BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048318
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 4 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 62
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 63 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 116
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 125 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 183
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 184 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 237
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 20/113 (17%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGA------------KFDIVF 75
LVVDD+ R + + LK +G +VE ++GKEA+ L G FD +F
Sbjct: 65 LVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIF 124
Query: 76 IDKEMPVMNGIEATREIR----SMGIKIKIVGVTSLN--SEAEREAFMQAGLD 122
+D +MP M+G EATREIR S G++ I+ V+ + SE RE +QAG+D
Sbjct: 125 MDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET-IQAGMD 176
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 6 GESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF 65
GE+++ +A++ LVVDD+ I + S++LK GF+V A NG +A+D
Sbjct: 17 GENTTPEARV-------------LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA 63
Query: 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125
R + D V +D P +G R +R+ GI + +T+ +S ++ A + G D
Sbjct: 64 RE-TRPDAVILDVXXPGXDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYV 122
Query: 126 TKPLSVDKILPLMEDLMK 143
TKP S+++++ + +++
Sbjct: 123 TKPFSLEEVVARLRVILR 140
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ IR + L+ G++++ AENG+EA+ F SG +D+V +D EMP ++G+E
Sbjct: 5 LVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-NYDLVILDIEMPGISGLEV 63
Query: 89 TREIRSMGIKIKIVGVTSLN 108
EIR KI+ +T+ +
Sbjct: 64 AGEIRKKKKDAKIILLTAYS 83
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ IR + L+ G++++ AENG+EA+ F SG +D+V +D E P ++G+E
Sbjct: 5 LVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-NYDLVILDIEXPGISGLEV 63
Query: 89 TREIRSMGIKIKIVGVTSLN 108
EIR KI+ +T+ +
Sbjct: 64 AGEIRKKKKDAKIILLTAYS 83
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD+ +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 5 LVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 63
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 64 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 108
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ I I L+ G++V A +G EAV++ + D++ +D +P +G+E
Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
RE+R + I+ +T+ +SE ++ ++ G D TKP S ++L
Sbjct: 65 CREVRK-KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELL 110
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + ++ G +V+ AE+ KEA D + + DI +D +P +G+
Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGLSL 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + I+ +T+ S ++ + AG D TKP ++++ + L + N
Sbjct: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRRN 119
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ I I L+ G++V A +G EAV++ + D++ +D +P +G+E
Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
RE+R + I+ +T+ +SE ++ ++ G D TKP S ++L
Sbjct: 65 CREVRK-KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELL 110
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD F+R + + G++V A NG+EAV+ ++ K DIV +D MP MNGI+
Sbjct: 6 LIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-LKPDIVTMDITMPEMNGID 64
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
A +EI + KI+ +++ +A ++AG KP +++
Sbjct: 65 AIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVV 112
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD F+R + + G++V A NG+EAV+ ++ K DIV +D MP MNGI+
Sbjct: 5 LIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-LKPDIVTMDITMPEMNGID 63
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
A +EI + KI+ +++ +A ++AG KP +++
Sbjct: 64 AIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVV 111
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD+ +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 5 LVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 63
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V +EA++E A QAG KP +
Sbjct: 64 LLKTIRADG-AMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFT 108
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 13 AKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKF 71
+ +ME KN+++ L+VDD +R I L+ LGF + A++G A+ + + G F
Sbjct: 2 SHMMEAILNKNMKI--LIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-DF 58
Query: 72 DIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFM---QAGLDLCHTKP 128
D V D MP M GI+ + IR+ ++K + V + +EA+RE + QAG++ KP
Sbjct: 59 DFVVTDWNMPGMQGIDLLKNIRA-DEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKP 117
Query: 129 LS 130
+
Sbjct: 118 FT 119
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + SEA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD+ +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWMMPNMDGLE 66
Query: 88 ATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+ IR+ G + ++ VT+L + A QAG KP +
Sbjct: 67 LLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFT 111
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFT 111
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L L+ +D+ R + + AL+ + V NG +A+ +++ +FD++ +D +MPVM+G
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDG 69
Query: 86 IEATREIRSM-----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+EA EIR+ + I+ +T+ + +R A LD +KPL+ +++
Sbjct: 70 LEAVSEIRNYERTHNTKRASIIAITADTIDDDRPG---AELDEYVSKPLNPNQL 120
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD+ +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + + A++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA+ E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEADAENIKALAQAGASGYVVKPFT 112
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFT 111
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWRMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD+ +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWRMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + + A++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D +MP M+G+E
Sbjct: 8 LVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWKMPNMDGLE 66
Query: 88 ATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+ IR+ G + ++ VT+ + A QAG KP +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ I T+ L+ G+ V A +G+EA+ + K D++ +D +P ++GIE
Sbjct: 7 LVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-EKPDLIVLDVMLPKLDGIEV 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+++R + I+ +T+ + E ++ ++ G D TKP S
Sbjct: 66 CKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFS 107
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I L LG++ V AE+G EA + + A ++ D MP MNG++
Sbjct: 9 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLD 68
Query: 88 ATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+++RS +I I+ +T+ +AE ++AG++ KP +
Sbjct: 69 LVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D +MP M+G+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + ++A++E A QAG KP +
Sbjct: 71 LLKTIRADG-AMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFT 115
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I L LG++ V AE+G EA + + A ++ D MP MNG++
Sbjct: 9 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLD 68
Query: 88 ATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+++RS +I I+ +T+ +AE ++AG++ KP +
Sbjct: 69 LVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT 113
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD+ +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWMMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + + A++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV D+ I SM +K LG +++A NG EA+ S + +D+V +D MPV++G++A
Sbjct: 13 LVEDNKINIMVAKSM-MKQLGHTMDIANNGVEAITAINSSS-YDLVLMDVCMPVLDGLKA 70
Query: 89 TREIRS 94
TR IRS
Sbjct: 71 TRLIRS 76
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D +MP M+G+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + ++A++E A QAG KP +
Sbjct: 71 LLKTIRADG-AMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFT 115
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D +MP M+G+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 88 ATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+ IR+ G + ++ VT+ + A QAG KP +
Sbjct: 71 LLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFT 115
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D +MP M+G+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + + A++E A QAG KP +
Sbjct: 71 LLKTIRADG-AMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 115
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRAX-XAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 10 LVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 68
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 69 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ I I + G++V A NG+EA++ F + + DI+ +D +P ++G+E
Sbjct: 5 LIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDGLEV 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+ IR + I+ +++ +SE ++ ++ G D TKP S
Sbjct: 64 AKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFS 104
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R VVDDD IR + AL G ENG E + S D++ D MP M+
Sbjct: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSDIRMPGMD 61
Query: 85 GIEATREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G+ ++I+ + ++ +T+ + +A A+ Q D KP +D+ + L+E
Sbjct: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R VVDDD IR + AL G ENG E + S D++ D MP M+
Sbjct: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSDIRMPGMD 61
Query: 85 GIEATREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G+ ++I+ + ++ +T+ + +A A+ Q D KP +D+ + L+E
Sbjct: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G F + D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIICDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADS-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R VVDDD IR + AL G ENG E + S D++ D MP M+
Sbjct: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSDIRMPGMD 61
Query: 85 GIEATREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G+ ++I+ + ++ +T+ + +A A+ Q D KP +D+ + L+E
Sbjct: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G F + D MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIISDWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRA-DSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G F + D MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADS-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 55 AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114
A+NG+EA+ L + DI +D EMPV G+E IRS ++ K+V VT+ E
Sbjct: 52 AKNGQEAIQLLEKES-VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFE 110
Query: 115 AFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
++AG+D K S+ ++ + +++
Sbjct: 111 RAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V MP M+G+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 67
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 68 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVV D +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 10 LVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 68
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 69 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 113
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISAWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVD +R I LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 7 LVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 65
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 66 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 110
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I L LG++ V AE+G EA + + A ++ MP MNG++
Sbjct: 9 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMPEMNGLD 68
Query: 88 ATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+++RS +I I+ +T+ +AE ++AG++ KP +
Sbjct: 69 LVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD +R I LK LGF VE AE+G +A++ ++G + V MP M+G+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ IR + L+ GF+ AE+ AV+ D++ + +P +GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLAWMLPGGSGIQF 64
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+ +R SM I +V +T+ E +R ++ G D C TKP S +++ ++ +M+
Sbjct: 65 IKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ I I + G++V A NG+EA++ F + + DI+ + +P ++G+E
Sbjct: 5 LIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILXLMLPEIDGLEV 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+ IR + I+ +++ +SE ++ ++ G D TKP S
Sbjct: 64 AKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFS 104
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R VVDDD IR + AL G ENG E + S D++ MP M+
Sbjct: 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSXIRMPGMD 61
Query: 85 GIEATREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKILPLME 139
G+ ++I+ + ++ +T+ + +A A+ Q D KP +D+ + L+E
Sbjct: 62 GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVMNGIE 87
L+V+D+ + + L+ GF+ V +G A+ F R+GA DIV +D +P M+G +
Sbjct: 8 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA--DIVLLDLMLPGMSGTD 65
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
+++R+ + ++ VT+ +SE ++ ++ G D TKP S +++ + +++
Sbjct: 66 VCKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N+R+ LVV+D+ + + + ALK F V+V +G+E FD+V +D +PV
Sbjct: 2 NVRV--LVVEDERDLADLITEALKKEXFTVDVCYDGEEGX-YXALNEPFDVVILDIXLPV 58
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+G E + R G+ ++ +T+L+ R + G D KP + +++ + L+
Sbjct: 59 HDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALI 118
Query: 143 K 143
+
Sbjct: 119 R 119
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+ +D+ IR + L+ G++ V A +G+EAV+L K D+V +D +MP +GI+
Sbjct: 17 LIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH-KPDLVIMDVKMPRRDGID 75
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
A EI S I IV +T+ + E AG KP S+ ++P +E
Sbjct: 76 AASEIASKRIA-PIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIE 126
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEI 111
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
+R LVVDDD + + ++ L+ GF V +G +A+ R + D+V +D +P
Sbjct: 3 TMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-LRPDLVLLDLMLPG 61
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
MNGI+ R +R+ + IV +T+ + +++G D KP
Sbjct: 62 MNGIDVCRVLRADS-GVPIVMLTAKTDTVDVVLGLESGADDYIMKP 106
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVD----LFRSGAKFDIVFIDKEMPVM 83
LVV+D+ + + L G + +E+A +G+EA D L G ++++F+D +MP +
Sbjct: 5 LVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKV 64
Query: 84 NGIEATREI-RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+G+ +T+ I R +G IV +T+ ++ + +++G++ +KP+ K+ ++ +
Sbjct: 65 DGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 123
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N+R+ LVV+D+ + + + ALK F V+V +G+E + FD+V +D +PV
Sbjct: 2 NVRV--LVVEDERDLADLITEALKKEMFTVDVCYDGEEGM-YMALNEPFDVVILDIMLPV 58
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+G E + +R G+ ++ +T+L+ R + G D KP + +++ + L+
Sbjct: 59 HDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118
Query: 143 K 143
+
Sbjct: 119 R 119
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLG-FKVEV-AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
++VDD +R + +K+L FKV A NG+EA+D + D++ +D EMPVM+G+
Sbjct: 17 MIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGM 76
Query: 87 EATREIR 93
E R +
Sbjct: 77 EFLRHAK 83
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ IR + L+ GF+ AE+ AV+ D++ + +P +GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLAWMLPGGSGIQF 64
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+ ++ SM I +V +T+ E +R ++ G D C TKP S +++ ++ +M+
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVD----LFRSGAKFDIVFIDKEMPVM 83
LVV+D+ + + L G + +E+A +G+EA D L G ++++F+D +MP +
Sbjct: 6 LVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKV 65
Query: 84 NGIEATREI-RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+G+ +T+ I R +G IV +T+ ++ + +++G++ +KP+ K+ ++ +
Sbjct: 66 DGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 124
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV++DD R + L G KVE AE GKEA L S F++V + +P +NG+E
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL-SEKHFNVVLLXLLLPDVNGLEI 62
Query: 89 TREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKI 134
+ I+ + +++ +T + + EA D TKP +++I
Sbjct: 63 LKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFL-TKPCMLEEI 108
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEI 111
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI-------LPLMEDL 141
+ ++ + I+++ +T+ + + G KP +D+I LPL +L
Sbjct: 66 AKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 7 LIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 9 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 67
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 68 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 113
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD +R I S LK G++V AENG+ A++ S D++ +D MPVM+G
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-SEFTPDLIVLDIMMPVMDGFT 63
Query: 88 ATREI--RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+++ + +I ++ +T+ E + + G KP S
Sbjct: 64 VLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFS 108
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V +D ++P M+GIE
Sbjct: 5 LIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 64 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 109
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD-----IVFIDKEMPVM 83
LVVDDD + LK ++VE+A NG F +G K I+ +D MP +
Sbjct: 10 LVVDDDQAMAAAIERVLKRDHWQVEIAHNG------FDAGIKLSTFEPAIMTLDLSMPKL 63
Query: 84 NGIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
+G++ R +R + + KI+ V+ L+ ++A + G D KP D +L + DL
Sbjct: 64 DGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTE-GADDYLEKPFDNDALLDRIHDL 122
Query: 142 M 142
+
Sbjct: 123 V 123
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ IR + L+ GF+ AE+ AV+ D++ +D +P +GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGSGIQF 64
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+ ++ SM I +V +T+ E +R ++ G D TKP S +++ ++ +M+
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ IR + L+ GF+ AE+ AV+ D++ +D +P +GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGSGIQF 64
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+ ++ SM I +V +T+ E +R ++ G D TKP S +++ ++ +M+
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 44 ALKSLGFKVEVAENGKEAVDLFRSGA--KFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101
L+ GF+V A +G EA RS + D + +D MPV++G+ +R+M + +
Sbjct: 26 GLRLSGFEVATAVDGAEA---LRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82
Query: 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
+++ +S +R A ++AG D KP + +++ ++ L++
Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 16 MENP----SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKF 71
M NP A+ + LV DD R + L+ G KV + NG E V + +
Sbjct: 1 MSNPFLRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKV-LCVNGAEQVLDAMAEEDY 59
Query: 72 DIVFIDKEMPVMNGIEATREIRSM---GIKIKIVGVTSLNSEAER-EAFMQAGLDLCHTK 127
D V +D MP MNG++ +++R M G++ V V S + E A QAG K
Sbjct: 60 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAK 119
Query: 128 PLSVDKILPLMEDL 141
P+ K+L + DL
Sbjct: 120 PVVAAKLLDTLADL 133
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R++ SLG +A +G +A++L G D++ D MP MNG++
Sbjct: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDIAMPRMNGLKL 69
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
IR+ G + ++ +++ + A+ ++ G++ KP+
Sbjct: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVV + ++ LK LGF VE AE+G +A++ ++G + V D MP M+G+E
Sbjct: 8 LVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
+ IR+ G + + V + +EA++E A QAG KP +
Sbjct: 67 LLKTIRADG-AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of
Chea3 In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLG-FKVEV-AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
++VDD +R + +K+L FKV A NG+EA+D + D++ ++ EMPVM+G+
Sbjct: 17 MIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLNIEMPVMDGM 76
Query: 87 EATREIR 93
E R +
Sbjct: 77 EFLRHAK 83
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L++DDD +R + L+ FKV A NG + + +F S + D+V D P ++G+E
Sbjct: 9 LIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-EQPDLVICDLRXPQIDGLEL 67
Query: 89 TREIRSMGIKIKIV-----GVTSLNSEAER 113
R IR + I+ GV S EA R
Sbjct: 68 IRRIRQTASETPIIVLSGAGVXSDAVEALR 97
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L++DDD +R + L+ FKV A NG + + +F S + D+V D P ++G+E
Sbjct: 9 LIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-EQPDLVICDLRXPQIDGLEL 67
Query: 89 TREIRSMGIKIKIV-----GVTSLNSEAER 113
R IR + I+ GV S EA R
Sbjct: 68 IRRIRQTASETPIIVLSGAGVMSDAVEALR 97
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA 111
V+ A NG+EAV+ ++ K DIV +D MP MNGI+A +EI + KI+ +++ +A
Sbjct: 8 VDDATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQA 66
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA 111
V+ A NG+EAV+ ++ K DIV +D MP MNGI+A +EI + KI+ +++ +A
Sbjct: 8 VDDATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQA 66
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ IR AL+ G +V AE + + L + K D++ +D +P +GIE
Sbjct: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGDGIEF 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
R++R + ++ +++ + E+++ A + AG D +KP + ++
Sbjct: 64 IRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGEL 108
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD IR + + G++ A NG +A+D+ + + D+V + ++P M+GIE
Sbjct: 7 LIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLXMKIPGMDGIEI 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
+ ++ + I+++ +T+ + + G KP +D+I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD +R I S LK G++V AENG+ A++ S D++ + MPVM+G
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-SEFTPDLIVLXIMMPVMDGFT 63
Query: 88 ATREI--RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
+++ + +I ++ +T+ E + + G KP S
Sbjct: 64 VLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFS 108
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 29 LVVDDDCFIRTI------HSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
LVVDD F+R + +K +GF + E ++A++L K D++ +D EMP
Sbjct: 29 LVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----KPDVITMDIEMPN 83
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAER---EAFMQAGLDLCHTKP 128
+NGIEA + I +++ V+SL E EA +D TKP
Sbjct: 84 LNGIEALKLIMKKA-PTRVIMVSSLTEEGAAITIEALRNGAVDFI-TKP 130
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 30 VVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
+VDDD +R L GF + A++G + +DL + G +V +D P +G +
Sbjct: 12 IVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFS-GVVLLDIXXPGXDGWDTI 70
Query: 90 REI--RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
R I S+ I IV +T+ N+ + +Q + TKP
Sbjct: 71 RAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPF 112
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
+V D++ ++ H + L++ G++ G A+ + R K D++ +D ++P ++G+E
Sbjct: 6 IVEDNELNMKLFHDL-LEAQGYETLQTREGLSALSIAREN-KPDLILMDIQLPEISGLEV 63
Query: 89 TREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
T+ ++ I +V VT+ + + E + G + +KP+SV L ++ L++
Sbjct: 64 TKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79
S + + L L+V+DD R S + + +V A +G+E LF A D++ D
Sbjct: 2 SLREVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAP-DVIITDIR 60
Query: 80 MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA---GLDLCHTKPLSVDKILP 136
P + G+E I++ G K ++ +++ + E + F++A G+ L KP+ ++
Sbjct: 61 XPKLGGLEXLDRIKAGGAKPYVIVISAFS---EXKYFIKAIELGVHLFLPKPIEPGRLXE 117
Query: 137 LMEDL 141
+ED
Sbjct: 118 TLEDF 122
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+ + IR + L+ GF+ AE+ AV+ D++ ++ +P +GI+
Sbjct: 6 LVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLEWMLPGGSGIQF 64
Query: 89 TREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144
+ ++ SM I +V +T+ E +R ++ G D TKP S +++ ++ +M+
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
VVDDD +R L+S GF+VE + ++ R + + +D MP M+GIE
Sbjct: 8 FVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE-HRRPEQHGCLVLDMRMPGMSGIEL 66
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
++ ++ I IV +T+ M+AG KP +L +E ++ N
Sbjct: 67 QEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LV++DD R + L G KVE AE GKEA L S F++V +D +P +NG+E
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL-SEKHFNVVLLDLLLPDVNGLEI 62
Query: 89 TREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKI 134
+ I+ + +++ +T + + EA D TKP +++I
Sbjct: 63 LKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFL-TKPCMLEEI 108
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKV-EVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGI 86
L+VDD F + S GF + + A +G+EAV +++ DIV + MP M+GI
Sbjct: 40 LIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGI 99
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
I +++ +++L E + + G KPL K+L
Sbjct: 100 TCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVL 148
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 29 LVVDDDCFIRTIHSMAL-KSLGFKV--EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
++VDD +R + + + G+ V E A+ G EA L+R DIV +D +P G
Sbjct: 9 MLVDDHPIVREGYRRLIERRPGYAVVAEAADAG-EAYRLYRETTP-DIVVMDLTLPGPGG 66
Query: 86 IEATREIRSM 95
IEATR IR
Sbjct: 67 IEATRHIRQW 76
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 29 LVVDDDCFIRTIHSMALKSL--GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
LV++D+ F R + ALK + G +E A +GKEAV + S DI D +M M+G+
Sbjct: 7 LVLEDEPFQRLVAVTALKKVVPGSILEAA-DGKEAVAILESCGHVDIAICDLQMSGMDGL 65
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQA----GLDLCH--TKPLSVDKILPLM 138
R S+ K+ V ++S R+A + GL+ KP S+++I L+
Sbjct: 66 AFLRH-ASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALL 122
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 16 MENPSAKNLRLFALVVDDDCFIR--TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDI 73
M NP + +R+ +V DD R + +++L V A++G A++L ++ D+
Sbjct: 8 MSNPQPEKVRV--VVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLP-DV 64
Query: 74 VFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120
+D MP M+G + +RS + +++ +++ + A +Q G
Sbjct: 65 ALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQG 111
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L LV+D++ R + L LG +V + +E + + K +VF+D MP +
Sbjct: 8 LKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK--VVFMDVCMPGVEN 65
Query: 86 IEATREIRSMGIKIK-----IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
+ I K + +V ++ ++ +E M GLD KP+S+D I ++ D
Sbjct: 66 YQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSD 125
Query: 141 LMK 143
L++
Sbjct: 126 LLE 128
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R ++ G+ V A +G E + S ++V +D +P NG+
Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-SEYDINLVIMDINLPGKNGLLL 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
RE+R + ++ +T ++E ++ ++ G D TKP +
Sbjct: 66 ARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFN 106
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 55 AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114
+NG +A+ L ++V +D EMP M G+E EIR + IK++ VT+ E
Sbjct: 35 TDNGLDAMKLIEE-YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFE 93
Query: 115 AFMQAGLDLCHTKPLSVDKIL 135
+ +D K S+++++
Sbjct: 94 KAVVNDVDAYVLKERSIEELV 114
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 49 GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN 108
G+ V V +G ++ ++ + D++ +D +P NG+ TR +R + I+ VT +
Sbjct: 26 GYTVSVTASGAGLREIXQNQS-VDLILLDINLPDENGLXLTRALRERS-TVGIILVTGRS 83
Query: 109 SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+R ++ G D TKPL + +++ +++L+
Sbjct: 84 DRIDRIVGLEXGADDYVTKPLELRELVVRVKNLL 117
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATRE 91
DD IR + + K + ++E +NG +A+ + AK+D++ +D +P+ NG E
Sbjct: 16 DDIALIRRV--LDRKDIHCQLEFVDNGAKALYQVQQ-AKYDLIILDIGLPIANGFEVXSA 72
Query: 92 IRSMG 96
+R G
Sbjct: 73 VRKPG 77
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD R + AL+ LGFK + A +G++ + + +V D MP M+G+
Sbjct: 10 LIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN-PHHLVISDFNMPKMDGLG 68
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQA---GLDLCHTKPLSVDKI 134
+ +R+ K L ++ +R +A G + KP +++K+
Sbjct: 69 LLQAVRA-NPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKM 117
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+V+D+ R ++ G+ V A +G E + S ++V D +P NG+
Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQIL-SEYDINLVIXDINLPGKNGLLL 65
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
RE+R + + +T ++E ++ ++ G D TKP +
Sbjct: 66 ARELREQA-NVALXFLTGRDNEVDKILGLEIGADDYITKPFN 106
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 45 LKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIV 102
L+ G++ E NG+EAV F S + D++ D MP M+G R ++ I ++
Sbjct: 27 LEETGYQTEHVRNGREAVR-FLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVI 85
Query: 103 GVTSLNSEAEREAFMQAGLDLCHTKP 128
+T L+ + ++ G D TKP
Sbjct: 86 LLTILSDPRDVVRSLECGADDFITKP 111
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 30 VVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
VVDDD I S L+ LG +V+ G+ D F +V +D +P +G E
Sbjct: 7 VVDDDKNILKKVSEKLQQLG-RVKTFLTGE---DFLNDEEAFHVVVLDVXLPDYSGYEIC 62
Query: 90 REIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
R I+ + ++ +T L+ + +AG D TKP + + +L
Sbjct: 63 RXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILL 108
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 20/107 (18%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVMNGIE 87
L+V+D F + L G+ VE+A G+ AV+ G D++ +D E+ M+G++
Sbjct: 9 LIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ 68
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
I+ + ++ +V +T+ HT+P V+KI
Sbjct: 69 TALAIQQIS-ELPVVFLTA------------------HTEPAVVEKI 96
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 30 VVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
VVDDD I S L+ LG +V+ G+ D F +V +D +P +G E
Sbjct: 7 VVDDDKNILKKVSEKLQQLG-RVKTFLTGE---DFLNDEEAFHVVVLDVXLPDYSGYEIC 62
Query: 90 REIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
R I+ + ++ +T L+ + +AG D TKP + + +L
Sbjct: 63 RXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILL 108
>pdb|2QVG|A Chain A, The Crystal Structure Of A Two-Component Response
Regulator From Legionella Pneumophila
Length = 143
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 32 DDDCFIRTIHSMALK-SLGFKVEVAENGKEAVDLFRSGAKFD-----IVFIDKEMPVMNG 85
DD+ I+++ + K S K+E+A++G +A+D K + ++ +D +P NG
Sbjct: 15 DDEVDIQSVERVFHKISSLIKIEIAKSGNQALDXLYGRNKENKIHPKLILLDINIPKXNG 74
Query: 86 IEATREIR--SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
IE +E+R S I++ +T+ + ++ AF + KPL + + L
Sbjct: 75 IEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLF 129
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
N ++ LVVDD R L+ +V A + +EA+ +V +D P
Sbjct: 122 NQQIEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYXPE 181
Query: 83 MNGIEATREIRSMGIK--IKIVGVT 105
++GI R +R K + I+G++
Sbjct: 182 IDGISLVRXLRERYSKQQLAIIGIS 206
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 29 LVVDDDCFIRT--IHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+V+D IR I ++A ++ G +++ + + A G ++ + +D +P
Sbjct: 8 LIVEDSXTIRRXLIQAIAQQT-GLEIDAFDTLEGARHC--QGDEYVVALVDLTLPDAPSG 64
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121
EA + + G+ + I+ T+ SE +REA+++AG+
Sbjct: 65 EAVKVLLERGLPVVIL--TADISEDKREAWLEAGV 97
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV 82
+LR L+V+D + ++ +K + + E G++A+ F +K ++ +D ++P
Sbjct: 2 SLRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQ-FIERSKPQLIILDLKLPD 60
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
M+G + I I ++ T+ S +Q G + KP++ D++
Sbjct: 61 MSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRL 112
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDDD + L S F+V E+G EA+ + F ++ +D P G E
Sbjct: 8 LLVDDDYSLLNTLKRNL-SFDFEVTTCESGPEALACIKKSDPFSVIXVDXRXPGXEGTEV 66
Query: 89 TREIR 93
++ R
Sbjct: 67 IQKAR 71
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIE 87
LV+DD+ I L+ G +V A + E + +F D+V D +MP ++G++
Sbjct: 7 LVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMD 66
Query: 88 ATREIRSMGIKIKIVGVT 105
REI+ + + ++ +T
Sbjct: 67 ILREIKKITPHMAVIILT 84
>pdb|2JK1|A Chain A, Crystal Structure Of The Wild-Type Hupr Receiver Domain
pdb|2VUI|B Chain B, Crystal Structure Of The Hupr Receiver Domain In
Inhibitory Phospho-State
Length = 139
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 29 LVVDDDCFIRTIHSMALKSLG----FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
L+VDD+ HS+A L F V A+ + A+ + ++ D+ MP
Sbjct: 5 LLVDDEP-----HSLAAMKLALEDDFDVLTAQGAEAAIAILEE-EWVQVIICDQRMPGRT 58
Query: 85 GIEATREIRSMG---IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G++ E+R ++I I G T +S + A AG+ TKP +++L
Sbjct: 59 GVDFLTEVRERWPETVRIIITGYT--DSASMMAAINDAGIHQFLTKPWHPEQLL 110
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAV----DLFRSGAKFDIVFIDKEMPVMN 84
L+VDDD I L+ G++VE+A E + + F + A F I D E +
Sbjct: 7 LIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDXEGTEL- 65
Query: 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAF-MQAGLDLCHTKPLSVDKIL 135
+E ++R KI + G SL E F + AG D KP++ +L
Sbjct: 66 -LEKAHKLRPGXKKIXVTGYASL----ENSVFSLNAGADAYIXKPVNPRDLL 112
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 29 LVVDD-DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD + +R + + L + ++V A +G A+ + DI+ +D MP M+G
Sbjct: 5 LVVDDIEANVRLLEA-KLTAEYYEVSTAMDGPTALAMAARDLP-DIILLDVMMPGMDGFT 62
Query: 88 ATREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
R+++ I +V +T+L+ +R +++G TKP+
Sbjct: 63 VCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 29 LVVDD-DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
LVVDD + +R + + L + ++V A +G A+ + DI+ +D MP M+G
Sbjct: 6 LVVDDIEANVRLLEA-KLTAEYYEVSTAMDGPTALAMAARDLP-DIILLDVMMPGMDGFT 63
Query: 88 ATREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
R+++ I +V +T+L+ +R +++G TKP+
Sbjct: 64 VCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDDD + + L+ G++V A +G+EA+ D + D +P ++G
Sbjct: 8 LIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLP-DALICDVLLPGIDGYTL 66
Query: 89 TREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+ +R + + I+ +T+ + + A +AG + KP +++
Sbjct: 67 CKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELV 115
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R+F +VDDD + ++ + VE ++ + + L S K DI+ +D MP M+
Sbjct: 5 RVF--IVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTL--SLNKQDIIILDLMMPDMD 60
Query: 85 GIEATREI---RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH--TKPLSVDKILPLME 139
GIE R + +S I I G S + + GL++ + TKP++ + + +
Sbjct: 61 GIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLT 120
Query: 140 DL 141
L
Sbjct: 121 SL 122
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 30 VVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
+VDD+ +R + L GF V++ ++ EA F + ++ D MP M+G+E
Sbjct: 8 IVDDEEPVRKSLAFMLTMNGFAVKMHQSA-EAFLAFAPDVRNGVLVTDLRMPDMSGVELL 66
Query: 90 REIRSMGIKIKIVGVT 105
R + + I I + +T
Sbjct: 67 RNLGDLKINIPSIVIT 82
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD---IVFIDKEMPVMNG 85
++DDD +R L+ GF V + EA+ +G D IV D MP M+G
Sbjct: 7 FLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL----AGLSADFAGIVISDIRMPGMDG 62
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+ R+I ++ + ++ VT +Q G KP + D+++
Sbjct: 63 LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLV 112
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD---IVFIDKEMPVMNG 85
++DDD +R L+ GF V + EA+ +G D IV D MP M+G
Sbjct: 7 FLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL----AGLSADFAGIVISDIRMPGMDG 62
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
+ R+I ++ + ++ VT +Q G KP + D+++
Sbjct: 63 LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLV 112
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIE 87
LV+DD+ + L+ G+ V A N EA+ L +GA KF+ + + + +G+
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKL--AGAEKFEFITVXLHLGNDSGLS 68
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
+ + +I+ +T S A ++ G D KP +V+ IL ++
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQ 120
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77
L+ DD+ + L GF V +G +A++ +SGA D V D
Sbjct: 9 LLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAAIDGVVTD 57
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 57 NGKEAVD-LFRSGAKFD--------IVFIDKEMPVMNGIEATREIRSMGI--KIKIVGVT 105
G +A+D L+++G+ + ++ +D +P +G E +EI+ + KI +V +T
Sbjct: 40 TGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMT 99
Query: 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
+ ++ + E + KPL +D++ ++ +K
Sbjct: 100 TSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPVMNG 85
L++DD +RT L S+ + V A NG++ ++L S D++ +D MP MNG
Sbjct: 9 LLIDDHPMLRT-GVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNG 66
Query: 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD 122
+E ++R + +IV + N E + ++ G D
Sbjct: 67 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGAD 103
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLG--FKVEVAENGKEAVDLFRSGAKF--DIVFIDKEM 80
++ L VDD +R I + + S V A + A DL + KF D++ +D EM
Sbjct: 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK---KFNPDVLTLDVEM 59
Query: 81 PVMNG---IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128
P M+G +E +R M + + + +T SE A +D TKP
Sbjct: 60 PRMDGLDFLEKLMRLRPMPV-VMVSSLTGKGSEVTLRALELGAIDFV-TKP 108
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
++P + A+ + MGIK K+V V L RE +A D T+ + DK
Sbjct: 669 DVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADK 723
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
++P + A+ + MGIK K+V V L RE +A D T+ + DK
Sbjct: 669 DVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADK 723
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
++P + A+ + MGIK K+V V L RE +A D T+ + DK
Sbjct: 669 DVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADK 723
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
++P + A+ + MGIK K+V V L RE +A D T+ + DK
Sbjct: 669 DVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADK 723
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 79 EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
++P + A+ + MGIK K+V V L RE +A D T+ + DK
Sbjct: 669 DVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADK 723
>pdb|3F6C|A Chain A, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
pdb|3F6C|B Chain B, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
Length = 134
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 26 LFALVVDDDCF-IRTIHSMALKS-LGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM 83
L A+++DD I I ++ +K+ + E+ E G AV + K DIV ID ++P +
Sbjct: 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGG-SAVQRVET-LKPDIVIIDVDIPGV 59
Query: 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139
NGI+ +R I+ V++ N + AG + +K ++ I+ +E
Sbjct: 60 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 115
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 30 VVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
+VDD+ +R + L GF V++ ++ EA F + ++ MP M+G+E
Sbjct: 8 IVDDEEPVRKSLAFMLTMNGFAVKMHQSA-EAFLAFAPDVRNGVLVTXLRMPDMSGVELL 66
Query: 90 REIRSMGIKIKIVGVT 105
R + + I I + +T
Sbjct: 67 RNLGDLKINIPSIVIT 82
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103
A+ GK A D+F G F ++ +D + NG+E T + K+ G
Sbjct: 7 YADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTG 56
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103
A+ GK A D+F G F ++ +D + NG+E T + K+ G
Sbjct: 10 YADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTG 59
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89
A+ GK A D+F G F ++ +D + NG+E T
Sbjct: 19 YADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFT 54
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 44 ALKSLGFKVEVAEN-----GKEAVDLFRSGAKFDIV-----FIDKE---MPVMNGIEATR 90
ALKS GFK+ V N K+ +D+ FD++ F +K+ PV+ +E
Sbjct: 94 ALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILG 153
Query: 91 EIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
E + IVG T + EA + A + L L
Sbjct: 154 EEPEKAL---IVGDTDADIEAGKRAGTKTALALW 184
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD + ++ L+ GF V +G +A+ R ++ NGI+
Sbjct: 9 LVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLXLPG-XNGIDV 67
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
R +R+ + IV +T+ + +++G D KP
Sbjct: 68 CRVLRADS-GVPIVXLTAKTDTVDVVLGLESGADDYIXKPF 107
>pdb|2QSJ|A Chain A, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
pdb|2QSJ|B Chain B, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
Length = 154
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSL--GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI 86
L+VDD IR L+ G +VE AE +A+ + D++ +D +P I
Sbjct: 7 LIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAI 66
Query: 87 E 87
+
Sbjct: 67 D 67
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMN 84
R LVVDD+ R + LKS G A+ +EA + + D +
Sbjct: 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLXITDLRXQPES 66
Query: 85 GIEATREIRS 94
G++ R IR+
Sbjct: 67 GLDLIRTIRA 76
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA----VDLFRSGAKFDIVFIDKEMPVMN 84
LVVDD+ I + S L+ G+ + A+ +EA +LF F ++ +D MP +
Sbjct: 5 LVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF-----FPVIVLDVWMPDGD 59
Query: 85 G---IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
G I+ +E + I I G S+++ +A + + KP SV++ L
Sbjct: 60 GVNFIDFIKENSPDSVVIVITGHGSVDTAV--KAIKKGAYEFLE-KPFSVERFL 110
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 44 ALKSLGFKVEVAEN-----GKEAVDLFRSGAKFDIV-----FIDKE---MPVMNGIEATR 90
ALKS GFK+ V N K+ +D+ FD++ F +K+ PV+ +E
Sbjct: 92 ALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILG 151
Query: 91 EIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
E + IVG T + EA + A + L L
Sbjct: 152 EEPEKAL---IVGDTDADIEAGKRAGTKTALALW 182
>pdb|2A2G|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2G|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2G|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2G|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer
Length = 181
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 8 SSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGK 59
+S+K+ KI EN S +R+F +D + SLGFK + ENG+
Sbjct: 44 ASNKREKIEENGS---MRVFMQHID----------VLENSLGFKFRIKENGE 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,677,546
Number of Sequences: 62578
Number of extensions: 129555
Number of successful extensions: 529
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 161
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)