ FDI+F+D +MPVM+GI AT +IR G + IV +T+ +++A + AG++
Sbjct: 802 CVKNNI-FDIIFMDIQMPVMDGILATSKIRENGETLPIVALTAAVLPEDKKAAIDAGMND 860
Query: 124 CHTKPLSVDKILPLME 139
TKPL D + +E
Sbjct: 861 FLTKPLIFDMLFQSLE 876
>gi|386016490|ref|YP_005934777.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
Length = 880
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S DIV D MP
Sbjct: 753 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNNIDIVLTDVNMPN 811
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G +VGVT+ E++ M AG+D C +KP+++D
Sbjct: 812 MDGYRLTQRLRQLGHVFPVVGVTANALAEEKQRCMDAGMDNCLSKPVTLD 861
>gi|432815971|ref|ZP_20049755.1| sensor kinase RcsC [Escherichia coli KTE115]
gi|431364195|gb|ELG50739.1| sensor kinase RcsC [Escherichia coli KTE115]
Length = 949
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGIDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|237746390|ref|ZP_04576870.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377741|gb|EEO27832.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 1290
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF--RSGAKFDIVFIDKEMPVMNGI 86
LVV+D+ R I L+ GF VE AENG+ A+D F R +D++ +D MPVM+G+
Sbjct: 1169 LVVEDNELNREIAVSLLEMHGFAVETAENGQLALDAFLSRPAGYYDVILMDVRMPVMDGL 1228
Query: 87 EATREIRSMGI----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
EATR+IR G + ++ +T+ + + + +Q+G++ +KP+ V+++L +++
Sbjct: 1229 EATRQIRVSGKDDARSVPVIAMTANAFDEDLKQTLQSGMNGHLSKPVDVERMLKVLD 1285
>gi|376007610|ref|ZP_09784803.1| putative two-component hybrid sensor and regulator, histidine
kinase [Arthrospira sp. PCC 8005]
gi|375324010|emb|CCE20556.1| putative two-component hybrid sensor and regulator, histidine
kinase [Arthrospira sp. PCC 8005]
Length = 665
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIE 87
LVVDD+ IR I +L+S ++V VA NG EA+ ++R + D V ID MPVM G
Sbjct: 544 LVVDDEEPIREITKASLESFQYQVLVASNGVEAIKIYRQYLEQIDCVVIDIMMPVMAGKT 603
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
RE++S+ +IKIVG++ S + + G+D+ KP + ++L +++ + ++
Sbjct: 604 TIRELKSLNPQIKIVGISGYFSVDIAKDIAELGVDIFLAKPFTTQELLEVLQKCLNSS 661
>gi|358375262|dbj|GAA91846.1| histidine kinase G2 [Aspergillus kawachii IFO 4308]
Length = 652
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
+ E E K P + L+V+D+ + I S L++ GF+V A NG+EAV
Sbjct: 505 VSEDEDHQAPEKPRSEPRSHPRERRILLVEDNVINKRILSRKLQTSGFQVSEASNGQEAV 564
Query: 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG---IKIKIVGVTSLNSEAEREAFMQA 119
D + +FD V +D+ MP+M+G A+R IR + ++ I+GVT+ A+++ + A
Sbjct: 565 DAVQQQGRFDCVLMDQVMPIMDGTTASRAIRQLDGPMAQVPILGVTANVRTAQKDEMLAA 624
Query: 120 GLDLCHTKPLSVDKILPLMEDLMK 143
G++ KP + ++ ++ L +
Sbjct: 625 GMNDIIYKPYKMPDLIERIKQLQQ 648
>gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator
[Nitratiruptor sp. SB155-2]
gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator
[Nitratiruptor sp. SB155-2]
Length = 1044
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV +D+ + + L+ LG V++A NG EA + ++G +DI+F+D +MP+M+G+E
Sbjct: 776 ALVAEDNTINQKLIKKTLEDLGLTVDLANNGLEAFEKRKNG-DYDIIFMDIQMPIMDGVE 834
Query: 88 ATREI-----RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
AT EI S I I+ +T+ + +RE ++ G+D TKPL ++++ +++ +
Sbjct: 835 ATHEILEYEEESNQPHIPIIALTAHALKGDRERYINEGMDEYITKPLIKNELVAILKKFL 894
Query: 143 KN 144
K+
Sbjct: 895 KD 896
>gi|423063129|ref|ZP_17051919.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715251|gb|EKD10407.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 665
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIE 87
LVVDD+ IR I +L+S ++V VA NG EA+ ++R + D V ID MPVM G
Sbjct: 544 LVVDDEEPIREITKASLESFQYQVLVASNGVEAIKIYRQYLEQIDCVVIDIMMPVMAGKT 603
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
RE++S+ +IKIVG++ S + + G+D+ KP + ++L +++ + ++
Sbjct: 604 TIRELKSLNPQIKIVGISGYFSVDIAKDIAELGVDIFLAKPFTTQELLEVLQKCLNSS 661
>gi|381157023|ref|ZP_09866257.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880886|gb|EIC22976.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 790
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + +M L +G+ A NG++A+D S FD+VF+D MP M+G+EA
Sbjct: 669 LVVDDEPINAKVVTMMLGKMGYTASSAVNGRQALDAL-SEQPFDLVFMDISMPDMDGVEA 727
Query: 89 TREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TR+IR+ + I+ +T+ + +RE F+ AG+D KP+ + +M+ ++
Sbjct: 728 TRQIRANVAGNLDPSTPIIALTAHAMKGDRERFLAAGMDDYLPKPVEAKALREVMQRVL 786
>gi|336363430|gb|EGN91820.1| Tco5, signal transduction HAMP domain histidine kinase [Serpula
lacrymans var. lacrymans S7.3]
Length = 1000
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 25/145 (17%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF--------RSGA-------- 69
+ ALVVDDD RTI S L LG V A+NG+ A+++ ++G+
Sbjct: 850 MVALVVDDDMLTRTIMSRMLSRLGCTVSTADNGETALEMIIGRISMQGQNGSSHVINMNG 909
Query: 70 ------KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
K+D+VF+D +MP+M+G+E ++R M +VGVT ++ A++ AG+D
Sbjct: 910 SHEDSYKYDVVFLDNQMPIMSGLEVVSKLREMERDDFVVGVTGNALLEDQRAYIDAGVDH 969
Query: 124 CHTKPL---SVDKILPLMEDLMKNN 145
TKP+ S+ K+L ++ + N
Sbjct: 970 ILTKPVFESSLIKMLTTADERRRQN 994
>gi|357634588|ref|ZP_09132466.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357583142|gb|EHJ48475.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 671
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
+ A + E+ LR+ L+ +D+ R AL+ LG VE A +G+EA+ L +
Sbjct: 536 RPATVAESAQPGGLRI--LLAEDEPVNRIFTVRALQKLGHSVETAADGREAL-LLLGQSP 592
Query: 71 FDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
FD+V +D +MP +NG+EATR IRS + I +V +T+ +++RE + AG+D
Sbjct: 593 FDLVLMDIQMPRLNGLEATRMIRSGQVPGIATTIPVVALTAYAMDSDRERGLDAGMDEYV 652
Query: 126 TKPLSVDKILPLME 139
TKP +++ ME
Sbjct: 653 TKPFEPWELVEAME 666
>gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor
histidine kinase RcsC [Klebsiella sp. 1_1_55]
gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor
histidine kinase RcsC [Klebsiella sp. 1_1_55]
Length = 946
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 9 SSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
S++ ++ + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 803 SAENSRALMAPDAQIGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL 862
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 863 -SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCL 921
Query: 126 TKPLSVD 132
+KP+++D
Sbjct: 922 SKPVTLD 928
>gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1055
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+V+D+ R L+ G V ENG+EA+ L + F +V +D +MP M+
Sbjct: 919 RLNLLLVEDEALARLAIQGMLRREGHDVRTVENGREALTLL-AREPFALVLMDVQMPAMD 977
Query: 85 GIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G+EATR IRS + IV +T+ + ++E F+ AG+D TKP+ + ++L +++
Sbjct: 978 GLEATRRIRSGEAGLAAARTPIVAMTAYAMQGDKERFLAAGMDGYVTKPVELGELLAVID 1037
Query: 140 DLMKN 144
++ +
Sbjct: 1038 QVLSH 1042
>gi|206580985|ref|YP_002237365.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae 342]
gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
Length = 946
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 9 SSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
S++ ++ + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 803 SAENSRALMAPDAQIGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL 862
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 863 -SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCL 921
Query: 126 TKPLSVD 132
+KP+++D
Sbjct: 922 SKPVTLD 928
>gi|336381482|gb|EGO22634.1| BaeS type histidine kinase [Serpula lacrymans var. lacrymans S7.9]
Length = 1009
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 25/145 (17%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF--------RSGA-------- 69
+ ALVVDDD RTI S L LG V A+NG+ A+++ ++G+
Sbjct: 859 MVALVVDDDMLTRTIMSRMLSRLGCTVSTADNGETALEMIIGRISMQGQNGSSHVINMNG 918
Query: 70 ------KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
K+D+VF+D +MP+M+G+E ++R M +VGVT ++ A++ AG+D
Sbjct: 919 SHEDSYKYDVVFLDNQMPIMSGLEVVSKLREMERDDFVVGVTGNALLEDQRAYIDAGVDH 978
Query: 124 CHTKPL---SVDKILPLMEDLMKNN 145
TKP+ S+ K+L ++ + N
Sbjct: 979 ILTKPVFESSLIKMLTTADERRRQN 1003
>gi|374585700|ref|ZP_09658792.1| response regulator receiver protein [Leptonema illini DSM 21528]
gi|373874561|gb|EHQ06555.1| response regulator receiver protein [Leptonema illini DSM 21528]
Length = 121
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L VDD +R + L++ G++V +AE+G+E VD F +G KFD++ D MPVM+GI
Sbjct: 6 LAVDDSATMRDMVRDTLETGGYEVTLAEHGQEGVDKFAAG-KFDLIIADINMPVMDGITM 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
REIR + + I+ +T+ E+ ++ +AG D KP + L +++ ++++
Sbjct: 65 IREIRKLNSDVPIITLTTEAEESMKQKGREAGADGWIVKPFRPAQFLDIIKQILED 120
>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
Length = 1755
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL-FRSGAKFDIVFIDKEMPVMNGIE 87
L+V+D+ R + L G V +AE+G + V + + FDI+ +D +MPVM+G++
Sbjct: 1416 LLVEDNALNRQVAGELLTHEGASVVMAEDGLQGVRIATQQPDAFDIIIMDIQMPVMDGLQ 1475
Query: 88 ATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
ATREIR++ + + I+ +T+ S A+REA +QAG++ KP+ +D+++ L+ L++
Sbjct: 1476 ATREIRAVPVLAALPILAMTANASHADREACLQAGMNDHVGKPIDIDEVVELILKLVQ 1533
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA----VDLFRSGAKFDIVFIDKEMPVMN 84
LVVDD R I ++ G+ + E+G +A + ++G +D+V +D MP M+
Sbjct: 1270 LVVDDCEISREILVKTIEMRGWSCDAVESGAKALVKIISALKAGRPYDVVLVDWRMPEMD 1329
Query: 85 GIEATREIR 93
G+ + I+
Sbjct: 1330 GVATAKLIK 1338
>gi|345865191|ref|ZP_08817381.1| sensory/regulatory protein RpfC [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123689|gb|EGW53579.1| sensory/regulatory protein RpfC [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 1565
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R + L G V+ AENG+EAV + R+ A +D+V +D +MP M+G EA
Sbjct: 1189 LLVEDNAINREVAMELLSGAGLAVDTAENGREAVTMVRATA-YDLVLMDIQMPEMDGREA 1247
Query: 89 TREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IRSM K + I+ +T+ E +R+A ++AG++ KP+ + +
Sbjct: 1248 TRVIRSMASKAALPILAMTANVFEEDRQACLEAGMNDFIAKPVDPESLF 1296
>gi|88704190|ref|ZP_01101904.1| two-component system sensor histidine kinase/response regulator,
hybrid [Congregibacter litoralis KT71]
gi|88701241|gb|EAQ98346.1| two-component system sensor histidine kinase/response regulator,
hybrid [Congregibacter litoralis KT71]
Length = 1476
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 82/142 (57%), Gaps = 8/142 (5%)
Query: 7 ESSSKKAKIMENPS--AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
ESS ++ + N A ++ LVV+D + I L SLG KV++A NG+EAVDL
Sbjct: 1194 ESSGERTIQIGNDEDKANGIKTNILVVEDVAVNQQIAMTMLHSLGAKVQLAGNGEEAVDL 1253
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GI-KIKIVGVTSLNSEAEREAFMQA 119
F+ +K+D++F+D +MP+++G AT+ IR + G+ + I+ +T+ + +++ + A
Sbjct: 1254 FQK-SKYDLIFMDCQMPILDGYAATQRIRKIEQERGLPRTTIIALTAGGDQGDKQRALDA 1312
Query: 120 GLDLCHTKPLSVDKILPLMEDL 141
G++ TKP + + +E
Sbjct: 1313 GMNGLLTKPFTTHDLRKALESF 1334
>gi|171691683|ref|XP_001910766.1| hypothetical protein [Podospora anserina S mat+]
gi|170945790|emb|CAP72590.1| unnamed protein product [Podospora anserina S mat+]
Length = 1181
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 14 KIMENPSAKNLRLFALVVDDDCF-IRTIHSMALKSLGFKVEVAENGKEAVDLFRSG---- 68
+ MEN + +L LV DD+ I + M + V +A++G+EA DL ++
Sbjct: 989 RAMENKPPEQGKLRVLVADDNSTNIEVVSRMLKLEDIYDVTIAKDGQEAYDLVKANMENN 1048
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+FD++F+D +MP ++G+++TR IR MG IV +T+ + E+ + M++G+D +KP
Sbjct: 1049 QRFDVIFMDIQMPNLDGLQSTRLIRKMGYSAPIVALTAFSEESNVKECMESGMDEFLSKP 1108
Query: 129 L 129
+
Sbjct: 1109 I 1109
>gi|429213059|ref|ZP_19204224.1| RcsC [Pseudomonas sp. M1]
gi|428157541|gb|EKX04089.1| RcsC [Pseudomonas sp. M1]
Length = 1078
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
+ L +G A+ N ++ L L LV +D+ +T+ L+ LG V +A +G+E
Sbjct: 824 LALAQGSELPAPARATANIRSEGLGLHVLVAEDNPINQTLLCEQLEELGCSVSLASDGRE 883
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
A+ LF FD++ D MP MNG E T+ +R G + I+GVT+ E E G
Sbjct: 884 ALRLF-DDRHFDVLLSDVNMPNMNGYELTQALRGRGETLPIIGVTANALREEGERCRAVG 942
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
+D KP+S+ + L+ +L+
Sbjct: 943 MDAWLVKPISLRTLNDLLGELV 964
>gi|381403886|ref|ZP_09928570.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pantoea sp. Sc1]
gi|380737085|gb|EIB98148.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pantoea sp. Sc1]
Length = 950
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + L+VDD R + S L +LG++V+ A++G +A+++ S + DIV D MP
Sbjct: 823 NDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALNVL-SRNEIDIVLTDVNMPN 881
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ +R +G ++GVT+ E++ M AG+D C +KP+++D
Sbjct: 882 MDGYRLTQRLRQLGHLFPVIGVTANALAEEKQRCMDAGMDNCLSKPVTLD 931
>gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A]
gi|338203558|ref|YP_004649703.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
gi|423335172|ref|ZP_17312950.1| two-component system response regulator [Lactobacillus reuteri ATCC
53608]
gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri]
gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A]
gi|336448798|gb|AEI57413.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
gi|337728693|emb|CCC03806.1| two-component system response regulator [Lactobacillus reuteri ATCC
53608]
Length = 221
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D+ + + S A+ + G++V++A NG+EAV+ + A +D++ +D MPV +G+EA
Sbjct: 4 LVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENA-YDVIILDIMMPVKSGLEA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+EIR+ G + I+ +T++ E ++ + AG D TKP S+ ++L
Sbjct: 63 LKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELL 109
>gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
Length = 948
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ ++ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV
Sbjct: 816 ESLASLNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 875 DVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
Length = 720
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
A++M A + + L +D+ R + S +K L ++ AENG+EAVDLF+S A D
Sbjct: 570 ARVMPPSDASSRAMRVLAAEDNRTNRLVFSNMVKGLDIELTFAENGQEAVDLFQSLAP-D 628
Query: 73 IVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
++F+D MP M+G EATR IR++ G + IV +T+ + + AGLD TKP
Sbjct: 629 VIFMDISMPEMDGKEATRAIRAIEAQSGRHVPIVAMTAHAMTGDDAEILAAGLDHYLTKP 688
Query: 129 LSVDKI 134
L + I
Sbjct: 689 LRKEMI 694
>gi|365857568|ref|ZP_09397557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acetobacteraceae bacterium AT-5844]
gi|363715997|gb|EHL99414.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acetobacteraceae bacterium AT-5844]
Length = 830
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ + + S L++ G V +A++G+EA++ A+FD+V +D MPVM+GIEA
Sbjct: 569 LVVDDNRVNQMVISRILQAGGHHVTLADHGEEALERLDE-AEFDLVAMDLNMPVMDGIEA 627
Query: 89 TREIRSMGIK---IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T+ R + + I+ +T+ +E R ++AG+D C TKP+ +L L++ L++
Sbjct: 628 TKLYRMASLDLPHLPIIALTADATEYARTRALEAGMDACITKPVDAAALLNLIDHLLE 685
>gi|345876839|ref|ZP_08828601.1| phosphoenolpyruvate synthase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344226132|gb|EGV52473.1| phosphoenolpyruvate synthase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 1426
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R + L G V+ AENG+EAV + R+ A +D+V +D +MP M+G EA
Sbjct: 1050 LLVEDNAINREVAMELLSGAGLAVDTAENGREAVTMVRATA-YDLVLMDIQMPEMDGREA 1108
Query: 89 TREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IRSM K + I+ +T+ E +R+A ++AG++ KP+ + +
Sbjct: 1109 TRVIRSMASKAALPILAMTANVFEEDRQACLEAGMNDFIAKPVDPESLF 1157
>gi|403746687|ref|ZP_10955080.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus hesperidum URH17-3-68]
gi|403120546|gb|EJY54918.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus hesperidum URH17-3-68]
Length = 245
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDK 78
S NL LVVDD+ IRT+ GF VE E+GK A D+ + A K+D+V +D
Sbjct: 2 SGGNLVPTVLVVDDEASIRTLVEYNFSRSGFLVEGVEDGKTAYDILSTDARKYDLVVLDL 61
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+P M+G+E R +R G+KI I+ +T+ + E + ++ G D TKP S
Sbjct: 62 MLPGMDGMEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFS 113
>gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda]
Length = 224
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R S+ ++ LG +V+ AEN KEA D F DI +D +P +G+
Sbjct: 4 LVVEDNNLLRHHLSVQMRELGHQVDAAENAKEA-DFFVREQSPDIAIVDLGLPGEDGMSM 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS I + I+ +T+ S E+ A ++AG D TKP ++++L M+ LM+ N
Sbjct: 63 IRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRN 119
>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1112
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 29/163 (17%)
Query: 1 MMLGEGESSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAEN 57
+ LG KKAK +E+ +A + L LVV+D R L+S G +V+ A N
Sbjct: 805 LTLGISSVEDKKAKELEDRAADAGISSPLSILVVEDVELNREYMGYLLESRGHRVQFASN 864
Query: 58 GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM---------------------- 95
G+EAV F G +FD++ +D +MP ++G+EATR IRSM
Sbjct: 865 GEEAVSAFEPG-RFDLILMDIQMPGIDGLEATRRIRSMEGERLGERGMEHGARGGTPDVG 923
Query: 96 ---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
++ I+ +T+ +RE F++ G+D +KP+ K+L
Sbjct: 924 SRDSARVPIIALTAYAMPGDREKFLEEGMDGYVSKPVDPSKLL 966
>gi|134078587|emb|CAK49115.1| unnamed protein product [Aspergillus niger]
Length = 677
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + I S L++ GF+V A NG+EAVD + +FD V +D+ MP+M+G A
Sbjct: 556 LLVEDNVINKRILSRKLQTSGFQVSEASNGQEAVDAIQQQGRFDCVLMDQVMPIMDGTTA 615
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
+R IR + ++ I+GVT+ A+++ + AG++ KP + ++ ++ L +
Sbjct: 616 SRTIRQLDGPMAQVPILGVTANVRTAQKDEMLAAGMNDIIYKPYKMPDLIERIKQLQQ 673
>gi|71908559|ref|YP_286146.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal, partial [Dechloromonas aromatica
RCB]
gi|71848180|gb|AAZ47676.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal [Dechloromonas aromatica RCB]
Length = 777
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ R I + L+ L F+++ AENG+EA+ L +D++ +D +MPVM+G+EA
Sbjct: 645 LLVDDEPINREITQILLEDLHFRIDSAENGEEALAL-ACIYPYDLILMDMQMPVMDGLEA 703
Query: 89 TREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
TR IR++ G + I+ +T+ +RE + AG+D TKP+ + L+
Sbjct: 704 TRRIRALPDGHRFLIIAMTANAFSEDRERCLAAGMDDFTTKPIDPEAFFSLI 755
>gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family
[Edwardsiella tarda EIB202]
gi|387867987|ref|YP_005699456.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60]
gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family
[Edwardsiella tarda EIB202]
gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60]
Length = 224
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R S+ ++ LG +V+ AEN KEA D F DI +D +P +G+
Sbjct: 4 LVVEDNNLLRHHLSVQMRELGHQVDAAENAKEA-DFFVREQSPDIAIVDLGLPGEDGMSM 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS I + I+ +T+ S E+ A ++AG D TKP ++++L M+ LM+ N
Sbjct: 63 IRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRN 119
>gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 935
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+N + LVVDD R + + L SLG++ A +G +A+ + S DIV D M
Sbjct: 804 AENGDIMILVVDDHPINRRLLADQLGSLGYQAMTANDGIDALGVL-SKNHIDIVLTDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G TR +R G++ ++GVT+ ERE + AG+D C +KP+++D +
Sbjct: 863 PNMDGYLFTRRMREQGLRFPVIGVTANALAEERERCLGAGMDHCLSKPVTLDTL 916
>gi|433657728|ref|YP_007275107.1| Signal transduction histidine kinase [Vibrio parahaemolyticus
BB22OP]
gi|432508416|gb|AGB09933.1| Signal transduction histidine kinase [Vibrio parahaemolyticus
BB22OP]
Length = 576
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+ S+ KI N +K L L L+V+D + + + L LG V +A +G EA+
Sbjct: 440 NQSRPVKIEHNRPSKALNL--LIVEDTQSNQLVIKLILNKLGHNVHIASHGAEALTFLEE 497
Query: 68 G-AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+ D++ +D MPVM+GI ATR IR GI I IV +T+ E++++ + AG+D +
Sbjct: 498 NDTQIDMILMDVSMPVMDGITATRLIRKKGITIPIVALTAHALESDKDKCLDAGMDSFVS 557
Query: 127 KPLSVDKILPLMEDLMK 143
KP+ I ++ L++
Sbjct: 558 KPVRRQDIYEAIQSLIE 574
>gi|410463301|ref|ZP_11316828.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409983579|gb|EKO39941.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 1018
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+V+D+ R L+ G +V AENG+EA++L A FD+V +D +MPVM+
Sbjct: 882 RLNILLVEDESLARLAIQGMLRREGHEVATAENGREALELATREA-FDVVLLDVQMPVMD 940
Query: 85 GIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G+EA R R+ +V +T+ E ++E + AG+D KP+ +D +L ++
Sbjct: 941 GLEAARRFRAGEAGHEAAGWPLVAMTAYAMEGDKERILAAGMDGYVAKPVELDALLAVIA 1000
Query: 140 DLMKN 144
++ N
Sbjct: 1001 QVVAN 1005
>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 567
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S + + EN + + L+VDDD F RTI L+ G+++ A NGKEA+ +
Sbjct: 426 SERDMGLGENDAGEARGAHILLVDDDVFNRTIIGAWLRRWGYRLREATNGKEALAVLEE- 484
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+FD++ +D++MP M+GIE IR+ I ++ VT+ + +RE F+ AG++ +
Sbjct: 485 ERFDLILMDEQMPGMSGIETVDRIRADARWKNIPVIAVTANAMKGDRERFLAAGMNDYLS 544
Query: 127 KPLSVDKIL 135
KP S +L
Sbjct: 545 KPFSPADLL 553
>gi|317037824|ref|XP_001402418.2| histidine kinase G2 [Aspergillus niger CBS 513.88]
Length = 652
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + I S L++ GF+V A NG+EAVD + +FD V +D+ MP+M+G A
Sbjct: 531 LLVEDNVINKRILSRKLQTSGFQVSEASNGQEAVDAIQQQGRFDCVLMDQVMPIMDGTTA 590
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
+R IR + ++ I+GVT+ A+++ + AG++ KP + ++ ++ L +
Sbjct: 591 SRTIRQLDGPMAQVPILGVTANVRTAQKDEMLAAGMNDIIYKPYKMPDLIERIKQLQQ 648
>gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter sp. 638]
gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
638]
Length = 949
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
++ A N + LVVDD R + + L SLG++ A +G +A+++ S DIV
Sbjct: 817 QSAVAMNDDMMILVVDDHPINRRLLADQLGSLGYQCLTANDGVDALNVL-SKNHIDIVLS 875
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D MP M+G T+ IR +G+ + ++GVT+ E+E +++G+D C +KP+++D I
Sbjct: 876 DVNMPNMDGYRLTQRIRQLGMTLPVIGVTANALAEEKERCLESGMDSCLSKPVTLDVI 933
>gi|46117208|ref|XP_384622.1| hypothetical protein FG04446.1 [Gibberella zeae PH-1]
Length = 1191
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 19/156 (12%)
Query: 4 GEGESSSKKAKIMENPSAKNL--RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
G E + K A+ + P+ + + L+VDD+ + +M +K GF E AENG+EA
Sbjct: 1035 GSIEQNDKSARESQKPNKPEMPNKAHVLLVDDNKINLNLLTMFMKKCGFTYEEAENGEEA 1094
Query: 62 VDLFRSGA------------KFDIVFIDKEMPVMNGIEATREIRSMGIKIK-----IVGV 104
V+ F +FD V +D MPVMNG+EAT+ IR + K K + +
Sbjct: 1095 VETFTKSTIGKGEPRGPIKKRFDYVLMDISMPVMNGVEATKRIRKIEAKYKVPRTTVFAL 1154
Query: 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
T L S R + AG+DL KP+ ++ ++E+
Sbjct: 1155 TGLASADARLDAISAGVDLFLPKPVKFAELKTMLEN 1190
>gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 903
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 10 SKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
+ K+ + PS ++++ + L VDD+ + + LK + +V V +NGKEAV L +S
Sbjct: 648 ATKSAPLPTPSPRSVQAIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVRLAQS- 706
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIK--IVGVTSLNSEAEREAFMQAGLDLCHT 126
FDI+F+D +MP+M+GI AT+ IRS + + IV VT+ ERE ++ G+D
Sbjct: 707 QPFDIIFMDIQMPIMDGISATQAIRSQSLNTETPIVAVTAHAIPGERERLIRQGMDDYLA 766
Query: 127 KPLSVDKILPLMEDL 141
KP+ + L+ D
Sbjct: 767 KPIDESMLAQLITDF 781
>gi|338975798|ref|ZP_08631147.1| signal transduction histidine kinase CheA [Bradyrhizobiaceae
bacterium SG-6C]
gi|338231107|gb|EGP06248.1| signal transduction histidine kinase CheA [Bradyrhizobiaceae
bacterium SG-6C]
Length = 907
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 20 SAKNLRLFA-----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
S K +RL + L+VDD F R + + LK+ G++V VA+NG+E + + RSG FD+V
Sbjct: 772 SRKEMRLSSTAQTVLLVDDSAFFRNMLAPVLKAAGYRVTVAQNGQEGLAVLRSGNTFDVV 831
Query: 75 FIDKEMPVMNGI---EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121
D EMP MNG EA R R M + I+ ++S+ S A E QAG
Sbjct: 832 LTDIEMPEMNGFEFAEAIRADRKME-AMPIIALSSVVSPAAIERGRQAGF 880
>gi|388467999|ref|ZP_10142209.1| sensor histidine kinase/response regulator [Pseudomonas synxantha
BG33R]
gi|388011579|gb|EIK72766.1| sensor histidine kinase/response regulator [Pseudomonas synxantha
BG33R]
Length = 932
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L L LV +D+ + I L+ LG VE+A +G++A+ L+ +G FD+V D MP +
Sbjct: 808 LNLHLLVAEDNIINQLILRDQLEELGCTVELAADGQQALQLYTAG-NFDVVLTDVNMPHI 866
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
NG E RE+R G + I+G T+ E + + AG++ C KP ++
Sbjct: 867 NGYELARELRRQGCTLPIIGATANAMRGEADLCLAAGMNHCLVKPFAL 914
>gi|386823377|ref|ZP_10110527.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia plymuthica PRI-2C]
gi|386379715|gb|EIJ20502.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia plymuthica PRI-2C]
Length = 956
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 6 GESSSKKAKIMENP------SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
G S+ + +M+ P + N + LVVDD R + S L SLG++V A +G
Sbjct: 802 GTSTESGSTLMQLPLPTKASTVDNGDIHLLVVDDHPINRRLLSDQLSSLGYQVVTANDGV 861
Query: 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119
+A+D+ S DIV D MP M+G T+ +R + ++GVT+ E++ M+A
Sbjct: 862 DALDVL-SRNTVDIVLTDVNMPNMDGYRLTQRLRQQHFTLPVIGVTANALAEEKQRCMEA 920
Query: 120 GLDLCHTKPLSVDKI 134
G+D C +KP++++ +
Sbjct: 921 GMDNCLSKPVTLETL 935
>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
Length = 1079
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G SS ++ K +E + L L+ +D+ + + + L+S G V VA NG+EAV+LF
Sbjct: 772 GRSSRRREKPVETDVPRQRPLRILLAEDNAVNQRLAVVNLESWGHTVTVAHNGREAVELF 831
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGL 121
+ FD++ +D +MP M G EAT EIR G + IV +T+ + RE + AG+
Sbjct: 832 -TAQPFDLILMDSQMPRMGGFEATAEIRRREAGSGAHVPIVAMTANVMKGSREECLGAGM 890
Query: 122 DLCHTKPL 129
D KP+
Sbjct: 891 DGYVAKPM 898
>gi|217975276|ref|YP_002360027.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|217500411|gb|ACK48604.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
Length = 1629
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 2 MLGEGESSSKKAKIME-NPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAE 56
+L E ++ + K ME +P ++ R A LVV+D+ R + L G V +AE
Sbjct: 1257 ILAEAVLNAIEGKTMEAHPQPRSQRFLAGLTILVVEDNQLNRQVIDELLSYEGANVVLAE 1316
Query: 57 NGKEAVDL-FRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAER 113
G E V L SG FDIV +D +MP M+G+EATR IR+ G + I+ +T+ S+++R
Sbjct: 1317 GGMEGVSLVLESGDLFDIVIMDMQMPDMDGLEATRRIRADGRFAALPILAMTANASQSDR 1376
Query: 114 EAFMQAGLDLCHTKPLSVDKILP 136
+ + AG++ KP+ + +LP
Sbjct: 1377 QECLNAGMNDHVGKPIDMPLLLP 1399
>gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1127
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS- 67
S + A + S + L L LV +D R I L+++G +VE A NG+EAV +
Sbjct: 772 SGRSALVQRYRSLQGLHL--LVTEDHPINRQIAREILEAVGVQVETANNGREAVAAMQDH 829
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCH 125
G + D++ +D +MP+M+G EATREIR ++ I+ +T+ ERE + +G++
Sbjct: 830 GDRIDLILMDIQMPIMDGYEATREIRRRYSRNRLPIIAMTAHALTEERERCLSSGMNEHL 889
Query: 126 TKPLSVDKILPLMEDL 141
KP++V+K+ L+ L
Sbjct: 890 AKPIAVEKLYELLARL 905
>gi|400287033|ref|ZP_10789065.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter sp. PAMC
21119]
Length = 950
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIE 87
LVV+D + I L LG++ VAE+G++A+ ++ K ++ +D MPVM+G++
Sbjct: 834 LVVEDSPTNQKIVCKILTKLGYRTVVAEDGQQALSQLQAQHKEIALILMDCRMPVMDGLQ 893
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
AT+ IR+ G I IV +T+ NS +R+A G+D TKP++ +K+ +++ L+KN
Sbjct: 894 ATQAIRAQGSDIPIVALTANNSTEDRDACFAVGMDEFLTKPINKNKLQTVLQSLIKN 950
>gi|386339111|ref|YP_006035477.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|334861512|gb|AEH11983.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1629
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 2 MLGEGESSSKKAKIME-NPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAE 56
+L E ++ + K ME +P ++ R A LVV+D+ R + L G V +AE
Sbjct: 1257 ILAEAVLNAIEGKTMEAHPQPRSQRFLAGLTILVVEDNQLNRQVIDELLSYEGANVVLAE 1316
Query: 57 NGKEAVDL-FRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAER 113
G E V L SG FDIV +D +MP M+G+EATR IR+ G + I+ +T+ S+++R
Sbjct: 1317 GGMEGVSLVLESGDLFDIVIMDMQMPDMDGLEATRRIRADGRFAALPILAMTANASQSDR 1376
Query: 114 EAFMQAGLDLCHTKPLSVDKILP 136
+ + AG++ KP+ + +LP
Sbjct: 1377 QECLNAGMNDHVGKPIDMPLLLP 1399
>gi|417540530|ref|ZP_12192529.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353662491|gb|EHD01470.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 497
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 353 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 412
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ ++ G+D C
Sbjct: 413 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLEYGMDSC 471
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 472 LSKPVTLD 479
>gi|315497089|ref|YP_004085893.1| histidine kinase [Asticcacaulis excentricus CB 48]
gi|315415101|gb|ADU11742.1| histidine kinase [Asticcacaulis excentricus CB 48]
Length = 518
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 65/103 (63%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+ G +VE A +G+EA+ L +G +DIVF+D +P ++GI
Sbjct: 399 LLVEDNPVNALLAQILLQREGCRVERAASGEEALKLIEAGKPYDIVFMDLGLPGLDGIGT 458
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
TR +R+ G+K+ I+ +T+ E +R A + AG+D TKP+ +
Sbjct: 459 TRAMRANGVKLPIIALTANAYEEDRRACLTAGMDDFLTKPIEL 501
>gi|452966995|gb|EME72002.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 1523
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+V+D+ F + + S L G VE+AENG AV++ A +D+V +D +MPVM+G
Sbjct: 1269 LRVLLVEDNDFNQQVASELLADGGVVVELAENGAVAVEMV-GAAPYDMVLMDMQMPVMDG 1327
Query: 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+ ATREIR +G + I+ +T+ +A++E ++AG++ KP+ D +
Sbjct: 1328 VTATREIRRLGFGDLPIIAMTANAMQADKEKCLEAGMNDHLAKPIDPDAMF 1378
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
LG+G+ + K++ P + R+ LVVDD+ R + L ++ FKV+ E+G AV
Sbjct: 1102 LGKGKP---RRKLLPRPDLRGRRM--LVVDDNENARAVLVDMLAAMSFKVDDVESGALAV 1156
Query: 63 DLFRSGA----KFDIVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAF 116
+ R + IVF+D +MP M+GIE I+ +G+ ++ VT+ E
Sbjct: 1157 EAVRRTMGGDDAYQIVFLDWQMPGMDGIETAYAIKGLGLTRTPHMIMVTAHGREEVMAGA 1216
Query: 117 MQAGLDLCHTKPLS 130
AG++ KP++
Sbjct: 1217 EHAGIEEVLIKPVN 1230
>gi|307701276|ref|ZP_07638297.1| response regulator receiver domain protein [Mobiluncus mulieris
FB024-16]
gi|307613437|gb|EFN92685.1| response regulator receiver domain protein [Mobiluncus mulieris
FB024-16]
Length = 231
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV+DDD I ++ + +L++ GF E A G+EA + R FD+ +D +P M+G++
Sbjct: 9 ALVLDDDPHIASVITFSLETRGFSWETASTGREAWAMLRK-KHFDLAVLDVMLPDMSGVD 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
TR IR+ I I+ V++L E+ER A ++AG D KP S
Sbjct: 68 LTRRIRA-AFSIPIILVSALGEESERIAGLEAGADDYIVKPFS 109
>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
Length = 803
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMN 84
L LV +D+ R + L LG + AENG+EAVDL GA +FD++ +D EMP M+
Sbjct: 670 LQVLVAEDNPVNRMVIKGLLGKLGIQPVFAENGREAVDLVHHGAQRFDLILMDCEMPEMD 729
Query: 85 GIEATREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G EATR IR + + + +V +T+ + REA +G++ KP++ D + +
Sbjct: 730 GFEATRNIRELERRSGRPAVPVVALTAHALQEHREAVFASGMNYYLAKPITFDSLYAAFD 789
Query: 140 DL 141
L
Sbjct: 790 AL 791
>gi|392424042|ref|YP_006465036.1| CheY-like receiver domain-containing protein [Desulfosporosinus
acidiphilus SJ4]
gi|391354005|gb|AFM39704.1| CheY-like receiver domain-containing protein [Desulfosporosinus
acidiphilus SJ4]
Length = 145
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 18 NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
N K L+L L+V+DD R + G++V +AENG+ AVD+++ +F+++ +D
Sbjct: 15 NRQKKPLKL--LIVEDDEINRMVMEKIAIRKGWEVLLAENGEVAVDIYQK-LEFEVIIMD 71
Query: 78 KEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+MP+++G +ATR IR + G I I+ +T+ E +RE + AG+D TKP+ +
Sbjct: 72 CQMPILDGFKATRAIRQLESNSGTHIPIIALTANTLEGDREKCLNAGMDDYLTKPIETND 131
Query: 134 ILPLME 139
++E
Sbjct: 132 FYTIVE 137
>gi|227874623|ref|ZP_03992786.1| response regulator [Mobiluncus mulieris ATCC 35243]
gi|227844832|gb|EEJ54978.1| response regulator [Mobiluncus mulieris ATCC 35243]
Length = 229
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV+DDD I ++ + +L++ GF E A G+EA + R FD+ +D +P M+G++
Sbjct: 7 ALVLDDDPHIASVITFSLETRGFSWETASTGREAWAMLRK-KHFDLAVLDVMLPDMSGVD 65
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
TR IR+ I I+ V++L E+ER A ++AG D KP S
Sbjct: 66 LTRRIRA-AFSIPIILVSALGEESERIAGLEAGADDYIVKPFS 107
>gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 705
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 18 NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
+ +A +LR+ L+V+DD R + LK +G V+ A NG EA++ R + FD V +D
Sbjct: 574 DSAAPSLRI--LLVEDDEISRVAETQLLKKMGHTVQTAGNGIEALESMRR-STFDCVLMD 630
Query: 78 KEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+M VM+G+EAT+ IR+ KI IV +T+ +RE F+ AG+D KP +
Sbjct: 631 VQMEVMDGLEATKNIRTDVSKFFDPKIPIVAMTAYAMRGDRERFIMAGMDDYIAKPFDRN 690
Query: 133 KI 134
K+
Sbjct: 691 KL 692
>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
Length = 1626
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 8/143 (5%)
Query: 2 MLGEGESSSKKAKIME-NPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAE 56
+L E ++ + K M+ NP ++ RL A LVV+D+ R + L G V +AE
Sbjct: 1257 ILAEAVLNAIEGKTMDANPKPRSQRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAE 1316
Query: 57 NGKEAV-DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAER 113
G E V + SG FD V +D +MP ++G+EATR IR+ G ++ I+ +T+ S+A++
Sbjct: 1317 GGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRADGRFDQLPILAMTANASQADK 1376
Query: 114 EAFMQAGLDLCHTKPLSVDKILP 136
+ ++AG++ +KP+ + ++LP
Sbjct: 1377 QECLEAGMNAHVSKPIDMQQLLP 1399
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 14 KIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA---- 69
++ NP A LVVDD+ I S L G VE A G +A++ +
Sbjct: 1129 EVEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQ 1188
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMG 96
+FD+V +D MP ++G++ +++ G
Sbjct: 1189 QFDVVLMDWRMPDIDGLQTAEMLKNAG 1215
>gi|421499219|ref|ZP_15946274.1| hybrid sensory histidine kinase BarA [Aeromonas media WS]
gi|407181745|gb|EKE55747.1| hybrid sensory histidine kinase BarA [Aeromonas media WS]
Length = 906
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L VDD+ + + LK + +V V +NGKEAV+L +S FDI+F+D +MPVM+GI A
Sbjct: 668 LAVDDNAANLKLIAAMLKEMVTEVVVCKNGKEAVNLAQS-QPFDIIFMDIQMPVMDGISA 726
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
T+ IR S+ + IV VT+ ERE ++ G+D +KP+ + L+ D
Sbjct: 727 TQAIRHHSLNTETPIVAVTAHAIPGERERLIRQGMDDYLSKPIDEGMLAQLITDF 781
>gi|269977578|ref|ZP_06184545.1| transcriptional regulatory protein ResD [Mobiluncus mulieris 28-1]
gi|269934181|gb|EEZ90748.1| transcriptional regulatory protein ResD [Mobiluncus mulieris 28-1]
Length = 229
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV+DDD I ++ + +L++ GF E A G+EA + R FD+ +D +P M+G++
Sbjct: 7 ALVLDDDPHIASVITFSLETRGFSWETASTGREAWAMLRK-KHFDLAVLDVMLPDMSGVD 65
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
TR IR+ I I+ V++L E+ER A ++AG D KP S
Sbjct: 66 LTRRIRA-AFSIPIILVSALGEESERIAGLEAGADDYIVKPFS 107
>gi|262191140|ref|ZP_06049343.1| signal transduction histidine kinase [Vibrio cholerae CT 5369-93]
gi|262032975|gb|EEY51510.1| signal transduction histidine kinase [Vibrio cholerae CT 5369-93]
Length = 226
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
+S+S +I+ + KN + LVV+D + + + L LG+ V +AENG++AV+L
Sbjct: 94 QSTSSSQQIV---NVKNHHI--LVVEDTKTNQMVIQLLLNKLGYDVTIAENGQQAVELLD 148
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FD+V +D MP+M+GI AT+ +R I+I I+ +T+ + ++++ + AG++
Sbjct: 149 RNHAFDLVLMDISMPIMDGIAATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVL 208
Query: 127 KPLSVDKILPLMEDLM 142
KP+ I+ +++ +
Sbjct: 209 KPIRSKDIMEVVKRFL 224
>gi|301057759|ref|ZP_07198828.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
gi|300448070|gb|EFK11766.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
Length = 438
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 19/130 (14%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNGIE 87
L+V+D+ + + M LK G++V+VA NGKEAV+ L S FD++F+D +MP M+G+
Sbjct: 303 LLVEDNPVNQKLAKMMLKKAGYQVQVANNGKEAVEMLMASQNGFDLIFMDVQMPEMDGLT 362
Query: 88 ATREIRSM------------------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
ATREIR + +I I+ +T+ + ++E M AG+D KP+
Sbjct: 363 ATREIRRLEKEHVLRPPRGRDFHPLTRRRIPIIAMTAHAMKGDQETCMDAGMDDYVAKPI 422
Query: 130 SVDKILPLME 139
D + ++E
Sbjct: 423 KRDVVFSVVE 432
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G+S SK+++ S + AL+VDD+ I + L+ +G ++ + + G + + L
Sbjct: 122 GKSESKESRPYTPVSLTGKK--ALLVDDNETNLKILARYLEPVGMRLVLLDKGMDVLPLL 179
Query: 66 RSGA----KFDIVFIDKEMPVMNGIEATREIR-------SMGIKIKIVGVTSLNSEAERE 114
FDI D +MP M+G E R+IR + + I+ + + +L+S ER+
Sbjct: 180 EKSIDEQDPFDICIADIQMPDMSGYEVARQIRLFESPHARLRMSIRSLPLMALSSMMERD 239
Query: 115 AFM--QAGLDLCHTKPLSVDKILPLMEDLM 142
A + G D KP+ +++ ++E ++
Sbjct: 240 AKRCGEVGFDGFLAKPVRRERLYRMLERIL 269
>gi|423706264|ref|ZP_17680647.1| sensor kinase RcsC [Escherichia coli B799]
gi|385712148|gb|EIG49103.1| sensor kinase RcsC [Escherichia coli B799]
Length = 949
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLSVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|254487929|ref|ZP_05101134.1| sensory box histidine kinase/response regulator [Roseobacter sp.
GAI101]
gi|214044798|gb|EEB85436.1| sensory box histidine kinase/response regulator [Roseobacter sp.
GAI101]
Length = 786
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 6/111 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIE 87
L+V+D+ R + + S G +V A NG+EAV++ +GA+ FD++F+D MPVM+G
Sbjct: 542 LLVEDNKINRIVAREMITSAGHQVSEAHNGREAVEM--AGAQAFDLIFMDISMPVMDGRG 599
Query: 88 ATREIRS---MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
ATR IR+ + IV +T+ E+EAF+ G++ TKPLS D +L
Sbjct: 600 ATRAIRAGQGASAQTPIVALTANAMAEEQEAFLSDGMNYVLTKPLSRDDLL 650
>gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1358
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
GE + + P R+ LV +D+ + L+S GF+V+VA+NG + VDLF
Sbjct: 1125 GERTERGRITGLEPGQPEFRV--LVCEDEPTSAAVLLRFLQSAGFQVKVADNGAKGVDLF 1182
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDL 123
++ + D +++D MPVMNG EA + IR++ G +KI GV++ ER + AG+D
Sbjct: 1183 QTW-RPDFIWMDLRMPVMNGAEAAKRIRAVEGGRAVKIAGVSASAFAEERSEVLAAGMDD 1241
Query: 124 CHTKPLSVDKILPLM 138
KP +I M
Sbjct: 1242 FVRKPFRAAEIFDCM 1256
>gi|429094934|ref|ZP_19157443.1| Two-component sensor protein RcsC [Cronobacter dublinensis 1210]
gi|426739961|emb|CCJ83556.1| Two-component sensor protein RcsC [Cronobacter dublinensis 1210]
Length = 950
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKTHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|354724459|ref|ZP_09038674.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter mori LMG 25706]
Length = 948
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 10 SKKAKIMENPSA---KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
S A + +P A N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 806 SDGATALPSPDALASVNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL- 864
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
S DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +
Sbjct: 865 SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLS 924
Query: 127 KPLSVD 132
KP+++D
Sbjct: 925 KPVTLD 930
>gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Methylophaga thiooxidans DMS010]
gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Methylophaga thiooxydans DMS010]
Length = 690
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
+ + A++M +NL + LV DD T+ M L+ +G+ + A NG+EA+D +
Sbjct: 555 AQQTAQVMLPDVQQNLNI--LVADDLSMNLTMMVMMLEKIGYTADTANNGREALDK-QMT 611
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCH 125
+D++F+D EMP M+G+EATR IR + IV +T+ S +E +QAG++
Sbjct: 612 HHYDLIFMDWEMPEMDGVEATRLIREQAESAQKPWIVALTANASSTHKEKCIQAGMNDYL 671
Query: 126 TKPLSVDKI 134
+KP+ +D+I
Sbjct: 672 SKPVGIDQI 680
>gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
Length = 1367
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ R + S L + G + +AE+G +A+D ++ + +D++F+D +MP M+G+E
Sbjct: 1109 LIVDDNIVNRKVASEILNNAGCIISLAESGYQALDKVQAHS-YDLIFMDIQMPGMDGVET 1167
Query: 89 TREIRSMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TR I+ +GI+ IV +T+ + + +RE FM+ GLD +KP+ ++ +++ +
Sbjct: 1168 TRAIKGLGIEQLPPIVAMTAYSMKEDRERFMEEGLDDYVSKPVKAQTLIQKVQEYI 1223
>gi|347756849|ref|YP_004864411.1| his Kinase A domain-containing protein [Micavibrio aeruginosavorus
ARL-13]
gi|347589367|gb|AEP08409.1| his Kinase A domain protein [Micavibrio aeruginosavorus ARL-13]
Length = 1051
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E++ A+++ + KN+ L V+D R + L+ G V AENG+EA+D+ R
Sbjct: 786 ENNFSTARLVTSIKPKNI----LAVEDTPLNRDLLDALLRRAGHTVTHAENGQEAIDMLR 841
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIR-SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
+D++ +D +MPVM+G+EATR IR + + I I+ +T+ ++F AG+D
Sbjct: 842 HRRNYDLILMDIQMPVMDGMEATRIIREELELDIPIIALTAHALPKIAQSFYDAGMDDYL 901
Query: 126 TKPLSVDKI 134
KP D +
Sbjct: 902 IKPFDADML 910
>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 742
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+DD R L G +V A NG EAV++ + D+VF+D +MPVM+G+EA
Sbjct: 628 LLVEDDSVNRMAMERILGKFGCEVISAGNGLEAVEILKR-ENVDLVFMDVQMPVMDGMEA 686
Query: 89 TREIR-SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TR IR +G+ + IV +T+ +RE F+Q G+D +KP+ + ++
Sbjct: 687 TRIIREELGLDVPIVAMTAYAMAGDRERFLQGGMDSYVSKPVDMARL 733
>gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli UTI89]
gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
gi|386600098|ref|YP_006101604.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
IHE3034]
gi|417085482|ref|ZP_11952910.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli cloneA_i1]
gi|419947150|ref|ZP_14463510.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli HM605]
gi|422749497|ref|ZP_16803409.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
gi|422755642|ref|ZP_16809466.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
gi|422837727|ref|ZP_16885700.1| sensor kinase RcsC [Escherichia coli H397]
gi|432358563|ref|ZP_19601789.1| sensor kinase RcsC [Escherichia coli KTE4]
gi|432363296|ref|ZP_19606463.1| sensor kinase RcsC [Escherichia coli KTE5]
gi|432574298|ref|ZP_19810778.1| sensor kinase RcsC [Escherichia coli KTE55]
gi|432588546|ref|ZP_19824902.1| sensor kinase RcsC [Escherichia coli KTE58]
gi|432598205|ref|ZP_19834481.1| sensor kinase RcsC [Escherichia coli KTE62]
gi|432755033|ref|ZP_19989583.1| sensor kinase RcsC [Escherichia coli KTE22]
gi|432779158|ref|ZP_20013401.1| sensor kinase RcsC [Escherichia coli KTE59]
gi|432788105|ref|ZP_20022237.1| sensor kinase RcsC [Escherichia coli KTE65]
gi|432821554|ref|ZP_20055246.1| sensor kinase RcsC [Escherichia coli KTE118]
gi|432827686|ref|ZP_20061338.1| sensor kinase RcsC [Escherichia coli KTE123]
gi|433005676|ref|ZP_20194105.1| sensor kinase RcsC [Escherichia coli KTE227]
gi|433008259|ref|ZP_20196676.1| sensor kinase RcsC [Escherichia coli KTE229]
gi|433164093|ref|ZP_20348831.1| sensor kinase RcsC [Escherichia coli KTE179]
gi|433169198|ref|ZP_20353826.1| sensor kinase RcsC [Escherichia coli KTE180]
gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89]
gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
IHE3034]
gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
gi|355351254|gb|EHG00446.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli cloneA_i1]
gi|371610636|gb|EHN99164.1| sensor kinase RcsC [Escherichia coli H397]
gi|388411458|gb|EIL71634.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli HM605]
gi|430877218|gb|ELC00674.1| sensor kinase RcsC [Escherichia coli KTE4]
gi|430886515|gb|ELC09370.1| sensor kinase RcsC [Escherichia coli KTE5]
gi|431107896|gb|ELE12060.1| sensor kinase RcsC [Escherichia coli KTE55]
gi|431120879|gb|ELE23877.1| sensor kinase RcsC [Escherichia coli KTE58]
gi|431131072|gb|ELE33155.1| sensor kinase RcsC [Escherichia coli KTE62]
gi|431302242|gb|ELF91430.1| sensor kinase RcsC [Escherichia coli KTE22]
gi|431327311|gb|ELG14656.1| sensor kinase RcsC [Escherichia coli KTE59]
gi|431337822|gb|ELG24910.1| sensor kinase RcsC [Escherichia coli KTE65]
gi|431368401|gb|ELG54869.1| sensor kinase RcsC [Escherichia coli KTE118]
gi|431372935|gb|ELG58597.1| sensor kinase RcsC [Escherichia coli KTE123]
gi|431514663|gb|ELH92504.1| sensor kinase RcsC [Escherichia coli KTE227]
gi|431523589|gb|ELI00726.1| sensor kinase RcsC [Escherichia coli KTE229]
gi|431687398|gb|ELJ52949.1| sensor kinase RcsC [Escherichia coli KTE179]
gi|431688050|gb|ELJ53591.1| sensor kinase RcsC [Escherichia coli KTE180]
Length = 949
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R++ + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRSLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured
bacterium]
Length = 962
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMA--LKSLGFKVEVAENGKEAVDL 64
E+ KK +++ + L+VDDD IR + +++ L+ G + + ENGKEA++L
Sbjct: 824 EAQQKKLRMLHDKEMVLTDKTILMVDDD--IRNVFALSSVLEEKGMTIVIGENGKEALEL 881
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLD 122
++ D+V +D MP M+G EATR+IR + K+ I+ +T+ + +R+ + AG +
Sbjct: 882 LKNNPGIDLVLMDIMMPEMDGYEATRQIRKQTQFSKLPIIALTAKAMKGDRQKCIDAGAN 941
Query: 123 LCHTKPLSVDKILPLM 138
+KP+ +DK+L L+
Sbjct: 942 DYLSKPIDIDKLLSLL 957
>gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli S88]
gi|422360342|ref|ZP_16440976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 110-3]
gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli S88]
gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 110-3]
Length = 933
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R++ + L SLG++ + A +G +A+++ DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRSLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli APEC O1]
gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB
and RojN [Escherichia coli APEC O1]
Length = 933
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R++ + L SLG++ + A +G +A+++ DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRSLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA280]
gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA280]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 ESDDPANALPTTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 864 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 923 LSKPVTLDVI 932
>gi|304312857|ref|YP_003812455.1| Sensor histidine kinase [gamma proteobacterium HdN1]
gi|301798590|emb|CBL46820.1| Sensor histidine kinase [gamma proteobacterium HdN1]
Length = 682
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
+L+VDD+ + I AL+ LG +V NG+EA+D R ++D + +D EMP+M+G E
Sbjct: 553 SLLVDDNEVNQIIAKGALRRLGITADVTNNGEEAIDAVRDN-QYDFILMDCEMPIMDGFE 611
Query: 88 ATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
ATR IR+ G I+ +T+ +S+ +QAG+D KP D++ +++ + +
Sbjct: 612 ATRLIRAWEQKCGRHTTIIALTANSSDEIYRQCLQAGMDDFMQKPFRADQLQAILDRIAR 671
>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1259
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E+SS+ I P+ R+ L+VDD+ + R + L +GF+++ A NG EA+D ++
Sbjct: 1026 ENSSQSQVIGLQPNQPLYRI--LIVDDEPYNRQLLEQILTPVGFELQTANNGLEAIDQWQ 1083
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIR--------SMGIKIKIVGVTSLNSEAEREAFMQ 118
+ + D++++D +MPV++G EA R+IR S + I+ +T+ ++EA +Q
Sbjct: 1084 N-FQPDLIWMDLKMPVLDGYEAIRQIRQLEQQNQASASPRTVIIALTASAYNYQKEAALQ 1142
Query: 119 AGLDLCHTKPLSVDKILPLMEDLM 142
AG D KPL V IL M + +
Sbjct: 1143 AGCDDFVYKPLQVTVILNKMTEYL 1166
>gi|377576514|ref|ZP_09805498.1| colanic acid biosynthesis two-component histidine kinase RcsC
[Escherichia hermannii NBRC 105704]
gi|377542546|dbj|GAB50663.1| colanic acid biosynthesis two-component histidine kinase RcsC
[Escherichia hermannii NBRC 105704]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
S +N + LVVDD R + + L SLG++ + A +G +A+ + + DIV D
Sbjct: 820 SEQNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALSVL-AKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|386624915|ref|YP_006144643.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O7:K1 str. CE10]
gi|349738652|gb|AEQ13358.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O7:K1 str. CE10]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRCLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
proteobacterium NaphS2]
gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
proteobacterium NaphS2]
Length = 545
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNGIE 87
L+ +D+ + + M L GF+V++A NG+EAVD L S FD+V +D +MPV +G E
Sbjct: 425 LIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDGFE 484
Query: 88 ATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
AT+ IR G + I+ +T+ + RE + +G+D TKP+ ++++ +E M
Sbjct: 485 ATKAIREAGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQM 540
>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 872
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D + + S ++ LGF+V VAENG+ V++F S D++++D+ MPVM+GIEA
Sbjct: 670 LIVEDQLENQLLMSRLMEQLGFEVRVAENGRLGVEIF-SRWHPDLIWMDRRMPVMDGIEA 728
Query: 89 TREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TR IR + G ++KIV VT+ +R + +G+D KP ++I + ++
Sbjct: 729 TRLIRGLPGGREVKIVAVTASAFMEQRAEMLDSGMDEFVRKPYRFNEIYECLSRML 784
>gi|239907809|ref|YP_002954550.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797675|dbj|BAH76664.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 660
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+P L+V+D+ R AL LG+ V A NG+EA+ S + DI+ +
Sbjct: 518 EDPVFSPEEYTVLLVEDERINRLTTGRALSRLGYNVLEAINGQEALQTL-SREQADIILM 576
Query: 77 DKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D +MPVM+GIE T IR + +I +V +T+ SE +RE F++ G++ KP S+
Sbjct: 577 DIQMPVMDGIECTHHIRHGEVPGLSKRIPVVALTAYASEKDRERFLRLGMNDYLAKPHSI 636
Query: 132 DKILPLMEDLMK 143
D++ ++E +K
Sbjct: 637 DQLAEVLEANLK 648
>gi|239905559|ref|YP_002952298.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio
magneticus RS-1]
Length = 2025
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV DD R+I + L+ G+ V VA +G +A+++ R AKFD V +D +MPV++G+ A
Sbjct: 1902 LVEDDSISQRSIQRL-LEKAGYHVTVAGDGSQALEILRR-AKFDCVLMDVQMPVLDGVTA 1959
Query: 89 TREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
T+ IRS + I IV +T+ +++ F++AG+D +KP+S++K+
Sbjct: 1960 TKRIRSDVSGAVDRTIPIVALTAFAMSGDQDIFLKAGMDGYLSKPVSLEKM 2010
>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1519
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 2 MLGEGESSSKKAKIMENPSAKNL-RLFALVVDDDCFIRTIHSMAL-KSLGFKVEVAENGK 59
M E + A M N S + R+ L++ +D I +MAL K G +V V NG+
Sbjct: 1245 MSDEPYGAQPAAPAMPNGSRRTWKRMLRLLLAEDNAINQRLAMALLKKQGHQVVVVNNGR 1304
Query: 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREA 115
EA+ +G++FD V +D +MP M+G EAT IRS G+ I+ +T+ + +R+
Sbjct: 1305 EALAAM-NGSRFDAVLMDVQMPEMDGFEATAAIRSREAGTGVHTTIIAMTAHALKGDRDR 1363
Query: 116 FMQAGLDLCHTKPLSVDKILPLMEDL 141
+ AG+D +KPL ++ +L ++E L
Sbjct: 1364 CLDAGMDAYVSKPLRLEDLLGVLEGL 1389
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFIDKEMP 81
L L+VDD+ R I L + G K G+EA+ +G F +V +D MP
Sbjct: 1119 LPVLIVDDNATNRRILEEMLTNWGMKPTTVAGGREAIATLAEARGAGRPFALVLLDAMMP 1178
Query: 82 VMNGIEATREIR 93
M+G +I+
Sbjct: 1179 GMDGFTLAEQIK 1190
>gi|359448870|ref|ZP_09238382.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20480]
gi|358045307|dbj|GAA74631.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20480]
Length = 953
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALVVDD+ + I S L +A +G++A+D S FDIVF+D +MP M+G+E
Sbjct: 647 ALVVDDNKLNQEITSAMLSKFDLNTTIANDGRDAIDKV-SAQHFDIVFMDIQMPHMDGLE 705
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
AT+++R+ G + I+ +++ +++A AG+D KP+ D + ++ +K
Sbjct: 706 ATKQLRAKGYNMPIIALSAAVEPRDKKAAADAGMDDFLVKPIVFDALYESLDKHLK 761
>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 988
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+ +D+ + + + LK G V+VA NG EAVD+ RSGA +D++ +D +MP ++G
Sbjct: 872 LRVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDMARSGA-YDVILMDIQMPELDG 930
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
IEATR IR+ I I+ +T+ + + E ++AG+ KP+ + + ++
Sbjct: 931 IEATRRIRAFLPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAKPIDPETLFAALQ 984
>gi|386603759|ref|YP_006110059.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli UM146]
gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli UM146]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R++ + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRSLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|350563715|ref|ZP_08932536.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
gi|349778850|gb|EGZ33201.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
Length = 1276
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E +A+++E+ L L+V+D+ + + L +G +V +AENG+ AVDL
Sbjct: 904 QQEQDLMQARLVEHSQLHQLVGRVLLVEDNEINQEVAQAQLGQMGLQVTLAENGQRAVDL 963
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
+ FD+V +D +MPVM+G +ATR IR + I+ +T+ ++ + AG++
Sbjct: 964 VKQ-QDFDLVLMDVQMPVMDGYQATRAIRQFNADVPIIALTAAAMIEDKHKALAAGMNGH 1022
Query: 125 HTKPLSVDKI 134
KP++ D++
Sbjct: 1023 LGKPINSDEL 1032
>gi|358060722|dbj|GAA93493.1| hypothetical protein E5Q_00134 [Mixia osmundae IAM 14324]
Length = 1635
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+ S +++ P A N+ + L+V+D+ R I S L+ + F+V A +G E ++L
Sbjct: 1498 TPSASRGLVQAPEAANVHV--LLVEDNDINREIVSKLLQRMKFQVTTARDGHEVLELLEQ 1555
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK----IVGVTSLNSEAEREAFMQAGLDL 123
FD+ +D++MP M+G+EATR IR + +K I+ +T+ +RE MQAG+D
Sbjct: 1556 -QNFDVCLMDEQMPGMDGLEATRRIRQLSDPVKRRLRIIALTASAISGDRERCMQAGMDD 1614
Query: 124 CHTKPL 129
KP+
Sbjct: 1615 YLAKPV 1620
>gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
salsuginis DSM 16511]
gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
salsuginis DSM 16511]
Length = 800
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
+GE E S + K LVV+D+ + + L+ LG V++A NG EA
Sbjct: 502 MGEKELKSTTTTVQTRYHGK-----VLVVEDNIINQKLVKNILEGLGLDVDIANNGLEAF 556
Query: 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFM 117
+L R G +D++F+D +MPVMNGIEAT EI + IV +T+ + +RE F+
Sbjct: 557 EL-RRGNDYDLIFMDIQMPVMNGIEATHEILEYEEDEELPHVPIVALTANALKGDRERFL 615
Query: 118 QAGLDLCHTKPLSVDKILPLMEDLMKN 144
G+D +KP+ + +++ ++ +K+
Sbjct: 616 AEGMDEYISKPIEMSELIYILNKFLKD 642
>gi|290769939|gb|ADD61708.1| putative protein [uncultured organism]
Length = 221
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG--AKFDIVFIDKEMPVMNGI 86
L+V+D+ + I L+ GF VE A +G EAV ++D++ +D +MPVMNG
Sbjct: 99 LLVEDNELNQEIAQTILEDAGFMVETANDGVEAVKKMEQAVPGQYDLILMDIQMPVMNGY 158
Query: 87 EATREIRSMGIK----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
EA ++IRS+ + + IV +T+ E +RE +AG++ KP+S + ++ ++ +M
Sbjct: 159 EAAKQIRSLKNRETASVPIVAMTANAFEEDREKSYEAGMNGYLAKPVSAEALINTIDKIM 218
Query: 143 KNN 145
K+N
Sbjct: 219 KDN 221
>gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli SE11]
gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella flexneri 2a str. 2457T]
gi|384543882|ref|YP_005727945.1| Integral membrane sensor hybrid histidine kinase precursor
[Shigella flexneri 2002017]
gi|415853357|ref|ZP_11529366.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
gi|417723772|ref|ZP_12372577.1| sensor kinase protein rcsC [Shigella flexneri K-304]
gi|418257186|ref|ZP_12880870.1| his Kinase A domain protein [Shigella flexneri 6603-63]
gi|420340924|ref|ZP_14842433.1| sensor kinase protein RcsC [Shigella flexneri K-404]
gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase
acting on RcsB [Shigella flexneri 2a str. 2457T]
gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor
[Shigella flexneri 2002017]
gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304]
gi|391271454|gb|EIQ30328.1| sensor kinase protein RcsC [Shigella flexneri K-404]
gi|397897339|gb|EJL13748.1| his Kinase A domain protein [Shigella flexneri 6603-63]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|409041218|gb|EKM50704.1| hypothetical protein PHACADRAFT_188239 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1134
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 27/136 (19%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA------------------- 69
LVVDDD R + S L LG KV AENG+ A+DL + A
Sbjct: 977 LVVDDDPLTRKLMSRMLTRLGCKVTTAENGEIALDLILNPAARPTPSSEDTGSSGLVSND 1036
Query: 70 -------KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD 122
++ +VF+D +MPVM+G+EA ++R G K +VGVT +++ ++ AG+D
Sbjct: 1037 GQLTTDERYAVVFLDNQMPVMSGLEAVAKLRRRGRKDFVVGVTGNALLTDQQEYLDAGVD 1096
Query: 123 LCHTKPLSVDKILPLM 138
TKP+ ++K L M
Sbjct: 1097 HVLTKPV-LEKSLKAM 1111
>gi|417702861|ref|ZP_12351972.1| sensor kinase protein rcsC [Shigella flexneri K-218]
gi|417739053|ref|ZP_12387633.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|295090484|emb|CBK76591.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
gyrase B-, and HSP90-like ATPase./Response regulator
receiver domain. [Clostridium cf. saccharolyticum K10]
Length = 384
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
E E K+ +I+E R+ L+ +D+ I + LK V A NGKEAV+
Sbjct: 221 AEKEPEKKREQILETADLSGYRV--LLAEDNEINMEISTELLKMYNLDVTQAWNGKEAVE 278
Query: 64 LFRSGAK--FDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFM 117
LFR + FDI+ +D +MPVMNG EA R+IR+M I I+ VT+ + A
Sbjct: 279 LFREMGEGFFDIILMDMQMPVMNGCEAARQIRAMKRPDASTIPIIAVTANAFSEDIAATR 338
Query: 118 QAGLDLCHTKPLSVDKILPLMEDLMKN 144
AG++ +KP+ + +E L+K+
Sbjct: 339 NAGMNAHISKPIDFEIFRKTVESLLKD 365
>gi|432392731|ref|ZP_19635561.1| sensor kinase RcsC [Escherichia coli KTE21]
gi|430917887|gb|ELC38926.1| sensor kinase RcsC [Escherichia coli KTE21]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417671526|ref|ZP_12321015.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
Length = 933
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|450190784|ref|ZP_21890945.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli SEPT362]
gi|449320092|gb|EMD10129.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli SEPT362]
Length = 506
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 361 ESDDPANALPLTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 420
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 421 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 479
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 480 LSKPVTLDVI 489
>gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella flexneri 2a str. 301]
gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase
acting on RcsB [Shigella flexneri 2a str. 301]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|421683282|ref|ZP_16123078.1| his Kinase A domain protein [Shigella flexneri 1485-80]
gi|404339136|gb|EJZ65576.1| his Kinase A domain protein [Shigella flexneri 1485-80]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|345889287|ref|ZP_08840304.1| hypothetical protein HMPREF0178_03078 [Bilophila sp. 4_1_30]
gi|345039772|gb|EGW44081.1| hypothetical protein HMPREF0178_03078 [Bilophila sp. 4_1_30]
Length = 988
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+ +D+ + + + LK G V+VA NG EAVD+ RSGA +D++ +D +MP ++G
Sbjct: 872 LRVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDMARSGA-YDVILMDIQMPELDG 930
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
IEATR IR+ I I+ +T+ + + E ++AG+ KP+ + + ++
Sbjct: 931 IEATRRIRAFLPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAKPIDPETLFAALQ 984
>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1233
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+V+D+ R + L+S G +V +AENG+ A++ S A D+V +D +MPVM+G
Sbjct: 981 LRVLLVEDNRVNRVFATDLLESRGHEVILAENGRVALEYLVSHA-VDVVLMDIQMPVMDG 1039
Query: 86 IEATREIRSMGIKIK----IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+ ATR IR+ + I +VG+++ + ERE F+ AG D TKP+ V+ ++ +
Sbjct: 1040 LAATRAIRAGHLDIDPGLPVVGLSAYAMDQERERFLAAGFDDYITKPIDVETFFAVVARV 1099
Query: 142 M 142
+
Sbjct: 1100 L 1100
>gi|152989138|ref|YP_001348375.1| kinase sensor protein [Pseudomonas aeruginosa PA7]
gi|150964296|gb|ABR86321.1| kinase sensor protein [Pseudomonas aeruginosa PA7]
Length = 936
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
NL + LV +D+ + I L++LG VE+A +G++A+ SG FD+V D MP
Sbjct: 814 NLGIRILVAEDNAINQLILRDQLEALGCVVELAFDGRQALQRCLSG-DFDVVLTDINMPN 872
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
MNG + E+R G + IVG T+ ERE + AG+ C KP+ +D + + D++
Sbjct: 873 MNGYQLATELRRRGYRRPIVGATANAMREERERCLAAGMSDCLVKPVDLDSLQNCLIDIL 932
Query: 143 K 143
K
Sbjct: 933 K 933
>gi|334131187|ref|ZP_08504953.1| Putative histidine kinase [Methyloversatilis universalis FAM5]
gi|333443817|gb|EGK71778.1| Putative histidine kinase [Methyloversatilis universalis FAM5]
Length = 665
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 3 LGEGESSSKKAKIMENP----SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENG 58
L GES + A P +A RL L+V+D + + ++ L+ G +V VA NG
Sbjct: 507 LRRGESEAAPAATPVEPERGETATGRRLSVLLVEDHPVNQKVATVVLQRAGHRVTVAHNG 566
Query: 59 KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-----IKIKIVGVTSLNSEAER 113
EA++ G FD+V +D +MPVM G+EA R IR M + + I +T+ E +R
Sbjct: 567 IEAIEKVAEGG-FDLVLMDMQMPVMGGVEAARLIRQMEEELGRLPVPIFAMTANAQEEDR 625
Query: 114 EAFMQAGLDLCHTKPL 129
A ++AG++ TKPL
Sbjct: 626 TACLEAGMNDFLTKPL 641
>gi|192290268|ref|YP_001990873.1| CheA signal transduction histidine kinase [Rhodopseudomonas
palustris TIE-1]
gi|192284017|gb|ACF00398.1| CheA signal transduction histidine kinase [Rhodopseudomonas
palustris TIE-1]
Length = 937
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD F R + LK+ G+KV VA + E + + RSGA+FD++ D EMP MNG E
Sbjct: 810 LLVDDSAFFRNMLGPVLKAAGYKVRVATSAVEGLSVLRSGAQFDVILTDIEMPEMNGFEF 869
Query: 89 TREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGL 121
IRS + ++ ++SL S A E QAGL
Sbjct: 870 AEAIRSDTKMSNLPVIALSSLVSPAAIERGRQAGL 904
>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1233
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+ +D+ +T+ + L LG V VA NG EAV L+++G+ FD + +D +MP MN
Sbjct: 990 RLNLLLAEDNAVNQTLATRLLTKLGHTVTVANNGIEAVQLWQNGS-FDAILMDVDMPEMN 1048
Query: 85 GIEATREIRS------MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
G +ATR IR +G I+IV +T+ + RE + G+D TKP+ + + +
Sbjct: 1049 GYDATRCIREQEQQLGVGAHIRIVAMTAHAMQGAREECLLNGMDGYLTKPIDTEALWQEL 1108
Query: 139 EDLMK 143
+ L++
Sbjct: 1109 DSLVQ 1113
>gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella
dysenteriae 1012]
gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella
dysenteriae 1012]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432680829|ref|ZP_19916203.1| sensor kinase RcsC [Escherichia coli KTE143]
gi|431220226|gb|ELF17606.1| sensor kinase RcsC [Escherichia coli KTE143]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417298318|ref|ZP_12085557.1| sensor kinase protein RcsC [Escherichia coli 900105 (10e)]
gi|419255601|ref|ZP_13798120.1| his Kinase A domain protein [Escherichia coli DEC10A]
gi|419267672|ref|ZP_13810027.1| his Kinase A domain protein [Escherichia coli DEC10C]
gi|420122393|ref|ZP_14631369.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM10030]
gi|420128473|ref|ZP_14637029.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM10224]
gi|420134377|ref|ZP_14642486.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM9952]
gi|424754245|ref|ZP_18182163.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CFSAN001629]
gi|378100587|gb|EHW62283.1| his Kinase A domain protein [Escherichia coli DEC10A]
gi|378111500|gb|EHW73084.1| his Kinase A domain protein [Escherichia coli DEC10C]
gi|386257998|gb|EIJ13480.1| sensor kinase protein RcsC [Escherichia coli 900105 (10e)]
gi|394385592|gb|EJE63119.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM10224]
gi|394421632|gb|EJE95090.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM9952]
gi|394421978|gb|EJE95389.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM10030]
gi|421933735|gb|EKT91520.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CFSAN001629]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417308685|ref|ZP_12095527.1| Sensor kinase protein RcsC [Escherichia coli PCN033]
gi|338769718|gb|EGP24496.1| Sensor kinase protein RcsC [Escherichia coli PCN033]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|442592179|ref|ZP_21010159.1| Two-component sensor protein RcsC [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|441608332|emb|CCP99185.1| Two-component sensor protein RcsC [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432869586|ref|ZP_20090179.1| sensor kinase RcsC [Escherichia coli KTE147]
gi|431410172|gb|ELG93334.1| sensor kinase RcsC [Escherichia coli KTE147]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432750703|ref|ZP_19985307.1| sensor kinase RcsC [Escherichia coli KTE29]
gi|431296685|gb|ELF86396.1| sensor kinase RcsC [Escherichia coli KTE29]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432671291|ref|ZP_19906820.1| sensor kinase RcsC [Escherichia coli KTE119]
gi|431210210|gb|ELF08272.1| sensor kinase RcsC [Escherichia coli KTE119]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|39934697|ref|NP_946973.1| chemotaxis histidine kinase CheA [Rhodopseudomonas palustris
CGA009]
gi|39934746|ref|NP_947022.1| chemotaxis histidine kinase CheA [Rhodopseudomonas palustris
CGA009]
gi|192290213|ref|YP_001990818.1| CheA signal transduction histidine kinase [Rhodopseudomonas
palustris TIE-1]
gi|39648547|emb|CAE27068.1| multidomain chemotaxis histidine kinase CheA2 (Hpt, CheA, CheW, &
Resp. Reg. Rec. domains) [Rhodopseudomonas palustris
CGA009]
gi|39648596|emb|CAE27117.1| multidomain chemotaxis histidine kinase CheA3 (Hpt, CheA, CheW, &
Resp. Reg. Rec. domains) [Rhodopseudomonas palustris
CGA009]
gi|192283962|gb|ACF00343.1| CheA signal transduction histidine kinase [Rhodopseudomonas
palustris TIE-1]
Length = 937
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD F R + LK+ G+KV VA + E + + RSGA+FD++ D EMP MNG E
Sbjct: 810 LLVDDSAFFRNMLGPVLKAAGYKVRVATSAVEGLSVLRSGAQFDVILTDIEMPEMNGFEF 869
Query: 89 TREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGL 121
IRS + ++ ++SL S A E QAGL
Sbjct: 870 AEAIRSDTKMSNLPVIALSSLVSPAAIERGRQAGL 904
>gi|417291347|ref|ZP_12078628.1| sensor kinase protein RcsC [Escherichia coli B41]
gi|386253669|gb|EIJ03359.1| sensor kinase protein RcsC [Escherichia coli B41]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|419809949|ref|ZP_14334832.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O32:H37 str. P4]
gi|385157033|gb|EIF19026.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O32:H37 str. P4]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|422978997|ref|ZP_16977776.1| sensor kinase RcsC [Escherichia coli TA124]
gi|432851508|ref|ZP_20081893.1| sensor kinase RcsC [Escherichia coli KTE144]
gi|371592350|gb|EHN81258.1| sensor kinase RcsC [Escherichia coli TA124]
gi|431399846|gb|ELG83236.1| sensor kinase RcsC [Escherichia coli KTE144]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|416898283|ref|ZP_11927847.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
gi|422799525|ref|ZP_16848024.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain-containing protein
[Sulfurospirillum deleyianum DSM 6946]
gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 1068
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
K + LV +D+ + + L+ LG + + NG +A++ R FD++F+D M
Sbjct: 765 GKKFKANVLVAEDNEINQKLIRRTLEDLGLNITIVPNGLQALER-RKTDTFDMIFMDIAM 823
Query: 81 PVMNGIEATREI-----RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
PVM+GIEAT +I ++ I IV +T+ + +RE FM+ GLD TKP+ D I+
Sbjct: 824 PVMDGIEATHKILEYEEKNHQTHIPIVAITANALKGDRERFMKEGLDEYITKPIKKDNII 883
Query: 136 PLMEDLMKN 144
++ M N
Sbjct: 884 NILNVFMHN 892
>gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli IAI39]
gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli IAI39]
Length = 933
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
53638]
gi|420321099|ref|ZP_14822929.1| sensor kinase protein RcsC [Shigella flexneri 2850-71]
gi|424838595|ref|ZP_18263232.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella flexneri 5a str. M90T]
gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
53638]
gi|383467647|gb|EID62668.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella flexneri 5a str. M90T]
gi|391248392|gb|EIQ07634.1| sensor kinase protein RcsC [Shigella flexneri 2850-71]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella dysenteriae Sd197]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
Length = 792
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ R + + +SLG +VE NG E +D+F + A+F++V +D MPVMNG A
Sbjct: 670 LLVDDNAINRIVAAKFCQSLGIEVESCSNGAECLDMF-NPARFNLVILDNHMPVMNGPAA 728
Query: 89 TREIRS-MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
E+R G +I I G T+ RE F+ +G+D KPL
Sbjct: 729 ASELRKRYGEQILIFGWTADVISENREEFVASGVDTVIAKPL 770
>gi|145486126|ref|XP_001429070.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396160|emb|CAK61672.1| unnamed protein product [Paramecium tetraurelia]
Length = 880
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 12/117 (10%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-------FDIVFIDKEM 80
AL VDDD F + M L +GF++++A NG++A+++ ++ K + + +D +M
Sbjct: 750 ALSVDDDSFNQKALEMILGQMGFEIQLAYNGQQAIEIVKNAKKCCENCQLYAFILMDCQM 809
Query: 81 PVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
P+++G + T+ +R+M I I+G+T+ N + E E ++G+ TKPL++D
Sbjct: 810 PILDGWQTTKRLRNMMSGNIIPSIPIIGLTAFNGQYEIEKCYESGMQTVLTKPLNID 866
>gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella flexneri 5 str. 8401]
gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401]
Length = 949
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|453087568|gb|EMF15609.1| hypothetical protein SEPMUDRAFT_123858 [Mycosphaerella populorum
SO2202]
Length = 874
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
G E+ +++ + + A + R+ L+V+D+ + I L++ GF V A NGKEAV+
Sbjct: 717 GSDEARTEEQEEGLDAKATDSRISVLLVEDNIINQKIVHRKLEAKGFAVTTANNGKEAVE 776
Query: 64 LFR---SGAK-FDIVFIDKEMPVMNGIEATREIRSMGIK-----IKIVGVTSLNSEAERE 114
R +GAK F ++ +D+EMP+M+G ATR IR + + + I+GVT+ A+ +
Sbjct: 777 AIRKSSTGAKAFHVILMDQEMPLMSGNTATRAIRDLEKQSVIQYVPILGVTANVRGAQTD 836
Query: 115 AFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+++G+ TKP ++ + ++++L+
Sbjct: 837 EMIESGMQDVITKPYKIEDLAEIIKELV 864
>gi|423121349|ref|ZP_17109033.1| sensor protein rcsC [Klebsiella oxytoca 10-5246]
gi|376394184|gb|EHT06835.1| sensor protein rcsC [Klebsiella oxytoca 10-5246]
Length = 951
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E A N + LVVDD R + + L SLG++ A +G +A+ + S DIV
Sbjct: 816 ETQVASNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALGVL-SKQHIDIVLS 874
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 875 DVNMPNMDGYRLTQRIRELGMTLPVIGVTANALAEEKQRCLESGMDNCLSKPVTLDII 932
>gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli str. K-12 substr. MG1655]
gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli str. K-12 substr. DH10B]
gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli BW2952]
gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|386281288|ref|ZP_10058950.1| sensor kinase RcsC [Escherichia sp. 4_1_40B]
gi|386594999|ref|YP_006091399.1| histidine kinase [Escherichia coli DH1]
gi|386614831|ref|YP_006134497.1| sensor kinase RcsC [Escherichia coli UMNK88]
gi|404375569|ref|ZP_10980753.1| sensor kinase RcsC [Escherichia sp. 1_1_43]
gi|417259922|ref|ZP_12047445.1| sensor kinase protein RcsC [Escherichia coli 2.3916]
gi|417271117|ref|ZP_12058466.1| sensor kinase protein RcsC [Escherichia coli 2.4168]
gi|417277581|ref|ZP_12064904.1| sensor kinase protein RcsC [Escherichia coli 3.2303]
gi|417635151|ref|ZP_12285364.1| sensor kinase protein rcsC [Escherichia coli STEC_S1191]
gi|417947040|ref|ZP_12590243.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli XH140A]
gi|417975469|ref|ZP_12616268.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli XH001]
gi|418303614|ref|ZP_12915408.1| sensor kinase protein rcsC [Escherichia coli UMNF18]
gi|419143159|ref|ZP_13687897.1| sensor kinase protein RcsC [Escherichia coli DEC6A]
gi|419149155|ref|ZP_13693808.1| his Kinase A domain protein [Escherichia coli DEC6B]
gi|419154621|ref|ZP_13699184.1| sensor kinase protein RcsC [Escherichia coli DEC6C]
gi|419159895|ref|ZP_13704400.1| sensor kinase protein RcsC [Escherichia coli DEC6D]
gi|419165023|ref|ZP_13709480.1| his Kinase A domain protein [Escherichia coli DEC6E]
gi|419938873|ref|ZP_14455681.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 75]
gi|421778127|ref|ZP_16214710.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli AD30]
gi|422766828|ref|ZP_16820555.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
gi|422771935|ref|ZP_16825624.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
gi|422819605|ref|ZP_16867816.1| sensor kinase RcsC [Escherichia coli M919]
gi|425115632|ref|ZP_18517433.1| sensor kinase protein RcsC [Escherichia coli 8.0566]
gi|425283932|ref|ZP_18674971.1| sensor kinase protein RcsC [Escherichia coli TW00353]
gi|432417692|ref|ZP_19660296.1| sensor kinase RcsC [Escherichia coli KTE44]
gi|432534493|ref|ZP_19771468.1| sensor kinase RcsC [Escherichia coli KTE234]
gi|432564472|ref|ZP_19801054.1| sensor kinase RcsC [Escherichia coli KTE51]
gi|432576497|ref|ZP_19812957.1| sensor kinase RcsC [Escherichia coli KTE56]
gi|432627870|ref|ZP_19863846.1| sensor kinase RcsC [Escherichia coli KTE77]
gi|432686052|ref|ZP_19921349.1| sensor kinase RcsC [Escherichia coli KTE156]
gi|432692192|ref|ZP_19927420.1| sensor kinase RcsC [Escherichia coli KTE161]
gi|432737733|ref|ZP_19972491.1| sensor kinase RcsC [Escherichia coli KTE42]
gi|432875857|ref|ZP_20094017.1| sensor kinase RcsC [Escherichia coli KTE154]
gi|432955738|ref|ZP_20147616.1| sensor kinase RcsC [Escherichia coli KTE197]
gi|433048597|ref|ZP_20235950.1| sensor kinase RcsC [Escherichia coli KTE120]
gi|450245756|ref|ZP_21900713.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli S17]
gi|17433741|sp|P14376.3|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular
synthesis regulator component C
gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli str. K-12 substr. MG1655]
gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli str. K-12 substr. DH10B]
gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli BW2952]
gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1]
gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88]
gi|339415712|gb|AEJ57384.1| sensor kinase protein rcsC [Escherichia coli UMNF18]
gi|342361226|gb|EGU25370.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli XH140A]
gi|344195034|gb|EGV49105.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli XH001]
gi|345387434|gb|EGX17256.1| sensor kinase protein rcsC [Escherichia coli STEC_S1191]
gi|359332562|dbj|BAL39009.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli str. K-12 substr. MDS42]
gi|377992277|gb|EHV55424.1| his Kinase A domain protein [Escherichia coli DEC6B]
gi|377993672|gb|EHV56803.1| sensor kinase protein RcsC [Escherichia coli DEC6A]
gi|377997203|gb|EHV60310.1| sensor kinase protein RcsC [Escherichia coli DEC6C]
gi|378007239|gb|EHV70208.1| sensor kinase protein RcsC [Escherichia coli DEC6D]
gi|378011105|gb|EHV74050.1| his Kinase A domain protein [Escherichia coli DEC6E]
gi|385537018|gb|EIF83903.1| sensor kinase RcsC [Escherichia coli M919]
gi|386121427|gb|EIG70042.1| sensor kinase RcsC [Escherichia sp. 4_1_40B]
gi|386226645|gb|EII48947.1| sensor kinase protein RcsC [Escherichia coli 2.3916]
gi|386234817|gb|EII66793.1| sensor kinase protein RcsC [Escherichia coli 2.4168]
gi|386239649|gb|EII76576.1| sensor kinase protein RcsC [Escherichia coli 3.2303]
gi|388409251|gb|EIL69558.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 75]
gi|404291051|gb|EJZ47949.1| sensor kinase RcsC [Escherichia sp. 1_1_43]
gi|408201622|gb|EKI26771.1| sensor kinase protein RcsC [Escherichia coli TW00353]
gi|408456800|gb|EKJ80608.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli AD30]
gi|408568119|gb|EKK44157.1| sensor kinase protein RcsC [Escherichia coli 8.0566]
gi|430938936|gb|ELC59159.1| sensor kinase RcsC [Escherichia coli KTE44]
gi|431060129|gb|ELD69463.1| sensor kinase RcsC [Escherichia coli KTE234]
gi|431093258|gb|ELD98926.1| sensor kinase RcsC [Escherichia coli KTE51]
gi|431114532|gb|ELE18060.1| sensor kinase RcsC [Escherichia coli KTE56]
gi|431162481|gb|ELE62922.1| sensor kinase RcsC [Escherichia coli KTE77]
gi|431221834|gb|ELF19131.1| sensor kinase RcsC [Escherichia coli KTE156]
gi|431226540|gb|ELF23699.1| sensor kinase RcsC [Escherichia coli KTE161]
gi|431282193|gb|ELF73078.1| sensor kinase RcsC [Escherichia coli KTE42]
gi|431420129|gb|ELH02461.1| sensor kinase RcsC [Escherichia coli KTE154]
gi|431467124|gb|ELH47135.1| sensor kinase RcsC [Escherichia coli KTE197]
gi|431564368|gb|ELI37542.1| sensor kinase RcsC [Escherichia coli KTE120]
gi|449320011|gb|EMD10051.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli S17]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|406933709|gb|EKD68279.1| hypothetical protein ACD_47C00735G0003, partial [uncultured
bacterium]
Length = 194
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query: 15 IMENPSAKNLRLF-----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
I+E+P K+ F AL+V+D+ + L GF V++A +G +AV+++++
Sbjct: 55 IVESPDYKDEFDFGRNKRALLVEDNEMNQQHIKALLTRKGFSVDIACDGAKAVEMYKNNL 114
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
+DIV +D +MPVM+G+EATREIR++ G I+GVT+ +RE +++G+D
Sbjct: 115 -YDIVLMDIQMPVMDGLEATREIRAIEKQTGRYTGIIGVTAFAMRGDRERSLESGMDDYV 173
Query: 126 TKPLSVD 132
KP+ ++
Sbjct: 174 QKPVKIE 180
>gi|420336888|ref|ZP_14838460.1| sensor kinase protein RcsC [Shigella flexneri K-315]
gi|391261391|gb|EIQ20439.1| sensor kinase protein RcsC [Shigella flexneri K-315]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|420326136|ref|ZP_14827888.1| sensor kinase protein RcsC [Shigella flexneri CCH060]
gi|391250639|gb|EIQ09859.1| sensor kinase protein RcsC [Shigella flexneri CCH060]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417629485|ref|ZP_12279722.1| sensor kinase protein rcsC [Escherichia coli STEC_MHI813]
gi|345372232|gb|EGX04196.1| sensor kinase protein rcsC [Escherichia coli STEC_MHI813]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417597541|ref|ZP_12248182.1| sensor kinase protein rcsC [Escherichia coli 3030-1]
gi|345353529|gb|EGW85761.1| sensor kinase protein rcsC [Escherichia coli 3030-1]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|417744096|ref|ZP_12392622.1| his Kinase A domain protein [Shigella flexneri 2930-71]
gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|417734105|ref|ZP_12382756.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|416286543|ref|ZP_11648442.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
101-1]
gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|422786835|ref|ZP_16839574.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
gi|422790527|ref|ZP_16843231.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
101-1]
gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella boydii CDC 3083-94]
gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii
CDC 3083-94]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432948098|ref|ZP_20143254.1| sensor kinase RcsC [Escherichia coli KTE196]
gi|433043802|ref|ZP_20231297.1| sensor kinase RcsC [Escherichia coli KTE117]
gi|431458076|gb|ELH38413.1| sensor kinase RcsC [Escherichia coli KTE196]
gi|431555640|gb|ELI29479.1| sensor kinase RcsC [Escherichia coli KTE117]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432661456|ref|ZP_19897100.1| sensor kinase RcsC [Escherichia coli KTE111]
gi|431199193|gb|ELE97946.1| sensor kinase RcsC [Escherichia coli KTE111]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417713254|ref|ZP_12362221.1| sensor kinase protein rcsC [Shigella flexneri K-272]
gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|387612793|ref|YP_006115909.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
gi|425120357|ref|ZP_18522056.1| sensor kinase protein RcsC [Escherichia coli 8.0569]
gi|425273388|ref|ZP_18664800.1| sensor kinase protein RcsC [Escherichia coli TW15901]
gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
gi|408193170|gb|EKI18723.1| sensor kinase protein RcsC [Escherichia coli TW15901]
gi|408569110|gb|EKK45115.1| sensor kinase protein RcsC [Escherichia coli 8.0569]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197]
gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|425301082|ref|ZP_18690980.1| sensor protein RcsC [Escherichia coli 07798]
gi|408213468|gb|EKI37953.1| sensor protein RcsC [Escherichia coli 07798]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|406879817|gb|EKD28312.1| hypothetical protein ACD_79C00343G0002 [uncultured bacterium]
Length = 652
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
+ A + +P+ + L++ L+ +D+ R I L G+KVE A NG+E ++ +
Sbjct: 515 QRTADQINSPNTRPLKV--LLAEDNLINRKIAVAILNKYGYKVETAVNGQEVIEFLKR-E 571
Query: 70 KFDIVFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
KFD++ +D +MPVM+G+EAT IR+ + +I I+ +T+ E ++ F++AG++
Sbjct: 572 KFDVILMDVQMPVMDGLEATLIIRNSNEKLLDSQIPIIALTAHAFEEDKAKFIKAGMNSF 631
Query: 125 HTKPLSVDKILPLMEDLMK 143
+KP + ++++ +E ++K
Sbjct: 632 ISKPFNKEQLVHEIERVVK 650
>gi|420379234|ref|ZP_14878722.1| sensor kinase protein RcsC [Shigella dysenteriae 225-75]
gi|391305388|gb|EIQ63174.1| sensor kinase protein RcsC [Shigella dysenteriae 225-75]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|420348103|ref|ZP_14849492.1| sensor kinase protein RcsC [Shigella boydii 965-58]
gi|391269106|gb|EIQ28018.1| sensor kinase protein RcsC [Shigella boydii 965-58]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417138890|ref|ZP_11982417.1| sensor kinase protein RcsC [Escherichia coli 97.0259]
gi|386157535|gb|EIH13875.1| sensor kinase protein RcsC [Escherichia coli 97.0259]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|417115714|ref|ZP_11966850.1| sensor kinase protein RcsC [Escherichia coli 1.2741]
gi|386141133|gb|EIG82285.1| sensor kinase protein RcsC [Escherichia coli 1.2741]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|419805509|ref|ZP_14330643.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
AI27]
gi|384471466|gb|EIE55543.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
AI27]
Length = 926
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 797 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 855
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 856 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 909
>gi|419381489|ref|ZP_13922440.1| his Kinase A domain protein [Escherichia coli DEC14C]
gi|378227856|gb|EHX88024.1| his Kinase A domain protein [Escherichia coli DEC14C]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|419376154|ref|ZP_13917178.1| his Kinase A domain protein [Escherichia coli DEC14B]
gi|419386795|ref|ZP_13927673.1| his Kinase A domain protein [Escherichia coli DEC14D]
gi|378218877|gb|EHX79146.1| his Kinase A domain protein [Escherichia coli DEC14B]
gi|378231322|gb|EHX91433.1| his Kinase A domain protein [Escherichia coli DEC14D]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|419329642|ref|ZP_13871246.1| sensor kinase protein RcsC [Escherichia coli DEC12C]
gi|378169958|gb|EHX30844.1| sensor kinase protein RcsC [Escherichia coli DEC12C]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|419175709|ref|ZP_13719547.1| his Kinase A domain protein [Escherichia coli DEC7B]
gi|378033112|gb|EHV95692.1| his Kinase A domain protein [Escherichia coli DEC7B]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|422830091|ref|ZP_16878252.1| sensor kinase RcsC [Escherichia coli B093]
gi|371607023|gb|EHN95607.1| sensor kinase RcsC [Escherichia coli B093]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417618814|ref|ZP_12269228.1| sensor kinase protein rcsC [Escherichia coli G58-1]
gi|345375528|gb|EGX07475.1| sensor kinase protein rcsC [Escherichia coli G58-1]
Length = 926
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 797 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 855
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 856 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 909
>gi|417828611|ref|ZP_12475164.1| his Kinase A domain protein [Shigella flexneri J1713]
gi|418041873|ref|ZP_12680087.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli W26]
gi|335574987|gb|EGM61299.1| his Kinase A domain protein [Shigella flexneri J1713]
gi|383475276|gb|EID67241.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli W26]
Length = 926
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 797 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 855
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 856 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 909
>gi|417708262|ref|ZP_12357295.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417729141|ref|ZP_12377839.1| sensor kinase protein rcsC [Shigella flexneri K-671]
gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671]
Length = 880
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 751 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 809
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 810 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 863
>gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli M718]
gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli M718]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412]
gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302]
gi|417587234|ref|ZP_12238004.1| sensor kinase protein rcsC [Escherichia coli STEC_C165-02]
gi|419932863|ref|ZP_14450144.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 576-1]
gi|432354157|ref|ZP_19597430.1| sensor kinase RcsC [Escherichia coli KTE2]
gi|432402509|ref|ZP_19645261.1| sensor kinase RcsC [Escherichia coli KTE26]
gi|432426773|ref|ZP_19669274.1| sensor kinase RcsC [Escherichia coli KTE181]
gi|432461239|ref|ZP_19703388.1| sensor kinase RcsC [Escherichia coli KTE204]
gi|432476446|ref|ZP_19718445.1| sensor kinase RcsC [Escherichia coli KTE208]
gi|432489894|ref|ZP_19731768.1| sensor kinase RcsC [Escherichia coli KTE213]
gi|432518288|ref|ZP_19755476.1| sensor kinase RcsC [Escherichia coli KTE228]
gi|432538409|ref|ZP_19775311.1| sensor kinase RcsC [Escherichia coli KTE235]
gi|432632004|ref|ZP_19867930.1| sensor kinase RcsC [Escherichia coli KTE80]
gi|432641718|ref|ZP_19877552.1| sensor kinase RcsC [Escherichia coli KTE83]
gi|432666613|ref|ZP_19902194.1| sensor kinase RcsC [Escherichia coli KTE116]
gi|432771180|ref|ZP_20005519.1| sensor kinase RcsC [Escherichia coli KTE50]
gi|432775302|ref|ZP_20009581.1| sensor kinase RcsC [Escherichia coli KTE54]
gi|432839902|ref|ZP_20073388.1| sensor kinase RcsC [Escherichia coli KTE140]
gi|432887199|ref|ZP_20101273.1| sensor kinase RcsC [Escherichia coli KTE158]
gi|432913397|ref|ZP_20119094.1| sensor kinase RcsC [Escherichia coli KTE190]
gi|432962386|ref|ZP_20152039.1| sensor kinase RcsC [Escherichia coli KTE202]
gi|433019286|ref|ZP_20207507.1| sensor kinase RcsC [Escherichia coli KTE105]
gi|433053826|ref|ZP_20241006.1| sensor kinase RcsC [Escherichia coli KTE122]
gi|433063680|ref|ZP_20250603.1| sensor kinase RcsC [Escherichia coli KTE125]
gi|433068531|ref|ZP_20255321.1| sensor kinase RcsC [Escherichia coli KTE128]
gi|433159260|ref|ZP_20344098.1| sensor kinase RcsC [Escherichia coli KTE177]
gi|433179073|ref|ZP_20363473.1| sensor kinase RcsC [Escherichia coli KTE82]
gi|433203835|ref|ZP_20387611.1| sensor kinase RcsC [Escherichia coli KTE95]
gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412]
gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302]
gi|345336370|gb|EGW68806.1| sensor kinase protein rcsC [Escherichia coli STEC_C165-02]
gi|388415374|gb|EIL75305.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 576-1]
gi|430875330|gb|ELB98872.1| sensor kinase RcsC [Escherichia coli KTE2]
gi|430924980|gb|ELC45653.1| sensor kinase RcsC [Escherichia coli KTE26]
gi|430955705|gb|ELC74487.1| sensor kinase RcsC [Escherichia coli KTE181]
gi|430988929|gb|ELD05398.1| sensor kinase RcsC [Escherichia coli KTE204]
gi|431005614|gb|ELD20635.1| sensor kinase RcsC [Escherichia coli KTE208]
gi|431020511|gb|ELD33856.1| sensor kinase RcsC [Escherichia coli KTE213]
gi|431050910|gb|ELD60586.1| sensor kinase RcsC [Escherichia coli KTE228]
gi|431069298|gb|ELD77627.1| sensor kinase RcsC [Escherichia coli KTE235]
gi|431170204|gb|ELE70398.1| sensor kinase RcsC [Escherichia coli KTE80]
gi|431181601|gb|ELE81463.1| sensor kinase RcsC [Escherichia coli KTE83]
gi|431200907|gb|ELE99625.1| sensor kinase RcsC [Escherichia coli KTE116]
gi|431314877|gb|ELG02809.1| sensor kinase RcsC [Escherichia coli KTE50]
gi|431318341|gb|ELG06107.1| sensor kinase RcsC [Escherichia coli KTE54]
gi|431389075|gb|ELG72790.1| sensor kinase RcsC [Escherichia coli KTE140]
gi|431416197|gb|ELG98684.1| sensor kinase RcsC [Escherichia coli KTE158]
gi|431439697|gb|ELH21030.1| sensor kinase RcsC [Escherichia coli KTE190]
gi|431474177|gb|ELH53999.1| sensor kinase RcsC [Escherichia coli KTE202]
gi|431531187|gb|ELI07856.1| sensor kinase RcsC [Escherichia coli KTE105]
gi|431570226|gb|ELI43152.1| sensor kinase RcsC [Escherichia coli KTE122]
gi|431581674|gb|ELI54121.1| sensor kinase RcsC [Escherichia coli KTE125]
gi|431584158|gb|ELI56145.1| sensor kinase RcsC [Escherichia coli KTE128]
gi|431677899|gb|ELJ43912.1| sensor kinase RcsC [Escherichia coli KTE177]
gi|431701438|gb|ELJ66357.1| sensor kinase RcsC [Escherichia coli KTE82]
gi|431721384|gb|ELJ85379.1| sensor kinase RcsC [Escherichia coli KTE95]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA143]
gi|387607910|ref|YP_006096766.1| two-component system sensor kinase [Escherichia coli 042]
gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042]
gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA143]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|260856206|ref|YP_003230097.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. 11368]
gi|415793620|ref|ZP_11496237.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
gi|425380273|ref|ZP_18764313.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
EC1865]
gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with
RcsB and YojN [Escherichia coli O26:H11 str. 11368]
gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
gi|408296640|gb|EKJ14866.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
EC1865]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
autotrophicum HRM2]
gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
autotrophicum HRM2]
Length = 1316
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
K LR+ LVV+D+ + + LK +GF NG +A++ +D+VF+D +M
Sbjct: 1053 GKGLRI--LVVEDNITNQLVALGILKKMGFAAHAVTNGAKAIEALDGATHYDLVFMDMQM 1110
Query: 81 PVMNGIEATREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
PVMNG++ATR IR K I IV +T+ E +R+ ++AG++ +KP++ ++
Sbjct: 1111 PVMNGLDATRAIRDPDSKVYDHDIPIVAMTANAMEEDRKHCLKAGMNDYLSKPINPSALV 1170
Query: 136 PLMEDLMKN 144
++E + N
Sbjct: 1171 KVLEKWLVN 1179
>gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia
albertii TW07627]
gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia
albertii TW07627]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4501]
gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. TW14588]
gi|421831755|ref|ZP_16267042.1| response regulator [Escherichia coli PA7]
gi|423725814|ref|ZP_17699924.1| response regulator [Escherichia coli PA31]
gi|424122775|ref|ZP_17856123.1| response regulator [Escherichia coli PA5]
gi|424148198|ref|ZP_17879596.1| response regulator [Escherichia coli PA15]
gi|424450458|ref|ZP_17902183.1| response regulator [Escherichia coli PA32]
gi|424456654|ref|ZP_17907816.1| response regulator [Escherichia coli PA33]
gi|425126801|ref|ZP_18527997.1| sensor kinase protein RcsC [Escherichia coli 8.0586]
gi|425212667|ref|ZP_18608088.1| response regulator [Escherichia coli PA4]
gi|425218783|ref|ZP_18613774.1| response regulator [Escherichia coli PA23]
gi|425225311|ref|ZP_18619812.1| response regulator [Escherichia coli PA49]
gi|429079174|ref|ZP_19142321.1| sensor kinase protein RcsC [Escherichia coli 99.0713]
gi|444986279|ref|ZP_21303072.1| sensor kinase protein RcsC [Escherichia coli PA11]
gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4501]
gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. TW14588]
gi|390681205|gb|EIN57009.1| response regulator [Escherichia coli PA5]
gi|390701073|gb|EIN75328.1| response regulator [Escherichia coli PA15]
gi|390743019|gb|EIO14006.1| response regulator [Escherichia coli PA31]
gi|390743404|gb|EIO14381.1| response regulator [Escherichia coli PA32]
gi|390745907|gb|EIO16687.1| response regulator [Escherichia coli PA33]
gi|408064127|gb|EKG98609.1| response regulator [Escherichia coli PA7]
gi|408127713|gb|EKH58150.1| response regulator [Escherichia coli PA4]
gi|408138804|gb|EKH68460.1| response regulator [Escherichia coli PA23]
gi|408140441|gb|EKH69957.1| response regulator [Escherichia coli PA49]
gi|408570326|gb|EKK46306.1| sensor kinase protein RcsC [Escherichia coli 8.0586]
gi|427329504|gb|EKW90830.1| sensor kinase protein RcsC [Escherichia coli 99.0713]
gi|444593984|gb|ELV69188.1| sensor kinase protein RcsC [Escherichia coli PA11]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli SMS-3-5]
gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
SMS-3-5]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella sonnei Ss046]
gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
B7A]
gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
E22]
gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
E110019]
gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
B171]
gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185]
gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088]
gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
W]
gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA271]
gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli H591]
gi|378712333|ref|YP_005277226.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
KO11FL]
gi|383179187|ref|YP_005457192.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella sonnei 53G]
gi|386609609|ref|YP_006125095.1| hybrid sensory kinase in two-component regulatory system with RcsB
and RcsD [Escherichia coli W]
gi|386700795|ref|YP_006164632.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli KO11FL]
gi|386710093|ref|YP_006173814.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli W]
gi|407470110|ref|YP_006783447.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481227|ref|YP_006778376.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 2011C-3493]
gi|410481774|ref|YP_006769320.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414576829|ref|ZP_11434011.1| sensor kinase protein RcsC [Shigella sonnei 3233-85]
gi|415798393|ref|ZP_11498411.1| sensor kinase protein rcsC [Escherichia coli E128010]
gi|415829084|ref|ZP_11515467.1| sensor kinase protein rcsC [Escherichia coli OK1357]
gi|415844512|ref|ZP_11524254.1| sensor kinase protein rcsC [Shigella sonnei 53G]
gi|416343781|ref|ZP_11677681.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
gi|417122453|ref|ZP_11971711.1| sensor kinase protein RcsC [Escherichia coli 97.0246]
gi|417145876|ref|ZP_11986834.1| sensor kinase protein RcsC [Escherichia coli 1.2264]
gi|417154623|ref|ZP_11992752.1| sensor kinase protein RcsC [Escherichia coli 96.0497]
gi|417163494|ref|ZP_11998682.1| sensor kinase protein RcsC [Escherichia coli 99.0741]
gi|417173795|ref|ZP_12003591.1| sensor kinase protein RcsC [Escherichia coli 3.2608]
gi|417182770|ref|ZP_12009327.1| sensor kinase protein RcsC [Escherichia coli 93.0624]
gi|417192260|ref|ZP_12014360.1| sensor kinase protein RcsC [Escherichia coli 4.0522]
gi|417213707|ref|ZP_12022748.1| sensor kinase protein RcsC [Escherichia coli JB1-95]
gi|417221106|ref|ZP_12024546.1| sensor kinase protein RcsC [Escherichia coli 96.154]
gi|417231551|ref|ZP_12032949.1| sensor kinase protein RcsC [Escherichia coli 5.0959]
gi|417238237|ref|ZP_12035968.1| sensor kinase protein RcsC [Escherichia coli 9.0111]
gi|417254237|ref|ZP_12045993.1| sensor kinase protein RcsC [Escherichia coli 4.0967]
gi|417269592|ref|ZP_12056952.1| sensor kinase protein RcsC [Escherichia coli 3.3884]
gi|417581745|ref|ZP_12232547.1| sensor kinase protein rcsC [Escherichia coli STEC_B2F1]
gi|417592498|ref|ZP_12243195.1| sensor kinase protein rcsC [Escherichia coli 2534-86]
gi|417602832|ref|ZP_12253402.1| sensor kinase protein rcsC [Escherichia coli STEC_94C]
gi|417608868|ref|ZP_12259371.1| sensor kinase protein rcsC [Escherichia coli STEC_DG131-3]
gi|417667641|ref|ZP_12317186.1| sensor kinase protein rcsC [Escherichia coli STEC_O31]
gi|417805786|ref|ZP_12452735.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. LB226692]
gi|417833525|ref|ZP_12479973.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 01-09591]
gi|417863453|ref|ZP_12508501.1| rcsC [Escherichia coli O104:H4 str. C227-11]
gi|418266616|ref|ZP_12886097.1| his Kinase A domain protein [Shigella sonnei str. Moseley]
gi|418945044|ref|ZP_13497985.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H43 str. T22]
gi|419170894|ref|ZP_13714780.1| sensor kinase protein RcsC [Escherichia coli DEC7A]
gi|419181539|ref|ZP_13725152.1| his Kinase A domain protein [Escherichia coli DEC7C]
gi|419186979|ref|ZP_13730493.1| his Kinase A domain protein [Escherichia coli DEC7D]
gi|419192271|ref|ZP_13735724.1| sensor kinase protein RcsC [Escherichia coli DEC7E]
gi|419197703|ref|ZP_13741091.1| sensor kinase protein RcsC [Escherichia coli DEC8A]
gi|419204068|ref|ZP_13747251.1| his Kinase A domain protein [Escherichia coli DEC8B]
gi|419210395|ref|ZP_13753474.1| his Kinase A domain protein [Escherichia coli DEC8C]
gi|419216270|ref|ZP_13759272.1| his Kinase A domain protein [Escherichia coli DEC8D]
gi|419222211|ref|ZP_13765134.1| his Kinase A domain protein [Escherichia coli DEC8E]
gi|419227409|ref|ZP_13770267.1| his Kinase A domain protein [Escherichia coli DEC9A]
gi|419233038|ref|ZP_13775815.1| his Kinase A domain protein [Escherichia coli DEC9B]
gi|419238492|ref|ZP_13781213.1| his Kinase A domain protein [Escherichia coli DEC9C]
gi|419243942|ref|ZP_13786581.1| his Kinase A domain protein [Escherichia coli DEC9D]
gi|419249766|ref|ZP_13792350.1| his Kinase A domain protein [Escherichia coli DEC9E]
gi|419261805|ref|ZP_13804227.1| his Kinase A domain protein [Escherichia coli DEC10B]
gi|419273334|ref|ZP_13815633.1| his Kinase A domain protein [Escherichia coli DEC10D]
gi|419284824|ref|ZP_13827000.1| his Kinase A domain protein [Escherichia coli DEC10F]
gi|419290167|ref|ZP_13832259.1| his Kinase A domain protein [Escherichia coli DEC11A]
gi|419295494|ref|ZP_13837540.1| his Kinase A domain protein [Escherichia coli DEC11B]
gi|419300953|ref|ZP_13842952.1| sensor kinase protein RcsC [Escherichia coli DEC11C]
gi|419307086|ref|ZP_13848986.1| sensor kinase protein RcsC [Escherichia coli DEC11D]
gi|419312092|ref|ZP_13853954.1| sensor kinase protein RcsC [Escherichia coli DEC11E]
gi|419317503|ref|ZP_13859306.1| sensor kinase protein RcsC [Escherichia coli DEC12A]
gi|419323678|ref|ZP_13865371.1| his Kinase A domain protein [Escherichia coli DEC12B]
gi|419335206|ref|ZP_13876739.1| his Kinase A domain protein [Escherichia coli DEC12D]
gi|419340673|ref|ZP_13882137.1| his Kinase A domain protein [Escherichia coli DEC12E]
gi|419345884|ref|ZP_13887259.1| his Kinase A domain protein [Escherichia coli DEC13A]
gi|419355715|ref|ZP_13896973.1| his Kinase A domain protein [Escherichia coli DEC13C]
gi|419360805|ref|ZP_13902023.1| his Kinase A domain protein [Escherichia coli DEC13D]
gi|419365702|ref|ZP_13906864.1| his Kinase A domain protein [Escherichia coli DEC13E]
gi|419370727|ref|ZP_13911846.1| sensor kinase protein RcsC [Escherichia coli DEC14A]
gi|419392315|ref|ZP_13933127.1| his Kinase A domain protein [Escherichia coli DEC15A]
gi|419397355|ref|ZP_13938123.1| his Kinase A domain protein [Escherichia coli DEC15B]
gi|419402697|ref|ZP_13943421.1| his Kinase A domain protein [Escherichia coli DEC15C]
gi|419407814|ref|ZP_13948503.1| his Kinase A domain protein [Escherichia coli DEC15D]
gi|419413402|ref|ZP_13954054.1| his Kinase A domain protein [Escherichia coli DEC15E]
gi|419862568|ref|ZP_14385162.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O103:H25 str. CVM9340]
gi|419870591|ref|ZP_14392684.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O103:H2 str. CVM9450]
gi|419877046|ref|ZP_14398704.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9534]
gi|419883264|ref|ZP_14404396.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9545]
gi|419895824|ref|ZP_14415609.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CVM9574]
gi|419899931|ref|ZP_14419412.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM9942]
gi|419909098|ref|ZP_14427732.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
O26:H11 str. CVM10026]
gi|419922108|ref|ZP_14440131.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 541-15]
gi|419930924|ref|ZP_14448515.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 541-1]
gi|419950527|ref|ZP_14466739.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli CUMT8]
gi|420089895|ref|ZP_14601675.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CVM9602]
gi|420095754|ref|ZP_14607234.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CVM9634]
gi|420102272|ref|ZP_14613296.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9455]
gi|420109991|ref|ZP_14620057.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9553]
gi|420118030|ref|ZP_14627374.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM10021]
gi|420359294|ref|ZP_14860268.1| sensor kinase protein RcsC [Shigella sonnei 3226-85]
gi|420364334|ref|ZP_14865217.1| his Kinase A domain protein [Shigella sonnei 4822-66]
gi|420386284|ref|ZP_14885634.1| sensor kinase protein RcsC [Escherichia coli EPECa12]
gi|422762266|ref|ZP_16816023.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
gi|422777511|ref|ZP_16831163.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
gi|422834616|ref|ZP_16882677.1| sensor kinase RcsC [Escherichia coli E101]
gi|422956409|ref|ZP_16968883.1| sensor kinase RcsC [Escherichia coli H494]
gi|422988343|ref|ZP_16979116.1| sensor kinase RcsC [Escherichia coli O104:H4 str. C227-11]
gi|422995234|ref|ZP_16985998.1| sensor kinase RcsC [Escherichia coli O104:H4 str. C236-11]
gi|423000309|ref|ZP_16991063.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 09-7901]
gi|423003978|ref|ZP_16994724.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 04-8351]
gi|423010551|ref|ZP_17001285.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-3677]
gi|423019778|ref|ZP_17010487.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4404]
gi|423024945|ref|ZP_17015642.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4522]
gi|423030766|ref|ZP_17021454.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4623]
gi|423038592|ref|ZP_17029266.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043711|ref|ZP_17034378.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423045440|ref|ZP_17036100.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423053979|ref|ZP_17042786.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060954|ref|ZP_17049750.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C5]
gi|424757468|ref|ZP_18185205.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CFSAN001630]
gi|424772676|ref|ZP_18199770.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CFSAN001632]
gi|425305947|ref|ZP_18695658.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
N1]
gi|429719823|ref|ZP_19254754.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-9450]
gi|429771705|ref|ZP_19303728.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02030]
gi|429781637|ref|ZP_19313566.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02033-1]
gi|429785377|ref|ZP_19317275.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02092]
gi|429791266|ref|ZP_19323123.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02093]
gi|429797093|ref|ZP_19328901.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02281]
gi|429798691|ref|ZP_19330492.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02318]
gi|429807204|ref|ZP_19338931.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02913]
gi|429812104|ref|ZP_19343790.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-03439]
gi|429817624|ref|ZP_19349265.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-04080]
gi|429822835|ref|ZP_19354433.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-03943]
gi|429904215|ref|ZP_19370194.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-9990]
gi|429908352|ref|ZP_19374316.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-9941]
gi|429914223|ref|ZP_19380171.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4984]
gi|429919254|ref|ZP_19385186.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-5604]
gi|429925073|ref|ZP_19390987.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4986]
gi|429929010|ref|ZP_19394912.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935549|ref|ZP_19401435.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4988]
gi|429941229|ref|ZP_19407103.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-5603]
gi|429943909|ref|ZP_19409772.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-6006]
gi|429951509|ref|ZP_19417355.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec12-0465]
gi|429954821|ref|ZP_19420653.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec12-0466]
gi|432377390|ref|ZP_19620381.1| sensor kinase RcsC [Escherichia coli KTE12]
gi|432450381|ref|ZP_19692646.1| sensor kinase RcsC [Escherichia coli KTE193]
gi|432481590|ref|ZP_19723547.1| sensor kinase RcsC [Escherichia coli KTE210]
gi|432675335|ref|ZP_19910794.1| sensor kinase RcsC [Escherichia coli KTE142]
gi|432806379|ref|ZP_20040307.1| sensor kinase RcsC [Escherichia coli KTE91]
gi|432809872|ref|ZP_20043765.1| sensor kinase RcsC [Escherichia coli KTE101]
gi|432832248|ref|ZP_20065822.1| sensor kinase RcsC [Escherichia coli KTE135]
gi|432835207|ref|ZP_20068746.1| sensor kinase RcsC [Escherichia coli KTE136]
gi|432862812|ref|ZP_20087101.1| sensor kinase RcsC [Escherichia coli KTE146]
gi|432935013|ref|ZP_20134450.1| sensor kinase RcsC [Escherichia coli KTE184]
gi|432968327|ref|ZP_20157242.1| sensor kinase RcsC [Escherichia coli KTE203]
gi|433034060|ref|ZP_20221776.1| sensor kinase RcsC [Escherichia coli KTE112]
gi|433092609|ref|ZP_20278876.1| sensor kinase RcsC [Escherichia coli KTE138]
gi|433130790|ref|ZP_20316225.1| sensor kinase RcsC [Escherichia coli KTE163]
gi|433135452|ref|ZP_20320796.1| sensor kinase RcsC [Escherichia coli KTE166]
gi|433194300|ref|ZP_20378290.1| sensor kinase RcsC [Escherichia coli KTE90]
gi|443618298|ref|YP_007382154.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli APEC O78]
gi|450218568|ref|ZP_21895942.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O08]
gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
B7A]
gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
E22]
gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
E110019]
gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
B171]
gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088]
gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185]
gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
W]
gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB
and RcsD [Escherichia coli W]
gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010]
gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G]
gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli OK1357]
gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
KO11FL]
gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA271]
gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli H591]
gi|340734407|gb|EGR63537.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 01-09591]
gi|340739698|gb|EGR73930.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. LB226692]
gi|341916742|gb|EGT66359.1| rcsC [Escherichia coli O104:H4 str. C227-11]
gi|345337516|gb|EGW69948.1| sensor kinase protein rcsC [Escherichia coli STEC_B2F1]
gi|345338835|gb|EGW71262.1| sensor kinase protein rcsC [Escherichia coli 2534-86]
gi|345350498|gb|EGW82773.1| sensor kinase protein rcsC [Escherichia coli STEC_94C]
gi|345358077|gb|EGW90265.1| sensor kinase protein rcsC [Escherichia coli STEC_DG131-3]
gi|354862069|gb|EHF22507.1| sensor kinase RcsC [Escherichia coli O104:H4 str. C236-11]
gi|354867354|gb|EHF27776.1| sensor kinase RcsC [Escherichia coli O104:H4 str. C227-11]
gi|354869425|gb|EHF29835.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 04-8351]
gi|354873280|gb|EHF33657.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 09-7901]
gi|354880034|gb|EHF40370.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-3677]
gi|354889458|gb|EHF49707.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4404]
gi|354893053|gb|EHF53257.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4522]
gi|354895190|gb|EHF55379.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354897464|gb|EHF57622.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4623]
gi|354898825|gb|EHF58976.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354912876|gb|EHF72874.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915881|gb|EHF75857.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917796|gb|EHF77758.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-4632 C4]
gi|371599944|gb|EHN88722.1| sensor kinase RcsC [Escherichia coli H494]
gi|371601408|gb|EHN90158.1| sensor kinase RcsC [Escherichia coli E101]
gi|375319639|gb|EHS65745.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H43 str. T22]
gi|378014938|gb|EHV77835.1| sensor kinase protein RcsC [Escherichia coli DEC7A]
gi|378023172|gb|EHV85849.1| his Kinase A domain protein [Escherichia coli DEC7C]
gi|378028971|gb|EHV91587.1| his Kinase A domain protein [Escherichia coli DEC7D]
gi|378038335|gb|EHW00850.1| sensor kinase protein RcsC [Escherichia coli DEC7E]
gi|378047235|gb|EHW09607.1| sensor kinase protein RcsC [Escherichia coli DEC8A]
gi|378048788|gb|EHW11141.1| his Kinase A domain protein [Escherichia coli DEC8B]
gi|378053851|gb|EHW16143.1| his Kinase A domain protein [Escherichia coli DEC8C]
gi|378062754|gb|EHW24931.1| his Kinase A domain protein [Escherichia coli DEC8D]
gi|378065533|gb|EHW27678.1| his Kinase A domain protein [Escherichia coli DEC8E]
gi|378074922|gb|EHW36951.1| his Kinase A domain protein [Escherichia coli DEC9A]
gi|378077565|gb|EHW39559.1| his Kinase A domain protein [Escherichia coli DEC9B]
gi|378084392|gb|EHW46304.1| his Kinase A domain protein [Escherichia coli DEC9C]
gi|378091020|gb|EHW52855.1| his Kinase A domain protein [Escherichia coli DEC9D]
gi|378095351|gb|EHW57139.1| his Kinase A domain protein [Escherichia coli DEC9E]
gi|378106854|gb|EHW68482.1| his Kinase A domain protein [Escherichia coli DEC10B]
gi|378116791|gb|EHW78311.1| his Kinase A domain protein [Escherichia coli DEC10D]
gi|378129968|gb|EHW91338.1| his Kinase A domain protein [Escherichia coli DEC11A]
gi|378132078|gb|EHW93431.1| his Kinase A domain protein [Escherichia coli DEC10F]
gi|378142581|gb|EHX03783.1| his Kinase A domain protein [Escherichia coli DEC11B]
gi|378149073|gb|EHX10206.1| sensor kinase protein RcsC [Escherichia coli DEC11D]
gi|378150569|gb|EHX11684.1| sensor kinase protein RcsC [Escherichia coli DEC11C]
gi|378157720|gb|EHX18751.1| sensor kinase protein RcsC [Escherichia coli DEC11E]
gi|378164754|gb|EHX25695.1| his Kinase A domain protein [Escherichia coli DEC12B]
gi|378169086|gb|EHX29986.1| sensor kinase protein RcsC [Escherichia coli DEC12A]
gi|378182285|gb|EHX42938.1| his Kinase A domain protein [Escherichia coli DEC12D]
gi|378186997|gb|EHX47618.1| his Kinase A domain protein [Escherichia coli DEC13A]
gi|378187584|gb|EHX48195.1| his Kinase A domain protein [Escherichia coli DEC12E]
gi|378201045|gb|EHX61498.1| his Kinase A domain protein [Escherichia coli DEC13C]
gi|378203246|gb|EHX63670.1| his Kinase A domain protein [Escherichia coli DEC13D]
gi|378212937|gb|EHX73256.1| his Kinase A domain protein [Escherichia coli DEC13E]
gi|378217321|gb|EHX77600.1| sensor kinase protein RcsC [Escherichia coli DEC14A]
gi|378237515|gb|EHX97538.1| his Kinase A domain protein [Escherichia coli DEC15A]
gi|378243476|gb|EHY03422.1| his Kinase A domain protein [Escherichia coli DEC15B]
gi|378247231|gb|EHY07150.1| his Kinase A domain protein [Escherichia coli DEC15C]
gi|378254193|gb|EHY14057.1| his Kinase A domain protein [Escherichia coli DEC15D]
gi|378258834|gb|EHY18650.1| his Kinase A domain protein [Escherichia coli DEC15E]
gi|383392322|gb|AFH17280.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli KO11FL]
gi|383405785|gb|AFH12028.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli W]
gi|386147733|gb|EIG94173.1| sensor kinase protein RcsC [Escherichia coli 97.0246]
gi|386163328|gb|EIH25123.1| sensor kinase protein RcsC [Escherichia coli 1.2264]
gi|386167712|gb|EIH34228.1| sensor kinase protein RcsC [Escherichia coli 96.0497]
gi|386172719|gb|EIH44733.1| sensor kinase protein RcsC [Escherichia coli 99.0741]
gi|386176487|gb|EIH53966.1| sensor kinase protein RcsC [Escherichia coli 3.2608]
gi|386184623|gb|EIH67362.1| sensor kinase protein RcsC [Escherichia coli 93.0624]
gi|386191142|gb|EIH79888.1| sensor kinase protein RcsC [Escherichia coli 4.0522]
gi|386194403|gb|EIH88659.1| sensor kinase protein RcsC [Escherichia coli JB1-95]
gi|386200908|gb|EIH99898.1| sensor kinase protein RcsC [Escherichia coli 96.154]
gi|386204550|gb|EII09061.1| sensor kinase protein RcsC [Escherichia coli 5.0959]
gi|386214015|gb|EII24440.1| sensor kinase protein RcsC [Escherichia coli 9.0111]
gi|386216164|gb|EII32656.1| sensor kinase protein RcsC [Escherichia coli 4.0967]
gi|386228397|gb|EII55753.1| sensor kinase protein RcsC [Escherichia coli 3.3884]
gi|388339392|gb|EIL05777.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O103:H2 str. CVM9450]
gi|388341797|gb|EIL07882.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9534]
gi|388344708|gb|EIL10532.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O103:H25 str. CVM9340]
gi|388358999|gb|EIL23368.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9545]
gi|388360145|gb|EIL24392.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CVM9574]
gi|388373837|gb|EIL37065.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
O26:H11 str. CVM10026]
gi|388379093|gb|EIL41784.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM9942]
gi|388396793|gb|EIL57863.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 541-15]
gi|388399177|gb|EIL59979.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 541-1]
gi|388416628|gb|EIL76509.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli CUMT8]
gi|391281975|gb|EIQ40612.1| sensor kinase protein RcsC [Shigella sonnei 3226-85]
gi|391284582|gb|EIQ43177.1| sensor kinase protein RcsC [Shigella sonnei 3233-85]
gi|391293997|gb|EIQ52256.1| his Kinase A domain protein [Shigella sonnei 4822-66]
gi|391304994|gb|EIQ62789.1| sensor kinase protein RcsC [Escherichia coli EPECa12]
gi|394387105|gb|EJE64575.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CVM9602]
gi|394391862|gb|EJE68691.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CVM9634]
gi|394401471|gb|EJE77284.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O26:H11 str. CVM10021]
gi|394405229|gb|EJE80464.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9553]
gi|394412397|gb|EJE86532.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CVM9455]
gi|397784787|gb|EJK95640.1| sensor kinase protein rcsC [Escherichia coli STEC_O31]
gi|397899441|gb|EJL15815.1| his Kinase A domain protein [Shigella sonnei str. Moseley]
gi|406776936|gb|AFS56360.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407053524|gb|AFS73575.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 2011C-3493]
gi|407066145|gb|AFS87192.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408228572|gb|EKI52106.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
N1]
gi|421938227|gb|EKT95814.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H8 str. CFSAN001632]
gi|421949200|gb|EKU06189.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O111:H11 str. CFSAN001630]
gi|429346214|gb|EKY82995.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02033-1]
gi|429348966|gb|EKY85722.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02092]
gi|429361188|gb|EKY97845.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02030]
gi|429362619|gb|EKY99266.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02093]
gi|429362890|gb|EKY99535.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02281]
gi|429366008|gb|EKZ02620.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02318]
gi|429376863|gb|EKZ13391.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-02913]
gi|429379337|gb|EKZ15838.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-03439]
gi|429380905|gb|EKZ17394.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-03943]
gi|429393126|gb|EKZ29525.1| sensor kinase RcsC [Escherichia coli O104:H4 str. 11-04080]
gi|429405227|gb|EKZ41493.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4984]
gi|429406993|gb|EKZ43247.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410741|gb|EKZ46962.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414453|gb|EKZ50628.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421062|gb|EKZ57184.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4986]
gi|429429396|gb|EKZ65465.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-5604]
gi|429432083|gb|EKZ68123.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-4988]
gi|429436289|gb|EKZ72305.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-5603]
gi|429438494|gb|EKZ74487.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-6006]
gi|429448116|gb|EKZ84033.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec12-0465]
gi|429451834|gb|EKZ87722.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec11-9941]
gi|429457778|gb|EKZ93616.1| sensor kinase RcsC [Escherichia coli O104:H4 str. Ec12-0466]
gi|430898689|gb|ELC20822.1| sensor kinase RcsC [Escherichia coli KTE12]
gi|430979771|gb|ELC96536.1| sensor kinase RcsC [Escherichia coli KTE193]
gi|431006962|gb|ELD21931.1| sensor kinase RcsC [Escherichia coli KTE210]
gi|431213870|gb|ELF11725.1| sensor kinase RcsC [Escherichia coli KTE142]
gi|431354521|gb|ELG41247.1| sensor kinase RcsC [Escherichia coli KTE91]
gi|431362640|gb|ELG49218.1| sensor kinase RcsC [Escherichia coli KTE101]
gi|431376218|gb|ELG61541.1| sensor kinase RcsC [Escherichia coli KTE135]
gi|431385567|gb|ELG69554.1| sensor kinase RcsC [Escherichia coli KTE136]
gi|431404851|gb|ELG88097.1| sensor kinase RcsC [Escherichia coli KTE146]
gi|431453181|gb|ELH33591.1| sensor kinase RcsC [Escherichia coli KTE184]
gi|431471444|gb|ELH51337.1| sensor kinase RcsC [Escherichia coli KTE203]
gi|431551066|gb|ELI25053.1| sensor kinase RcsC [Escherichia coli KTE112]
gi|431609939|gb|ELI79244.1| sensor kinase RcsC [Escherichia coli KTE138]
gi|431645587|gb|ELJ13131.1| sensor kinase RcsC [Escherichia coli KTE163]
gi|431656130|gb|ELJ23151.1| sensor kinase RcsC [Escherichia coli KTE166]
gi|431715750|gb|ELJ79895.1| sensor kinase RcsC [Escherichia coli KTE90]
gi|443422806|gb|AGC87710.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli APEC O78]
gi|449317628|gb|EMD07713.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O08]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Shigella boydii Sb227]
gi|416296637|ref|ZP_11651497.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
gi|417683009|ref|ZP_12332362.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli E24377A]
gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
E24377A]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli HS]
gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli ATCC 8739]
gi|432370458|ref|ZP_19613544.1| sensor kinase RcsC [Escherichia coli KTE10]
gi|432486025|ref|ZP_19727940.1| sensor kinase RcsC [Escherichia coli KTE212]
gi|432526995|ref|ZP_19764088.1| sensor kinase RcsC [Escherichia coli KTE233]
gi|433174140|ref|ZP_20358665.1| sensor kinase RcsC [Escherichia coli KTE232]
gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
HS]
gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
ATCC 8739]
gi|430884670|gb|ELC07605.1| sensor kinase RcsC [Escherichia coli KTE10]
gi|431015234|gb|ELD28789.1| sensor kinase RcsC [Escherichia coli KTE212]
gi|431063254|gb|ELD72503.1| sensor kinase RcsC [Escherichia coli KTE233]
gi|431691884|gb|ELJ57329.1| sensor kinase RcsC [Escherichia coli KTE232]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|22023765|gb|AAM89215.1|AF462151_1 hybrid histidine kinase [Tritrichomonas foetus]
Length = 1547
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + + L+++G + +AENGKEA+D +FD++F+D +MPV++GIEA
Sbjct: 1429 LVVEDNKTNQFVMKKILQNIGCPMRIAENGKEAIDALEQ-EEFDLIFMDCQMPVLDGIEA 1487
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
T+ IRS I I+ +T+ E + E +AG+D +KP+ + +I
Sbjct: 1488 TKIIRSCDKNYSSIPIIALTASAVEGDEETCRKAGMDAYLSKPVRIQQI 1536
>gi|442598020|ref|ZP_21015794.1| Two-component sensor protein RcsC [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|441653294|emb|CCQ01497.1| Two-component sensor protein RcsC [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432765615|ref|ZP_20000053.1| sensor kinase RcsC [Escherichia coli KTE48]
gi|431309790|gb|ELF97983.1| sensor kinase RcsC [Escherichia coli KTE48]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|251785581|ref|YP_002999885.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli B str. REL606]
gi|254288991|ref|YP_003054739.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli BL21(DE3)]
gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli B str. REL606]
gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli BL21(DE3)]
gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|425423037|ref|ZP_18804205.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
0.1288]
gi|408343592|gb|EKJ57986.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
0.1288]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|424154073|ref|ZP_17885049.1| response regulator [Escherichia coli PA24]
gi|390724662|gb|EIN97211.1| response regulator [Escherichia coli PA24]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417133962|ref|ZP_11978747.1| sensor kinase protein RcsC [Escherichia coli 5.0588]
gi|386151816|gb|EIH03105.1| sensor kinase protein RcsC [Escherichia coli 5.0588]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|417613689|ref|ZP_12264147.1| sensor kinase protein rcsC [Escherichia coli STEC_EH250]
gi|345361883|gb|EGW94040.1| sensor kinase protein rcsC [Escherichia coli STEC_EH250]
Length = 929
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 800 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 858
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 859 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 912
>gi|336315193|ref|ZP_08570105.1| CheY-like receiver domain-containing protein [Rheinheimera sp.
A13L]
gi|335880604|gb|EGM78491.1| CheY-like receiver domain-containing protein [Rheinheimera sp.
A13L]
Length = 384
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 19 PSAKNLRL---FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIV 74
P+ LRL L+V+D+ F R + + LK+ G V+VA G+E +D SG +D+V
Sbjct: 32 PTQSQLRLQGIHLLLVEDNEFNRLVATELLKNEGATVDVAIGGQEGIDAVLSGVTHYDLV 91
Query: 75 FIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+D +MP ++G+EAT+ IR+ ++ I+ +T+ +E+EA + AG++ +KPL ++
Sbjct: 92 LMDVQMPGIDGLEATKRIRAKPGFAQLPIIAMTANVYLSEQEACLHAGMNAHLSKPLDLE 151
Query: 133 KIL 135
KI+
Sbjct: 152 KII 154
>gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory
system with RcsB and YojN [Shigella sp. D9]
gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory
system with RcsB and YojN [Shigella sp. D9]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. EDL933]
gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. Sakai]
gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4113]
gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4401]
gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4486]
gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4196]
gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4076]
gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC869]
gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC508]
gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. EC4024]
gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4206]
gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4045]
gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4042]
gi|209396281|ref|YP_002271632.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. EC4115]
gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. TW14359]
gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. FRIK2000]
gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. FRIK966]
gi|291283469|ref|YP_003500287.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O55:H7 str. CB9615]
gi|387507607|ref|YP_006159863.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O55:H7 str. RM12579]
gi|387883438|ref|YP_006313740.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli Xuzhou21]
gi|416310894|ref|ZP_11656629.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
1044]
gi|416318208|ref|ZP_11660918.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
EC1212]
gi|416330563|ref|ZP_11669513.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
1125]
gi|416775502|ref|ZP_11874342.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. G5101]
gi|416809168|ref|ZP_11888855.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O55:H7 str. 3256-97]
gi|416819690|ref|ZP_11893412.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O55:H7 str. USDA 5905]
gi|416830560|ref|ZP_11898700.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. LSU-61]
gi|419046219|ref|ZP_13593156.1| his Kinase A domain protein [Escherichia coli DEC3A]
gi|419057968|ref|ZP_13604773.1| his Kinase A domain protein [Escherichia coli DEC3C]
gi|419063436|ref|ZP_13610164.1| his Kinase A domain protein [Escherichia coli DEC3D]
gi|419070332|ref|ZP_13615955.1| his Kinase A domain protein [Escherichia coli DEC3E]
gi|419081425|ref|ZP_13626873.1| his Kinase A domain protein [Escherichia coli DEC4A]
gi|419087199|ref|ZP_13632556.1| his Kinase A domain protein [Escherichia coli DEC4B]
gi|419093421|ref|ZP_13638706.1| his Kinase A domain protein [Escherichia coli DEC4C]
gi|419098960|ref|ZP_13644159.1| his Kinase A domain protein [Escherichia coli DEC4D]
gi|419104786|ref|ZP_13649915.1| his Kinase A domain protein [Escherichia coli DEC4E]
gi|419110244|ref|ZP_13655302.1| his Kinase A domain protein [Escherichia coli DEC4F]
gi|419121185|ref|ZP_13666142.1| his Kinase A domain protein [Escherichia coli DEC5B]
gi|419126814|ref|ZP_13671699.1| his Kinase A domain protein [Escherichia coli DEC5C]
gi|419137271|ref|ZP_13682067.1| sensor kinase protein RcsC [Escherichia coli DEC5E]
gi|420287591|ref|ZP_14789782.1| response regulator [Escherichia coli TW10246]
gi|420293177|ref|ZP_14795300.1| response regulator [Escherichia coli TW11039]
gi|420304944|ref|ZP_14806940.1| response regulator [Escherichia coli TW10119]
gi|420310426|ref|ZP_14812359.1| response regulator [Escherichia coli EC1738]
gi|420316053|ref|ZP_14817929.1| response regulator [Escherichia coli EC1734]
gi|421813143|ref|ZP_16248867.1| response regulator [Escherichia coli 8.0416]
gi|421819029|ref|ZP_16254527.1| sensor kinase protein RcsC [Escherichia coli 10.0821]
gi|421824854|ref|ZP_16260221.1| response regulator [Escherichia coli FRIK920]
gi|424084710|ref|ZP_17821220.1| response regulator [Escherichia coli FDA517]
gi|424091193|ref|ZP_17827138.1| response regulator [Escherichia coli FRIK1996]
gi|424103968|ref|ZP_17838767.1| response regulator [Escherichia coli FRIK1990]
gi|424128913|ref|ZP_17861837.1| response regulator [Escherichia coli PA9]
gi|424247898|ref|ZP_17890533.1| response regulator [Escherichia coli PA25]
gi|424324433|ref|ZP_17896454.1| response regulator [Escherichia coli PA28]
gi|424463040|ref|ZP_17913519.1| response regulator [Escherichia coli PA39]
gi|424475945|ref|ZP_17925288.1| response regulator [Escherichia coli PA42]
gi|424481696|ref|ZP_17930695.1| response regulator [Escherichia coli TW07945]
gi|424487844|ref|ZP_17936432.1| response regulator [Escherichia coli TW09098]
gi|424494435|ref|ZP_17942208.1| response regulator [Escherichia coli TW09195]
gi|424501215|ref|ZP_17948139.1| response regulator [Escherichia coli EC4203]
gi|424507447|ref|ZP_17953877.1| response regulator [Escherichia coli EC4196]
gi|424514771|ref|ZP_17959487.1| response regulator [Escherichia coli TW14313]
gi|424521093|ref|ZP_17965236.1| response regulator [Escherichia coli TW14301]
gi|424526929|ref|ZP_17970663.1| response regulator [Escherichia coli EC4421]
gi|424545174|ref|ZP_17987623.1| response regulator [Escherichia coli EC4402]
gi|424551429|ref|ZP_17993313.1| response regulator [Escherichia coli EC4439]
gi|424563961|ref|ZP_18004981.1| response regulator [Escherichia coli EC4437]
gi|425104941|ref|ZP_18507270.1| sensor kinase protein RcsC [Escherichia coli 5.2239]
gi|425110861|ref|ZP_18512796.1| response regulator [Escherichia coli 6.0172]
gi|425132558|ref|ZP_18533422.1| sensor kinase protein RcsC [Escherichia coli 8.2524]
gi|425139027|ref|ZP_18539433.1| response regulator [Escherichia coli 10.0833]
gi|425163254|ref|ZP_18562149.1| response regulator [Escherichia coli FDA506]
gi|425168920|ref|ZP_18567419.1| response regulator [Escherichia coli FDA507]
gi|425181084|ref|ZP_18578790.1| response regulator [Escherichia coli FRIK1999]
gi|425194119|ref|ZP_18590902.1| response regulator [Escherichia coli NE1487]
gi|425200553|ref|ZP_18596783.1| response regulator [Escherichia coli NE037]
gi|425231675|ref|ZP_18625724.1| response regulator [Escherichia coli PA45]
gi|425237592|ref|ZP_18631322.1| response regulator [Escherichia coli TT12B]
gi|425243811|ref|ZP_18637131.1| response regulator [Escherichia coli MA6]
gi|425249933|ref|ZP_18642884.1| response regulator [Escherichia coli 5905]
gi|425255793|ref|ZP_18648328.1| response regulator [Escherichia coli CB7326]
gi|425262011|ref|ZP_18654041.1| response regulator [Escherichia coli EC96038]
gi|425295481|ref|ZP_18685701.1| response regulator [Escherichia coli PA38]
gi|425312150|ref|ZP_18701352.1| response regulator [Escherichia coli EC1735]
gi|425318097|ref|ZP_18706907.1| response regulator [Escherichia coli EC1736]
gi|425324198|ref|ZP_18712588.1| response regulator [Escherichia coli EC1737]
gi|425336646|ref|ZP_18724053.1| response regulator [Escherichia coli EC1847]
gi|425348854|ref|ZP_18735353.1| response regulator [Escherichia coli EC1849]
gi|425355151|ref|ZP_18741241.1| response regulator [Escherichia coli EC1850]
gi|425361111|ref|ZP_18746784.1| response regulator [Escherichia coli EC1856]
gi|425367281|ref|ZP_18752479.1| response regulator [Escherichia coli EC1862]
gi|425373656|ref|ZP_18758322.1| response regulator [Escherichia coli EC1864]
gi|425386503|ref|ZP_18770083.1| response regulator [Escherichia coli EC1866]
gi|425393226|ref|ZP_18776356.1| response regulator [Escherichia coli EC1868]
gi|425399323|ref|ZP_18782053.1| response regulator [Escherichia coli EC1869]
gi|425405402|ref|ZP_18787658.1| response regulator [Escherichia coli EC1870]
gi|425411807|ref|ZP_18793598.1| response regulator [Escherichia coli NE098]
gi|425418138|ref|ZP_18799432.1| response regulator [Escherichia coli FRIK523]
gi|425429467|ref|ZP_18810093.1| response regulator [Escherichia coli 0.1304]
gi|428953938|ref|ZP_19025753.1| sensor kinase protein RcsC [Escherichia coli 88.1042]
gi|428966444|ref|ZP_19037222.1| sensor kinase protein RcsC [Escherichia coli 90.0091]
gi|428972382|ref|ZP_19042744.1| sensor kinase protein RcsC [Escherichia coli 90.0039]
gi|428978801|ref|ZP_19048644.1| sensor kinase protein RcsC [Escherichia coli 90.2281]
gi|428984477|ref|ZP_19053889.1| sensor kinase protein RcsC [Escherichia coli 93.0055]
gi|429002737|ref|ZP_19070898.1| sensor kinase protein RcsC [Escherichia coli 95.0183]
gi|429015322|ref|ZP_19082243.1| sensor kinase protein RcsC [Escherichia coli 95.0943]
gi|429021287|ref|ZP_19087826.1| sensor kinase protein RcsC [Escherichia coli 96.0428]
gi|429039592|ref|ZP_19104725.1| sensor kinase protein RcsC [Escherichia coli 96.0932]
gi|429045413|ref|ZP_19110144.1| sensor kinase protein RcsC [Escherichia coli 96.0107]
gi|429056225|ref|ZP_19120575.1| sensor kinase protein RcsC [Escherichia coli 97.1742]
gi|444925763|ref|ZP_21245079.1| sensor kinase protein RcsC [Escherichia coli 09BKT078844]
gi|444931468|ref|ZP_21250525.1| sensor kinase protein RcsC [Escherichia coli 99.0814]
gi|444936877|ref|ZP_21255672.1| sensor kinase protein RcsC [Escherichia coli 99.0815]
gi|444942504|ref|ZP_21261040.1| sensor kinase protein RcsC [Escherichia coli 99.0816]
gi|444959064|ref|ZP_21276933.1| sensor kinase protein RcsC [Escherichia coli 99.1753]
gi|444966767|ref|ZP_21284282.1| sensor kinase protein RcsC [Escherichia coli 99.1775]
gi|444975455|ref|ZP_21292601.1| sensor kinase protein RcsC [Escherichia coli 99.1805]
gi|444980928|ref|ZP_21297847.1| sensor kinase protein RcsC [Escherichia coli ATCC 700728]
gi|444996886|ref|ZP_21313397.1| sensor kinase protein RcsC [Escherichia coli PA13]
gi|445002441|ref|ZP_21318841.1| sensor kinase protein RcsC [Escherichia coli PA2]
gi|445007941|ref|ZP_21324194.1| sensor kinase protein RcsC [Escherichia coli PA47]
gi|445012974|ref|ZP_21329092.1| sensor kinase protein RcsC [Escherichia coli PA48]
gi|445024358|ref|ZP_21340193.1| sensor kinase protein RcsC [Escherichia coli 7.1982]
gi|445029632|ref|ZP_21345320.1| sensor kinase protein RcsC [Escherichia coli 99.1781]
gi|445035094|ref|ZP_21350636.1| sensor kinase protein RcsC [Escherichia coli 99.1762]
gi|445045917|ref|ZP_21361181.1| sensor kinase protein RcsC [Escherichia coli 3.4880]
gi|445051489|ref|ZP_21366553.1| sensor kinase protein RcsC [Escherichia coli 95.0083]
gi|445057250|ref|ZP_21372120.1| sensor kinase protein RcsC [Escherichia coli 99.0670]
gi|452971971|ref|ZP_21970198.1| sensory histidine kinase [Escherichia coli O157:H7 str. EC4009]
gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4196]
gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4113]
gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4076]
gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4401]
gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4486]
gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC869]
gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC508]
gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4206]
gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4045]
gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4042]
gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
O157:H7 str. EC4115]
gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. TW14359]
gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
O55:H7 str. CB9615]
gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
EC1212]
gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. G5101]
gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O55:H7 str. USDA 5905]
gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H7 str. LSU-61]
gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
1125]
gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
1044]
gi|374359601|gb|AEZ41308.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O55:H7 str. RM12579]
gi|377893049|gb|EHU57488.1| his Kinase A domain protein [Escherichia coli DEC3A]
gi|377904555|gb|EHU68833.1| his Kinase A domain protein [Escherichia coli DEC3C]
gi|377909911|gb|EHU74109.1| his Kinase A domain protein [Escherichia coli DEC3D]
gi|377912162|gb|EHU76325.1| his Kinase A domain protein [Escherichia coli DEC3E]
gi|377926055|gb|EHU89990.1| his Kinase A domain protein [Escherichia coli DEC4A]
gi|377930389|gb|EHU94272.1| his Kinase A domain protein [Escherichia coli DEC4B]
gi|377941863|gb|EHV05600.1| his Kinase A domain protein [Escherichia coli DEC4C]
gi|377942070|gb|EHV05806.1| his Kinase A domain protein [Escherichia coli DEC4D]
gi|377947269|gb|EHV10936.1| his Kinase A domain protein [Escherichia coli DEC4E]
gi|377957126|gb|EHV20662.1| his Kinase A domain protein [Escherichia coli DEC4F]
gi|377966906|gb|EHV30315.1| his Kinase A domain protein [Escherichia coli DEC5B]
gi|377974926|gb|EHV38251.1| his Kinase A domain protein [Escherichia coli DEC5C]
gi|377984264|gb|EHV47499.1| sensor kinase protein RcsC [Escherichia coli DEC5E]
gi|386796896|gb|AFJ29930.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli Xuzhou21]
gi|390641630|gb|EIN21054.1| response regulator [Escherichia coli FRIK1996]
gi|390643191|gb|EIN22554.1| response regulator [Escherichia coli FDA517]
gi|390664190|gb|EIN41652.1| response regulator [Escherichia coli FRIK1990]
gi|390683893|gb|EIN59545.1| response regulator [Escherichia coli PA9]
gi|390723049|gb|EIN95669.1| response regulator [Escherichia coli PA25]
gi|390727946|gb|EIO00329.1| response regulator [Escherichia coli PA28]
gi|390769048|gb|EIO38004.1| response regulator [Escherichia coli PA39]
gi|390769519|gb|EIO38446.1| response regulator [Escherichia coli PA42]
gi|390790348|gb|EIO57776.1| response regulator [Escherichia coli TW10246]
gi|390791397|gb|EIO58788.1| response regulator [Escherichia coli TW07945]
gi|390797263|gb|EIO64519.1| response regulator [Escherichia coli TW11039]
gi|390806622|gb|EIO73525.1| response regulator [Escherichia coli TW09098]
gi|390815966|gb|EIO82478.1| response regulator [Escherichia coli TW10119]
gi|390826234|gb|EIO92090.1| response regulator [Escherichia coli EC4203]
gi|390830776|gb|EIO96271.1| response regulator [Escherichia coli TW09195]
gi|390831694|gb|EIO97062.1| response regulator [Escherichia coli EC4196]
gi|390846285|gb|EIP09889.1| response regulator [Escherichia coli TW14301]
gi|390847300|gb|EIP10848.1| response regulator [Escherichia coli TW14313]
gi|390850877|gb|EIP14218.1| response regulator [Escherichia coli EC4421]
gi|390871098|gb|EIP32540.1| response regulator [Escherichia coli EC4402]
gi|390878911|gb|EIP39721.1| response regulator [Escherichia coli EC4439]
gi|390893938|gb|EIP53472.1| response regulator [Escherichia coli EC4437]
gi|390899705|gb|EIP58941.1| response regulator [Escherichia coli EC1738]
gi|390908043|gb|EIP66884.1| response regulator [Escherichia coli EC1734]
gi|408067906|gb|EKH02334.1| response regulator [Escherichia coli FRIK920]
gi|408078842|gb|EKH12970.1| response regulator [Escherichia coli FDA506]
gi|408083152|gb|EKH17070.1| response regulator [Escherichia coli FDA507]
gi|408097524|gb|EKH30415.1| response regulator [Escherichia coli FRIK1999]
gi|408108460|gb|EKH40463.1| response regulator [Escherichia coli NE1487]
gi|408115276|gb|EKH46742.1| response regulator [Escherichia coli NE037]
gi|408146076|gb|EKH75219.1| response regulator [Escherichia coli PA45]
gi|408155433|gb|EKH83756.1| response regulator [Escherichia coli TT12B]
gi|408160090|gb|EKH88134.1| response regulator [Escherichia coli MA6]
gi|408164100|gb|EKH91940.1| response regulator [Escherichia coli 5905]
gi|408173566|gb|EKI00586.1| response regulator [Escherichia coli CB7326]
gi|408180678|gb|EKI07283.1| response regulator [Escherichia coli EC96038]
gi|408218039|gb|EKI42273.1| response regulator [Escherichia coli PA38]
gi|408227653|gb|EKI51235.1| response regulator [Escherichia coli EC1735]
gi|408238695|gb|EKI61481.1| response regulator [Escherichia coli EC1736]
gi|408243167|gb|EKI65711.1| response regulator [Escherichia coli EC1737]
gi|408256627|gb|EKI78002.1| response regulator [Escherichia coli EC1847]
gi|408265721|gb|EKI86403.1| response regulator [Escherichia coli EC1849]
gi|408274989|gb|EKI94971.1| response regulator [Escherichia coli EC1850]
gi|408277307|gb|EKI97117.1| response regulator [Escherichia coli EC1856]
gi|408287141|gb|EKJ06037.1| response regulator [Escherichia coli EC1862]
gi|408291309|gb|EKJ09943.1| response regulator [Escherichia coli EC1864]
gi|408308303|gb|EKJ25573.1| response regulator [Escherichia coli EC1868]
gi|408308510|gb|EKJ25779.1| response regulator [Escherichia coli EC1866]
gi|408319518|gb|EKJ35654.1| response regulator [Escherichia coli EC1869]
gi|408326111|gb|EKJ41940.1| response regulator [Escherichia coli EC1870]
gi|408326975|gb|EKJ42744.1| response regulator [Escherichia coli NE098]
gi|408336923|gb|EKJ51671.1| response regulator [Escherichia coli FRIK523]
gi|408346720|gb|EKJ61006.1| response regulator [Escherichia coli 0.1304]
gi|408550097|gb|EKK27442.1| sensor kinase protein RcsC [Escherichia coli 5.2239]
gi|408551111|gb|EKK28398.1| response regulator [Escherichia coli 6.0172]
gi|408579925|gb|EKK55373.1| response regulator [Escherichia coli 10.0833]
gi|408581563|gb|EKK56898.1| sensor kinase protein RcsC [Escherichia coli 8.2524]
gi|408601449|gb|EKK75252.1| response regulator [Escherichia coli 8.0416]
gi|408612786|gb|EKK86120.1| sensor kinase protein RcsC [Escherichia coli 10.0821]
gi|427205087|gb|EKV75347.1| sensor kinase protein RcsC [Escherichia coli 88.1042]
gi|427222261|gb|EKV91053.1| sensor kinase protein RcsC [Escherichia coli 90.0091]
gi|427224584|gb|EKV93289.1| sensor kinase protein RcsC [Escherichia coli 90.2281]
gi|427228124|gb|EKV96608.1| sensor kinase protein RcsC [Escherichia coli 90.0039]
gi|427242779|gb|EKW10176.1| sensor kinase protein RcsC [Escherichia coli 93.0055]
gi|427261735|gb|EKW27652.1| sensor kinase protein RcsC [Escherichia coli 95.0183]
gi|427262298|gb|EKW28199.1| sensor kinase protein RcsC [Escherichia coli 95.0943]
gi|427276849|gb|EKW41414.1| sensor kinase protein RcsC [Escherichia coli 96.0428]
gi|427292217|gb|EKW55573.1| sensor kinase protein RcsC [Escherichia coli 96.0932]
gi|427299505|gb|EKW62476.1| sensor kinase protein RcsC [Escherichia coli 96.0107]
gi|427313488|gb|EKW75596.1| sensor kinase protein RcsC [Escherichia coli 97.1742]
gi|444538705|gb|ELV18552.1| sensor kinase protein RcsC [Escherichia coli 99.0814]
gi|444540195|gb|ELV19894.1| sensor kinase protein RcsC [Escherichia coli 09BKT078844]
gi|444547855|gb|ELV26412.1| sensor kinase protein RcsC [Escherichia coli 99.0815]
gi|444558917|gb|ELV36178.1| sensor kinase protein RcsC [Escherichia coli 99.0816]
gi|444569543|gb|ELV46125.1| sensor kinase protein RcsC [Escherichia coli 99.1775]
gi|444573583|gb|ELV49948.1| sensor kinase protein RcsC [Escherichia coli 99.1753]
gi|444593723|gb|ELV68930.1| sensor kinase protein RcsC [Escherichia coli ATCC 700728]
gi|444596232|gb|ELV71315.1| sensor kinase protein RcsC [Escherichia coli 99.1805]
gi|444607442|gb|ELV82020.1| sensor kinase protein RcsC [Escherichia coli PA13]
gi|444616300|gb|ELV90468.1| sensor kinase protein RcsC [Escherichia coli PA2]
gi|444624205|gb|ELV98110.1| sensor kinase protein RcsC [Escherichia coli PA47]
gi|444624616|gb|ELV98498.1| sensor kinase protein RcsC [Escherichia coli PA48]
gi|444639062|gb|ELW12383.1| sensor kinase protein RcsC [Escherichia coli 7.1982]
gi|444641967|gb|ELW15183.1| sensor kinase protein RcsC [Escherichia coli 99.1781]
gi|444645598|gb|ELW18660.1| sensor kinase protein RcsC [Escherichia coli 99.1762]
gi|444660214|gb|ELW32587.1| sensor kinase protein RcsC [Escherichia coli 3.4880]
gi|444665090|gb|ELW37240.1| sensor kinase protein RcsC [Escherichia coli 95.0083]
gi|444669999|gb|ELW41933.1| sensor kinase protein RcsC [Escherichia coli 99.0670]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli IAI1]
gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 55989]
gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with
RcsB and YojN [Escherichia coli O103:H2 str. 12009]
gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|415813355|ref|ZP_11505164.1| sensor kinase protein rcsC [Escherichia coli LT-68]
gi|415822909|ref|ZP_11511428.1| sensor kinase protein rcsC [Escherichia coli OK1180]
gi|419350300|ref|ZP_13891638.1| his Kinase A domain protein [Escherichia coli DEC13B]
gi|420391952|ref|ZP_14891205.1| his Kinase A domain protein [Escherichia coli EPEC C342-62]
gi|422350985|ref|ZP_16431831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|427805357|ref|ZP_18972424.1| sensor for ctr capsule biosynthesis [Escherichia coli chi7122]
gi|427809915|ref|ZP_18976980.1| sensor for ctr capsule biosynthesis, probable histidine kinase
acting on RcsB [Escherichia coli]
gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046]
gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 55989]
gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli IAI1]
gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with
RcsB and YojN [Escherichia coli O103:H2 str. 12009]
gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68]
gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli OK1180]
gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|378200478|gb|EHX60933.1| his Kinase A domain protein [Escherichia coli DEC13B]
gi|391312633|gb|EIQ70241.1| his Kinase A domain protein [Escherichia coli EPEC C342-62]
gi|412963539|emb|CCK47464.1| sensor for ctr capsule biosynthesis [Escherichia coli chi7122]
gi|412970094|emb|CCJ44737.1| sensor for ctr capsule biosynthesis, probable histidine kinase
acting on RcsB [Escherichia coli]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|418940424|ref|ZP_13493789.1| multi-sensor hybrid histidine kinase [Rhizobium sp. PDO1-076]
gi|375052838|gb|EHS49240.1| multi-sensor hybrid histidine kinase [Rhizobium sp. PDO1-076]
Length = 753
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL L+V+D+ + + + L LG VE+A +G EAV L R KFD+V +D +MPVM+
Sbjct: 492 RLKILLVEDNRVNQIVATRFLARLGQDVEIANDGTEAVVLARQ-QKFDLVLMDMQMPVMD 550
Query: 85 GIEATREI---RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
GIEATR I R + I+ +T+ S+ +R + AG+ +KP++++++ ++ D
Sbjct: 551 GIEATRRIIAERGPSAETPIIAMTANASDDDRRRCLDAGMSGFESKPVTLERLRKMIAD 609
>gi|342874915|gb|EGU76822.1| hypothetical protein FOXB_12719 [Fusarium oxysporum Fo5176]
Length = 1228
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 21/148 (14%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
++K K E PS ++ L+VDD+ + +M +K GF E AENG+EAV+ F+
Sbjct: 1084 TRKQKKPEMPSKAHV----LLVDDNKINLNLLTMFMKKCGFSYEEAENGEEAVETFKKST 1139
Query: 70 ------------KFDIVFIDKEMPVMNGIEATREIRSMGIKIK-----IVGVTSLNSEAE 112
FD + +D MPVMNG+EAT+ IR + + K + +T L S
Sbjct: 1140 IGDAEPGTLVKKHFDYILMDISMPVMNGVEATKRIRKLEAEYKVPRTTVFALTGLASADA 1199
Query: 113 REAFMQAGLDLCHTKPLSVDKILPLMED 140
R M AG+DL KP+ ++ ++E+
Sbjct: 1200 RLDAMSAGVDLFLPKPVKFAELKTMIEN 1227
>gi|432637466|ref|ZP_19873336.1| sensor kinase RcsC [Escherichia coli KTE81]
gi|432705012|ref|ZP_19940113.1| sensor kinase RcsC [Escherichia coli KTE171]
gi|431170660|gb|ELE70849.1| sensor kinase RcsC [Escherichia coli KTE81]
gi|431242682|gb|ELF37094.1| sensor kinase RcsC [Escherichia coli KTE171]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|386705478|ref|YP_006169325.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
P12b]
gi|425289229|ref|ZP_18680077.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
3006]
gi|383103646|gb|AFG41155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
P12b]
gi|408213781|gb|EKI38260.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
3006]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|365971408|ref|YP_004952969.1| sensor kinase protein RcsC [Enterobacter cloacae EcWSU1]
gi|365750321|gb|AEW74548.1| Sensor kinase protein RcsC [Enterobacter cloacae EcWSU1]
Length = 948
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D MP
Sbjct: 822 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNMPN 880
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 881 MDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|417639973|ref|ZP_12290114.1| sensor kinase protein rcsC [Escherichia coli TX1999]
gi|345392975|gb|EGX22753.1| sensor kinase protein rcsC [Escherichia coli TX1999]
Length = 929
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 800 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 858
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 859 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 912
>gi|417688607|ref|ZP_12337848.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|416787157|ref|ZP_11879253.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H- str. 493-89]
gi|416798752|ref|ZP_11884170.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H- str. H 2687]
gi|419076462|ref|ZP_13621980.1| his Kinase A domain protein [Escherichia coli DEC3F]
gi|420281290|ref|ZP_14783528.1| response regulator [Escherichia coli TW06591]
gi|425268047|ref|ZP_18659691.1| response regulator [Escherichia coli 5412]
gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H- str. 493-89]
gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O157:H- str. H 2687]
gi|377921503|gb|EHU85502.1| his Kinase A domain protein [Escherichia coli DEC3F]
gi|390781577|gb|EIO49254.1| response regulator [Escherichia coli TW06591]
gi|408183108|gb|EKI09582.1| response regulator [Escherichia coli 5412]
Length = 949
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli UMN026]
gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli UMN026]
gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 928
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+N + LVVDD R + + L SLG++ A +G +A+ + S +IV D M
Sbjct: 797 AENGDIMILVVDDHPINRRLLADQLSSLGYQAMTANDGVDALGVL-SKNHINIVLTDVNM 855
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G TR +R G++ ++GVT+ ERE + AG+D C +KP+++D +
Sbjct: 856 PNMDGYLFTRRMREQGLRFPVIGVTANALAEERERCLGAGMDHCLSKPVTLDTL 909
>gi|429097053|ref|ZP_19159159.1| Two-component sensor protein RcsC [Cronobacter dublinensis 582]
gi|426283393|emb|CCJ85272.1| Two-component sensor protein RcsC [Cronobacter dublinensis 582]
Length = 124
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD R + + L +LG++ A +G +A+++ S DIV D MP M+G
Sbjct: 3 LVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVNMPNMDGYRL 61
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 62 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 105
>gi|322693500|gb|EFY85358.1| putative histidine kinase TCS1p [Metarhizium acridum CQMa 102]
Length = 814
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEA 61
LG G+S++ ++ E S + LVV+D+ + + L SLG K + VA +G +A
Sbjct: 540 LGNGDSAAVLDRLKEAGSTMRI----LVVEDNIINQKVLVGMLHSLGLKNIAVASDGAQA 595
Query: 62 VDLFR-SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
V + S +FD+V +D MPVM+G EAT IR +G + IV +T+ RE +Q+G
Sbjct: 596 VSIVNGSPGEFDMVLMDVSMPVMDGFEATASIRRLGSNVPIVAMTANALRGYREKCIQSG 655
Query: 121 LDLCHTKPLS 130
+D KP+S
Sbjct: 656 MDDYIPKPVS 665
>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 965
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P + + L D+ I TI S L+S G+++ +AENG++A+D R D++ +D
Sbjct: 827 PKTLTIPVILLAEDNQANIDTISSY-LESRGYEMVLAENGQQALDFAREKCP-DLIIMDI 884
Query: 79 EMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
+MP MNG+EA R+IR+ I I I+ +T+L ++R + AG + TKP+ + +++
Sbjct: 885 QMPGMNGLEAIRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVL 944
Query: 137 LMEDLMKNN 145
++ L+KN+
Sbjct: 945 TIQQLLKNH 953
>gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|420351561|ref|ZP_14852745.1| sensor kinase protein RcsC [Shigella boydii 4444-74]
gi|391287288|gb|EIQ45818.1| sensor kinase protein RcsC [Shigella boydii 4444-74]
Length = 787
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 658 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 716
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 717 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 770
>gi|417718095|ref|ZP_12366996.1| sensor kinase protein rcsC [Shigella flexneri K-227]
gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227]
Length = 880
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 751 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 809
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 810 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 863
>gi|451979850|ref|ZP_21928259.1| putative Histidine kinase [Nitrospina gracilis 3/211]
gi|451762942|emb|CCQ89467.1| putative Histidine kinase [Nitrospina gracilis 3/211]
Length = 907
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R+ ALVVDD+ + L +G ++ A +GKE +++ G K DI+F+D +MP +N
Sbjct: 695 RVKALVVDDNEANVDVLCEMLMDIGVEIRKAYSGKEGIEI-AGGWKPDIIFMDFKMPQLN 753
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
G+EA + I+ I+IV VT+ N ER+ F++ G+D KP +++L ++D+++
Sbjct: 754 GLEAAKAIQHENQGIRIVIVTASNYRHERDRFLKEGVDGFIGKPFLREELLKALQDVLR 812
>gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
16994]
gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
16994]
Length = 1421
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIE 87
L+V+D+ + + + LK G +V+ A+NGKEAVD+F S + F I+ +D +MP+M+G E
Sbjct: 1101 LLVEDNELNQEVALLMLKKAGIEVKTAQNGKEAVDIFLSNPEYFHIILMDLQMPIMSGYE 1160
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
A+ IR KI I+ +T+ +RE ++AG++ +KP+ D
Sbjct: 1161 ASAIIRENDKKIPIIALTAAAMVEDREKVIEAGMNDHLSKPIDTD 1205
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL-FRSGAK---FDIVFIDKEMPVMN 84
L+VDD R I ++ G + E A G+EA+++ ++ A +D+V +D MP M+
Sbjct: 955 LIVDDQEISRIILREMAENFGCQTEEASGGEEAIEMILKADADKRGYDVVIMDWYMPGMD 1014
Query: 85 GIEATREI----RSMGIKIKIVGVTSLNSEAEREAFMQA-GLDLCHTKPLS 130
G EA R++ R +K K+ + +++ ++ E ++ +D KP++
Sbjct: 1015 GKEAIRQLNQLEREGVLKTKVPSILMVSAHSKEEIHVEEMEIDAFLAKPVT 1065
>gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP6]
gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP6]
Length = 925
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
+E P A+ + L+ +D+ R + LK LG++ +VAENG + + + +DIV
Sbjct: 793 LEGPIAEARTIRILMAEDNPVNRKVALSMLKRLGYQADVAENGLKVLQALQE-KPYDIVL 851
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+D +MP M+G+EATR IR G I+ +T+ + R+ + AG++ +KP+ ++++
Sbjct: 852 MDVQMPEMDGLEATRRIRDSGYNTCIIAMTAHSMGESRDECLDAGMNAYISKPIEIEELA 911
Query: 136 PLMEDLMK 143
++E ++
Sbjct: 912 RVLESCIQ 919
>gi|238505703|ref|XP_002384063.1| sensor histidine kinase/response regulator, putative [Aspergillus
flavus NRRL3357]
gi|220690177|gb|EED46527.1| sensor histidine kinase/response regulator, putative [Aspergillus
flavus NRRL3357]
Length = 1238
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 16 MENPSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLF-RSGAKFD 72
++ P +K RL LVVDD+ + +K ++ AENGK AVD R +D
Sbjct: 1092 IKEPESKPQRLARVLVVDDNAINLNLMLTFMKKRNLSTLDSAENGKVAVDAVERLQQGYD 1151
Query: 73 IVFIDKEMPVMNGIEATREIRSMG------IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
++F+D MPVMNG EATR IR++ I+ +T L+S + + +G+DL T
Sbjct: 1152 LIFMDISMPVMNGFEATRAIRAIEKERDCCTPATIIALTGLSSSRDESEALTSGVDLFLT 1211
Query: 127 KPLSVDKILPLMEDLMKN 144
KP+S ++ L+E+ +N
Sbjct: 1212 KPVSFKEVSRLLEEWAEN 1229
>gi|83773310|dbj|BAE63437.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1194
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 16 MENPSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLF-RSGAKFD 72
++ P +K RL LVVDD+ + +K ++ AENGK AVD R +D
Sbjct: 1048 IKEPESKPQRLARVLVVDDNAINLNLMLTFMKKRNLSTLDSAENGKVAVDAVERLQQGYD 1107
Query: 73 IVFIDKEMPVMNGIEATREIRSMG------IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
++F+D MPVMNG EATR IR++ I+ +T L+S + + +G+DL T
Sbjct: 1108 LIFMDISMPVMNGFEATRAIRAIEKERDCCTPATIIALTGLSSSRDESEALTSGVDLFLT 1167
Query: 127 KPLSVDKILPLMEDLMKN 144
KP+S ++ L+E+ +N
Sbjct: 1168 KPVSFKEVSRLLEEWAEN 1185
>gi|313681751|ref|YP_004059489.1| histidine kinase [Sulfuricurvum kujiense DSM 16994]
gi|313154611|gb|ADR33289.1| histidine kinase [Sulfuricurvum kujiense DSM 16994]
Length = 648
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALVV+D+ + + + LK G V NG EAV++ R FDIVF+D +MP+ +GI
Sbjct: 526 ALVVEDNLINQRLIQLLLKEYGISVVTVSNGDEAVEICRE-KTFDIVFMDIDMPIKDGIL 584
Query: 88 ATREIRSMGIKIK-----IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
AT EI++ K I+ +T+L E +RE ++ GLD +KPL+ +K+
Sbjct: 585 ATEEIKAQERPFKIGHMPIIALTALAMEGDREYILERGLDDYLSKPLTREKL 636
>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 693
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFID 77
PS + L + L+ +D + + + L+ G KV + NG+EA++ R G KFD+VF+D
Sbjct: 566 PSNRCLNI--LLAEDSITNQMVARLMLEKRGHKVHIVNNGEEALEAIRHGHKKFDLVFMD 623
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
MP+++G+EATR +RS GI+I I+ +T+ + ++ + +AG++ KP+ ++ +
Sbjct: 624 VSMPLVDGVEATRIVRSEGIEIPIIALTANVMKQDQIEYHEAGMNEFLPKPIRGSELTSI 683
Query: 138 ME 139
++
Sbjct: 684 LQ 685
>gi|430376208|ref|ZP_19430611.1| PAS/PAC sensor hybrid histidine kinase [Moraxella macacae 0408225]
gi|429541439|gb|ELA09467.1| PAS/PAC sensor hybrid histidine kinase [Moraxella macacae 0408225]
Length = 948
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVMNGIE 87
LV +D+ + I L++LG++V +A G+EAV L ++ K +V +D +MP+M+G+
Sbjct: 833 LVAEDNLINQKIAKKHLETLGYEVIIANEGEEAVALLSQNREKIALVLMDCQMPIMDGLT 892
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
ATR+IR+ I I+ +T+ +S+ R+ AG+D TKP++ K+ L+ M
Sbjct: 893 ATRQIRANQDSIPIIALTANDSDESRKLCSDAGMDGFLTKPINKQKLTKLLSRYM 947
>gi|395226150|ref|ZP_10404647.1| PAS domain S-box [Thiovulum sp. ES]
gi|394445654|gb|EJF06541.1| PAS domain S-box [Thiovulum sp. ES]
Length = 1429
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 8 SSSKKAKIMENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
S S+K++ ++ S +L + L+ +D+ + + S K++GF ++A NG+EAV
Sbjct: 1086 SFSEKSEDFKDYSKNDLSVIGDKRVLIAEDNETNQIVASNIFKNMGFHFKIANNGEEAVK 1145
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
L + FDI+F+D +MP ++G+EA+REIR++GI I I+ +++ +++ E + AG++
Sbjct: 1146 LSKE-EHFDIIFMDIQMPKLDGLEASREIRNLGITIPIIALSAAVMKSDVELSLSAGMNG 1204
Query: 124 CHTKPL 129
KP+
Sbjct: 1205 HLVKPI 1210
>gi|424141768|ref|ZP_17873681.1| response regulator [Escherichia coli PA14]
gi|390701869|gb|EIN76087.1| response regulator [Escherichia coli PA14]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|415879987|ref|ZP_11544988.1| sensor kinase protein RcsC [Escherichia coli MS 79-10]
gi|342926589|gb|EGU95311.1| sensor kinase protein RcsC [Escherichia coli MS 79-10]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|417301278|ref|ZP_12088439.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
Length = 993
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 20 SAKNLRLFA---LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFD 72
S++ LRL A LVVDD R + + LK G V AENG+EA+D+ SG ++
Sbjct: 573 SSELLRLPAKRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYE 632
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+V +D +MPV++G ATR +R ++ +T +RE M AG D TKP+++D
Sbjct: 633 LVLMDMQMPVLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLD 692
Query: 133 KILPLMEDLM 142
++L ++ +
Sbjct: 693 ELLEMVSQYL 702
>gi|416259893|ref|ZP_11640134.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
74-1112]
gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
74-1112]
Length = 787
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 658 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 716
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 717 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 770
>gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with
RcsB and YojN [Escherichia coli O111:H- str. 11128]
gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with
RcsB and YojN [Escherichia coli O111:H- str. 11128]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|419132238|ref|ZP_13677075.1| his Kinase A domain protein [Escherichia coli DEC5D]
gi|420270633|ref|ZP_14772991.1| response regulator [Escherichia coli PA22]
gi|420276238|ref|ZP_14778522.1| response regulator [Escherichia coli PA40]
gi|420299051|ref|ZP_14801100.1| response regulator [Escherichia coli TW09109]
gi|424078254|ref|ZP_17815258.1| response regulator [Escherichia coli FDA505]
gi|424116560|ref|ZP_17850424.1| response regulator [Escherichia coli PA3]
gi|424135166|ref|ZP_17867652.1| response regulator [Escherichia coli PA10]
gi|424469405|ref|ZP_17919251.1| response regulator [Escherichia coli PA41]
gi|424533090|ref|ZP_17976455.1| response regulator [Escherichia coli EC4422]
gi|424557614|ref|ZP_17999051.1| response regulator [Escherichia coli EC4436]
gi|424570087|ref|ZP_18010672.1| response regulator [Escherichia coli EC4448]
gi|424576250|ref|ZP_18016353.1| response regulator [Escherichia coli EC1845]
gi|424582093|ref|ZP_18021762.1| response regulator [Escherichia coli EC1863]
gi|425098813|ref|ZP_18501565.1| sensor kinase protein RcsC [Escherichia coli 3.4870]
gi|425144890|ref|ZP_18544899.1| sensor kinase protein RcsC [Escherichia coli 10.0869]
gi|425156815|ref|ZP_18556096.1| response regulator [Escherichia coli PA34]
gi|425175053|ref|ZP_18573183.1| response regulator [Escherichia coli FDA504]
gi|425187350|ref|ZP_18584633.1| response regulator [Escherichia coli FRIK1997]
gi|425206977|ref|ZP_18602789.1| response regulator [Escherichia coli FRIK2001]
gi|425330482|ref|ZP_18718371.1| response regulator [Escherichia coli EC1846]
gi|425343054|ref|ZP_18729971.1| response regulator [Escherichia coli EC1848]
gi|428959875|ref|ZP_19031209.1| sensor kinase protein RcsC [Escherichia coli 89.0511]
gi|429027286|ref|ZP_19093319.1| sensor kinase protein RcsC [Escherichia coli 96.0427]
gi|429050892|ref|ZP_19115470.1| sensor kinase protein RcsC [Escherichia coli 97.0003]
gi|429068073|ref|ZP_19131557.1| sensor kinase protein RcsC [Escherichia coli 99.0672]
gi|429827176|ref|ZP_19358254.1| sensor kinase protein RcsC [Escherichia coli 96.0109]
gi|444953574|ref|ZP_21271685.1| sensor kinase protein RcsC [Escherichia coli 99.0848]
gi|444970198|ref|ZP_21287574.1| sensor kinase protein RcsC [Escherichia coli 99.1793]
gi|444991592|ref|ZP_21308248.1| sensor kinase protein RcsC [Escherichia coli PA19]
gi|445040720|ref|ZP_21356109.1| sensor kinase protein RcsC [Escherichia coli PA35]
gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase
acting on RcsB [Escherichia coli O157:H7 str. EDL933]
gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str.
Sakai]
gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli]
gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli]
gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli]
gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli]
gi|377975201|gb|EHV38522.1| his Kinase A domain protein [Escherichia coli DEC5D]
gi|390644220|gb|EIN23513.1| response regulator [Escherichia coli FDA505]
gi|390677992|gb|EIN53992.1| response regulator [Escherichia coli PA3]
gi|390697114|gb|EIN71548.1| response regulator [Escherichia coli PA10]
gi|390714145|gb|EIN87059.1| response regulator [Escherichia coli PA22]
gi|390757648|gb|EIO27118.1| response regulator [Escherichia coli PA40]
gi|390767851|gb|EIO36917.1| response regulator [Escherichia coli PA41]
gi|390806746|gb|EIO73648.1| response regulator [Escherichia coli TW09109]
gi|390861696|gb|EIP23940.1| response regulator [Escherichia coli EC4422]
gi|390883988|gb|EIP44377.1| response regulator [Escherichia coli EC4436]
gi|390896250|gb|EIP55641.1| response regulator [Escherichia coli EC4448]
gi|390919598|gb|EIP77947.1| response regulator [Escherichia coli EC1863]
gi|390920567|gb|EIP78835.1| response regulator [Escherichia coli EC1845]
gi|408071199|gb|EKH05552.1| response regulator [Escherichia coli PA34]
gi|408091411|gb|EKH24642.1| response regulator [Escherichia coli FDA504]
gi|408104232|gb|EKH36554.1| response regulator [Escherichia coli FRIK1997]
gi|408121294|gb|EKH52255.1| response regulator [Escherichia coli FRIK2001]
gi|408247544|gb|EKI69744.1| response regulator [Escherichia coli EC1846]
gi|408259329|gb|EKI80516.1| response regulator [Escherichia coli EC1848]
gi|408550854|gb|EKK28170.1| sensor kinase protein RcsC [Escherichia coli 3.4870]
gi|408591611|gb|EKK66032.1| sensor kinase protein RcsC [Escherichia coli 10.0869]
gi|427207464|gb|EKV77633.1| sensor kinase protein RcsC [Escherichia coli 89.0511]
gi|427279689|gb|EKW44100.1| sensor kinase protein RcsC [Escherichia coli 96.0427]
gi|427300818|gb|EKW63743.1| sensor kinase protein RcsC [Escherichia coli 97.0003]
gi|427319763|gb|EKW81566.1| sensor kinase protein RcsC [Escherichia coli 99.0672]
gi|429254250|gb|EKY38690.1| sensor kinase protein RcsC [Escherichia coli 96.0109]
gi|444563888|gb|ELV40864.1| sensor kinase protein RcsC [Escherichia coli 99.0848]
gi|444579751|gb|ELV55728.1| sensor kinase protein RcsC [Escherichia coli 99.1793]
gi|444607746|gb|ELV82314.1| sensor kinase protein RcsC [Escherichia coli PA19]
gi|444654795|gb|ELW27442.1| sensor kinase protein RcsC [Escherichia coli PA35]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|410086892|ref|ZP_11283599.1| Two-component sensor protein RcsC [Morganella morganii SC01]
gi|409766726|gb|EKN50816.1| Two-component sensor protein RcsC [Morganella morganii SC01]
Length = 948
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD R + S L GF A++G +A+D F + DI+ D MP MNG +
Sbjct: 827 LIVDDHPINRHLLSDQLHLFGFHTATADDGLDALD-FLETHEVDIILSDVNMPNMNGYDL 885
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR +R G+ + ++G+T+ ERE + +G++ C +KP+S+ + +M+
Sbjct: 886 TRTLREKGMTLPVIGITANAMAEERERCLASGMNDCLSKPVSMQALRTMMQ 936
>gi|424539153|ref|ZP_17982122.1| response regulator [Escherichia coli EC4013]
gi|390865896|gb|EIP27890.1| response regulator [Escherichia coli EC4013]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|419278722|ref|ZP_13820969.1| his Kinase A domain protein [Escherichia coli DEC10E]
gi|378128147|gb|EHW89532.1| his Kinase A domain protein [Escherichia coli DEC10E]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|419051935|ref|ZP_13598807.1| his Kinase A domain protein [Escherichia coli DEC3B]
gi|419115554|ref|ZP_13660572.1| his Kinase A domain protein [Escherichia coli DEC5A]
gi|424097768|ref|ZP_17833105.1| response regulator [Escherichia coli FRIK1985]
gi|424110671|ref|ZP_17844929.1| response regulator [Escherichia coli 93-001]
gi|425150933|ref|ZP_18550567.1| sensor kinase protein RcsC [Escherichia coli 88.0221]
gi|428947837|ref|ZP_19020143.1| sensor kinase protein RcsC [Escherichia coli 88.1467]
gi|428990697|ref|ZP_19059704.1| sensor kinase protein RcsC [Escherichia coli 93.0056]
gi|428996497|ref|ZP_19065126.1| sensor kinase protein RcsC [Escherichia coli 94.0618]
gi|429008877|ref|ZP_19076421.1| sensor kinase protein RcsC [Escherichia coli 95.1288]
gi|429033493|ref|ZP_19099035.1| sensor kinase protein RcsC [Escherichia coli 96.0939]
gi|429061768|ref|ZP_19125807.1| sensor kinase protein RcsC [Escherichia coli 97.0007]
gi|429073977|ref|ZP_19137241.1| response regulator [Escherichia coli 99.0678]
gi|444948034|ref|ZP_21266356.1| sensor kinase protein RcsC [Escherichia coli 99.0839]
gi|445018851|ref|ZP_21334827.1| sensor kinase protein RcsC [Escherichia coli PA8]
gi|377893620|gb|EHU58054.1| his Kinase A domain protein [Escherichia coli DEC3B]
gi|377960504|gb|EHV23985.1| his Kinase A domain protein [Escherichia coli DEC5A]
gi|390660886|gb|EIN38576.1| response regulator [Escherichia coli 93-001]
gi|390662344|gb|EIN39948.1| response regulator [Escherichia coli FRIK1985]
gi|408596656|gb|EKK70781.1| sensor kinase protein RcsC [Escherichia coli 88.0221]
gi|427208696|gb|EKV78785.1| sensor kinase protein RcsC [Escherichia coli 88.1467]
gi|427242325|gb|EKW09740.1| sensor kinase protein RcsC [Escherichia coli 93.0056]
gi|427246478|gb|EKW13692.1| sensor kinase protein RcsC [Escherichia coli 94.0618]
gi|427265055|gb|EKW30682.1| sensor kinase protein RcsC [Escherichia coli 95.1288]
gi|427283455|gb|EKW47663.1| sensor kinase protein RcsC [Escherichia coli 96.0939]
gi|427316054|gb|EKW78028.1| sensor kinase protein RcsC [Escherichia coli 97.0007]
gi|427328583|gb|EKW89945.1| response regulator [Escherichia coli 99.0678]
gi|444557614|gb|ELV34940.1| sensor kinase protein RcsC [Escherichia coli 99.0839]
gi|444630247|gb|ELW03912.1| sensor kinase protein RcsC [Escherichia coli PA8]
Length = 926
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 797 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 855
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 856 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 909
>gi|383789521|ref|YP_005474095.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
gi|383106055|gb|AFG36388.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
Length = 642
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +DD + + + L++ G VE ENG++A+ + +G +D+V +D +MP M+G++A
Sbjct: 517 LVAEDDRINQRVITAILRAQGCVVETVENGRQALSVLETG-DYDLVLMDLQMPEMDGLQA 575
Query: 89 TREIRSMGIKIK-----IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
T+ IR ++ IV VT+ SE +R A M AG+D KP+S K+L + +
Sbjct: 576 TQIIRDPASPVRDHSIPIVAVTAFASELDRTACMDAGMDGFLGKPISAAKLLQTIRE 632
>gi|317151308|ref|XP_001824570.2| two-component sensor protein histidine protein kinase (dhkk, dhkj)
[Aspergillus oryzae RIB40]
Length = 1236
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 16 MENPSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLF-RSGAKFD 72
++ P +K RL LVVDD+ + +K ++ AENGK AVD R +D
Sbjct: 1090 IKEPESKPQRLARVLVVDDNAINLNLMLTFMKKRNLSTLDSAENGKVAVDAVERLQQGYD 1149
Query: 73 IVFIDKEMPVMNGIEATREIRSMG------IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
++F+D MPVMNG EATR IR++ I+ +T L+S + + +G+DL T
Sbjct: 1150 LIFMDISMPVMNGFEATRAIRAIEKERDCCTPATIIALTGLSSSRDESEALTSGVDLFLT 1209
Query: 127 KPLSVDKILPLMEDLMKN 144
KP+S ++ L+E+ +N
Sbjct: 1210 KPVSFKEVSRLLEEWAEN 1227
>gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|415778277|ref|ZP_11489323.1| sensor kinase protein rcsC [Escherichia coli 3431]
gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|415863948|ref|ZP_11537099.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli]
Length = 933
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 867
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVV+DD + S L+ +G NG++A+++ + G+ FD VF+D +MPVM+G
Sbjct: 746 LAILVVEDDRVNQLAISRMLEKMGHFPTCTPNGEKALEMLK-GSIFDCVFMDIQMPVMDG 804
Query: 86 IEATREIRS----MGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+EATR IR+ G+ I I+ +T+ A+REAF++AG++ KP+S +++ ++
Sbjct: 805 MEATRMIRTAPSLAGVASIPIIALTAHAMPADREAFLKAGMNDYVAKPVSFEQLAEVLSR 864
Query: 141 LM 142
++
Sbjct: 865 II 866
>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya dadantii Ech703]
gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
Length = 934
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
GE+ + E ++R+ LVVDD R + + L SLG++V A +G +A+D+
Sbjct: 788 GEAPVLPSASYERSENGDIRI--LVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVL 845
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S DIV D MP M+G T+ +R M ++GVT+ ER+ +QAG+D C
Sbjct: 846 -SKNPVDIVLTDVNMPNMDGYRFTQRLRDMAQTFPVIGVTANALAEERQRCLQAGMDNCL 904
Query: 126 TKPLSVDKI 134
+KP++++ +
Sbjct: 905 SKPVTLETL 913
>gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium
spinosum DSM 4136]
Length = 836
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 17 ENPSAKNLRLFA-------LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSG 68
E+P+A + FA L+V+D + + M L LG+ V++AENG+EAVD+
Sbjct: 693 ESPAAPERQTFAQDHPARILLVEDQPMNQKLAKMMLNKLGYLNVDIAENGREAVDMVVD- 751
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIK----IVGVTSLNSEAEREAFMQAGLDLC 124
A +D+VF+D +MP++ G +ATREIR+ +K IV +T +E+ M+AG++
Sbjct: 752 ATYDLVFMDLQMPILGGEDATREIRA-NFHVKHQPVIVAMTGHTLSGVKESCMEAGMNGF 810
Query: 125 HTKPLSVDKI 134
KP+S++ +
Sbjct: 811 LCKPVSLEDL 820
>gi|449052092|ref|ZP_21732172.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae hvKP1]
gi|448876045|gb|EMB11045.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae hvKP1]
Length = 946
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ + + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSPALMAPEAQAGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|424831585|ref|ZP_18256313.1| sensor kinase protein RcsC [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|414709020|emb|CCN30724.1| sensor kinase protein RcsC [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
Length = 946
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ + + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSPALMAPEAQAGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|365137343|ref|ZP_09344062.1| sensor protein rcsC [Klebsiella sp. 4_1_44FAA]
gi|363656207|gb|EHL94977.1| sensor protein rcsC [Klebsiella sp. 4_1_44FAA]
Length = 946
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ + + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSPALMAPEAQAGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|386035794|ref|YP_005955707.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae KCTC 2242]
gi|339762922|gb|AEJ99142.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae KCTC 2242]
Length = 946
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ + + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSPALMAPEAQAGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya dadantii 3937]
gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya dadantii 3937]
Length = 951
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
++N + LVVDD R + + L SLG++V A +G +A+D+ DI+ D M
Sbjct: 820 SENSDIRLLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLAKNP-VDIILTDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI---LPL 137
P M+G T+ +R M + ++GVT+ ER+ +QAG+D C +KP+++D + L
Sbjct: 879 PNMDGYRFTQRLREMEQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTLQQSLSY 938
Query: 138 MEDLMKNN 145
+L++ N
Sbjct: 939 YSNLVRQN 946
>gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|402779731|ref|YP_006635277.1| two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|425082482|ref|ZP_18485579.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|428933832|ref|ZP_19007373.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae JHCK1]
gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system
with RcsB [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|402540667|gb|AFQ64816.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405600734|gb|EKB73899.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|426304273|gb|EKV66421.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae JHCK1]
Length = 946
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ + + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSPALMAPEAQAGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
gi|378979864|ref|YP_005228005.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|419764016|ref|ZP_14290256.1| sensor kinase protein RcsC [Klebsiella pneumoniae subsp. pneumoniae
DSM 30104]
gi|419972755|ref|ZP_14488182.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419977566|ref|ZP_14492865.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419983318|ref|ZP_14498469.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419989433|ref|ZP_14504409.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419995472|ref|ZP_14510278.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420001616|ref|ZP_14516271.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420006480|ref|ZP_14520977.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420012300|ref|ZP_14526614.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420018083|ref|ZP_14532281.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420023829|ref|ZP_14537844.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420031870|ref|ZP_14545689.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420037044|ref|ZP_14550701.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420040992|ref|ZP_14554490.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420046753|ref|ZP_14560072.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420052463|ref|ZP_14565644.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420060345|ref|ZP_14573345.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420063923|ref|ZP_14576734.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420069857|ref|ZP_14582511.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420075401|ref|ZP_14587877.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420081162|ref|ZP_14593472.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421909547|ref|ZP_16339357.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421916882|ref|ZP_16346446.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424932508|ref|ZP_18350880.1| Hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425075676|ref|ZP_18478779.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425086312|ref|ZP_18489405.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425092554|ref|ZP_18495639.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428150292|ref|ZP_18998074.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428941009|ref|ZP_19014072.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae VA360]
gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system
with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
gi|364519275|gb|AEW62403.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397350152|gb|EJJ43242.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397353907|gb|EJJ46974.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397355489|gb|EJJ48488.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397367239|gb|EJJ59851.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397369556|gb|EJJ62156.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397371940|gb|EJJ64448.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397382189|gb|EJJ74352.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397386143|gb|EJJ78229.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397390798|gb|EJJ82696.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397399373|gb|EJJ91027.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397400065|gb|EJJ91711.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397406060|gb|EJJ97498.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397418526|gb|EJK09684.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397419310|gb|EJK10459.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397425365|gb|EJK16244.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397433637|gb|EJK24281.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397434482|gb|EJK25117.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397442451|gb|EJK32802.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397448494|gb|EJK38668.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397453467|gb|EJK43527.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|397742599|gb|EJK89817.1| sensor kinase protein RcsC [Klebsiella pneumoniae subsp. pneumoniae
DSM 30104]
gi|405594076|gb|EKB67499.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405605227|gb|EKB78293.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405611780|gb|EKB84546.1| sensor protein rcsC [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407806695|gb|EKF77946.1| Hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410116449|emb|CCM81982.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120599|emb|CCM89071.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426301208|gb|EKV63457.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella pneumoniae VA360]
gi|427539736|emb|CCM94212.1| Two-component sensor protein RcsC [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 946
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 8 SSSKKAKIMENPSAK---NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+S++ + + P A+ N + LVVDD R + + L SLG++ A +G +A+++
Sbjct: 802 ASAENSPALMAPEAQAGNNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNV 861
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 862 L-SKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 921 LSKPVTLD 928
>gi|391863117|gb|EIT72431.1| signal transduction histidine kinase [Aspergillus oryzae 3.042]
Length = 1184
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 16 MENPSAKNLRLF-ALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLF-RSGAKFD 72
++ P +K RL LVVDD+ + +K ++ AENGK AVD R +D
Sbjct: 1038 IKEPESKPQRLARVLVVDDNAINLNLMLTFMKKRNLSTLDSAENGKVAVDAVERLQQGYD 1097
Query: 73 IVFIDKEMPVMNGIEATREIRSMG------IKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
++F+D MPVMNG EATR IR++ I+ +T L+S + + +G+DL T
Sbjct: 1098 LIFMDISMPVMNGFEATRAIRAIEKERDCCTPATIIALTGLSSSRDESEALTSGVDLFLT 1157
Query: 127 KPLSVDKILPLMEDLMKN 144
KP+S ++ L+E+ +N
Sbjct: 1158 KPVSFKEVSRLLEEWAEN 1175
>gi|367039283|ref|XP_003650022.1| hypothetical protein THITE_2109219 [Thielavia terrestris NRRL 8126]
gi|346997283|gb|AEO63686.1| hypothetical protein THITE_2109219 [Thielavia terrestris NRRL 8126]
Length = 861
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGI 86
LVV+D+ + + L+S+GF+ + +A NG EAV + R A +D+V +D MP+M+G
Sbjct: 560 LVVEDNLINQKVMLGMLRSIGFRNISLASNGIEAVRMVRGRPAAYDVVLMDVNMPIMDGH 619
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
EATR IR+ GI + IV +T+ + +RE ++ G++ KP++ +++ ++
Sbjct: 620 EATRHIRAGGILVPIVAMTAYALKGDRERCIEHGMNDYIAKPVNKQRLIMVL 671
>gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1203
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
+ L+V+D+ + + + LKS G+ V+VAENG+ A+D+ S A +D V +D +MPVM+G+
Sbjct: 1080 YILLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDS-ANYDAVLMDIQMPVMDGL 1138
Query: 87 EATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
AT+E+R ++ ++ +T+ +RE + AG++ TKP+ ++++
Sbjct: 1139 TATKELRKRYSATELPVIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELF 1189
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVMN 84
L LV+DD+ I+S ++ F V+ A +G E L++ S D++ +D MP M+
Sbjct: 936 LKTLVIDDNPTALQIYSSVMRDFHFSVDTAASGPEG--LYKLSKNPVDLLLLDWMMPEMD 993
Query: 85 GIEATREIRSM 95
GI EI M
Sbjct: 994 GIAVIEEIDDM 1004
>gi|393239730|gb|EJD47260.1| hypothetical protein AURDEDRAFT_163867 [Auricularia delicata
TFB-10046 SS5]
Length = 1003
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-----FDIV 74
S + RL LVVDDD R + L LG V+ AE+G++A+D+ + + +
Sbjct: 827 SPNDNRLRVLVVDDDGLTRRLMGRMLARLGCVVDTAEHGQQALDMLLADPPPGTEPYAVT 886
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
F+D +M VM+G++ +R++G + +VGVT +++E +M AG+D TKP+ +
Sbjct: 887 FLDNQMHVMSGLQMIARLRALGRQDFVVGVTGNALLSDQEEYMSAGVDHVLTKPVIEHSL 946
Query: 135 LPLM 138
L ++
Sbjct: 947 LNML 950
>gi|334705873|ref|ZP_08521739.1| hybrid sensory histidine kinase BarA [Aeromonas caviae Ae398]
Length = 906
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L VDD+ + + LK + +V V +NGKEAV+L +S FDI+F+D +MPVM+GI A
Sbjct: 668 LAVDDNAANLKLIAAMLKEMVTEVVVCKNGKEAVNLAQS-QPFDIIFMDIQMPVMDGISA 726
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
T+ IR S+ + IV VT+ ERE ++ G+D KP+ + L+ D
Sbjct: 727 TQAIRHHSLNTETPIVAVTAHAIPGERERLIRQGMDDYLAKPIDEGMLAQLITDF 781
>gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Plautia stali symbiont]
Length = 950
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 10 SKKAKIMENPSAKNLR----LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
S+ A +E P + + + L+VDD R + S L +LG++ + A++G +A+++
Sbjct: 806 SETATTLELPVPQQVSSYEDIMVLIVDDHPINRMLLSEQLGTLGYQTKTAQDGVDALNVL 865
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S DIV D MP M+G T+ +R +G ++GVT+ E++ M AG+D C
Sbjct: 866 -SRNHIDIVLSDVNMPNMDGYRLTQRLRQLGHAFPVIGVTANALAEEKQRCMDAGMDNCL 924
Query: 126 TKPLSVD 132
+KP+++D
Sbjct: 925 SKPVTLD 931
>gi|423205365|ref|ZP_17191921.1| hypothetical protein HMPREF1168_01556 [Aeromonas veronii AMC34]
gi|404624160|gb|EKB21000.1| hypothetical protein HMPREF1168_01556 [Aeromonas veronii AMC34]
Length = 905
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 10 SKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S + K+ P+ + L+ + L VDD+ + + LK + +V V +NGKEAV +S
Sbjct: 648 SSRQKLPAQPAPRQLQPIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVKQAQS- 706
Query: 69 AKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FDI+F+D +MP+M+GI AT+ IR S+ IV VT+ ERE ++ G+D
Sbjct: 707 QPFDIIFMDIQMPIMDGISATQAIRNQSLNTTTPIVAVTAHAIPGERERLIRQGMDDYLA 766
Query: 127 KPLSVDKILPLMEDL 141
KP+ + L+ D
Sbjct: 767 KPIDESMLAQLITDF 781
>gi|423201080|ref|ZP_17187660.1| hypothetical protein HMPREF1167_01243 [Aeromonas veronii AER39]
gi|404618063|gb|EKB14984.1| hypothetical protein HMPREF1167_01243 [Aeromonas veronii AER39]
Length = 905
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 10 SKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S + K+ P+ + L+ + L VDD+ + + LK + +V V +NGKEAV +S
Sbjct: 648 SSRQKLPAQPAPRQLQPIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVKQAQS- 706
Query: 69 AKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FDI+F+D +MP+M+GI AT+ IR S+ IV VT+ ERE ++ G+D
Sbjct: 707 QPFDIIFMDIQMPIMDGISATQAIRNQSLNTTTPIVAVTAHAIPGERERLIRQGMDDYLA 766
Query: 127 KPLSVDKILPLMEDL 141
KP+ + L+ D
Sbjct: 767 KPIDESMLAQLITDF 781
>gi|255948010|ref|XP_002564772.1| Pc22g07510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591789|emb|CAP98039.1| Pc22g07510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 649
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R I S L +LGF + VA NG+EAV+ R FD + +D++MPVM+G A
Sbjct: 521 LLVEDNVINRRIISRKLSTLGFNMSVASNGQEAVEANRDNP-FDCILMDQQMPVMDGNRA 579
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+ IR + G + I+GVT+ +A++E + AG+D KP +++ + L+
Sbjct: 580 AKAIRDIEKETGGHVPILGVTANVRDAQQEEMIDAGMDDIIYKPYGTHELVEKINHLL 637
>gi|330828385|ref|YP_004391337.1| two component system hybrid sensor histidine kinase/response
regulator [Aeromonas veronii B565]
gi|423210927|ref|ZP_17197480.1| hypothetical protein HMPREF1169_02998 [Aeromonas veronii AER397]
gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas veronii B565]
gi|404614322|gb|EKB11323.1| hypothetical protein HMPREF1169_02998 [Aeromonas veronii AER397]
Length = 905
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 10 SKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S + K+ P+ + L+ + L VDD+ + + LK + +V V +NGKEAV +S
Sbjct: 648 SSRQKLPAQPAPRQLQPIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVKQAQS- 706
Query: 69 AKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FDI+F+D +MP+M+GI AT+ IR S+ IV VT+ ERE ++ G+D
Sbjct: 707 QPFDIIFMDIQMPIMDGISATQAIRNQSLNTTTPIVAVTAHAIPGERERLIRQGMDDYLA 766
Query: 127 KPLSVDKILPLMEDL 141
KP+ + L+ D
Sbjct: 767 KPIDESMLAQLITDF 781
>gi|306817907|ref|ZP_07451646.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|304649386|gb|EFM46672.1| response regulator [Mobiluncus mulieris ATCC 35239]
Length = 229
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
ALV+DDD I ++ + +L++ GF E A G+EA + R FD+ +D +P M+G++
Sbjct: 7 ALVLDDDPHIASVITFSLETRGFSWETAGTGREAWAMLRK-KHFDLAVLDVMLPDMSGVD 65
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
TR IR+ I I+ V++L E+ER A ++AG D KP S
Sbjct: 66 LTRRIRA-AFSIPIILVSALGEESERIAGLEAGADDYIVKPFS 107
>gi|436838135|ref|YP_007323351.1| multi-sensor hybrid histidine kinase [Fibrella aestuarina BUZ 2]
gi|384069548|emb|CCH02758.1| multi-sensor hybrid histidine kinase [Fibrella aestuarina BUZ 2]
Length = 1127
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV DD+ R + S L S G +E A+NG +A+D + A FD+V +D +MPVM+G+EA
Sbjct: 889 LVADDNEMNRLVASTMLSSYGAIIEEAQNGVDALDKLKQQA-FDLVLMDIQMPVMDGVEA 947
Query: 89 TREIRS-MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
TR IR+ + ++ ++ +T+ + + F+ AGL KP S +++L ++
Sbjct: 948 TRIIRADISAQLPVIALTAFAVKGDSAKFIGAGLSDYLAKPFSEEQLLAIV 998
>gi|163800895|ref|ZP_02194795.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
gi|159175244|gb|EDP60041.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
Length = 576
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFID 77
PS + + LVV+D + + + L LG V VA +G EA++ + DI+ +D
Sbjct: 449 PSYPSKAVNLLVVEDTVSNQFVIKLLLNKLGHNVFVASHGAEAIEFLEQQKQNIDIILMD 508
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
MP+M+GI ATR IR G I I+ +T+ E+++ MQAG++ +KP+ +I
Sbjct: 509 VSMPIMDGITATRLIRQKGFHIPIIALTAHALESDKTTCMQAGMNAFVSKPVRRQEIYEA 568
Query: 138 MEDLMK 143
++ L++
Sbjct: 569 IQSLIE 574
>gi|421725314|ref|ZP_16164509.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella oxytoca M5al]
gi|410373916|gb|EKP28602.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Klebsiella oxytoca M5al]
Length = 948
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 819 TTSNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDVN 877
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 878 MPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|421615132|ref|ZP_16056165.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SH28]
gi|408494040|gb|EKJ98665.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SH28]
Length = 993
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 20 SAKNLRLFA---LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFD 72
S++ LRL A LVVDD R + + LK G V AENG+EA+D+ SG ++
Sbjct: 573 SSELLRLPAKRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYE 632
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+V +D +MPV++G ATR +R ++ +T +RE M AG D TKP+++D
Sbjct: 633 LVLMDMQMPVLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLD 692
Query: 133 KILPLMEDLM 142
++L ++ +
Sbjct: 693 ELLEMVSQYL 702
>gi|386850135|ref|YP_006268148.1| response regulator mprA [Actinoplanes sp. SE50/110]
gi|359837639|gb|AEV86080.1| Response regulator mprA [Actinoplanes sp. SE50/110]
Length = 238
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+DD +R + L+ G++VE+A +G +A+D R+ A+ D V +D MP M+G+EA
Sbjct: 7 LVVEDDAAVRDSLARTLRFEGYQVEIAGDGLQALDAVRA-AEPDAVILDVSMPRMDGLEA 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R +R+ G+ + ++ +T+ +S +R A + AG D KP ++ ++L + L++ +
Sbjct: 66 CRRMRADGLLLPVLMLTARDSVGDRVAGLDAGADDYLIKPFALQELLARVRALLRRS 122
>gi|449136763|ref|ZP_21772130.1| multi-sensor hybrid histidine kinase [Rhodopirellula europaea 6C]
gi|448884598|gb|EMB15083.1| multi-sensor hybrid histidine kinase [Rhodopirellula europaea 6C]
Length = 993
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 24 LRLFA---LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFI 76
LRL A LVVDD R + + LK G V AENG+EA+D+ SG +++V +
Sbjct: 577 LRLPAKRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNDSGCPYELVLM 636
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
D +MPV++G ATR +R ++ +T +RE M AG D TKP+++D++L
Sbjct: 637 DMQMPVLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLE 696
Query: 137 LMEDLM 142
++ +
Sbjct: 697 MVSQYL 702
>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
Length = 1248
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+V+D+ + + L+ G +VE+A+NG AV+ R+G +D++ +D +MPVM+G
Sbjct: 1110 LKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGV-YDLILMDMQMPVMDG 1168
Query: 86 IEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+ ATREIR +G + + I+ +T+ +A+R+ ++AG++ KP+ D +
Sbjct: 1169 VTATREIRRLGHVDLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMF 1219
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA---KFDIVFIDKEMPVMNG 85
LVVDD+ R + L ++ F+V+ ++G +A+D R +D+VF+D +MP M+G
Sbjct: 966 LVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPDMDG 1025
Query: 86 IEATREIRSMGIKI--KIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+E +I S+ + ++ VT+ E + A + KP+S
Sbjct: 1026 LEVAEQIHSIRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLIKPVS 1072
>gi|407715887|ref|YP_006837167.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Cycloclasticus sp. P1]
gi|407256223|gb|AFT66664.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Cycloclasticus sp. P1]
Length = 1475
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 4 GEGESSS---KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
G+G +S+ KK KI + ++++ ALVVDD+ + + LK +G +VA +G E
Sbjct: 626 GKGSTSAEIGKKPKIKTSDVLQSIK--ALVVDDNVTNQLVAEATLKEIGISSDVANDGLE 683
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREAFM 117
A++ F+ +D++ +D MPVM+G EAT+ IR++ +K + I+ +T+ + + E +
Sbjct: 684 ALNAFKE-KNYDLILMDCNMPVMDGYEATKAIRALDLKYRQPIIIALTAKDQPGDFEHCI 742
Query: 118 QAGLDLCHTKPLSVDKILPLMEDLM 142
+G+D KP + +L +E L
Sbjct: 743 NSGMDDYLLKPFQLSALLAKLEKLF 767
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 14 KIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDI 73
++ + K + L+VDDD R + L+ G++VE+ NG++AV LF + ++
Sbjct: 901 ELSDTEQTKRTKEVVLIVDDDQSTRMTVASVLEREGYQVELGANGRDAVRLFEV-LRPNV 959
Query: 74 VFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
+ +D MP+ +G EA REI++M G + ++ T+L SE + ++G KP+++
Sbjct: 960 IIMDAMMPIKDGFEACREIKAMQGGSDVPVLITTALESEKSVDLAYESGAADFVPKPINL 1019
>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
Length = 1791
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
S + LR+ L+V+D R + L +G +A NG EAV LF S FD+V +D +
Sbjct: 1667 SIRPLRI--LLVEDSAISRRVLLQMLDKMGHTATIAVNGAEAVKLF-SRQSFDMVLMDIQ 1723
Query: 80 MPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MPVM+GI AT++I+SM G K+ ++ +T+ +RE + GLD KP+ ++ +
Sbjct: 1724 MPVMDGIAATKQIKSMQKETGKKVPVIAITANAMAGDRERILSQGLDDYVAKPVKMETL 1782
>gi|423124958|ref|ZP_17112637.1| sensor protein rcsC [Klebsiella oxytoca 10-5250]
gi|376400403|gb|EHT13016.1| sensor protein rcsC [Klebsiella oxytoca 10-5250]
Length = 948
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 819 TTSNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDVN 877
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 878 MPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|422922747|ref|ZP_16955924.1| his Kinase A domain protein [Vibrio cholerae BJG-01]
gi|341644959|gb|EGS69118.1| his Kinase A domain protein [Vibrio cholerae BJG-01]
Length = 570
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
+S+S KI+ + KN + LVV+D + + + L LG+ V +AENG +AV+L
Sbjct: 438 QSTSSSQKIV---NVKNHHI--LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE 492
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FD+V +D MP+M+GI AT+ +R I+I I+ +T+ + ++++ + AG++
Sbjct: 493 RNHAFDLVLMDISMPIMDGIAATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVL 552
Query: 127 KPLSVDKILPLMEDLM 142
KP+ I+ +++ +
Sbjct: 553 KPIRSKDIMEVVKRFL 568
>gi|149912606|ref|ZP_01901140.1| sensor histidine kinase/response regulator hybrid [Roseobacter sp.
AzwK-3b]
gi|149813012|gb|EDM72838.1| sensor histidine kinase/response regulator hybrid [Roseobacter sp.
AzwK-3b]
Length = 130
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD R + + ++ ++V A +G EA+DL + A FD+V +D MP M+G+E
Sbjct: 8 LVVDDDEINRMVVRVLMERRNYRVVEAASGPEALDLVKEEA-FDVVLMDLSMPGMDGLET 66
Query: 89 TREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL---SVDKILPLME 139
TR IRS G ++ +V +T+ S E++ ++AG++ KP VD++L L++
Sbjct: 67 TRHIRSDAAGSQLPVVALTAHTSHKEQQMCLEAGMNAVLRKPFDSEQVDRLLGLLD 122
>gi|149916058|ref|ZP_01904581.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
gi|149810132|gb|EDM69980.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
Length = 130
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD R + + ++ ++V A +G EA+DL + A FD+V +D MP M+G+E
Sbjct: 8 LVVDDDEINRMVVRVLMERRNYRVVEAASGPEALDLVKDEA-FDVVLMDLSMPGMDGLET 66
Query: 89 TREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL---SVDKILPLME 139
TR IRS G ++ +V +T+ S E++ ++AG++ KP VD++L L++
Sbjct: 67 TRHIRSDAAGSQLPVVALTAHTSHKEQQMCLEAGMNAVLRKPFDSEQVDRLLGLLD 122
>gi|429084555|ref|ZP_19147558.1| Two-component sensor protein RcsC [Cronobacter condimenti 1330]
gi|426546445|emb|CCJ73599.1| Two-component sensor protein RcsC [Cronobacter condimenti 1330]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRQLGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|350531306|ref|ZP_08910247.1| Signal transduction histidine kinase [Vibrio rotiferianus DAT722]
Length = 1034
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E ++S + +N + KN R+ L+V+D+ + + S+ L G++ E+AENG+ AVD+
Sbjct: 894 EAAATSIIEESPKNTANKNGRI--LLVEDNNVNQKVASLLLNKAGYQFEIAENGQVAVDM 951
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GI-KIKIVGVTSLNSEAEREAFMQA 119
F+ FDI+ +D MP+ +G EATREIR G+ K I+ +T+ + + + +
Sbjct: 952 FQQDRGFDIILMDCMMPIKDGFEATREIRQFEQDSGLSKTPIIALTASVVDDDIQRCFDS 1011
Query: 120 GLDLCHTKPLSVDKILPLMEDLM 142
G+D KP+ +K++ +E ++
Sbjct: 1012 GMDAYVPKPIRKEKLIHQIESVI 1034
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 21 AKNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
AKNL L+VDD+ + I + ++ GF + A +G+EA++L+++ ++ I+ +D
Sbjct: 762 AKNLSTSGKVLIVDDNNVNQKIAGLHVRKAGFDFDFANDGQEALELYQAN-QYCIILMDC 820
Query: 79 EMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV-- 131
MPVM+G EAT+ IR + KI I+ +T+ + + + G+ KP
Sbjct: 821 MMPVMDGFEATKRIRQIEAEQNKPKIPIIALTASVVDDDIQKCFNVGMTDYMAKPFKANL 880
Query: 132 --DKILPLMED 140
DK+L + D
Sbjct: 881 LQDKMLQAIAD 891
>gi|422780867|ref|ZP_16833652.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
Length = 708
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + + + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 563 ESDDPANTLPTTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 622
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + ++GVT+ E++ +++G+D C
Sbjct: 623 L-SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 681
Query: 125 HTKPLSVDKI 134
+KP+++D I
Sbjct: 682 LSKPVTLDVI 691
>gi|238920215|ref|YP_002933730.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri
93-146]
gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri
93-146]
Length = 224
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R S+ ++ LG +V+ AEN KEA D F DI +D +P +G+
Sbjct: 4 LVVEDNNLLRHHLSVQIRELGHQVDAAENAKEA-DFFVREQGPDIAIVDLGLPGEDGMSM 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS I + I+ +T+ S E+ A ++AG D TKP ++++L M+ LM+ N
Sbjct: 63 IRRWRSEQITLPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRN 119
>gi|344344045|ref|ZP_08774910.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
gi|343804329|gb|EGV22230.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
Length = 950
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVF 75
E S LR+ +VVDD R + L +G +V A NG+EAVD + D+V
Sbjct: 616 ETQSLVGLRV--MVVDDSEINRDLAQTILADVGAEVVQAGNGREAVDWLDAHPDGVDLVL 673
Query: 76 IDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+D +MPV++G EATR+IR+ +I +V V++ E+ER+A + AG+ KP VD+
Sbjct: 674 MDIQMPVLDGYEATRQIRANPALERIPVVAVSAGVLESERQAALDAGMCAFVGKPFDVDE 733
Query: 134 ILPLMEDLMK 143
++ L+ L +
Sbjct: 734 VVALIAQLTR 743
>gi|333898775|ref|YP_004472648.1| multi-sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
gi|333114040|gb|AEF20554.1| multi-sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
Length = 1155
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 85/142 (59%), Gaps = 11/142 (7%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFA----LVVDDDCFIRTIHSM--ALKSLGFKVEVAENG 58
E E SS++ ++++ +++ R+F L+VDDD +R I ++ AL+ G +VEVA NG
Sbjct: 1007 ESELSSERQRMLKTARSRD-RVFEGRRLLLVDDD--VRNIFALTSALEQKGAQVEVARNG 1063
Query: 59 KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKIVGVTSLNSEAEREAF 116
+EA++ + D+V +D MP M+G EATR IR K+ I+ VT+ + +++
Sbjct: 1064 REALEKLEAVGDIDLVLMDVMMPEMDGYEATRRIRENPRWRKLPIIAVTAKAMKDDQDLC 1123
Query: 117 MQAGLDLCHTKPLSVDKILPLM 138
M+AG + KP+ +D++ L+
Sbjct: 1124 MKAGANDYLAKPIDLDRLFSLI 1145
>gi|254282460|ref|ZP_04957428.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium NOR51-B]
gi|219678663|gb|EED35012.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium NOR51-B]
Length = 1316
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + + + L SLGF +AENG+ V LF S FD+V +D +MP+M+G +A
Sbjct: 1051 LVVEDNVVNQMLAAEILASLGFDTTIAENGERGVALF-SEHHFDLVLMDCQMPIMDGFDA 1109
Query: 89 TREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TREIR + I+ +T+ + ERE ++AG+D KP + +I
Sbjct: 1110 TREIRRFEVAEGRHPSVIIALTAGSVANERERALEAGMDDFLMKPCTAPQI 1160
>gi|153834760|ref|ZP_01987427.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
gi|148868795|gb|EDL67863.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
Length = 576
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
+ KI N AK + L LVV+D + + + L LG V +A +G EA+ +
Sbjct: 443 RPVKIEPNHPAKTVNL--LVVEDTESNQLVIKLILNKLGHNVFIASHGAEAIAFLEEQRQ 500
Query: 71 -FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
DI+ +D MP+M+GI ATR IR GI I I+ +T+ E+++ M+AG+D +KP+
Sbjct: 501 NIDIILMDVSMPIMDGITATRLIRQKGINIPIIALTAHALESDKTTCMKAGMDGFVSKPV 560
Query: 130 SVDKILPLMEDLMK 143
+I ++ L++
Sbjct: 561 RRQEIYEAIQSLVE 574
>gi|429101104|ref|ZP_19163078.1| Two-component sensor protein RcsC [Cronobacter turicensis 564]
gi|426287753|emb|CCJ89191.1| Two-component sensor protein RcsC [Cronobacter turicensis 564]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Cronobacter sakazakii ATCC BAA-894]
gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
Length = 973
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 844 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 902
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 903 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 955
>gi|421493180|ref|ZP_15940537.1| RCSC [Morganella morganii subsp. morganii KT]
gi|455738997|ref|YP_007505263.1| Two-component sensor protein RcsC [Morganella morganii subsp.
morganii KT]
gi|400192348|gb|EJO25487.1| RCSC [Morganella morganii subsp. morganii KT]
gi|455420560|gb|AGG30890.1| Two-component sensor protein RcsC [Morganella morganii subsp.
morganii KT]
Length = 948
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD R + S L GF A++G +A+D F + DI+ D MP MNG +
Sbjct: 827 LIVDDHPINRHLLSDQLHLFGFHTATADDGLDALD-FLETHEVDIILSDVNMPNMNGYDL 885
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR +R G+ + ++G+T+ ERE + +G++ C +KP+S+ + +M+
Sbjct: 886 TRTLREKGMTLPVIGITANALAEERERCLASGMNDCLSKPVSMQALRTMMQ 936
>gi|308049363|ref|YP_003912929.1| integral membrane sensor hybrid histidine kinase [Ferrimonas
balearica DSM 9799]
gi|307631553|gb|ADN75855.1| integral membrane sensor hybrid histidine kinase [Ferrimonas
balearica DSM 9799]
Length = 788
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIE 87
L+V+D R + LK +G +V +A NG++AV+ R+ G FD + +D MPVM+GIE
Sbjct: 673 LLVEDVDINRLVMKRLLKKMGAQVHLACNGQQAVERVRAEGDTFDAILMDIHMPVMDGIE 732
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
ATR+IR++ + I+ +T+ + R QAG TKP ++L ++ +
Sbjct: 733 ATRQIRALNPSMPIIALTANITREMRATCQQAGFHDFLTKPFKEQELLEVLNQI 786
>gi|333928303|ref|YP_004501882.1| integral membrane sensor hybrid histidine kinase [Serratia sp.
AS12]
gi|333933256|ref|YP_004506834.1| integral membrane sensor hybrid histidine kinase [Serratia
plymuthica AS9]
gi|386330126|ref|YP_006026296.1| integral membrane sensor hybrid histidine kinase [Serratia sp.
AS13]
gi|333474863|gb|AEF46573.1| integral membrane sensor hybrid histidine kinase [Serratia
plymuthica AS9]
gi|333492363|gb|AEF51525.1| integral membrane sensor hybrid histidine kinase [Serratia sp.
AS12]
gi|333962459|gb|AEG29232.1| integral membrane sensor hybrid histidine kinase [Serratia sp.
AS13]
Length = 956
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 6 GESSSKKAKIMENP------SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
G S+ + +M+ P +A N + LVVDD R + S L SLG++V A +G
Sbjct: 802 GTSTESGSTLMQLPLPVKASTADNGDIHLLVVDDHPINRRLLSDQLGSLGYQVVTANDGL 861
Query: 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119
+A+D+ DIV D MP M+G T+ +R ++GVT+ E++ M+A
Sbjct: 862 DALDVLNRNT-VDIVLTDVNMPNMDGYHLTQRLRQQHFTSPVIGVTANALAEEKQRCMEA 920
Query: 120 GLDLCHTKPLSVDKI 134
G+D C +KP++++ +
Sbjct: 921 GMDNCLSKPVTLETL 935
>gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 581
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 13/139 (9%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
G S K A+ ++ LR+ L+ +D+ R AL+ LG V+ A +G+EA+ +
Sbjct: 446 GPESEKAAE-----TSGGLRI--LLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAML 498
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAG 120
GA +D+V +D +MP +NG+EATR IRS ++ + +V +T+ E +R+ ++AG
Sbjct: 499 ERGA-YDLVLMDIQMPRLNGLEATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAG 557
Query: 121 LDLCHTKPLSVDKILPLME 139
+D TKP ++ ME
Sbjct: 558 MDEYVTKPFEPAELTAAME 576
>gi|449331932|gb|AGE97291.1| CAI-1 autoinducer sensor kinase/phosphatase [Vibrio fluvialis]
Length = 682
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ +RT ++ L+ G++V A +G++A+D S + FD++ +D EMP ++GIEA
Sbjct: 567 LVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVES-SDFDLILMDIEMPFIDGIEA 625
Query: 89 TREIRSMGI---KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IR I IVG T NS E ++G++ KP DK+L
Sbjct: 626 TRVIRDSDKPYRHIPIVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLL 675
>gi|429116300|ref|ZP_19177218.1| Two-component sensor protein RcsC [Cronobacter sakazakii 701]
gi|449307510|ref|YP_007439866.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Cronobacter sakazakii SP291]
gi|426319429|emb|CCK03331.1| Two-component sensor protein RcsC [Cronobacter sakazakii 701]
gi|449097543|gb|AGE85577.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Cronobacter sakazakii SP291]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|429111021|ref|ZP_19172791.1| Two-component sensor protein RcsC [Cronobacter malonaticus 507]
gi|426312178|emb|CCJ98904.1| Two-component sensor protein RcsC [Cronobacter malonaticus 507]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|429105434|ref|ZP_19167303.1| Two-component sensor protein RcsC [Cronobacter malonaticus 681]
gi|426292157|emb|CCJ93416.1| Two-component sensor protein RcsC [Cronobacter malonaticus 681]
Length = 946
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|424800371|ref|ZP_18225913.1| Two-component sensor protein RcsC [Cronobacter sakazakii 696]
gi|423236092|emb|CCK07783.1| Two-component sensor protein RcsC [Cronobacter sakazakii 696]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|389840222|ref|YP_006342306.1| sensor protein RcsC [Cronobacter sakazakii ES15]
gi|429121182|ref|ZP_19181825.1| Two-component sensor protein RcsC [Cronobacter sakazakii 680]
gi|387850698|gb|AFJ98795.1| sensor protein RcsC [Cronobacter sakazakii ES15]
gi|426324338|emb|CCK12562.1| Two-component sensor protein RcsC [Cronobacter sakazakii 680]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 820 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 878
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 879 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 931
>gi|381159487|ref|ZP_09868719.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Thiorhodovibrio sp. 970]
gi|380877551|gb|EIC19643.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Thiorhodovibrio sp. 970]
Length = 378
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L ALVVDD+ + L+ LG E A NG++A+++ S +FD+VF+D MP M+G
Sbjct: 248 LRALVVDDEPINANLLCRILEKLGHSPETACNGRQALEML-SAQRFDVVFMDVSMPEMDG 306
Query: 86 IEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
I+ATR IR + I I+ +T+ E +RE + AG+D +KP+ + +++
Sbjct: 307 IKATRLIRGNQNGDLDASIPIIAMTAHAMEGDREKCLAAGMDWYLSKPIDTKALHRVLDC 366
Query: 141 LMK 143
M+
Sbjct: 367 FME 369
>gi|383818273|ref|ZP_09973570.1| two component transcriptional regulator [Mycobacterium phlei
RIVM601174]
gi|383339202|gb|EID17543.1| two component transcriptional regulator [Mycobacterium phlei
RIVM601174]
Length = 230
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA++L + + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALELI-ANNRPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|320102491|ref|YP_004178082.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
gi|319749773|gb|ADV61533.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
Length = 1117
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDIVF 75
S+K L LVV+D+ ++ + LK LG VE A+NG++AV S K FD++F
Sbjct: 974 SSKPLEGEVLVVEDNLDVQRVIRFYLKRLGLTVESADNGQDAVQRVLSHPKGPDGFDLIF 1033
Query: 76 IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
D +MPVM+G E R +R G IV +T+ E +R + +G D +KP+ +++
Sbjct: 1034 TDVQMPVMDGFELVRRLRQAGRTKPIVALTARAMEDDRIRCLNSGCDDHLSKPIDFNQLA 1093
Query: 136 PLMEDLMK 143
L+ ++
Sbjct: 1094 GLVRSQLQ 1101
>gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli H736]
gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli H736]
Length = 775
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 646 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 704
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 705 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 758
>gi|357633167|ref|ZP_09131045.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
gi|357581721|gb|EHJ47054.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
Length = 1507
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ S L+S G VE+A NG++AV+ ++ +FD+V +D MPVM+G +A
Sbjct: 1383 LLVEDNQVNSLFASHILQSWGHTVEIANNGRQAVETLKT-REFDLVLMDALMPVMDGEQA 1441
Query: 89 TREIRS---MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TR IRS I IV T+ + +RE F+ G++ +KPL++D++
Sbjct: 1442 TRLIRSGEAGNPDIPIVAQTAYALQGDRERFLSVGMNDYISKPLNLDEL 1490
>gi|316931702|ref|YP_004106684.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
palustris DX-1]
gi|315599416|gb|ADU41951.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
palustris DX-1]
Length = 640
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIV 74
P+ +L LV +D+ + L LG + E+A +G+ AV +R+ G FD+V
Sbjct: 502 PAVPQAQLAILVAEDNDINALLIRALLSRLGHRAEIARDGRSAVASWRTARQAGTPFDLV 561
Query: 75 FIDKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+D +MPV++G+EA R+IR G ++ I+ +T+ +R+A AG++ KPL
Sbjct: 562 LMDVQMPVLDGLEAARQIRRCEAEQTGTRVPILALTANTLAEDRDACRTAGMNGVLIKPL 621
Query: 130 SVDKILPLMEDL 141
D++ ++ DL
Sbjct: 622 DPDRLAGILADL 633
>gi|367026229|ref|XP_003662399.1| histidine kinase [Myceliophthora thermophila ATCC 42464]
gi|347009667|gb|AEO57154.1| histidine kinase [Myceliophthora thermophila ATCC 42464]
Length = 917
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 6/134 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLF 65
E + +A++ S KNL LVV+D+ + + L+S+G K V++A NG EAV +
Sbjct: 533 EIGALQAELKMVSSIKNL----LVVEDNVINQKVILGMLRSIGLKNVDLASNGSEAVKMV 588
Query: 66 -RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A +DIV +D MPVM+G AT+EIRS GI + I+ +T+ + +RE ++ G++
Sbjct: 589 CGKPAAYDIVLMDISMPVMDGNAATKEIRSSGILVPIIAMTAYALKGDRERCLEHGMNDY 648
Query: 125 HTKPLSVDKILPLM 138
KP+ +++ ++
Sbjct: 649 VAKPVDKKRLIKVL 662
>gi|419886982|ref|ZP_14407600.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Escherichia coli O111:H8 str.
CVM9570]
gi|388364226|gb|EIL28095.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Escherichia coli O111:H8 str.
CVM9570]
Length = 556
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 427 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 485
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 486 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 539
>gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 928
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 784 DSEALSTALPPADKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 843
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
S DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 844 L-SKNPVDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 902
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 903 LSKPVTLD 910
>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1772
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 8/125 (6%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N+R+ L+ +D+ + + LK LGF+ + NG EAV + +D+V +D +MP
Sbjct: 1520 NVRV--LLAEDNIVNQKVAQSMLKKLGFRADTVANGAEAVKALET-LPYDLVLMDVQMPE 1576
Query: 83 MNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
M+G+EATR IR G +I I+ +T+ + +RE F++AG+D +KP+S+ ++ L
Sbjct: 1577 MDGMEATRLIRQPGSAVLNREIPIIAMTAHAMKGDRERFIEAGMDDYISKPVSLKSLIEL 1636
Query: 138 MEDLM 142
++ +
Sbjct: 1637 LDKWL 1641
>gi|359785042|ref|ZP_09288202.1| Hpt sensor hybrid histidine kinase [Halomonas sp. GFAJ-1]
gi|359297628|gb|EHK61856.1| Hpt sensor hybrid histidine kinase [Halomonas sp. GFAJ-1]
Length = 615
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A L+ L+V+D+ + + L +G V VAENG+EA+ S A FD+V +D +M
Sbjct: 490 ASRLQGHLLLVEDNPVNQMLARKQLTRMGHTVAVAENGQEALARMASEA-FDLVLMDMQM 548
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
PV++G+EATR++R+ G+ + I+ +T+ +R+ + AG+ TKP+ +
Sbjct: 549 PVLDGVEATRQLRARGVTLPILAMTANAMPEDRQRCLDAGMQDVITKPVKTE 600
>gi|406934088|gb|EKD68505.1| multi-sensor hybrid histidine kinase, partial [uncultured
bacterium]
Length = 234
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 45 LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104
LK +G + + AE+G AV++F +G ++DI+F+D +MPV++G EA R IR + + IV +
Sbjct: 5 LKKMGHRPQKAEDGLRAVEMFEAG-RYDIIFMDIQMPVLDGYEAARRIRKIDSGVPIVAI 63
Query: 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
T+ ++ + E M+AG++ KP+ ++K
Sbjct: 64 TANATKGDYEKCMEAGMNDYLCKPIDIEK 92
>gi|388544314|ref|ZP_10147602.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. M47T1]
gi|388277497|gb|EIK97071.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. M47T1]
Length = 1162
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 11/142 (7%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFA----LVVDDDCFIRTIHSM--ALKSLGFKVEVAENG 58
E + S ++ K+++ +++ ++F LVVDDD +R I ++ AL+ G VE+ NG
Sbjct: 1014 ESQLSQERQKMLKTARSRD-KVFEGRKILVVDDD--VRNIFALTSALEHKGAIVEIGRNG 1070
Query: 59 KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAF 116
+EA+D D+V +D MP M+G EATREIR + K+ I+ VT+ + ++E
Sbjct: 1071 REAIDKLNEVQDIDLVLMDVMMPEMDGYEATREIRKDTRWRKLPIIAVTAKAMKDDQERC 1130
Query: 117 MQAGLDLCHTKPLSVDKILPLM 138
+QAG + KP+ +D++ L+
Sbjct: 1131 LQAGANDYLAKPIDLDRLFSLI 1152
>gi|313683147|ref|YP_004060885.1| response regulator receiver and hpt phospho transfer protein
[Sulfuricurvum kujiense DSM 16994]
gi|313156007|gb|ADR34685.1| response regulator receiver and Hpt phospho transfer protein
[Sulfuricurvum kujiense DSM 16994]
Length = 333
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFID 77
P K + L L VDD+ R + + +G +V+ A++G EAVDLF S F I+ +D
Sbjct: 8 PDLKGINL--LFVDDNELSREVAVRMFQKVGIEVKTAQDGNEAVDLFLSKPDYFHIILMD 65
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MPVMNG EA R IR I I+ +++ + +RE ++AG++ KP+ + ++ +
Sbjct: 66 LQMPVMNGYEAARIIRKHDASIPIIALSAAFMDDDREKVLEAGMNDNLGKPIDMYRLFNM 125
Query: 138 M 138
+
Sbjct: 126 I 126
>gi|378580387|ref|ZP_09829044.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pantoea stewartii subsp. stewartii DC283]
gi|377816711|gb|EHT99809.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Pantoea stewartii subsp. stewartii DC283]
Length = 948
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 7 ESSSKKAKIMENPSAKNLR---LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
E+ S A + P + + + L+VDD R + S L +LG++V+ A++G +A++
Sbjct: 802 ETESTDALSLSGPVEEKIHNDDIMVLIVDDHPINRMLLSEQLGTLGYQVKTAQDGVDALN 861
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
+ S DIV D MP M+G + +R +G ++GVT+ E++ M AG+D
Sbjct: 862 VL-SRNTIDIVLTDVNMPNMDGYRLAQRLRQLGHVFPVIGVTANALAEEKQRCMDAGMDN 920
Query: 124 CHTKPLSVD 132
C +KP+++D
Sbjct: 921 CLSKPVTLD 929
>gi|218674083|ref|ZP_03523752.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli GR56]
Length = 163
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D+ + + + L+ G V NG+EAV + S I+ +D MPVMNG EA
Sbjct: 35 LVAEDNEVNQIVFTQILQGTGLSFRVVNNGQEAVAAWESHTP-RIIMMDVSMPVMNGHEA 93
Query: 89 TREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
TR IR G ++ I+GVT+ E++REA + AG+D +KP+S
Sbjct: 94 TRTIREREKGQGQRVPIIGVTAHALESDREACLDAGMDDYMSKPIS 139
>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 1095
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+ + LRL LVV+D+ R + + L +G VE A NG+EA+ + FD VF+D
Sbjct: 966 PARQGLRL--LVVEDNRVNRLMVARMLTMMGHAVETANNGEEALKTLET-QPFDAVFMDI 1022
Query: 79 EMPVMNGIEATREIRSM----GIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+MP MNG++ATR IR GI I ++ +T+ +RE F++ G+D KP+ +
Sbjct: 1023 QMPGMNGVQATRRIREADQGSGIDPAIPVIAITAHAMAGDREIFLEGGMDDYIAKPVELT 1082
Query: 133 KILPLMEDL 141
++ ++ L
Sbjct: 1083 ELEAVLARL 1091
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+++D + + L++ GF V +AENG+ +D F G +F V +D ++P M+G+
Sbjct: 7 LIIEDSPEFARLVAHHLEASGFSVHLAENGRAGLDAF-GGRRFSAVLLDLQLPDMDGLAV 65
Query: 89 TREIRSMGIKIKIVGVTSLN 108
++ I ++ V+ N
Sbjct: 66 LADMADRSDSIPLIVVSGSN 85
>gi|374299669|ref|YP_005051308.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1066
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E ++ ++ +M P LR+ LV +D+ + + L +G V NG++A+DL
Sbjct: 925 EQAAGQSGLMTVP----LRI--LVAEDNEINQLVMRDWLDEMGHMVICVPNGRKAIDLLS 978
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRS---MGIK--IKIVGVTSLNSEAEREAFMQAGL 121
G +FD+VF+D +MP M+GIEATR IR G+ I IV +T+ + +RE F+ AG+
Sbjct: 979 QG-RFDLVFMDAQMPEMDGIEATRIIRRSPPQGVDPAIPIVALTAYALKGDRERFLAAGM 1037
Query: 122 DLCHTKPLSVDKI 134
D +KPL +++
Sbjct: 1038 DDYLSKPLDFEEL 1050
>gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
Length = 1092
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Query: 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
F L+VDD+ R + S L GFK ++A +G A++ ++ +D++F+D +MPVM+G+
Sbjct: 843 FILIVDDNTINRQVASQILMKSGFKTDLAFSGPAAIEKVKN-HDYDLIFMDIQMPVMDGV 901
Query: 87 EATREIRSMGIKI-KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
ATREI+ + KI IV +T+ + + +R+ F+ G+D KP+ +L +++
Sbjct: 902 TATREIKKLPKKIPPIVAMTAYSMKEDRQRFLDLGMDDYLAKPIVSSLLLEVIQ 955
>gi|95928312|ref|ZP_01311060.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
DSM 684]
gi|95135583|gb|EAT17234.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
DSM 684]
Length = 1001
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+DD T+ + L+ L V+ +G A++ + + +D+V +D MP M+G+ A
Sbjct: 880 LLVEDDDATATLMKVRLQELQLCVDRVSDGLAAIERCLNQS-YDLVLMDYHMPQMDGLTA 938
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T +IR G+ + IVG+T+ + + E F Q GL+ C TKP+ ++++ ++ + +
Sbjct: 939 TEQIRDAGVTVPIVGLTAFSDGRQWEKFQQVGLNACLTKPVKIEQLRQVIAEFL 992
>gi|432802437|ref|ZP_20036416.1| sensor kinase RcsC [Escherichia coli KTE84]
gi|431348226|gb|ELG35084.1| sensor kinase RcsC [Escherichia coli KTE84]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432899237|ref|ZP_20109929.1| sensor kinase RcsC [Escherichia coli KTE192]
gi|433029194|ref|ZP_20217053.1| sensor kinase RcsC [Escherichia coli KTE109]
gi|431426889|gb|ELH08933.1| sensor kinase RcsC [Escherichia coli KTE192]
gi|431542934|gb|ELI17930.1| sensor kinase RcsC [Escherichia coli KTE109]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|386392025|ref|ZP_10076806.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385732903|gb|EIG53101.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1506
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ S L+S G VE+A NG++AV+ ++ +FD+V +D MPVM+G +A
Sbjct: 1383 LLVEDNQVNSLFASHILQSWGHTVEIANNGRQAVETLKT-REFDLVLMDALMPVMDGEQA 1441
Query: 89 TREIRS---MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TR IRS I IV T+ + +RE F+ G++ +KPL++D++
Sbjct: 1442 TRLIRSGQAGNPDIPIVAQTAYALQGDRERFLSVGMNDYISKPLNLDEL 1490
>gi|406891851|gb|EKD37359.1| PAS/GAF protein, partial [uncultured bacterium]
Length = 135
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 15 IMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDI 73
+ +P + L L L+ +DD IR + + L+ L F V+ AE+G + V+++R G ++D+
Sbjct: 3 VAPDPGGQELAGLRLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQG-EYDL 61
Query: 74 VFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+ +D +MP M+G +ATR IR G +I I+ +T+ + ++ + AG+D +KP++
Sbjct: 62 ILMDVQMPRMDGFQATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPIN 120
>gi|346224752|ref|ZP_08845894.1| sensory box histidine kinase/response regulator [Anaerophaga
thermohalophila DSM 12881]
Length = 131
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + L GFK+++A NG+EA+ L K+DI+ +D MPVM+G+E
Sbjct: 7 LLVEDNVLNQKLIYLTLSKYGFKIDIANNGREALKLLED-KKYDIILMDLMMPVMDGLET 65
Query: 89 TREIR-------SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
TR+IR S+ I I+G+T+ +++R+ ++ G+D KP V++
Sbjct: 66 TRQIRKNEKKSGSVNRNI-IIGLTANTYDSDRDRCIKEGMDEYMAKPFDVER 116
>gi|312865265|ref|ZP_07725493.1| putative response regulator MprA [Streptococcus downei F0415]
gi|311099376|gb|EFQ57592.1| putative response regulator MprA [Streptococcus downei F0415]
Length = 231
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + ++ AL+ G++V+ A NG+EAVDL R A +D++ +D MPV G+EA
Sbjct: 6 LLAEDEEQLGRVYRAALEHQGYQVDQAVNGQEAVDLARENA-YDLMILDIMMPVKTGLEA 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
EIR G + ++ +T+++ +R + AG D TKP+S+ ++L
Sbjct: 65 LSEIRDSGDRTHVIMLTAMSEINDRVTGLDAGADEYLTKPISLKELL 111
>gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM
20016]
gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM
1112]
gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3]
gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri DSM 20016]
gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM
1112]
gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3]
gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
Length = 221
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D+ + + S A+ + G++V++A NG+EAV+ + A +D++ +D MPV +G+EA
Sbjct: 4 LVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENA-YDVIILDIMMPVKSGLEA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+EIR+ G + I+ +T++ E ++ + AG D +KP S+ ++L
Sbjct: 63 LKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLSKPFSLKELL 109
>gi|451971858|ref|ZP_21925073.1| hypothetical protein C408_1685 [Vibrio alginolyticus E0666]
gi|451932216|gb|EMD79895.1| hypothetical protein C408_1685 [Vibrio alginolyticus E0666]
Length = 533
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ EVAENG+ AV++F+ FDI+ +D MP+M+G EA
Sbjct: 415 LLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGFEA 474
Query: 89 TREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+R+IR S G+ K I+ +T+ + + + +G+D KP+ +K+L +E+
Sbjct: 475 SRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIEN 531
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+AK L LVVDD+ + I + + GF ++A NG+EAVD+F+ ++ ++ +D
Sbjct: 244 PNAKTLPKI-LVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQN-QYSLILMDC 301
Query: 79 EMPVMNGIEATREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
MPVM+G EAT+ IR + I+I I+ +T+ + + + G+D KP
Sbjct: 302 MMPVMDGFEATKMIRQIEAKEKRTIRIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 358
>gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli CFT073]
gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 83972]
gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli M605]
gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA206]
gi|386619839|ref|YP_006139419.1| sensory protein [Escherichia coli NA114]
gi|386630015|ref|YP_006149735.1| hybrid sensory kinase in two-component [Escherichia coli str.
'clone D i2']
gi|386634935|ref|YP_006154654.1| hybrid sensory kinase in two-component [Escherichia coli str.
'clone D i14']
gi|386639793|ref|YP_006106591.1| capsular synthesis regulator component C [Escherichia coli ABU
83972]
gi|417286435|ref|ZP_12073724.1| sensor kinase protein RcsC [Escherichia coli TW07793]
gi|419002769|ref|ZP_13550296.1| his Kinase A domain protein [Escherichia coli DEC1B]
gi|419008463|ref|ZP_13555894.1| his Kinase A domain protein [Escherichia coli DEC1C]
gi|419014143|ref|ZP_13561494.1| sensor kinase protein RcsC [Escherichia coli DEC1D]
gi|419019146|ref|ZP_13566453.1| his Kinase A domain protein [Escherichia coli DEC1E]
gi|419024648|ref|ZP_13571874.1| sensor kinase protein RcsC [Escherichia coli DEC2A]
gi|419029688|ref|ZP_13576851.1| his Kinase A domain protein [Escherichia coli DEC2C]
gi|419040374|ref|ZP_13587402.1| his Kinase A domain protein [Escherichia coli DEC2E]
gi|419701054|ref|ZP_14228656.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli SCI-07]
gi|432398046|ref|ZP_19640827.1| sensor kinase RcsC [Escherichia coli KTE25]
gi|432407274|ref|ZP_19649983.1| sensor kinase RcsC [Escherichia coli KTE28]
gi|432412432|ref|ZP_19655095.1| sensor kinase RcsC [Escherichia coli KTE39]
gi|432422566|ref|ZP_19665111.1| sensor kinase RcsC [Escherichia coli KTE178]
gi|432432507|ref|ZP_19674936.1| sensor kinase RcsC [Escherichia coli KTE187]
gi|432436945|ref|ZP_19679333.1| sensor kinase RcsC [Escherichia coli KTE188]
gi|432441715|ref|ZP_19684055.1| sensor kinase RcsC [Escherichia coli KTE189]
gi|432446829|ref|ZP_19689128.1| sensor kinase RcsC [Escherichia coli KTE191]
gi|432457327|ref|ZP_19699511.1| sensor kinase RcsC [Escherichia coli KTE201]
gi|432496328|ref|ZP_19738124.1| sensor kinase RcsC [Escherichia coli KTE214]
gi|432500705|ref|ZP_19742462.1| sensor kinase RcsC [Escherichia coli KTE216]
gi|432505066|ref|ZP_19746790.1| sensor kinase RcsC [Escherichia coli KTE220]
gi|432524417|ref|ZP_19761545.1| sensor kinase RcsC [Escherichia coli KTE230]
gi|432554308|ref|ZP_19791031.1| sensor kinase RcsC [Escherichia coli KTE47]
gi|432559469|ref|ZP_19796138.1| sensor kinase RcsC [Escherichia coli KTE49]
gi|432569299|ref|ZP_19805811.1| sensor kinase RcsC [Escherichia coli KTE53]
gi|432593485|ref|ZP_19829802.1| sensor kinase RcsC [Escherichia coli KTE60]
gi|432608106|ref|ZP_19844291.1| sensor kinase RcsC [Escherichia coli KTE67]
gi|432651792|ref|ZP_19887546.1| sensor kinase RcsC [Escherichia coli KTE87]
gi|432695080|ref|ZP_19930279.1| sensor kinase RcsC [Escherichia coli KTE162]
gi|432711270|ref|ZP_19946330.1| sensor kinase RcsC [Escherichia coli KTE6]
gi|432723670|ref|ZP_19958590.1| sensor kinase RcsC [Escherichia coli KTE17]
gi|432728257|ref|ZP_19963136.1| sensor kinase RcsC [Escherichia coli KTE18]
gi|432741951|ref|ZP_19976670.1| sensor kinase RcsC [Escherichia coli KTE23]
gi|432784185|ref|ZP_20018364.1| sensor kinase RcsC [Escherichia coli KTE63]
gi|432845189|ref|ZP_20078022.1| sensor kinase RcsC [Escherichia coli KTE141]
gi|432895236|ref|ZP_20106956.1| sensor kinase RcsC [Escherichia coli KTE165]
gi|432919683|ref|ZP_20123797.1| sensor kinase RcsC [Escherichia coli KTE173]
gi|432927585|ref|ZP_20129014.1| sensor kinase RcsC [Escherichia coli KTE175]
gi|432981647|ref|ZP_20170422.1| sensor kinase RcsC [Escherichia coli KTE211]
gi|432991258|ref|ZP_20179922.1| sensor kinase RcsC [Escherichia coli KTE217]
gi|432995955|ref|ZP_20184560.1| sensor kinase RcsC [Escherichia coli KTE218]
gi|433000542|ref|ZP_20189067.1| sensor kinase RcsC [Escherichia coli KTE223]
gi|433014484|ref|ZP_20202832.1| sensor kinase RcsC [Escherichia coli KTE104]
gi|433024102|ref|ZP_20212090.1| sensor kinase RcsC [Escherichia coli KTE106]
gi|433058738|ref|ZP_20245784.1| sensor kinase RcsC [Escherichia coli KTE124]
gi|433097089|ref|ZP_20283273.1| sensor kinase RcsC [Escherichia coli KTE139]
gi|433106511|ref|ZP_20292486.1| sensor kinase RcsC [Escherichia coli KTE148]
gi|433111469|ref|ZP_20297334.1| sensor kinase RcsC [Escherichia coli KTE150]
gi|433116153|ref|ZP_20301944.1| sensor kinase RcsC [Escherichia coli KTE153]
gi|433125821|ref|ZP_20311380.1| sensor kinase RcsC [Escherichia coli KTE160]
gi|433139890|ref|ZP_20325146.1| sensor kinase RcsC [Escherichia coli KTE167]
gi|433149807|ref|ZP_20334828.1| sensor kinase RcsC [Escherichia coli KTE174]
gi|433208393|ref|ZP_20392067.1| sensor kinase RcsC [Escherichia coli KTE97]
gi|433213130|ref|ZP_20396720.1| sensor kinase RcsC [Escherichia coli KTE99]
gi|433323692|ref|ZP_20401023.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli J96]
gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073]
gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 83972]
gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU
83972]
gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli M605]
gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
C) [Escherichia coli TA206]
gi|333970340|gb|AEG37145.1| sensory protein [Escherichia coli NA114]
gi|355420914|gb|AER85111.1| hybrid sensory kinase in two-component [Escherichia coli str.
'clone D i2']
gi|355425834|gb|AER90030.1| hybrid sensory kinase in two-component [Escherichia coli str.
'clone D i14']
gi|377843981|gb|EHU09018.1| his Kinase A domain protein [Escherichia coli DEC1C]
gi|377847648|gb|EHU12646.1| his Kinase A domain protein [Escherichia coli DEC1B]
gi|377857481|gb|EHU22332.1| sensor kinase protein RcsC [Escherichia coli DEC1D]
gi|377860200|gb|EHU25026.1| his Kinase A domain protein [Escherichia coli DEC1E]
gi|377863432|gb|EHU28237.1| sensor kinase protein RcsC [Escherichia coli DEC2A]
gi|377877870|gb|EHU42459.1| his Kinase A domain protein [Escherichia coli DEC2C]
gi|377890414|gb|EHU54871.1| his Kinase A domain protein [Escherichia coli DEC2E]
gi|380347800|gb|EIA36086.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli SCI-07]
gi|386249894|gb|EII96063.1| sensor kinase protein RcsC [Escherichia coli TW07793]
gi|430916150|gb|ELC37228.1| sensor kinase RcsC [Escherichia coli KTE25]
gi|430930033|gb|ELC50542.1| sensor kinase RcsC [Escherichia coli KTE28]
gi|430934839|gb|ELC55186.1| sensor kinase RcsC [Escherichia coli KTE39]
gi|430944178|gb|ELC64277.1| sensor kinase RcsC [Escherichia coli KTE178]
gi|430952932|gb|ELC71846.1| sensor kinase RcsC [Escherichia coli KTE187]
gi|430962276|gb|ELC80133.1| sensor kinase RcsC [Escherichia coli KTE188]
gi|430966169|gb|ELC83577.1| sensor kinase RcsC [Escherichia coli KTE189]
gi|430973102|gb|ELC90070.1| sensor kinase RcsC [Escherichia coli KTE191]
gi|430982061|gb|ELC98780.1| sensor kinase RcsC [Escherichia coli KTE201]
gi|431023586|gb|ELD36781.1| sensor kinase RcsC [Escherichia coli KTE214]
gi|431028282|gb|ELD41326.1| sensor kinase RcsC [Escherichia coli KTE216]
gi|431038160|gb|ELD49129.1| sensor kinase RcsC [Escherichia coli KTE220]
gi|431051533|gb|ELD61196.1| sensor kinase RcsC [Escherichia coli KTE230]
gi|431084113|gb|ELD90284.1| sensor kinase RcsC [Escherichia coli KTE47]
gi|431090689|gb|ELD96440.1| sensor kinase RcsC [Escherichia coli KTE49]
gi|431100013|gb|ELE05029.1| sensor kinase RcsC [Escherichia coli KTE53]
gi|431127585|gb|ELE29885.1| sensor kinase RcsC [Escherichia coli KTE60]
gi|431137992|gb|ELE39832.1| sensor kinase RcsC [Escherichia coli KTE67]
gi|431190239|gb|ELE89639.1| sensor kinase RcsC [Escherichia coli KTE87]
gi|431233662|gb|ELF29249.1| sensor kinase RcsC [Escherichia coli KTE162]
gi|431248950|gb|ELF43125.1| sensor kinase RcsC [Escherichia coli KTE6]
gi|431266224|gb|ELF57786.1| sensor kinase RcsC [Escherichia coli KTE17]
gi|431273946|gb|ELF65020.1| sensor kinase RcsC [Escherichia coli KTE18]
gi|431283642|gb|ELF74501.1| sensor kinase RcsC [Escherichia coli KTE23]
gi|431328608|gb|ELG15912.1| sensor kinase RcsC [Escherichia coli KTE63]
gi|431394611|gb|ELG78144.1| sensor kinase RcsC [Escherichia coli KTE141]
gi|431421603|gb|ELH03815.1| sensor kinase RcsC [Escherichia coli KTE165]
gi|431443727|gb|ELH24753.1| sensor kinase RcsC [Escherichia coli KTE173]
gi|431444108|gb|ELH25132.1| sensor kinase RcsC [Escherichia coli KTE175]
gi|431490956|gb|ELH70563.1| sensor kinase RcsC [Escherichia coli KTE211]
gi|431495340|gb|ELH74926.1| sensor kinase RcsC [Escherichia coli KTE217]
gi|431505515|gb|ELH84121.1| sensor kinase RcsC [Escherichia coli KTE218]
gi|431508528|gb|ELH86800.1| sensor kinase RcsC [Escherichia coli KTE223]
gi|431530582|gb|ELI07261.1| sensor kinase RcsC [Escherichia coli KTE104]
gi|431535795|gb|ELI12134.1| sensor kinase RcsC [Escherichia coli KTE106]
gi|431568993|gb|ELI41955.1| sensor kinase RcsC [Escherichia coli KTE124]
gi|431615437|gb|ELI84566.1| sensor kinase RcsC [Escherichia coli KTE139]
gi|431627218|gb|ELI95629.1| sensor kinase RcsC [Escherichia coli KTE148]
gi|431628773|gb|ELI97149.1| sensor kinase RcsC [Escherichia coli KTE150]
gi|431633915|gb|ELJ02177.1| sensor kinase RcsC [Escherichia coli KTE153]
gi|431645055|gb|ELJ12708.1| sensor kinase RcsC [Escherichia coli KTE160]
gi|431660203|gb|ELJ27091.1| sensor kinase RcsC [Escherichia coli KTE167]
gi|431670476|gb|ELJ36829.1| sensor kinase RcsC [Escherichia coli KTE174]
gi|431729678|gb|ELJ93297.1| sensor kinase RcsC [Escherichia coli KTE97]
gi|431734155|gb|ELJ97556.1| sensor kinase RcsC [Escherichia coli KTE99]
gi|432347790|gb|ELL42247.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli J96]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|408390504|gb|EKJ69899.1| hypothetical protein FPSE_09922 [Fusarium pseudograminearum CS3096]
Length = 1270
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 19/156 (12%)
Query: 4 GEGESSSKKAKIMENPSAKNL--RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
G + + K A+ + P+ + + L+VDD+ + +M +K GF E AENG+EA
Sbjct: 1114 GNVDQNGKSARESQKPNKPEMPNKAHVLLVDDNKINLNLLTMFMKKCGFTYEEAENGEEA 1173
Query: 62 VDLFRSGA------------KFDIVFIDKEMPVMNGIEATREIRSMGIKIK-----IVGV 104
V+ F +FD V +D MPVMNGIEAT+ IR + K K + +
Sbjct: 1174 VETFTKSTIGKGEPRGPIKKRFDYVLMDISMPVMNGIEATKRIRMIEAKYKVPRTTVFAL 1233
Query: 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
T L S R + AG+DL KP+ ++ ++E+
Sbjct: 1234 TGLASADARLDAISAGVDLFLPKPVKFAELKTMLEN 1269
>gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli 536]
gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
F11]
gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli NC101]
gi|432381959|ref|ZP_19624902.1| sensor kinase RcsC [Escherichia coli KTE15]
gi|432387771|ref|ZP_19630660.1| sensor kinase RcsC [Escherichia coli KTE16]
gi|432466379|ref|ZP_19708467.1| sensor kinase RcsC [Escherichia coli KTE205]
gi|432471586|ref|ZP_19713632.1| sensor kinase RcsC [Escherichia coli KTE206]
gi|432514521|ref|ZP_19751745.1| sensor kinase RcsC [Escherichia coli KTE224]
gi|432584474|ref|ZP_19820868.1| sensor kinase RcsC [Escherichia coli KTE57]
gi|432612029|ref|ZP_19848191.1| sensor kinase RcsC [Escherichia coli KTE72]
gi|432646791|ref|ZP_19882581.1| sensor kinase RcsC [Escherichia coli KTE86]
gi|432656373|ref|ZP_19892077.1| sensor kinase RcsC [Escherichia coli KTE93]
gi|432699650|ref|ZP_19934804.1| sensor kinase RcsC [Escherichia coli KTE169]
gi|432713998|ref|ZP_19949038.1| sensor kinase RcsC [Escherichia coli KTE8]
gi|432732953|ref|ZP_19967786.1| sensor kinase RcsC [Escherichia coli KTE45]
gi|432746262|ref|ZP_19980928.1| sensor kinase RcsC [Escherichia coli KTE43]
gi|432760039|ref|ZP_19994533.1| sensor kinase RcsC [Escherichia coli KTE46]
gi|432905478|ref|ZP_20114345.1| sensor kinase RcsC [Escherichia coli KTE194]
gi|432938571|ref|ZP_20136849.1| sensor kinase RcsC [Escherichia coli KTE183]
gi|432972422|ref|ZP_20161289.1| sensor kinase RcsC [Escherichia coli KTE207]
gi|432985978|ref|ZP_20174701.1| sensor kinase RcsC [Escherichia coli KTE215]
gi|433039219|ref|ZP_20226818.1| sensor kinase RcsC [Escherichia coli KTE113]
gi|433073419|ref|ZP_20260073.1| sensor kinase RcsC [Escherichia coli KTE129]
gi|433078396|ref|ZP_20264934.1| sensor kinase RcsC [Escherichia coli KTE131]
gi|433083177|ref|ZP_20269634.1| sensor kinase RcsC [Escherichia coli KTE133]
gi|433101765|ref|ZP_20287851.1| sensor kinase RcsC [Escherichia coli KTE145]
gi|433120816|ref|ZP_20306488.1| sensor kinase RcsC [Escherichia coli KTE157]
gi|433144809|ref|ZP_20329953.1| sensor kinase RcsC [Escherichia coli KTE168]
gi|433183891|ref|ZP_20368141.1| sensor kinase RcsC [Escherichia coli KTE85]
gi|433189003|ref|ZP_20373101.1| sensor kinase RcsC [Escherichia coli KTE88]
gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536]
gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
F11]
gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli NC101]
gi|430906419|gb|ELC28019.1| sensor kinase RcsC [Escherichia coli KTE16]
gi|430907434|gb|ELC28932.1| sensor kinase RcsC [Escherichia coli KTE15]
gi|430993185|gb|ELD09539.1| sensor kinase RcsC [Escherichia coli KTE205]
gi|430997975|gb|ELD14224.1| sensor kinase RcsC [Escherichia coli KTE206]
gi|431041917|gb|ELD52412.1| sensor kinase RcsC [Escherichia coli KTE224]
gi|431115833|gb|ELE19327.1| sensor kinase RcsC [Escherichia coli KTE57]
gi|431148203|gb|ELE49494.1| sensor kinase RcsC [Escherichia coli KTE72]
gi|431180828|gb|ELE80715.1| sensor kinase RcsC [Escherichia coli KTE86]
gi|431190843|gb|ELE90229.1| sensor kinase RcsC [Escherichia coli KTE93]
gi|431243399|gb|ELF37786.1| sensor kinase RcsC [Escherichia coli KTE169]
gi|431256775|gb|ELF49710.1| sensor kinase RcsC [Escherichia coli KTE8]
gi|431276140|gb|ELF67167.1| sensor kinase RcsC [Escherichia coli KTE45]
gi|431291301|gb|ELF81814.1| sensor kinase RcsC [Escherichia coli KTE43]
gi|431307693|gb|ELF95983.1| sensor kinase RcsC [Escherichia coli KTE46]
gi|431432713|gb|ELH14390.1| sensor kinase RcsC [Escherichia coli KTE194]
gi|431463306|gb|ELH43499.1| sensor kinase RcsC [Escherichia coli KTE183]
gi|431481924|gb|ELH61631.1| sensor kinase RcsC [Escherichia coli KTE207]
gi|431500215|gb|ELH79231.1| sensor kinase RcsC [Escherichia coli KTE215]
gi|431551319|gb|ELI25305.1| sensor kinase RcsC [Escherichia coli KTE113]
gi|431587693|gb|ELI59045.1| sensor kinase RcsC [Escherichia coli KTE129]
gi|431596626|gb|ELI66578.1| sensor kinase RcsC [Escherichia coli KTE131]
gi|431602069|gb|ELI71578.1| sensor kinase RcsC [Escherichia coli KTE133]
gi|431619359|gb|ELI88283.1| sensor kinase RcsC [Escherichia coli KTE145]
gi|431642417|gb|ELJ10140.1| sensor kinase RcsC [Escherichia coli KTE157]
gi|431661504|gb|ELJ28317.1| sensor kinase RcsC [Escherichia coli KTE168]
gi|431705709|gb|ELJ70299.1| sensor kinase RcsC [Escherichia coli KTE88]
gi|431706141|gb|ELJ70715.1| sensor kinase RcsC [Escherichia coli KTE85]
Length = 949
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|433198854|ref|ZP_20382756.1| sensor kinase RcsC [Escherichia coli KTE94]
gi|431721558|gb|ELJ85552.1| sensor kinase RcsC [Escherichia coli KTE94]
Length = 949
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|432974367|ref|ZP_20163206.1| sensor kinase RcsC [Escherichia coli KTE209]
gi|433087899|ref|ZP_20274270.1| sensor kinase RcsC [Escherichia coli KTE137]
gi|431489228|gb|ELH68856.1| sensor kinase RcsC [Escherichia coli KTE209]
gi|431604410|gb|ELI73819.1| sensor kinase RcsC [Escherichia coli KTE137]
Length = 949
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|406660807|ref|ZP_11068935.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Cecembia lonarensis
LW9]
gi|405555360|gb|EKB50394.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Cecembia lonarensis
LW9]
Length = 967
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
AK + L+V+D+ M + LG+ V+VA NG EAV++ + G FD++ +D +M
Sbjct: 835 AKRCPMEILLVEDNTTNLIFMKMLMDQLGYTVKVARNGLEAVEMIQEGHIFDLILMDIQM 894
Query: 81 PVMNGIEATREIRSMGIKIK------IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P MNG++ATR IR KIK IVG+++ + E+ + +G+D TKP+S+ +
Sbjct: 895 PKMNGLDATRAIR----KIKGQESTMIVGLSANAFREDVESALASGMDHYLTKPVSIHDV 950
Query: 135 LPLMEDLMK 143
++ + K
Sbjct: 951 ARVIAERFK 959
>gi|416335407|ref|ZP_11672100.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
Length = 949
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
Length = 1200
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + LKS G++V+VAENG+ A+D+ +FD V +D +MPVM+G+ A
Sbjct: 1082 LLVEDNFINQQVATELLKSAGYEVDVAENGQIAIDMIEE-KEFDAVLMDIQMPVMDGLTA 1140
Query: 89 TREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
T+E+R ++ I+ +T+ +RE + AG++ TKP+ ++++
Sbjct: 1141 TKELRKRYSSTELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELF 1189
Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV-DLFRSGAKFDIVFIDKEMPVMN 84
L LVVDD+ I+S ++ F+V+ A +G EA+ L RS D++ +D MP M+
Sbjct: 936 LKTLVVDDNPTALQIYSSVMQDFHFEVDTAASGSEAIYKLGRSSV--DLLLLDWMMPEMD 993
Query: 85 GIEATREIRSM 95
GI E+ M
Sbjct: 994 GIAVIDELDRM 1004
>gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli ED1a]
gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|422375584|ref|ZP_16455849.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|422382199|ref|ZP_16462360.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli ED1a]
gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
Length = 933
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|417319702|ref|ZP_12106251.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
10329]
gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
10329]
Length = 576
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+ S+ KI N K L L L+V+D + + + L LG V +A +G EA+
Sbjct: 440 NQSRPVKIEHNRPNKALNL--LIVEDTQSNQLVIKLILNKLGHNVHIASHGAEALTFLEE 497
Query: 68 G-AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+ D++ +D MPVM+GI ATR IR GI I IV +T+ E++++ + AG+D +
Sbjct: 498 NDNRIDMILMDVSMPVMDGITATRLIRKKGITIPIVALTAHALESDKDKCLDAGMDSFVS 557
Query: 127 KPLSVDKILPLMEDLMK 143
KP+ I ++ L++
Sbjct: 558 KPVRRQDIYEAIQSLIE 574
>gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O127:H6 str. E2348/69]
gi|222156975|ref|YP_002557114.1| Sensor kinase protein rcsC [Escherichia coli LF82]
gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|387617579|ref|YP_006120601.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O83:H1 str. NRG 857C]
gi|387830153|ref|YP_003350090.1| two-component sensor kinase [Escherichia coli SE15]
gi|417662831|ref|ZP_12312412.1| two-component sensor protein RcsC [Escherichia coli AA86]
gi|418997572|ref|ZP_13545166.1| his Kinase A domain protein [Escherichia coli DEC1A]
gi|422365126|ref|ZP_16445630.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|422370204|ref|ZP_16450598.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 16-3]
gi|442607996|ref|ZP_21022756.1| Two-component sensor protein RcsC [Escherichia coli Nissle 1917]
gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O127:H6 str. E2348/69]
gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82]
gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15]
gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Escherichia coli O83:H1 str. NRG 857C]
gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 16-3]
gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86]
gi|377843399|gb|EHU08439.1| his Kinase A domain protein [Escherichia coli DEC1A]
gi|441710601|emb|CCQ08733.1| Two-component sensor protein RcsC [Escherichia coli Nissle 1917]
Length = 933
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|414168163|ref|ZP_11424367.1| hypothetical protein HMPREF9696_02222 [Afipia clevelandensis ATCC
49720]
gi|410888206|gb|EKS36010.1| hypothetical protein HMPREF9696_02222 [Afipia clevelandensis ATCC
49720]
Length = 907
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 20 SAKNLRLFA-----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
S K +RL + L+VDD F R + + LK+ G++V +A+NG+E + + RSG FD+V
Sbjct: 772 SRKEMRLSSTAQTVLLVDDSAFFRNMLAPVLKAAGYRVTLAQNGQEGLAVLRSGNTFDVV 831
Query: 75 FIDKEMPVMNGI---EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121
D EMP MNG EA R R M + I+ ++S+ S A E QAG
Sbjct: 832 LTDIEMPEMNGFEFAEAIRADRKME-AMPIIALSSVVSPAAIERGRQAGF 880
>gi|392423698|ref|YP_006464692.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391353661|gb|AFM39360.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 914
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
Query: 20 SAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
+A+N + A L+V+D + I + LK LG+ +A NGK+AV+L + K+DI+F
Sbjct: 781 TAENYKQMADLSILLVEDKEVNQRIELIMLKRLGYSANIAVNGKQAVELCDT-RKYDIIF 839
Query: 76 IDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
+D +MPVM+G EAT IR M K I+ +T+ E +RE + AG+D +KP+++
Sbjct: 840 MDCQMPVMDGYEATDRIRKMSSLNKHSPIIAMTAHAMEGDRERCVAAGMDDYISKPVTL 898
>gi|291568139|dbj|BAI90411.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
Length = 665
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LVVDD+ IR I +L+S ++V VA NG EA+ ++ K D V ID MPVM G
Sbjct: 544 LVVDDEEPIREITKASLESFQYQVLVAGNGVEAMKIYSQYLDKIDCVVIDIMMPVMGGKT 603
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
RE++S+ KIKIVG++ S + + G+D+ +KP + ++L +++ + ++
Sbjct: 604 TIRELKSLNPKIKIVGISGYFSVDIAKDIAELGVDIFLSKPFTTQELLEVLQKCLNSS 661
>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
Length = 929
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 8/126 (6%)
Query: 14 KIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDI 73
K +EN K+ ++ L+V+D+ + ++ G VEVAENG+ A+++ S +FD+
Sbjct: 665 KPVENAQFKDRKI--LLVEDNSTNIIVAKGLIQMYGPTVEVAENGELALNIL-SKQRFDL 721
Query: 74 VFIDKEMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+F+D +MPVM+G E TR IRS + +I I+ +T+ +REA + AG+D +KP
Sbjct: 722 IFMDCQMPVMDGYECTRLIRSEEASVINHRIPIIALTANAMRGDREACLAAGMDDYISKP 781
Query: 129 LSVDKI 134
+ D I
Sbjct: 782 VDADTI 787
>gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
Length = 692
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR---SGAKFDIVFIDKEMPVMNG 85
L+ +D+ + + + L+ G V + NG+EA+ +F+ +G FD+V +D MPV +G
Sbjct: 575 LLAEDNKANQAVLQILLEKQGHHVSIVSNGEEAISIFKHQTNGCFFDVVLMDVSMPVKDG 634
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
I AT E+R +GI++ I+ +T+ E E+E ++AG++ +KP+
Sbjct: 635 ISATTELRKLGIELPIIAITAHAMETEKEMCLEAGMNDFISKPI 678
>gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC
49540]
gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC
49540]
Length = 225
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
+++ L+ +D+ + + MA++ G++V+ ENG+ AV+L + A +D + +D MP+
Sbjct: 3 IKMRILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNA-YDAIILDIMMPIK 61
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
NGIEA +EIR+ G + I+ +T++ E +R + +G D TKP S+ ++L + L
Sbjct: 62 NGIEALKEIRARGDRTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRSL 119
>gi|340923587|gb|EGS18490.1| histidine kinase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1343
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLG-FKVEVAENGKEAVDLFR----SGAKFDI 73
PS K +L LV DD+ + S LK + V +A++G+EA +L + +G +FD+
Sbjct: 1158 PSEKGGKLRVLVADDNTVNIEVVSRLLKLESIYDVTIAKDGQEAYELVKNAMETGERFDV 1217
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+F+D +MP ++G+++TR IR++G IV +T+ + E+ + M++G++ +KP+
Sbjct: 1218 IFMDIQMPNLDGLQSTRLIRALGYNAPIVALTAFSEESNVKECMESGMNEFLSKPI 1273
>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 1521
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVV+D+ R + L LG + AE+G+EA+++ + A FD + +D +MP ++G
Sbjct: 1400 LSILVVEDERTNRAVAQRLLGKLGHEAACAESGEEAIEILATAA-FDCILMDIQMPGLDG 1458
Query: 86 IEATREIR-SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+E TR IR ++G+ I I+ +T+ E +R+ F+ AG+ KP LP ++D
Sbjct: 1459 VETTRAIRDTLGLDIPIIALTAHAMEGDRKRFLDAGMQGYVAKPFD----LPELQD 1510
>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 1052
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 26/160 (16%)
Query: 4 GEGESSSKKAKIMENPSAK-----NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENG 58
G+ +S ++ +IM S + ++R+ L+ +D+ + + + LK G++VEVA NG
Sbjct: 886 GDQRNSVEQGEIMTQYSVREEMKRSVRI--LLAEDNPVNQKLAKIMLKKAGYQVEVANNG 943
Query: 59 KEAVD-LFRSGAKFDIVFIDKEMPVMNGIEATREIR------------------SMGIKI 99
+EA++ L S F ++F+D +MP M+G ATREIR S +I
Sbjct: 944 REAIEILMASRNGFHLIFMDVQMPEMDGFTATREIRRLESEHVLKPPQCTDFHASTIARI 1003
Query: 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
I+ +T+ + +REA + AG+D TKP+ + + ++E
Sbjct: 1004 PIIAMTAHAMKGDREACIDAGMDDYITKPIKREGVFSIVE 1043
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
LG+ E+ + + + S K AL+VDD+ I + LK +G ++ + G + +
Sbjct: 732 LGKSETKAARPYTPVSLSGKK----ALLVDDNDTNLKILAAYLKPVGIRLVLLNKGVDVL 787
Query: 63 DLFRSGA----KFDIVFIDKEMPVMNGIEATREIR-------SMGIKIKIVGVTSLNSEA 111
L S FDI D +MP+M+G E R+IR + I+ + + +L+S
Sbjct: 788 PLLESAIGEQDPFDICITDIQMPIMSGYEVARQIRLFESPVSGLQTSIRSLPLMALSSVR 847
Query: 112 EREA--FMQAGLDLCHTKPLSVDKILPLMEDLM 142
++A + G D KP+ +++ ++E ++
Sbjct: 848 GQDAKRCREVGFDGFLGKPIRRERLYRMLERIL 880
>gi|229529485|ref|ZP_04418875.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)]
gi|229333259|gb|EEN98745.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)]
Length = 572
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
+S+S KI+ + KN + LVV+D + + + L LG+ V +AENG +AV+L
Sbjct: 440 QSTSSSQKIV---NVKNHHI--LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE 494
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FD+V +D MP+M+GI AT+ +R I+I I+ +T+ + ++++ + AG++
Sbjct: 495 KNHVFDLVLMDISMPIMDGIAATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVL 554
Query: 127 KPLSVDKILPLMEDLM 142
KP+ I+ +++ +
Sbjct: 555 KPIRSKDIMEVVKRFL 570
>gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
Length = 950
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
++ L VDD+ + + L+ L KV+ AE+G +AV L ++ +D + +D +MP M+G
Sbjct: 692 IYVLAVDDNPANLRLVTTLLQDLNIKVDAAESGMQAVSLSKNKV-YDAILMDIQMPEMDG 750
Query: 86 IEATREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+EATR IR+ + I+ +T+ +ERE ++AG+D TKP+S ++ L+
Sbjct: 751 LEATRTIRANRTNLNTPIIALTAHAMASEREQLLEAGMDDYMTKPVSEQALINLL 805
>gi|423115341|ref|ZP_17103032.1| sensor protein rcsC [Klebsiella oxytoca 10-5245]
gi|376381427|gb|EHS94164.1| sensor protein rcsC [Klebsiella oxytoca 10-5245]
Length = 948
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + + L SLG++ A +G +A+++ S DIV D MP
Sbjct: 822 NDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDVNMPN 880
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 881 MDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|390950873|ref|YP_006414632.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390427442|gb|AFL74507.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1091
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 3 LGEGESSSKKAKIMENP----SAKNLRLFA-------LVVDDDCFIRTIHSMALKSLGFK 51
LG+G + +A + +P SA + RL A L+ +D+ + + L+ LGF
Sbjct: 715 LGKGAEPAGRAGMSGDPETADSAPDRRLMARSAGLRLLLAEDNPINQEVALSQLQELGFA 774
Query: 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK--IKIVGVTSLNS 109
V++A NG EAV+L R A + ++ +D +MP MNG+EATR IR + + I+ +T+
Sbjct: 775 VDLASNGAEAVELARRNA-YALILMDVQMPTMNGLEATRAIRRLPGRAVTPILAMTAGAF 833
Query: 110 EAEREAFMQAGLDLCHTKPLSVD 132
+ +RE + AG+D KP+ D
Sbjct: 834 QEDREECLAAGMDDHLAKPVDPD 856
>gi|419914472|ref|ZP_14432870.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Escherichia coli KD1]
gi|388386743|gb|EIL48383.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Escherichia coli KD1]
Length = 909
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 780 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 838
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 839 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 892
>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
AmH]
gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
AmH]
Length = 1030
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 13 AKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAK 70
AK E P K++ L AL+ +D+ + + LKSLG + ++A NG EA + + + K
Sbjct: 755 AKAEEKPQHKDIYSLKALIAEDNPINQKLLQTTLKSLGIESDLANNGLEAFNKYTINPDK 814
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCH 125
+D++F+D +MPVM+G+EAT+EI I+ VT+ + +RE F+ +G+D
Sbjct: 815 YDVIFMDVQMPVMDGLEATQEILEFEQEEEIPHTPIIAVTANVLKGDRERFLGSGMDEYI 874
Query: 126 TKPLSVDKILPLME 139
+KP+ D +L ++E
Sbjct: 875 SKPIEKDALLKILE 888
>gi|424922532|ref|ZP_18345893.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
gi|404303692|gb|EJZ57654.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
Length = 937
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
+ LRL LV +D+ + I L+ LG V +A +G+EA+ L+R G++FDIV D MP
Sbjct: 811 RPLRLHILVAEDNAINQLILRDQLEELGCTVALASDGEEALSLWR-GSEFDIVLTDVNMP 869
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+NG E T +R G I+G T+ E + AG++ C KP +
Sbjct: 870 RLNGYELTAALRRAGCVTPIIGATANALRGEDALCLAAGMNHCLVKPFT 918
>gi|415840597|ref|ZP_11522025.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
gi|417282034|ref|ZP_12069334.1| sensor kinase protein RcsC [Escherichia coli 3003]
gi|425278517|ref|ZP_18669763.1| sensor protein RcsC [Escherichia coli ARS4.2123]
gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
gi|386246363|gb|EII88093.1| sensor kinase protein RcsC [Escherichia coli 3003]
gi|408201930|gb|EKI27064.1| sensor protein RcsC [Escherichia coli ARS4.2123]
Length = 949
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
Length = 881
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + I S L+ GF + NG+EA+D G KFD V +D MPVM+GI A
Sbjct: 761 LIAEDNLMNQKIASFFLEKAGFDYLITSNGQEALDAITQGGKFDAVLMDCMMPVMDGITA 820
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
TREIR K I+ +T+ E + ++ +AG+D KP +++ L +L
Sbjct: 821 TREIRRWETEQGSGKTPIIALTASVLEEDIQSCFEAGMDAYLPKPYKSNQLYDLFSEL 878
>gi|300123509|emb|CBK24781.2| unnamed protein product [Blastocystis hominis]
Length = 240
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 30 VVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
VVDD IR + LK LG+ + +NG+E +D G FD+V +D EMP MNG E T
Sbjct: 138 VVDDQLSIRQLVKSCLKRLGYTCTLFKNGEEFLDSVHEGNTFDLVLLDYEMPGMNGGEVT 197
Query: 90 REIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD 122
+ +R +IVG+T +R+A+++ G D
Sbjct: 198 KILRQEQYSGRIVGLTGNTMSEQRDAYIRCGTD 230
>gi|411010658|ref|ZP_11386987.1| hybrid sensory histidine kinase BarA [Aeromonas aquariorum AAK1]
Length = 903
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 10 SKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
+ ++ + PS ++++ + L VDD+ + + LK + +V V +NGKEAV L +S
Sbjct: 648 AARSTPLPEPSPRSVQEIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVRLAQS- 706
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIK--IVGVTSLNSEAEREAFMQAGLDLCHT 126
FDI+F+D +MP+M+GI AT+ IRS + + IV VT+ ERE ++ G+D
Sbjct: 707 QPFDIIFMDIQMPIMDGISATQAIRSQSLNTETPIVAVTAHAIPGERERLIRQGMDDYLA 766
Query: 127 KPLSVDKILPLMEDL 141
KP+ + L+ D
Sbjct: 767 KPIDEAMLAKLITDF 781
>gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
gi|385791053|ref|YP_005822176.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 1211
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF---RSGAKFDIVFIDKEMPVMNG 85
L+V+D+ R I L +GF V+ AE+G+ A+++ + GA +D++ +D +MPVM+G
Sbjct: 1091 LLVEDNELNREIAQSVLGEMGFGVDCAEDGRVALNVLEKAKPGA-YDLILMDMQMPVMDG 1149
Query: 86 IEATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+EATR IR+M K+ IV +T+ E +R+A + AG++ KP+ V+K+ ++
Sbjct: 1150 LEATRRIRAMRDDYFKKVPIVAMTANAFEEDRKAALDAGMNEHVAKPIDVEKLKKVLRKF 1209
Query: 142 M 142
+
Sbjct: 1210 L 1210
>gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472]
gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
12472]
Length = 664
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 70/110 (63%), Gaps = 5/110 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + L++LG +VE+A NG+EA+ L +G FD+ +D EMPVM+G +A
Sbjct: 412 LLVEDNLVNQELATAMLRNLGCEVELARNGEEALRLCEAGG-FDLALMDCEMPVMDGWQA 470
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
T IR+ G ++ IV +T+ ERE +QAG+D +KP + +++
Sbjct: 471 TGAIRARERPGGARLTIVALTANAGLGERERCLQAGMDDYLSKPFTQNEL 520
>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 863
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P + + LVV+D+ + + LK LG++ +VA++G++A+D+ + FDI+ +D
Sbjct: 602 PRSSQRVVRVLVVEDNLMNQKLVLQVLKHLGYQGQVADDGRKAIDILQKDT-FDIILMDL 660
Query: 79 EMPVMNGIEATREIRS-MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MPVM+G E TR IRS + + I+ +T+ +E+E ++AG++ +KP ++++ L
Sbjct: 661 QMPVMDGYETTRYIRSKINTTVPIIAMTAHALPSEKEECLKAGMNDFLSKPFQIEELQLL 720
Query: 138 MEDLM 142
+ +
Sbjct: 721 IRPFL 725
>gi|46117570|ref|XP_384803.1| hypothetical protein FG04627.1 [Gibberella zeae PH-1]
Length = 1153
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 10/136 (7%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-A 69
+K+ + NP + L+VDD+ + M +K L + A NG+EAV ++ A
Sbjct: 1016 EKSNPIYNPESTEKTF--LLVDDNSINLKMLVMFMKKLKLQYSTASNGQEAVTKYKENPA 1073
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGI-----KIKIVGVTSLNS-EAEREAFMQAGLDL 123
+ VF+D MPVMNG EATR IR+ K I +T L S +A++EA + +G+DL
Sbjct: 1074 SYKCVFMDISMPVMNGFEATRHIRTFEAECAIPKCSIFAITGLASRDAQQEAVL-SGIDL 1132
Query: 124 CHTKPLSVDKILPLME 139
TKP+++ ++ L+E
Sbjct: 1133 FLTKPIALAEMKHLLE 1148
>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
Length = 1259
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ R + L+S GF+V +AENG++AV+ +SG +FD+V +D EMP M+G A
Sbjct: 990 LVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVEKIQSG-QFDLVLMDCEMPEMDGFAA 1048
Query: 89 TREIRSMG-------IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
TR IR++ + IV +T+ ++E + AG++ KP++ +++ + D
Sbjct: 1049 TRMIRNLAENGHPELANLPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVDC 1108
Query: 142 M 142
+
Sbjct: 1109 L 1109
>gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016]
gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
Length = 881
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + I S L+ GF + NG+EA+D G KFD V +D MPVM+GI A
Sbjct: 761 LIAEDNLMNQKIASFFLEKAGFDYLITSNGQEALDAITQGGKFDAVLMDCMMPVMDGITA 820
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
TREIR K I+ +T+ E + ++ +AG+D KP +++ L +L
Sbjct: 821 TREIRRWETEQGSGKTPIIALTASVLEEDIQSCFEAGMDAYLPKPYKSNQLYDLFSEL 878
>gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 891
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA--KFDIVFIDKEMPVMNGI 86
L+ +D+ R I L+ G +VE A +G+EAV LFR A + V +D MPVMNG+
Sbjct: 772 LLAEDNELNREIAKTLLEMYGMEVEAARDGQEAVALFRDNAPDHYQAVLMDIRMPVMNGM 831
Query: 87 EATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
EATR IR + +I I+ +T+ E +R A M+AG+ KPL + +L
Sbjct: 832 EATRSIRGLERGDAGQIPILAMTANAFEEDRMAAMEAGMTGYLVKPLDIKVVL 884
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRSGAKFDIVFIDKEMP 81
L LV DDD + + LK G ++G +AV+ R G +DI ID +MP
Sbjct: 630 LAVLVADDDPVVGCQCTEILKDAGANSVWVDSGFKAVEEVERQLRHGRYYDIALIDWQMP 689
Query: 82 VMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
M+G+E R IR + G I+ +++ + E +AG+D KPL
Sbjct: 690 DMDGVETARRIRRLVGPDTTIIMISAYDWSFIEEDARKAGVDCFVPKPL 738
>gi|398337752|ref|ZP_10522457.1| GAF sensor hybrid histidine kinase [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 1667
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 12/139 (8%)
Query: 8 SSSKKAKIME----NPSAKNLRLFALVVDDDCFIRTIHSMA--LKSLGFKVEVAENGKEA 61
SSS++ I++ +P K ++ L+VDDD +R I ++ L+ KV AEN E
Sbjct: 1527 SSSQRKMILDSSHNDPILKGHKV--LIVDDD--VRNIFALTSVLERQKMKVAFAENASEG 1582
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQA 119
+ + ++ +IV +D MP M+G EATR IRSM + + IV VT+ + +RE ++A
Sbjct: 1583 IRILQNTPDIEIVIMDVMMPDMDGYEATRAIRSMDQFVSLPIVAVTAKAMKGDREKCIEA 1642
Query: 120 GLDLCHTKPLSVDKILPLM 138
G TKP+ VD++L L+
Sbjct: 1643 GATDYITKPVDVDQLLSLL 1661
>gi|423109406|ref|ZP_17097101.1| sensor protein rcsC [Klebsiella oxytoca 10-5243]
gi|376382140|gb|EHS94874.1| sensor protein rcsC [Klebsiella oxytoca 10-5243]
Length = 948
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + + L SLG++ A +G +A+++ S DIV D MP
Sbjct: 822 NDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGIDALNVL-SKQHIDIVLSDVNMPN 880
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 881 MDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDII 932
>gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1]
gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1]
Length = 994
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L +VVDD+ + + L+SLG V E+G+ A+ L S ++D+VF+D +MPVM+G
Sbjct: 695 LSVIVVDDNQANLKLLTTLLESLGITVSPCESGERALTLMNS-IRYDLVFMDIQMPVMDG 753
Query: 86 IEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
IE T IR + G + I+ VT+ +E+ + +GLD TKP+S +IL +++
Sbjct: 754 IETTHRIRQIEDAGRHVPIIAVTAHALASEKRHLLDSGLDDYVTKPISEAQILHIIK 810
>gi|123401570|ref|XP_001301889.1| ATPase [Trichomonas vaginalis G3]
gi|121883123|gb|EAX88959.1| ATPase, putative [Trichomonas vaginalis G3]
Length = 1378
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--FDIVFIDKEMPVMNGI 86
LVV+D+ + + L+ LG E+A+NG+ A+D+ + FD+VF+D +MPV++G+
Sbjct: 1260 LVVEDNKQNQFVMKKILEKLGCSFEMADNGQIAIDILNANIDNPFDLVFMDCQMPVLDGL 1319
Query: 87 EATREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
ATR+IR+ G + I+ +T+ E +RE+ + AG+D +KP+ + +I
Sbjct: 1320 SATRKIRASGKPYANMHIIALTANAIEGDRESCLAAGMDDYLSKPVRIQQI 1370
>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 993
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + S ++++ P + LVVDD R + + LK G V AENG+EA+D+
Sbjct: 566 EKSAGSVSSELLRLPGKR-----VLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDM 620
Query: 65 F----RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
SG +++V +D +MPV++G ATR +R ++ +T +RE M AG
Sbjct: 621 IAEGNESGYPYELVLMDMQMPVLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAG 680
Query: 121 LDLCHTKPLSVDKILPLMEDLM 142
D TKP+++D++L ++ +
Sbjct: 681 CDDFLTKPVNLDELLEMVSQYL 702
>gi|423199766|ref|ZP_17186348.1| hypothetical protein HMPREF1171_04380 [Aeromonas hydrophila SSU]
gi|404628844|gb|EKB25615.1| hypothetical protein HMPREF1171_04380 [Aeromonas hydrophila SSU]
Length = 903
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 16 MENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ PS ++++ + L VDD+ + + LK + +V V +NGKEAV L +S FDI+
Sbjct: 654 LPEPSPRSVQEIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVRLAQS-QPFDII 712
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIK--IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
F+D +MP+M+GI AT+ IRS + + IV VT+ ERE ++ G+D KP+
Sbjct: 713 FMDIQMPIMDGISATQAIRSQSLNTETPIVAVTAHAIPGERERLIRQGMDDYLAKPIDEA 772
Query: 133 KILPLMEDL 141
+ L+ D
Sbjct: 773 MLAKLITDF 781
>gi|386003986|ref|YP_005922265.1| persistence regulator MRPA [Mycobacterium tuberculosis RGTB423]
gi|380724474|gb|AFE12269.1| persistence regulator MRPA [Mycobacterium tuberculosis RGTB423]
Length = 228
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|333985083|ref|YP_004514293.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333809124|gb|AEG01794.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1266
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 9 SSKKAKIMENPSAKNL-RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
++K A I P K L R LVVDD R + L+S G V++A +G++AV +
Sbjct: 912 TAKTAGIATGPDEKRLHRARILVVDDSEINREMARRILESEGAIVQLANDGQDAVSWLEA 971
Query: 68 GA-KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDL 123
A + D+V +D +MP+M+G EATR+IR +K+ ++ + +L + A ++ A ++AG++
Sbjct: 972 NAERIDVVLMDIQMPLMDGYEATRQIRET-LKLTLLPIVALTAGAFKNQQTAALEAGMNG 1030
Query: 124 CHTKPLSVDKILPLMEDLM 142
KP VD ++ L+ +
Sbjct: 1031 FIAKPFDVDDLVSLLRQYL 1049
>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
Length = 850
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P R LVV+D + + M L+ LG +V +A NG+ VD+++ FDI+F+D
Sbjct: 709 PETSTPRAKVLVVEDTVVNQKVAKMMLEKLGVEVMIASNGQIGVDMYQEH-DFDIIFMDC 767
Query: 79 EMPVMNGIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+MPV++G EAT+ IR++ I I+ +T+ + E++ +AG+D +KP+S +
Sbjct: 768 QMPVLDGFEATKAIRNLEQNTSHIPIIALTANVVKEEKDKCYEAGMDDFVSKPVSKKVLS 827
Query: 136 PLME 139
+ME
Sbjct: 828 AVME 831
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG----AKFDIVFIDKEMPVM 83
L+VDD I S L + G K ++ +A+D+ + + FD+V IDK MP +
Sbjct: 493 VLLVDDSMLNMRITSAQLNNFGAKTICCDDATQAIDIVKQAIVNKSPFDLVIIDKIMPHL 552
Query: 84 NGIE 87
+G E
Sbjct: 553 DGFE 556
>gi|365891333|ref|ZP_09429766.1| putative Histidine kinase [Bradyrhizobium sp. STM 3809]
gi|365332747|emb|CCE02297.1| putative Histidine kinase [Bradyrhizobium sp. STM 3809]
Length = 760
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+ RL LVVDD IRT+ + L G + +VA NG+EA+D + G ++DIV +D +M
Sbjct: 629 ARTDRLTILVVDDTPIIRTLITKLLARFGCQFDVACNGREAIDAVQ-GKRYDIVLMDMQM 687
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPL 129
P M+G+ AT IR + V + +L + A +RE + AG++ TKP+
Sbjct: 688 PEMDGMTATAAIRGLDGPASDVPIIALTANALVGQREICIGAGMNDFLTKPI 739
>gi|408672306|ref|YP_006872054.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
gi|387853930|gb|AFK02027.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
Length = 1101
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
S S +A+I N L+VDD+ R + S L G +V A++G +A+++F
Sbjct: 822 SESSEAEIQLTNFFSNHTPKILLVDDNQVNRKVASEILIKAGCEVLTADSGAKAIEVFGE 881
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
G FD++F+D +MP M+GIE T+ +R + KIV +T+ + + +RE F+ G+D
Sbjct: 882 GHGFDVIFMDIQMPEMDGIETTKRLRQLYGNALPKIVAMTAYSMQHDRERFLSEGMDDYV 941
Query: 126 TKPLSVDKILPLMEDLMKN 144
KP+ ++ + +++ N
Sbjct: 942 PKPIRASILIQKVNEIVPN 960
>gi|433630086|ref|YP_007263714.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140070010]
gi|432161679|emb|CCK59024.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140070010]
Length = 230
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
[Mycobacterium bovis AF2122/97]
gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224989380|ref|YP_002644067.1| persistence regulator MprA [Mycobacterium bovis BCG str. Tokyo 172]
gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T46]
gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis CPHL_A]
gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T17]
gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis K85]
gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis K85]
gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T92]
gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis EAS054]
gi|339631044|ref|YP_004722686.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|340625993|ref|YP_004744445.1| persistence regulator MRPA [Mycobacterium canettii CIPT 140010059]
gi|378770742|ref|YP_005170475.1| Response regulator [Mycobacterium bovis BCG str. Mexico]
gi|433626073|ref|YP_007259702.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140060008]
gi|433634039|ref|YP_007267666.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140070017]
gi|433641111|ref|YP_007286870.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140070008]
gi|449063026|ref|YP_007430109.1| two component response transcriptional regulatory protein MprA
[Mycobacterium bovis BCG str. Korea 1168P]
gi|81712139|sp|Q7U0X4.1|MPRA_MYCBO RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012448|sp|A1KHB7.1|MPRA_MYCBP RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
AF2122/97]
gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T46]
gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis CPHL_A]
gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis K85]
gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis K85]
gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T17]
gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T92]
gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis EAS054]
gi|339330400|emb|CCC26063.1| mycobacterial persistence regulator MRPA (two component response
transcriptional regulatory protein) [Mycobacterium
africanum GM041182]
gi|340004183|emb|CCC43323.1| mycobacterial persistence regulator MRPA (two component response
transcriptional regulatory protein) [Mycobacterium
canettii CIPT 140010059]
gi|341600924|emb|CCC63595.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
str. Moreau RDJ]
gi|356593063|gb|AET18292.1| Response regulator [Mycobacterium bovis BCG str. Mexico]
gi|432153679|emb|CCK50902.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140060008]
gi|432157659|emb|CCK54937.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140070008]
gi|432165632|emb|CCK63110.1| DNA-binding response regulator in two-component regulatory system
[Mycobacterium canettii CIPT 140070017]
gi|449031534|gb|AGE66961.1| two component response transcriptional regulatory protein MprA
[Mycobacterium bovis BCG str. Korea 1168P]
Length = 230
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|326424287|ref|NP_762701.2| chemotaxis protein CheY [Vibrio vulnificus CMCP6]
gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
Length = 881
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + I S L+ GF + NG+EA+D G KFD V +D MPVM+GI A
Sbjct: 761 LIAEDNLMNQKIASFFLEKAGFDYLITSNGQEALDAITQGGKFDAVLMDCMMPVMDGITA 820
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
TREIR K I+ +T+ E + ++ +AG+D KP +++ L +L
Sbjct: 821 TREIRRWETEQGSGKTPIIALTASVLEEDIQSCFEAGMDAYLPKPYKSNQLYDLFSEL 878
>gi|123475708|ref|XP_001321030.1| ATPase [Trichomonas vaginalis G3]
gi|121903848|gb|EAY08807.1| ATPase, putative [Trichomonas vaginalis G3]
Length = 1419
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + + L++L ++A+NG EA+ + +FDIVF+D +MPV++G+EA
Sbjct: 1302 LVVEDNKANQFVMKKILQNLQCSFKIADNGSEALTALDND-EFDIVFMDCQMPVLDGLEA 1360
Query: 89 TREIRSMGIK---IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR IRS G + + IV +T+ E + + M AG+D KP+ + +I L++
Sbjct: 1361 TRRIRSSGKEYRNVPIVALTASAVEGDEQVCMDAGMDAYLAKPVRMQQISALIK 1414
>gi|407684961|ref|YP_006800135.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'English Channel 673']
gi|407246572|gb|AFT75758.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'English Channel 673']
Length = 890
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E A +L L+V+D+ + + L +LG ++AE+GK+AV + ++D++ +
Sbjct: 760 EEAEATSLEGHVLLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQKVENAPQYDLILM 819
Query: 77 DKEMPVMNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
D +MPVM+G EAT+++R G + I+G+++ + ++++ + AG++ TKP+ ++
Sbjct: 820 DVQMPVMDGYEATKQLREKGFTGVPIIGLSANAMKEDKQSAIDAGMNDYLTKPIKQKSLI 879
Query: 136 PLMEDLM 142
+++ +
Sbjct: 880 GMLKQYL 886
>gi|258516849|ref|YP_003193071.1| response regulator receiver protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780554|gb|ACV64448.1| response regulator receiver protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 135
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVVDD +R + ++ ++ G KV A+NGKEAVD+ S ++V +D MPVM G
Sbjct: 5 LKVLVVDDQPGVRYLLNIIIEEEGHKVYTAQNGKEAVDMI-SLVHPELVLMDVRMPVMGG 63
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+EA + I+ + ++V +T+ +E EA MQ G C KP +++I ++ + N
Sbjct: 64 LEALKIIKKISPDTEVVMMTAYGAEDTVEAAMQNGALTCIAKPFDIEEIKNFLKQYVWN 122
>gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN, partial [Cronobacter turicensis z3032]
gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032]
Length = 703
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+ +N + LVVDD R + + L +LG++ A +G +A+++ S DIV D
Sbjct: 574 AEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL-SKNHIDIVLSDVN 632
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+++D
Sbjct: 633 MPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 685
>gi|153801730|ref|ZP_01956316.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
gi|124122754|gb|EAY41497.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
Length = 514
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 399 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 458
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 459 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 512
>gi|147674610|ref|YP_001217001.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|227117911|ref|YP_002819807.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|146316493|gb|ABQ21032.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|227013361|gb|ACP09571.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
Length = 514
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 399 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 458
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 459 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 512
>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
[Sulfurimonas gotlandica GD1]
gi|373868924|ref|ZP_09605322.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
[Sulfurimonas gotlandica GD1]
gi|372471025|gb|EHP31229.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 798
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
AL+V+D+ + + S+ L+ G +VA +G EAVD ++ K+D++ +D+ MP MNGIE
Sbjct: 678 ALIVEDNKTNQMLLSILLEDFGLTYDVANDGLEAVDKVKNN-KYDLILMDENMPNMNGIE 736
Query: 88 ATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
A+ IR + I I+ VT+ + +RE F++ G+D +KP+ D++
Sbjct: 737 ASSTIRKLEHTKDIVIIAVTANALKGDREKFLENGMDDYISKPIDTDEL 785
>gi|375107478|ref|ZP_09753739.1| PAS domain S-box [Burkholderiales bacterium JOSHI_001]
gi|374668209|gb|EHR72994.1| PAS domain S-box [Burkholderiales bacterium JOSHI_001]
Length = 1192
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
A+ L L LVV+D + + L LG+ +VA NG+EA++L R +D+VF+D +M
Sbjct: 941 ARRLPLRILVVEDSAINQKLAVGILAKLGYPSDVAGNGREALELMRH-QPYDLVFMDLQM 999
Query: 81 PVMNGIEATREI---RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
P M+G+EATR+I +S ++ +IV +T+ +RE + AG+D KP+
Sbjct: 1000 PEMDGLEATRQIVAEQSALVRPRIVAMTANALAGDRERCLAAGMDDYIAKPI 1051
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ I + G +V A +G A+ + FD+ +D MP M+G++
Sbjct: 806 LLVDDNPTNLHILHTQCRRWGMQVTTAIDGPNALAVLDGDRGFDVAVLDLHMPGMDGVQL 865
Query: 89 TREIRSM--GIKIKIVGVTS---LNSEAEREAFMQAGLDLCHTKPL 129
+IR + G++ +V ++S S ER+ A C KP+
Sbjct: 866 AHQIRWLCPGLQPALVLLSSSAQRRSGVERDDLFAA----CLAKPV 907
>gi|291087446|ref|ZP_06346485.2| sensory box histidine kinase/response regulator [Clostridium sp.
M62/1]
gi|291075004|gb|EFE12368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Clostridium sp. M62/1]
Length = 861
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + K+ + +E R+ L+ +D+ I + LK G V A NGKEAV+L
Sbjct: 699 EKKPEEKREQPLETADLSGYRV--LLAEDNEINMEISTELLKMYGLDVTQAWNGKEAVEL 756
Query: 65 FRSGAK--FDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQ 118
FR + FDI+ +D +MPVMNG EA R+IR+M I I+ VT+ + A
Sbjct: 757 FREMGEGFFDIILMDMQMPVMNGCEAARQIRAMKRPDAATIPIIAVTANAFSEDIAATRN 816
Query: 119 AGLDLCHTKPLSVDKILPLMEDLMKN 144
AG++ +KP+ + +E L+K+
Sbjct: 817 AGMNAHISKPIDFEIFRKTVESLLKD 842
>gi|51892678|ref|YP_075369.1| two-component response regulator involved in modulation of
flagellar, CheY [Symbiobacterium thermophilum IAM 14863]
gi|51856367|dbj|BAD40525.1| two-component response regulator involved in modulation of
flagellar, CheY [Symbiobacterium thermophilum IAM 14863]
Length = 119
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD F+R + L GF+V AENG+EA+ +++S + D+V +D MPVM+GI A
Sbjct: 5 LLVDDAAFMRMRCAKLLTEHGFEVAEAENGQEAIAMYQS-YRPDLVLMDITMPVMDGITA 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TREI+++ K+V V++L + ++AG KP +KIL
Sbjct: 64 TREIKNLDPDAKVVMVSALGQQTMVIEAIKAGAKDFVVKPFEPEKIL 110
>gi|344342730|ref|ZP_08773601.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
gi|343806066|gb|EGV23961.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
Length = 1357
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVF 75
+ P + +RL LVVDD R + L+ G +V A NG+EAVD + D+V
Sbjct: 1012 QGPRLQEVRL--LVVDDSEINREVARTILEGEGAEVREAANGREAVDWVEQHPQGVDLVL 1069
Query: 76 IDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+D +MPVM+G ATREIR ++ ++ +T+ + +REA + AG+D KP VD+
Sbjct: 1070 MDIQMPVMDGYMATREIRERLALPQLPVIALTAGAFQPQREAALAAGMDDFLPKPFDVDQ 1129
Query: 134 IL 135
++
Sbjct: 1130 MI 1131
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIVFIDKEM 80
R LVVDD+ R ++LG+ + A +G+EA+ L + FD++ ID M
Sbjct: 874 RCNVLVVDDNEAARATLKACARTLGWDSKTASSGEEALSLLLKRQPGSSPFDVLLIDWRM 933
Query: 81 PVMNGIEATREIR 93
P M+GIE R R
Sbjct: 934 PGMDGIETIRMAR 946
>gi|307107694|gb|EFN55936.1| hypothetical protein CHLNCDRAFT_145218 [Chlorella variabilis]
Length = 1025
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 20 SAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIV 74
SA++L+ L L+ +D+ +T+ L SLG + VA NG+EAV G +FDI+
Sbjct: 891 SARSLQGLRVLLAEDNLINQTVAKRVLTSLGCECRVASNGREAVMAVEEAAAGGRQFDII 950
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+D MPV+ G+EAT+EIR +G + IV +T+ SE +R + AG+D +KP+
Sbjct: 951 LMDMCMPVLGGVEATQEIRQLGSCVPIVAMTANASERDRVECIAAGMDGFLSKPV 1005
>gi|423758172|ref|ZP_17712372.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein, partial [Vibrio cholerae HC-50A2]
gi|408637584|gb|EKL09623.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein, partial [Vibrio cholerae HC-50A2]
Length = 152
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 62/101 (61%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 37 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 96
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T+ +R I+I I+ +T+ + ++++ + AG++ KP+
Sbjct: 97 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPI 137
>gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
Length = 690
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-SGAKFDIVFIDKEMPVMNGIE 87
LV +D + + + L+ G V VA NGKEA+DLF S +FD++ +D MPV+ GI+
Sbjct: 575 LVAEDSKANQMVVKLMLEKAGHYVVVANNGKEAIDLFHGSHVQFDVILMDMSMPVLCGID 634
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
AT+++R G ++ I+ +T+ +++ + AG+D TKP+
Sbjct: 635 ATKQLREEGYQLPIIALTANAMSEDKKRCLDAGMDDFVTKPI 676
>gi|406597948|ref|YP_006749078.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii ATCC 27126]
gi|406375269|gb|AFS38524.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii ATCC 27126]
Length = 890
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E A +L L+V+D+ + + L +LG ++AE+GK+AV + ++D++ +
Sbjct: 760 EEAEATSLEGHVLLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQKVENAPQYDLILM 819
Query: 77 DKEMPVMNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
D +MPVM+G EAT+++R G + I+G+++ + ++++ + AG++ TKP+ ++
Sbjct: 820 DVQMPVMDGYEATKQLREKGFTGVPIIGLSANAMKEDKQSAIDAGMNDYLTKPIKQKSLI 879
Query: 136 PLMEDLM 142
+++ +
Sbjct: 880 GMLKQYL 886
>gi|427724850|ref|YP_007072127.1| histidine kinase [Leptolyngbya sp. PCC 7376]
gi|427356570|gb|AFY39293.1| histidine kinase [Leptolyngbya sp. PCC 7376]
Length = 737
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + I L LGF+ ++AENG EA+ A +D+V +D MP M+GI A
Sbjct: 599 LVVEDVKLNQIIICSMLTKLGFEADLAENGLEAIAALNKRA-YDVVLMDWHMPKMDGITA 657
Query: 89 TREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
T++IR + + I+ VT+ S +R+ + AG+D +KPL+++++ P++E
Sbjct: 658 TKKIRELQDIVPQPWIIAVTASASPEDRQTCLDAGMDDYLSKPLTLEQLTPVIE 711
>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1523
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 15/146 (10%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
+LG G S+ A P + LR+ L+ +D+ + + L+SLG+ +V NG+E
Sbjct: 1229 LLGMGPPLSQSAPSASRPQ-QPLRI--LLAEDNPVNQKVALRQLQSLGYMADVVANGQEV 1285
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFM 117
+DL + ++D++ +D +MPVM+G EATR +R G + ++ +T+ + +RE +
Sbjct: 1286 LDLLQR-VQYDLILMDCQMPVMDGYEATRRLRQQERGSGHRTVVIAITANAMQEDRERCL 1344
Query: 118 QAGLDLCHTKPLSVDKILPLMEDLMK 143
QAG+D +KP+ L EDL +
Sbjct: 1345 QAGMDDYLSKPV-------LKEDLER 1363
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S + A+I + K L LVVDD+ R I + G VE AEN +A+D R
Sbjct: 1084 SQQPARIPVDLQGKRL----LVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQA 1139
Query: 69 AK----FDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLD 122
A+ F + +D +MP ++G R I++ + ++V +TSL + G
Sbjct: 1140 AREGIPFPLAVLDMQMPEVDGETLGRWIKADPELSQTQLVMMTSLGLGEHSRRAAEIGFA 1199
Query: 123 LCHTKPLSVDKI 134
TKP+ ++
Sbjct: 1200 AYLTKPVKQTRL 1211
>gi|302686342|ref|XP_003032851.1| histidine kinase [Schizophyllum commune H4-8]
gi|300106545|gb|EFI97948.1| histidine kinase [Schizophyllum commune H4-8]
Length = 1050
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA--KFDIVFIDKEMPVMNGI 86
LVVDD+ I + L+S+G KV A +G++ +D+ +FD+V +D MPVM G+
Sbjct: 918 LVVDDEPLTGKIMARLLQSMGAKVTTATDGQQCLDILLGPPERRFDLVCLDNSMPVMTGL 977
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
EA ++R G +VG T ++ + AG D+ TKPL+ D+++ L+
Sbjct: 978 EAVGKLRGAGRLDFVVGCTGNALVTDQGEYKDAGADMILTKPLTRDRLMDLV 1029
>gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 953
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 22 KNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF--RSGAKFDIVFID 77
+ +RL A LVVDD IR + ++ G V A NG+EA+D A+ D++ +D
Sbjct: 827 EEIRLSANILVVDDRRDIRYLAQHFIEKAGGTVVTATNGQEAIDTIFAEPKAEIDLIVMD 886
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MPV++G +AT E+R G ++ ++ +T+ +++R+ + AG TKPL K++ +
Sbjct: 887 MQMPVLDGYDATAELRRRGCELPVIALTANAMKSDRDECLAAGCTDYTTKPLDSQKLIAM 946
Query: 138 MEDLMKN 144
++ L+K+
Sbjct: 947 IDRLLKS 953
>gi|383758337|ref|YP_005437322.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381379006|dbj|BAL95823.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 1071
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L AL+V+D+ R + L+ G +V+ A +G+EAV R +DIVF+D +MPVM+G
Sbjct: 816 LQALLVEDNDINREVGVELLREHGLEVDTAHDGREAVHCVRE-RHYDIVFMDMQMPVMDG 874
Query: 86 IEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
++ATR IR + G + IV +T+ A+RE + AG+D KP+
Sbjct: 875 LDATRAIRLLPGGTALPIVAMTANALPADRERCLAAGMDDHVAKPI 920
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL----FRSGAKFDIVFIDKEMPVMN 84
LVVDD R + + L+ GF V+ ++ A+D F + A + + +D +MPV+N
Sbjct: 677 LVVDDHGQARAVTASLLRRQGFSVDSVDSAAAALDAVERAFAAEAPYTLALVDWKMPVVN 736
Query: 85 GIEATREIRS 94
G++ +RS
Sbjct: 737 GLDLALRLRS 746
>gi|410664204|ref|YP_006916575.1| putative hybrid histidine kinase [Simiduia agarivorans SA1 = DSM
21679]
gi|409026561|gb|AFU98845.1| putative hybrid histidine kinase [Simiduia agarivorans SA1 = DSM
21679]
Length = 718
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVM 83
+L L DD+ R++ S + LG +A +G++AV F + +FD+V +D EMPV+
Sbjct: 588 KLHILAADDNAVNRSVVSAMVTKLGHSCVLACDGEDAVTQFLYTNRRFDLVLMDCEMPVL 647
Query: 84 NGIEATREIRSM----GIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+G+ A R IR + G+ ++ +T+ +A+RE +++AG+D TKP+S+D++
Sbjct: 648 DGLGALRCIRELEHERGVTRPTPVIALTANAYQADRERYLEAGMDEVLTKPISLDRL 704
>gi|334138589|ref|ZP_08512005.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
gi|333603872|gb|EGL15270.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
Length = 1038
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
LGE + +++ P+ L LVV+D R + L+ LG+ ++AENG EAV
Sbjct: 891 LGEEQQEWMISRLNSRPAP----LKILVVEDHPVNRQLFIKFLEKLGYGADIAENGMEAV 946
Query: 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM---GIKIKIVGVTSLNSEAEREAFMQA 119
+ S ++D+VF+D +MPVM+G++ATR IR + G I+ VT+ A++E +++
Sbjct: 947 EAVTS-TEYDLVFMDLQMPVMDGLQATRLIRQLLPSGQNPVIIAVTASVRPADKEKCLES 1005
Query: 120 GLDLCHTKPLSVDKI 134
G+ +KP+ D++
Sbjct: 1006 GMQDFISKPILFDEV 1020
>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
gi|291076258|gb|EFE13622.1| response regulator receiver domain protein [Clostridium sp. M62/1]
Length = 889
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--FDIVFIDKEMPVMNGI 86
LVV+D+ R I S G +VE A NGKEAV+ F + FD++ +D +MPVM+G
Sbjct: 764 LVVEDNDLNREIAVTLFSSFGAEVETAVNGKEAVEAFETSEPGFFDLILMDVQMPVMDGY 823
Query: 87 EATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
EATR IRS+ G +I I+ +T+ ++ M G+D +KP+ + +++ +E ++
Sbjct: 824 EATRIIRSLDREDGREIPILAMTANAFSEDKAKSMACGMDGHISKPIDLKEVVEKIERVL 883
Query: 143 K 143
K
Sbjct: 884 K 884
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRSGAKFDIVFIDK 78
+LR+ A+ D DC + K + A + +EAV+ + +G +D+ D
Sbjct: 608 HLRVLAVDDDPDCLTHIKLLLKKLGA--KADTAISCEEAVEKARLAYSAGEDYDVCLADW 665
Query: 79 EMPVMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+MP +G+E R +R + G KI VT+ +++ R AG KPL
Sbjct: 666 KMPSGDGVETIRRLRKLPGRKIAAALVTAYDTDEIRRDAELAGAACVVEKPL 717
>gi|345862573|ref|ZP_08814793.1| sensory box protein [Desulfosporosinus sp. OT]
gi|344324433|gb|EGW35991.1| sensory box protein [Desulfosporosinus sp. OT]
Length = 908
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 18 NPSAKNLRLFALVVDDDCFIR-TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
N S K+L+L L+V+DD IR I +++ G+KV +AE+GK AVD ++ +FD++ +
Sbjct: 781 NCSQKSLKL--LIVEDDEIIRMVIEKFSIRK-GWKVVLAEDGKAAVDAYQK-QEFDVIIM 836
Query: 77 DKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D +MPV++G + T IR + G I+ +T+ + RE + AG+D TKP+
Sbjct: 837 DCQMPVLDGYKTTAAIRQLENKVGKHTPIIAMTANALKGVRETCLNAGMDDYLTKPVETS 896
Query: 133 KILPLMEDLMKN 144
++E KN
Sbjct: 897 AFYDMVEKWAKN 908
>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
[Mycobacterium avium 104]
gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
[Mycobacterium avium subsp. avium ATCC 25291]
gi|417747124|ref|ZP_12395602.1| response regulator with CheY-like receiver domain-containing
protein [Mycobacterium avium subsp. paratuberculosis
S397]
gi|440776505|ref|ZP_20955348.1| two component response transcriptional regulator MprA
[Mycobacterium avium subsp. paratuberculosis S5]
gi|81700688|sp|Q742C1.1|MPRA_MYCPA RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012422|sp|A0QBQ9.1|MPRA_MYCA1 RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
gi|336461410|gb|EGO40281.1| response regulator with CheY-like receiver domain-containing
protein [Mycobacterium avium subsp. paratuberculosis
S397]
gi|436723390|gb|ELP47212.1| two component response transcriptional regulator MprA
[Mycobacterium avium subsp. paratuberculosis S5]
Length = 228
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|336172007|ref|YP_004579145.1| signal transduction histidine kinase with CheB and CheR activity
[Lacinutrix sp. 5H-3-7-4]
gi|334726579|gb|AEH00717.1| signal transduction histidine kinase with CheB and CheR activity
[Lacinutrix sp. 5H-3-7-4]
Length = 1477
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 7 ESSSKKAKIMENPSAKNLRLF---ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
E+++K I +N KN L L+ +DD IR + + LK G V A+NGKEAV+
Sbjct: 1338 EANTKHKSIEKNQKLKNKFLLNKNILIAEDDSLIRLLFKIVLKDTGVNVLFAKNGKEAVE 1397
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123
L++S D+V +D MP M+GIEA I + + KI+ T+ + E+E G
Sbjct: 1398 LYKSTPNIDVVLLDIRMPEMSGIEAMEIILKLNPEAKIIMQTAYAMQDEKEKCYHKGCVD 1457
Query: 124 CHTKPLSVDKIL 135
+KP+ +++
Sbjct: 1458 FLSKPIVKEELF 1469
>gi|423692465|ref|ZP_17666985.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
SS101]
gi|387997659|gb|EIK58988.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
SS101]
Length = 932
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L L LV +D+ + I L+ LG VE+A +G++A+ L +G FD+V D MP +
Sbjct: 808 LNLHLLVAEDNIINQLILRDQLEELGCTVELAADGQQALQLHTAG-NFDVVLTDVNMPHI 866
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
NG E RE+R G + I+G T+ E + + AG++ C KP ++
Sbjct: 867 NGYELARELRRQGCTLPIIGATANAMRGEADLCLAAGMNHCLVKPFAL 914
>gi|387894587|ref|YP_006324884.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
A506]
gi|387162690|gb|AFJ57889.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
A506]
Length = 932
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L L LV +D+ + I L+ LG VE+A +G++A+ L +G FD+V D MP +
Sbjct: 808 LNLHLLVAEDNIINQLILRDQLEELGCTVELAADGQQALQLHTAG-NFDVVLTDVNMPHI 866
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
NG E RE+R G + I+G T+ E + + AG++ C KP ++
Sbjct: 867 NGYELARELRRQGCTLPIIGATANAMRGEADLCLAAGMNHCLVKPFAL 914
>gi|255542874|ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223548461|gb|EEF49952.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 912
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV--------DLFRSGAK----FDIVFI 76
LVV+D +R I + L LG VE NG+EA+ D + G +D +F+
Sbjct: 781 LVVEDAELLRRIVTTTLGKLGANVEACTNGEEALTQVCKALSDQKKEGDSKSIPYDYIFM 840
Query: 77 DKEMPVMNGIEATR----EIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D EMPVMNG EATR E R + I I+ +T+ E + AG+D KPL VD
Sbjct: 841 DCEMPVMNGYEATRLIRIEERKHDVHIPIIALTAHAMPEEASKSIDAGMDFHLNKPLQVD 900
Query: 133 KILPLMEDL 141
K+L +++ +
Sbjct: 901 KLLGVIQSI 909
>gi|374300375|ref|YP_005052014.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 657
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E E + + + +E A+ L L+ +D+ + + + LK G + V ENG+ A++
Sbjct: 509 EAEPVAPEVQAVEAVHAETRSLKVLIAEDNSINQILATEILKEKGHSMFVVENGQAALEA 568
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI---KIKIVGVTSLNSEAEREAFMQAGL 121
R KFD+V +D +MPVM+G EATR IR+ + IV +T+ + +RE F+ AG+
Sbjct: 569 LRK-EKFDLVLMDAKMPVMDGEEATRRIRAGEAGDPDVPIVALTAYALKGDRERFLAAGM 627
Query: 122 DLCHTKPLSVDKILPLMEDL 141
D +KP+ + ++ +++++
Sbjct: 628 DDYISKPIDMQELERVLQEV 647
>gi|296121601|ref|YP_003629379.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
gi|296013941|gb|ADG67180.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
Length = 803
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 83/145 (57%), Gaps = 15/145 (10%)
Query: 7 ESSSKKAKIMENPSAK---------NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAEN 57
ESSS + E+P+ + NLR+ L+ +D + + S+ L+ G +V V EN
Sbjct: 637 ESSSAVSTTSESPAPQSIATTAPLQNLRI--LLAEDGPDNQKLISLILRKAGAEVMVVEN 694
Query: 58 G----KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113
G ++A+D RS + FD++ +D +MPV++G +A+ ++R+ G + IV +T+ ++R
Sbjct: 695 GELAFQQAMDAQRSASGFDVILMDMQMPVLDGYQASAKLRAAGYRAPIVALTAHAMSSDR 754
Query: 114 EAFMQAGLDLCHTKPLSVDKILPLM 138
E + AG TKP++ +++ L+
Sbjct: 755 EKCLAAGCSDYTTKPINKVRLIQLI 779
>gi|375140428|ref|YP_005001077.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium rhodesiae NBB3]
gi|359821049|gb|AEV73862.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium rhodesiae NBB3]
Length = 228
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+++ S + D V +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAQDGLEALEVIASD-RPDAVVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|374300938|ref|YP_005052577.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 946
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 82/136 (60%), Gaps = 8/136 (5%)
Query: 11 KKAKIMENPSAK-NLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
+K ++ P+A+ LR L L+ +D+ R + LK G V ENG++A+++ +
Sbjct: 804 EKPEMAAQPAAEPELRPLKILLAEDNEINRFLALELLKERGHVVTAVENGRDALNML-AK 862
Query: 69 AKFDIVFIDKEMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDL 123
+FD+V +D +MP +NG+EATR IR+ + +I IV +T+ + +RE FM AG+D
Sbjct: 863 ERFDLVLMDVQMPEVNGVEATRRIRAGKVPGTDPRIPIVALTAYALKGDREKFMSAGMDD 922
Query: 124 CHTKPLSVDKILPLME 139
+KP+ ++++ ++E
Sbjct: 923 YLSKPIDMEELDRVLE 938
>gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
Length = 675
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D + + + L+ G ++ +A +G E+++ R A+FD+V +D MP M+G+EA
Sbjct: 425 LLVEDSLTNQMVATAMLEKTGCQITIANDGYESLEKVRQ-AEFDVVLMDVSMPGMDGLEA 483
Query: 89 TREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
TR IR+MG + + I+ +T+ +REA ++AG++ +KPL +++ L++ NN
Sbjct: 484 TRRIRAMGGRYLTLPILAMTAHAFAHDREACLEAGMNDYLSKPLQREQLYSLLKKWALNN 543
>gi|255548469|ref|XP_002515291.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223545771|gb|EEF47275.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1138
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 18/123 (14%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG------------AKFDIVFI 76
LV DDD R + L LG V++ NG+EA++L R G A +D + +
Sbjct: 1009 LVADDDQASRMVAKGNLSKLGASVKLCANGEEALELVRYGLQNQNKNRRYSVAPYDYILM 1068
Query: 77 DKEMPVMNGIEATREI----RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D EMP+MNG EATR+I RS I + ++ +T+ + E+ +AG+D KPL+ D
Sbjct: 1069 DCEMPIMNGYEATRQIRLEERSYDIHMPVIALTADDDNGEK--MEEAGMDDHLHKPLNRD 1126
Query: 133 KIL 135
++L
Sbjct: 1127 QLL 1129
>gi|429213057|ref|ZP_19204222.1| kinase sensor protein [Pseudomonas sp. M1]
gi|428157539|gb|EKX04087.1| kinase sensor protein [Pseudomonas sp. M1]
Length = 937
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 3 LGEGESSSKKAKIMENPS--AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
LG + A + P+ ++L + LV +D+ + I L++LG VE+A +G+E
Sbjct: 793 LGLAQGCVSSAVACQGPAKPVRDLGIRVLVAEDNVINQLILKDQLEALGCVVELASDGQE 852
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
A+ +R +FD V D MP +NG + E+R G + I+G T+ ERE M AG
Sbjct: 853 ALQRWRP-ERFDAVLTDINMPRLNGYQLAAELRRRGCQQPIIGATANAMREERERCMAAG 911
Query: 121 LDLCHTKPLSVDKI 134
+ C KP+ +D +
Sbjct: 912 MSDCLLKPVDLDSL 925
>gi|444350370|ref|YP_007386514.1| Two-component sensor protein RcsC (EC 2.7.3.-) [Enterobacter
aerogenes EA1509E]
gi|443901200|emb|CCG28974.1| Two-component sensor protein RcsC (EC 2.7.3.-) [Enterobacter
aerogenes EA1509E]
Length = 950
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+ N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 818 PTVSNDDMMILVVDDHPINRRLLADQLGSLGYQCMTANDGVDALNVL-SKQHIDIVLSDV 876
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR + + + ++GVT+ E++ +++G+D C +KP+++D
Sbjct: 877 NMPNMDGYRLTQRIRQLEMTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 700
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMP 81
N L L+ +D + + + L+ G KV + NGKEA+++ G KFD+V +D MP
Sbjct: 568 NCSLNILLAEDSNTNQLVAKLMLERRGHKVAITNNGKEAINVLLQGHNKFDLVLMDISMP 627
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
V++G+EAT+++R I I IV +T+ +++++ + + G+D KP+ +++ L+E
Sbjct: 628 VLDGLEATKQLRKREISIPIVALTANAMQSDQKIYHEIGMDGFLAKPICSNELDQLLE 685
>gi|323492426|ref|ZP_08097574.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
gi|323313213|gb|EGA66329.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
Length = 569
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LVVDD + I + LK L ++A NG EA+ +G +DIVF+D MP M+G
Sbjct: 454 LSILVVDDIRMNQVIINQMLKKLSITPDIATNGVEAIKAVSAG-HYDIVFMDCRMPEMDG 512
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
EAT +R K+ I+ +T+ + ERE +Q+G+D TKP + + ++E +
Sbjct: 513 FEATAYLREQQCKLPIIALTAGTTLEEREKCIQSGMDDILTKPYTAKDLKLMLEKWL 569
>gi|456064135|ref|YP_007503105.1| Histidine kinase [beta proteobacterium CB]
gi|455441432|gb|AGG34370.1| Histidine kinase [beta proteobacterium CB]
Length = 809
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
++S + I + P K + A+VV+D R I S+ L++LG V EN A+DL R
Sbjct: 554 TASSRILISKRPGRKKCAIQAVVVEDHPASRQILSLQLEALGITASVCENAATALDLMRD 613
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGIK-IKIVGVTS-LNSEAEREAFMQAGLDLCH 125
FD++ D+ MP M G E ++IRS G + + I+GVT+ + + R F+ +G++
Sbjct: 614 -HHFDLMLTDQSMPGMQGSELAKQIRSQGNRDLIIIGVTADIYALDARHQFLSSGMNGVL 672
Query: 126 TKPLSV 131
KPLS+
Sbjct: 673 IKPLSL 678
>gi|445495732|ref|ZP_21462776.1| putative sensor/response regulatory hybrid protein
[Janthinobacterium sp. HH01]
gi|444791893|gb|ELX13440.1| putative sensor/response regulatory hybrid protein
[Janthinobacterium sp. HH01]
Length = 771
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 31 VDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATR 90
V+D+ + + S L+ G +V+VA NG+E VD SG +D V +D +MPVM+G EATR
Sbjct: 653 VEDNPLNQQVASALLQLEGAQVDVAGNGREGVDRVASGPPYDAVLMDMQMPVMDGNEATR 712
Query: 91 EIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
+R+ G + I+ +T+ EAER+ AG+D +KP+ + ++ ++
Sbjct: 713 LLRAQGHTSLPILALTANVLEAERDECRAAGVDDFISKPIEFEDMVAMV 761
>gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 837
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+ +DD F + L + G V +NG++A++ RS FD+V +D +MPVM+G
Sbjct: 702 LNVLMAEDDHFSGILGVKLLGAFGASVRHVQNGRQALEALRS-EPFDLVLMDVQMPVMDG 760
Query: 86 IEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+EAT IR I I+ +TS + +RE F++AG++ +KP+ + +++ + +
Sbjct: 761 VEATVRIRHGDAGDCARNIPIIAMTSYAMDGDREKFLKAGMNAYVSKPVDIKELMSAISE 820
Query: 141 LM 142
++
Sbjct: 821 ML 822
>gi|452842922|gb|EME44857.1| hypothetical protein DOTSEDRAFT_70797 [Dothistroma septosporum NZE10]
Length = 1239
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 85/142 (59%), Gaps = 11/142 (7%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
GE ++S++ + E P + + L LV D+D ++ + ++ +K L K + A +GKEA D
Sbjct: 1086 GEAGNASEQKRNAEGPHGEQMAL--LVEDNDVNLKLLVAL-MKKLQLKYQCAAHGKEAYD 1142
Query: 64 LFRSGAK-FDIVFIDKEMPVMNGIEATREIRSMGIK-----IKIVGVTSL-NSEAEREAF 116
++RS + ++ +D MPVM+G AT +IR++ K +IV +T + N EA+R+AF
Sbjct: 1143 VYRSRPDGYFLILMDISMPVMDGFTATMKIRALENKQRLPRTRIVALTGVTNQEAKRQAF 1202
Query: 117 MQAGLDLCHTKPLSVDKILPLM 138
AG+D + KP+ + ++ L+
Sbjct: 1203 -DAGVDEYYAKPVRMKELRELV 1223
>gi|410463155|ref|ZP_11316689.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409983732|gb|EKO40087.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 580
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ R AL+ LG V+ A +G+EA+ + GA +D+V +D +MP +NG+EA
Sbjct: 461 LLAEDEPVNRIFTVRALQKLGHAVDAAADGREALTMLERGA-YDLVLMDIQMPRLNGLEA 519
Query: 89 TREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR IRS ++ + +V +T+ E +R+ ++AG++ TKP +++ ME
Sbjct: 520 TRRIRSGQVEGVSPAMPVVALTAYAMEGDRQKGLEAGMNEYVTKPFEPAELVAAME 575
>gi|386283722|ref|ZP_10060946.1| hypothetical protein SULAR_00680 [Sulfurovum sp. AR]
gi|385345265|gb|EIF51977.1| hypothetical protein SULAR_00680 [Sulfurovum sp. AR]
Length = 876
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
ML E E SS+ EN + KN+ + LV +D+ + + L LG +V +A NG+EA
Sbjct: 728 MLNEKEDSSETK---ENLTFKNVHV--LVAEDNKINQKLILNVLGRLGIEVTIANNGQEA 782
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK-----IKIVGVTSLNSEAEREAF 116
++ R ++D++F+D EMPVM G+EAT +I S K I IV +T+ +RE +
Sbjct: 783 LEQ-RMKHEYDMIFMDIEMPVMGGMEATGQIISYERKNHKSHIPIVALTANALAGDREKY 841
Query: 117 MQAGLDLCHTKPLSVDKILPLME 139
M AG+D +KP+ + + L E
Sbjct: 842 MSAGMDSYLSKPIDLGALNHLFE 864
>gi|336251307|ref|YP_004595017.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter aerogenes KCTC 2190]
gi|334737363|gb|AEG99738.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter aerogenes KCTC 2190]
Length = 950
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+ N + LVVDD R + + L SLG++ A +G +A+++ S DIV D
Sbjct: 818 PTVSNDDMMILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL-SKQHIDIVLSDV 876
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
MP M+G T+ IR + + + ++GVT+ E++ +++G+D C +KP+++D
Sbjct: 877 NMPNMDGYRLTQRIRQLEMTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. 4H-3-7+YE-5]
gi|410639810|ref|ZP_11350355.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola chathamensis
S18K6]
gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. 4H-3-7+YE-5]
gi|410140691|dbj|GAC08542.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola chathamensis
S18K6]
Length = 1172
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLF-----ALVVDDDCFIRTIHSMALKSLGFKVEVAENG 58
G SSS + E P K L + L+V+D+ + + LK L V+VAENG
Sbjct: 1022 GALSSSSPAKAVQEEPDVKLLNKYFQTPNILLVEDNFINQQVVIEMLKKLHCSVQVAENG 1081
Query: 59 KEAVDLFRSGAK-FDIVFIDKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAE 112
+EA+ K FD++ +D +MP+M+G EA+R+IR + + I+ +T+ + +
Sbjct: 1082 QEAIHTLEDADKGFDLILMDCQMPIMDGYEASRKIRNNLHSNYASTLPIIALTANAMKGD 1141
Query: 113 REAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
REA + AG++ +KP+ + ++ ++ +K
Sbjct: 1142 REACLSAGMNAYLSKPIILAELKTELQKWLK 1172
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFIDKEMP 81
L LVVDD+ + I L + +V A+N A+ R S AK D+ ID +P
Sbjct: 902 LQVLVVDDNPTLSAILGQWLTTQNIQVYHAQNASLALKRLREQQLSSAKIDVALIDTSLP 961
Query: 82 VMNGIEATREIRS 94
+NGIE T+ IRS
Sbjct: 962 GINGIELTKAIRS 974
>gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
Length = 785
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
ES+ KK + P AK+ L+ DD+ + + LG +V+VAENG AV +
Sbjct: 496 ESAPKKQQEAPKPRAKSHHFKILLADDNRVNAIVAKGFCEKLGHEVDVAENGLIAVKKAK 555
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRS-MGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
++D++ +D MP MNG+EATR IR +GIK + T+ ++F++AG D
Sbjct: 556 EN-EYDLILMDNHMPEMNGVEATRVIRQELGIKTLLFAYTADVFREAHDSFIEAGADHVL 614
Query: 126 TKPLS 130
TKPL
Sbjct: 615 TKPLQ 619
>gi|377811302|ref|YP_005043742.1| hypothetical protein BYI23_D007090 [Burkholderia sp. YI23]
gi|357940663|gb|AET94219.1| hypothetical protein BYI23_D007090 [Burkholderia sp. YI23]
Length = 1311
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD-LFRSGAKFDIVFIDKEMPVMN 84
L LVV+D+ R + L++ G V +AE+G+E VD + + FD V +D +MP ++
Sbjct: 978 LALLVVEDNALNRQVAEGVLRAEGANVTLAESGREGVDRIMAAQGSFDAVLMDVQMPDLD 1037
Query: 85 GIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
G+EATR IR S + I+ +T+ S A+R+A +QAG++ KP+ V++++ ++
Sbjct: 1038 GLEATRLIRADSRFDALPIIAMTANASGADRDACLQAGMNDHVGKPIDVERLVAVL 1093
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 21 AKNLRLFA------LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV----DLFRSGAK 70
A+N R F L+ DD+ I S ++SLG+ +V +G EAV D S A
Sbjct: 818 ARNQRAFPDHGAHILIADDNAIAGEILSRTVRSLGWHADVVTSGTEAVARIADAAHSAAP 877
Query: 71 FDIVFIDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREA 115
+DI +D MP ++G+ A +++ +M ++ ++ VT+ + E RE+
Sbjct: 878 YDIALLDWRMPGLDGLNAAKQVSAMNGRVAPPLVLLVTAFSREVLRES 925
>gi|312869863|ref|ZP_07730003.1| putative response regulator MprA [Lactobacillus oris PB013-T2-3]
gi|417886165|ref|ZP_12530313.1| putative response regulator MprA [Lactobacillus oris F0423]
gi|311094603|gb|EFQ52907.1| putative response regulator MprA [Lactobacillus oris PB013-T2-3]
gi|341594032|gb|EGS36843.1| putative response regulator MprA [Lactobacillus oris F0423]
Length = 221
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + + +A+ S G++V+ +NG++ VDL + A +D++ +D MPV +G++A
Sbjct: 4 LLAEDEAQLARVLKLAMTSSGYQVDAVDNGQKVVDLAAANA-YDVMILDIMMPVKSGLDA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
RE+R+ G + ++ +T++ E +R + AG D TKP S+ ++L + L
Sbjct: 63 LRELRARGDRTYVIMLTAMAEEDDRVTGLDAGADDYLTKPFSLKELLARLRSL 115
>gi|357633257|ref|ZP_09131135.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357581811|gb|EHJ47144.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 575
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 68/111 (61%), Gaps = 6/111 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L V+DD L++ GF +++A +G+EA++L R FD++ +D ++PV++G+EA
Sbjct: 454 LFVEDDAVNALSGKSLLRTAGFSLDLAMDGREALELLRQ-KHFDLILMDIQLPVLDGVEA 512
Query: 89 TREIRSMG-----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
TR IRS ++ I+ +T+ +RE F++AG D +KP +++++
Sbjct: 513 TRVIRSAKEFESQSRVPIIAMTAYAMAGDREKFLKAGFDAYLSKPFTMEEL 563
>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1526
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 14/131 (10%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E+ ++LR+ L+ +D+ + + L+SLG+K +V NG+E +DL + +D++ +
Sbjct: 1243 EDRPRQSLRI--LLAEDNPVNQKVALRQLESLGYKADVVANGQEVLDLLQK-VSYDLILM 1299
Query: 77 DKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D +MPVM+G EATR +R G + ++ +T+ + +RE +QAG+D +KP+
Sbjct: 1300 DCQMPVMDGYEATRRLRQQERRSGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPV--- 1356
Query: 133 KILPLMEDLMK 143
L EDL +
Sbjct: 1357 ----LKEDLQR 1363
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS- 67
S A+I + K L L VDD+ R I + G VE AEN +A+D R
Sbjct: 1084 SQPSARIPVDLQGKRL----LAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQA 1139
Query: 68 ---GAKFDIVFIDKEMPVMNGIEATREIRS 94
G F + +D +MP ++G R I++
Sbjct: 1140 VREGRPFPLAVLDMQMPEVDGETLGRWIKA 1169
>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1627
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D R + L+S+GF V+ A NG+EA+ ++ S K D++F+D MPVMNG EA
Sbjct: 1421 LVVEDKFSNRLLLLKLLQSIGFDVKEAHNGQEAITIW-SSWKPDLIFMDIRMPVMNGYEA 1479
Query: 89 TREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
T+ I+S G + I+ +T+ E +R+ + AG D KP ++IL ++
Sbjct: 1480 TQYIKSTPEGNQTVIIALTASAFEEDRQMILSAGCDDFIRKPFQEEEILTVI 1531
>gi|453080942|gb|EMF08992.1| putative histidine kinase M3YPp [Mycosphaerella populorum SO2202]
Length = 967
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 12/122 (9%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-------SGAKFDIVFIDKEMP 81
L+V+D+ + + L+ G++V VA +G EA+D R G D+V +D EMP
Sbjct: 840 LLVEDNLVNQKVMDRQLRRAGYQVHVANHGGEALDHIRRSTYCQRDGVPLDVVLMDIEMP 899
Query: 82 VMNGIEATREIRSMGI---KIKIVGVTS-LNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
VM G+E TR IR+M ++ IV +T+ SE + EA + AG+D TKP + ++L +
Sbjct: 900 VMGGLECTRRIRNMPAVRRRLAIVAITANARSEQQTEA-LNAGVDAVVTKPFQMGELLGV 958
Query: 138 ME 139
++
Sbjct: 959 VD 960
>gi|419836290|ref|ZP_14359732.1| his Kinase A domain protein [Vibrio cholerae HC-46B1]
gi|421342782|ref|ZP_15793187.1| his Kinase A domain protein [Vibrio cholerae HC-43B1]
gi|421354197|ref|ZP_15804529.1| his Kinase A domain protein [Vibrio cholerae HE-45]
gi|422307289|ref|ZP_16394451.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
gi|423735198|ref|ZP_17708401.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
gi|424009127|ref|ZP_17752069.1| his Kinase A domain protein [Vibrio cholerae HC-44C1]
gi|395943299|gb|EJH53974.1| his Kinase A domain protein [Vibrio cholerae HC-43B1]
gi|395953322|gb|EJH63935.1| his Kinase A domain protein [Vibrio cholerae HE-45]
gi|408621976|gb|EKK94966.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
gi|408630234|gb|EKL02862.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
gi|408857768|gb|EKL97450.1| his Kinase A domain protein [Vibrio cholerae HC-46B1]
gi|408864638|gb|EKM04068.1| his Kinase A domain protein [Vibrio cholerae HC-44C1]
Length = 574
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|340788769|ref|YP_004754234.1| hybrid sensory histidine kinase in two-component regulatory system
with EvgA [Collimonas fungivorans Ter331]
gi|340554036|gb|AEK63411.1| Hybrid sensory histidine kinase in two-component regulatory system
with EvgA [Collimonas fungivorans Ter331]
Length = 1229
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
RL LV DD+ R + L+ LG VE AE+G+EA+ ++R+G+ FD+V D MPVM+
Sbjct: 981 RLRVLVADDNVANRLVLCQQLQYLGHDVESAEDGREALQIWRAGS-FDLVMTDCNMPVMS 1039
Query: 85 GIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
G + REIR+ + V G T+ E + AG+D C KP+ +D +
Sbjct: 1040 GYQLAREIRNETETPRCVIWGYTANAQPEEIQRCKAAGMDDCLFKPIGLDDL 1091
>gi|420373598|ref|ZP_14873678.1| response regulator [Shigella flexneri 1235-66]
gi|391317085|gb|EIQ74453.1| response regulator [Shigella flexneri 1235-66]
Length = 187
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 58 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 116
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++
Sbjct: 117 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 167
>gi|343501642|ref|ZP_08739514.1| hypothetical protein VITU9109_22331 [Vibrio tubiashii ATCC 19109]
gi|418478820|ref|ZP_13047913.1| para-aminobenzoate synthase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342817346|gb|EGU52229.1| hypothetical protein VITU9109_22331 [Vibrio tubiashii ATCC 19109]
gi|384573370|gb|EIF03864.1| para-aminobenzoate synthase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 565
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD + I + LK L ++A NG EA+ F S A +D+VF+D MP M+G EA
Sbjct: 453 LVVDDIRMNQVIINQMLKKLSITPDMANNGLEAIKAFNS-ASYDLVFMDCRMPEMDGFEA 511
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
T +R + I+ +T+ + ERE +Q G+D TKP + + ++E
Sbjct: 512 TAYLREQAYTLPIIALTAGTTLEEREKCIQCGMDDILTKPYTAKDLKLMLE 562
>gi|392545166|ref|ZP_10292303.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
rubra ATCC 29570]
Length = 800
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
K LR AL VDD + R I L + G +V+ AE+GK+A+DL + A FDIVF+D MP
Sbjct: 588 KTLR--ALCVDDVAYNREILGQTLAACGIEVDYAEDGKQAIDLIQKSA-FDIVFLDLLMP 644
Query: 82 VMNGIEATREIRS-MGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
VM G EA IR+ +G+ ++K V +++ + E + ++ G D KP ++++I
Sbjct: 645 VMRGDEAVVVIRNELGLSELKCVAISAFSLHHEVQHYLSIGFDQFIGKPYTIEQIF 700
>gi|284009349|emb|CBA76532.1| two-component system, NarL family, capsular synthesis sensor
histidine kinase [Arsenophonus nasoniae]
Length = 952
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
+M + + ++ I+ P K L L+VDD R++ + LKS+GF + +AE+G
Sbjct: 800 VMENSEQEVANQSSIISLPDKKLCFLTVLIVDDHPINRSLLADQLKSIGFNIVLAEDGLI 859
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
A+D R DIV D MP ++G T+ IR G I IV +T+ E++ + G
Sbjct: 860 ALDCVRQN-NIDIVLTDVNMPNLDGYGLTKLIREEGYAIPIVALTANAMAEEKQRCLSVG 918
Query: 121 LDLCHTKPLS 130
+D C +KP++
Sbjct: 919 MDDCLSKPVT 928
>gi|239905744|ref|YP_002952483.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795608|dbj|BAH74597.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 721
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R L+ +DD R + L LG +V VA+NG+EA+ L FD++ +D +MPVMN
Sbjct: 591 RYRILLAEDDAINRMVAVGMLGKLGHQVTVAQNGREAL-LLLDAQSFDLMLLDVQMPVMN 649
Query: 85 GIEATREIRS-MGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
G+E + +R G + + +V T+ + ++ E F++AG++ C KPL D + + +
Sbjct: 650 GVEVAKAVREGWGGRPDMPLVATTAYSMNSQCENFLEAGMNECLVKPLEYDTLKHAISRV 709
Query: 142 MK 143
M+
Sbjct: 710 ME 711
>gi|424045767|ref|ZP_17783332.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-03]
gi|408885954|gb|EKM24651.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-03]
Length = 576
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 11 KKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK 70
+ KI +N +K + L LVV+D + + + L LG V +A NG EA+ +
Sbjct: 443 RPVKIEQNHPSKAMNL--LVVEDTESNQLVIKLILNKLGHNVFIASNGAEALTFLEEQRQ 500
Query: 71 -FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
DI+ +D MPVM+GI ATR IR GI I+ +T+ E+++ M+AG+D +KP+
Sbjct: 501 SIDIILMDVSMPVMDGITATRLIRQKGISTPIIALTAHALESDKTTCMKAGMDGFVSKPV 560
Query: 130 SVDKILPLMEDLMK 143
I ++ L++
Sbjct: 561 RRQDIYEAIQSLVE 574
>gi|254286108|ref|ZP_04961068.1| sensor histidine kinase/response regulator [Vibrio cholerae
AM-19226]
gi|150423777|gb|EDN15718.1| sensor histidine kinase/response regulator [Vibrio cholerae
AM-19226]
Length = 572
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIXIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|238490202|ref|XP_002376338.1| sensory transduction histidine kinase, putative [Aspergillus flavus
NRRL3357]
gi|220696751|gb|EED53092.1| sensory transduction histidine kinase, putative [Aspergillus flavus
NRRL3357]
Length = 655
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + I + L+SLGF+V NG+EA+D+ + + FD + +D+ MPVM+G A
Sbjct: 538 LVVEDNVINQRIVARKLESLGFQVTAVSNGREALDMVQQ-STFDCILMDQAMPVMDGNSA 596
Query: 89 TREIRSMG----IKIKIVGVTSLNSEAEREAFMQ-AGLDLCHTKPLSVDKILPLMEDLM 142
TR +R + I ++GVT+ N AE++A M+ AG+D KP + + ++ LM
Sbjct: 597 TRAVRDLEKHGMAHIPVLGVTA-NVRAEQQAEMKAAGMDDVIHKPYKMRDLCDRIQQLM 654
>gi|391865538|gb|EIT74818.1| sensory transduction histidine kinase, putative [Aspergillus oryzae
3.042]
Length = 655
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + I + L+SLGF+V NG+EA+D+ + + FD + +D+ MPVM+G A
Sbjct: 538 LVVEDNVINQRIVARKLESLGFQVTAVSNGREALDMVQQ-STFDCILMDQAMPVMDGNSA 596
Query: 89 TREIRSMG----IKIKIVGVTSLNSEAEREAFMQ-AGLDLCHTKPLSVDKILPLMEDLM 142
TR +R + I ++GVT+ N AE++A M+ AG+D KP + + ++ LM
Sbjct: 597 TRAVRDLEKHGMAHIPVLGVTA-NVRAEQQAEMKAAGMDDVIHKPYKMRDLCDRIQQLM 654
>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
regulator [Geobacter bemidjiensis Bem]
gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
domain-containing [Geobacter bemidjiensis Bem]
Length = 947
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
LRL L+ +DD IR + + L+ L F V+ AE+G + V+++R G ++D++ +D +MP M
Sbjct: 827 LRL--LIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQG-EYDLILMDVQMPRM 883
Query: 84 NGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+G +ATR IR G +I I+ +T+ + ++ + AG+D +KP++
Sbjct: 884 DGFQATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPIN 932
>gi|375146036|ref|YP_005008477.1| signal transduction histidine kinase [Niastella koreensis GR20-10]
gi|361060082|gb|AEV99073.1| signal transduction histidine kinase [Niastella koreensis GR20-10]
Length = 1347
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Query: 29 LVVDDDCFIRTIHSMA--LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+VDDD +R I+S+ L+ G K VAENG+ A+++ DIV +D MP M+G
Sbjct: 1230 LIVDDD--MRNIYSLTNVLEEEGMKCVVAENGRVAIEMLEKQPDTDIVLMDIMMPEMDGF 1287
Query: 87 EATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
EAT IR M K+ I+ +T+ + +RE ++AG+ +KP++++++L LM
Sbjct: 1288 EATMAIRKMNRFNKLPIIALTAKAMKGDREKCLEAGMSDYVSKPVNMEQLLSLM 1341
>gi|392413394|ref|YP_006450001.1| putative ATPase [Desulfomonile tiedjei DSM 6799]
gi|390626530|gb|AFM27737.1| putative ATPase [Desulfomonile tiedjei DSM 6799]
Length = 2046
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ F + + L+ G +V +A NGKEAV F S FD++ +D +MP M+G EA
Sbjct: 1778 LLAEDNVFNQAVAMEVLRKQGCEVTLASNGKEAVQAFDS-QPFDVILMDVQMPEMDGFEA 1836
Query: 89 TREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TR IRS +I I+ T+ + +R+ +AG+D KPL + ++L ++E
Sbjct: 1837 TRIIRSRETSGRIPIIAQTAHAFKEDRDRCKRAGMDEHIPKPLRIPQLLTVLE 1889
>gi|417950762|ref|ZP_12593879.1| putative histidine kinase [Vibrio splendidus ATCC 33789]
gi|342805982|gb|EGU41224.1| putative histidine kinase [Vibrio splendidus ATCC 33789]
Length = 1070
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ LK G+ E+A+NG+ AVD++++ + FDI+ +D MPVM+G A
Sbjct: 951 LLVEDNRVNQKVASVMLKKAGYTFEIADNGQIAVDMYQNDSSFDIILMDCMMPVMDGFTA 1010
Query: 89 TREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
TREIR ++G+ K I+ +T+ + + + +G+D KP+ +K+ +E
Sbjct: 1011 TREIREHEKNLGLTKTPIIALTASVIDDDIQKCFDSGMDGYVAKPVRKEKLFHQIE 1066
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + I + + GF+ E A NG+EAVD+F + + + +D MPVM+G EA
Sbjct: 779 LIVEDNKINQKIAGLHVGKSGFEFEFANNGQEAVDMFTANPHYAAILMDCMMPVMDGFEA 838
Query: 89 TREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T IR + +I I+ +T+ + + + G+D KP
Sbjct: 839 TDHIRRIEKETQATRRIPIIALTASVIDDDIQKCFDVGMDDYVPKPF 885
>gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
gi|146272574|dbj|BAF58323.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
Length = 2071
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +D + + L+ LG +VA NG+EAV+ F S + +V +D MPVM+G EA
Sbjct: 1809 LVAEDFAINQKLIQAQLRKLGLAADVAGNGREAVEAF-SRNSYALVLMDCRMPVMDGFEA 1867
Query: 89 TREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
TR IRS+ G + I+ T+ ERE + AG+D TKP+ MEDL +
Sbjct: 1868 TRAIRSLEALRGRRTPIIATTAAAMPGEREKCLSAGMDDYLTKPVR-------MEDLQR 1919
>gi|262169261|ref|ZP_06036953.1| signal transduction histidine kinase [Vibrio cholerae RC27]
gi|262022074|gb|EEY40783.1| signal transduction histidine kinase [Vibrio cholerae RC27]
Length = 570
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|255745823|ref|ZP_05419771.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
gi|262153458|ref|ZP_06028589.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
gi|360035340|ref|YP_004937103.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 str.
2010EL-1786]
gi|417813458|ref|ZP_12460114.1| his Kinase A domain protein [Vibrio cholerae HC-49A2]
gi|417816322|ref|ZP_12462954.1| his Kinase A domain protein [Vibrio cholerae HCUF01]
gi|418337213|ref|ZP_12946111.1| his Kinase A domain protein [Vibrio cholerae HC-23A1]
gi|418344731|ref|ZP_12950513.1| his Kinase A domain protein [Vibrio cholerae HC-28A1]
gi|418348881|ref|ZP_12953615.1| his Kinase A domain protein [Vibrio cholerae HC-43A1]
gi|419825923|ref|ZP_14349427.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
gi|421316436|ref|ZP_15767007.1| his Kinase A domain protein [Vibrio cholerae CP1032(5)]
gi|421325042|ref|ZP_15775568.1| his Kinase A domain protein [Vibrio cholerae CP1041(14)]
gi|421328702|ref|ZP_15779216.1| his Kinase A domain protein [Vibrio cholerae CP1042(15)]
gi|421331726|ref|ZP_15782206.1| his Kinase A domain protein [Vibrio cholerae CP1046(19)]
gi|422891554|ref|ZP_16933927.1| his Kinase A domain protein [Vibrio cholerae HC-40A1]
gi|422902761|ref|ZP_16937755.1| his Kinase A domain protein [Vibrio cholerae HC-48A1]
gi|422906644|ref|ZP_16941468.1| his Kinase A domain protein [Vibrio cholerae HC-70A1]
gi|422913223|ref|ZP_16947740.1| his Kinase A domain protein [Vibrio cholerae HFU-02]
gi|422925703|ref|ZP_16958726.1| his Kinase A domain protein [Vibrio cholerae HC-38A1]
gi|423145026|ref|ZP_17132633.1| his Kinase A domain protein [Vibrio cholerae HC-19A1]
gi|423149701|ref|ZP_17137029.1| his Kinase A domain protein [Vibrio cholerae HC-21A1]
gi|423153514|ref|ZP_17140708.1| his Kinase A domain protein [Vibrio cholerae HC-22A1]
gi|423156329|ref|ZP_17143433.1| his Kinase A domain protein [Vibrio cholerae HC-32A1]
gi|423731010|ref|ZP_17704322.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
gi|423892699|ref|ZP_17726379.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
gi|423927618|ref|ZP_17730997.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
gi|424002347|ref|ZP_17745431.1| his Kinase A domain protein [Vibrio cholerae HC-17A2]
gi|424006181|ref|ZP_17749159.1| his Kinase A domain protein [Vibrio cholerae HC-37A1]
gi|424024199|ref|ZP_17763857.1| his Kinase A domain protein [Vibrio cholerae HC-62B1]
gi|424027048|ref|ZP_17766659.1| his Kinase A domain protein [Vibrio cholerae HC-69A1]
gi|424586323|ref|ZP_18025910.1| his Kinase A domain protein [Vibrio cholerae CP1030(3)]
gi|424595025|ref|ZP_18034357.1| his Kinase A domain protein [Vibrio cholerae CP1040(13)]
gi|424598893|ref|ZP_18038082.1| his Kinase A domain protein [Vibrio Cholerae CP1044(17)]
gi|424606621|ref|ZP_18045579.1| his Kinase A domain protein [Vibrio cholerae CP1050(23)]
gi|424617247|ref|ZP_18055931.1| his Kinase A domain protein [Vibrio cholerae HC-42A1]
gi|424652716|ref|ZP_18090150.1| his Kinase A domain protein [Vibrio cholerae HC-57A2]
gi|440709697|ref|ZP_20890354.1| signal transduction histidine kinase [Vibrio cholerae 4260B]
gi|443503533|ref|ZP_21070509.1| his Kinase A domain protein [Vibrio cholerae HC-64A1]
gi|443507432|ref|ZP_21074214.1| his Kinase A domain protein [Vibrio cholerae HC-65A1]
gi|443511562|ref|ZP_21078214.1| his Kinase A domain protein [Vibrio cholerae HC-67A1]
gi|443515117|ref|ZP_21081641.1| his Kinase A domain protein [Vibrio cholerae HC-68A1]
gi|443518910|ref|ZP_21085319.1| his Kinase A domain protein [Vibrio cholerae HC-71A1]
gi|443523805|ref|ZP_21090028.1| his Kinase A domain protein [Vibrio cholerae HC-72A2]
gi|443538753|ref|ZP_21104608.1| his Kinase A domain protein [Vibrio cholerae HC-81A1]
gi|449056073|ref|ZP_21734741.1| Signal transduction histidine kinase [Vibrio cholerae O1 str. Inaba
G4222]
gi|255736898|gb|EET92295.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
gi|262030759|gb|EEY49392.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
gi|340041044|gb|EGR02013.1| his Kinase A domain protein [Vibrio cholerae HC-49A2]
gi|340042048|gb|EGR03014.1| his Kinase A domain protein [Vibrio cholerae HCUF01]
gi|341623146|gb|EGS48712.1| his Kinase A domain protein [Vibrio cholerae HC-70A1]
gi|341623183|gb|EGS48748.1| his Kinase A domain protein [Vibrio cholerae HC-48A1]
gi|341624209|gb|EGS49717.1| his Kinase A domain protein [Vibrio cholerae HC-40A1]
gi|341639295|gb|EGS63916.1| his Kinase A domain protein [Vibrio cholerae HFU-02]
gi|341647141|gb|EGS71231.1| his Kinase A domain protein [Vibrio cholerae HC-38A1]
gi|356419366|gb|EHH72914.1| his Kinase A domain protein [Vibrio cholerae HC-21A1]
gi|356424428|gb|EHH77834.1| his Kinase A domain protein [Vibrio cholerae HC-19A1]
gi|356430615|gb|EHH83821.1| his Kinase A domain protein [Vibrio cholerae HC-22A1]
gi|356432791|gb|EHH85988.1| his Kinase A domain protein [Vibrio cholerae HC-23A1]
gi|356435929|gb|EHH89065.1| his Kinase A domain protein [Vibrio cholerae HC-28A1]
gi|356441729|gb|EHH94617.1| his Kinase A domain protein [Vibrio cholerae HC-32A1]
gi|356447620|gb|EHI00411.1| his Kinase A domain protein [Vibrio cholerae HC-43A1]
gi|356646494|gb|AET26549.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 str.
2010EL-1786]
gi|395920712|gb|EJH31534.1| his Kinase A domain protein [Vibrio cholerae CP1041(14)]
gi|395921393|gb|EJH32213.1| his Kinase A domain protein [Vibrio cholerae CP1032(5)]
gi|395930208|gb|EJH40957.1| his Kinase A domain protein [Vibrio cholerae CP1042(15)]
gi|395932990|gb|EJH43733.1| his Kinase A domain protein [Vibrio cholerae CP1046(19)]
gi|395961148|gb|EJH71490.1| his Kinase A domain protein [Vibrio cholerae HC-57A2]
gi|395963999|gb|EJH74244.1| his Kinase A domain protein [Vibrio cholerae HC-42A1]
gi|395975055|gb|EJH84553.1| his Kinase A domain protein [Vibrio cholerae CP1030(3)]
gi|408033657|gb|EKG70189.1| his Kinase A domain protein [Vibrio cholerae CP1040(13)]
gi|408043205|gb|EKG79213.1| his Kinase A domain protein [Vibrio Cholerae CP1044(17)]
gi|408044486|gb|EKG80399.1| his Kinase A domain protein [Vibrio cholerae CP1050(23)]
gi|408610004|gb|EKK83380.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
gi|408625152|gb|EKK98072.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
gi|408655775|gb|EKL26883.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
gi|408657261|gb|EKL28347.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
gi|408846748|gb|EKL86833.1| his Kinase A domain protein [Vibrio cholerae HC-37A1]
gi|408847073|gb|EKL87146.1| his Kinase A domain protein [Vibrio cholerae HC-17A2]
gi|408871210|gb|EKM10454.1| his Kinase A domain protein [Vibrio cholerae HC-62B1]
gi|408879734|gb|EKM18685.1| his Kinase A domain protein [Vibrio cholerae HC-69A1]
gi|439975286|gb|ELP51422.1| signal transduction histidine kinase [Vibrio cholerae 4260B]
gi|443432125|gb|ELS74659.1| his Kinase A domain protein [Vibrio cholerae HC-64A1]
gi|443435964|gb|ELS82089.1| his Kinase A domain protein [Vibrio cholerae HC-65A1]
gi|443439504|gb|ELS89205.1| his Kinase A domain protein [Vibrio cholerae HC-67A1]
gi|443443605|gb|ELS96894.1| his Kinase A domain protein [Vibrio cholerae HC-68A1]
gi|443447461|gb|ELT04104.1| his Kinase A domain protein [Vibrio cholerae HC-71A1]
gi|443450207|gb|ELT10488.1| his Kinase A domain protein [Vibrio cholerae HC-72A2]
gi|443466342|gb|ELT41001.1| his Kinase A domain protein [Vibrio cholerae HC-81A1]
gi|448264409|gb|EMB01647.1| Signal transduction histidine kinase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 570
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|229521544|ref|ZP_04410963.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80]
gi|229341642|gb|EEO06645.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80]
Length = 576
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|398799249|ref|ZP_10558541.1| signal transduction histidine kinase [Pantoea sp. GM01]
gi|398099117|gb|EJL89389.1| signal transduction histidine kinase [Pantoea sp. GM01]
Length = 950
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
+ L+VDD R + S L ++G++ + A++G +A+++ S DIV D MP M+G
Sbjct: 826 IIVLIVDDHPINRMLLSEQLGTVGYQTKTAQDGVDALNVL-SRNHIDIVLSDVNMPNMDG 884
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
T+ +R +G ++GVT+ E++ M+AG+D C +KP+++D ++
Sbjct: 885 YRLTQRLRQLGHTFPVIGVTANALAEEKQRCMEAGMDNCLSKPVTLDVLI 934
>gi|383780470|ref|YP_005465036.1| putative two-component system response regulator [Actinoplanes
missouriensis 431]
gi|381373702|dbj|BAL90520.1| putative two-component system response regulator [Actinoplanes
missouriensis 431]
Length = 235
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+DD +R + L+ G++VE A +G A+D R+G D V +D MP M+G+EA
Sbjct: 7 LVVEDDAAVRDSLARTLRFEGYQVESAGDGHAALDAVRAGEP-DAVILDVNMPGMDGLEA 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R +R+ G+ + ++ +T+ ++ +R A + AG D KP ++ ++L + L++ +
Sbjct: 66 CRRMRADGVVLPVLMLTARDTVGDRVAGLDAGADDYLVKPFALQELLARIRALLRRS 122
>gi|229515810|ref|ZP_04405269.1| signal transduction histidine kinase [Vibrio cholerae TMA 21]
gi|229347579|gb|EEO12539.1| signal transduction histidine kinase [Vibrio cholerae TMA 21]
Length = 572
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 67/111 (60%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLERNHAFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVK 567
>gi|167648426|ref|YP_001686089.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
K31]
gi|167350856|gb|ABZ73591.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
K31]
Length = 627
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P RL L DD+ + + + L LG +VE+ +G V+ ++ G FDIV +D
Sbjct: 487 PIESERRLRVLAADDNPTNQKVIAAVLAPLGAEVELVADGAACVEAWKRGG-FDIVLMDI 545
Query: 79 EMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
MPVM+G+EA R IRS+ + +I IV VT+ + E +M AG+D KP+ V K
Sbjct: 546 HMPVMDGVEAARTIRSLEVSEGRKRIPIVAVTANALVHQVEGYMAAGMDGHVAKPIEVTK 605
Query: 134 ILPLME 139
+ +E
Sbjct: 606 LYDAIE 611
>gi|423953553|ref|ZP_17734561.1| his Kinase A domain protein [Vibrio cholerae HE-40]
gi|423983000|ref|ZP_17738112.1| his Kinase A domain protein [Vibrio cholerae HE-46]
gi|408659376|gb|EKL30426.1| his Kinase A domain protein [Vibrio cholerae HE-40]
gi|408664931|gb|EKL35752.1| his Kinase A domain protein [Vibrio cholerae HE-46]
Length = 570
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|386391600|ref|ZP_10076381.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385732478|gb|EIG52676.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1071
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+DD R S L+ LG +V +A NG EAV A FD VF+D +MPVM+G+EA
Sbjct: 947 LLVEDDAVNRLAASRLLEKLGCEVVLAGNGVEAVAAAGREA-FDCVFMDVQMPVMDGLEA 1005
Query: 89 TREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TR IR+ G+ + IV +T+ +RE F+ AG+ KP+
Sbjct: 1006 TRRIRAAGLAGLPIVAMTAYAMSRDREKFLAAGMTDYIAKPV 1047
>gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC
[Erwinia amylovora CFBP1430]
gi|428785765|ref|ZP_19003254.1| Two component sensor kinase/response regulator protein RcsC
[Erwinia amylovora ACW56400]
gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC
[Erwinia amylovora CFBP1430]
gi|426275629|gb|EKV53358.1| Two component sensor kinase/response regulator protein RcsC
[Erwinia amylovora ACW56400]
Length = 987
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + S L SLG++V+ A++G +A+++ + DIV D MP
Sbjct: 854 NDDILILVVDDHPINRMLLSDQLGSLGYRVKTAQDGVDALNVIGRN-EIDIVLTDVNMPN 912
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ +R +G ++GVT+ E++ ++AG+D C +KP++++ +
Sbjct: 913 MDGYRLTQRLRELGKTFPVIGVTANALAEEKQRCIEAGMDNCLSKPVTMETL 964
>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
155]
gi|160012470|sp|A0R3I8.1|MPRA_MYCS2 RecName: Full=Response regulator MprA; AltName: Full=Mycobacterial
persistence regulator A
gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
155]
Length = 230
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+D + + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAI-TNNRPDALILDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>gi|448575396|ref|ZP_21641766.1| response regulator CheY [Haloferax larsenii JCM 13917]
gi|448590764|ref|ZP_21650529.1| response regulator CheY [Haloferax elongans ATCC BAA-1513]
gi|445731242|gb|ELZ82828.1| response regulator CheY [Haloferax larsenii JCM 13917]
gi|445734260|gb|ELZ85819.1| response regulator CheY [Haloferax elongans ATCC BAA-1513]
Length = 122
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD F+R + L+ V AENG EAV+L+R + D+V +D MP+ NGIEA
Sbjct: 6 LVVDDSAFMRNLLKQLLEGEHEVVGEAENGVEAVELYRE-LEPDVVTMDVVMPIRNGIEA 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T EI+S+ ++ TS+ E + ++AG D TKP +L + D+++
Sbjct: 65 TSEIKSLDSNASVIMCTSVGQEEKMREAVEAGADGYITKPFQKPNVLQAIADVIQ 119
>gi|417820850|ref|ZP_12467464.1| his Kinase A domain protein [Vibrio cholerae HE39]
gi|340038481|gb|EGQ99455.1| his Kinase A domain protein [Vibrio cholerae HE39]
Length = 572
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|297579033|ref|ZP_06940961.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
gi|297536627|gb|EFH75460.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
Length = 572
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|254226277|ref|ZP_04919869.1| sensor histidine kinase/response regulator [Vibrio cholerae V51]
gi|125621191|gb|EAZ49533.1| sensor histidine kinase/response regulator [Vibrio cholerae V51]
Length = 572
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|15641456|ref|NP_231088.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121588029|ref|ZP_01677780.1| sensor histidine kinase/response regulator [Vibrio cholerae
2740-80]
gi|153817899|ref|ZP_01970566.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
8457]
gi|153822685|ref|ZP_01975352.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
gi|227081617|ref|YP_002810168.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
gi|229504980|ref|ZP_04394490.1| signal transduction histidine kinase [Vibrio cholerae BX 330286]
gi|229511351|ref|ZP_04400830.1| signal transduction histidine kinase [Vibrio cholerae B33]
gi|229518469|ref|ZP_04407913.1| signal transduction histidine kinase [Vibrio cholerae RC9]
gi|229607983|ref|YP_002878631.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236]
gi|254848565|ref|ZP_05237915.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
gi|298498476|ref|ZP_07008283.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|298499372|ref|ZP_07009178.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|379741240|ref|YP_005333209.1| signal transduction histidine kinase [Vibrio cholerae IEC224]
gi|418332472|ref|ZP_12943404.1| his Kinase A domain protein [Vibrio cholerae HC-06A1]
gi|418354975|ref|ZP_12957696.1| his Kinase A domain protein [Vibrio cholerae HC-61A1]
gi|421321047|ref|ZP_15771604.1| his Kinase A domain protein [Vibrio cholerae CP1038(11)]
gi|421335301|ref|ZP_15785767.1| his Kinase A domain protein [Vibrio cholerae CP1048(21)]
gi|421339191|ref|ZP_15789626.1| his Kinase A domain protein [Vibrio cholerae HC-20A2]
gi|421347377|ref|ZP_15797759.1| his Kinase A domain protein [Vibrio cholerae HC-46A1]
gi|423160153|ref|ZP_17147121.1| his Kinase A domain protein [Vibrio cholerae HC-33A2]
gi|423164879|ref|ZP_17151630.1| his Kinase A domain protein [Vibrio cholerae HC-48B2]
gi|424601623|ref|ZP_18040775.1| his Kinase A domain protein [Vibrio cholerae CP1047(20)]
gi|424610451|ref|ZP_18049302.1| his Kinase A domain protein [Vibrio cholerae HC-39A1]
gi|424613258|ref|ZP_18052059.1| his Kinase A domain protein [Vibrio cholerae HC-41A1]
gi|424622022|ref|ZP_18060543.1| his Kinase A domain protein [Vibrio cholerae HC-47A1]
gi|424644993|ref|ZP_18082741.1| his Kinase A domain protein [Vibrio cholerae HC-56A2]
gi|424656576|ref|ZP_18093874.1| his Kinase A domain protein [Vibrio cholerae HC-81A2]
gi|443531410|ref|ZP_21097425.1| his Kinase A domain protein [Vibrio cholerae HC-7A1]
gi|443535192|ref|ZP_21101081.1| his Kinase A domain protein [Vibrio cholerae HC-80A1]
gi|9655945|gb|AAF94602.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547724|gb|EAX57816.1| sensor histidine kinase/response regulator [Vibrio cholerae
2740-80]
gi|126511526|gb|EAZ74120.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
8457]
gi|126519805|gb|EAZ77028.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
gi|227009505|gb|ACP05717.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
gi|229345184|gb|EEO10158.1| signal transduction histidine kinase [Vibrio cholerae RC9]
gi|229351316|gb|EEO16257.1| signal transduction histidine kinase [Vibrio cholerae B33]
gi|229357203|gb|EEO22120.1| signal transduction histidine kinase [Vibrio cholerae BX 330286]
gi|229370638|gb|ACQ61061.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236]
gi|254844270|gb|EET22684.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
gi|297541353|gb|EFH77404.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|297542809|gb|EFH78859.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|356419031|gb|EHH72601.1| his Kinase A domain protein [Vibrio cholerae HC-06A1]
gi|356448484|gb|EHI01254.1| his Kinase A domain protein [Vibrio cholerae HC-33A2]
gi|356453377|gb|EHI06040.1| his Kinase A domain protein [Vibrio cholerae HC-61A1]
gi|356454260|gb|EHI06912.1| his Kinase A domain protein [Vibrio cholerae HC-48B2]
gi|378794750|gb|AFC58221.1| signal transduction histidine kinase [Vibrio cholerae IEC224]
gi|395924029|gb|EJH34840.1| his Kinase A domain protein [Vibrio cholerae CP1038(11)]
gi|395936255|gb|EJH46983.1| his Kinase A domain protein [Vibrio cholerae CP1048(21)]
gi|395944139|gb|EJH54813.1| his Kinase A domain protein [Vibrio cholerae HC-20A2]
gi|395946437|gb|EJH57101.1| his Kinase A domain protein [Vibrio cholerae HC-46A1]
gi|395960065|gb|EJH70456.1| his Kinase A domain protein [Vibrio cholerae HC-56A2]
gi|395971892|gb|EJH81521.1| his Kinase A domain protein [Vibrio cholerae HC-47A1]
gi|395977172|gb|EJH86594.1| his Kinase A domain protein [Vibrio cholerae CP1047(20)]
gi|408008119|gb|EKG46136.1| his Kinase A domain protein [Vibrio cholerae HC-39A1]
gi|408014252|gb|EKG51911.1| his Kinase A domain protein [Vibrio cholerae HC-41A1]
gi|408055179|gb|EKG90119.1| his Kinase A domain protein [Vibrio cholerae HC-81A2]
gi|443458493|gb|ELT25889.1| his Kinase A domain protein [Vibrio cholerae HC-7A1]
gi|443461655|gb|ELT32717.1| his Kinase A domain protein [Vibrio cholerae HC-80A1]
Length = 572
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|424590938|ref|ZP_18030371.1| his Kinase A domain protein [Vibrio cholerae CP1037(10)]
gi|408033620|gb|EKG70154.1| his Kinase A domain protein [Vibrio cholerae CP1037(10)]
Length = 570
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|384424550|ref|YP_005633908.1| Signal transduction histidine kinase [Vibrio cholerae LMA3984-4]
gi|327484103|gb|AEA78510.1| Signal transduction histidine kinase [Vibrio cholerae LMA3984-4]
Length = 570
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
Length = 968
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR--SGAKFDIVFIDKEMPVMNGI 86
L+V+D+ R I L GF V+ AENG EAV+ + + K+D+V +D +MPVMNG
Sbjct: 848 LLVEDNELNREIAVEILNEYGFLVDTAENGAEAVEKVKNSTSGKYDLVLMDVQMPVMNGY 907
Query: 87 EATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
EAT++IR++ I I+ +T+ + +R+ ++ G+D +KP+ +++++ ++
Sbjct: 908 EATKQIRALDDPALSGITILAMTANAFDEDRKKALEYGMDGFLSKPIVIEELISTLQ 964
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIVFIDKEMP 81
L ALVVDDD + L +G + E +GKEAV R G F ID +P
Sbjct: 703 LKALVVDDDFNTCDSVTKMLVRVGMRSEWTLSGKEAVLRARQSMELGDAFHAYIIDWRLP 762
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTKPL 129
MNGIE TR+IRS+G I+ +T+ + S+ E EA AG+ KPL
Sbjct: 763 DMNGIEVTRQIRSLGDDTPIIILTAYDWSDIEAEA-RAAGVTAFCAKPL 810
>gi|292655361|ref|YP_003535258.1| response regulator CheY [Haloferax volcanii DS2]
gi|433423871|ref|ZP_20406366.1| response regulator CheY [Haloferax sp. BAB2207]
gi|448292068|ref|ZP_21482742.1| response regulator CheY [Haloferax volcanii DS2]
gi|448541259|ref|ZP_21624090.1| response regulator CheY [Haloferax sp. ATCC BAA-646]
gi|448549644|ref|ZP_21628249.1| response regulator CheY [Haloferax sp. ATCC BAA-645]
gi|448555244|ref|ZP_21631284.1| response regulator CheY [Haloferax sp. ATCC BAA-644]
gi|448561869|ref|ZP_21635002.1| response regulator CheY [Haloferax prahovense DSM 18310]
gi|448571559|ref|ZP_21639818.1| response regulator CheY [Haloferax lucentense DSM 14919]
gi|448586054|ref|ZP_21648226.1| response regulator CheY [Haloferax gibbonsii ATCC 33959]
gi|448596312|ref|ZP_21653652.1| response regulator CheY [Haloferax alexandrinus JCM 10717]
gi|448602761|ref|ZP_21656696.1| response regulator CheY [Haloferax sulfurifontis ATCC BAA-897]
gi|448624920|ref|ZP_21670687.1| response regulator CheY [Haloferax denitrificans ATCC 35960]
gi|291370602|gb|ADE02829.1| response regulator CheY [Haloferax volcanii DS2]
gi|432198210|gb|ELK54516.1| response regulator CheY [Haloferax sp. BAB2207]
gi|445573587|gb|ELY28108.1| response regulator CheY [Haloferax volcanii DS2]
gi|445708421|gb|ELZ60261.1| response regulator CheY [Haloferax sp. ATCC BAA-646]
gi|445712692|gb|ELZ64473.1| response regulator CheY [Haloferax sp. ATCC BAA-645]
gi|445717989|gb|ELZ69692.1| response regulator CheY [Haloferax sp. ATCC BAA-644]
gi|445719965|gb|ELZ71642.1| response regulator CheY [Haloferax prahovense DSM 18310]
gi|445721904|gb|ELZ73568.1| response regulator CheY [Haloferax lucentense DSM 14919]
gi|445725672|gb|ELZ77295.1| response regulator CheY [Haloferax gibbonsii ATCC 33959]
gi|445742000|gb|ELZ93498.1| response regulator CheY [Haloferax alexandrinus JCM 10717]
gi|445747113|gb|ELZ98570.1| response regulator CheY [Haloferax sulfurifontis ATCC BAA-897]
gi|445748682|gb|EMA00128.1| response regulator CheY [Haloferax denitrificans ATCC 35960]
Length = 122
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD F+R + L+ V AENG EAV+L+R + D+V +D MP+ NGIEA
Sbjct: 6 LVVDDSAFMRNLLKQLLEGEHEVVGEAENGVEAVELYRE-LEPDVVTMDVVMPIRNGIEA 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
T EI+S+ ++ TS+ E + ++AG D TKP +L + D+++
Sbjct: 65 TSEIKSLDAGASVIMCTSVGQEEKMREAVEAGADGYITKPFQKPNVLQAIADVIQ 119
>gi|255615825|ref|XP_002539710.1| two-component sensor protein histidine protein kinase, putative
[Ricinus communis]
gi|223503312|gb|EEF22673.1| two-component sensor protein histidine protein kinase, putative
[Ricinus communis]
Length = 319
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
++ G+ ++ A++ P L + L+V+D+ + + L G VEVA NGK
Sbjct: 162 LLAGDQATAGLMAQLEHTPLQDRLSGMRILLVEDNEINQEVAEYMLLHAGASVEVAANGK 221
Query: 60 EAVD-LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFM 117
AV+ L + ++D+V +D +MPVMNG +ATREIR G + + I+ +T+ E +R
Sbjct: 222 LAVERLAAAPERYDVVLMDIQMPVMNGYDATREIRRQGLLTLPIIAMTANVLEDDRRRAA 281
Query: 118 QAGLDLCHTKPLSVDKILPLMEDLM 142
+AG++ KP+ V++++ ++ L+
Sbjct: 282 EAGMNAHVAKPIDVEELITVLTRLV 306
>gi|453063756|gb|EMF04732.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia marcescens VGH107]
Length = 953
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+A N ++ LVVDD R + S L SLG++V A +G +A+ + + DIV D
Sbjct: 822 AADNGDIYLLVVDDHPINRRLLSDQLGSLGYQVVTANDGVDALGVLKQ-HHVDIVLTDVN 880
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ +R M ++GVT+ E++ ++AG+D C +KP++++ +
Sbjct: 881 MPNMDGYRLTQALRQMQFSAPVIGVTANALAEEKQRCLEAGMDNCLSKPVTLETL 935
>gi|408675244|ref|YP_006874992.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
gi|387856868|gb|AFK04965.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
Length = 821
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + L+ G KVE+A NG+E V+ FRS +D + +D +MP M+G +A
Sbjct: 577 LLVEDNAMNQFFAQKLLEGWGMKVEIAHNGREGVEKFRS-KYYDCILMDIQMPEMDGFQA 635
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
T+ IR+ KI I+ +T+L E E + F + G++ KP D++L
Sbjct: 636 TKLIRAESPKIPIIALTALMIEEEIDHFTRVGMNDYIGKPFVADELL 682
>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Diplosphaera colitermitum TAV2]
gi|224802028|gb|EEG20304.1| Histidine kinase [Diplosphaera colitermitum TAV2]
Length = 678
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P A R+ LVV+D+ + + L+ LG +VAE+G+ A+++ + ++ +D
Sbjct: 439 PDAHTPRV--LVVEDNLINQKVAQRHLERLGHTCDVAEHGRRALEMLALHHDYALILMDC 496
Query: 79 EMPVMNGIEATREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+MPV++G E TR IR+ + +I IV +T+ E +R+ + AG+D C KP+ +++
Sbjct: 497 QMPVLDGYETTRRIRAGAVPGLDPRIPIVALTAYAMETDRQKCLDAGMDDCLIKPVRLEE 556
Query: 134 ILPLME 139
+ +++
Sbjct: 557 LQAMLD 562
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKEMPVMN 84
LVVDD I L+ +G VE + + ++G+ F I +D+ MPV++
Sbjct: 296 LVVDDSATNLRILDGQLRQMGLGVETLSDPTRTLARLHHASQTGSPFQIAILDRYMPVLD 355
Query: 85 GIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
GIE R IR+ I ++K+V +TS + E + Q GLD KP
Sbjct: 356 GIELARRIRADSILQRMKVVMLTSASHLGELDRVRQLGLDAFLVKP 401
>gi|150018828|ref|YP_001311082.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
gi|149905293|gb|ABR36126.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
Length = 502
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVV+DD + + LK LG+ +++A NG EA+ F +FD++ +D ++P ++G E
Sbjct: 278 LVVEDDKINQIVIKKVLKELGYINIKIASNGVEALK-FIENYRFDLILMDVQLPELDGSE 336
Query: 88 ATREIRSMGIK----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
R IR IK I IV +T+ + +RE F+ G+D +KP+ ++K+ ++E +K
Sbjct: 337 TVRIIRKNEIKTGGHIPIVAMTAYALKGDRERFLSQGMDDYISKPIDINKLKKILERTLK 396
Query: 144 N 144
N
Sbjct: 397 N 397
>gi|399989722|ref|YP_006570072.1| Two-component system response regulator [Mycobacterium smegmatis
str. MC2 155]
gi|399234284|gb|AFP41777.1| Two-component system response regulator [Mycobacterium smegmatis
str. MC2 155]
Length = 228
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+D + + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAI-TNNRPDALILDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|417756480|ref|ZP_12404555.1| his Kinase A domain protein [Escherichia coli DEC2B]
gi|419035363|ref|ZP_13582449.1| his Kinase A domain protein [Escherichia coli DEC2D]
gi|377873896|gb|EHU38527.1| his Kinase A domain protein [Escherichia coli DEC2B]
gi|377879719|gb|EHU44291.1| his Kinase A domain protein [Escherichia coli DEC2D]
Length = 647
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ DIV D M
Sbjct: 518 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKN-HIDIVLSDVNM 576
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 577 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 630
>gi|343510610|ref|ZP_08747833.1| hypothetical protein VIS19158_18001 [Vibrio scophthalmi LMG 19158]
gi|342801579|gb|EGU37039.1| hypothetical protein VIS19158_18001 [Vibrio scophthalmi LMG 19158]
Length = 897
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + I S+ L G +V NG +AVD+ +SG FD + +D MPVM+G+ A
Sbjct: 772 LIVEDNLMNQKIASLFLNKAGLDYQVVSNGADAVDVIQSGGAFDAILMDCMMPVMDGLTA 831
Query: 89 TREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
TREIR + I I+ +T+ + ++ +AG+D KP ++ + E L
Sbjct: 832 TREIRQWEQRNGHQAIPIIALTASVLPEDIDSCFEAGMDAYLAKPYKSKQLFEIFEQL 889
>gi|121728449|ref|ZP_01681475.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
gi|121629273|gb|EAX61708.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
Length = 406
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
+S+S +I+ + KN + LVV+D + + + L LG+ V +AENG +AV+L
Sbjct: 274 QSASSSQQIV---NVKNHHI--LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE 328
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FD+V +D MP+M+GI AT+ +R I+I I+ +T+ + ++++ + AG++
Sbjct: 329 KNHVFDLVLMDISMPIMDGIAATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVL 388
Query: 127 KPLSVDKILPLMEDLM 142
KP+ I+ +++ +
Sbjct: 389 KPIRSKDIMEVVKRFL 404
>gi|406678409|ref|ZP_11085585.1| hypothetical protein HMPREF1170_03793 [Aeromonas veronii AMC35]
gi|404622490|gb|EKB19353.1| hypothetical protein HMPREF1170_03793 [Aeromonas veronii AMC35]
Length = 905
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 10 SKKAKIMENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S + K+ P+ + L+ + L VDD+ + + LK + +V V +NGKEAV +S
Sbjct: 648 SSRQKLPALPAPRQLQPIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVKQAQS- 706
Query: 69 AKFDIVFIDKEMPVMNGIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
FDI+F+D +MP+M+GI AT+ IR S+ IV VT+ ERE ++ G+D
Sbjct: 707 QPFDIIFMDIQMPIMDGISATQAIRNQSLNTTTPIVAVTAHAIPGERERLIRQGMDDYLA 766
Query: 127 KPLSVDKILPLMEDL 141
KP+ + L+ D
Sbjct: 767 KPIDESMLAQLITDF 781
>gi|197116920|ref|YP_002137347.1| response receiver [Geobacter bemidjiensis Bem]
gi|197086280|gb|ACH37551.1| response receiver [Geobacter bemidjiensis Bem]
Length = 125
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +DD IR + + L GF +NG++AV+ + FD +F+D +MPVM+G A
Sbjct: 4 LVAEDDPTIRQMMATLLSRCGFDCRSVDNGRKAVEAWED-ETFDFIFMDVQMPVMDGFAA 62
Query: 89 TREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
TR IR G I+ +T+ E +R+ + +G+D +KP+ +D++ L+++
Sbjct: 63 TRMIREKEALKGGHTPIIALTAHAMEQDRQQCLDSGMDDYLSKPIDLDELFSLLKN 118
>gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC
[Erwinia amylovora ATCC BAA-2158]
Length = 987
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + S L SLG++V+ A++G +A+++ + DIV D MP
Sbjct: 854 NDDILILVVDDHPINRMLLSDQLGSLGYRVKTAQDGVDALNVIGRN-EIDIVLTDVNMPN 912
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ +R +G ++GVT+ E++ ++AG+D C +KP++++ +
Sbjct: 913 MDGYRLTQRLRELGKTFPVIGVTANALAEEKQRCIEAGMDNCLSKPVTMETL 964
>gi|336315070|ref|ZP_08569983.1| signal transduction histidine kinase [Rheinheimera sp. A13L]
gi|335880692|gb|EGM78578.1| signal transduction histidine kinase [Rheinheimera sp. A13L]
Length = 1019
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD +R + S LKS G +++ A NG +A+ + FD++ +D MPVM+G+ A
Sbjct: 809 LIVDDVPDLRLLFSTLLKSTGLEIQTAFNGLDAIQKV-TLEPFDLILMDMHMPVMDGLTA 867
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TREIR +G ++ ++ +T+ ++ +QAG TKP+
Sbjct: 868 TREIRRLGYQLPVIALTADVQVEQKRLCLQAGCHAVLTKPV 908
>gi|334117198|ref|ZP_08491290.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333462018|gb|EGK90623.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1314
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E + S ++ +E P+ + RL L+VDD R + L LGF++ A NGKEAVD+
Sbjct: 1086 ESKKSQRRVIALE-PNQPSYRL--LIVDDKPLNRQLLVKLLSPLGFELREANNGKEAVDI 1142
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLD 122
F ++++D MPVM+G EAT++I++ G IV +T+ E ER + AG D
Sbjct: 1143 FMEWEP-HLIWMDMRMPVMDGYEATKQIKTTTGGQATAIVALTASVLEEERAVILSAGCD 1201
Query: 123 LCHTKPLSVDKILPLM 138
KP + I M
Sbjct: 1202 DFMRKPFREEDIFVAM 1217
>gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
Length = 1215
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + + L + G++VE A +G+E + + FD++ +D +MP ++G+EA
Sbjct: 866 LVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAK-ATTTSFDLILMDLQMPRLDGVEA 924
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TR +R+ G+ IV +T+ + + ER+ ++ G D TKP+
Sbjct: 925 TRRLRARGVVTPIVALTANDLDGERQRCLEQGFDDYLTKPV 965
>gi|153829718|ref|ZP_01982385.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
gi|148874797|gb|EDL72932.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
Length = 572
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLDRNRAFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|440682866|ref|YP_007157661.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428679985|gb|AFZ58751.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 996
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D R + LK +GF V ENG EA+++++ D++++D +MPVMNG EA
Sbjct: 792 LIVEDILENRQLIVKLLKYVGFDVCAVENGLEAIEIYKEWEP-DLIWMDIQMPVMNGYEA 850
Query: 89 TREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
T++IR+M G K+ I+ +T+ E +++A +Q G D KP
Sbjct: 851 TKKIRAMAQGKKLMIIALTASAFEEDKKAILQVGCDDIVAKPF 893
>gi|421351208|ref|ZP_15801573.1| his Kinase A domain protein [Vibrio cholerae HE-25]
gi|395951653|gb|EJH62267.1| his Kinase A domain protein [Vibrio cholerae HE-25]
Length = 570
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLDRNHAFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|386394482|ref|ZP_10079263.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385735360|gb|EIG55558.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1919
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+ LRL L+ +DD + L+ G +V+ A++G +A+ L G +D + +D
Sbjct: 1775 PAGPGLRL--LLAEDDAVSMLSFARMLEKAGHRVDTADDGAKAMALVARG-DYDCILMDV 1831
Query: 79 EMPVMNGIEATREIR---SMGIK--IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+MPVM+G+ ATR IR S+G K + I+ +T+ +RE F+ AG+D +KP+ +D
Sbjct: 1832 QMPVMDGVAATRAIRTDASLGQKARVPIIAMTAYAMAGDREKFLAAGMDDYVSKPVDLDV 1891
Query: 134 ILPLME 139
++ +E
Sbjct: 1892 LMEALE 1897
>gi|170745073|ref|YP_001766530.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170658674|gb|ACB27728.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 589
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D R I M L+++G++V VA NG+EAV L R+ A +D+V +D EMPVM+GI A
Sbjct: 463 LLVEDGAINREIAQMVLEAMGYRVSVACNGQEAVALVRAQA-YDLVLMDVEMPVMDGIAA 521
Query: 89 TREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLSVDKILPLME 139
TR IR + + V + ++ + E A AG D KP + ++E
Sbjct: 522 TRSIRGLDGALGAVPIIAMTAHVLPEQVRALRAAGADDHVGKPFDRAHLRAVIE 575
>gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 903
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 16 MENPSAKNLR-LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ PS ++++ + L VDD+ + + LK + +V V +NGKEAV L +S FDI+
Sbjct: 654 LPTPSPRSVQEIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVRLAQS-QPFDII 712
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIK--IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
F+D +MP+M+GI AT+ IRS + + IV VT+ ERE ++ G+D KP+
Sbjct: 713 FMDIQMPIMDGISATQAIRSQSLNTETPIVAVTAHAILGERERLIRQGMDDYLAKPIDEA 772
Query: 133 KILPLMEDL 141
+ L+ D
Sbjct: 773 MLAKLITDF 781
>gi|386284471|ref|ZP_10061693.1| integral membrane sensor hybrid histidine kinase [Sulfurovum sp.
AR]
gi|385344756|gb|EIF51470.1| integral membrane sensor hybrid histidine kinase [Sulfurovum sp.
AR]
Length = 624
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 8 SSSKKAKIMENPSAKNLRLF----ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
S KK KI+ + + ++ F ALV DD+ + + L++LG +V V +GKEAV
Sbjct: 480 SEHKKEKILTSDTVEDTEQFQGLHALVADDNQINCKLIKIILENLGLEVTVVNDGKEAVA 539
Query: 64 LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK-----IKIVGVTSLNSEAEREAFMQ 118
+ +DI+F+D EMP+M+G+EA + I + + I+ +T+ S ++E +M
Sbjct: 540 MSTKNV-YDIIFMDIEMPIMDGVEACKHIVEHETEHHLKHVPIIALTANTSSGDKEKYMS 598
Query: 119 AGLDLCHTKPLSVDKI 134
G+D KPL ++ +
Sbjct: 599 KGMDDYAVKPLDIEAL 614
>gi|429204437|ref|ZP_19195725.1| DNA-binding response regulator [Lactobacillus saerimneri 30a]
gi|428147221|gb|EKW99449.1| DNA-binding response regulator [Lactobacillus saerimneri 30a]
Length = 227
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + + +MA++SL + V+VA NG+EAVDL + A +D + +D MPV +GI A
Sbjct: 4 LLAEDEEQLARVVTMAIQSLNYTVDVAHNGQEAVDLAATNA-YDAIILDIMMPVKDGITA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
+EIR+ G + I+ +T+ +R + G D TKP S+ ++L + + + N
Sbjct: 63 LKEIRARGDRTYIMMLTAKAEIDDRVLGLDTGADDYLTKPFSLKELLARLRSIERRN 119
>gi|333984092|ref|YP_004513302.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333808133|gb|AEG00803.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1099
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P R+ LV +D R + L+ LGF+V+ AENG+EAV LF+ + ++ +D+
Sbjct: 893 PGQPTFRI--LVAEDQLDNRLLLVNLLEPLGFQVKHAENGREAVTLFQEW-RPHLILMDR 949
Query: 79 EMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILP 136
+MP+M+G+EAT+ IR + G ++KIV VT+ +R + AG+D +KP +I
Sbjct: 950 QMPIMDGVEATKVIRRLAEGRQVKIVAVTASAFSEQRTELLIAGMDSFISKPFQAGEIYE 1009
Query: 137 LMEDLM 142
+ L+
Sbjct: 1010 CLSSLL 1015
>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1152
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFA-LVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
+ G + A E SA+ F L+V+D+ + + L+ LG+K V ENG+E
Sbjct: 879 LFGNAPETCAAAPEQETKSAQAASEFTVLLVEDNQVNQMVAKGILRKLGYKTLVVENGQE 938
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI-----KIVGVTSLNSEAEREA 115
A++ F + + DI+ +D +MPVM+G+EATR IR K+ I+ +T+ + +RE
Sbjct: 939 ALE-FLAEKQVDIILMDIQMPVMDGLEATRRIRDGRHKVLDPGAPIIAMTARAMKGDREK 997
Query: 116 FMQAGLDLCHTKPL 129
+ AG+D TKP+
Sbjct: 998 CLDAGMDDYITKPI 1011
>gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
Length = 933
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP++++ I
Sbjct: 863 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLEVI 916
>gi|229523471|ref|ZP_04412876.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
VL426]
gi|229337052|gb|EEO02069.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
VL426]
Length = 572
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 858
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA--KFDIVFIDKEMPVMNGI 86
L+V+D+ R I LK GF+VE AE+G+ AV + A ++D++ +D +MP M+G
Sbjct: 738 LLVEDNELNREIAVEILKEAGFEVESAEDGEIAVRKMKQAADGQYDLILMDIQMPNMDGY 797
Query: 87 EATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
EATR+IR++ I I +T+ E +R+ ++AG++ KPL + +L ++ D++
Sbjct: 798 EATRQIRALPDAAKAGIPIFAMTANAFEEDRQNALKAGMNGHIAKPLDIPHLLQVLADVL 857
Query: 143 K 143
K
Sbjct: 858 K 858
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR-- 66
S +K ++ + P + LR ALV DDD S L +G + E +G+EAV R
Sbjct: 580 SGQKVELRQLPQLEGLR--ALVADDDTDTCLSVSTMLSKIGMRPEWTISGREAVIRTRYA 637
Query: 67 --SGAKFDIVFIDKEMPVMNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDL 123
G +F + ID +P MNGIE R+IR + K I+ +T+ + E AG+
Sbjct: 638 MEQGDEFSVYIIDWLIPDMNGIEIVRQIRKVIRKSCPIIILTAYDWADIEEEARAAGVTA 697
Query: 124 CHTKPLSVDKI 134
KPL + ++
Sbjct: 698 FCEKPLFLSEL 708
>gi|153827167|ref|ZP_01979834.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
gi|149738929|gb|EDM53251.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
Length = 572
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLDRNHAFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I+I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli]
Length = 933
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 804 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 862
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ R +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 863 PNMDGYRLTQRTRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 916
>gi|373487149|ref|ZP_09577818.1| PAS sensor protein [Holophaga foetida DSM 6591]
gi|372010031|gb|EHP10644.1| PAS sensor protein [Holophaga foetida DSM 6591]
Length = 1464
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+V+D+ F + + + L G KV+VAENG +++ R+G +D+V +D +MPVM+G
Sbjct: 1134 LKVLLVEDNDFNQQVATELLADAGIKVDVAENGLISLEKVRTGT-YDLVLMDMQMPVMDG 1192
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
I AT +R G ++ I+ +T+ +A+R+ AG++ KP+ D++ ++
Sbjct: 1193 ITATVRLREEGHRMPIIAMTANAMQADRDRCTSAGMNDYLVKPIDPDEMFRVL 1245
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
LG+G+ + ++ P + R+ LVVDD+ R + L S+ F+V +G EA+
Sbjct: 966 LGKGKP---RRALVPRPDLRGKRM--LVVDDNENARHVLVDILISMSFQVNEVASGAEAL 1020
Query: 63 DLFR----SGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI--KIVGVTSLNSEAEREAF 116
R SG +++VF+D +MP M+G+EA I+++G+ +++ VT+ E +
Sbjct: 1021 AAIRRAAASGQPYEVVFLDWQMPRMDGLEAAHHIKALGLDTAPRLIMVTAYGREEVLKGA 1080
Query: 117 MQAGLDLCHTKPLS 130
G++ KP+S
Sbjct: 1081 ETVGVEDVLIKPVS 1094
>gi|254483594|ref|ZP_05096818.1| response regulator receiver domain protein [marine gamma
proteobacterium HTCC2148]
gi|214036156|gb|EEB76839.1| response regulator receiver domain protein [marine gamma
proteobacterium HTCC2148]
Length = 552
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
++N + L+ +D + I S L LG+ ++ +G+EAVD R+G +D++F+D M
Sbjct: 420 SENHPMRILIAEDSEVNQFIISTMLGKLGYAADMVADGREAVDASRAG-DYDLIFMDIRM 478
Query: 81 PVMNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
P MNG EAT++IR I+ IV +T+ +A++ + AG+D TKP+S+++++
Sbjct: 479 PNMNGKEATQKIRQAAIRQPTIVALTANAFDADKSQALSAGMDGFITKPISLERLV 534
>gi|343508875|ref|ZP_08746181.1| Signal transduction histidine kinase [Vibrio scophthalmi LMG 19158]
gi|342806656|gb|EGU41874.1| Signal transduction histidine kinase [Vibrio scophthalmi LMG 19158]
Length = 1070
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
E +S + KA + P A + L+V+D+ + + S+ L GF +AENG+ A+D+
Sbjct: 928 EKQSVNVKADHPDTPKAVSRHERILLVEDNRVNQKVASLMLDKAGFHYAIAENGQIAIDM 987
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIR----SMGI-KIKIVGVTSLNSEAEREAFMQA 119
+ + FD++ +D MPV +G EAT+EIR ++G+ K I+ +T+ + + + +
Sbjct: 988 YSEDSSFDVILMDCMMPVKDGFEATKEIRQHEANLGLTKTPIIALTASVIDDDIQRCFDS 1047
Query: 120 GLDLCHTKPLSVDKILPLMEDLM 142
G+D KP+ D ++ +E ++
Sbjct: 1048 GMDAYVAKPVRKDNLIEKIESII 1070
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LVV+D+ + I + L G + ++A +G+EAVD++R+ ++ ++ +D MP+M+G
Sbjct: 780 LVVEDNSVNQKIAGLHLVKAGLEFDIANDGQEAVDMYRATPDRYALILMDCMMPIMDGFA 839
Query: 88 ATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV----DKILPLME 139
AT E+R + +I I+ +T+ + + + G+D KP +KI L+E
Sbjct: 840 ATTELRKLERHLNRRIPIIALTASVIDDDVQRCFDVGMDDYIAKPFRANVLQEKIFNLIE 899
>gi|355683008|ref|ZP_09062782.1| hypothetical protein HMPREF9469_05819 [Clostridium citroniae
WAL-17108]
gi|354810733|gb|EHE95372.1| hypothetical protein HMPREF9469_05819 [Clostridium citroniae
WAL-17108]
Length = 924
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-----FDIVFIDKEMPVM 83
L+V+D+ R I + L G V+ A +G EAV++ S K +D++F+D MP M
Sbjct: 805 LLVEDNEVNREIAATILSHAGLTVDTASDGLEAVEIMESMEKTGPGTYDLIFMDIMMPRM 864
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+G EA+R IRS+G+ I +T+ +R+ M+AG+D KPL ++++ ++ +
Sbjct: 865 DGYEASRRIRSLGVSTPITAMTANAFAEDRKKAMEAGIDEYLAKPLEMEELYRVLRRFL 923
>gi|259502057|ref|ZP_05744959.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
gi|259169970|gb|EEW54465.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
Length = 221
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + + +MA+ + G++V+ +NG++ +DL + A +D++ +D MPV +G++A
Sbjct: 4 LLAEDEAQLARVLTMAMTTSGYQVDAVDNGQKVLDLAAANA-YDVMILDIMMPVKSGLDA 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
RE+R G + ++ +T++ E +R + AG D TKP S+ ++L + L
Sbjct: 63 LRELRDRGDRTYVIMLTAMAEEDDRVTGLDAGADDYLTKPFSLKELLARLRSL 115
>gi|414872712|tpg|DAA51269.1| TPA: hypothetical protein ZEAMMB73_053135 [Zea mays]
Length = 138
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE--NGKEAVDLFRSG---AK 70
M +A+ + L+V+D+ R + L+S VE+ E G EAV R G A
Sbjct: 1 MAGAAAERKVIRVLLVEDEEIHRVLARALLRSACGGVELHEAGTGAEAVRRVRDGGAAAA 60
Query: 71 FDIVFIDKEMPVMNGIE----ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
+D++ D +MPVM+G E ATR+IR+MG+ IVG++S + +AF++AG D
Sbjct: 61 YDLIITDWKMPVMDGHEVRHAATRQIRAMGVTTPIVGLSSDTLPPDVDAFIKAGADDFTP 120
Query: 127 KPLSVDKILPLM 138
KPLS +K++ ++
Sbjct: 121 KPLSKEKLVRIL 132
>gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia
amylovora ATCC 49946]
gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia
amylovora ATCC 49946]
Length = 956
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + S L SLG++V+ A++G +A+++ + DIV D MP
Sbjct: 823 NDDILILVVDDHPINRMLLSDQLGSLGYRVKTAQDGVDALNVIGRN-EIDIVLTDVNMPN 881
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ +R +G ++GVT+ E++ ++AG+D C +KP++++ +
Sbjct: 882 MDGYRLTQRLRELGKTFPVIGVTANALAEEKQRCIEAGMDNCLSKPVTMETL 933
>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
Length = 1129
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
SS ++I E S + LR+ LV +D + + + LK G + +A+NG+EAVD R+
Sbjct: 842 SSSVSQIRE--SKQTLRV--LVAEDTPANQKVINAILKKRGHQCVIADNGREAVDCLRNE 897
Query: 69 AKFDIVFIDKEMPVMNGIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
+ FD+V +D +MP M+G++AT IR G+ I+ +T+ +R+ + AG+D
Sbjct: 898 S-FDVVLMDVQMPTMDGLQATAMIRENEYGSGVHTPIIAMTAYAMRGDRDKCIAAGMDSY 956
Query: 125 HTKPLSVDKILPLMEDL 141
+KP+ K++ ++E L
Sbjct: 957 ISKPIDAKKLILILERL 973
>gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
Length = 863
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
+GE ++ + +AK + ++L L+V+D+ + I S L+ G++ +A NG+EAV
Sbjct: 720 VGEEQAPTVEAK---DEEVRSLNRRILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAV 776
Query: 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAEREAFM 117
D+ GA+FD + +D MPVM+GI ATR IR + I+ +T+ E + +
Sbjct: 777 DVITQGAQFDAILMDCMMPVMDGITATRAIRQWETDQQAAPLPIIALTASVLEEDIKHCF 836
Query: 118 QAGLDLCHTKPLSVDKILPLMEDL 141
+AG++ KP ++ L L
Sbjct: 837 EAGMNAYLPKPYKSHQLYDLFSSL 860
>gi|410625286|ref|ZP_11336072.1| ATPase-like response regulator receiver, ATP-binding region
[Glaciecola mesophila KMM 241]
gi|410155090|dbj|GAC22841.1| ATPase-like response regulator receiver, ATP-binding region
[Glaciecola mesophila KMM 241]
Length = 880
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+ LG ++AENG++AV + A +D+V +D +MPVM+G +A
Sbjct: 753 LLVEDNSINQVVTGEMLRVLGITFDIAENGQQAVTKVINSAHYDVVLMDIQMPVMDGYQA 812
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQA---GLDLCHTKPLSVDKILPLMEDLMK 143
T EIR G+ I + L++ A +E F+QA G++ TKPL L +ED+++
Sbjct: 813 TIEIRQQGLLDLI--ICGLSANAMKEDFVQAKEVGMNEYLTKPLK----LVALEDMLR 864
>gi|374813251|ref|ZP_09716988.1| sensory transduction histidine kinase [Treponema primitia ZAS-1]
Length = 903
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
L+ +D R I L+ +++ AENG+EAV++F K+D++F+D +MP M+G E
Sbjct: 779 LLAEDIDINREIVLALLEPTAIEIDTAENGREAVEMFSGNPDKYDMIFMDIQMPEMDGYE 838
Query: 88 ATREIRSMGIK----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
ATR IR++ K I I+ +T+ + E ++AG++ KPL++D++L + ++
Sbjct: 839 ATRRIRALDNKRAKEIPIIAMTANVFREDVERCLEAGMNGHVGKPLAMDEVLTKLRTFLR 898
Query: 144 NN 145
NN
Sbjct: 899 NN 900
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 9 SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG 68
S K + + KN+RL A VDDD I + L + A G EA+ +
Sbjct: 616 SEKNGLLRPGINWKNIRLLA--VDDDPDICAYFLDLAQQLDLHCDTAAGGTEALAMIEQK 673
Query: 69 AKFDIVFIDKEMPVMNGIEATREI--RSMG-----------IKIKIVGVTSLNSEAEREA 115
+DI F+D +MP M+G+E +R + RS G I I V +++ EA
Sbjct: 674 GPYDIYFVDWKMPGMDGVEFSRRVKERSSGTSAVSQPESVVIMISAVEWSTVMDEAR--- 730
Query: 116 FMQAGLDLCHTKPL 129
QAG+D +KPL
Sbjct: 731 --QAGVDKFLSKPL 742
>gi|365850435|ref|ZP_09390898.1| sensor kinase protein RcsC [Yokenella regensburgei ATCC 43003]
gi|364567101|gb|EHM44773.1| sensor kinase protein RcsC [Yokenella regensburgei ATCC 43003]
Length = 972
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + + L SLG++ + A +G +A+ + S DIV D MP
Sbjct: 844 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALSVL-SKNHIDIVLSDVNMPN 902
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
M+G T+ IR +G+ + +VGVT+ E++ +++G+D C +KP+ +D
Sbjct: 903 MDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVVLD 952
>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 828
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVMNGIE 87
L+ +D+ + + M L G++V VA NGKEA++ + S FD++F+D +MP M+G+
Sbjct: 680 LLAEDNFVNQKLARMMLTKAGYRVVVANNGKEALEKYMASPDDFDLIFMDVQMPEMDGLI 739
Query: 88 ATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
AT+ IR G I IV +T+ + +RE ++AG+D TKP+ + + ++E
Sbjct: 740 ATKTIREKGFDAIPIVAMTAHAMKGDREKCLEAGMDDYITKPIKREVVFEVLE 792
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----SGAKFDIVFIDKEMPVMN 84
LVVDD+ I + L+ G V +NG+ V + R +G FD+ D +MPVM+
Sbjct: 527 LVVDDNLRNLEILTHILEFAGMAVVALKNGEAVVPILRKALAAGNPFDLCISDIQMPVMS 586
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFM--QAGLDLCHTKPLSVDKILPLMEDLM 142
G E R +R+ + ++ + + +L+S EREA + +AG D +KP+ +K+L +M L+
Sbjct: 587 GYEVARRVRNEEVPLRDLPMIALSSFMEREAGLCKEAGFDGFLSKPIHREKLLQMMARLI 646
Query: 143 KN 144
+
Sbjct: 647 QT 648
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVD+D FI L G +V AE+G A+D+ + A D++F+D MP + G E
Sbjct: 9 LVVDNDRFILEFMKDVLSEKGHEVVTAEDGLSALDILETLAP-DVIFVDLIMPNIGGEEL 67
Query: 89 TREIR 93
IR
Sbjct: 68 CFLIR 72
>gi|415952681|ref|ZP_11557210.1| Sensor protein, partial [Herbaspirillum frisingense GSF30]
gi|407757347|gb|EKF67345.1| Sensor protein, partial [Herbaspirillum frisingense GSF30]
Length = 408
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 11/123 (8%)
Query: 29 LVVDDDCFIRTIHSMA--LKSLGFKVEVAENGKEAVD-LFRS----GAKFDIVFIDKEMP 81
LVV+DD +R I +++ L+ G KVE+A NG+EA+D L RS GA D+V +D MP
Sbjct: 286 LVVEDD--VRNIFALSSVLEPKGMKVEIARNGREALDALQRSQDKPGAVIDLVLMDIMMP 343
Query: 82 VMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
M+G+ A REIR I ++ I+ +T+ + ++E + AG + KPL V+K+L L+
Sbjct: 344 EMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLVR 403
Query: 140 DLM 142
M
Sbjct: 404 VWM 406
>gi|409992637|ref|ZP_11275816.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|409936513|gb|EKN77998.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 664
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LVVDD+ IR I +L+S ++V VA NG EA+ ++ K D V ID MPVM G
Sbjct: 543 LVVDDEEPIREITKASLESFQYQVLVAGNGVEAMKIYSQYLDKIDCVVIDIMMPVMGGKT 602
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
RE++S+ +IKIVG++ S + + G+D+ +KP + ++L +++ + ++
Sbjct: 603 TMRELKSLNPQIKIVGISGYFSVDIAKDIAELGVDIFLSKPFTTQELLEVLQKCLNSS 660
>gi|261253198|ref|ZP_05945771.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417954800|ref|ZP_12597831.1| putative sensor/response regulator hybrid [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260936589|gb|EEX92578.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342814771|gb|EGU49706.1| putative sensor/response regulator hybrid [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 565
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
GESSS + E P + L LVVDD + I + LK L E+A NG EA+
Sbjct: 434 GESSSDTG-LREKPLEE---LAILVVDDIRMNQVIINQMLKKLCITPEIANNGFEAIKAI 489
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
S K+D+VF+D MP M+G EAT +R + I+ +T+ + ERE ++ G+D
Sbjct: 490 -SHTKYDLVFMDCRMPEMDGFEATTYLREQKYDLPIIALTAGTTLEEREKCIECGMDDIL 548
Query: 126 TKPLSVDKILPLME 139
TKP S + ++E
Sbjct: 549 TKPYSAKDLQLMLE 562
>gi|337278154|ref|YP_004617625.1| histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729230|gb|AEG91606.1| candidate histidine kinase, unorthodox [Ramlibacter tataouinensis
TTB310]
Length = 740
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Query: 1 MMLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60
++LG+ E+ ++ ++ ++ LR+ LV DD R L+S+G +V + +NG+E
Sbjct: 460 LLLGQAEAPAEAPAVLATARSQPLRV--LVADDHPVNRRYLGAVLRSIGHEVTLCDNGEE 517
Query: 61 AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ-- 118
A+++ ++ +FD V +D MPVM+G+ ATR IR++G + + V +L ++ A +Q
Sbjct: 518 ALEIVQTD-RFDAVLMDIHMPVMDGLAATRAIRALGGRYADLPVVALTADVMPGARLQAV 576
Query: 119 -AGLDLCHTKPLSVDKILPLMED 140
AG+ +KP+ V+++ ++ D
Sbjct: 577 RAGISAFLSKPVGVEQLSAVLGD 599
>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf.
saccharolyticum K10]
Length = 885
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--FDIVFIDKEMPVMNGI 86
L+V+D+ R I S G +VE A NGKEAV+ F + FD++ +D +MPVM+G
Sbjct: 760 LIVEDNDLNREIAVTLFSSFGAEVETAVNGKEAVEAFEASEPGFFDLILMDVQMPVMDGY 819
Query: 87 EATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
EATR IRS+ G +I I+ +T+ ++ M G+D +KP+ + +++ +E ++
Sbjct: 820 EATRIIRSLDREDGREIPILAMTANAFSEDKAKSMACGMDGHISKPIDLKEVVEKIERVL 879
Query: 143 K 143
K
Sbjct: 880 K 880
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRSGAKFDIVFIDK 78
+LR+ A+ D DC + K + A + +EAV+ + +G +D+ D
Sbjct: 608 HLRVLAVDDDPDCLTHIKLLLKKLGA--KADTAMSCEEAVEKARLAYSAGEDYDVCLADW 665
Query: 79 EMPVMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+MP +G+E R +R + G KI VT+ +++ R AG KPL
Sbjct: 666 KMPSGDGVETIRRLRKLPGRKIAAALVTAYDTDEIRRDAELAGAACVVEKPL 717
>gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
gi|224955976|gb|EEG37185.1| response regulator receiver domain protein [Eubacterium hallii DSM
3353]
Length = 983
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG--AKFDIVFIDKEMPVMNGI 86
L+V+D+ I LK GF V+ AENG EAV+ ++ K+D+V +D +MPVMNG
Sbjct: 862 LLVEDNELNSEIAVEILKEYGFLVDTAENGAEAVEKVKNSTPGKYDLVLMDVQMPVMNGY 921
Query: 87 EATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
EATR+IR++ I I+ +T+ + +R+ ++ G+D +KP+ +++++ + +
Sbjct: 922 EATRQIRALDDPALSGITILAMTANAFDEDRKKALEYGMDGFLSKPIVIEELISTLHN 979
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS----GAKFDIVFIDKEMP 81
L ALVVDDD + L +G + E +GKEA+ R G F ID +P
Sbjct: 717 LKALVVDDDFNTCDSVTKMLVRVGMRSEWTLSGKEAILRARQSMELGDAFHAYIIDWRLP 776
Query: 82 VMNGIEATREIRSMGIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTKPLSVDKI 134
MNGIE TR+IRS+G I+ +T+ + S+ E EA AG+ KPL + I
Sbjct: 777 DMNGIEVTRQIRSLGDDTPIIILTAYDWSDIEAEA-RAAGVTAFCAKPLFMSDI 829
>gi|254415604|ref|ZP_05029363.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177554|gb|EDX72559.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1156
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD +T+ L+ LG++ E A NG EA+ ++ + +DIVF+D +MPV++G EA
Sbjct: 821 LLVDDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQAQS-YDIVFMDCQMPVLDGYEA 879
Query: 89 TREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
TRE+R + ++ +T+ E++RE + G+D +KP D + ++E K+
Sbjct: 880 TRELRRQEGSNRHTIVIALTASALESDREKCLAVGMDDFLSKPFDQDTLQAMIERWAKS 938
>gi|345863637|ref|ZP_08815846.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125186|gb|EGW55057.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 682
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +DD + + L G++V+ A++GK+A+DL RS FD+ +D MP M+GIE
Sbjct: 552 LVAEDDSISFQLINTMLTKAGYRVKRAQDGKQALDLSRSSG-FDLALVDVRMPHMDGIEF 610
Query: 89 TREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TR RS G ++ I+ +++ +E ++ + AG+D KP+ +K+ L+ +
Sbjct: 611 TRIYRSREKPGTRLPIIALSANTAEEVKQECLDAGMDAYLLKPVDTEKLNALLRHFL 667
>gi|345879424|ref|ZP_08831075.1| periplasmic sensor Hybrid histidine Kinase [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223556|gb|EGV50008.1| periplasmic sensor Hybrid histidine Kinase [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 704
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV +DD + + L G++V+ A++GK+A+DL RS FD+ +D MP M+GIE
Sbjct: 574 LVAEDDSISFQLINTMLTKAGYRVKRAQDGKQALDLSRSSG-FDLALVDVRMPHMDGIEF 632
Query: 89 TREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
TR RS G ++ I+ +++ +E ++ + AG+D KP+ +K+ L+ +
Sbjct: 633 TRIYRSREKPGTRLPIIALSANTAEEVKQECLDAGMDAYLLKPVDTEKLNALLRHFL 689
>gi|281209782|gb|EFA83950.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 152
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81
KN ++ L+ +D+ R + SM LK LGF+ + A++GKEAVD+F+ G +D++ +D MP
Sbjct: 23 KNFKI--LLAEDNEVNRKVVSMQLKKLGFQCDCAKDGKEAVDMFK-GGNYDLILMDLTMP 79
Query: 82 VMNGIEATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+G A+ +IRS K+ IV +T++ E +E G+D KPL ++++
Sbjct: 80 NTDGPTASLQIRSYEEIYRSKKVIIVALTAMVLEGSKEYCKSMGMDEFLQKPLKLERL 137
>gi|344924748|ref|ZP_08778209.1| sensory transduction histidine kinase [Candidatus Odyssella
thessalonicensis L13]
Length = 760
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV DD+ + + L LG ++ NGKEA+++ KFDIV +D +MP+M+G
Sbjct: 631 LRVLVADDNVVNQIVIKALLNKLGCQITTVSNGKEALEILNR-EKFDIVLMDGQMPIMDG 689
Query: 86 IEATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
+ ATR IR I + I+GVT+ + +RE F AG++ KP+++
Sbjct: 690 LTATRYIRESYDRIALPIIGVTASALKEDREEFFGAGINGYLEKPINM 737
>gi|385788866|ref|YP_005819975.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Erwinia sp. Ejp617]
gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Erwinia sp. Ejp617]
Length = 992
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N + LVVDD R + S L SLG++V+ A++G +A+++ + DIV D MP
Sbjct: 863 NDDILILVVDDHPINRMLLSDQLGSLGYRVKTAQDGIDALNVIGRN-EIDIVLTDVNMPN 921
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G T+ +R +G ++GVT+ E++ ++AG+D C +KP++++ +
Sbjct: 922 MDGYRLTQRLRELGQTFPVIGVTANALAEEKQRCIEAGMDNCLSKPVTMETL 973
>gi|448243134|ref|YP_007407187.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia marcescens WW4]
gi|445213498|gb|AGE19168.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia marcescens WW4]
Length = 934
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
+A N ++ LVVDD R + S L SLG++V A +G +A+ + + DIV D
Sbjct: 803 AADNGDIYLLVVDDHPINRRLLSDQLGSLGYQVVTANDGVDALAVLKQ-HHVDIVLTDVN 861
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
MP M+G T+ +R M ++GVT+ E++ ++AG+D C +KP++++ +
Sbjct: 862 MPNMDGYRLTQALREMQFSAPVIGVTANALAEEKQRCLEAGMDNCLSKPVTLETL 916
>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
Length = 832
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
G S +A + + AK + A L+VDD + + L G KV+ A+NG EA
Sbjct: 669 GLSGSDRSEAFVTRHTPAKKTQYNARILIVDDVTTNQVVLQSLLSKFGIKVDKAKNGLEA 728
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAEREAF 116
+ R+ A +D+V++D +MP M+G EATREIR ++ I +V +T+ + +RE
Sbjct: 729 LAALRTPANYDLVYMDCQMPEMDGYEATREIRNTRNININHSIPVVAMTANALQGDREKC 788
Query: 117 MQAGLDLCHTKPLS 130
++AG+D +KP++
Sbjct: 789 LEAGMDDYISKPIN 802
Score = 38.5 bits (88), Expect = 1.00, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
E+SSK++ ++ P+ + LVVDD+ + +VA +G+EA+ +
Sbjct: 528 ENSSKQS-VVYLPTGDLKKQRILVVDDNDTNCNLLEQIFTRWEIPYQVANSGEEALRVLA 586
Query: 67 SGAK----FDIVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAG 120
K F I +D +MP M+G+E ++I+ ++V +S+ + + +AG
Sbjct: 587 DNHKQQQFFTIAILDYQMPNMDGVELAKQIQDNPDYNDTRLVMFSSVVQRGDAKKMQKAG 646
Query: 121 LDLCHTKPLSVDKILPLMEDL 141
TKP+ +L ++E +
Sbjct: 647 FSGYLTKPMQQADLLSVLEKV 667
>gi|115491255|ref|XP_001210255.1| hypothetical protein ATEG_00169 [Aspergillus terreus NIH2624]
gi|114197115|gb|EAU38815.1| hypothetical protein ATEG_00169 [Aspergillus terreus NIH2624]
Length = 641
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 7 ESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR 66
ESSS P +K + L+V+D+ + I + L++LGF V A NG+EA+D FR
Sbjct: 495 ESSSSN---QTEPESKKV----LLVEDNIINQQIVARKLRALGFNVTPASNGREALDEFR 547
Query: 67 SGAKFDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLD 122
+FD + +D+ MPVM+G ATR IR M + ++GVT+ +R + AG+D
Sbjct: 548 K-KQFDCILMDQVMPVMDGNAATRAIRDMEKDTSKHVPVLGVTANVRSEQRTEMLDAGMD 606
Query: 123 LCHTKP 128
KP
Sbjct: 607 DVVQKP 612
>gi|336473238|gb|EGO61398.1| hypothetical protein NEUTE1DRAFT_77394 [Neurospora tetrasperma FGSC
2508]
gi|350293489|gb|EGZ74574.1| hypothetical protein NEUTE2DRAFT_82032 [Neurospora tetrasperma FGSC
2509]
Length = 1274
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALK-SLGFKVEVAENGKEAVDLFRSGA-- 69
AK ++ S+ +L LV DD+ + S LK + V +A++G+EA DL ++
Sbjct: 1018 AKQLQQSSSGPGKLRVLVADDNSTNVEVVSRLLKLEEVYDVTIAKDGQEAYDLVKANMEH 1077
Query: 70 --KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
+FD++F+D +MP ++G+++TR IR MG IV +T+ + E+ + M++G+D +K
Sbjct: 1078 NLQFDVIFMDIQMPNLDGLQSTRLIRQMGYSAPIVALTAFSEESNVKECMESGMDEFLSK 1137
Query: 128 PL 129
P+
Sbjct: 1138 PI 1139
>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
Length = 1055
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ EVAENG+ AV++F+ FDI+ +D MP+M+G EA
Sbjct: 937 LLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGFEA 996
Query: 89 TREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+R+IR S G+ K I+ +T+ + + + +G+D KP+ +K+L +E+
Sbjct: 997 SRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIEN 1053
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+AK L LVVDD+ + I + + GF ++A NG+EAVD+F+ ++ ++ +D
Sbjct: 766 PNAKTLPKI-LVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQN-QYCLILMDC 823
Query: 79 EMPVMNGIEATREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
MPVM+G EAT+ IR + +KI I+ +T+ + + + G+D KP
Sbjct: 824 MMPVMDGFEATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 880
>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
Length = 1059
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + S+ L G++ EVAENG+ AV++F+ FDI+ +D MP+M+G EA
Sbjct: 941 LLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGFEA 1000
Query: 89 TREIR----SMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+R+IR S G+ K I+ +T+ + + + +G+D KP+ +K+L +E+
Sbjct: 1001 SRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIEN 1057
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+AK L LVVDD+ + I + + GF ++A NG+EAVD+F+ ++ ++ +D
Sbjct: 770 PNAKTLPKI-LVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQN-QYCLILMDC 827
Query: 79 EMPVMNGIEATREIRSM------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
MPVM+G EAT+ IR + +KI I+ +T+ + + + G+D KP
Sbjct: 828 MMPVMDGFEATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPF 884
>gi|445499387|ref|ZP_21466242.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444789382|gb|ELX10930.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 1427
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS 67
+SS+ A +M + KN R+ L+V+D+ F + I L+ +G V +A NG EA++L R
Sbjct: 1149 ASSRSAAVM--AALKNARI--LLVEDNTFNQQIALEMLEEVGSSVCLAANGMEALELLRQ 1204
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRS-MGI-KIKIVGVTSLNSEAEREAFMQAGLDLCH 125
A FD V +D +MP+M+G+E TR IR+ G+ ++++ +T+ + +R ++AG+D
Sbjct: 1205 TA-FDCVLMDVQMPLMDGLETTRRIRADPGLADLRVLAMTATATNEDRVRCIEAGMDDFI 1263
Query: 126 TKPL 129
+KP+
Sbjct: 1264 SKPI 1267
>gi|325262477|ref|ZP_08129214.1| sensory box sensor histidine kinase/response regulator [Clostridium
sp. D5]
gi|324032309|gb|EGB93587.1| sensory box sensor histidine kinase/response regulator [Clostridium
sp. D5]
Length = 1209
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
Query: 10 SKKAKIMENPSAKNL---RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD--- 63
S++ K+ N +N L LVVDDD + + LK +G K E ++G++AVD
Sbjct: 908 SEEEKLRHNQRKQNYNFSHLKTLVVDDDVAVCEGAVVTLKEMGIKAEWVDSGRKAVDRVE 967
Query: 64 -LFRSGAKFDIVFIDKEMPVMNGIEATREI-RSMGIKIKIVGVTSLNSEA-EREAFMQAG 120
L+ +G +D++ ID +MP M+GIE REI R +G ++ I+ +T+ + A E EA + AG
Sbjct: 968 MLWATGRYYDMILIDWKMPGMDGIETAREIRRRVGPEVTIIIMTAYDWIAIEHEAKL-AG 1026
Query: 121 LDLCHTKPL 129
++L +KP+
Sbjct: 1027 VNLLMSKPM 1035
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
LG E +K+A++++ L+V+D+ + M L+S F V+ AENG A+
Sbjct: 1048 LGRKEEEAKQAEVIDYDFTGRR---VLLVEDNAINTEVAVMLLESRNFTVDTAENGLRAL 1104
Query: 63 DLFRSGAK--FDIVFIDKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAF 116
+ F + +D + +D MP+M+G+ A IR + + I+ +T+ + + E
Sbjct: 1105 EKFSKSEEGDYDAILMDIRMPLMDGLTAAANIRHLSNSDARSVPIIAMTANAFDDDIEKS 1164
Query: 117 MQAGLDLCHTKPLSVDKILPLMEDLM 142
AG++ KP+ ++ ++ D +
Sbjct: 1165 KVAGMNAHLAKPIEPKRLYQVLYDFI 1190
>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 2020
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
+E A+ L L L+V+D + + L+ LG++ +VA NG+EA++ R + + +VF
Sbjct: 1744 LEAEFAQRLPLSILLVEDVAVNQKVARQMLQRLGYRADVANNGQEALESLRRKS-YQVVF 1802
Query: 76 IDKEMPVMNGIEATREIR---SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+D +MP M+G+EATR IR S + I+ +T+ + +RE +Q G++ +KP+
Sbjct: 1803 MDVQMPEMDGLEATRRIRAEWSSACQPWIIAMTAHAMQGDREQCLQVGMNDYISKPI 1859
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P + RL LVVDD+ R I ++ +S G +V A +G++A++ FD+ +D
Sbjct: 1604 PELRGKRL--LVVDDNATNRQIITLQAQSWGMEVTTAASGEQALNWLADSEPFDLAVLDW 1661
Query: 79 EMPVMNGIEATREIRSM 95
+MP M+G+ +I+++
Sbjct: 1662 QMPEMDGLTLALQIQAL 1678
>gi|374586169|ref|ZP_09659261.1| integral membrane sensor hybrid histidine kinase [Leptonema illini
DSM 21528]
gi|373875030|gb|EHQ07024.1| integral membrane sensor hybrid histidine kinase [Leptonema illini
DSM 21528]
Length = 686
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 20 SAKNLR--LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
S +N R L L+ +D ++ + L+S G VE+A NG+EAV + A FDI+F+D
Sbjct: 556 STENGRESLRVLLAEDSPDLQILIRHMLESTGCTVELASNGQEAV-IAAQAAPFDIIFMD 614
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+MPVM+G+ AT+E+R +G +V +T+ ER + AG++ +KP+
Sbjct: 615 VQMPVMDGLRATQELRRLGYAGPVVALTAHAMTEERNRCLAAGMNEHISKPV 666
>gi|390949067|ref|YP_006412826.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
gi|390425636|gb|AFL72701.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
Length = 690
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+ G +V +AENGK AVDLF A FD+V +D +MPVM+GIEA
Sbjct: 570 LLVEDNPINQKLARKLLERWGHEVTLAENGKIAVDLFEPSA-FDLVLMDMQMPVMDGIEA 628
Query: 89 TREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TR IR + IV +T+ ++R ++AG+D KPL
Sbjct: 629 TRRIRDKERGSARTPIVAMTANVMASDRARCLEAGMDEHLPKPL 672
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDIVFIDKEMPVM 83
ALVVDD R + L+ G A +G+EA+ L RSG FD++ +D MP M
Sbjct: 424 ALVVDDHPINRETLAGWLRHWGLTTLEAGSGQEALALARSGQSSRTPFDLLLLDARMPDM 483
Query: 84 NGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+G+E + + G+ + ++V ++ S + G+ TKP + +++ + L
Sbjct: 484 DGLELAARLVAEGLIAQGRMVMLSCGGSPGNAQRGQDLGIAATLTKPATPRELIETLTRL 543
Query: 142 M 142
+
Sbjct: 544 L 544
>gi|384136559|ref|YP_005519273.1| winged helix family two component transcriptional regulator
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339290644|gb|AEJ44754.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 236
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LVVDD+ IRT+ GF VE ++G+ A + + GA K+D+V +D +P M+G+E
Sbjct: 2 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGLE 61
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
R +R G+KI I+ +T+ + E + ++ G D TKP S
Sbjct: 62 VCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFS 104
>gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
Length = 1204
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL----FRSGAK-FDIVFIDKEMPVM 83
L+VDD+ R + + LK G + ++AE+G +A+++ + S AK +DI+F+D +MP M
Sbjct: 948 LLVDDNAVNRKVANEILKKSGCETDMAESGFKAIEMVEKRYHSDAKGYDIIFMDIQMPDM 1007
Query: 84 NGIEATREIR---SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+G+E T+E++ S G+ IV +T+ + + +R+ FM G+D KP+ ++ ++D
Sbjct: 1008 DGVETTQELKKRFSKGLP-PIVAMTAYSMKEDRDRFMSQGMDDYIAKPIRAQTLVQKVKD 1066
Query: 141 LMKN 144
LM N
Sbjct: 1067 LMGN 1070
>gi|334129301|ref|ZP_08503106.1| Putative Histidine kinase [Methyloversatilis universalis FAM5]
gi|333445527|gb|EGK73468.1| Putative Histidine kinase [Methyloversatilis universalis FAM5]
Length = 1338
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L+ G +V+VA +G++A+D+ ++FD V +D +MPVM+G A
Sbjct: 1004 LLVEDNELNQELAVDLLERAGIEVKVAGDGRQALDMLAGDSRFDAVLMDCQMPVMDGYTA 1063
Query: 89 TREIRSM-GIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TRE+R++ G++ + ++ +T+ E +RE G++ C KPL V ++
Sbjct: 1064 TRELRALPGLEALPVIAMTASVLETDRERMRACGMNDCIPKPLDVPQMF 1112
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD R + + + +G +VA + EA++ L GA++ ++ ID +MP M+G++
Sbjct: 860 LVVDDHAGAREVLATLCRGMGLDTDVAGSADEALERLEHDGARYGLLLIDWKMPGMDGVQ 919
Query: 88 ATREI 92
EI
Sbjct: 920 LAEEI 924
>gi|417305595|ref|ZP_12092549.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
WH47]
gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
WH47]
Length = 953
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 22 KNLRLFA--LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--FDIVFID 77
+ +RL A LVVDD IR + ++ G V A NG+EA+D + K D++ +D
Sbjct: 827 EEIRLSANILVVDDRRDIRYLAQHFIEKAGGTVVTATNGQEAIDTIFAEPKTEIDLIVMD 886
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
+MPV++G +AT E+R G ++ ++ +T+ +++R+ + AG TKPL K++ +
Sbjct: 887 MQMPVLDGYDATAELRRRGCELPVIALTANAMKSDRDECLAAGCTDYTTKPLDSQKLIAM 946
Query: 138 MEDLMKN 144
++ L+K+
Sbjct: 947 IDRLLKS 953
>gi|239908296|ref|YP_002955037.1| chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1]
gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
magneticus RS-1]
Length = 1516
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +DD R + L+ G + + ENG++A++ R G+ FD + +D +MPVM+G+ A
Sbjct: 1395 LLAEDDNVNRLVAQRMLEKAGCTITLVENGRQAIEALRVGS-FDAILMDVQMPVMDGVAA 1453
Query: 89 TREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
T IR+ +I I+ +T+ +RE F+ +G+D +KPL + +L +++
Sbjct: 1454 TTAIRNGEAGKEHTRIPIIAMTAYTMSGDREKFLASGMDGYISKPLEISNLLEVLK 1509
>gi|389578240|ref|ZP_10168267.1| signal transduction histidine kinase [Desulfobacter postgatei 2ac9]
gi|389399875|gb|EIM62097.1| signal transduction histidine kinase [Desulfobacter postgatei 2ac9]
Length = 808
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 24/155 (15%)
Query: 9 SSKKAKIMENPSAKNLRL----------FALVVDDDCFIRTIHSMALKSLGFKVEVAENG 58
SS+ IM NP + R LVV+D+ + + S LK+LG +V++A NG
Sbjct: 519 SSETDSIMPNPVVYDRRSEIEVLPEKAPLVLVVEDNTINQEVSSGILKNLGCRVDLAPNG 578
Query: 59 KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI------KIKIVGVTSLNSEAE 112
++A+ + + +DI+F+D +MPVM+G + TR IR+MG ++ ++ +T+ +
Sbjct: 579 EKALAAVKDKS-YDIIFMDCQMPVMDGYDTTRRIRAMGSISRSGGELPVIALTAHALAGD 637
Query: 113 REAFMQAGLDLCHTKPLS-------VDKILPLMED 140
R ++AG+D KP S + + LP +D
Sbjct: 638 RVKCIKAGMDDHLAKPFSKFQMATVLSRWLPEWQD 672
>gi|344940937|ref|ZP_08780225.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262129|gb|EGW22400.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 966
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + I L+ GF+V +A +G++AV R+ FD V +D EMP+M+G EA
Sbjct: 709 LLVEDNHINQQIAKETLEQEGFEVSIASDGRDAVQKIRT-CYFDAVLMDLEMPIMDGYEA 767
Query: 89 TREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
TR IRS + I+ +T+ RE + G++ TKP+ VD++L + DL+K
Sbjct: 768 TRIIRSEAQFSDLPIIAMTAHAMNDVREKCLHIGMNGYVTKPIDVDELLANLIDLIK 824
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK---FDIVFIDKEMPVMN 84
ALVVD D R + LKSL F+V G++A+ L + + +V +D +P M+
Sbjct: 555 ALVVDSDETSRNALCLHLKSLFFQVTSVSTGEQAIQLLENACAEDPYRLVLMDWNLPKMD 614
Query: 85 GIEATREIRS 94
GI R I++
Sbjct: 615 GISVARHIKN 624
>gi|409098115|ref|ZP_11218139.1| multi-sensor hybrid histidine kinase [Pedobacter agri PB92]
Length = 741
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Query: 17 ENPSAKNLRLFA----LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
E P ++ LF+ L+VDD+ R + S L G +V VA+ G A+D+ FD
Sbjct: 475 ETPLIQDEELFSGRRVLIVDDNEMNRLVASTILLRYGPQVMVADTGMIALDMLNDEV-FD 533
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
IV +D +MP ++G + TR +RS G ++ +T+ E ERE + AG+D TKP++ +
Sbjct: 534 IVLMDIQMPELDGYDTTRALRSRGYTGAVIALTASAIEGEREKCLAAGMDDYITKPINEE 593
Query: 133 KILPLMEDLMKNN 145
++ ++ +K++
Sbjct: 594 LLISTIDRWIKSS 606
>gi|85091348|ref|XP_958858.1| hypothetical protein NCU04615 [Neurospora crassa OR74A]
gi|21622508|emb|CAD37055.1| related to protein histidine kinase [Neurospora crassa]
gi|28920246|gb|EAA29622.1| hypothetical protein NCU04615 [Neurospora crassa OR74A]
Length = 1266
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALK-SLGFKVEVAENGKEAVDLFRSGA-- 69
AK ++ S+ +L LV DD+ + S LK + V +A++G+EA DL ++
Sbjct: 1010 AKQLQQSSSGPGKLRVLVADDNSTNVEVVSRLLKLEEVYDVTIAKDGQEAYDLVKANMEH 1069
Query: 70 --KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
+FD++F+D +MP ++G+++TR IR MG IV +T+ + E+ + M++G+D +K
Sbjct: 1070 NLQFDVIFMDIQMPNLDGLQSTRLIRQMGYSAPIVALTAFSEESNVKECMESGMDEFLSK 1129
Query: 128 PL 129
P+
Sbjct: 1130 PI 1131
>gi|410634398|ref|ZP_11345035.1| periplasmic sensor hybrid histidine kinase [Glaciecola arctica
BSs20135]
gi|410146254|dbj|GAC21902.1| periplasmic sensor hybrid histidine kinase [Glaciecola arctica
BSs20135]
Length = 571
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG--AKFDIVFIDKEMPV 82
+L L+V+D+ + + + L L +V+VA +G EA+ L R FD++ +D +MP
Sbjct: 445 KLRVLLVEDNFINQEVMTAILNDLEIEVDVANDGLEALSLLRHSQPTTFDLILMDCQMPN 504
Query: 83 MNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPL 137
M+G EATR IR+ + KI I+ +T+ +ERE ++AG++ TKP++ D + L
Sbjct: 505 MDGYEATRRIRAGDAGDLFSKIPIIALTANTMNSEREKCLEAGMNEYLTKPINTDALKSL 564
Query: 138 M 138
+
Sbjct: 565 L 565
>gi|400537730|ref|ZP_10801252.1| two component response transcriptional regulator MprA
[Mycobacterium colombiense CECT 3035]
gi|400328774|gb|EJO86285.1| two component response transcriptional regulator MprA
[Mycobacterium colombiense CECT 3035]
Length = 229
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA++L S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|407701218|ref|YP_006826005.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250365|gb|AFT79550.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'Black Sea 11']
Length = 888
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + L +LG ++AE+GK+AV + ++D++ +D +MPVM+G EA
Sbjct: 772 LLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQKVENAPQYDLILMDVQMPVMDGYEA 831
Query: 89 TREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+++R G + I+G+++ + ++++ + AG++ TKP+ ++ ++ + +
Sbjct: 832 TKQLREKGFTGVPIIGLSANAMKEDKQSAIDAGMNDYLTKPIKQKSLISMLREYL 886
>gi|258512529|ref|YP_003185963.1| winged helix family two component transcriptional regulator
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 239
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LVVDD+ IRT+ GF VE ++G+ A + + GA K+D+V +D +P M+G+E
Sbjct: 5 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGLE 64
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
R +R G+KI I+ +T+ + E + ++ G D TKP S
Sbjct: 65 VCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFS 107
>gi|253699183|ref|YP_003020372.1| response regulator receiver protein [Geobacter sp. M21]
gi|251774033|gb|ACT16614.1| response regulator receiver protein [Geobacter sp. M21]
Length = 125
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +DD IR + + L GF +NG++AV+ + + FD +F+D +MPVM+G A
Sbjct: 4 LIAEDDPTIRQMMATLLSRCGFDCRSVDNGRKAVEAWEDES-FDFIFMDVQMPVMDGFTA 62
Query: 89 TREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
TR IR G I+ +T+ E +R+ + +G+D +KP+ +D++ L+++
Sbjct: 63 TRIIREKEALKGGHTSIIALTAHAMEQDRQQCLDSGMDDYLSKPIDLDELFSLLKN 118
>gi|425781015|gb|EKV18997.1| Sensor histidine kinase/response regulator, putative [Penicillium
digitatum PHI26]
gi|425783278|gb|EKV21135.1| Sensor histidine kinase/response regulator, putative [Penicillium
digitatum Pd1]
Length = 1255
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 13/132 (9%)
Query: 20 SAKNLRLF-ALVVDDDCFIRTIHSMALKSLGF-KVEVAENGK---EAVDLFRSGAKFDIV 74
+ K+ RL LVVDD+ + LK +++ AENGK EAV+ +SG +DI+
Sbjct: 1112 TTKSRRLTRVLVVDDNRINLNLMMTFLKKRQLTELDPAENGKLAVEAVERMQSG--YDII 1169
Query: 75 FIDKEMPVMNGIEATREIRSMGIKIK------IVGVTSLNSEAEREAFMQAGLDLCHTKP 128
F+D MPVMNG EATR IRS+ I I+ +T L+S + + +G+DL TKP
Sbjct: 1170 FMDMSMPVMNGFEATRAIRSLERDIDGRTPAIIIALTGLSSSRDESDAIASGVDLFLTKP 1229
Query: 129 LSVDKILPLMED 140
+S ++ L+++
Sbjct: 1230 VSFREVARLLDE 1241
>gi|407067989|ref|ZP_11098827.1| sensor protein [Vibrio cyclitrophicus ZF14]
Length = 880
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 7/130 (5%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E A N R+ L+V+D+ + I S L+ G++ +A NG+EAVD+ GA+FD + +
Sbjct: 750 EEVRALNRRI--LIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVITQGAQFDAILM 807
Query: 77 DKEMPVMNGIEATREIR-----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
D MPVM+GI ATR IR I + I+ +T+ E + + +AG++ KP
Sbjct: 808 DCMMPVMDGITATRAIRQWELDQQAIPLPIIALTASVLEEDIKDCFEAGMNAYLPKPYKS 867
Query: 132 DKILPLMEDL 141
++ L L
Sbjct: 868 HQLYDLFSSL 877
>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
Length = 239
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LVVDD+ IRT+ GF VE ++G+ A + + GA K+D+V +D +P M+G+E
Sbjct: 5 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGLE 64
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
R +R G+KI I+ +T+ + E + ++ G D TKP S
Sbjct: 65 VCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFS 107
>gi|428305762|ref|YP_007142587.1| response regulator receiver protein [Crinalium epipsammum PCC 9333]
gi|428247297|gb|AFZ13077.1| response regulator receiver protein [Crinalium epipsammum PCC 9333]
Length = 143
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
NL L L+ +D+ + + S LK LG K ++A NG E +D R ++D+V +D +MP
Sbjct: 6 NLSLKILLAEDNVINQKVASQMLKQLGLKADLATNGLEVLDALRH-QQYDVVLMDVQMPE 64
Query: 83 MNGIEATREIRSMGIK---IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
M+GIEATR+IR + I+ VT+ RE + G++ +KPL+ D LME
Sbjct: 65 MDGIEATRQIRQEWNQENSPWIIAVTANTIGGVREECLNVGMNDFISKPLNKDV---LME 121
Query: 140 DLMK 143
L K
Sbjct: 122 ALSK 125
>gi|406029299|ref|YP_006728190.1| response regulator mprA [Mycobacterium indicus pranii MTCC 9506]
gi|405127846|gb|AFS13101.1| Response regulator mprA [Mycobacterium indicus pranii MTCC 9506]
Length = 228
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA++L S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|440715241|ref|ZP_20895788.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SWK14]
gi|436439585|gb|ELP32999.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SWK14]
Length = 993
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 20 SAKNLRLFA---LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFD 72
S++ LRL A LVVDD R + + LK G V AENG+EA+++ SG ++
Sbjct: 573 SSELLRLPAKRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALNMIAEGNESGYPYE 632
Query: 73 IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+V +D +MPV++G ATR +R ++ +T +RE M AG D TKP+++D
Sbjct: 633 LVLMDMQMPVLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLD 692
Query: 133 KILPLMEDLM 142
++L ++ +
Sbjct: 693 ELLEMVSQYL 702
>gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
Length = 823
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 12 KAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFR----S 67
+A++ E P L L+ +D + + + L+ G + +AE+G A+ L+ +
Sbjct: 684 EARVREKP------LGILLAEDGVDNQKLIGLILRKAGHDLTIAEHGGVAIALYERAIAA 737
Query: 68 GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127
G D++ +D +MP ++G EATR +RSMG +I IV +T+ +RE +QAG TK
Sbjct: 738 GQNIDMILMDMQMPFVDGYEATRRLRSMGCQIPIVALTAHAMVGDREKCLQAGCTEYMTK 797
Query: 128 PLSVDKILPLMEDL 141
P+ +L L+++L
Sbjct: 798 PIDRHALLQLIDEL 811
>gi|410614052|ref|ZP_11325103.1| ATPase-like response regulator receiver, ATP-binding region
[Glaciecola psychrophila 170]
gi|410166323|dbj|GAC38992.1| ATPase-like response regulator receiver, ATP-binding region
[Glaciecola psychrophila 170]
Length = 899
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 11 KKAKIMENPSAKNLRLFA------LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
K++K++++PS N+ A L+V+D+ + + LK LG +VAENG++AV
Sbjct: 756 KESKVIQSPSIANIHEIAAYEGHVLLVEDNTINQMVAGEMLKLLGVTFDVAENGQQAVTK 815
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDL 123
+ ++D+VF+D +MP+M+G EATR +R G + I G+++ + + +AG+D
Sbjct: 816 IVNSPQYDLVFMDIQMPIMDGYEATRMLRQKGHNNLIICGLSANAMKQDYSKAKEAGMDD 875
Query: 124 CHTKPL 129
KPL
Sbjct: 876 YIVKPL 881
>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 1131
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 29 LVVDDDCFIRTIHSMA--LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+VDDD +R + S++ L+ V A +G+EA+D S ++ D+V +D MPVM+G
Sbjct: 1014 LLVDDD--MRNVFSISTLLEENKLTVITASDGQEAIDTLISQSQIDLVLMDIMMPVMDGY 1071
Query: 87 EATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
EATR+IR+ K+ I+ +T+ +RE ++AG TKPL V+++L +M M
Sbjct: 1072 EATRKIRAENRFAKLPIIALTAKAMPGDREKCLEAGASDYITKPLDVNQLLSVMHTWM 1129
>gi|436840347|ref|YP_007324725.1| Response regulator receiver protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432169253|emb|CCO22621.1| Response regulator receiver protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 529
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 4/134 (2%)
Query: 3 LGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV 62
+G E+ + A++ E+ S + R AL VDD + ++ L S G++ VAENG+EA
Sbjct: 389 IGGDEAQADIARLPEHVSGEGKR--ALAVDDSKSMLALYRSILTSAGYEPVVAENGQEAY 446
Query: 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIR-SMGIK-IKIVGVTSLNSEAEREAFMQAG 120
+L +G +FD++ D MPVM+G+E ++R + G + + ++ VT+ + +++E + G
Sbjct: 447 ELVENGDEFDVIITDMNMPVMDGMEFVSKLRQTAGFEDLPVIMVTTESEGSQKELAQKTG 506
Query: 121 LDLCHTKPLSVDKI 134
+ TKP + D++
Sbjct: 507 VTDFITKPFTADQL 520
>gi|419829992|ref|ZP_14353478.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
gi|419833569|ref|ZP_14357029.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
gi|422917400|ref|ZP_16951722.1| his Kinase A domain protein [Vibrio cholerae HC-02A1]
gi|423821388|ref|ZP_17716325.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
gi|423881915|ref|ZP_17723719.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
gi|423997811|ref|ZP_17741066.1| his Kinase A domain protein [Vibrio cholerae HC-02C1]
gi|424016704|ref|ZP_17756537.1| his Kinase A domain protein [Vibrio cholerae HC-55B2]
gi|424019632|ref|ZP_17759421.1| his Kinase A domain protein [Vibrio cholerae HC-59B1]
gi|424625004|ref|ZP_18063472.1| his Kinase A domain protein [Vibrio cholerae HC-50A1]
gi|424629497|ref|ZP_18067789.1| his Kinase A domain protein [Vibrio cholerae HC-51A1]
gi|424633537|ref|ZP_18071643.1| his Kinase A domain protein [Vibrio cholerae HC-52A1]
gi|424639252|ref|ZP_18077151.1| his Kinase A domain protein [Vibrio cholerae HC-56A1]
gi|424648601|ref|ZP_18086267.1| his Kinase A domain protein [Vibrio cholerae HC-57A1]
gi|443527500|ref|ZP_21093556.1| his Kinase A domain protein [Vibrio cholerae HC-78A1]
gi|341637755|gb|EGS62426.1| his Kinase A domain protein [Vibrio cholerae HC-02A1]
gi|408013564|gb|EKG51277.1| his Kinase A domain protein [Vibrio cholerae HC-50A1]
gi|408019075|gb|EKG56493.1| his Kinase A domain protein [Vibrio cholerae HC-52A1]
gi|408027511|gb|EKG64482.1| his Kinase A domain protein [Vibrio cholerae HC-56A1]
gi|408033794|gb|EKG70317.1| his Kinase A domain protein [Vibrio cholerae HC-57A1]
gi|408056389|gb|EKG91277.1| his Kinase A domain protein [Vibrio cholerae HC-51A1]
gi|408621577|gb|EKK94580.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
gi|408635340|gb|EKL07553.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
gi|408641812|gb|EKL13579.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
gi|408650172|gb|EKL21465.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
gi|408853118|gb|EKL92927.1| his Kinase A domain protein [Vibrio cholerae HC-02C1]
gi|408860441|gb|EKM00075.1| his Kinase A domain protein [Vibrio cholerae HC-55B2]
gi|408867934|gb|EKM07285.1| his Kinase A domain protein [Vibrio cholerae HC-59B1]
gi|443454154|gb|ELT17965.1| his Kinase A domain protein [Vibrio cholerae HC-78A1]
Length = 570
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 67/114 (58%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|417624118|ref|ZP_12274417.1| sensor kinase protein rcsC [Escherichia coli STEC_H.1.8]
gi|345377079|gb|EGX09011.1| sensor kinase protein rcsC [Escherichia coli STEC_H.1.8]
Length = 949
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAE-REAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ N+ AE ++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTA-NALAEVKQRCLESGMDSCLSKPVTLDVI 932
>gi|347733385|ref|ZP_08866445.1| sensory box protein [Desulfovibrio sp. A2]
gi|347517841|gb|EGY25026.1| sensory box protein [Desulfovibrio sp. A2]
Length = 1103
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P+ L L+V+DD + L+ G V +A +G++A+D R AKFD V +D
Sbjct: 968 PAETPTELHVLLVEDDAVNQLAVQRMLEKSGMTVTLATDGQQALDALRR-AKFDCVVMDV 1026
Query: 79 EMPVMNGIEATREIRS-----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
+MPVM+G+ ATR IR+ I +V +T+ +RE F++AG+D +KP+ +
Sbjct: 1027 QMPVMDGLAATRAIRTDPAFAARAAIPVVAMTAHAMVGDRETFLEAGMDDYVSKPVEM 1084
>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
Length = 921
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R + LK +++++A+NG EAV+ F+S +D+V +D +MP MNG +A
Sbjct: 804 LIVEDNPDNRFLIKAFLKKKNYQLDIAKNGIEAVEKFKSKL-YDLVLMDIQMPEMNGYQA 862
Query: 89 TREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
EIR IK +V +T+ ++++E ++ G D TKPL DK+ L+
Sbjct: 863 VNEIRKWEKENKKIKTPVVALTAYALDSDKEKALKEGFDDHLTKPLKKDKLYQLI 917
>gi|424636619|ref|ZP_18074630.1| his Kinase A domain protein [Vibrio cholerae HC-55A1]
gi|408024929|gb|EKG62009.1| his Kinase A domain protein [Vibrio cholerae HC-55A1]
Length = 572
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 67/114 (58%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 457 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAA 516
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 517 TKILRDKHIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
>gi|163793337|ref|ZP_02187312.1| Multi-sensor Hybrid Histidine Kinase [alpha proteobacterium BAL199]
gi|159181139|gb|EDP65654.1| Multi-sensor Hybrid Histidine Kinase [alpha proteobacterium BAL199]
Length = 878
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 3 LGEGES-SSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
L EG+ +S ++K + PS L L+ DD R I + L G V+ +G
Sbjct: 589 LEEGDRLASVESKTGQIPSRP---LVILLADDVPLNRDIIAQYLTEEGHTVDTVGDGVAC 645
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI---KIKIVGVTSLNSEAEREAFMQ 118
++ RSG ++D V +D MPV++G+EATR IR+ +I I+G+T+ +R+A+
Sbjct: 646 LERLRSGTQYDAVLMDVNMPVLDGVEATRWIRAEATTWSQIPIIGLTADAFTEQRDAYRM 705
Query: 119 AGLDLCHTKPLSVDKIL 135
AG+ C KP+ D++L
Sbjct: 706 AGMTDCLPKPIEWDQLL 722
>gi|372222537|ref|ZP_09500958.1| ATP-binding region, ATPase-like protein, partial [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 204
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 22 KNLRLFALVVDDD----CFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
+NL + ++V +D +I + F V A NG+EAV+LF D + +D
Sbjct: 76 ENLPTYKVLVAEDEQVNFYILNTFLQRIPEANFNVVRATNGEEAVNLFDGHPDLDFILMD 135
Query: 78 KEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
+MP+M+G+EA IR+ G K+ I+ ++ +EA+REA QAG + TKPL
Sbjct: 136 IKMPIMDGLEAIAAIRAKGAKLPIIVQSAFATEADREAAEQAGSNGFLTKPL 187
>gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 979
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 4 GEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63
G+ E+S ++ ++++ +LR+ L+VDD+ F + + L+ +G VA NG EA+
Sbjct: 832 GDKEASDERVRLLDQ-KLNDLRV--LLVDDNLFNQEVACAILEDVGAVTAVAFNGLEALQ 888
Query: 64 -LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAG 120
L + +D+V +D MPVM+G+EA+R IRSM + I+ +T+ + +REA + AG
Sbjct: 889 RLEEAKDPYDVVLMDMAMPVMDGLEASRRIRSMEKYRDLPIIAMTANAMKGDREACLAAG 948
Query: 121 LDLCHTKPLSVDKILPLM 138
+ KP+ + + ++
Sbjct: 949 MSDHLAKPIDITEFYAVL 966
>gi|228477889|ref|ZP_04062503.1| Two-component response transcriptional regulator [Streptococcus
salivarius SK126]
gi|228250379|gb|EEK09619.1| Two-component response transcriptional regulator [Streptococcus
salivarius SK126]
Length = 225
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + ++ AL+ G++V+ A NG+EAVDL A + ++ +D MP+ GIEA
Sbjct: 6 LLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNA-YQVMIMDIMMPIKTGIEA 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+EIRS G + ++ +T+++ +R + AG D TKP+S+ ++L + L
Sbjct: 65 LKEIRSSGDRTHVIMLTAMSEIDDRVTGLDAGADDYLTKPISLKELLARLRSL 117
>gi|39996771|ref|NP_952722.1| response receiver-modulated diguanylate cyclase [Geobacter
sulfurreducens PCA]
gi|409912191|ref|YP_006890656.1| response receiver-modulated diguanylate cyclase [Geobacter
sulfurreducens KN400]
gi|39983659|gb|AAR35049.1| response receiver-modulated diguanylate cyclase [Geobacter
sulfurreducens PCA]
gi|298505784|gb|ADI84507.1| response receiver-modulated diguanylate cyclase [Geobacter
sulfurreducens KN400]
Length = 322
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ +RT+ +LKS G+ V +AENGKEA+++F G + IV D MP M+G+E
Sbjct: 19 LIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFNKG-YYPIVMTDWVMPEMDGLEL 77
Query: 89 TREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
R IR+ G I+ +TS +S+ + A ++AG D KP
Sbjct: 78 CRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKP 119
>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare ATCC 13950]
gi|379745686|ref|YP_005336507.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare ATCC 13950]
gi|379752977|ref|YP_005341649.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare MOTT-02]
gi|379760412|ref|YP_005346809.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare MOTT-64]
gi|387874359|ref|YP_006304663.1| two component response transcriptional regulatory protein MprA
[Mycobacterium sp. MOTT36Y]
gi|443304303|ref|ZP_21034091.1| two component response transcriptional regulatory protein MprA
[Mycobacterium sp. H4Y]
gi|378798050|gb|AFC42186.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare ATCC 13950]
gi|378803193|gb|AFC47328.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare MOTT-02]
gi|378808354|gb|AFC52488.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare MOTT-64]
gi|386787817|gb|AFJ33936.1| two component response transcriptional regulatory protein MprA
[Mycobacterium sp. MOTT36Y]
gi|442765867|gb|ELR83861.1| two component response transcriptional regulatory protein MprA
[Mycobacterium sp. H4Y]
Length = 228
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA++L S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>gi|443242509|ref|YP_007375734.1| sensor protein [Nonlabens dokdonensis DSW-6]
gi|442799908|gb|AGC75713.1| sensor protein [Nonlabens dokdonensis DSW-6]
Length = 782
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + I L+S F EVA NG EAV+ ++ AK+D++ +D MP+M+G EA
Sbjct: 664 LVVEDNKINQMITRKILESKNFSCEVANNGLEAVEAVKT-AKYDLILMDIHMPIMDGKEA 722
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
T++IRS +I I+ +T++ + F + G D KP +++ ++ N
Sbjct: 723 TKKIRSFDPEIPIIALTAVTLSESEKDFYEIGFDDIIPKPFKIEEFFEKIQKAFTN 778
>gi|242812549|ref|XP_002485980.1| sensor histidine kinase/response regulator, putative [Talaromyces
stipitatus ATCC 10500]
gi|218714319|gb|EED13742.1| sensor histidine kinase/response regulator, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1268
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 29 LVVDDDCF-IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGI 86
LVVDD+ +R + + + ++ AENGK AVD ++ +DI+F+D MPVMNG
Sbjct: 1141 LVVDDNHINLRLLLTYLSRRNIANLDSAENGKMAVDAVEKRSEGYDIIFMDISMPVMNGF 1200
Query: 87 EATREIRSMGIK------IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
EATR IRS+ + I+ +T L+S + M +G+DL TKP+S+ ++ L+++
Sbjct: 1201 EATRAIRSLENERDEKRPATIIALTGLSSARDETEAMTSGVDLFLTKPVSLKEVSRLLDE 1260
>gi|389684641|ref|ZP_10175969.1| sensor histidine kinase/response regulator [Pseudomonas
chlororaphis O6]
gi|388551864|gb|EIM15129.1| sensor histidine kinase/response regulator [Pseudomonas
chlororaphis O6]
Length = 1071
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ L L LV +D+ + I L++LG V A NG+EA+ L++ FD+V D M
Sbjct: 835 SSRLGLHILVAEDNAINQAIIKEQLEALGCTVTAASNGEEALQLWQPQV-FDLVLTDVNM 893
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
P++NG E TR +R +I IVGVT+ E M G++ KPLS+ + + +
Sbjct: 894 PLLNGYELTRALRERDREIPIVGVTANALREEGARCMAVGMNAWLVKPLSLQTLHHYLSN 953
Query: 141 LMKN 144
L N
Sbjct: 954 LCAN 957
>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 869
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +DD + L+ G+ V +A NG+EA+DL FD V +D +MPVM GIEA
Sbjct: 744 LLAEDDEVTQFAVRKLLEKAGYTVSIARNGEEALDLL-GAHDFDAVLMDIQMPVMGGIEA 802
Query: 89 TREIRSMGI-----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
TR IRS I I+ +T+ +RE F+ AG++ KP+ V ++ +E K
Sbjct: 803 TRLIRSSATPEAKRSIPIIALTAYAMAGDREKFLDAGMNDYIAKPVQVVELKKALERAQK 862
>gi|317028064|ref|XP_001400490.2| two-component sensor protein histidine protein kinase (dhkk, dhkj)
[Aspergillus niger CBS 513.88]
Length = 1266
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 23/132 (17%)
Query: 25 RLFALVVDDDC--------FIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVF 75
R LVVDD+ F++ H AL S AENGK AVD R+ +DI+F
Sbjct: 1117 RARVLVVDDNSINLNLMLTFMKKRHLAALDS-------AENGKLAVDAVERAQQGYDIIF 1169
Query: 76 IDKEMPVMNGIEATREIRSM----GIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+D MPVMNG EATR IR++ G K I+ +T L+S + + +G++L TKP
Sbjct: 1170 MDMSMPVMNGFEATRAIRALEKERGATYKPAVIIALTGLSSSRDESEALTSGVNLFLTKP 1229
Query: 129 LSVDKILPLMED 140
+S ++ L+ +
Sbjct: 1230 VSFKEVSRLLTE 1241
>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica
KT99]
gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica
KT99]
Length = 1235
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ + + + LKS G++V+VA+NG+ A+D+ + FD V +D +MPVM+G+ A
Sbjct: 1114 LLVEDNVINQQVATELLKSAGYEVDVADNGQIAIDML-AEKDFDAVLMDIQMPVMDGLTA 1172
Query: 89 TREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TREIR ++ I+ +T+ +RE + AG++ TKP+ + ++
Sbjct: 1173 TREIRKHFSLHELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLSELF 1221
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L ALVVDD+ I+S ++ F+V+ A NG EA+ + D++ +D MP M+G
Sbjct: 967 LKALVVDDNPTALQIYSTVMRDFHFEVDTAANGSEALYKLEK-SSVDLLLLDWMMPEMDG 1025
Query: 86 IEATREIRSM 95
I+ E+ M
Sbjct: 1026 IQVIDELDRM 1035
>gi|134057434|emb|CAK47772.1| unnamed protein product [Aspergillus niger]
Length = 1233
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 23/132 (17%)
Query: 25 RLFALVVDDDC--------FIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVF 75
R LVVDD+ F++ H AL S AENGK AVD R+ +DI+F
Sbjct: 1084 RARVLVVDDNSINLNLMLTFMKKRHLAALDS-------AENGKLAVDAVERAQQGYDIIF 1136
Query: 76 IDKEMPVMNGIEATREIRSM----GIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+D MPVMNG EATR IR++ G K I+ +T L+S + + +G++L TKP
Sbjct: 1137 MDMSMPVMNGFEATRAIRALEKERGATYKPAVIIALTGLSSSRDESEALTSGVNLFLTKP 1196
Query: 129 LSVDKILPLMED 140
+S ++ L+ +
Sbjct: 1197 VSFKEVSRLLTE 1208
>gi|449454135|ref|XP_004144811.1| PREDICTED: histidine kinase CKI1-like [Cucumis sativus]
Length = 1038
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 16/123 (13%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA------------KFDIVFI 76
LV +D+ ++ + + L+ LG E+ ENGKEA++L +G +D + +
Sbjct: 907 LVAEDNLVLQKLARLNLERLGATTEICENGKEALELVCNGLGNQRKHGASNTLPYDYILM 966
Query: 77 DKEMPVMNGIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D EMP+M+G EATREIR + I I+ +T+ + E ++AG+D+ KPL +
Sbjct: 967 DCEMPIMDGYEATREIRKVERYYNTHIPIIALTAHTTGEEAGKTIEAGMDVHLGKPLRKE 1026
Query: 133 KIL 135
K+L
Sbjct: 1027 KLL 1029
>gi|429884870|ref|ZP_19366477.1| Signal transduction histidine kinase [Vibrio cholerae PS15]
gi|429228386|gb|EKY34308.1| Signal transduction histidine kinase [Vibrio cholerae PS15]
Length = 570
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 67/114 (58%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D + + + L LG+ V +AENG +AV+L FD+V +D MP+M+GI A
Sbjct: 455 LVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLERNHVFDLVLMDISMPIMDGIAA 514
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T+ +R I I I+ +T+ + ++++ + AG++ KP+ I+ +++ +
Sbjct: 515 TKILRDKHIDIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 568
>gi|434400874|ref|YP_007134878.1| response regulator receiver protein [Stanieria cyanosphaera PCC
7437]
gi|428271971|gb|AFZ37912.1| response regulator receiver protein [Stanieria cyanosphaera PCC
7437]
Length = 132
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 16 MENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVF 75
M S++++RL L+V+D R + + L+++G++ + NG+EA+ L ++D++
Sbjct: 1 MMTKSSQSVRL--LIVEDYPDNRELLMIMLQAIGYQPDWVSNGQEAIALLEE-QQYDVIL 57
Query: 76 IDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
+D +MP M+G EATR IR + I+G+T+ + +R+ + AG+D +KP+ +D
Sbjct: 58 MDCQMPEMDGYEATRVIRQREKSQRHTIIIGLTAHVMKGDRQKCLDAGMDDYLSKPIDLD 117
Query: 133 KILPLMEDLMKN 144
K++ ++++ ++
Sbjct: 118 KLIKILDNWLQT 129
>gi|433772783|ref|YP_007303250.1| signal transduction histidine kinase [Mesorhizobium australicum
WSM2073]
gi|433664798|gb|AGB43874.1| signal transduction histidine kinase [Mesorhizobium australicum
WSM2073]
Length = 779
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD 72
A + E+ +A N + L+ +D+ + + L LG +A NG+ AV+++RS
Sbjct: 638 AAVPESNAAPNSPIDILIAEDNDVNQMVFGQILNGLGLSYRIAGNGRTAVEMYRS-LHPR 696
Query: 73 IVFIDKEMPVMNGIEATREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+V +D MP MNG EATR IR S G I I+GVT+ + +R+ ++AG+D KP
Sbjct: 697 LVLMDVSMPEMNGYEATRAIRAIEASSGGHIPIIGVTAHALKGDRDKCIEAGMDDYLPKP 756
Query: 129 LSVDKI 134
+S D++
Sbjct: 757 VSPDRL 762
Score = 39.3 bits (90), Expect = 0.61, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF----RSGAKFDIVFIDKEMPVMN 84
LV+DD+ R I L+S F AE+G + + GA D + +D +MP MN
Sbjct: 480 LVIDDNPVNREILLEQLRSWSFDCAAAESGAVGLAFLDRACQLGASVDCIILDYQMPGMN 539
Query: 85 GIEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
G + R I S I +V +TS++ + + G+ TKP
Sbjct: 540 GADVARAIAADSRLSTIPVVILTSVDQVDFGKMIIDFGISAHLTKP 585
>gi|333891767|ref|YP_004465642.1| response regulator receiver ATP-binding protein [Alteromonas sp.
SN2]
gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein
[Alteromonas sp. SN2]
Length = 887
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
+KKA I+E+ S L L+V+D+ + + LK+LG ++AE+G +AV +
Sbjct: 755 TKKADIIEDIS---LEGHVLLVEDNNINQIVTGEMLKTLGITFDIAEDGNQAVRKIENAP 811
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+D+V +D +MPVM+G EAT+ +R G + I+G+++ + ++++ + G++ TKP
Sbjct: 812 HYDLVLMDVQMPVMDGYEATKALRKAGFTTLPIIGLSANAMKEDKQSAIDVGMNDYLTKP 871
Query: 129 LSVDKILPLMEDLMKN 144
+ ++ +++ M +
Sbjct: 872 IKRKALVDMLKRYMNH 887
>gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
Length = 670
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ + + L G + VAENG++AVD + FD++ +D +MPVMNG +A
Sbjct: 545 LVVEDNELNQYVILNMLARFGVETCVAENGRDAVDRYAEDQDFDVILMDVQMPVMNGYDA 604
Query: 89 TREIRSMGI----KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
TR IR G+ + I+ +T+ + E AG++ TKP+ V +++
Sbjct: 605 TRRIRESGLPRCRSVPILAMTAHAMRGDEERSFAAGMNAHLTKPIDVRELV 655
>gi|350635187|gb|EHA23549.1| hypothetical protein ASPNIDRAFT_174132 [Aspergillus niger ATCC 1015]
Length = 1261
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 23/132 (17%)
Query: 25 RLFALVVDDDC--------FIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVF 75
R LVVDD+ F++ H AL S AENGK AVD R+ +DI+F
Sbjct: 1112 RARVLVVDDNSINLNLMLTFMKKRHLAALDS-------AENGKLAVDAVERAQQGYDIIF 1164
Query: 76 IDKEMPVMNGIEATREIRSM----GIKIK---IVGVTSLNSEAEREAFMQAGLDLCHTKP 128
+D MPVMNG EATR IR++ G K I+ +T L+S + + +G++L TKP
Sbjct: 1165 MDMSMPVMNGFEATRAIRALEKERGATYKPAVIIALTGLSSSRDESEALTSGVNLFLTKP 1224
Query: 129 LSVDKILPLMED 140
+S ++ L+ +
Sbjct: 1225 VSFKEVSRLLTE 1236
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,959,689,208
Number of Sequences: 23463169
Number of extensions: 68209352
Number of successful extensions: 338571
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 20237
Number of HSP's successfully gapped in prelim test: 64627
Number of HSP's that attempted gapping in prelim test: 262835
Number of HSP's gapped (non-prelim): 89522
length of query: 145
length of database: 8,064,228,071
effective HSP length: 109
effective length of query: 36
effective length of database: 9,801,709,946
effective search space: 352861558056
effective search space used: 352861558056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)