BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048318
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M8Y4|ARR22_ARATH Two-component response regulator ARR22 OS=Arabidopsis thaliana
GN=ARR22 PE=2 SV=1
Length = 142
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIE 87
L+VDDD R +H M +K++G + A+NG+EAV L R G A FD++ +DKEMP +G+
Sbjct: 25 LIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEMPERDGVS 84
Query: 88 ATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
T+++R M + IVGVTS+ + E ER+AFM+AGL+ C KPL+ KI PL+ L
Sbjct: 85 TTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLISHL 139
>sp|A1TEL7|MPRA_MYCVP Response regulator MprA OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=mprA PE=3 SV=1
Length = 231
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G+EA+DL S + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASD-RPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|Q9P896|TCSA_EMENI Two-component system protein A OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tcsA
PE=3 SV=2
Length = 682
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 25 RLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPV 82
R L+V+D+ T+ L ++GF +++ A NG EAV + R +DI+ +D MPV
Sbjct: 561 RKHVLLVEDNIVNHTVMLKLLHTIGFQRIDGAWNGAEAVRMVRQKPLSYDIILMDVSMPV 620
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138
++G+ AT +IR MG+ + I+ +T + + E ++ G+D C KP+ D++L ++
Sbjct: 621 LDGLAATEQIRDMGLTMPIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLLRVL 676
>sp|Q56128|RCSC_SALTI Sensor protein RcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2
Length = 948
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVDKI 134
+KP+++D +
Sbjct: 923 LSKPVTLDAL 932
>sp|P58662|RCSC_SALTY Sensor protein RcsC OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rcsC PE=3 SV=1
Length = 948
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 5 EGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL 64
+ E+ S + + N + LVVDD R + + L SLG++ + A +G +A+++
Sbjct: 804 DSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV 863
Query: 65 FRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124
A DIV D MP M+G T+ IR +G+ + +VGVT+ E++ +++G+D C
Sbjct: 864 LSKNA-IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSC 922
Query: 125 HTKPLSVD 132
+KP+++D
Sbjct: 923 LSKPVTLD 930
>sp|Q1B3X8|MPRA_MYCSS Response regulator MprA OS=Mycobacterium sp. (strain MCS) GN=mprA
PE=3 SV=1
Length = 230
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+DL + + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|A1UL70|MPRA_MYCSK Response regulator MprA OS=Mycobacterium sp. (strain KMS) GN=mprA
PE=3 SV=1
Length = 230
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+DL + + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|A3Q5L9|MPRA_MYCSJ Response regulator MprA OS=Mycobacterium sp. (strain JLS) GN=mprA
PE=3 SV=1
Length = 230
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+DL + + D V +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
+ N + LVVDD R + + L SLG++ + A +G +A+++ S DIV D M
Sbjct: 820 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVLSDVNM 878
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKI 134
P M+G T+ IR +G+ + ++GVT+ E++ +++G+D C +KP+++D I
Sbjct: 879 PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932
>sp|A1KHB7|MPRA_MYCBP Response regulator MprA OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=mprA PE=3 SV=1
Length = 230
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|Q7U0X4|MPRA_MYCBO Response regulator MprA OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=mprA PE=1 SV=1
Length = 230
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|Q742C1|MPRA_MYCPA Response regulator MprA OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=mprA PE=3 SV=1
Length = 228
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>sp|A0QBQ9|MPRA_MYCA1 Response regulator MprA OS=Mycobacterium avium (strain 104) GN=mprA
PE=3 SV=1
Length = 228
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119
>sp|A0R3I8|MPRA_MYCS2 Response regulator MprA OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=mprA PE=1 SV=1
Length = 230
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A++G EA+D + + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAI-TNNRPDALILDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|O53894|MPRA_MYCTU Response regulator MprA OS=Mycobacterium tuberculosis GN=mprA PE=1
SV=1
Length = 230
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++R G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|A5U123|MPRA_MYCTA Response regulator MprA OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=mprA PE=3 SV=1
Length = 230
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+D+ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++R G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|A0PWB4|MPRA_MYCUA Response regulator MprA OS=Mycobacterium ulcerans (strain Agy99)
GN=mprA PE=3 SV=1
Length = 232
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD +R +L G+ VE+A +G EA+++ S + D + +D MP ++G+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASD-RPDALVLDVMMPRLDGLEV 64
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L M L++
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121
>sp|P39663|SPHR_SYNE7 Alkaline phosphatase synthesis transcriptional regulatory protein
SphR OS=Synechococcus elongatus (strain PCC 7942)
GN=sphR PE=1 SV=1
Length = 257
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--------FDIVFIDKEM 80
LVV+D+ IR + ++ L+ GF V+VA +G+ A++ FRS + D+V +D +
Sbjct: 27 LVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLML 86
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140
P +NG++ R +R G+ + I+ +++ ++E +R ++ G D TKP +++
Sbjct: 87 PAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARCRA 146
Query: 141 LMKNN 145
L++ +
Sbjct: 147 LLRRS 151
>sp|Q9P4U6|TCSB_EMENI Two-component system protein B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tcsB PE=1
SV=2
Length = 1065
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 73/120 (60%), Gaps = 10/120 (8%)
Query: 19 PSAKN---LRLFALVVDDDCFIRTI--HSMALKSLGFKVEVAENGKEAVDLFRS----GA 69
P AK+ ++ ALV +D+ + + +AL+ + + V V ++G+EA D ++ G
Sbjct: 923 PQAKDNGLKKIRALVAEDNVVNQEVVLRMLALEDV-YDVTVVKDGQEAYDTVKANMEEGK 981
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
FD++F+D +MP ++GIE+TR IR MG IV +++ + ++ + M +G+D+ +KP+
Sbjct: 982 VFDLIFMDIQMPNLDGIESTRLIRQMGCSAPIVALSAFSEDSNIKDCMNSGMDMFISKPI 1041
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 20/113 (17%)
Query: 29 LVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAK------------FDIVF 75
LVVDD+ R + + LK +G +VE ++GKEA+ L G FD +F
Sbjct: 989 LVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIF 1048
Query: 76 IDKEMPVMNGIEATREIR----SMGIKIKIVGVTSLN--SEAEREAFMQAGLD 122
+D +MP M+G EATREIR S G++ I+ V+ + SE RE +QAG+D
Sbjct: 1049 MDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET-IQAGMD 1100
>sp|Q9CD68|MPRA_MYCLE Response regulator MprA OS=Mycobacterium leprae (strain TN) GN=mprA
PE=3 SV=1
Length = 228
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L VDDD +R +L G+ VE+A +G EA+++ + + D + +D MP ++G+E
Sbjct: 4 LAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMV-ARDRPDALVLDVMMPRLDGLEV 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R++RS G + I+ +T+ +S +ER A + AG D KP +++++L + L++
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRT 119
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ R + + ALK G +V AE+G+ A+ L + FD F+D +MP M+G EA
Sbjct: 948 LVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEA 1007
Query: 89 TREIRSMGIKIK----------IVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
TR+IR M + K I+ +T+ A E +++G+D +KP
Sbjct: 1008 TRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPF 1058
>sp|Q86AT9|DHKI_DICDI Hybrid signal transduction histidine kinase I OS=Dictyostelium
discoideum GN=dhkI-1 PE=3 SV=1
Length = 1736
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK----FDIVFIDKEMPVMN 84
LV +D+ + + L GF + +A++GK+A+D + +D + +D +MP+++
Sbjct: 1553 LVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMPILS 1612
Query: 85 GIEATREIRSM----GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130
G+EAT IR + G I I+ VT+ + ++E F+++G+D TKP++
Sbjct: 1613 GLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPIN 1662
>sp|P30855|EVGS_ECOLI Sensor protein EvgS OS=Escherichia coli (strain K12) GN=evgS PE=1
SV=2
Length = 1197
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E P +L L+ DD R + L LG+ V+ A +G +A+ S +D++
Sbjct: 950 EQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-SMQHYDLLIT 1008
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP M+G E TR++R + I G+T+ ERE + G++LC KPL++D
Sbjct: 1009 DVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLD 1064
>sp|A7MRY4|LUXN_VIBHB Autoinducer 1 sensor kinase/phosphatase LuxN OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=luxN PE=1 SV=1
Length = 849
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
S + K+ N N L+VDD R + M L LG A NG+ AV++F++
Sbjct: 705 SNEHKVAPNVQINNQSPTVLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKAN- 763
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
D++ +D +MPVMNG +A++ I+ + + IV ++ + E E + + +D KP
Sbjct: 764 HVDLILMDVQMPVMNGFDASQRIKELSPQTPIVALSGESGERELD-MINKLMDGRLEKPT 822
Query: 130 SVDKILPLMEDLMKNN 145
+++ + ++ + + N
Sbjct: 823 TLNALRHVLGNWLNKN 838
>sp|P0C5S6|LUXN_VIBHA Autoinducer 1 sensor kinase/phosphatase LuxN OS=Vibrio harveyi
GN=luxN PE=3 SV=1
Length = 849
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 10 SKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA 69
S + K+ N N L+VDD R + M L LG A NG+ AV++F++
Sbjct: 705 SNEHKVAPNVQINNQSPTVLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKAN- 763
Query: 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129
D++ +D +MPVMNG +A++ I+ + + IV ++ + E E + + +D KP
Sbjct: 764 HVDLILMDVQMPVMNGFDASQRIKELSPQTPIVALSGESGERELD-MINKLMDGRLEKPT 822
Query: 130 SVDKILPLMEDLMKNN 145
+++ + ++ + + N
Sbjct: 823 TLNALRHVLGNWLNKN 838
>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium
discoideum GN=dhkA PE=1 SV=1
Length = 2150
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
AL+V+D+ R + + K + + + AENG+EA+ FDIVF+D +MPV++G +
Sbjct: 2027 ALIVEDNELNRKVLAQLFKKIDWTISFAENGREALKEITGERCFDIVFMDCQMPVLDGFQ 2086
Query: 88 ATREIRSMG-----IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131
T+ IRS ++ IV +++ +S + + + +G+D KP+++
Sbjct: 2087 TTKIIRSKERENNWKRMNIVALSAGSSSSFVQDCLDSGMDSFMGKPITL 2135
>sp|Q83RR0|PHOP_SHIFL Virulence transcriptional regulatory protein PhoP OS=Shigella
flexneri GN=phoP PE=3 SV=1
Length = 223
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + ++ G +V+ AE+ KEA D + + DI +D +P +G+
Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHLPDIAIVDLGLPDEDGLSL 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + I+ +T+ S ++ + AG D TKP +++++ M+ LM+ N
Sbjct: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119
>sp|Q8CXZ9|PHOP_ECOL6 Transcriptional regulatory protein PhoP OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=phoP PE=3 SV=1
Length = 223
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + ++ G +V+ AE+ KEA D + + DI +D +P +G+
Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHLPDIAIVDLGLPDEDGLSL 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + I+ +T+ S ++ + AG D TKP +++++ M+ LM+ N
Sbjct: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119
>sp|P23836|PHOP_ECOLI Transcriptional regulatory protein PhoP OS=Escherichia coli (strain
K12) GN=phoP PE=1 SV=1
Length = 223
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + ++ G +V+ AE+ KEA D + + DI +D +P +G+
Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGLSL 62
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + I+ +T+ S ++ + AG D TKP +++++ M+ LM+ N
Sbjct: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119
>sp|Q9KM66|CQSS_VIBCH CAI-1 autoinducer sensor kinase/phosphatase CqsS OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=cqsS PE=1 SV=1
Length = 686
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 2 MLGEGESSSKKAKIMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEA 61
+L E ES S ++ +++ R LVVDD+ IRT ++ L+ G++V A +G E
Sbjct: 545 LLFEQESLSMNRNVIPLQKSRHERRI-LVVDDNQSIRTFTAILLEQQGYEVVQANDGSEV 603
Query: 62 VDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK---IVGVTSLNSEAEREAFMQ 118
+ S D+V +D EMP + G+EATR IR+ + K I+G T NS
Sbjct: 604 LKHMES-QNIDLVLMDIEMPNVGGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQT 662
Query: 119 AGLDLCHTKPLSVDKIL 135
+G++ KP D +L
Sbjct: 663 SGMNDFIVKPADRDVLL 679
>sp|P58402|EVGS_ECO57 Sensor protein EvgS OS=Escherichia coli O157:H7 GN=evgS PE=3 SV=1
Length = 1197
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 17 ENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76
E P +L L+ DD R + L LG+ V+ A +G +A+ S +D++
Sbjct: 950 EQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-SMQHYDLLIT 1008
Query: 77 DKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132
D MP ++G E TR++R + I G+T+ ERE + G++LC KPL++D
Sbjct: 1009 DVNMPNVDGFELTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLD 1064
>sp|Q9APD9|ZRAR_KLEOX Transcriptional regulatory protein ZraR OS=Klebsiella oxytoca
GN=zraR PE=3 SV=1
Length = 443
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDDD TI L+ G++V +A NG +A++ R FD+V D M M+GIE
Sbjct: 9 LVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKV-FDLVLCDIRMAEMDGIET 67
Query: 89 TREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKI-LPLMEDL 141
+EI++ I ++ +T+ +S + EA LD KPL DK+ L L E L
Sbjct: 68 LKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYL-IKPLDFDKLQLTLSEAL 121
>sp|Q8D0P1|CHEY_YERPE Chemotaxis protein CheY OS=Yersinia pestis GN=cheY PE=3 SV=3
Length = 129
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
KNLR LVVDD +R I LK LGF VE AE+G +A++ R+G FD V D M
Sbjct: 4 KNLRF--LVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGG-FDFVVSDWNM 60
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
P M+G++ + IR+ G + + V + +EA++E A QAG KP +
Sbjct: 61 PNMDGLDLLKTIRTDG-ALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>sp|Q93P00|CHEY_YEREN Chemotaxis protein CheY OS=Yersinia enterocolitica GN=cheY PE=3
SV=3
Length = 129
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEM 80
KNLR LVVDD +R I LK LGF VE AE+G +A++ R+G FD V D M
Sbjct: 4 KNLRF--LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRTGG-FDFVVSDWNM 60
Query: 81 PVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE---AFMQAGLDLCHTKPLS 130
P M+G++ + IR+ G + + V + +EA++E A QAG KP +
Sbjct: 61 PNMDGLDLLKTIRADG-ALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
>sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
Length = 1176
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVVDD+ R + ALK G V E+GK A+ + + FD F+D +MP M+G EA
Sbjct: 1038 LVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEA 1097
Query: 89 TREIRSM----------------------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
TR +R + + I+ +T+ +A E M+ G+D +
Sbjct: 1098 TRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDGYVS 1157
Query: 127 KPL 129
KP
Sbjct: 1158 KPF 1160
>sp|P35163|RESD_BACSU Transcriptional regulatory protein ResD OS=Bacillus subtilis
(strain 168) GN=resD PE=3 SV=2
Length = 240
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG--AKFDIVFIDKEMPVMNGI 86
LVVDD+ IR + M L+ + ++ AENG EA+ G A +D++ +D MP +GI
Sbjct: 10 LVVDDEARIRRLLRMYLERENYAIDEAENGDEAI---AKGLEANYDLILLDLMMPGTDGI 66
Query: 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143
E R+IR I+ +T+ EA R +AG D KP S +++ ++ L++
Sbjct: 67 EVCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122
>sp|P32040|Y851_SYNP2 Probable transcriptional regulatory protein SYNPCC7002_A0851
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=SYNPCC7002_A0851 PE=3 SV=2
Length = 251
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA------KFDIVFIDKEMPV 82
LVV+D+ IR + M L+ G++V A+NG+ +++ ++ D+V +D +P
Sbjct: 22 LVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIMLPE 81
Query: 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
+NG++ R +R G I I+ +++ SE +R ++ G D TKP S+ +++ L+
Sbjct: 82 VNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCRALL 141
Query: 143 KNN 145
+
Sbjct: 142 RRQ 144
>sp|P14146|PHOP_SALTY Virulence transcriptional regulatory protein PhoP OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=phoP PE=1 SV=1
Length = 224
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + L+ G +V+ AE+ +EA D + + DI +D +P +G+
Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREA-DYYLNEHLPDIAIVDLGLPDEDGLSL 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + ++ +T+ ++ + +G D TKP +++++ M+ LM+ N
Sbjct: 64 IRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRN 120
>sp|Q5PMJ1|PHOP_SALPA Virulence transcriptional regulatory protein PhoP OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=phoP PE=3
SV=1
Length = 224
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + L+ G +V+ AE+ +EA D + + DI +D +P +G+
Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREA-DYYLNEHLPDIAIVDLGLPDEDGLSL 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + ++ +T+ ++ + +G D TKP +++++ M+ LM+ N
Sbjct: 64 IRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRN 120
>sp|Q8Z7H2|PHOP_SALTI Virulence transcriptional regulatory protein PhoP OS=Salmonella
typhi GN=phoP PE=3 SV=1
Length = 224
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + L+ G +V+ AE+ +EA D + + DI +D +P +G+
Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREA-DYYLNEHLPDIAIVDLGLPDEDGLSL 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS + + ++ +T+ ++ + +G D TKP +++++ M+ LM+ N
Sbjct: 64 IRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRN 120
>sp|Q55E44|DHKE_DICDI Hybrid signal transduction histidine kinase E OS=Dictyostelium
discoideum GN=dhkE PE=3 SV=1
Length = 1699
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 19 PSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78
P R AL+VDD R + + L+ + + V AENG EA+ S FDI+F+D
Sbjct: 1567 PPVTPHRRNALIVDDTELNRKVLAQLLRRMDWSVSFAENGIEALKEITSERCFDIIFMDC 1626
Query: 79 EMPVMNGIEAT-----REIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133
+MP+++G E T RE+ + + IV +++ +S + + G++ KP++
Sbjct: 1627 QMPILDGFETTKLLRLRELENNWKPLNIVALSADSSSSFGQVCFDCGMNGYLGKPIT--- 1683
Query: 134 ILPLMEDLMK 143
++ L + L+K
Sbjct: 1684 LITLKDTLLK 1693
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
Length = 1036
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ + + ALK G V AE+G +A+ L + +FD F+D +MP M+G EA
Sbjct: 893 LIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEA 952
Query: 89 TREIRSM----------------------GIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126
TR IR M + ++ +T+ +A E ++ G+D +
Sbjct: 953 TRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVS 1012
Query: 127 KPLSVDKIL 135
KP +++
Sbjct: 1013 KPFEAEQLY 1021
>sp|Q57QC3|PHOP_SALCH Virulence transcriptional regulatory protein PhoP OS=Salmonella
choleraesuis (strain SC-B67) GN=phoP PE=3 SV=1
Length = 224
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
LVV+D+ +R + L+ G +V+ E+ +EA D + + DI +D +P +G+
Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDATEDAREA-DYYLNEHLPDIAIVDLGLPDEDGLSL 63
Query: 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145
R RS I + ++ +T+ ++ + +G D TKP +++++ M+ LM+ N
Sbjct: 64 IRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRN 120
>sp|Q06065|ATOC_ECOLI Acetoacetate metabolism regulatory protein AtoC OS=Escherichia coli
(strain K12) GN=atoC PE=3 SV=2
Length = 461
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+VDD+ +R + S A GF+ A NG+ A+ LF + D+V +D MP M+GI+A
Sbjct: 8 LIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDGIKA 66
Query: 89 TREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDKI 134
+E+RS + ++ +T+ E EA D KP +D++
Sbjct: 67 LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYV-IKPFDLDEL 112
>sp|O74539|MAK3_SCHPO Peroxide stress-activated histidine kinase mak3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak3 PE=1 SV=1
Length = 2344
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAK--FDIVFIDKEMPVMNGI 86
L+ +D+ +R L+ LG V+ AE+GKE + +F S + + F+D MPV +G+
Sbjct: 2213 LIAEDNPIVRMTLKKQLEHLGMDVDAAEDGKETLQIFESHPDNYYQVCFVDYHMPVYDGL 2272
Query: 87 EATREIRSMGIK-----IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141
E TR +R + K + I +T+ F + G+ +KP + ++ ++
Sbjct: 2273 EVTRRMRKIERKHGCAPLPIFALTADMQPTMETQFQEVGITHYLSKPFKKETLIKMLLQY 2332
Query: 142 MKN 144
+ N
Sbjct: 2333 LVN 2335
>sp|P18769|FRZE_MYXXA Gliding motility regulatory protein OS=Myxococcus xanthus GN=frzE
PE=1 SV=1
Length = 777
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 15 IMENPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIV 74
+ + P+AK LR+ L+VDD R +K+LG VE A++G+EA ++ +D++
Sbjct: 650 VTQAPAAKRLRV--LLVDDSPIARATEGALVKALGHSVEEAQDGEEAYVKVQNNT-YDLI 706
Query: 75 FIDKEMPVMNGIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLD 122
D +MP ++G R ++S +I ++ ++SL S ++ + AG D
Sbjct: 707 LTDVQMPKLDGFSLARRLKSTPAVARIPVIILSSLASPEDKRRGLDAGAD 756
>sp|A7N6S2|CQSS_VIBHB CAI-1 autoinducer sensor kinase/phosphatase CqsS OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=cqsS PE=1 SV=1
Length = 681
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
+VVDD+ +R +M L+ GF+V E+G +A++ D++ +D EMPVM+G+EA
Sbjct: 566 MVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNEN-NVDLILMDIEMPVMDGVEA 624
Query: 89 TREIR 93
+R+IR
Sbjct: 625 SRQIR 629
>sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium
discoideum GN=dhkJ PE=3 SV=2
Length = 2062
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88
L+ +D+ + + L+ G +V++AENG +AV + KFD++ +D +MP G EA
Sbjct: 1732 LLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQL-RKFDLILMDVQMPHCGGFEA 1790
Query: 89 TREIR----SMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142
T +IR GI I+ +T+ +R ++AG+D +KP++ D++ ++E +
Sbjct: 1791 TAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848
>sp|P24072|CHEY_BACSU Chemotaxis protein CheY OS=Bacillus subtilis (strain 168) GN=cheY
PE=1 SV=3
Length = 120
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 29 LVVDDDCFIRTIHSMALKSLGFKVEV-AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIE 87
L+VDD F+R + L GF+V AENG +AV+ ++ + D+V +D MP M+GI
Sbjct: 6 LIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSP-DLVTMDITMPEMDGIT 64
Query: 88 ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135
A +EI+ + + +I+ +++ ++ +QAG KP D++L
Sbjct: 65 ALKEIKQIDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVL 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,183,107
Number of Sequences: 539616
Number of extensions: 1740169
Number of successful extensions: 5778
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 5203
Number of HSP's gapped (non-prelim): 660
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)