Query 048318
Match_columns 145
No_of_seqs 115 out of 1147
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 4.1E-26 9E-31 159.7 16.3 118 26-145 1-119 (229)
2 PF00072 Response_reg: Respons 99.9 1.8E-22 4E-27 126.3 15.5 111 28-139 1-112 (112)
3 COG2204 AtoC Response regulato 99.9 1.7E-22 3.6E-27 152.1 16.0 119 25-144 4-122 (464)
4 COG4753 Response regulator con 99.9 3.2E-22 6.9E-27 150.4 13.9 117 26-143 2-121 (475)
5 COG4565 CitB Response regulato 99.9 1.6E-21 3.4E-26 131.9 13.5 117 26-143 1-119 (224)
6 COG4566 TtrR Response regulato 99.9 2.5E-21 5.4E-26 128.7 13.8 119 25-144 4-122 (202)
7 COG2197 CitB Response regulato 99.9 1.1E-20 2.5E-25 131.0 16.0 118 27-145 2-121 (211)
8 PRK10046 dpiA two-component re 99.8 1.9E-19 4.2E-24 126.0 16.0 119 24-143 3-123 (225)
9 PRK10816 DNA-binding transcrip 99.8 3.5E-19 7.6E-24 123.7 16.6 118 26-144 1-118 (223)
10 COG3437 Response regulator con 99.8 9.6E-20 2.1E-24 131.7 13.3 120 22-142 11-133 (360)
11 PRK09836 DNA-binding transcrip 99.8 6.4E-19 1.4E-23 122.7 16.7 118 26-144 1-118 (227)
12 PRK10161 transcriptional regul 99.8 2E-18 4.3E-23 120.4 16.7 119 25-144 2-122 (229)
13 PRK10529 DNA-binding transcrip 99.8 2.2E-18 4.7E-23 119.8 16.7 117 26-144 2-118 (225)
14 PRK10766 DNA-binding transcrip 99.8 2.1E-18 4.6E-23 119.5 16.6 118 25-144 2-119 (221)
15 PRK09468 ompR osmolarity respo 99.8 2.1E-18 4.5E-23 121.1 16.7 119 25-144 5-123 (239)
16 PRK10643 DNA-binding transcrip 99.8 2.4E-18 5.3E-23 118.9 16.6 118 26-144 1-118 (222)
17 PRK10336 DNA-binding transcrip 99.8 2.4E-18 5.1E-23 118.9 16.4 117 26-143 1-117 (219)
18 PRK11173 two-component respons 99.8 2.4E-18 5.2E-23 120.8 16.5 117 26-144 4-120 (237)
19 COG0784 CheY FOG: CheY-like re 99.8 3.6E-18 7.9E-23 109.3 16.0 118 25-143 5-125 (130)
20 PRK10840 transcriptional regul 99.8 2.2E-18 4.8E-23 119.8 15.8 119 25-144 3-126 (216)
21 TIGR03787 marine_sort_RR prote 99.8 5E-18 1.1E-22 118.1 16.5 117 27-144 2-120 (227)
22 PRK11083 DNA-binding response 99.8 5E-18 1.1E-22 117.8 16.4 118 26-144 4-121 (228)
23 COG4567 Response regulator con 99.8 2.8E-18 6E-23 110.3 13.5 114 27-141 11-124 (182)
24 TIGR02154 PhoB phosphate regul 99.8 5.7E-18 1.2E-22 117.3 16.4 119 25-144 2-122 (226)
25 COG3706 PleD Response regulato 99.8 2.2E-18 4.7E-23 129.1 15.0 120 24-144 131-252 (435)
26 PRK10955 DNA-binding transcrip 99.8 8.8E-18 1.9E-22 117.1 16.5 116 26-144 2-117 (232)
27 PRK09958 DNA-binding transcrip 99.8 8.2E-18 1.8E-22 115.2 16.1 118 26-144 1-119 (204)
28 PRK13856 two-component respons 99.8 1E-17 2.2E-22 118.0 16.5 116 27-144 3-119 (241)
29 PRK10701 DNA-binding transcrip 99.8 1.3E-17 2.7E-22 117.2 16.6 117 26-144 2-118 (240)
30 PRK10841 hybrid sensory kinase 99.8 7.9E-18 1.7E-22 137.8 17.6 119 24-143 800-918 (924)
31 CHL00148 orf27 Ycf27; Reviewed 99.8 1.5E-17 3.3E-22 116.4 16.8 118 25-144 6-123 (240)
32 PRK09483 response regulator; P 99.8 1.5E-17 3.2E-22 114.9 16.1 118 26-144 2-121 (217)
33 PRK10430 DNA-binding transcrip 99.8 1.4E-17 3.1E-22 117.4 16.2 116 26-141 2-120 (239)
34 PRK11517 transcriptional regul 99.8 1.8E-17 4E-22 114.8 16.5 117 26-144 1-117 (223)
35 TIGR01387 cztR_silR_copR heavy 99.8 1.6E-17 3.5E-22 114.5 15.9 116 28-144 1-116 (218)
36 PLN03029 type-a response regul 99.8 1.6E-17 3.5E-22 116.2 15.7 119 24-142 7-146 (222)
37 PRK11466 hybrid sensory histid 99.8 1.2E-17 2.6E-22 136.7 16.5 120 24-143 680-799 (914)
38 KOG0519 Sensory transduction h 99.8 5.1E-18 1.1E-22 136.5 13.9 120 24-143 665-785 (786)
39 COG3947 Response regulator con 99.8 4.4E-18 9.5E-23 120.1 10.8 116 26-144 1-116 (361)
40 PRK11107 hybrid sensory histid 99.8 3.4E-17 7.4E-22 133.9 16.8 119 24-143 666-786 (919)
41 PRK15347 two component system 99.8 3.5E-17 7.7E-22 133.9 16.6 118 24-142 689-810 (921)
42 PRK09935 transcriptional regul 99.8 1E-16 2.2E-21 109.9 16.4 119 25-144 3-123 (210)
43 PRK15115 response regulator Gl 99.8 4.7E-17 1E-21 124.1 16.0 118 25-143 5-122 (444)
44 TIGR02875 spore_0_A sporulatio 99.8 9.1E-17 2E-21 114.6 16.1 118 25-143 2-123 (262)
45 TIGR02956 TMAO_torS TMAO reduc 99.8 4.6E-17 9.9E-22 133.9 16.4 118 25-143 702-822 (968)
46 PRK10365 transcriptional regul 99.8 6.8E-17 1.5E-21 123.0 15.7 118 25-143 5-122 (441)
47 PRK10923 glnG nitrogen regulat 99.8 9.4E-17 2E-21 123.2 16.5 117 26-143 4-120 (469)
48 PRK15479 transcriptional regul 99.7 2.7E-16 5.8E-21 108.6 16.4 118 26-144 1-118 (221)
49 PRK11361 acetoacetate metaboli 99.7 1.4E-16 3.1E-21 121.8 16.3 118 25-143 4-121 (457)
50 PRK10710 DNA-binding transcrip 99.7 4.1E-16 8.8E-21 109.2 17.1 116 26-143 11-126 (240)
51 PRK10360 DNA-binding transcrip 99.7 3.1E-16 6.7E-21 106.7 15.4 115 26-144 2-118 (196)
52 PRK14084 two-component respons 99.7 3.2E-16 6.9E-21 110.8 15.8 115 26-143 1-117 (246)
53 TIGR02915 PEP_resp_reg putativ 99.7 1.6E-16 3.5E-21 121.2 15.1 113 28-143 1-118 (445)
54 PRK11091 aerobic respiration c 99.7 2.1E-16 4.6E-21 127.7 16.5 118 24-143 524-644 (779)
55 TIGR01818 ntrC nitrogen regula 99.7 2.5E-16 5.4E-21 120.7 15.6 115 28-143 1-115 (463)
56 PRK09959 hybrid sensory histid 99.7 2.6E-16 5.7E-21 131.9 16.6 117 25-142 958-1074(1197)
57 PRK09390 fixJ response regulat 99.7 5.9E-16 1.3E-20 105.0 15.1 118 25-143 3-120 (202)
58 PRK09581 pleD response regulat 99.7 4.4E-16 9.5E-21 118.2 13.3 118 23-142 153-272 (457)
59 PRK09581 pleD response regulat 99.7 1.9E-15 4.1E-20 114.8 16.6 117 26-143 3-121 (457)
60 PRK10100 DNA-binding transcrip 99.7 1.2E-15 2.5E-20 106.3 13.9 114 25-144 10-127 (216)
61 PRK10610 chemotaxis regulatory 99.7 8.6E-15 1.9E-19 91.8 16.3 119 25-144 5-126 (129)
62 PRK10651 transcriptional regul 99.7 4.6E-15 1E-19 101.9 16.1 119 25-144 6-126 (216)
63 PRK10403 transcriptional regul 99.7 5.4E-15 1.2E-19 101.4 16.1 118 25-143 6-125 (215)
64 PRK11475 DNA-binding transcrip 99.7 1.4E-15 3.1E-20 105.2 13.0 106 38-144 3-115 (207)
65 PRK11697 putative two-componen 99.7 4.2E-15 9E-20 104.4 15.5 114 26-143 2-117 (238)
66 PRK13435 response regulator; P 99.7 5.7E-15 1.2E-19 96.4 14.5 115 25-144 5-121 (145)
67 PRK13558 bacterio-opsin activa 99.7 2E-15 4.3E-20 120.2 14.5 117 25-142 7-125 (665)
68 PRK15369 two component system 99.7 1E-14 2.2E-19 99.5 16.0 119 25-144 3-123 (211)
69 PRK15411 rcsA colanic acid cap 99.7 6.3E-15 1.4E-19 102.1 14.8 116 27-144 2-123 (207)
70 PRK12555 chemotaxis-specific m 99.7 5.8E-15 1.3E-19 109.1 15.1 115 26-142 1-128 (337)
71 PRK00742 chemotaxis-specific m 99.7 9.8E-15 2.1E-19 108.5 15.5 116 25-142 3-131 (354)
72 PRK13837 two-component VirA-li 99.6 3.6E-14 7.8E-19 115.6 16.8 116 25-143 697-813 (828)
73 COG3707 AmiR Response regulato 99.6 2.5E-14 5.4E-19 95.8 11.4 118 24-143 4-122 (194)
74 PRK13557 histidine kinase; Pro 99.6 1.1E-13 2.4E-18 107.1 16.3 121 24-144 414-535 (540)
75 PRK09191 two-component respons 99.6 1.3E-13 2.8E-18 98.1 15.4 116 24-143 136-253 (261)
76 cd00156 REC Signal receiver do 99.6 2.3E-13 5E-18 82.2 13.3 112 29-141 1-112 (113)
77 COG2201 CheB Chemotaxis respon 99.5 5.2E-13 1.1E-17 97.7 14.5 104 25-130 1-108 (350)
78 PRK10693 response regulator of 99.5 6.1E-13 1.3E-17 97.1 11.9 88 54-142 2-90 (303)
79 PRK15029 arginine decarboxylas 99.5 9.5E-13 2.1E-17 105.2 12.6 115 27-142 2-131 (755)
80 COG3279 LytT Response regulato 99.2 2.1E-10 4.6E-15 81.3 11.9 114 26-142 2-117 (244)
81 PRK11107 hybrid sensory histid 98.9 1.1E-07 2.4E-12 78.4 14.3 113 24-141 535-649 (919)
82 PF06490 FleQ: Flagellar regul 98.8 1E-07 2.3E-12 59.5 9.8 107 27-141 1-107 (109)
83 PF03709 OKR_DC_1_N: Orn/Lys/A 98.6 9.2E-07 2E-11 55.8 9.4 108 37-145 5-115 (115)
84 cd02071 MM_CoA_mut_B12_BD meth 98.4 3.9E-05 8.5E-10 48.8 13.2 107 32-139 10-121 (122)
85 PRK02261 methylaspartate mutas 98.4 7.9E-05 1.7E-09 48.4 14.6 118 25-144 3-136 (137)
86 COG3706 PleD Response regulato 98.4 8.1E-07 1.8E-11 67.4 5.7 91 50-143 13-103 (435)
87 TIGR00640 acid_CoA_mut_C methy 98.3 9.2E-05 2E-09 47.8 13.6 110 32-142 13-127 (132)
88 smart00448 REC cheY-homologous 98.2 2E-05 4.3E-10 40.5 8.0 53 27-80 2-54 (55)
89 TIGR01501 MthylAspMutase methy 98.0 0.00083 1.8E-08 43.4 12.5 111 32-143 12-133 (134)
90 cd02067 B12-binding B12 bindin 97.8 0.00074 1.6E-08 42.5 10.8 93 32-126 10-108 (119)
91 PRK15399 lysine decarboxylase 97.8 0.00038 8.2E-09 56.3 11.3 114 27-143 2-122 (713)
92 PRK15400 lysine decarboxylase 97.7 0.00055 1.2E-08 55.4 10.8 114 27-143 2-122 (714)
93 cd02072 Glm_B12_BD B12 binding 97.6 0.0048 1E-07 39.5 11.7 105 33-139 11-127 (128)
94 PF02310 B12-binding: B12 bind 97.5 0.0051 1.1E-07 38.6 10.5 93 33-127 12-111 (121)
95 COG2185 Sbm Methylmalonyl-CoA 97.4 0.013 2.9E-07 38.1 12.9 117 25-142 12-137 (143)
96 cd02070 corrinoid_protein_B12- 97.2 0.024 5.1E-07 39.2 12.1 96 26-125 83-189 (201)
97 COG4999 Uncharacterized domain 97.1 0.0088 1.9E-07 37.6 8.3 109 25-138 11-121 (140)
98 cd02069 methionine_synthase_B1 97.1 0.022 4.7E-07 39.8 11.3 99 26-125 89-199 (213)
99 PRK09426 methylmalonyl-CoA mut 97.0 0.041 9E-07 45.1 13.5 116 25-142 582-707 (714)
100 TIGR03815 CpaE_hom_Actino heli 96.8 0.009 2E-07 44.1 7.4 84 49-141 1-85 (322)
101 cd02068 radical_SAM_B12_BD B12 96.7 0.058 1.3E-06 34.2 10.0 103 37-141 4-110 (127)
102 COG0512 PabA Anthranilate/para 96.7 0.015 3.2E-07 39.7 7.3 80 26-106 2-82 (191)
103 PRK10618 phosphotransfer inter 96.6 0.0065 1.4E-07 50.9 6.6 49 24-79 688-736 (894)
104 TIGR02370 pyl_corrinoid methyl 96.5 0.093 2E-06 36.2 10.5 90 32-125 95-191 (197)
105 PRK10558 alpha-dehydro-beta-de 96.4 0.087 1.9E-06 37.9 10.3 100 38-139 7-111 (256)
106 PRK10128 2-keto-3-deoxy-L-rham 96.4 0.11 2.3E-06 37.7 10.6 98 40-139 8-110 (267)
107 cd04728 ThiG Thiazole synthase 96.3 0.23 5E-06 35.3 12.9 94 47-143 121-225 (248)
108 PRK00208 thiG thiazole synthas 96.3 0.25 5.3E-06 35.3 13.0 93 47-142 121-224 (250)
109 TIGR02311 HpaI 2,4-dihydroxyhe 96.1 0.2 4.4E-06 35.8 10.9 98 41-140 3-105 (249)
110 TIGR03239 GarL 2-dehydro-3-deo 96.1 0.19 4.1E-06 36.0 10.6 97 41-139 3-104 (249)
111 TIGR02026 BchE magnesium-proto 95.9 0.37 8.1E-06 37.9 12.4 107 34-142 21-136 (497)
112 PF02254 TrkA_N: TrkA-N domain 95.8 0.23 5E-06 30.7 10.0 92 26-125 22-114 (116)
113 PRK10669 putative cation:proto 95.5 0.41 8.9E-06 38.2 11.5 107 25-142 440-547 (558)
114 PRK00043 thiE thiamine-phospha 95.3 0.57 1.2E-05 32.2 12.2 87 54-143 110-209 (212)
115 PRK03659 glutathione-regulated 95.3 0.71 1.5E-05 37.3 12.2 93 26-126 424-517 (601)
116 PRK08385 nicotinate-nucleotide 95.0 0.93 2E-05 33.1 10.9 95 27-126 156-258 (278)
117 COG3836 HpcH 2,4-dihydroxyhept 95.0 0.84 1.8E-05 32.4 10.2 90 40-131 7-100 (255)
118 PRK05749 3-deoxy-D-manno-octul 94.9 1 2.2E-05 34.4 11.8 111 25-143 262-387 (425)
119 PRK07428 nicotinate-nucleotide 94.9 0.35 7.5E-06 35.4 8.6 95 27-125 168-269 (288)
120 PF01729 QRPTase_C: Quinolinat 94.8 0.27 5.8E-06 33.1 7.3 95 27-125 52-153 (169)
121 PRK05458 guanosine 5'-monophos 94.7 0.98 2.1E-05 33.7 10.8 66 59-125 100-166 (326)
122 cd02065 B12-binding_like B12 b 94.7 0.36 7.9E-06 30.1 7.6 72 32-104 10-86 (125)
123 PF10087 DUF2325: Uncharacteri 94.7 0.53 1.1E-05 28.5 10.3 87 27-117 1-93 (97)
124 TIGR01334 modD putative molybd 94.6 0.5 1.1E-05 34.4 8.8 95 27-125 158-261 (277)
125 PF07688 KaiA: KaiA domain; I 94.6 0.63 1.4E-05 33.4 8.9 78 27-107 2-80 (283)
126 PRK07896 nicotinate-nucleotide 94.5 0.44 9.5E-06 34.9 8.4 96 27-126 172-273 (289)
127 PRK03562 glutathione-regulated 94.4 0.84 1.8E-05 37.1 10.6 93 25-125 423-516 (621)
128 PRK01130 N-acetylmannosamine-6 94.0 1.4 3.1E-05 30.7 11.2 87 38-127 107-202 (221)
129 COG0157 NadC Nicotinate-nucleo 93.8 0.96 2.1E-05 32.9 8.8 95 27-126 160-261 (280)
130 cd00452 KDPG_aldolase KDPG and 93.8 1.4 3.1E-05 30.0 9.5 75 48-127 96-171 (190)
131 PF01408 GFO_IDH_MocA: Oxidore 93.8 0.96 2.1E-05 28.0 10.5 105 27-143 2-111 (120)
132 PRK05718 keto-hydroxyglutarate 93.7 1.6 3.5E-05 30.5 10.7 92 42-137 9-103 (212)
133 PF05690 ThiG: Thiazole biosyn 93.6 1.8 4E-05 30.7 10.3 97 42-142 116-224 (247)
134 PRK05848 nicotinate-nucleotide 93.6 0.88 1.9E-05 33.1 8.4 96 27-126 154-256 (273)
135 PF03602 Cons_hypoth95: Conser 93.4 0.4 8.6E-06 32.7 6.1 68 27-94 67-139 (183)
136 PF03328 HpcH_HpaI: HpcH/HpaI 93.4 1.9 4.1E-05 30.1 10.2 83 56-139 8-104 (221)
137 cd01573 modD_like ModD; Quinol 93.3 1.6 3.4E-05 31.8 9.4 96 27-126 154-257 (272)
138 TIGR02082 metH 5-methyltetrahy 93.2 5.5 0.00012 35.0 13.6 99 26-125 733-843 (1178)
139 PRK06843 inosine 5-monophospha 93.0 0.85 1.8E-05 35.0 7.9 56 69-125 164-220 (404)
140 TIGR00693 thiE thiamine-phosph 92.9 2 4.4E-05 29.2 9.4 69 54-125 102-178 (196)
141 TIGR01305 GMP_reduct_1 guanosi 92.9 1 2.2E-05 33.7 8.0 57 70-127 121-178 (343)
142 PF01596 Methyltransf_3: O-met 92.9 1.1 2.5E-05 31.1 7.9 68 25-94 70-143 (205)
143 TIGR00566 trpG_papA glutamine 92.9 0.75 1.6E-05 31.4 6.9 77 28-106 2-80 (188)
144 cd04729 NanE N-acetylmannosami 92.8 2.3 5.1E-05 29.6 11.2 84 41-127 114-206 (219)
145 PRK07649 para-aminobenzoate/an 92.7 0.24 5.2E-06 34.1 4.3 51 28-79 2-52 (195)
146 PRK05096 guanosine 5'-monophos 92.5 1 2.2E-05 33.7 7.5 55 69-124 121-176 (346)
147 cd06533 Glyco_transf_WecG_TagA 92.3 2.4 5.2E-05 28.5 9.1 69 25-96 46-123 (171)
148 PRK08007 para-aminobenzoate sy 92.2 0.57 1.2E-05 31.9 5.7 77 28-106 2-80 (187)
149 TIGR03151 enACPred_II putative 92.2 3.6 7.8E-05 30.4 10.8 83 41-126 101-189 (307)
150 PRK06559 nicotinate-nucleotide 92.2 2.2 4.8E-05 31.3 8.9 92 27-125 169-267 (290)
151 PRK05637 anthranilate synthase 92.1 1.6 3.6E-05 30.3 7.9 79 26-106 2-81 (208)
152 PLN02335 anthranilate synthase 92.1 1.1 2.4E-05 31.4 7.2 81 25-106 18-99 (222)
153 PRK06774 para-aminobenzoate sy 92.1 0.34 7.4E-06 33.1 4.4 75 28-106 2-80 (191)
154 PF01081 Aldolase: KDPG and KH 92.1 1 2.2E-05 31.1 6.7 59 75-135 36-94 (196)
155 TIGR00262 trpA tryptophan synt 92.0 1.1 2.5E-05 32.2 7.1 58 84-141 73-136 (256)
156 PRK06543 nicotinate-nucleotide 91.9 3.8 8.3E-05 30.0 10.0 94 26-126 160-264 (281)
157 TIGR00343 pyridoxal 5'-phospha 91.8 3.9 8.4E-05 29.9 9.9 59 84-143 184-249 (287)
158 COG2022 ThiG Uncharacterized e 91.8 3.5 7.6E-05 29.3 9.7 96 42-140 123-229 (262)
159 TIGR01579 MiaB-like-C MiaB-lik 91.7 3.1 6.7E-05 32.0 9.7 95 33-140 8-106 (414)
160 cd04727 pdxS PdxS is a subunit 91.7 4 8.8E-05 29.8 10.1 87 54-143 118-246 (283)
161 TIGR01303 IMP_DH_rel_1 IMP deh 91.6 1.9 4.2E-05 33.9 8.6 68 56-125 224-292 (475)
162 COG0742 N6-adenine-specific me 91.6 1.2 2.6E-05 30.6 6.5 53 26-78 67-122 (187)
163 PRK13111 trpA tryptophan synth 91.6 1.2 2.5E-05 32.2 6.8 58 84-141 75-138 (258)
164 PRK15320 transcriptional activ 91.6 2 4.3E-05 29.9 7.5 98 27-127 3-102 (251)
165 COG4122 Predicted O-methyltran 91.4 3.7 8E-05 28.9 9.0 57 25-82 84-144 (219)
166 PLN02274 inosine-5'-monophosph 91.4 1.9 4E-05 34.3 8.3 66 59-126 250-316 (505)
167 PRK00278 trpC indole-3-glycero 91.3 4.2 9.1E-05 29.3 13.1 100 35-136 146-254 (260)
168 TIGR00642 mmCoA_mut_beta methy 91.3 5 0.00011 32.8 10.6 113 25-142 494-616 (619)
169 PRK07807 inosine 5-monophospha 91.3 1.3 2.8E-05 34.9 7.3 67 57-125 227-294 (479)
170 PRK05670 anthranilate synthase 91.1 1.2 2.7E-05 30.2 6.4 78 28-106 2-80 (189)
171 PRK06552 keto-hydroxyglutarate 91.1 3.9 8.6E-05 28.6 9.0 93 43-136 8-103 (213)
172 TIGR01182 eda Entner-Doudoroff 90.7 4.2 9.2E-05 28.3 9.1 43 82-125 43-85 (204)
173 PRK09490 metH B12-dependent me 90.7 10 0.00022 33.6 12.5 99 26-125 752-862 (1229)
174 TIGR01302 IMP_dehydrog inosine 90.6 2 4.3E-05 33.5 7.7 64 59-125 227-291 (450)
175 PF04131 NanE: Putative N-acet 90.5 2.5 5.4E-05 29.0 7.2 70 49-124 45-116 (192)
176 PRK09140 2-dehydro-3-deoxy-6-p 90.5 4.4 9.6E-05 28.1 9.6 60 75-135 38-97 (206)
177 PRK06096 molybdenum transport 90.5 2.7 5.8E-05 30.8 7.8 96 27-126 159-263 (284)
178 PF00478 IMPDH: IMP dehydrogen 90.1 2.5 5.4E-05 31.9 7.6 67 58-126 109-176 (352)
179 cd01568 QPRTase_NadC Quinolina 90.1 4.3 9.3E-05 29.5 8.6 94 27-125 153-253 (269)
180 cd00381 IMPDH IMPDH: The catal 90.0 3.4 7.5E-05 30.8 8.3 65 60-126 97-162 (325)
181 PRK14329 (dimethylallyl)adenos 89.9 3.7 8E-05 32.2 8.7 98 31-141 33-138 (467)
182 PF02581 TMP-TENI: Thiamine mo 89.8 4.5 9.7E-05 27.3 9.2 70 52-125 99-175 (180)
183 CHL00101 trpG anthranilate syn 89.7 1.7 3.7E-05 29.7 6.1 50 28-78 2-51 (190)
184 cd04724 Tryptophan_synthase_al 89.7 2.8 6.1E-05 29.8 7.4 56 85-141 64-125 (242)
185 COG5012 Predicted cobalamin bi 89.2 2.9 6.3E-05 29.5 6.8 86 38-125 121-211 (227)
186 PRK05567 inosine 5'-monophosph 89.1 3.3 7.2E-05 32.7 8.0 65 59-125 230-295 (486)
187 PRK04148 hypothetical protein; 88.7 1.2 2.6E-05 28.9 4.4 98 25-133 17-114 (134)
188 COG0421 SpeE Spermidine syntha 88.5 6 0.00013 29.0 8.4 76 25-102 100-186 (282)
189 PRK04302 triosephosphate isome 88.5 6.7 0.00015 27.5 13.6 93 44-138 109-218 (223)
190 PRK03958 tRNA 2'-O-methylase; 88.4 6 0.00013 26.8 9.5 56 27-82 33-91 (176)
191 TIGR03088 stp2 sugar transfera 88.4 8.6 0.00019 28.6 9.7 107 25-143 229-337 (374)
192 PRK06106 nicotinate-nucleotide 88.3 8.2 0.00018 28.3 9.3 92 27-125 166-264 (281)
193 cd05212 NAD_bind_m-THF_DH_Cycl 88.3 3.7 8E-05 26.7 6.6 54 23-82 26-83 (140)
194 TIGR00736 nifR3_rel_arch TIM-b 88.1 7.6 0.00016 27.6 11.3 65 60-125 152-218 (231)
195 PF04321 RmlD_sub_bind: RmlD s 88.0 1.5 3.2E-05 31.9 5.1 54 26-80 1-61 (286)
196 PRK00811 spermidine synthase; 87.8 8.7 0.00019 28.0 10.0 68 26-95 101-180 (283)
197 PF01729 QRPTase_C: Quinolinat 87.8 4.1 8.9E-05 27.4 6.8 72 70-142 49-122 (169)
198 PRK06895 putative anthranilate 87.8 1.4 2.9E-05 30.1 4.6 77 26-106 2-80 (190)
199 CHL00162 thiG thiamin biosynth 87.6 8.7 0.00019 27.8 12.9 98 42-143 130-239 (267)
200 PTZ00314 inosine-5'-monophosph 87.5 5.1 0.00011 31.8 8.1 56 69-125 252-308 (495)
201 PRK13125 trpA tryptophan synth 87.5 8.3 0.00018 27.4 11.3 99 26-127 102-214 (244)
202 TIGR00696 wecB_tagA_cpsF bacte 87.3 7.1 0.00015 26.5 9.0 70 24-96 47-124 (177)
203 PRK06015 keto-hydroxyglutarate 87.3 7.8 0.00017 26.9 8.7 23 30-52 10-32 (201)
204 cd00564 TMP_TenI Thiamine mono 87.2 6.9 0.00015 26.2 9.4 69 54-126 101-177 (196)
205 PRK11359 cyclic-di-GMP phospho 87.0 16 0.00035 30.3 11.1 101 39-141 681-794 (799)
206 PRK13566 anthranilate synthase 87.0 4.3 9.2E-05 33.8 7.6 79 24-106 525-606 (720)
207 PF03808 Glyco_tran_WecB: Glyc 87.0 7.2 0.00016 26.2 9.6 71 25-98 48-127 (172)
208 COG0157 NadC Nicotinate-nucleo 86.9 5.6 0.00012 29.0 7.3 70 71-141 158-229 (280)
209 PLN02591 tryptophan synthase 86.9 4.5 9.8E-05 29.1 6.9 61 84-145 65-131 (250)
210 PLN02889 oxo-acid-lyase/anthra 86.8 7.4 0.00016 33.3 8.9 80 25-105 81-169 (918)
211 PRK09522 bifunctional glutamin 86.8 2.7 5.8E-05 33.6 6.2 53 26-79 2-57 (531)
212 PRK09016 quinolinate phosphori 86.8 11 0.00023 27.9 9.1 93 27-126 181-279 (296)
213 PLN02366 spermidine synthase 86.7 11 0.00024 28.0 9.7 69 26-95 116-195 (308)
214 cd01948 EAL EAL domain. This d 86.7 6.1 0.00013 27.3 7.6 89 41-131 137-238 (240)
215 PRK14331 (dimethylallyl)adenos 86.3 7 0.00015 30.4 8.2 96 33-141 12-115 (437)
216 smart00052 EAL Putative diguan 86.0 9.2 0.0002 26.4 8.4 90 40-131 137-239 (241)
217 PLN02589 caffeoyl-CoA O-methyl 85.8 11 0.00024 27.1 9.8 54 26-79 105-165 (247)
218 COG2109 BtuR ATP:corrinoid ade 85.7 9.1 0.0002 26.4 7.5 52 61-113 114-170 (198)
219 CHL00200 trpA tryptophan synth 85.7 4.9 0.00011 29.1 6.7 56 84-140 78-139 (263)
220 PF14606 Lipase_GDSL_3: GDSL-l 85.6 2.4 5.2E-05 28.8 4.7 60 47-107 31-102 (178)
221 PRK14974 cell division protein 85.6 13 0.00029 27.9 11.8 101 25-126 168-286 (336)
222 PRK11889 flhF flagellar biosyn 85.4 16 0.00034 28.5 12.5 102 25-126 269-384 (436)
223 KOG1562 Spermidine synthase [A 85.4 7 0.00015 29.0 7.2 62 27-89 147-214 (337)
224 TIGR00007 phosphoribosylformim 85.3 10 0.00023 26.4 8.4 68 57-126 146-217 (230)
225 PRK05703 flhF flagellar biosyn 85.2 16 0.00034 28.4 12.1 102 25-126 251-364 (424)
226 PRK10537 voltage-gated potassi 85.2 10 0.00022 29.2 8.5 95 26-126 241-355 (393)
227 PF10727 Rossmann-like: Rossma 85.2 5.6 0.00012 25.5 6.1 100 22-124 7-123 (127)
228 PRK04180 pyridoxal biosynthesi 85.2 7.3 0.00016 28.6 7.2 61 83-144 189-256 (293)
229 PLN02871 UDP-sulfoquinovose:DA 85.1 16 0.00035 28.4 11.1 107 25-143 290-399 (465)
230 PF00448 SRP54: SRP54-type pro 84.8 10 0.00023 26.0 8.4 100 25-125 29-146 (196)
231 cd00561 CobA_CobO_BtuR ATP:cor 84.6 9.6 0.00021 25.4 7.5 44 69-113 94-142 (159)
232 PF01564 Spermine_synth: Sperm 84.6 8.2 0.00018 27.6 7.3 77 26-103 101-188 (246)
233 PRK12727 flagellar biosynthesi 84.6 15 0.00032 29.7 9.2 87 26-112 381-473 (559)
234 cd04824 eu_ALAD_PBGS_cysteine_ 84.5 6.6 0.00014 29.2 6.8 66 55-123 221-288 (320)
235 COG1737 RpiR Transcriptional r 84.5 13 0.00029 27.0 9.6 87 25-114 132-220 (281)
236 PF04131 NanE: Putative N-acet 84.4 11 0.00024 26.0 10.5 86 38-127 81-173 (192)
237 PRK08072 nicotinate-nucleotide 84.4 14 0.0003 27.1 10.4 92 27-126 160-259 (277)
238 PRK14098 glycogen synthase; Pr 84.2 16 0.00035 28.8 9.5 111 25-142 336-449 (489)
239 KOG2550 IMP dehydrogenase/GMP 84.2 6.3 0.00014 30.5 6.7 66 57-124 251-317 (503)
240 PRK07896 nicotinate-nucleotide 84.2 4.6 9.9E-05 29.7 5.9 69 71-141 170-240 (289)
241 cd04726 KGPDC_HPS 3-Keto-L-gul 84.0 11 0.00024 25.6 11.7 86 37-126 91-185 (202)
242 PLN02476 O-methyltransferase 83.8 15 0.00032 26.9 9.7 66 27-94 145-216 (278)
243 PLN02716 nicotinate-nucleotide 83.8 16 0.00034 27.2 9.8 97 27-126 172-289 (308)
244 TIGR01306 GMP_reduct_2 guanosi 83.7 11 0.00023 28.3 7.8 56 71-127 109-165 (321)
245 PRK12724 flagellar biosynthesi 83.7 19 0.00041 28.1 11.7 100 25-126 252-366 (432)
246 PRK06731 flhF flagellar biosyn 83.6 15 0.00032 26.8 12.0 101 26-126 104-218 (270)
247 COG3967 DltE Short-chain dehyd 83.6 13 0.00028 26.2 8.0 79 26-105 6-85 (245)
248 PRK14328 (dimethylallyl)adenos 83.6 14 0.00031 28.7 8.8 99 32-142 12-119 (439)
249 PRK01372 ddl D-alanine--D-alan 83.6 5.5 0.00012 29.0 6.3 41 36-77 23-63 (304)
250 PRK07414 cob(I)yrinic acid a,c 83.5 6.6 0.00014 26.8 6.1 44 69-113 114-162 (178)
251 COG0621 MiaB 2-methylthioadeni 83.5 10 0.00022 29.6 7.8 100 32-143 13-116 (437)
252 PRK05986 cob(I)alamin adenolsy 83.4 6.7 0.00014 27.0 6.2 50 63-114 109-163 (191)
253 PRK08857 para-aminobenzoate sy 83.4 5.2 0.00011 27.3 5.7 49 28-78 2-51 (193)
254 PRK14326 (dimethylallyl)adenos 83.2 21 0.00046 28.4 10.9 98 31-142 23-129 (502)
255 TIGR00089 RNA modification enz 82.9 15 0.00032 28.5 8.7 96 33-141 11-112 (429)
256 COG2200 Rtn c-di-GMP phosphodi 82.7 15 0.00033 26.3 10.3 102 37-140 137-251 (256)
257 TIGR00708 cobA cob(I)alamin ad 82.5 11 0.00025 25.5 7.0 45 69-114 96-145 (173)
258 PRK06559 nicotinate-nucleotide 82.4 7.5 0.00016 28.6 6.4 69 71-141 167-238 (290)
259 PRK14333 (dimethylallyl)adenos 82.4 15 0.00034 28.6 8.6 97 31-141 16-121 (448)
260 PF00977 His_biosynth: Histidi 82.4 15 0.00032 25.9 8.1 70 56-126 147-219 (229)
261 PRK07455 keto-hydroxyglutarate 82.3 13 0.00029 25.3 8.0 64 55-124 112-177 (187)
262 PF03060 NMO: Nitronate monoox 82.1 19 0.00041 26.9 10.6 81 42-125 129-217 (330)
263 PRK00994 F420-dependent methyl 81.8 8.4 0.00018 27.6 6.2 62 66-130 57-118 (277)
264 PRK06978 nicotinate-nucleotide 81.6 5.9 0.00013 29.2 5.7 69 71-141 176-246 (294)
265 PF06283 ThuA: Trehalose utili 81.6 11 0.00023 26.2 6.9 53 27-81 1-63 (217)
266 PRK07315 fructose-bisphosphate 81.5 17 0.00036 26.9 8.0 68 55-124 153-229 (293)
267 PLN02823 spermine synthase 81.4 20 0.00044 27.0 8.6 67 26-94 128-208 (336)
268 PRK10060 RNase II stability mo 81.4 29 0.00062 28.6 11.4 105 36-142 541-658 (663)
269 PF07652 Flavi_DEAD: Flaviviru 81.3 5.9 0.00013 26.1 5.1 84 24-108 32-136 (148)
270 PRK14722 flhF flagellar biosyn 81.2 22 0.00048 27.2 10.3 89 26-114 168-263 (374)
271 PF00290 Trp_syntA: Tryptophan 81.2 6.4 0.00014 28.5 5.7 49 84-132 73-127 (259)
272 PRK14723 flhF flagellar biosyn 81.2 32 0.0007 29.0 11.0 101 26-126 216-330 (767)
273 TIGR00064 ftsY signal recognit 81.1 19 0.0004 26.2 11.0 102 24-126 99-224 (272)
274 PF10672 Methyltrans_SAM: S-ad 80.8 12 0.00027 27.4 7.2 52 27-78 148-203 (286)
275 COG0159 TrpA Tryptophan syntha 80.7 10 0.00023 27.5 6.6 59 86-145 82-146 (265)
276 PRK13143 hisH imidazole glycer 80.6 8.4 0.00018 26.5 6.0 44 26-76 1-44 (200)
277 PRK14337 (dimethylallyl)adenos 80.3 26 0.00056 27.4 10.0 96 32-141 14-117 (446)
278 TIGR03128 RuMP_HxlA 3-hexulose 80.3 16 0.00034 25.0 7.3 90 55-145 8-101 (206)
279 cd04723 HisA_HisF Phosphoribos 80.3 18 0.00039 25.5 8.2 67 58-126 148-217 (233)
280 PF02572 CobA_CobO_BtuR: ATP:c 80.2 14 0.0003 25.0 6.7 46 69-115 95-145 (172)
281 PF05582 Peptidase_U57: YabG p 80.1 21 0.00045 26.2 9.3 98 24-123 104-223 (287)
282 PLN02778 3,5-epimerase/4-reduc 80.1 13 0.00029 27.1 7.2 55 21-76 5-63 (298)
283 PRK07114 keto-hydroxyglutarate 80.0 18 0.0004 25.5 9.9 72 52-126 20-97 (222)
284 PRK06978 nicotinate-nucleotide 80.0 22 0.00047 26.3 10.4 93 27-126 178-276 (294)
285 PRK09016 quinolinate phosphori 79.9 13 0.00028 27.5 6.9 69 71-141 179-249 (296)
286 TIGR01574 miaB-methiolase tRNA 79.8 23 0.00049 27.6 8.7 96 33-142 11-116 (438)
287 cd04726 KGPDC_HPS 3-Keto-L-gul 79.8 11 0.00024 25.7 6.4 24 113-136 96-121 (202)
288 PF11072 DUF2859: Protein of u 79.8 14 0.00031 24.1 8.3 68 27-103 64-136 (142)
289 PRK05282 (alpha)-aspartyl dipe 79.6 19 0.00042 25.6 8.8 62 26-94 32-99 (233)
290 PRK00748 1-(5-phosphoribosyl)- 79.6 18 0.00039 25.2 8.4 67 58-126 148-219 (233)
291 PRK05742 nicotinate-nucleotide 79.6 22 0.00047 26.1 10.4 92 27-126 162-260 (277)
292 PF01380 SIS: SIS domain SIS d 79.3 12 0.00027 23.1 6.3 98 27-132 7-109 (131)
293 PRK12723 flagellar biosynthesi 79.2 27 0.00058 26.9 12.1 102 25-126 206-319 (388)
294 cd03825 GT1_wcfI_like This fam 79.1 15 0.00033 26.7 7.4 74 27-104 2-82 (365)
295 PRK03692 putative UDP-N-acetyl 79.0 21 0.00046 25.6 9.2 70 24-96 104-181 (243)
296 PF14097 SpoVAE: Stage V sporu 78.8 17 0.00038 24.5 10.6 80 28-109 3-96 (180)
297 PRK10742 putative methyltransf 78.8 22 0.00047 25.7 8.6 97 25-127 110-218 (250)
298 PRK14607 bifunctional glutamin 78.7 5.1 0.00011 32.1 5.0 51 27-78 1-52 (534)
299 PRK07695 transcriptional regul 78.7 18 0.0004 24.7 10.8 86 54-143 101-198 (201)
300 PLN02522 ATP citrate (pro-S)-l 78.6 35 0.00077 28.0 12.1 113 27-143 169-315 (608)
301 cd06358 PBP1_NHase Type I peri 78.6 24 0.00051 25.9 10.0 82 27-111 134-226 (333)
302 PRK05848 nicotinate-nucleotide 78.5 14 0.00029 27.0 6.7 69 71-141 152-223 (273)
303 PF13941 MutL: MutL protein 78.4 31 0.00068 27.2 11.9 102 25-127 76-185 (457)
304 cd04730 NPD_like 2-Nitropropan 78.2 20 0.00044 25.0 11.5 82 43-127 96-185 (236)
305 PRK12704 phosphodiesterase; Pr 77.7 4.6 9.9E-05 32.3 4.4 44 100-143 251-296 (520)
306 TIGR00875 fsa_talC_mipB fructo 77.6 22 0.00047 25.0 9.2 82 44-128 96-186 (213)
307 TIGR01815 TrpE-clade3 anthrani 77.6 15 0.00032 30.7 7.4 53 23-77 514-566 (717)
308 PF02887 PK_C: Pyruvate kinase 77.6 4.6 0.0001 25.1 3.7 66 70-141 16-83 (117)
309 TIGR03765 ICE_PFL_4695 integra 77.5 14 0.00031 22.8 7.7 68 27-103 26-98 (105)
310 TIGR01334 modD putative molybd 77.1 18 0.00039 26.5 7.0 54 86-141 176-229 (277)
311 cd01743 GATase1_Anthranilate_S 77.0 12 0.00026 25.2 5.9 49 28-77 1-49 (184)
312 PRK01362 putative translaldola 77.0 23 0.00049 24.9 9.2 81 44-125 96-183 (214)
313 TIGR00734 hisAF_rel hisA/hisF 76.9 23 0.0005 24.9 8.4 69 56-126 141-212 (221)
314 PRK03612 spermidine synthase; 76.8 37 0.00079 27.2 9.3 68 26-95 322-404 (521)
315 cd06388 PBP1_iGluR_AMPA_GluR4 76.6 28 0.0006 26.4 8.2 58 40-100 142-206 (371)
316 PRK12290 thiE thiamine-phospha 76.5 35 0.00075 26.8 10.5 88 54-144 306-414 (437)
317 PRK12726 flagellar biosynthesi 76.5 33 0.00072 26.6 10.5 102 25-126 234-349 (407)
318 PRK13146 hisH imidazole glycer 76.5 13 0.00029 25.7 6.0 44 26-76 2-47 (209)
319 PF00117 GATase: Glutamine ami 76.5 20 0.00044 24.1 7.3 76 29-105 1-79 (192)
320 PRK08072 nicotinate-nucleotide 76.4 16 0.00036 26.7 6.7 69 71-140 158-228 (277)
321 PRK10538 malonic semialdehyde 76.2 24 0.00051 24.7 8.6 78 26-103 1-79 (248)
322 PRK13170 hisH imidazole glycer 76.1 15 0.00032 25.2 6.1 44 26-76 1-44 (196)
323 PRK13587 1-(5-phosphoribosyl)- 75.9 25 0.00055 24.9 8.3 66 59-126 151-220 (234)
324 COG1927 Mtd Coenzyme F420-depe 75.8 25 0.00053 24.8 6.9 59 69-128 59-117 (277)
325 cd06341 PBP1_ABC_ligand_bindin 75.7 29 0.00063 25.4 9.9 74 37-113 149-229 (341)
326 COG0626 MetC Cystathionine bet 75.7 34 0.00073 26.5 8.4 95 27-125 104-205 (396)
327 PLN02781 Probable caffeoyl-CoA 75.6 26 0.00055 24.8 10.1 54 26-79 94-153 (234)
328 KOG4175 Tryptophan synthase al 75.5 20 0.00044 25.1 6.5 47 89-135 86-138 (268)
329 PRK07003 DNA polymerase III su 75.4 12 0.00027 31.5 6.3 72 70-143 119-192 (830)
330 PF03808 Glyco_tran_WecB: Glyc 75.3 22 0.00047 23.8 9.1 83 35-118 34-123 (172)
331 TIGR02855 spore_yabG sporulati 75.2 30 0.00064 25.4 9.7 97 25-123 104-222 (283)
332 TIGR03499 FlhF flagellar biosy 75.2 19 0.00041 26.2 6.8 53 26-78 225-280 (282)
333 cd08187 BDH Butanol dehydrogen 75.2 34 0.00074 26.0 9.8 63 26-92 29-105 (382)
334 PRK04128 1-(5-phosphoribosyl)- 75.1 26 0.00057 24.7 7.4 66 57-126 144-210 (228)
335 PRK14330 (dimethylallyl)adenos 74.8 38 0.00082 26.3 8.9 97 32-142 11-113 (434)
336 PRK06806 fructose-bisphosphate 74.6 31 0.00067 25.3 8.4 69 54-124 151-227 (281)
337 PRK04457 spermidine synthase; 74.5 29 0.00064 25.0 11.0 69 25-95 90-166 (262)
338 PF00218 IGPS: Indole-3-glycer 74.5 30 0.00065 25.0 9.7 87 39-127 148-238 (254)
339 PRK07765 para-aminobenzoate sy 74.4 9 0.0002 26.7 4.8 79 26-106 1-84 (214)
340 cd03823 GT1_ExpE7_like This fa 74.4 29 0.00064 24.9 11.3 66 71-143 263-328 (359)
341 TIGR00308 TRM1 tRNA(guanine-26 74.3 37 0.0008 26.0 10.4 82 26-112 70-153 (374)
342 TIGR03471 HpnJ hopanoid biosyn 74.3 29 0.00063 27.2 8.0 91 35-131 34-130 (472)
343 cd03813 GT1_like_3 This family 74.3 40 0.00086 26.4 10.7 107 25-143 324-441 (475)
344 PRK02615 thiamine-phosphate py 74.1 36 0.00078 25.8 10.9 86 54-143 246-343 (347)
345 cd01572 QPRTase Quinolinate ph 73.8 15 0.00033 26.7 5.9 70 71-141 152-223 (268)
346 PRK06512 thiamine-phosphate py 73.6 29 0.00062 24.4 10.1 85 55-143 118-213 (221)
347 cd06338 PBP1_ABC_ligand_bindin 73.6 33 0.00072 25.1 11.8 68 37-107 157-231 (345)
348 COG0269 SgbH 3-hexulose-6-phos 73.6 29 0.00063 24.5 12.4 117 26-144 84-214 (217)
349 PRK09776 putative diguanylate 73.5 26 0.00057 30.2 8.2 100 38-139 976-1088(1092)
350 cd01844 SGNH_hydrolase_like_6 73.4 13 0.00029 24.6 5.3 39 69-107 56-102 (177)
351 cd01573 modD_like ModD; Quinol 73.3 21 0.00045 26.0 6.5 53 86-140 171-223 (272)
352 cd06346 PBP1_ABC_ligand_bindin 73.2 33 0.00071 24.9 12.7 70 39-111 155-231 (312)
353 KOG1203 Predicted dehydrogenas 73.2 39 0.00085 26.3 8.2 74 23-97 77-151 (411)
354 PLN02898 HMP-P kinase/thiamin- 73.1 45 0.00098 26.5 9.9 86 54-143 396-496 (502)
355 PRK14340 (dimethylallyl)adenos 72.9 43 0.00094 26.2 8.8 96 32-141 17-121 (445)
356 cd06329 PBP1_SBP_like_3 Peripl 72.9 35 0.00076 25.1 11.2 77 26-105 144-234 (342)
357 PF09456 RcsC: RcsC Alpha-Beta 72.9 14 0.00031 22.3 4.7 90 28-141 2-91 (92)
358 PRK06096 molybdenum transport 72.9 23 0.0005 26.0 6.7 54 86-141 177-230 (284)
359 PF03102 NeuB: NeuB family; I 72.8 32 0.00069 24.6 7.9 86 34-124 54-143 (241)
360 TIGR01578 MiaB-like-B MiaB-lik 72.8 36 0.00077 26.4 8.1 95 33-141 11-108 (420)
361 TIGR01037 pyrD_sub1_fam dihydr 72.7 21 0.00045 26.1 6.6 56 87-143 224-285 (300)
362 PRK08999 hypothetical protein; 72.6 35 0.00076 25.0 8.6 67 54-124 232-305 (312)
363 COG2265 TrmA SAM-dependent met 72.6 44 0.00096 26.2 9.7 95 25-124 315-413 (432)
364 PF01993 MTD: methylene-5,6,7, 72.5 12 0.00027 26.8 5.0 61 69-131 58-118 (276)
365 PRK07428 nicotinate-nucleotide 72.5 27 0.00058 25.8 6.9 70 71-141 166-237 (288)
366 PRK08649 inosine 5-monophospha 72.3 41 0.0009 25.7 11.7 66 57-126 142-214 (368)
367 cd01833 XynB_like SGNH_hydrola 72.2 4.4 9.6E-05 26.2 2.7 38 69-106 39-87 (157)
368 COG2519 GCD14 tRNA(1-methylade 72.2 23 0.0005 25.6 6.4 76 27-108 121-198 (256)
369 cd05014 SIS_Kpsf KpsF-like pro 71.9 21 0.00045 22.1 6.7 87 35-129 12-100 (128)
370 PRK11557 putative DNA-binding 71.9 34 0.00074 24.6 9.4 84 27-113 130-217 (278)
371 cd04731 HisF The cyclase subun 71.8 32 0.0007 24.2 8.4 71 55-127 26-100 (243)
372 PRK06106 nicotinate-nucleotide 71.8 30 0.00065 25.4 7.0 69 71-141 164-235 (281)
373 TIGR01761 thiaz-red thiazoliny 71.7 41 0.00089 25.4 10.8 104 25-143 3-113 (343)
374 COG1091 RfbD dTDP-4-dehydrorha 71.7 19 0.0004 26.5 5.9 52 27-80 2-60 (281)
375 COG1748 LYS9 Saccharopine dehy 71.6 45 0.00097 25.8 10.1 92 26-123 2-95 (389)
376 TIGR01361 DAHP_synth_Bsub phos 71.5 33 0.00073 24.8 7.2 66 58-124 148-226 (260)
377 PF00919 UPF0004: Uncharacteri 71.1 20 0.00044 21.7 6.8 61 33-105 11-76 (98)
378 cd01568 QPRTase_NadC Quinolina 71.1 32 0.0007 24.9 7.1 70 71-141 151-222 (269)
379 cd08185 Fe-ADH1 Iron-containin 71.0 44 0.00095 25.4 9.4 64 26-93 26-103 (380)
380 PRK13125 trpA tryptophan synth 71.0 31 0.00066 24.5 6.9 53 87-140 64-124 (244)
381 PLN00060 meiotic recombination 71.0 26 0.00057 26.9 6.8 19 27-45 213-231 (384)
382 COG1411 Uncharacterized protei 70.9 33 0.00072 24.0 7.1 72 54-126 135-209 (229)
383 cd01080 NAD_bind_m-THF_DH_Cycl 70.7 29 0.00063 23.3 7.0 56 24-82 43-99 (168)
384 PRK08385 nicotinate-nucleotide 70.7 30 0.00064 25.4 6.8 54 87-142 171-224 (278)
385 TIGR00078 nadC nicotinate-nucl 70.6 38 0.00082 24.6 9.7 91 27-125 150-248 (265)
386 PRK07764 DNA polymerase III su 70.4 27 0.00058 29.8 7.3 73 69-143 119-193 (824)
387 PRK14961 DNA polymerase III su 70.4 32 0.00068 26.1 7.2 72 70-143 119-192 (363)
388 PLN00141 Tic62-NAD(P)-related 70.4 34 0.00075 24.0 7.4 35 20-54 12-46 (251)
389 PF00563 EAL: EAL domain; Int 70.4 8.8 0.00019 26.4 4.0 83 39-124 138-228 (236)
390 COG1908 FrhD Coenzyme F420-red 70.2 15 0.00033 23.3 4.5 52 76-127 6-60 (132)
391 PRK14336 (dimethylallyl)adenos 70.2 38 0.00082 26.2 7.7 94 32-138 12-113 (418)
392 TIGR01859 fruc_bis_ald_ fructo 70.1 40 0.00087 24.7 7.5 68 55-124 152-227 (282)
393 PF13578 Methyltransf_24: Meth 70.0 16 0.00035 21.9 4.7 66 26-93 24-92 (106)
394 PRK04128 1-(5-phosphoribosyl)- 69.9 36 0.00078 24.0 8.0 69 56-127 30-102 (228)
395 PRK07413 hypothetical protein; 69.8 21 0.00045 27.4 6.1 49 64-114 120-173 (382)
396 TIGR02320 PEP_mutase phosphoen 69.7 23 0.00049 26.1 6.1 85 57-141 167-254 (285)
397 PF13659 Methyltransf_26: Meth 69.7 19 0.00041 21.8 5.1 54 26-80 24-80 (117)
398 cd06342 PBP1_ABC_LIVBP_like Ty 69.4 41 0.00088 24.4 11.8 72 38-112 152-230 (334)
399 cd02911 arch_FMN Archeal FMN-b 69.4 37 0.00081 24.0 11.5 87 35-125 125-218 (233)
400 KOG0189 Phosphoadenosine phosp 69.2 12 0.00026 26.2 4.3 82 39-120 36-121 (261)
401 cd06348 PBP1_ABC_ligand_bindin 69.0 43 0.00093 24.6 11.1 64 36-102 152-222 (344)
402 PRK14325 (dimethylallyl)adenos 69.0 53 0.0011 25.6 10.2 97 32-141 14-118 (444)
403 cd00331 IGPS Indole-3-glycerol 68.9 35 0.00077 23.6 12.9 80 45-126 117-200 (217)
404 TIGR01425 SRP54_euk signal rec 68.9 54 0.0012 25.7 10.5 82 25-107 128-223 (429)
405 PRK11840 bifunctional sulfur c 68.8 47 0.001 25.0 13.3 92 47-142 195-298 (326)
406 PRK06543 nicotinate-nucleotide 68.7 28 0.00061 25.6 6.3 69 71-141 159-234 (281)
407 PRK01581 speE spermidine synth 68.7 51 0.0011 25.3 9.1 69 26-96 175-258 (374)
408 PRK07107 inosine 5-monophospha 68.6 47 0.001 26.6 8.0 56 69-126 253-311 (502)
409 PRK06801 hypothetical protein; 68.6 45 0.00097 24.6 7.8 68 55-124 155-230 (286)
410 cd05013 SIS_RpiR RpiR-like pro 68.5 26 0.00055 21.7 10.0 84 27-112 15-101 (139)
411 PLN02260 probable rhamnose bio 68.4 32 0.0007 28.2 7.4 56 21-77 376-435 (668)
412 PRK15128 23S rRNA m(5)C1962 me 68.4 45 0.00098 25.7 7.7 52 27-78 245-301 (396)
413 PF04309 G3P_antiterm: Glycero 68.1 5.9 0.00013 26.9 2.6 61 58-124 106-166 (175)
414 TIGR03590 PseG pseudaminic aci 68.1 43 0.00094 24.2 8.5 61 42-108 46-113 (279)
415 PRK01033 imidazole glycerol ph 68.0 42 0.00091 24.1 8.4 66 58-125 154-224 (258)
416 PRK09496 trkA potassium transp 68.0 54 0.0012 25.3 9.6 96 25-125 23-122 (453)
417 PRK05742 nicotinate-nucleotide 68.0 38 0.00082 24.8 6.9 68 71-140 160-229 (277)
418 PRK05286 dihydroorotate dehydr 67.9 50 0.0011 24.9 8.2 58 86-143 276-341 (344)
419 COG0118 HisH Glutamine amidotr 67.9 19 0.00041 25.1 5.0 35 26-60 2-36 (204)
420 PF02602 HEM4: Uroporphyrinoge 67.9 26 0.00057 24.2 6.0 100 26-135 118-230 (231)
421 PRK03522 rumB 23S rRNA methylu 67.8 47 0.001 24.6 10.2 74 26-105 196-273 (315)
422 PRK09283 delta-aminolevulinic 67.6 36 0.00078 25.5 6.7 65 55-123 224-290 (323)
423 cd04962 GT1_like_5 This family 67.6 46 0.001 24.4 11.5 106 26-143 228-335 (371)
424 PRK06552 keto-hydroxyglutarate 67.5 40 0.00086 23.6 8.8 79 40-124 100-180 (213)
425 TIGR00078 nadC nicotinate-nucl 67.4 43 0.00093 24.3 7.1 70 71-141 148-219 (265)
426 COG0800 Eda 2-keto-3-deoxy-6-p 67.1 41 0.00089 23.6 10.0 78 52-132 18-97 (211)
427 cd04823 ALAD_PBGS_aspartate_ri 67.0 38 0.00083 25.3 6.7 65 56-124 222-288 (320)
428 PRK02083 imidazole glycerol ph 67.0 43 0.00094 23.8 10.4 79 59-139 156-245 (253)
429 PRK15484 lipopolysaccharide 1, 66.9 53 0.0011 24.8 12.9 94 40-143 247-343 (380)
430 TIGR02085 meth_trns_rumB 23S r 66.9 55 0.0012 25.0 10.3 88 26-119 256-346 (374)
431 PRK06444 prephenate dehydrogen 66.7 22 0.00048 24.6 5.3 28 26-53 1-28 (197)
432 PF02662 FlpD: Methyl-viologen 66.7 29 0.00063 22.0 5.5 47 81-127 10-59 (124)
433 cd06292 PBP1_LacI_like_10 Liga 66.6 42 0.0009 23.5 8.5 9 71-79 84-92 (273)
434 PRK14327 (dimethylallyl)adenos 66.5 51 0.0011 26.4 7.8 97 32-141 77-183 (509)
435 TIGR01125 MiaB-like tRNA modif 66.4 60 0.0013 25.2 8.7 92 33-140 11-108 (430)
436 cd06334 PBP1_ABC_ligand_bindin 66.3 53 0.0011 24.5 12.3 73 37-112 156-235 (351)
437 PRK14338 (dimethylallyl)adenos 65.9 54 0.0012 25.7 7.9 94 31-138 30-133 (459)
438 cd03804 GT1_wbaZ_like This fam 65.9 50 0.0011 24.2 9.4 105 26-144 222-326 (351)
439 PRK14951 DNA polymerase III su 65.9 38 0.00082 27.9 7.1 72 70-143 124-197 (618)
440 PRK12826 3-ketoacyl-(acyl-carr 65.8 41 0.00089 23.2 9.3 69 25-94 6-79 (251)
441 PRK13398 3-deoxy-7-phosphohept 65.7 49 0.0011 24.0 8.0 64 61-125 153-229 (266)
442 PRK14956 DNA polymerase III su 65.7 35 0.00075 27.2 6.7 72 70-143 121-194 (484)
443 PRK15482 transcriptional regul 65.6 49 0.0011 24.0 10.2 84 27-113 137-224 (285)
444 PF00534 Glycos_transf_1: Glyc 65.6 34 0.00074 22.1 10.9 109 24-144 46-158 (172)
445 cd01836 FeeA_FeeB_like SGNH_hy 65.5 37 0.00081 22.5 8.9 50 57-106 52-114 (191)
446 PRK08673 3-deoxy-7-phosphohept 65.3 57 0.0012 24.6 8.8 64 61-125 219-295 (335)
447 PRK14191 bifunctional 5,10-met 65.2 43 0.00093 24.7 6.7 63 24-88 156-218 (285)
448 cd00331 IGPS Indole-3-glycerol 65.0 43 0.00094 23.1 7.7 54 71-125 45-99 (217)
449 cd06349 PBP1_ABC_ligand_bindin 64.9 53 0.0011 24.1 10.6 83 29-114 140-232 (340)
450 COG3010 NanE Putative N-acetyl 64.8 47 0.001 23.4 8.1 89 49-141 127-225 (229)
451 cd06279 PBP1_LacI_like_3 Ligan 64.8 48 0.001 23.5 8.5 38 38-76 23-62 (283)
452 TIGR03061 pip_yhgE_Nterm YhgE/ 64.6 38 0.00082 22.3 7.9 51 24-76 42-102 (164)
453 PF01861 DUF43: Protein of unk 64.6 13 0.00028 26.6 3.9 53 25-78 67-120 (243)
454 PLN02316 synthase/transferase 64.4 1E+02 0.0022 27.2 11.7 113 25-143 869-997 (1036)
455 PRK08185 hypothetical protein; 64.3 55 0.0012 24.1 7.5 64 55-124 148-225 (283)
456 TIGR02397 dnaX_nterm DNA polym 64.3 54 0.0012 24.3 7.4 71 71-143 118-190 (355)
457 PRK14953 DNA polymerase III su 64.1 65 0.0014 25.6 8.0 72 70-143 119-192 (486)
458 TIGR00678 holB DNA polymerase 64.0 34 0.00074 22.9 5.8 69 70-140 96-166 (188)
459 PRK14960 DNA polymerase III su 64.0 40 0.00087 28.1 6.9 73 70-144 118-192 (702)
460 PRK14952 DNA polymerase III su 63.9 71 0.0015 26.1 8.3 72 70-143 118-191 (584)
461 cd02810 DHOD_DHPD_FMN Dihydroo 63.8 17 0.00037 26.4 4.5 40 86-125 230-270 (289)
462 TIGR00511 ribulose_e2b2 ribose 63.8 53 0.0012 24.3 7.1 80 23-107 139-226 (301)
463 cd06355 PBP1_FmdD_like Peripla 63.7 58 0.0013 24.1 9.9 70 26-98 134-214 (348)
464 TIGR00259 thylakoid_BtpA membr 63.7 54 0.0012 23.8 10.4 83 57-141 158-252 (257)
465 PRK13307 bifunctional formalde 63.4 58 0.0012 25.2 7.4 38 59-98 214-252 (391)
466 TIGR02990 ectoine_eutA ectoine 63.3 52 0.0011 23.5 8.2 73 27-102 122-210 (239)
467 PF13433 Peripla_BP_5: Peripla 63.2 45 0.00097 25.5 6.7 76 26-104 135-224 (363)
468 PRK00955 hypothetical protein; 63.2 86 0.0019 25.9 9.8 118 22-142 10-178 (620)
469 PF02882 THF_DHG_CYH_C: Tetrah 62.9 26 0.00057 23.4 4.9 56 24-82 35-91 (160)
470 COG1609 PurR Transcriptional r 62.9 61 0.0013 24.1 8.4 43 35-78 74-122 (333)
471 PRK08535 translation initiatio 62.9 61 0.0013 24.1 7.5 80 23-107 144-231 (310)
472 PRK03708 ppnK inorganic polyph 62.9 57 0.0012 23.8 10.3 88 37-144 17-112 (277)
473 PF07015 VirC1: VirC1 protein; 62.8 20 0.00043 25.5 4.5 55 24-79 29-92 (231)
474 cd06345 PBP1_ABC_ligand_bindin 62.8 59 0.0013 23.9 11.2 66 39-107 162-234 (344)
475 cd00384 ALAD_PBGS Porphobilino 62.7 56 0.0012 24.4 6.8 64 56-123 217-282 (314)
476 PRK13561 putative diguanylate 62.6 60 0.0013 26.5 7.9 103 35-138 533-647 (651)
477 PRK12656 fructose-6-phosphate 62.6 52 0.0011 23.3 8.9 82 44-126 100-188 (222)
478 PLN02819 lysine-ketoglutarate 62.4 1.1E+02 0.0024 27.0 12.8 111 23-140 567-691 (1042)
479 COG1419 FlhF Flagellar GTP-bin 62.4 73 0.0016 24.8 10.5 101 25-126 233-345 (407)
480 PRK12829 short chain dehydroge 62.3 51 0.0011 23.0 7.8 79 25-103 11-91 (264)
481 PRK05717 oxidoreductase; Valid 62.2 51 0.0011 23.0 9.6 77 18-95 3-81 (255)
482 cd04740 DHOD_1B_like Dihydroor 62.2 43 0.00093 24.4 6.4 56 86-142 220-281 (296)
483 cd08179 NADPH_BDH NADPH-depend 62.1 68 0.0015 24.4 8.9 63 26-92 24-100 (375)
484 PF02844 GARS_N: Phosphoribosy 62.1 34 0.00074 20.9 5.5 21 26-46 1-21 (100)
485 KOG0781 Signal recognition par 62.0 63 0.0014 26.0 7.3 79 25-105 406-504 (587)
486 PLN02775 Probable dihydrodipic 61.9 62 0.0013 23.9 11.6 102 26-131 12-138 (286)
487 PRK05993 short chain dehydroge 61.8 54 0.0012 23.4 6.8 9 70-78 76-84 (277)
488 cd06296 PBP1_CatR_like Ligand- 61.7 52 0.0011 22.9 8.5 19 60-79 69-87 (270)
489 cd04949 GT1_gtfA_like This fam 61.7 38 0.00082 25.1 6.2 55 84-144 291-345 (372)
490 PLN02274 inosine-5'-monophosph 61.7 83 0.0018 25.2 10.8 70 54-126 296-379 (505)
491 cd00956 Transaldolase_FSA Tran 61.7 52 0.0011 22.9 9.2 81 45-126 97-184 (211)
492 PRK13397 3-deoxy-7-phosphohept 61.5 59 0.0013 23.5 6.8 66 59-125 139-217 (250)
493 PF04413 Glycos_transf_N: 3-De 61.5 30 0.00066 23.5 5.2 56 85-140 37-92 (186)
494 PRK13307 bifunctional formalde 61.4 74 0.0016 24.6 13.4 108 32-142 259-378 (391)
495 PF00532 Peripla_BP_1: Peripla 61.4 59 0.0013 23.4 8.7 14 40-53 22-35 (279)
496 COG2518 Pcm Protein-L-isoaspar 61.3 15 0.00032 25.7 3.6 65 27-95 96-162 (209)
497 PRK14949 DNA polymerase III su 60.8 49 0.0011 28.7 7.0 72 70-143 119-192 (944)
498 KOG0989 Replication factor C, 60.8 29 0.00062 26.1 5.1 72 70-143 129-202 (346)
499 cd01572 QPRTase Quinolinate ph 60.8 62 0.0013 23.5 9.8 91 27-125 154-252 (268)
500 cd06336 PBP1_ABC_ligand_bindin 60.8 66 0.0014 23.8 10.0 68 40-110 157-232 (347)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.95 E-value=4.1e-26 Score=159.68 Aligned_cols=118 Identities=31% Similarity=0.485 Sum_probs=111.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh-cCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS-MGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~~~iv~l 104 (145)
++||++||++.....+...|+..||.|.++.++.++++.+.. . ||+|++|+.||+++|+++++++|+ ....+|||++
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~L 78 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVL 78 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEE
Confidence 479999999999999999999999999999999999999987 6 999999999999999999999995 3557899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
|+..+......++++|||||+.|||++.||..+|+.++++.
T Consensus 79 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 79 TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999998863
No 2
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.91 E-value=1.8e-22 Score=126.34 Aligned_cols=111 Identities=32% Similarity=0.498 Sum_probs=106.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCC-eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
|||+|+++..+..++..|+..|| .+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+|++++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEES
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-cCceEEEEEeeeccccccccccccccccccccEEEecC
Confidence 68999999999999999999999 89999999999999988 67999999999999999999999999889999999999
Q ss_pred CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
..+......+++.|+++|+.||++.++|..+|+
T Consensus 80 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 80 EDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp STSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999998874
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-22 Score=152.06 Aligned_cols=119 Identities=29% Similarity=0.438 Sum_probs=114.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..+||+|||++..+..+...|+..||.|..+.++.+|++.+.. ..||+|++|+.||+++|+++++.+++..+.+|+|++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-SPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 4569999999999999999999999999999999999999998 479999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+..+...+..|++.||.||+.||+++++|...++++++.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998863
No 4
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-22 Score=150.43 Aligned_cols=117 Identities=25% Similarity=0.385 Sum_probs=110.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHH--cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKS--LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~--~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
.+||||||.+.++++|+..+.. .|++++ .++++.+|++.+.+ .+||+||.|+.||.++|+++++.+++..|.+.+|
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~I 80 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFI 80 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhCCCceEE
Confidence 4799999999999999999974 589977 99999999999988 7899999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++|+.++-+.+..|++.|+.+||.||++.++|...+.++..
T Consensus 81 ILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 81 ILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred EEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-21 Score=131.92 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=109.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|||||||+...+..+.+++.. ||++. .+.+.++|...+.. ..||+|++|.-||+.+|.+++..+++.+..+-||+
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~ 79 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIV 79 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-hCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEE
Confidence 36899999999999999999986 89977 89999999999987 67999999999999999999999999988899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|+-.+.+.+.++++.|+-|||.|||..+.+..++.+..+
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred EeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977554
No 6
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.88 E-value=2.5e-21 Score=128.67 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=111.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
...|.|+|||...++.+..+|+..||.+.++.+..+.+..... ..|-++++|..||+++|.++..++.+.....|||++
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~-~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfi 82 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL-DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFL 82 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC-CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEE
Confidence 3468999999999999999999999999999999999988644 568999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+..+.....++++.||-|||.||++.+.|++.|++.+++
T Consensus 83 TGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 83 TGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred eCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 7
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=1.1e-20 Score=131.00 Aligned_cols=118 Identities=31% Similarity=0.400 Sum_probs=110.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcC-CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKSLG-FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g-~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+|+++||++..+..++..|+..+ ++++ .+.+++++++.+.. ..||++++|+.||+++|.+.++.+++..|+++++++
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvl 80 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-LKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVL 80 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-cCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEE
Confidence 58999999999999999998765 8877 77789999999776 689999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
|...+......+++.|+++|+.|..+++++...|+.++.|+
T Consensus 81 t~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred eccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999998763
No 8
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.84 E-value=1.9e-19 Score=125.96 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=108.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc-CCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL-GFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
.+++|+++||++..+..+...|+.. |+. +..+.++.++++.+.. ..||++++|+.+|+.+|+++++.+++..++.++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~i 81 (225)
T PRK10046 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQAHYPGDV 81 (225)
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCE
Confidence 3578999999999999999999864 786 5689999999999987 679999999999999999999999987777899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++++..+......+++.|+++|+.||++.++|...++++..
T Consensus 82 ivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 123 (225)
T PRK10046 82 VFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987644
No 9
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.84 E-value=3.5e-19 Score=123.71 Aligned_cols=118 Identities=28% Similarity=0.447 Sum_probs=110.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++||++++++.....+...|+..||.+..+.+..+++..+.. ..||++++|+.+|+.+|.++++.+++..+.+|+++++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls 79 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-HLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 368999999999999999999999999999999999998876 5799999999999999999999999877889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..++..++++
T Consensus 80 ~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred cCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 10
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=9.6e-20 Score=131.67 Aligned_cols=120 Identities=28% Similarity=0.459 Sum_probs=110.4
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC---c
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI---K 98 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~---~ 98 (145)
.....+||++||++..+..+...|+..||.+..+.+++++++.... .++|++++|+.||+++|.+++.+++...| .
T Consensus 11 ~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 11 PDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred CcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-cCCceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 4457789999999999999999999999999999999999999887 57999999999999999999999998444 6
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+|++++|+..+......++..|+++|+.||+++.+|..++...+
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999996544
No 11
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.83 E-value=6.4e-19 Score=122.70 Aligned_cols=118 Identities=25% Similarity=0.412 Sum_probs=109.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+++++++..+..+...|+..||.+..+.++.++++.+.. ..||++++|+.+++.+|.++++.+++..+.+|+++++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls 79 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLT 79 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 368999999999999999999999999999999999988876 5799999999999999999999999877889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..++..++++
T Consensus 80 ~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987754
No 12
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.82 E-value=2e-18 Score=120.39 Aligned_cols=119 Identities=25% Similarity=0.361 Sum_probs=109.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~iv 102 (145)
..+|+++|+++.....+...|+..|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++.. +.+|++
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 4679999999999999999999889999999999999998876 5799999999999999999999998753 678999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......++..|+++|+.||++.++|..++..++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999887754
No 13
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.82 E-value=2.2e-18 Score=119.82 Aligned_cols=117 Identities=24% Similarity=0.353 Sum_probs=107.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++|+++..+..+...|+..||.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++. +.+|+++++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~-~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcC-CCCCEEEEE
Confidence 478999999999999999999999999999999999988776 579999999999999999999999974 578999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999887753
No 14
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.82 E-value=2.1e-18 Score=119.54 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=108.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..+||++++++.....+...|+..||.+..+.++.+++..+.. ..||++++|..+++.+|.++++.+++. +.+|+|++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~-~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR-STVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCCCEEEE
Confidence 4579999999999999999999999999999999999998876 579999999999999999999999975 57899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......++..|+++|+.||++..+|..++..++++
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 9999988899999999999999999999999999887653
No 15
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.82 E-value=2.1e-18 Score=121.08 Aligned_cols=119 Identities=25% Similarity=0.396 Sum_probs=110.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..+||++++++..+..+...|+..||.+..+.++.+++..+.. ..||++++|..+++.+|.++++.+++..+.+|++++
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~l 83 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIML 83 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999999999999999999999999998876 679999999999999999999999987778999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|..++..++++
T Consensus 84 s~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 84 TAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred ECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 9999999899999999999999999999999999988754
No 16
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.82 E-value=2.4e-18 Score=118.94 Aligned_cols=118 Identities=22% Similarity=0.404 Sum_probs=109.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+++|+++..+..+...|+..|+.+.++.+..+++..+.. ..||++++|+.+++.+|.++++.++...+.+|+++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls 79 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-GHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILT 79 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 368999999999999999999999999899999999998876 5799999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
...+......++..|+++|+.||++.++|..++..++++
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 80 ARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999887653
No 17
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.82 E-value=2.4e-18 Score=118.89 Aligned_cols=117 Identities=27% Similarity=0.430 Sum_probs=108.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+++|+++.....+...|+..|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt 79 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREKGQREPVLILT 79 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 368999999999999999999899999999999999988876 5799999999999999999999999877889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+..+......++..|+++|+.||++.++|..++..+++
T Consensus 80 ~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 80 ARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 99998888999999999999999999999999988765
No 18
>PRK11173 two-component response regulator; Provisional
Probab=99.82 E-value=2.4e-18 Score=120.78 Aligned_cols=117 Identities=21% Similarity=0.364 Sum_probs=108.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++++++.....+...|+..|+.+..+.++.+++..+.. ..||++++|+.+++.+|.++++.+++. +.+|+|+++
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~-~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHhcC-CCCCEEEEE
Confidence 479999999999999999999999999999999999998877 579999999999999999999999975 578999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..+++.++++
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999888888999999999999999999999999888764
No 19
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.82 E-value=3.6e-18 Score=109.32 Aligned_cols=118 Identities=36% Similarity=0.572 Sum_probs=103.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHH-HHHHHHHcCC-CccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGK-EAVDLFRSGA-KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~-~al~~~~~~~-~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
..+||++||++..+..+...|+..|+.+..+.++. +++..+.. . .||++++|..||+++|+++++.+++..+.+|++
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~-~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv 83 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE-LPQPDLILLDINMPGMDGIELLRRLRARGPNIPVI 83 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh-CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEE
Confidence 56899999999999999999999999999999995 99999987 5 499999999999999999999999875667777
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHH-HHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDK-ILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~-L~~~i~~~~~ 143 (145)
++++.........++..|+++|+.||+...+ +...+...+.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 84 LLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 7888887776677789999999999977666 7777776553
No 20
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.81 E-value=2.2e-18 Score=119.77 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=107.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC-e-EEEEcCHHHHHHHHHcCCCccEEEEecCCCC---CCHHHHHHHHHhcCCcc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF-K-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPV---MNGIEATREIRSMGIKI 99 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~-~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~---~~~~~~~~~l~~~~~~~ 99 (145)
+++|+++|+++..+..++..|+..++ . +..+.++.+++..+.. ..||++++|+.+++ .+|.++++.+++..+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~ 81 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCC
Confidence 36899999999999999999987654 4 5588999999998876 57999999999998 59999999999888889
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+|++++..+......+++.|+++|+.||.+.++|...++.+..+
T Consensus 82 ~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred cEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999988765
No 21
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.81 E-value=5e-18 Score=118.12 Aligned_cols=117 Identities=24% Similarity=0.336 Sum_probs=107.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+||++||++..+..+...|+..||.+..+.+..+++..+.. ..||++++|+.+++ .+|.++++.++...+.+|++++
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~l 80 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-RLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFL 80 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999998876 57999999999997 4899999999987778999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......++..|+++|+.||++.+++..+++.++++
T Consensus 81 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 120 (227)
T TIGR03787 81 TARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRR 120 (227)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888764
No 22
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.81 E-value=5e-18 Score=117.83 Aligned_cols=118 Identities=26% Similarity=0.383 Sum_probs=108.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+++|+++.....+...|...||.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+++++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls 82 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFLT 82 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 579999999999999999999899999999999999988876 5799999999999999999999999877889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..++..++++
T Consensus 83 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 83 ARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred cCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 998888888999999999999999999999999887654
No 23
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.81 E-value=2.8e-18 Score=110.33 Aligned_cols=114 Identities=25% Similarity=0.256 Sum_probs=108.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
..||+|||..+...|...++.-||.+.++.+.++++...+. ..|...++|+.+.+.+|+.+++.+++..++..+|++|+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTG 89 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTG 89 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-CCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEec
Confidence 57999999999999999999999999999999999999988 78999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
..+-.....|.+.|+++|+.||-+.+.+...+.+.
T Consensus 90 y~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 90 YASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred chHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 99999999999999999999999999998887643
No 24
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.81 E-value=5.7e-18 Score=117.28 Aligned_cols=119 Identities=29% Similarity=0.421 Sum_probs=108.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv 102 (145)
+.+|+++|+++..+..+...|+..|+.+..+.+..+++..+.. ..||++++|..+++.+|.++++.++.. .+.+|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 4579999999999999999999889999999999999998876 579999999999999999999999875 3578999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......++..|+++|+.||++.++|...+..++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 999999988899999999999999999999999999887754
No 25
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-18 Score=129.08 Aligned_cols=120 Identities=26% Similarity=0.354 Sum_probs=112.4
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~i 101 (145)
.+.+||++||+...+..+++.|...||.+..+.++.+|+..+.+ .+||+|++|+.||+++|+++++++|+. ...+|+
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipi 209 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPI 209 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccccccccE
Confidence 35789999999999999999999999999999999999999988 589999999999999999999999974 347899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++.++......+++.|++||+.||++..++..++++.+++
T Consensus 210 i~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 210 ILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred EEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888764
No 26
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.80 E-value=8.8e-18 Score=117.07 Aligned_cols=116 Identities=28% Similarity=0.444 Sum_probs=106.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++||++..+..+...|+..|+.+..+.+..+++..+.. .||++++|+.+++.+|.++++.+++..+ +|+++++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~d~vl~d~~~~~~~g~~~~~~l~~~~~-~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKELRQTHQ-TPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc--CCCEEEEeCCCCCCcHHHHHHHHHhcCC-CcEEEEE
Confidence 378999999999999999999899999999999999987753 5999999999999999999999998765 8999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 988888889999999999999999999999999887754
No 27
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.80 E-value=8.2e-18 Score=115.18 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=108.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
++|+++++++..+..+...|+..|+.+. .+.+..+++..+.. ..||++++|..+++.+|.++++.++...+..|+|++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 79 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 79 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 4689999999999999999998899987 78999999998876 579999999999999999999999987778899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|...++.+.++
T Consensus 80 s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred eCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9998988999999999999999999999999999988754
No 28
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.80 E-value=1e-17 Score=117.98 Aligned_cols=116 Identities=21% Similarity=0.327 Sum_probs=104.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
+||++++++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+.+|.++++.+++. +.+|++++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~l~~~i~~~-~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-ETVDVVVVDLNLGREDGLEIVRSLATK-SDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEEEC
Confidence 69999999999999999999999999999999999998876 579999999999999999999999875 4689999988
Q ss_pred C-CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 107 L-NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 107 ~-~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
. .+......++..|+++|+.||++.++|..+++.++++
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 5 4666677899999999999999999999999887754
No 29
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.79 E-value=1.3e-17 Score=117.23 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=106.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++++++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++. ...|+++++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~~~~~ir~~-~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-EQPDLVLLDIMLPGKDGMTICRDLRPK-WQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCEEEEE
Confidence 378999999999999999999999999999999999998876 679999999999999999999999974 467899999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
...+......++..|+++|+.||++..+|..++..++++
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 888888888999999999999999999999999887653
No 30
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.79 E-value=7.9e-18 Score=137.84 Aligned_cols=119 Identities=29% Similarity=0.564 Sum_probs=112.2
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
...+||++||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.||+++|+++++.+++..+.+|||+
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~ 878 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIG 878 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46789999999999999999999999999999999999999987 67999999999999999999999999888899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++.........+++.|+++|+.||++.++|...+.+...
T Consensus 879 lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~ 918 (924)
T PRK10841 879 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAE 918 (924)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987764
No 31
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.79 E-value=1.5e-17 Score=116.37 Aligned_cols=118 Identities=31% Similarity=0.510 Sum_probs=108.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|+++|+++.....+...|+..|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.++.. +.+|++++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~-~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-EQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEE
Confidence 5689999999999999999999889999989999999988876 579999999999999999999999875 58899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|..++..++++
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999888889999999999999999999999999887653
No 32
>PRK09483 response regulator; Provisional
Probab=99.79 E-value=1.5e-17 Score=114.94 Aligned_cols=118 Identities=28% Similarity=0.386 Sum_probs=108.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|+++|+++..+..+...|+.. |+.+. .+.+..+++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIM 80 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEE
Confidence 57999999999999999999874 78876 78899999998877 67999999999999999999999998888899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++...+......++..|+++|+.||++.+++..++++++.+
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999988764
No 33
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.79 E-value=1.4e-17 Score=117.42 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=103.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
++||++||++..+..+...|.. .|+.+. .+.++.+++..+.. ...||++++|+.+|+++|.++++.+++..+.+|+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 5799999999999999999986 477755 78899999888752 24699999999999999999999999888889999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
++++..+......++..|+++|+.||++.++|...+.+.
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999764
No 34
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.79 E-value=1.8e-17 Score=114.81 Aligned_cols=117 Identities=16% Similarity=0.362 Sum_probs=107.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+++++++..+..+...|+..|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++. +.+|+++++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~-~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-DDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEE
Confidence 368999999999999999999999999999999999998876 679999999999999999999999875 478999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......++..|+++|+.||++.+++..+++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887653
No 35
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.79 E-value=1.6e-17 Score=114.51 Aligned_cols=116 Identities=24% Similarity=0.419 Sum_probs=107.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
|+++++++..+..+...|+..|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.++...+.+|+|+++..
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~ 79 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-DDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTAR 79 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcC
Confidence 5899999999999999999999999899999999998876 679999999999999999999999987788999999999
Q ss_pred CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 108 NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
.+......++..|+++|+.||++.+++..++..++++
T Consensus 80 ~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 80 DSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred CCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999887654
No 36
>PLN03029 type-a response regulator protein; Provisional
Probab=99.79 E-value=1.6e-17 Score=116.17 Aligned_cols=119 Identities=21% Similarity=0.357 Sum_probs=104.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcC-------------------CCccEEEEecCCCCCC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-------------------AKFDIVFIDKEMPVMN 84 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------------~~~dlvl~d~~~~~~~ 84 (145)
.+.+||++||+...+..+...|+..||.+.++.++.+++..+... ..+|+||+|+.|++++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 457899999999999999999999999999999999999988531 1367999999999999
Q ss_pred HHHHHHHHHhcC--CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 85 GIEATREIRSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 85 ~~~~~~~l~~~~--~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
|+++++.+++.. ..+|+|++++.........+++.|+++|+.||++..+|...+..++
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 999999999753 4789999999999999999999999999999999999877665443
No 37
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.78 E-value=1.2e-17 Score=136.73 Aligned_cols=120 Identities=16% Similarity=0.271 Sum_probs=111.2
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+.+|||+||++..+..+...|+..||.+..+.++.+++..+.....||+|++|+.||+++|+++++.+++..+.+|+|+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~ 759 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIG 759 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 35689999999999999999999999999999999999998864346899999999999999999999998888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++.........++..|+++|+.||++.++|...+.++++
T Consensus 760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 9999999989999999999999999999999999988765
No 38
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.78 E-value=5.1e-18 Score=136.51 Aligned_cols=120 Identities=31% Similarity=0.535 Sum_probs=111.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~iv 102 (145)
.+.+||++|||...+.....+|+..|..++++.++.+|+..+.....||+||+|++||.+||++..++||+. ..++|||
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIv 744 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIV 744 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCEE
Confidence 467899999999999999999999999999999999999999844689999999999999999999999973 3689999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++|+...++...++++.|.|+|+.||++.+.|...+.+.+.
T Consensus 745 AlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 745 ALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.77 E-value=4.4e-18 Score=120.12 Aligned_cols=116 Identities=28% Similarity=0.414 Sum_probs=104.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+|+||+......+..+|+..|..+..|+...+++..+.. ..||++|+|..||+++|.++++++++..+.+|||++|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIs 79 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFIS 79 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-cCCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEEe
Confidence 368999999999999999999999777799999999999988 7899999999999999999999999998999999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+... ...+.+...+++|+.||++.+.|-++|.++..+
T Consensus 80 sh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 80 SHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred cchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 8654 445566667799999999999999999988753
No 40
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.77 E-value=3.4e-17 Score=133.88 Aligned_cols=119 Identities=27% Similarity=0.400 Sum_probs=110.5
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~i 101 (145)
.+++||++||++..+..++..|+..|+.+..+.++.++++.+.. ..||+|++|+.||+++|.++++.+++. .+.+|+
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 35789999999999999999999999999999999999999987 689999999999999999999999974 457899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|++++.........+++.|+++|+.||++..+|...+.+...
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988764
No 41
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.76 E-value=3.5e-17 Score=133.87 Aligned_cols=118 Identities=32% Similarity=0.427 Sum_probs=109.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc----CCcc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~----~~~~ 99 (145)
.+++||++||++..+..+...|+..||.+.++.++.+|++.+.. ..||+|++|+.||+++|.++++.+++. .+.+
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 35689999999999999999999999999999999999999887 679999999999999999999999863 3678
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
|||++++..+......+++.|+++|+.||++.++|..++.++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 42
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.76 E-value=1e-16 Score=109.95 Aligned_cols=119 Identities=15% Similarity=0.255 Sum_probs=107.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+|+++++++.....+...|+.. ++.+. .+.+..+++..+.. ..||++++|+.+++.+|.++++.++...+.+|++
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~ii 81 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-RPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVL 81 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 467999999999999999999876 57776 68899999888876 6799999999999999999999999877789999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......++..|+++|+.||++.++|...++.++.+
T Consensus 82 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 82 FLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999888899999999999999999999999999887664
No 43
>PRK15115 response regulator GlrR; Provisional
Probab=99.76 E-value=4.7e-17 Score=124.11 Aligned_cols=118 Identities=29% Similarity=0.392 Sum_probs=110.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..+||++||++..+..+...|+..||.+..+.+..+++..+.. ..||+|++|+.+|+++|+++++.+++..+.+|+|++
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIvl 83 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIIL 83 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 4679999999999999999999999999999999999998876 679999999999999999999999988888999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++..+......++..|+++|+.||++.++|...+.++++
T Consensus 84 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 84 TAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred ECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 999988889999999999999999999999999988764
No 44
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.76 E-value=9.1e-17 Score=114.64 Aligned_cols=118 Identities=19% Similarity=0.358 Sum_probs=105.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc--ce
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK--IK 100 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~--~~ 100 (145)
+++||++|+++.....+...|+.. ++.+. .+.++.+++..+.. ..||+|++|+.||+++|+++++.+++..+. .|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~ 80 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPR 80 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCe
Confidence 468999999999999999999864 56655 78999999999887 679999999999999999999999986554 78
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++++++..+......+++.|+++|+.||++.++|..++.+++.
T Consensus 81 iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 81 VIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988764
No 45
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.76 E-value=4.6e-17 Score=133.87 Aligned_cols=118 Identities=21% Similarity=0.410 Sum_probs=110.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc---ceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK---IKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~---~~i 101 (145)
+.+||++||++..+..+...|+..||.+.++.++.++++.+.. ..||+||+|+.||+++|+++++.+++..+. +|+
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pi 780 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKF 780 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeE
Confidence 3479999999999999999999999999999999999999987 679999999999999999999999986554 899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|++++.........++..|+++|+.||++.++|...+.+++.
T Consensus 781 i~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 781 IAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 46
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.75 E-value=6.8e-17 Score=123.02 Aligned_cols=118 Identities=29% Similarity=0.437 Sum_probs=109.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|+|+||++..+..+...|+..||.+.++.++.+++..+.. ..||+|++|+.||+++|.++++.++...+.+|+|++
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi~l 83 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIM 83 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 4789999999999999999999999999999999999998876 579999999999999999999999988888999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++..+......+++.|+.+|+.||++.++|...+.++++
T Consensus 84 t~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 84 TAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred ECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 999888899999999999999999999999999987654
No 47
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.75 E-value=9.4e-17 Score=123.21 Aligned_cols=117 Identities=26% Similarity=0.353 Sum_probs=109.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+|||+||++..+..+...|+..||.+..+.++.+++..+.. ..||+|++|+.+++.+|.++++.++...+.+|+|+++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-~~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvlt 82 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEEE
Confidence 479999999999999999999999999999999999999987 6799999999999999999999999887889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+..+......+++.|+++|+.||++.+++...+.+++.
T Consensus 83 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 83 AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred CCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987764
No 48
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.75 E-value=2.7e-16 Score=108.63 Aligned_cols=118 Identities=23% Similarity=0.382 Sum_probs=107.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|+++++++.....+...|+..|+.+.++.+..+++..+.. ..||++++|..+++.+|.++++.++...+.+|+++++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~lt 79 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-EMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLLT 79 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 368999999999999999999889998899999999888776 5799999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......++..|+++|+.||++.+++...+..++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 118 (221)
T PRK15479 80 ARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118 (221)
T ss_pred CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhh
Confidence 998888889999999999999999999999999887653
No 49
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.74 E-value=1.4e-16 Score=121.79 Aligned_cols=118 Identities=27% Similarity=0.421 Sum_probs=109.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..+||++|+++..+..+...|+..||.+..+.+..+++..+.. ..||+|++|+.+|+++|.++++.++...+.+|+|++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI~l 82 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILM 82 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4479999999999999999999999999999999999998877 679999999999999999999999987788999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++..+......+++.|+++|+.||++.++|...+.+++.
T Consensus 83 t~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 83 TAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred eCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999998876653
No 50
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.74 E-value=4.1e-16 Score=109.16 Aligned_cols=116 Identities=23% Similarity=0.332 Sum_probs=106.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+|+++++++.....+...|+..|+.+..+.+..+++..+.. ..||++++|..+++.+|.++++.++. .+.+|+++++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~-~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-TPPDLILLDLMLPGTDGLTLCREIRR-FSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCCCEEEEE
Confidence 379999999999999999999999999999999999998876 57999999999999999999999986 4578999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
...+......++..|+++|+.||++.++|..++..+++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 98888888899999999999999999999999987765
No 51
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.74 E-value=3.1e-16 Score=106.74 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=102.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc-CCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL-GFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|+++++++..+..+...|+.. ++. +..+.+..+++..+.. ..||++++|+.+++.+|.++++.++. ..|+++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~---~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-RGVQVCICDISMPDISGLELLSQLPK---GMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHcc---CCCEEE
Confidence 47999999999999999999754 666 4588999999998876 57999999999999999999988863 578999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++...+......++..|+++|+.||++.+++..+++++.++
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988764
No 52
>PRK14084 two-component response regulator; Provisional
Probab=99.74 E-value=3.2e-16 Score=110.76 Aligned_cols=115 Identities=24% Similarity=0.334 Sum_probs=100.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcC-C-eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLG-F-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g-~-~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|+++||++..+..+...|+..+ + .+..+.++.+++..+.. ..||++++|+.||+++|.++++.+++..+..++|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-~~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI~ 79 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-NQYDIIFLDINLMDESGIELAAKIQKMKEPPAIIF 79 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999998765 4 36688999999998876 57999999999999999999999998777778888
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++.. ....++++.|+.+|+.||++.++|...++++..
T Consensus 80 ~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 80 ATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred EecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 87754 356788999999999999999999999988764
No 53
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.73 E-value=1.6e-16 Score=121.20 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=104.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhcCCcceEE
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~~~~~~iv 102 (145)
|||+||++..+..+...+ .||.+..+.+..++++.+.. ..||+|++|+.||+ ++|.++++.+++..+.+|+|
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI 77 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-HEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 77 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEE
Confidence 589999999999999888 78999999999999999987 57999999999995 79999999999888899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++++..+......+++.|+++|+.||++.++|..++.++++
T Consensus 78 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 78 VITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999877654
No 54
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.73 E-value=2.1e-16 Score=127.67 Aligned_cols=118 Identities=29% Similarity=0.498 Sum_probs=105.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--Cc-ce
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IK-IK 100 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~-~~ 100 (145)
.+.+||++||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.||+++|.++++.+++.. +. .|
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 35789999999999999999999999999999999999999876 6799999999999999999999999865 44 48
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|++++.... ....++..|+++|+.||++.++|...+.+++.
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 8888877654 46788999999999999999999999988764
No 55
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.73 E-value=2.5e-16 Score=120.68 Aligned_cols=115 Identities=23% Similarity=0.326 Sum_probs=107.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
|||+||++..+..+...|+..||.+..+.+..+++..+.. ..||+|++|+.+|+++|.++++.+++..+.+|+|++++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~~ 79 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-GQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTAH 79 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeCC
Confidence 5899999999999999999999999999999999998876 579999999999999999999999988788999999999
Q ss_pred CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 108 NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+......++..|+++|+.||++.++|...+.+++.
T Consensus 80 ~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 80 SDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred CCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 988889999999999999999999999999987654
No 56
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.73 E-value=2.6e-16 Score=131.94 Aligned_cols=117 Identities=31% Similarity=0.515 Sum_probs=109.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|||+||++..+..+...|+..||.+..+.++.+++..+.. ..||+|++|+.||+++|.++++.+++..+.+|++++
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~l 1036 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM-QHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGL 1036 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999999999999999999999999977 679999999999999999999999988788999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
++..+......+++.|+++|+.||++.++|...+.++.
T Consensus 1037 t~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 1074 (1197)
T PRK09959 1037 TANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred ECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987654
No 57
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.72 E-value=5.9e-16 Score=105.01 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=108.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|+++++++.....+...|...||.+..+.+..+++..+.. ..||++++|..+++.+|.++++.++...+.+|++++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l 81 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999999999899999999999999988876 579999999999999999999999987788999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+...+......++..|+++|+.||++.+++...+..++.
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred ECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 999998999999999999999999999999988887664
No 58
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.70 E-value=4.4e-16 Score=118.22 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=106.1
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcce
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIK 100 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~ 100 (145)
..+.+||++||++..+..+...|.. ++.+..+.++.+++..+.. ..||+|++|+.||+++|.++++.+++. .+.+|
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~-~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE-TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc-CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 3466899999999999999999965 4677789999999998776 679999999999999999999999974 47899
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
++++++..+......+++.|+++|+.||++.++|..++....
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~ 272 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQI 272 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887644
No 59
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.70 E-value=1.9e-15 Score=114.78 Aligned_cols=117 Identities=29% Similarity=0.360 Sum_probs=107.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~iv~ 103 (145)
.+||++++++..+..+...|...||.+..+.+..+++..+.. ..||+|++|..+++.+|.++++.+++.. +.+|+|+
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~ 81 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVM 81 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 479999999999999999998889999999999999999877 6799999999999999999999998743 4689999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++..+......++..|+++|+.||++.++|..++.++.+
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 82 VTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654
No 60
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.70 E-value=1.2e-15 Score=106.27 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=95.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHH-HHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT-REIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~-~~l~~~~~~~~iv 102 (145)
..++++++|+|.....++..|+ .++. +..+.++.+++..+. +||+|++|+.+|+.+|++++ +.++...|.++||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 4469999999999999999997 4455 447778888887642 49999999999999999997 5688888899999
Q ss_pred EEeCCCCHHHHHHHHH--hCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQ--AGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~--~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++...+.. ..++. .|+.+|+.|+.+.++|...|+.+.+|
T Consensus 86 vlt~~~~~~--~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 86 LLNTPEDYP--YREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred EEECCchhH--HHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 999987633 34444 59999999999999999999988875
No 61
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.69 E-value=8.6e-15 Score=91.77 Aligned_cols=119 Identities=32% Similarity=0.439 Sum_probs=105.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~i 101 (145)
+++++++++++.....+...|+..|+. +..+.+..+++..+.. ..||++++|..+++.++.++++.++... +..|+
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFVISDWNMPNMDGLELLKTIRADGAMSALPV 83 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCcE
Confidence 467899999999999999999988885 6688899999888876 5799999999999999999999998753 46788
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++...+......++..|+++|+.||++..++...+++++++
T Consensus 84 i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 84 LMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 9898888888888999999999999999999999999887754
No 62
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.69 E-value=4.6e-15 Score=101.89 Aligned_cols=119 Identities=24% Similarity=0.341 Sum_probs=106.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
..+|+++++++.....+...|... ++.+. .+.+..+++..+.. ..||++++|+.+++.+|.++++.++...+..|++
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~vi 84 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIV 84 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEE
Confidence 467999999999999999999764 56654 68899999998876 5799999999999999999999999877788999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++...+......++..|+++|+.||++.++|...+..++.+
T Consensus 85 ~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 85 VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999998888899999999999999999999999999988754
No 63
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.69 E-value=5.4e-15 Score=101.41 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=105.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+++++++++.....+...|+. .++.+. .+.+..+++..+.. ..||++++|..+++.+|.++++.+++..+..|++
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~ii 84 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDPDVILLDLNMKGMSGLDTLNALRRDGVTAQII 84 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 46799999999999999999975 477775 68899999988776 5799999999999999999999999887788999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++...+......+++.|+++|+.||++..+|...++.+..
T Consensus 85 ~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 85 ILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred EEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 99988888888899999999999999999999999987654
No 64
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.68 E-value=1.4e-15 Score=105.17 Aligned_cols=106 Identities=10% Similarity=0.052 Sum_probs=90.4
Q ss_pred HHHHHHHHHH---cCCeEEEEcCHHHHHHHHHcCCCccEEE---EecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHH
Q 048318 38 RTIHSMALKS---LGFKVEVAENGKEAVDLFRSGAKFDIVF---IDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA 111 (145)
Q Consensus 38 ~~~l~~~L~~---~g~~v~~~~~~~~al~~~~~~~~~dlvl---~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~ 111 (145)
+..+..+|+. .||.+..+.+++++++.+.. ..||+++ +|..||+++|+++++.+++..|.+|||++|...++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~ 81 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-ISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEA 81 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-CCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHH
Confidence 5677888864 35666789999999998876 5799998 677889999999999999989999999999887676
Q ss_pred HHHHHH-HhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 112 EREAFM-QAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 112 ~~~~~~-~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
....++ +.|+++|+.||.+.++|...|+.++++
T Consensus 82 ~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 82 RLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred HHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 555554 799999999999999999999998875
No 65
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.68 E-value=4.2e-15 Score=104.45 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=96.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcC-CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLG-FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g-~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|+|+||++..+..+...|+..| +.+ ..+.++.+++..+.. ..||++++|+.|++++|.++++.++.. ...++|+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlv~lDi~~~~~~G~~~~~~l~~~-~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-LKPDVVFLDIQMPRISGLELVGMLDPE-HMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHhccc-CCCEEEE
Confidence 589999999999999999998877 443 478899999998876 579999999999999999999988643 2346777
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|+.. +....+++.|+.+|+.||++.++|...+.++.+
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 77654 456788999999999999999999999988754
No 66
>PRK13435 response regulator; Provisional
Probab=99.68 E-value=5.7e-15 Score=96.41 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=98.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|+++++++.....+...|+..|+.+. .+++..+++..+.. ..||++++|..++ +.++.++++.++.. +.+|++
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~dliivd~~~~~~~~~~~~~~~l~~~-~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-RQPDVALVDVHLADGPTGVEVARRLSAD-GGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-cCCCEEEEeeecCCCCcHHHHHHHHHhC-CCCCEE
Confidence 46899999999999999999998899977 78999999988866 5799999999997 47899999998764 478999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++...+. ..+...|+++|+.||++.++|...|++++.+
T Consensus 83 ~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (145)
T PRK13435 83 FMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSAR 121 (145)
T ss_pred EEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhc
Confidence 88875432 4567899999999999999999999888754
No 67
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.67 E-value=2e-15 Score=120.19 Aligned_cols=117 Identities=17% Similarity=0.082 Sum_probs=104.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
.++||++|+++..+..+...|...||.+..+.++.+++..+.. ..||+|++|+.+|+++|.++++.++...+.+|+|++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~l 85 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-GEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVVV 85 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-cCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999999998889999999999999998876 579999999999999999999999988888999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHH--HHHHHHHHHH
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVD--KILPLMEDLM 142 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~--~L~~~i~~~~ 142 (145)
++..+......++..|+++|+.||.+.. .+..++...+
T Consensus 86 t~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 86 PTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 9999999999999999999999997643 5556665444
No 68
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.67 E-value=1e-14 Score=99.46 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=105.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
..+|+++++++..+..+...|... ++.+. .+.+..+++..+.. ..||++++|..+++.+|.++++.+++..+..|++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ii 81 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-LEPDIVILDLGLPGMNGLDVIPQLHQRWPAMNIL 81 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 467999999999999999999875 46655 78899999888776 5799999999999999999999999877788999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++...+......++..|+++|+.||++..+|...+..+..+
T Consensus 82 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 82 VLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred EEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999888899999999999999999999999999877653
No 69
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.67 E-value=6.3e-15 Score=102.08 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=96.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcC--CeE-EEEcCHHHHHHHHHcCCCccEEEEecC--CCCCCHHHHHHHHHhcCCcceE
Q 048318 27 FALVVDDDCFIRTIHSMALKSLG--FKV-EVAENGKEAVDLFRSGAKFDIVFIDKE--MPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g--~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~--~~~~~~~~~~~~l~~~~~~~~i 101 (145)
.|+|+||++..+..++..|+..+ +.+ ..+.++++++..+.. ..||++++|+. ++..+|.++++.+++..|.+++
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~i 80 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLF 80 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeE
Confidence 58999999999999999998655 344 478999999998876 57999999966 7777899999999998889999
Q ss_pred EEEeCCCCHHHHHHHHHhCCce-eecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDL-CHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++++..+..... ++..|+.. |+.|+.++++|...++.+..+
T Consensus 81 ivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 81 IVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred EEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 9999887765543 44445444 789999999999999988765
No 70
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.66 E-value=5.8e-15 Score=109.10 Aligned_cols=115 Identities=28% Similarity=0.315 Sum_probs=97.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHH-HcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALK-SLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~-~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++||++||++..+..++..|+ ..|+.+. .+.++.++++.+.. ..||+|++|+.+|+++|+++++.+++.. .+|+++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-~~pDlVllD~~mp~~~G~e~l~~l~~~~-~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-QPPDVILMDLEMPRMDGVEATRRIMAER-PCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-cCCCEEEEcCCCCCCCHHHHHHHHHHHC-CCcEEE
Confidence 368999999999999999995 5688876 78999999999987 6799999999999999999999998754 478888
Q ss_pred EeCCCC--HHHHHHHHHhCCceeecCCC---------CHHHHHHHHHHHH
Q 048318 104 VTSLNS--EAEREAFMQAGLDLCHTKPL---------SVDKILPLMEDLM 142 (145)
Q Consensus 104 l~~~~~--~~~~~~~~~~g~~~~l~kP~---------~~~~L~~~i~~~~ 142 (145)
+++..+ ......+++.|+++|+.||+ ..++|..+++.+.
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 887643 45667889999999999999 5677777777654
No 71
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.65 E-value=9.8e-15 Score=108.53 Aligned_cols=116 Identities=28% Similarity=0.375 Sum_probs=98.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++||++|++...+..+...|+.. |+.+. .+.+..+++..+.. ..||+|++|+.+++++|+++++.+++..+ +|++
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-~~~DlVllD~~mp~~dgle~l~~i~~~~~-~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-LNPDVITLDVEMPVMDGLDALEKIMRLRP-TPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-hCCCEEEEeCCCCCCChHHHHHHHHHhCC-CCEE
Confidence 468999999999999999999876 78877 88999999998876 57999999999999999999999998766 8999
Q ss_pred EEeCCC--CHHHHHHHHHhCCceeecCCCCH---------HHHHHHHHHHH
Q 048318 103 GVTSLN--SEAEREAFMQAGLDLCHTKPLSV---------DKILPLMEDLM 142 (145)
Q Consensus 103 ~l~~~~--~~~~~~~~~~~g~~~~l~kP~~~---------~~L~~~i~~~~ 142 (145)
+++... .......++..|+++|+.||++. .++..+++.+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~ 131 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAA 131 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHh
Confidence 998753 34567789999999999999953 45666655543
No 72
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.62 E-value=3.6e-14 Score=115.57 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=106.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcC-CCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+.+||++|+++..+..+...|+..||.+..+.++.+++..+... ..||+|++ .+++++|.++++.++...+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 45799999999999999999999999999999999999988652 24799999 6899999999999998888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++.........++..| ++|+.||++..+|...+.+.++
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 99999888899999999 9999999999999999998875
No 73
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.60 E-value=2.5e-14 Score=95.85 Aligned_cols=118 Identities=31% Similarity=0.403 Sum_probs=99.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
++.++|++++++..+..+...|...||.++ ++.++-++.+.... ..||+||+|..+|..+..+-. .+.+..+..|+|
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-~~pDvVildie~p~rd~~e~~-~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-LQPDVVILDIEMPRRDIIEAL-LLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-cCCCEEEEecCCCCccHHHHH-HHhhcCCCCCEE
Confidence 456899999999999999999999999976 88888888888877 789999999999988833332 233445567899
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++++.+++.....+..+|+.+|++||+++..+...+.-+.+
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHH
Confidence 99999999999999999999999999999999888865543
No 74
>PRK13557 histidine kinase; Provisional
Probab=99.59 E-value=1.1e-13 Score=107.07 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=109.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv 102 (145)
.+.+|+++++++.....+...|+..||.+..+.+..+++..+.....||++++|..+++ .++.++++.+++..+.+|++
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 35689999999999999999999999999999999999998865235999999999997 89999999999887889999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++...+......++..|+.+|+.||++.++|...+++++.+
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 999988888888889999999999999999999999988754
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.59 E-value=1.3e-13 Score=98.10 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=99.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~i 101 (145)
...+++++++++..+..+...|+..|+.+. .+.+..+++..+.. ..||+|++|+.+++ .+|.+.++.++... ++|+
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-~~~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pi 213 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILKTF-DVPV 213 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-cCCCEEEEecCCCCCCCHHHHHHHHHHhC-CCCE
Confidence 456799999999999999999998899887 78899999998876 67999999999995 78999999998766 8899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|++++..+.... ....|+.+|+.||++.++|...+.++..
T Consensus 214 i~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 214 IFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred EEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 999987665433 3446788999999999999999988653
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.57 E-value=2.3e-13 Score=82.15 Aligned_cols=112 Identities=36% Similarity=0.547 Sum_probs=99.8
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 29 Lii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
+++++++.....+...+...|+.+..+.+..+++..+.. ..||++++|..+++.++.+.++.++...+..|+++++...
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 79 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHG 79 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-CCCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEecc
Confidence 478999999999999999889999899999999988876 5799999999999999999999998876778999888777
Q ss_pred CHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 109 SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.......+...|+.+|+.||++..++...+.++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 80 DDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred cHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 777788889999999999999999999888754
No 77
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.54 E-value=5.2e-13 Score=97.72 Aligned_cols=104 Identities=34% Similarity=0.478 Sum_probs=92.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcC-CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLG-FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g-~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++||++||.+..+..++..|...| .++ ..+.++.++++.+.+ ..||+|.+|.+||.+||+++++.+.+. .++|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~im~~-~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKIMRL-RPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-cCCCEEEEecccccccHHHHHHHHhcC-CCCcEE
Confidence 3689999999999999999999887 554 489999999999988 789999999999999999999999876 688999
Q ss_pred EEeCCC--CHHHHHHHHHhCCceeecCCCC
Q 048318 103 GVTSLN--SEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 103 ~l~~~~--~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
++++.. ..+...++++.|+-||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 887764 3566888999999999999974
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.49 E-value=6.1e-13 Score=97.08 Aligned_cols=88 Identities=23% Similarity=0.410 Sum_probs=79.5
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCC-CHH
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL-SVD 132 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~-~~~ 132 (145)
.+.++.++++.+.. ..||+|++|+.||+++|.++++.+++..+.+|+|++++..+......+++.|+++|+.||+ +.+
T Consensus 2 ~a~~g~~al~~l~~-~~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~ 80 (303)
T PRK10693 2 LAANGVDALELLGG-FTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLN 80 (303)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHH
Confidence 46788999998877 6799999999999999999999999887889999999999999999999999999999999 589
Q ss_pred HHHHHHHHHH
Q 048318 133 KILPLMEDLM 142 (145)
Q Consensus 133 ~L~~~i~~~~ 142 (145)
++..++.+.+
T Consensus 81 ~L~~~i~~~l 90 (303)
T PRK10693 81 RLREMVFACL 90 (303)
T ss_pred HHHHHHHHHh
Confidence 9988887655
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.47 E-value=9.5e-13 Score=105.20 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=92.0
Q ss_pred eEEEEeCcHH--------HHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH----HHHHHHHh
Q 048318 27 FALVVDDDCF--------IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI----EATREIRS 94 (145)
Q Consensus 27 ~iLii~~~~~--------~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~----~~~~~l~~ 94 (145)
+||||||+.. ..+.++..|+..||++.++.++++++..+.....||+||+|+.+|+++|. ++++.+|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999996 69999999999999999999999999999652369999999999999997 89999998
Q ss_pred cCCcceEEEEeCCCC--HHHHHHHHHhCCceeecCCCC-HHHHHHHHHHHH
Q 048318 95 MGIKIKIVGVTSLNS--EAEREAFMQAGLDLCHTKPLS-VDKILPLMEDLM 142 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~--~~~~~~~~~~g~~~~l~kP~~-~~~L~~~i~~~~ 142 (145)
..+.+|||++|+..+ ...... ...-++.|+.+--+ .+.+..++....
T Consensus 82 ~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (755)
T PRK15029 82 RQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAM 131 (755)
T ss_pred hCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHH
Confidence 778999999999885 333333 33457788887544 444444455443
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=2.1e-10 Score=81.33 Aligned_cols=114 Identities=32% Similarity=0.399 Sum_probs=96.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++++++||++..++.+...+... .+++. .+.+..++++.+.. ..||++++|..|++++|.++...++...+..+|++
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-cCCCeEEEeeccCccchHHHHHHhcccCCCCeEEE
Confidence 57899999999999999999843 23333 78899999999887 58999999999999999999999998777788888
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+++.. +....+++..+-+|+.||++.+.+...+.+..
T Consensus 81 vt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~ 117 (244)
T COG3279 81 VTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLR 117 (244)
T ss_pred EEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHH
Confidence 88854 44556678889999999999999999998643
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.86 E-value=1.1e-07 Score=78.43 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=92.0
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHH-Hhc-CCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREI-RSM-GIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l-~~~-~~~~~i 101 (145)
.+.+|+++|+++..+..+...|+..|+.+..+.+..+ +.. ..||++++|..+++..+...+... +.. ....++
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~-~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE-AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFL 609 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc-CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcE
Confidence 3568999999999999999999999999998888887 333 569999999999987766554444 332 223456
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
++++...+......+.+.|+++|+.||++..++...+...
T Consensus 610 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 649 (919)
T PRK11107 610 ILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEP 649 (919)
T ss_pred EEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHh
Confidence 7777878888888899999999999999999999888754
No 82
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.81 E-value=1e-07 Score=59.49 Aligned_cols=107 Identities=18% Similarity=0.100 Sum_probs=80.0
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
||||||||...+..+...|+-.|+.+..++..+- ...... ...+.+++...-.+ ...+.++.+.+..+++|+++++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~-~~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg~ 77 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS-SPWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLGE 77 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh-cCCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEECC
Confidence 5899999999999999999999999888775443 233333 45676666654333 56778888888889999999888
Q ss_pred CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
....... ..+-+-+..|+++.+|...++++
T Consensus 78 ~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 78 HDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 7766111 11555578899999999999875
No 83
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=98.60 E-value=9.2e-07 Score=55.75 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 37 IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
....+...|+..|+.++.+.+.++++..+........|+++|+ ++ ....++++.++.+++.+||.+++.........
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 4567788888899999999999999999987566889999996 21 24568899999999999999999877555555
Q ss_pred HHHHhCCceeecCC-CCHHHHHHHHHHHHhcC
Q 048318 115 AFMQAGLDLCHTKP-LSVDKILPLMEDLMKNN 145 (145)
Q Consensus 115 ~~~~~g~~~~l~kP-~~~~~L~~~i~~~~~~~ 145 (145)
...-..+++|+... .+.+.+..+|.+..+++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~Y 115 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARRY 115 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHhC
Confidence 55666788888774 56788888888877653
No 84
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=98.40 E-value=3.9e-05 Score=48.80 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=78.4
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeC
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
|.|..-...+..+|+..||++... ...++..+.+.+ ..||+|.+...+... ...++++.+++..+....+++..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 556666677788889999998853 357777787777 679999998776532 23567778887755334445666
Q ss_pred CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
.........+.+.|++.|+..-.+.++....++
T Consensus 89 ~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 89 IIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 566666788889999999988888888777654
No 85
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=98.39 E-value=7.9e-05 Score=48.38 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=87.7
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~ 95 (145)
+.+|++. |.|..-...+..+|+..||+|... ...++..+.+.+ ..||+|.+...+... ...++++.+++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 3467777 777777788888899999998853 367888888877 679999999866542 345777888876
Q ss_pred CC-cceEEEEeCCC------CHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 96 GI-KIKIVGVTSLN------SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 96 ~~-~~~iv~l~~~~------~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
.+ +++++ +.+.. .......+.+.|++.++....+.+++...+++.+..
T Consensus 82 ~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 82 GLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred CCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhcc
Confidence 44 66554 44432 334456788999999998888999999999887753
No 86
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.37 E-value=8.1e-07 Score=67.44 Aligned_cols=91 Identities=29% Similarity=0.381 Sum_probs=77.8
Q ss_pred CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCC
Q 048318 50 FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 50 ~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~ 129 (145)
+++..+.++.+++..+.. ..||.+++|..||+++|+++++.+++.... +++++...+.......+++|+++++.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~-~~~~~~lld~~m~~~~~~~~~~~lk~~~~~--~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLD-HKPDYKLLDVMMPGMDGFELCRRLKAEPAT--VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhc-CCCCeEEeecccCCcCchhHHHHHhcCCcc--eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 445568899999998887 789999999999999999999999975333 67778888888888999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 048318 130 SVDKILPLMEDLMK 143 (145)
Q Consensus 130 ~~~~L~~~i~~~~~ 143 (145)
....+..+...+..
T Consensus 90 ~~~~~~~r~~~l~~ 103 (435)
T COG3706 90 NDSQLFLRAKSLVR 103 (435)
T ss_pred ChHHHHHhhhhhcc
Confidence 99999888876553
No 87
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=98.32 E-value=9.2e-05 Score=47.78 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=79.7
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhcCCcceEEEEeC
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
|.|..-...+..+|+..||+|.. ..+.++.++...+ ..+|+|.+...+.. . .-..+++.+++.......+++..
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 56666778888899999999884 4578888888877 57999988765532 2 23456677777554333344565
Q ss_pred CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
....+....+...|++.|+..-.+..+.+..+.+.+
T Consensus 92 ~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 92 VIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred CCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 455566778999999999987788888888877654
No 88
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=98.25 E-value=2e-05 Score=40.49 Aligned_cols=53 Identities=36% Similarity=0.611 Sum_probs=46.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
+++++++++.....+...+...|+.+..+.+..++...+.. ..||++++|+.+
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~ 54 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-EKPDLILLDIMM 54 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-cCCCEEEEeccC
Confidence 58999999999999999999889998899999999888766 579999999764
No 89
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=97.96 E-value=0.00083 Score=43.40 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=78.8
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeC
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
|-|..-...+..+|+..||+|.. ..+.++.++...+ ..+|+|-+..-+... .-.++.+.+++....-+.+++..
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 33444456778889999999883 5588888888877 679999998765432 23456777777655444455666
Q ss_pred CC---CHH---HHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 107 LN---SEA---EREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 107 ~~---~~~---~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.. ..+ ....+.+.|++..+....+++++...+++.++
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 31 122 24468899999999888889999999987764
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.85 E-value=0.00074 Score=42.55 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCC-cceEEEEe
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGI-KIKIVGVT 105 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~-~~~iv~l~ 105 (145)
|.|..-...+..+|+..||++.. ..+.++..+.+.+ ..||+|.+...+.. ....++++.+++..+ +++|+ ++
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~-vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL-VG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE-EE
Confidence 55556667888889999999864 2356677787777 67999999887544 245678888888776 66655 55
Q ss_pred CCCCHHHHHHHHHhCCceeec
Q 048318 106 SLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+.........+...|+|.|+.
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCCChhHHHHHHcCCeEEEC
Confidence 554444445788899988864
No 91
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=97.84 E-value=0.00038 Score=56.31 Aligned_cols=114 Identities=9% Similarity=0.036 Sum_probs=78.4
Q ss_pred eEEEEeCcH------HHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDC------FIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~------~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
++++|+++. .....|...|++.||.+..+.+..++...+........++++++.. ...+++.++++...+|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P 78 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQLNEYLP 78 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHhCCCCC
Confidence 567776663 2246677788889999999999999999887655688999997433 3568899999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCC-CCHHHHHHHHHHHHh
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKP-LSVDKILPLMEDLMK 143 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP-~~~~~L~~~i~~~~~ 143 (145)
|++++............-...+.|+..- .+.+....+|.+..+
T Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 79 LYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred EEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 9998776533333333333455665443 334555555655544
No 92
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=97.74 E-value=0.00055 Score=55.44 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=77.2
Q ss_pred eEEEEeCcH------HHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDC------FIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~------~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
+|++|+++. .....|...|++.||.|..+.+..+++..+........++++++. ....+++.++.+...+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~P 78 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKMNENLP 78 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHhCCCCC
Confidence 466666552 235667778888999999999999999988765568899999743 23568999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecC-CCCHHHHHHHHHHHHh
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTK-PLSVDKILPLMEDLMK 143 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~k-P~~~~~L~~~i~~~~~ 143 (145)
|++++.......+....-.-.+.|+.. -.+.+.+..+|.+..+
T Consensus 79 v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (714)
T PRK15400 79 LYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTD 122 (714)
T ss_pred EEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHH
Confidence 999887653333222233345555543 2345555555655544
No 93
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=97.61 E-value=0.0048 Score=39.53 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHHHHcCCeEE---EEcCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhcCC-cceEEEEeC
Q 048318 33 DDCFIRTIHSMALKSLGFKVE---VAENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSMGI-KIKIVGVTS 106 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~~~-~~~iv~l~~ 106 (145)
-|..-...+..+|+..||+|. ...+.++.++...+ ..+|+|.+..-+.. + ...++.+.+++... +++++ +..
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-vGG 88 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-VGG 88 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-EEC
Confidence 344445677888999999988 34577888888877 57999999876543 2 23567778887654 55554 555
Q ss_pred CC--C----HHHHHHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 107 LN--S----EAEREAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 107 ~~--~----~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
.. . ......+.+.|++.++....+++++...++
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 42 1 223456889999999988788888877664
No 94
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.46 E-value=0.0051 Score=38.61 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCC-CCC-CHHHHHHHHHhcCCcceEEEEeCC
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEM-PVM-NGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~-~~~-~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
-++.-...+..+|++.||++... .+.++..+.+.. ..||+|.+...+ +.. ...++++.+++..|+++++ +++.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv-~GG~ 89 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV-VGGP 89 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE-EEES
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE-EECC
Confidence 34566788899999999998855 245777777777 579999998843 332 4567778888888887776 4555
Q ss_pred CCHHHHHHHHH--hCCceeecC
Q 048318 108 NSEAEREAFMQ--AGLDLCHTK 127 (145)
Q Consensus 108 ~~~~~~~~~~~--~g~~~~l~k 127 (145)
.-.......++ .|+|..+..
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEE
T ss_pred chhcChHHHhccCcCcceecCC
Confidence 54444455554 687777654
No 95
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=97.42 E-value=0.013 Score=38.10 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=81.0
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEE---EEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVE---VAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~ 95 (145)
+.+|++. |.|..-.+.+.+.|+..||+|. ...+.+|+.+..-+ ...|+|.+..--.. .....+.+.+++.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-~dv~vIgvSsl~g~h~~l~~~lve~lre~ 90 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-EDVDVIGVSSLDGGHLTLVPGLVEALREA 90 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-cCCCEEEEEeccchHHHHHHHHHHHHHHh
Confidence 4456554 7888888999999999999987 46789999888765 46888777642211 1233455666666
Q ss_pred CCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 96 GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
...--.+++...-.........+.|++.++.--....+.+..+...+
T Consensus 91 G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 91 GVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred CCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 55433345677677777888889999999865566666665554443
No 96
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=97.19 E-value=0.024 Score=39.17 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=69.0
Q ss_pred ceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcC
Q 048318 26 LFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMG 96 (145)
Q Consensus 26 ~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~ 96 (145)
.+|++. |.|..-...+..+|+..||+|... ...++.++.+.+ ..||+|-+...+... ...++++.+++..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 467776 666666788888899999998742 356778888877 679999999876543 3456788888876
Q ss_pred C--cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 97 I--KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 97 ~--~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+ +++|++=+..-+.. -+...|+|.|-
T Consensus 162 ~~~~~~i~vGG~~~~~~---~~~~~GaD~~~ 189 (201)
T cd02070 162 LRDKVKVMVGGAPVNQE---FADEIGADGYA 189 (201)
T ss_pred CCcCCeEEEECCcCCHH---HHHHcCCcEEE
Confidence 6 67776544444443 45667999995
No 97
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=97.11 E-value=0.0088 Score=37.60 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=73.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHH-HHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATR-EIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~-~l~~~~~~~~iv~ 103 (145)
..+.+.||.|........+.|...+.+|+.-.+..+. -. ..||.+++++-.+-.....+-. ++.+...-+-.|+
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l----p~-~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~vi 85 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL----PP-AHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFVI 85 (140)
T ss_pred cceeEEecCccHHHHHHHHHHhcCCceEEeccccccc----Ch-hhhceeeecccccccCCchHHHHHHHHHHhhhcceE
Confidence 3467899999999999999999999999876555432 12 4699999998665433332221 1111111222334
Q ss_pred EeCCC-CHHHHHHHHHhCCceeecCCCCHHHHHHHH
Q 048318 104 VTSLN-SEAEREAFMQAGLDLCHTKPLSVDKILPLM 138 (145)
Q Consensus 104 l~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i 138 (145)
++-.+ .........+.|+-+++.||++...|+..+
T Consensus 86 lalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 86 LALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred EecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 44443 444566778899999999999999888744
No 98
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=97.11 E-value=0.022 Score=39.81 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=69.8
Q ss_pred ceEEEE----eCcHHHHHHHHHHHHHcCCeEEEEc---CHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcC
Q 048318 26 LFALVV----DDDCFIRTIHSMALKSLGFKVEVAE---NGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMG 96 (145)
Q Consensus 26 ~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~ 96 (145)
-+|++. |.|..=...+..+|+..||+|.... ..++.++.+.+ .+||+|.+...++.. ...++++.+++.+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~ 167 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-HKADIIGLSGLLVPSLDEMVEVAEEMNRRG 167 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEccchhccHHHHHHHHHHHHhcC
Confidence 456666 6666666778888899999988533 57778888877 689999999877642 3456788888877
Q ss_pred CcceEEEEeCCCCHHHHHH---HHHhCCceee
Q 048318 97 IKIKIVGVTSLNSEAEREA---FMQAGLDLCH 125 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~---~~~~g~~~~l 125 (145)
++++|++=+..-+...... +...|+|.|-
T Consensus 168 ~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~ 199 (213)
T cd02069 168 IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYV 199 (213)
T ss_pred CCCeEEEEChhcCHHHHhhhhccccCCCceEe
Confidence 7777765554445544432 2346999884
No 99
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=97.01 E-value=0.041 Score=45.06 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=80.7
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~ 95 (145)
+.+|++. +.|......+..+|+..||+|.. ..+.+++.+...+ ..+|+|.+...+... ....+++.+++.
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-NDVHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-cCCCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 3456554 44566668888889999999973 3467888888776 578988876544332 345677888877
Q ss_pred CC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 96 GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 96 ~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.. +++++ +++...+.....+...|+|.|+..-.+..+++..+.+.+
T Consensus 661 G~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 661 GREDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred CCCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 54 34443 554423344466788999999988888888888887766
No 100
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.75 E-value=0.009 Score=44.14 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE-eCCCCHHHHHHHHHhCCceeecC
Q 048318 49 GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV-TSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 49 g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l-~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
|..+..+.+..++-+. . ..-.+|++|..+- -..+.... .+...++++ ++..+......+++.|+.+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~----~~~~~~~~--p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRA-W--ARAPLVLVDADMA----EACAAAGL--PRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhc-c--ccCCeEEECchhh----hHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 4456666665554322 2 2367999986531 11111111 122334444 44567888999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 048318 128 PLSVDKILPLMEDL 141 (145)
Q Consensus 128 P~~~~~L~~~i~~~ 141 (145)
|.+..+|...+.++
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
No 101
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=96.69 E-value=0.058 Score=34.25 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCeEEEE--cCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 37 IRTIHSMALKSLGFKVEVA--ENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~--~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
-...+..++++.|+.+... ...++.++.+.....||+|.+....... ....+++.+|+..|++++++ .+.......
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~-GG~~~t~~p 82 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVV-GGPHATFFP 82 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEE-CCcchhhCH
Confidence 3456777888888776632 3556666666542469999999754443 45678889999888877764 443322233
Q ss_pred HH-HHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 114 EA-FMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 114 ~~-~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.. ....++ ||++.--....+...++.+
T Consensus 83 ~~~~~~~~~-D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 83 EEILEEPGV-DFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred HHHhcCCCC-CEEEECCcHHHHHHHHHHH
Confidence 33 233445 5655544444444444443
No 102
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.66 E-value=0.015 Score=39.69 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=53.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l 104 (145)
++||+||+...+-..|.++|+..|.++....+.......+.. ..||.|++.-.-..- +.-...+.+++....+||+=+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGV 80 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-LKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGV 80 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-cCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence 579999999999999999999999888866655433444554 569999998653221 111233344443335777765
Q ss_pred eC
Q 048318 105 TS 106 (145)
Q Consensus 105 ~~ 106 (145)
+=
T Consensus 81 CL 82 (191)
T COG0512 81 CL 82 (191)
T ss_pred Cc
Confidence 43
No 103
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.63 E-value=0.0065 Score=50.86 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=41.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~ 79 (145)
.+.+||++||++..+..+...|+..|+.|..+.+. ... ..||+|++|..
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~-~~~Dlvl~D~~ 736 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS-QEYDIFLTDNP 736 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC-CCCCEEEECCC
Confidence 45789999999999999999999999999988753 223 56999999988
No 104
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=96.47 E-value=0.093 Score=36.16 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=61.1
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcC--CcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMG--IKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~--~~~~iv~l 104 (145)
|.|..-...+..+|+..||+|... ...++.++.+.+ ..||+|.+...+... .-.++++.+++.. +.++|++=
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-EKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 344455567777888999998843 366778888877 689999999877543 3356778888763 34666543
Q ss_pred eCCCCHHHHHHHHHhCCceee
Q 048318 105 TSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l 125 (145)
+..-+.. -+...|+|.|-
T Consensus 174 G~~~~~~---~~~~~gad~~~ 191 (197)
T TIGR02370 174 GAPVTQD---WADKIGADVYG 191 (197)
T ss_pred ChhcCHH---HHHHhCCcEEe
Confidence 3334433 34577999984
No 105
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=96.41 E-value=0.087 Score=37.88 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEEEeCCCCHHHH
Q 048318 38 RTIHSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 38 ~~~l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~l~~~~~~~~~ 113 (145)
...++..|+..... ++.........+.+.. ..||.|++|.+....+-.++...++.. ..-.|+|=+ ...+...+
T Consensus 7 ~n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRv-p~~~~~~i 84 (256)
T PRK10558 7 PNKFKAALAAKQVQIGCWSALANPITTEVLGL-AGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEPVII 84 (256)
T ss_pred CHHHHHHHHcCCceEEEEEcCCCcHHHHHHHh-cCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHH
Confidence 34466677654322 2333344455666655 569999999999888877777776642 223455544 44577888
Q ss_pred HHHHHhCCceeecCCC-CHHHHHHHHH
Q 048318 114 EAFMQAGLDLCHTKPL-SVDKILPLME 139 (145)
Q Consensus 114 ~~~~~~g~~~~l~kP~-~~~~L~~~i~ 139 (145)
..+++.|+++++..-+ +.++....++
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 9999999999977544 4566655554
No 106
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.36 E-value=0.11 Score=37.66 Aligned_cols=98 Identities=7% Similarity=0.078 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEEEeCCCCHHHHHH
Q 048318 40 IHSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREA 115 (145)
Q Consensus 40 ~l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~l~~~~~~~~~~~ 115 (145)
.++..|+..... ++.........+.+.. ..||.|++|.+....+-.++...++.. ....|+|=+ ...+...+..
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~-~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRv-p~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRP-VEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH-cCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEEC-CCCCHHHHHH
Confidence 356666553322 3333344455566655 469999999999888777777666642 223455544 4557788899
Q ss_pred HHHhCCceeecCCCC-HHHHHHHHH
Q 048318 116 FMQAGLDLCHTKPLS-VDKILPLME 139 (145)
Q Consensus 116 ~~~~g~~~~l~kP~~-~~~L~~~i~ 139 (145)
+++.|+++++..-+. .++....++
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHH
Confidence 999999999876554 455554443
No 107
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.32 E-value=0.23 Score=35.35 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=63.2
Q ss_pred HcCCeEE-E-EcCHHHHHHHHHcCCCccEEEE--ecCCC--CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhC
Q 048318 47 SLGFKVE-V-AENGKEAVDLFRSGAKFDIVFI--DKEMP--VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 47 ~~g~~v~-~-~~~~~~al~~~~~~~~~dlvl~--d~~~~--~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
+.||.+. . ..|...+-+... ..+++|.- ...=. +....++++.+++. ..+|+|+=+.-.+.+....+++.|
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~~--~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelG 197 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLED--AGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELG 197 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHHH--cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcC
Confidence 4599977 4 445665555544 46888832 11101 12236888888876 578988777788999999999999
Q ss_pred Cceee-----cCCCCHHHHHHHHHHHHh
Q 048318 121 LDLCH-----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 121 ~~~~l-----~kP~~~~~L~~~i~~~~~ 143 (145)
++.++ .|.-++..+.......++
T Consensus 198 AdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 198 ADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred CCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 99996 444556666666655543
No 108
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.28 E-value=0.25 Score=35.27 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=63.1
Q ss_pred HcCCeEE--EEcCHHHHHHHHHcCCCccEEEE--ecCCC--CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhC
Q 048318 47 SLGFKVE--VAENGKEAVDLFRSGAKFDIVFI--DKEMP--VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 47 ~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~--d~~~~--~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
+.||.+. +..|...+-+... ..+++|.- ...=. +....++++.+++. ..+|+|+=+.-...+....+++.|
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~--~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelG 197 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEE--AGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELG 197 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHH--cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcC
Confidence 4599977 4446666655544 36888832 11001 12236788888876 578998888888999999999999
Q ss_pred Cceee-----cCCCCHHHHHHHHHHHH
Q 048318 121 LDLCH-----TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 121 ~~~~l-----~kP~~~~~L~~~i~~~~ 142 (145)
+++++ .|.-++..+.......+
T Consensus 198 AdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 198 ADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred CCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 99996 45455666666665544
No 109
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=96.12 E-value=0.2 Score=35.80 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=63.1
Q ss_pred HHHHHHHcC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-C-CcceEEEEeCCCCHHHHHHH
Q 048318 41 HSMALKSLG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-G-IKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 41 l~~~L~~~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~-~~~~iv~l~~~~~~~~~~~~ 116 (145)
++..|++.. +-++.........+.+.. ..+|.|++|++....+..++...++.. . ...++|=+ ...+...+..+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~-~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv-~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG-AGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRP-AIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh-cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEEC-CCCCHHHHHHH
Confidence 445555433 223333344455666655 569999999998877777777776653 2 23455544 44455678999
Q ss_pred HHhCCceeecC-CCCHHHHHHHHHH
Q 048318 117 MQAGLDLCHTK-PLSVDKILPLMED 140 (145)
Q Consensus 117 ~~~g~~~~l~k-P~~~~~L~~~i~~ 140 (145)
++.|+++++.. --+.++....++.
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999654 4567776666554
No 110
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=96.07 E-value=0.19 Score=35.99 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=63.0
Q ss_pred HHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEEEeCCCCHHHHHHH
Q 048318 41 HSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 41 l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~l~~~~~~~~~~~~ 116 (145)
++..|+..... ++.........+.+.. ..||.|++|.+....+-.++...++.. ..-.|+|=+ ...+...+..+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRv-p~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL-AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRP-PWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh-cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHH
Confidence 44555543322 3333344455666665 569999999999888877777777653 223455544 44577888999
Q ss_pred HHhCCceeecCCC-CHHHHHHHHH
Q 048318 117 MQAGLDLCHTKPL-SVDKILPLME 139 (145)
Q Consensus 117 ~~~g~~~~l~kP~-~~~~L~~~i~ 139 (145)
++.|+++++..-+ +.++....++
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHH
Confidence 9999999987544 3555555553
No 111
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=95.88 E-value=0.37 Score=37.94 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHHcC-CeEEEEc------CHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEe
Q 048318 34 DCFIRTIHSMALKSLG-FKVEVAE------NGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 34 ~~~~~~~l~~~L~~~g-~~v~~~~------~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.|.-...+...|++.| ++|.... +.++..+.+.. ..||+|.+...-+.. ...++++.+|+..|+++|| ++
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~-~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV-~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA-HCPDLVLITAITPAIYIACETLKFARERLPNAIIV-LG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh-cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEE-Ec
Confidence 4666788888898889 5776543 33444555655 579999997654433 3457788888888888776 45
Q ss_pred CCCCHHHHHHHHH-hCCceeecCCCCHHHHHHHHHHHH
Q 048318 106 SLNSEAEREAFMQ-AGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 106 ~~~~~~~~~~~~~-~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+........+.+. ...-||++.--....+...++.+.
T Consensus 99 G~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 99 GIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred CCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 5443333344443 333456666555555555555543
No 112
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.78 E-value=0.23 Score=30.69 Aligned_cols=92 Identities=20% Similarity=0.148 Sum_probs=60.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..+.++|.++...+.+. ..|+.+.... +-.+.++...- ...+.+++.... +......+..+++..+..++++.
T Consensus 22 ~~vvvid~d~~~~~~~~----~~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 22 IDVVVIDRDPERVEELR----EEGVEVIYGDATDPEVLERAGI-EKADAVVILTDD-DEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SEEEEEESSHHHHHHHH----HTTSEEEES-TTSHHHHHHTTG-GCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CEEEEEECCcHHHHHHH----hcccccccccchhhhHHhhcCc-cccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEEE
Confidence 46899999988865544 5567776554 33445555544 458888887642 23445666777887888888766
Q ss_pred eCCCCHHHHHHHHHhCCceee
Q 048318 105 TSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l 125 (145)
+. +......+.+.|++..+
T Consensus 96 ~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 96 VN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp ES--SHHHHHHHHHTT-SEEE
T ss_pred EC--CHHHHHHHHHCCcCEEE
Confidence 65 55556677888998775
No 113
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.52 E-value=0.41 Score=38.21 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=59.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+..++++|.|+...+.++ +.|+.+.+.+ +.++.++...- .+.|.+++-..-.+ +....+...++..++.++++
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~-~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGY-EAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChH-HHHHHHHHHHHHCCCCeEEE
Confidence 345566666665544443 2355555443 33344444433 35676766543221 22245556677778888887
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
-+. +.+......+.|+|..+ .| ..++.+.+.+.+
T Consensus 514 r~~--~~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l 547 (558)
T PRK10669 514 RAH--YDDEVAYITERGANQVV-MG--EREIARTMLELL 547 (558)
T ss_pred EEC--CHHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHh
Confidence 654 44555666789998776 34 355555555544
No 114
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.33 E-value=0.57 Score=32.22 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=60.0
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCC--------CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--------NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--------~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+..++.+.... .+|.|.++.-.+.. .|++.++.+++..+.+||++.++- +.+....++..|++.+.
T Consensus 110 ~~~t~~e~~~a~~~--gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 110 STHTLEEAAAALAA--GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVA 186 (212)
T ss_pred eCCCHHHHHHHhHc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 45566777766543 58999887544432 358888998876655888876655 67778899999999986
Q ss_pred c-----CCCCHHHHHHHHHHHHh
Q 048318 126 T-----KPLSVDKILPLMEDLMK 143 (145)
Q Consensus 126 ~-----kP~~~~~L~~~i~~~~~ 143 (145)
. +.-++.+....+...++
T Consensus 187 ~gs~i~~~~d~~~~~~~l~~~~~ 209 (212)
T PRK00043 187 VVSAITGAEDPEAAARALLAAFR 209 (212)
T ss_pred EeHHhhcCCCHHHHHHHHHHHHh
Confidence 3 44456666666655543
No 115
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.29 E-value=0.71 Score=37.32 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=54.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
..++++|.|+...+.++ +.|+.+...+ +-.+.++...- .+.+++++-.+.+ .+....+...|+.+|+.+|++-
T Consensus 424 ~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi-~~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 424 MRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGA-EKAEAIVITCNEP-EDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCC-ccCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence 34566666665544333 2455555443 33333443332 3466666654322 3345566777888888888765
Q ss_pred eCCCCHHHHHHHHHhCCceeec
Q 048318 105 TSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+. +........+.|++..+.
T Consensus 498 a~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 498 AR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred eC--CHHHHHHHHhCCCCEEEc
Confidence 44 667778889999998863
No 116
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.96 E-value=0.93 Score=33.07 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=64.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHH---cC--CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--Cc
Q 048318 27 FALVVDDDCFIRTIHSMALKS---LG--FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IK 98 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~---~g--~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~ 98 (145)
.|||-|+|-... .+...++. .. ..+. .+.+.+++.+.+.. .+|+|++|= |+..+-.+..+.++... ++
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a--gaDiI~LDn-~~~e~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA--GADIIMLDN-MTPEEIREVIEALKREGLRER 231 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc--CcCEEEECC-CCHHHHHHHHHHHHhcCcCCC
Confidence 478888886655 56666543 22 2233 78899999999875 589999983 43333444555565543 34
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+ .+..++.-+.+.+.+....|+|.+-.
T Consensus 232 ~-~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 232 V-KIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred E-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3 45567778888999999999988753
No 117
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.84 Score=32.42 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCeEE-EEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEEEeCCCCHHHHHH
Q 048318 40 IHSMALKSLGFKVE-VAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREA 115 (145)
Q Consensus 40 ~l~~~L~~~g~~v~-~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~l~~~~~~~~~~~ 115 (145)
.++..|......+- |.. ...-..+.+.. ..||.+++|.+.-..+...++.+++.. .+..|+|= ....+...+..
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~-aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR-~p~g~~~~Ikq 84 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT-AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVR-PPVGDPVMIKQ 84 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh-cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeee-CCCCCHHHHHH
Confidence 35566654434443 333 33334556655 679999999999888999999999863 33456654 44456778999
Q ss_pred HHHhCCceeecCCCCH
Q 048318 116 FMQAGLDLCHTKPLSV 131 (145)
Q Consensus 116 ~~~~g~~~~l~kP~~~ 131 (145)
+++.|+..+|..=++.
T Consensus 85 ~LD~GAqtlliPmV~s 100 (255)
T COG3836 85 LLDIGAQTLLIPMVDT 100 (255)
T ss_pred HHccccceeeeeccCC
Confidence 9999999998754543
No 118
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=94.94 E-value=1 Score=34.42 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=63.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeE---------------EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKV---------------EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v---------------~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~ 89 (145)
+.+.+|+.+++.....++..++..|... ....+..+...... ..|++++.-...+.-|...+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~---~aDi~~v~~S~~e~~g~~~l 338 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA---IADIAFVGGSLVKRGGHNPL 338 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH---hCCEEEECCCcCCCCCCCHH
Confidence 4566777887766567777777766542 22223344443333 25887775444333344455
Q ss_pred HHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 90 REIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 90 ~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+.+.. .+|+|+-....+.....+.... .+++..|-+.++|...+.++++
T Consensus 339 EAma~---G~PVI~g~~~~~~~e~~~~~~~--~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 339 EPAAF---GVPVISGPHTFNFKEIFERLLQ--AGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHh---CCCEEECCCccCHHHHHHHHHH--CCCeEEECCHHHHHHHHHHHhc
Confidence 55443 5677743222333343333321 2455568889999999988764
No 119
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.89 E-value=0.35 Score=35.43 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=62.6
Q ss_pred eEEEEeCcHHHHHHHHHHHH----HcC--CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALK----SLG--FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~----~~g--~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.|||-|+|-...-.+...+. ..+ ..+. .+.+.+|+.+.+.. .+|+|.+| +++-.+--+.++.++...+++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~--GaD~I~LD-n~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY--GADIIMLD-NMPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHHHhcCCCe
Confidence 57777777555544555443 234 3344 78899999998864 58999999 333222333445555445676
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
++. .++.-+.+...+....|+|.+-
T Consensus 245 ~le-AsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 245 KIE-ASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred EEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 654 5666688888899999998874
No 120
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.76 E-value=0.27 Score=33.12 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=62.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cC--CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LG--FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g--~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.++|-+++-...-.+...++. .+ ..+. .+.+.+++.+.+.. .+|.|.+|-- +..+--+.++.++...+.+
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~--g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA--GADIIMLDNM-SPEDLKEAVEELRELNPRV 128 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT--T-SEEEEES--CHHHHHHHHHHHHHHTTTS
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh--CCCEEEecCc-CHHHHHHHHHHHhhcCCcE
Confidence 477777777766545555442 22 2243 78899999998875 4999999953 2233445566666666664
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+++.-+.+.+.+....|+|.+-
T Consensus 129 -~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 -KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp -EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred -EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4567888888889999999998774
No 121
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.75 E-value=0.98 Score=33.72 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCCC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVMN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+.+.+++..+..+|+|.+|...+..+ ..++++.+++..|++|+++ ..-.+.+....+.++|+|...
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 34444444322469999999887544 5678999998887777664 344578888999999999975
No 122
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=94.74 E-value=0.36 Score=30.15 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=51.4
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEc---CHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCC-cceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAE---NGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGI-KIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~-~~~iv~l 104 (145)
+.++.-...+...++..||++.... ..++..+.+.. ..||+|.+....... .....+..+++..+ ++++++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-cCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5666777888888999999988543 55666666666 679999998766543 34566667776666 7777643
No 123
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.68 E-value=0.53 Score=28.46 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=53.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEE------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVA------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
+||||.........++..+++.|+...+. ......+...- ..+|+|++=.+.-.=+....++..-+. .++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~~vsH~~~~~vk~~akk-~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTDYVSHNAMWKVKKAAKK-YGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeCCcChHHHHHHHHHHHH-cCCc
Confidence 47999998889999999999999998877 22222233222 247999886655443444444444332 2677
Q ss_pred EEEEeCCCCHHHHHHHH
Q 048318 101 IVGVTSLNSEAEREAFM 117 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~ 117 (145)
++. +...+......++
T Consensus 78 ~~~-~~~~~~~~l~~~l 93 (97)
T PF10087_consen 78 IIY-SRSRGVSSLERAL 93 (97)
T ss_pred EEE-ECCCCHHHHHHHH
Confidence 775 4434444444443
No 124
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.59 E-value=0.5 Score=34.40 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=64.2
Q ss_pred eEEEEeCcHHHHH---HHHHHHH---Hc--CCeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC
Q 048318 27 FALVVDDDCFIRT---IHSMALK---SL--GFKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97 (145)
Q Consensus 27 ~iLii~~~~~~~~---~l~~~L~---~~--g~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~ 97 (145)
.|||-|+|-...- .+...++ +. +..+ +.+.+.+++.+.+.. .+|+|++| +|+..+-.+..+.+++..+
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~--GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA--SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc--CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 4677777655543 3444433 22 2223 478899999999865 58999999 4554455555666654455
Q ss_pred cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 98 KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
++ .+..++.-+.+.+......|+|-+.
T Consensus 235 ~~-~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 235 IP-TLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 54 4567888899999999999998764
No 125
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=94.56 E-value=0.63 Score=33.38 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=55.2
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
+|-+.-.++.....+...|...-|.+..+.+.++.+..+.. +...|++++.... ....+...+.+.+--.|.|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCccccEEEEe
Confidence 35566677888889999998878999999999999999974 3469999999854 4566788888887788999887
Q ss_pred CC
Q 048318 106 SL 107 (145)
Q Consensus 106 ~~ 107 (145)
..
T Consensus 79 ~~ 80 (283)
T PF07688_consen 79 SS 80 (283)
T ss_dssp --
T ss_pred cC
Confidence 64
No 126
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.54 E-value=0.44 Score=34.92 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=63.0
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cC-C-eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LG-F-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g-~-~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.|||-|+|-...-.+...++. .+ . ..+.+.+.+|+.+.+.. ..|+|++| +|+-.+--+.++.++...+++
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~--gaDiI~LD-nm~~e~vk~av~~~~~~~~~v- 247 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE--GAELVLLD-NFPVWQTQEAVQRRDARAPTV- 247 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc--CCCEEEeC-CCCHHHHHHHHHHHhccCCCE-
Confidence 466767665444334444432 22 2 24478899999999865 58999999 554333444555555555554
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..++.-+.+.+.+....|+|.+-.
T Consensus 248 ~ieaSGGI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 248 LLESSGGLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 45577788999999999999988753
No 127
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.41 E-value=0.84 Score=37.07 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=57.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+..+.++|.|+...+.+++ .|+.+.... +-.+.++...- .+.+++++-.+-+ ......+...|+.+|+.++++
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi-~~A~~vvv~~~d~-~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGA-AKAEVLINAIDDP-QTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCC-CcCCEEEEEeCCH-HHHHHHHHHHHHhCCCCeEEE
Confidence 4456677777766555543 466665544 33334443332 3567777765322 234556677788888988876
Q ss_pred EeCCCCHHHHHHHHHhCCceee
Q 048318 104 VTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l 125 (145)
-+ .+........+.|++...
T Consensus 497 Ra--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 497 RA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EE--CCHHHHHHHHHCCCCEEe
Confidence 44 456667778889999774
No 128
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.99 E-value=1.4 Score=30.69 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=58.4
Q ss_pred HHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecC-------CCCCCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 38 RTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKE-------MPVMNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 38 ~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~-------~~~~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
...+....++ .+..+. .+.+.+++...... .+|++.+... .......+.++.+++.. .+|+++..+-.
T Consensus 107 ~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI~ 183 (221)
T PRK01130 107 LAELVKRIKEYPGQLLMADCSTLEEGLAAQKL--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIAEGRIN 183 (221)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEEECCCC
Confidence 3344445555 566654 56678887655543 5898866421 11233577888888754 68988877777
Q ss_pred CHHHHHHHHHhCCceeecC
Q 048318 109 SEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~k 127 (145)
+.+....++..|++.++.-
T Consensus 184 t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 184 TPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8899999999999998643
No 129
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=93.83 E-value=0.96 Score=32.86 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=62.5
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cCCe--EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LGFK--VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g~~--v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
-|||=|+|-...-.++..++. .+|. +. .+.+.+|+.+.+.. .+|+|++| +|+...-.+..+.+ ... .-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a--gaDiImLD-Nm~~e~~~~av~~l-~~~-~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA--GADIIMLD-NMSPEELKEAVKLL-GLA-GR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc--CCCEEEec-CCCHHHHHHHHHHh-ccC-Cc
Confidence 356666666666656666653 3553 34 78899999999875 59999999 34333333344443 122 23
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.++-.++.-+.+.+......|+|-+-.
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVISV 261 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEEEe
Confidence 455577778888899999999987743
No 130
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.80 E-value=1.4 Score=30.01 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=54.7
Q ss_pred cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 48 LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 48 ~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.|..+. -+.+.+|+.+.... .+|.+-++-. +. .|.++++.++...+++|+++.++- +.+....+++.|++.+-.
T Consensus 96 ~~~~~i~gv~t~~e~~~A~~~--Gad~i~~~p~-~~-~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 96 AGIPLLPGVATPTEIMQALEL--GADIVKLFPA-EA-VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGG 170 (190)
T ss_pred cCCcEECCcCCHHHHHHHHHC--CCCEEEEcCC-cc-cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEE
Confidence 344433 56688888887754 5899888532 22 388999999887777888876555 788899999999888754
Q ss_pred C
Q 048318 127 K 127 (145)
Q Consensus 127 k 127 (145)
-
T Consensus 171 ~ 171 (190)
T cd00452 171 G 171 (190)
T ss_pred c
Confidence 3
No 131
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.77 E-value=0.96 Score=27.96 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=58.2
Q ss_pred eEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHH-HHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~-~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+|.+|+-...-...+..+... .++.+. .+....+..+ .... .... .+-| - -+.+....++.-+|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~-------~---~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTD-------L---EELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESS-------H---HHHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhH-------H---HHHHHhhcCCEEEEe
Confidence 566676666555555555554 356655 3333333222 2222 2223 2222 1 122222234544444
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCC--CHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPL--SVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~~~~~ 143 (145)
.......+....+++.|..-++-||+ +.+++.+.++..-+
T Consensus 70 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 70 TPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp SSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 44445777788899999999999998 67777777765543
No 132
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.73 E-value=1.6 Score=30.49 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=57.1
Q ss_pred HHHHHHcCCe-EEEEcCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHH
Q 048318 42 SMALKSLGFK-VEVAENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ 118 (145)
Q Consensus 42 ~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~ 118 (145)
...|.+.+.- +....+.+++++..+. ....+++ ++.+....+.+.++.+++.++++ +|-...-.+......+.+
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHH
Confidence 3455555533 5577788887776542 1235544 44454557888999998877653 333444457788888999
Q ss_pred hCCceeecCCCCHHHHHHH
Q 048318 119 AGLDLCHTKPLSVDKILPL 137 (145)
Q Consensus 119 ~g~~~~l~kP~~~~~L~~~ 137 (145)
+|++.++..-++. +++..
T Consensus 86 aGA~FivsP~~~~-~vi~~ 103 (212)
T PRK05718 86 AGAQFIVSPGLTP-PLLKA 103 (212)
T ss_pred cCCCEEECCCCCH-HHHHH
Confidence 9998776544555 44443
No 133
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.62 E-value=1.8 Score=30.73 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=57.5
Q ss_pred HHHHHHcCCeEEE-Ec-CHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 42 SMALKSLGFKVEV-AE-NGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 42 ~~~L~~~g~~v~~-~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
...|.+.||.|.. ++ |.--|-++. + .....| +-+.-|=++ ....++.+++.. ++|+|+=++-...++..
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~akrL~-d-~Gcaav-MPlgsPIGSg~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLAKRLE-D-AGCAAV-MPLGSPIGSGRGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHHHHHH-H-TT-SEB-EEBSSSTTT---SSTHHHHHHHHHHG-SSSBEEES---SHHHHH
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHH-H-CCCCEE-EecccccccCcCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHH
Confidence 3346678999983 33 333344433 3 334443 444444332 346778887655 88999888889999999
Q ss_pred HHHHhCCceeec-----CCCCHHHHHHHHHHHH
Q 048318 115 AFMQAGLDLCHT-----KPLSVDKILPLMEDLM 142 (145)
Q Consensus 115 ~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~ 142 (145)
.+++.|+|+.+. +--++-.+.+..+...
T Consensus 192 ~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV 224 (247)
T PF05690_consen 192 QAMELGADAVLVNTAIAKAKDPVAMARAFKLAV 224 (247)
T ss_dssp HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHcCCceeehhhHHhccCCHHHHHHHHHHHH
Confidence 999999999975 3555666666655443
No 134
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.62 E-value=0.88 Score=33.10 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=60.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cCC--eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LGF--KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g~--~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.|||-|+|-.....+...++. .++ .+. .+.+.+|+.+.+.. .+|+|.+|= ++-..-.+.++.++...+++
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~--GaDiI~LDn-~~~e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA--GADIVMCDN-MSVEEIKEVVAYRNANYPHV 230 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHHhhccCCCe
Confidence 467777775555555555542 343 233 78899999999875 589999873 21112222333333333454
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
. +..++.-+.+.+.+....|+|.+..
T Consensus 231 ~-ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 231 L-LEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEEe
Confidence 4 4456667999999999999998854
No 135
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=93.38 E-value=0.4 Score=32.67 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHH-cCCCccEEEEecCCCCCCH-HHHHHHHHh
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFR-SGAKFDIVFIDKEMPVMNG-IEATREIRS 94 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~-~~~~~dlvl~d~~~~~~~~-~~~~~~l~~ 94 (145)
+|..+|.++.....+++.++..+.. +. ...+...++.... ....||+|++|-=-..... .+++..+.+
T Consensus 67 ~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 67 SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAE 139 (183)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHH
Confidence 6899999999999999999988743 33 5567777766552 2357999999942212222 557777764
No 136
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=93.36 E-value=1.9 Score=30.09 Aligned_cols=83 Identities=20% Similarity=0.159 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHcCCCccEEEEecCCCC---------CCHHHHHHHHHh-cCCcceEEEEeCCCCHHHHHH---HHHhCCc
Q 048318 56 ENGKEAVDLFRSGAKFDIVFIDKEMPV---------MNGIEATREIRS-MGIKIKIVGVTSLNSEAEREA---FMQAGLD 122 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~dlvl~d~~~~~---------~~~~~~~~~l~~-~~~~~~iv~l~~~~~~~~~~~---~~~~g~~ 122 (145)
.+....++.... ..+|.|++|++... .+-.+++..++. ......+++=....+.....+ ++..|++
T Consensus 8 ~~~~~~~~~a~~-~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 8 ANSPKMLEKAAA-SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp STSHHHHHHHHT-TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHh-cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 345555666665 57999999998765 333445555554 222233443333344444555 8999999
Q ss_pred eeecCCC-CHHHHHHHHH
Q 048318 123 LCHTKPL-SVDKILPLME 139 (145)
Q Consensus 123 ~~l~kP~-~~~~L~~~i~ 139 (145)
+++..-+ +.+++...+.
T Consensus 87 gI~lP~ves~~~~~~~~~ 104 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVA 104 (221)
T ss_dssp EEEETT--SHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHH
Confidence 9976544 4555555444
No 137
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=93.33 E-value=1.6 Score=31.77 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=60.0
Q ss_pred eEEEEeCcHHHHHHH--HHHH---HH-cC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 27 FALVVDDDCFIRTIH--SMAL---KS-LG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 27 ~iLii~~~~~~~~~l--~~~L---~~-~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
.||+-|+|-...-.. .+.+ ++ .+ ..-..+.+.+++.+.... ..|.|.+|--.| .+-.+..+.++...++
T Consensus 154 ~vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~--gaD~I~ld~~~p-~~l~~~~~~~~~~~~~ 230 (272)
T cd01573 154 TILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA--GADILQLDKFSP-EELAELVPKLRSLAPP 230 (272)
T ss_pred ceEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc--CCCEEEECCCCH-HHHHHHHHHHhccCCC
Confidence 377777774433221 2222 22 22 223478899999888754 589999994433 2233455555555567
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+|+++.. .-+.+...+..+.|+|.+..
T Consensus 231 i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 231 VLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred ceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 8877544 55778888999999998853
No 138
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=93.18 E-value=5.5 Score=35.05 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=68.0
Q ss_pred ceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhcC
Q 048318 26 LFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSMG 96 (145)
Q Consensus 26 ~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~~ 96 (145)
-+|++. |-|..=...+.-+|+..||+|.-. ...++.++.+.+ ..||+|-+..-+.. + ...++++.+++.+
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e-~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g 811 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD-HNADVIGLSGLITPSLDEMKEVAEEMNRRG 811 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-hCCCEEEEcCcccccHHHHHHHHHHHHhcC
Confidence 356666 455555566666788899998843 256777888877 68999999876643 3 3457888998888
Q ss_pred CcceEEEEeCCCCHHHHHHH---HHhCCceee
Q 048318 97 IKIKIVGVTSLNSEAEREAF---MQAGLDLCH 125 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~---~~~g~~~~l 125 (145)
+.+||++=++..+......- ...|+|.|-
T Consensus 812 ~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~ 843 (1178)
T TIGR02082 812 ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYV 843 (1178)
T ss_pred CCceEEEeccccchhHHHhhhhhhccCCeEEe
Confidence 88888866665566554321 123888884
No 139
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.03 E-value=0.85 Score=35.04 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=45.3
Q ss_pred CCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 69 AKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 69 ~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
...|+|.+|...+. ..-.++++.+++..|+++++ +..-.+.+....+.++|+|.+.
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 46999999998764 45568889999888887754 5677788889999999999975
No 140
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.94 E-value=2 Score=29.21 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=48.3
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC--------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV--------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~--------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+.+++.+... ...|.+.++.-.+. ..|++.++.+.+..+.+|++++++- +.+....+...|++.+.
T Consensus 102 s~h~~~e~~~a~~--~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 102 STHNLEELAEAEA--EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred eCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 5667777665443 36899988765442 2368888888765556888776555 57778888899998874
No 141
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.94 E-value=1 Score=33.67 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=44.0
Q ss_pred CccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 70 KFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 70 ~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.+|+|++|...... .-.+.++.+|+..|..+| +-..-.+.+....+..+|||.+.+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~v-iaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTI-MAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 59999999876543 346788899987776544 4566788999999999999998643
No 142
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.91 E-value=1.1 Score=31.07 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHcC---CCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRSG---AKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~~---~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.-+|.-+|-++...+..+..++..|+. +. ...+..+.+..+... ..||+||+|..- .+-...++.+..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~ 143 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFEKALP 143 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHHHHHH
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHHHHhh
Confidence 457999999999999999999988863 55 667888888776542 259999999853 234444544433
No 143
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=92.88 E-value=0.75 Score=31.36 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=47.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC--CCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM--PVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~--~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
||+||........+...|+..|+.+....+....++.+.. ..||.|++.-.- +...+. -.+.++......|++-++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iilsgGpg~p~~~~~-~~~~i~~~~~~~PvLGIC 79 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-LLPLLIVISPGPCTPNEAGI-SLEAIRHFAGKLPILGVC 79 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhcch-hHHHHHHhccCCCEEEEC
Confidence 7999999999999999999999988766633222333433 458977774321 111121 133333322356777665
Q ss_pred C
Q 048318 106 S 106 (145)
Q Consensus 106 ~ 106 (145)
-
T Consensus 80 ~ 80 (188)
T TIGR00566 80 L 80 (188)
T ss_pred H
Confidence 4
No 144
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.78 E-value=2.3 Score=29.58 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=56.5
Q ss_pred HHHHHHHcC-CeEE-EEcCHHHHHHHHHcCCCccEEEEecC-C------CCCCHHHHHHHHHhcCCcceEEEEeCCCCHH
Q 048318 41 HSMALKSLG-FKVE-VAENGKEAVDLFRSGAKFDIVFIDKE-M------PVMNGIEATREIRSMGIKIKIVGVTSLNSEA 111 (145)
Q Consensus 41 l~~~L~~~g-~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~-~------~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~ 111 (145)
+.+.+++.| ..+. .+.+.+++...... .+|.+.+... . .....++.++.+++.. ++|+++.++-.+.+
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~ 190 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAKL--GFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPE 190 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHHc--CCCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHH
Confidence 333444444 4443 56677887666554 5888765321 1 1234578888888754 68998877777889
Q ss_pred HHHHHHHhCCceeecC
Q 048318 112 EREAFMQAGLDLCHTK 127 (145)
Q Consensus 112 ~~~~~~~~g~~~~l~k 127 (145)
....++..|++.++.-
T Consensus 191 ~~~~~l~~GadgV~vG 206 (219)
T cd04729 191 QAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 9999999999998653
No 145
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=92.69 E-value=0.24 Score=34.05 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=39.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~ 79 (145)
||+||++..+...+...|++.|+.+......+..++.+.. ..||.|++.-.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iIlsgG 52 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN-MKPDFLMISPG 52 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh-CCCCEEEECCC
Confidence 7999999999999999999999998876655333344444 46898888643
No 146
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.53 E-value=1 Score=33.73 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 69 AKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
..+|+|++|...... .-.++++.+|+..|+++|| ..+-.+.+...++..+|||..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 368999999876433 3467889999888887754 577788889999999999986
No 147
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=92.28 E-value=2.4 Score=28.48 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CCeEEEE-------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GFKVEVA-------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~~v~~~-------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+.+|.++...+...+.+...|+.. |..+.-. .+..+.++.+.. ..||+|++.+..|.+. .++...++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~-~~pdiv~vglG~PkQE--~~~~~~~~~ 122 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA-SGADILFVGLGAPKQE--LWIARHKDR 122 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEECCCCHHH--HHHHHHHHH
Confidence 578899999999999988888765 4554431 123334667766 5799999999887644 345566654
Q ss_pred C
Q 048318 96 G 96 (145)
Q Consensus 96 ~ 96 (145)
.
T Consensus 123 l 123 (171)
T cd06533 123 L 123 (171)
T ss_pred C
Confidence 4
No 148
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=92.25 E-value=0.57 Score=31.95 Aligned_cols=77 Identities=21% Similarity=0.143 Sum_probs=48.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEe
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
||+||+...+...+...|+..|+.+..+...+..++.+.. ..||.|++.-.-.. ..+. ....++......|++-++
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iils~GPg~p~~~~~-~~~~~~~~~~~~PiLGIC 79 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA-LKPQKIVISPGPCTPDEAGI-SLDVIRHYAGRLPILGVC 79 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCEEEEcCCCCChHHCCc-cHHHHHHhcCCCCEEEEC
Confidence 7999999999999999999999888866654322333433 46898888653321 1221 122233222356776665
Q ss_pred C
Q 048318 106 S 106 (145)
Q Consensus 106 ~ 106 (145)
-
T Consensus 80 l 80 (187)
T PRK08007 80 L 80 (187)
T ss_pred H
Confidence 3
No 149
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.24 E-value=3.6 Score=30.44 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=59.4
Q ss_pred HHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCC-----CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 41 HSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEM-----PVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 41 l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~-----~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
+-..++..|..+. .+.+.+++...... ..|.|++.-.- ...+.+.+++++++.. ++|+|+-.+-.+.....
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~--GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA--GADAVIAEGMESGGHIGELTTMALVPQVVDAV-SIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc--CCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHH
Confidence 4445666687765 66788887666554 58998874321 1234688888888643 58998877788888899
Q ss_pred HHHHhCCceeec
Q 048318 115 AFMQAGLDLCHT 126 (145)
Q Consensus 115 ~~~~~g~~~~l~ 126 (145)
.++..|++.+..
T Consensus 178 ~al~~GA~gV~i 189 (307)
T TIGR03151 178 AAFALGAEAVQM 189 (307)
T ss_pred HHHHcCCCEeec
Confidence 999999998864
No 150
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.22 E-value=2.2 Score=31.30 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cCC--eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LGF--KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g~--~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.|||-|+|-...-.+...++. .++ .+. .+.+.+++.+.+.. .+|+|++| +|+..+--+..+.++. .
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a--gaDiImLD-nmspe~l~~av~~~~~---~- 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA--GADIIMLD-NMSLEQIEQAITLIAG---R- 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHhcC---c-
Confidence 578888887666555555542 232 344 78899999999875 58999998 3332233333333332 2
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.++-.++.-+.+.+.+....|+|-+-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 35567778899999999999998774
No 151
>PRK05637 anthranilate synthase component II; Provisional
Probab=92.14 E-value=1.6 Score=30.31 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=48.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l 104 (145)
.+|++||........+...|+..|+.+..+..... ++.+.. ..||.|++.-.-... +.....+.++......|++-+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~-~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI 79 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA-ANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI 79 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh-cCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE
Confidence 46999999999999999999999988876664322 233333 468988884322111 111223344332235677665
Q ss_pred eC
Q 048318 105 TS 106 (145)
Q Consensus 105 ~~ 106 (145)
+-
T Consensus 80 Cl 81 (208)
T PRK05637 80 CL 81 (208)
T ss_pred cH
Confidence 43
No 152
>PLN02335 anthranilate synthase
Probab=92.14 E-value=1.1 Score=31.43 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=49.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~ 103 (145)
+.+||++|........+...|+..|+.+..+......++.+.. ..||.|++.-.-... +.-...+.++......|++-
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~-~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLG 96 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR-KNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFG 96 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEE
Confidence 4578999988888999999999999888766542111232333 358888876432211 11123444444444678776
Q ss_pred EeC
Q 048318 104 VTS 106 (145)
Q Consensus 104 l~~ 106 (145)
++-
T Consensus 97 ICl 99 (222)
T PLN02335 97 VCM 99 (222)
T ss_pred ecH
Confidence 654
No 153
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=92.06 E-value=0.34 Score=33.06 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=48.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CC--HHHHHHHHHhcCCcceEEE
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MN--GIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~--~~~~~~~l~~~~~~~~iv~ 103 (145)
||+||+.......+...|+..|+.+..+.+..-.++.+.. ..||.|++.-.-.+ .+ ...+++.+ ....|++-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~iilsgGP~~~~~~~~~~~~i~~~---~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ-LAPSHLVISPGPCTPNEAGISLAVIRHF---ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCeEEEcCCCCChHhCCCchHHHHHh---cCCCCEEE
Confidence 7999999999999999999999988876644322333444 45898887643211 12 22333332 23567766
Q ss_pred EeC
Q 048318 104 VTS 106 (145)
Q Consensus 104 l~~ 106 (145)
++-
T Consensus 78 IC~ 80 (191)
T PRK06774 78 VCL 80 (191)
T ss_pred ECH
Confidence 653
No 154
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.05 E-value=1 Score=31.11 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=33.8
Q ss_pred EEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHH
Q 048318 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135 (145)
Q Consensus 75 l~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~ 135 (145)
++++.+...+..+.++.+++..+++ +|=...-.+.+....+.++|++..+. |...+++.
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivS-P~~~~~v~ 94 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVS-PGFDPEVI 94 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEE-SS--HHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEEC-CCCCHHHH
Confidence 4555555566777888777766653 23344445777788888888876655 43333333
No 155
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.98 E-value=1.1 Score=32.17 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhcCCcceEEEEeCCCC------HHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 84 NGIEATREIRSMGIKIKIVGVTSLNS------EAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l~~~~~------~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+.++.++.+|+....+|++.++-... +.....+.++|++.++......++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 34566666665445667666555443 56677778888888877655555555544433
No 156
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.90 E-value=3.8 Score=29.99 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=61.5
Q ss_pred ceEEEEeCcHHHH--H--HHHHHHH----HcCC--eE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVVDDDCFIR--T--IHSMALK----SLGF--KV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~~~--~--~l~~~L~----~~g~--~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
-.|||-|+|-... - .+...++ ..++ .+ +.+.+.+++.+.+.. .+|+|++| +|+..+-.+.++.++.
T Consensus 160 d~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~--gaDiImLD-n~s~e~l~~av~~~~~ 236 (281)
T PRK06543 160 DAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA--GVDTIMLD-NFSLDDLREGVELVDG 236 (281)
T ss_pred ceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc--CCCEEEEC-CCCHHHHHHHHHHhCC
Confidence 3578888886643 1 2444443 2343 34 489999999998865 58999998 3332233333343332
Q ss_pred cCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 95 MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
. ..+-.++.-+.+.+.+....|+|-+-.
T Consensus 237 ---~-~~leaSGgI~~~ni~~yA~tGVD~Is~ 264 (281)
T PRK06543 237 ---R-AIVEASGNVNLNTVGAIASTGVDVISV 264 (281)
T ss_pred ---C-eEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 2 356678888999999999999987753
No 157
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.85 E-value=3.9 Score=29.95 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhcCCcceEE--EEeCCCCHHHHHHHHHhCCceee-----cCCCCHHHHHHHHHHHHh
Q 048318 84 NGIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCH-----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv--~l~~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~L~~~i~~~~~ 143 (145)
.++++++.+++.. .+|+| ..+.-.+++....+++.|++.++ .|.-++.+....+...+.
T Consensus 184 ~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 184 VPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 5788888888754 58888 55666699999999999999996 444467777777766554
No 158
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=91.78 E-value=3.5 Score=29.33 Aligned_cols=96 Identities=10% Similarity=0.045 Sum_probs=61.3
Q ss_pred HHHHHHcCCeEEEEcCHHH-HHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHHhcCCcceEEEEeCCCCHHHHHH
Q 048318 42 SMALKSLGFKVEVAENGKE-AVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIRSMGIKIKIVGVTSLNSEAEREA 115 (145)
Q Consensus 42 ~~~L~~~g~~v~~~~~~~~-al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~ 115 (145)
...|-+.||.|....+.+- .-+.+.+ .. -..++-|.-|=++ ....++.|++.. .+|+|+=++-...+....
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee-~G-caavMPl~aPIGSg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~ 199 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEE-AG-CAAVMPLGAPIGSGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQ 199 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHh-cC-ceEeccccccccCCcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHH
Confidence 3456678999984333332 2233333 23 3445555555333 346777777765 899998888899999999
Q ss_pred HHHhCCceeecC-----CCCHHHHHHHHHH
Q 048318 116 FMQAGLDLCHTK-----PLSVDKILPLMED 140 (145)
Q Consensus 116 ~~~~g~~~~l~k-----P~~~~~L~~~i~~ 140 (145)
+++.|+|..+.. --++-.+.+....
T Consensus 200 aMElG~DaVL~NTAiA~A~DPv~MA~Af~~ 229 (262)
T COG2022 200 AMELGADAVLLNTAIARAKDPVAMARAFAL 229 (262)
T ss_pred HHhcccceeehhhHhhccCChHHHHHHHHH
Confidence 999999999753 3344445444443
No 159
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=91.72 E-value=3.1 Score=32.00 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=59.6
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC----CCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV----MNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~----~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
-|....+.+...|...||..+.. . ..+|+|+++.--.. ....+.++.+++..|..++|+ ++..
T Consensus 8 ~N~~ds~~~~~~l~~~g~~~~~~-----------~-~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvv-gGc~ 74 (414)
T TIGR01579 8 VNQYESESLKNQLIQKGYEVVPD-----------E-DKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIV-TGCY 74 (414)
T ss_pred CCHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEE-ECCc
Confidence 45667788888898889886531 1 35899999853322 236778888888777777664 4443
Q ss_pred CHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 109 SEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
......+++.....|++..+-....+...+..
T Consensus 75 a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~ 106 (414)
T TIGR01579 75 AQSNPKELADLKDVDLVLGNKEKDKINKLLSL 106 (414)
T ss_pred cccCHHHHhcCCCCcEEECCCCHHHHHHHHHH
Confidence 33333344455445566677666666655543
No 160
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=91.66 E-value=4 Score=29.80 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=60.0
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEec------------------------------C-----CCCCCHHHHHHHHHhcCCc
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDK------------------------------E-----MPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~------------------------------~-----~~~~~~~~~~~~l~~~~~~ 98 (145)
=+++.+++++.... .+|+|=.=+ . -....++++++.+.+.. .
T Consensus 118 D~stleEal~a~~~--Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~ 194 (283)
T cd04727 118 GARNLGEALRRISE--GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-R 194 (283)
T ss_pred cCCCHHHHHHHHHC--CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-C
Confidence 46788888888765 367664433 0 01235788889888754 5
Q ss_pred ceEE--EEeCCCCHHHHHHHHHhCCceeecC-----CCCHHHHHHHHHHHHh
Q 048318 99 IKIV--GVTSLNSEAEREAFMQAGLDLCHTK-----PLSVDKILPLMEDLMK 143 (145)
Q Consensus 99 ~~iv--~l~~~~~~~~~~~~~~~g~~~~l~k-----P~~~~~L~~~i~~~~~ 143 (145)
+|+| ..+.-.+++....+++.|++.+++- .-++.+....+...+.
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 7887 6666679999999999999999643 3456666666665554
No 161
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=91.65 E-value=1.9 Score=33.89 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 56 ENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+..+-+..+.. ...|.|.+|...... .-.++++.+++.++++|+|+ ..-.+.+....+.++|+|.+-
T Consensus 224 ~~~~~ra~~Lv~-aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLD-AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHH-hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 344555555555 468999999977533 34678889998888888875 557788899999999998874
No 162
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.62 E-value=1.2 Score=30.55 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=39.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC--eEE-EEcCHHHHHHHHHcCCCccEEEEec
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF--KVE-VAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
.+++++|.|......++..++..++ .+. ...+...+++.+....+||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 3689999999999999999998773 233 3445556666665533599999996
No 163
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.61 E-value=1.2 Score=32.19 Aligned_cols=58 Identities=26% Similarity=0.170 Sum_probs=41.3
Q ss_pred CHHHHHHHHHhcCCcceEEEEeCC------CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 84 NGIEATREIRSMGIKIKIVGVTSL------NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l~~~------~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+.+++++.+|+..+++|+++++-. .-+.....+.++|+++.+.-.+.+++....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 356777777755667888877733 3445688888999999998767677766665544
No 164
>PRK15320 transcriptional activator SprB; Provisional
Probab=91.55 E-value=2 Score=29.88 Aligned_cols=98 Identities=10% Similarity=-0.086 Sum_probs=70.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHHc--CCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKSL--GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~--g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+|.|-+++=...-.++..+++. |..|.++.+....+..++. .||.+++=.--|. .-.-+...++++.++-|++++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~--~p~a~lil~l~p~-eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD--MPDAGLILALNPH-EHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh--CCCceEEEeeCch-hHHHHHHHHHHHcCCCceEEE
Confidence 4678888888888899888875 6778888888888888875 4886665433333 334455667777888899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecC
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
++.--...+.-..-.|+-+|+.|
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH
Confidence 98866655555566677777654
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=91.42 E-value=3.7 Score=28.91 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=41.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EEEEc--CHHHHHHHHHcCCCccEEEEecCCCC
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPV 82 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~~~~--~~~~al~~~~~~~~~dlvl~d~~~~~ 82 (145)
+-++.-+|-+++..+..+..+++.|+. +.... +.-+.+..... ..||+||+|..-+.
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~-~~fDliFIDadK~~ 144 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD-GSFDLVFIDADKAD 144 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC-CCccEEEEeCChhh
Confidence 447899999999999999999998855 44333 44444443212 57999999986543
No 166
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.39 E-value=1.9 Score=34.26 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+-.+.+.+ ...|+|.+|..... ..-++.++.+|+..|+.++| ..+-.+.+....+.++|+|.+.+
T Consensus 250 ~~r~~~l~~-ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVK-AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHH-cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 344444444 46999999985422 23458999999887777665 45667888899999999999853
No 167
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.30 E-value=4.2 Score=29.31 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec-CCCC-CCHHHHHHHHHhcCC-cceEEEEeCCCCH
Q 048318 35 CFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK-EMPV-MNGIEATREIRSMGI-KIKIVGVTSLNSE 110 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~-~~~~-~~~~~~~~~l~~~~~-~~~iv~l~~~~~~ 110 (145)
+...+.+.......|..+. .+.+.+++.+.... .+|+|-+.- ++.. ....+....+....+ ..++|..++-.+.
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~--gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL--GAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc--CCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 4445555555566787755 78899888665543 578776652 1111 122555666655444 3588888888899
Q ss_pred HHHHHHHHhCCceee-----cCCCCHHHHHH
Q 048318 111 AEREAFMQAGLDLCH-----TKPLSVDKILP 136 (145)
Q Consensus 111 ~~~~~~~~~g~~~~l-----~kP~~~~~L~~ 136 (145)
+....+...|++.++ .|+-++.+...
T Consensus 224 ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 224 EDLKRLAKAGADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 999999999999986 44555544443
No 168
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=91.29 E-value=5 Score=32.77 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=73.4
Q ss_pred CceEEEEeC-----cHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHh
Q 048318 25 RLFALVVDD-----DCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~-----~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~ 94 (145)
+.+|+++-- +........+.|...||++.. +.+.+++...... ..++++++--.-.. ..+.++++.+|.
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~-sga~i~viCssD~~Y~~~a~~~~~al~~ 572 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK-AGAQVAVLCSSDKVYAQQGLEVAKALKA 572 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh-cCCCEEEEeCCCcchHHHHHHHHHHHHh
Confidence 445766643 334445666677777888763 4567777777665 45676665443222 246678888888
Q ss_pred cCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 95 MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.... .|++++.... ..++..+|+|+||.--++.-+.+..+.+.+
T Consensus 573 ag~~--~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~~~ 616 (619)
T TIGR00642 573 AGAK--ALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLDIL 616 (619)
T ss_pred CCCC--EEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHHHh
Confidence 7654 4556666544 333788999999988888777776665543
No 169
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.28 E-value=1.3 Score=34.89 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=49.6
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+..+....+.. ...|.|.+|...- ...-.++++.+++.+|+++++ ..+-.+.+....+.++|+|.+-
T Consensus 227 ~~~~~a~~Lv~-aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLE-AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHH-hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEE
Confidence 33444444444 4689999997654 445678899999988887765 4577788889999999999874
No 170
>PRK05670 anthranilate synthase component II; Provisional
Probab=91.10 E-value=1.2 Score=30.23 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=45.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC-CCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~-~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
|||+|........+...|++.|+.+............+.. ..||.+++-=.- ...+.....+.++......|++-++-
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA-LNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-CCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 8999999999999999999999888766543211222233 348988873111 00111112233333223567776654
No 171
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.07 E-value=3.9 Score=28.59 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=47.5
Q ss_pred HHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce--EEEEeCCCCHHHHHHHHHh
Q 048318 43 MALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK--IVGVTSLNSEAEREAFMQA 119 (145)
Q Consensus 43 ~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~--iv~l~~~~~~~~~~~~~~~ 119 (145)
..|...+.- +....+.++++...+.-..--+=++++.+...+.++.++.+++..+.-| +|=...-.+.+....+.++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 344444422 4455566666554432001123344555555567777777776543211 2223333577777777788
Q ss_pred CCceeecCCCCHHHHHH
Q 048318 120 GLDLCHTKPLSVDKILP 136 (145)
Q Consensus 120 g~~~~l~kP~~~~~L~~ 136 (145)
|++.++ -|....++..
T Consensus 88 GA~Fiv-sP~~~~~v~~ 103 (213)
T PRK06552 88 GAQFIV-SPSFNRETAK 103 (213)
T ss_pred CCCEEE-CCCCCHHHHH
Confidence 876665 4544444443
No 172
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.69 E-value=4.2 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
..+..+.++.+++.++++. |=...-.+.+....+.++|++.++
T Consensus 43 t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 43 TPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred CccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEE
Confidence 3445666666665554421 222333456666666666665554
No 173
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=90.68 E-value=10 Score=33.60 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=67.1
Q ss_pred ceEEEE----eCcHHHHHHHHHHHHHcCCeEEEEc---CHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhcC
Q 048318 26 LFALVV----DDDCFIRTIHSMALKSLGFKVEVAE---NGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSMG 96 (145)
Q Consensus 26 ~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~~ 96 (145)
-+|++. |-|..=...+.-+|+..||+|...- ..++.++.+.+ ..||+|.+..-+.. + ...++++.+++.+
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e-~~~diVgLS~L~t~s~~~m~~~i~~L~~~g 830 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE-ENADIIGLSGLITPSLDEMVHVAKEMERQG 830 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-hCCCEEEEcCcchhhHHHHHHHHHHHHhcC
Confidence 456666 5555556677777888999988432 56777887777 67999999876643 2 3467888998888
Q ss_pred CcceEEEEeCCCCHHHHHHH---HHhCCceee
Q 048318 97 IKIKIVGVTSLNSEAEREAF---MQAGLDLCH 125 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~---~~~g~~~~l 125 (145)
+.+||++=++..+......- .-.|++.|-
T Consensus 831 ~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~ 862 (1229)
T PRK09490 831 FTIPLLIGGATTSKAHTAVKIAPNYSGPVVYV 862 (1229)
T ss_pred CCCeEEEEeeccchhhhhhhhhhcccCCcEEe
Confidence 88888766655554432111 112888774
No 174
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.57 E-value=2 Score=33.54 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+.+...+. ...|+|.+|..... ....+.++.+++.++++|+++ ..-.+.+....+.++|+|.+-
T Consensus 227 ~r~~~L~~--aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVK--AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHH--hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 34443443 35899999986543 346778889988878888875 677788889999999999883
No 175
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=90.52 E-value=2.5 Score=29.03 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=49.7
Q ss_pred CCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 49 GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 49 g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
++.|....+.+++.+.... ..|+|-+|...-. .+-.++++.+++.+ .+++++-++.++...+.+.|+|-+
T Consensus 45 ~~~V~ITPT~~ev~~l~~a--GadIIAlDaT~R~Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA--GADIIALDATDRPRPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDII 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC--T-SEEEEE-SSSS-SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEE
T ss_pred CCCeEECCCHHHHHHHHHc--CCCEEEEecCCCCCCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEE
Confidence 4678888899999888875 4899999986622 55678889998865 456788889999999999998754
No 176
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.46 E-value=4.4 Score=28.15 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=29.7
Q ss_pred EEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHH
Q 048318 75 FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135 (145)
Q Consensus 75 l~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~ 135 (145)
++.+.+...++.+.++.+++.++..-+|=...-.+.+....+..+|++..+. |....++.
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs-p~~~~~v~ 97 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT-PNTDPEVI 97 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC-CCCCHHHH
Confidence 3444444445666666666544321122223334556666677777755544 43333333
No 177
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=90.46 E-value=2.7 Score=30.81 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=62.4
Q ss_pred eEEEEeCcHHHHH---HHHHHHH----HcC-Ce-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC
Q 048318 27 FALVVDDDCFIRT---IHSMALK----SLG-FK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97 (145)
Q Consensus 27 ~iLii~~~~~~~~---~l~~~L~----~~g-~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~ 97 (145)
.|||-|+|-...- .+...++ ..+ .. .+.+.+.+++.+.+.. .+|+|++| +|+..+-.+..+.+++..+
T Consensus 159 ~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a--gaDiI~LD-n~~~e~l~~av~~~~~~~~ 235 (284)
T PRK06096 159 TILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA--QPDVLQLD-KFSPQQATEIAQIAPSLAP 235 (284)
T ss_pred hhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHhhccCC
Confidence 3566666654432 2333332 222 22 3478899999999875 48999998 5554444455555554444
Q ss_pred cceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 98 KIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+ .+-.++.-+.+.+.+....|+|-+..
T Consensus 236 ~~-~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 236 HC-TLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred Ce-EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 44 45678888999999999999988753
No 178
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.06 E-value=2.5 Score=31.94 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 58 GKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..+-.+.+.+ ...|++++|..... ..-.+.++.+++..|+++|| ..+-.+.+....++++|+|.+.+
T Consensus 109 ~~er~~~L~~-agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 109 DFERAEALVE-AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp HHHHHHHHHH-TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHH-cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEE
Confidence 3444555555 46899999976543 34567889999988888886 57777889999999999998864
No 179
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=90.06 E-value=4.3 Score=29.46 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=58.8
Q ss_pred eEEEEeCcHHHHHHHHHH---HHH-cC--CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMA---LKS-LG--FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~---L~~-~g--~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.||+-++|-...-.+... +++ .+ ..+ ..+.+.+++.+.+.. .+|.|.+|--.+ ..--+..+.++.. +++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~--gaD~I~ld~~~~-e~l~~~v~~i~~~-~~i 228 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA--GADIIMLDNMSP-EELKEAVKLLKGL-PRV 228 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc--CCCEEEECCCCH-HHHHHHHHHhccC-CCe
Confidence 577777775554333322 222 33 233 478899999988764 589999985433 1112233334333 466
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
|++ .++.-+.+........|+|.+-
T Consensus 229 ~i~-asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 229 LLE-ASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred EEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 655 5666778888899999999884
No 180
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.00 E-value=3.4 Score=30.80 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 60 EAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 60 ~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..+.+.+ ..+|+|.+|...... ...+.++.+++..|.+++++ ..-.+......+.++|+|.+..
T Consensus 97 ~~~~~l~e-agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 97 ERAEALVE-AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 33444444 468999999755322 34678888888776677664 5667788889999999998864
No 181
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.91 E-value=3.7 Score=32.22 Aligned_cols=98 Identities=8% Similarity=0.071 Sum_probs=59.5
Q ss_pred EeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC----CHHHHH---HHHHhcCCcceEEE
Q 048318 31 VDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM----NGIEAT---REIRSMGIKIKIVG 103 (145)
Q Consensus 31 i~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~----~~~~~~---~~l~~~~~~~~iv~ 103 (145)
+--|....+.+...|...||.++. .. ...|+|+++.--... .....+ +.+++..|..+||+
T Consensus 33 C~~N~~dse~~~~~l~~~G~~~~~-----------~~-~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv 100 (467)
T PRK14329 33 CQMNFADSEIVASILQMAGYNTTE-----------NL-EEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIVGV 100 (467)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECC-----------Cc-ccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 356778889999999999998764 12 347999998633221 223334 44455667766665
Q ss_pred EeCCCCHHHHHHHHHh-CCceeecCCCCHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQA-GLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~-g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.+...+ ..-...+.. +.-|+++.+-....+...+..+
T Consensus 101 gGc~a~-~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~ 138 (467)
T PRK14329 101 LGCMAE-RLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEV 138 (467)
T ss_pred ECChhc-CcHHHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 443333 223333443 4357777787777777766654
No 182
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=89.84 E-value=4.5 Score=27.27 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEcCHHHHHHHHHcCCCccEEEEecCCCCC-------CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM-------NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 52 v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-------~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
-..+.+.+++.+.... .+|.+++..-.+.. -|++.++.+.+.. .+|++++.+-. .+....+.+.|++++
T Consensus 99 g~S~h~~~e~~~a~~~--g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-~~pv~AlGGI~-~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 99 GASCHSLEEAREAEEL--GADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-PIPVYALGGIT-PENIPELREAGADGV 174 (180)
T ss_dssp EEEESSHHHHHHHHHC--TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEE
T ss_pred EeecCcHHHHHHhhhc--CCCEEEECCccCCCCCccccccCHHHHHHHHHhC-CCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 3478899986665543 58999999865543 3888888887654 48999887764 444667889999887
Q ss_pred e
Q 048318 125 H 125 (145)
Q Consensus 125 l 125 (145)
-
T Consensus 175 A 175 (180)
T PF02581_consen 175 A 175 (180)
T ss_dssp E
T ss_pred E
Confidence 3
No 183
>CHL00101 trpG anthranilate synthase component 2
Probab=89.70 E-value=1.7 Score=29.66 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=36.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
||++|........+.+.|+..|+.+..+......+..+.. ..||.|++.-
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiiisg 51 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN-LNIRHIIISP 51 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh-CCCCEEEECC
Confidence 8999999999999999999999888876644322222333 3589888753
No 184
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.69 E-value=2.8 Score=29.83 Aligned_cols=56 Identities=25% Similarity=0.184 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCC------HHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNS------EAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~------~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
++++++.+|+.. .+|+++++-... +.....+.++|+++++.-...++++...+..+
T Consensus 64 ~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 456666666543 567666555332 55677788888888877544555555554443
No 185
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=89.16 E-value=2.9 Score=29.46 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCeEE-EEc--CHHHHHHHHHcCCCccEEEEecCCCC-CCH-HHHHHHHHhcCCcceEEEEeCCCCHHH
Q 048318 38 RTIHSMALKSLGFKVE-VAE--NGKEAVDLFRSGAKFDIVFIDKEMPV-MNG-IEATREIRSMGIKIKIVGVTSLNSEAE 112 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~-~~~--~~~~al~~~~~~~~~dlvl~d~~~~~-~~~-~~~~~~l~~~~~~~~iv~l~~~~~~~~ 112 (145)
...+..+|+..||++. ..+ ..++.++...+ .+||+|-...-|.. +.+ -++++++++....-|+++.......+
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e-~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvt- 198 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE-LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVT- 198 (227)
T ss_pred HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH-cCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCcccc-
Confidence 3566677788899987 333 56778888877 67999999887753 333 46788888877666777664443221
Q ss_pred HHHHHHhCCceee
Q 048318 113 REAFMQAGLDLCH 125 (145)
Q Consensus 113 ~~~~~~~g~~~~l 125 (145)
..-+-+-|+|.|-
T Consensus 199 q~~a~~iGAD~~~ 211 (227)
T COG5012 199 QDWADKIGADAYA 211 (227)
T ss_pred HHHHHHhCCCccC
Confidence 1234567999884
No 186
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.14 E-value=3.3 Score=32.66 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+..+.+.+ ...|++.+|..... ..-.+.++.+++..+++|+++ ..-.+.+....+.++|++.+-
T Consensus 230 ~e~a~~L~~-agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVE-AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHH-hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 344444444 46899999975332 345678888888777888774 788899999999999999884
No 187
>PRK04148 hypothetical protein; Provisional
Probab=88.68 E-value=1.2 Score=28.87 Aligned_cols=98 Identities=18% Similarity=0.087 Sum_probs=58.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+++.++-- ....+...|.+.|++|+...-.+++++.+.. ...+++.-|+.-|+.+-.+-...+.+..|.
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysirpp------ 87 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIRPP------ 87 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeCCC------
Confidence 4568888777 3334555667789999988888888887776 457889988877764433222222221111
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHH
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDK 133 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 133 (145)
..-......-|.+.|++-+ .+|++-+.
T Consensus 88 -~el~~~~~~la~~~~~~~~-i~~l~~e~ 114 (134)
T PRK04148 88 -RDLQPFILELAKKINVPLI-IKPLSGEE 114 (134)
T ss_pred -HHHHHHHHHHHHHcCCCEE-EEcCCCCC
Confidence 1112333444556677655 46776554
No 188
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=88.48 E-value=6 Score=29.00 Aligned_cols=76 Identities=21% Similarity=0.164 Sum_probs=53.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcC--C---eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLG--F---KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g--~---~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~ 93 (145)
-.+|.++|=|+...+..++.|-... . .+. ...|+.+.++.... .+|+||+|..-|.+. ..++.+..+
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fDvIi~D~tdp~gp~~~Lft~eFy~~~~ 177 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFDVIIVDSTDPVGPAEALFTEEFYEGCR 177 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCCEEEEcCCCCCCcccccCCHHHHHHHH
Confidence 4578999999999999999986432 2 233 56677777765543 699999999888543 467888887
Q ss_pred hcCCcceEE
Q 048318 94 SMGIKIKIV 102 (145)
Q Consensus 94 ~~~~~~~iv 102 (145)
+....--|+
T Consensus 178 ~~L~~~Gi~ 186 (282)
T COG0421 178 RALKEDGIF 186 (282)
T ss_pred HhcCCCcEE
Confidence 754333333
No 189
>PRK04302 triosephosphate isomerase; Provisional
Probab=88.47 E-value=6.7 Score=27.46 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=56.0
Q ss_pred HHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecC--CCC--------C-CHHHHHHHHHhcCCcceEEEEeCCCCHH
Q 048318 44 ALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKE--MPV--------M-NGIEATREIRSMGIKIKIVGVTSLNSEA 111 (145)
Q Consensus 44 ~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~--~~~--------~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~ 111 (145)
.....|..+. ++.+.+++.. +.. ..+|+|-+.-. ... . ...++++.+++...++|++.=.+-.+.+
T Consensus 109 ~a~~~Gl~~I~~v~~~~~~~~-~~~-~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e 186 (223)
T PRK04302 109 RAKKLGLESVVCVNNPETSAA-AAA-LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGE 186 (223)
T ss_pred HHHHCCCeEEEEcCCHHHHHH-Hhc-CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHH
Confidence 3345687755 5666565554 444 45787765421 110 0 1234556677654568888766667888
Q ss_pred HHHHHHHhCCceeec-----CCCCHHHHHHHH
Q 048318 112 EREAFMQAGLDLCHT-----KPLSVDKILPLM 138 (145)
Q Consensus 112 ~~~~~~~~g~~~~l~-----kP~~~~~L~~~i 138 (145)
....+...|+|+++. |.-++......+
T Consensus 187 ~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 187 DVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred HHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 888888999999974 444554444433
No 190
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=88.41 E-value=6 Score=26.85 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=46.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcC--CeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLG--FKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPV 82 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~ 82 (145)
++.++.+++.+.+.++..++.+| |.+....+.+++++.... +..|.+..-+....+
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD 91 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc
Confidence 46899999999999999999886 888899999999998853 345888888887655
No 191
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=88.39 E-value=8.6 Score=28.58 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=60.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+.+++++.+. ...++..++..|.. +......++....+.. .|++++- +..+.-+.-+++.+.. .+|+|
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~---adi~v~p-S~~Eg~~~~~lEAma~---G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA---LDLFVLP-SLAEGISNTILEAMAS---GLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh---cCEEEec-cccccCchHHHHHHHc---CCCEE
Confidence 345666665543 34566666655533 3222223333333332 5766542 2223345556666553 56776
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+ ++... ..+....|..+++..|-+.+++...+.++++
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5 43332 2334556788899999999999999988764
No 192
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.30 E-value=8.2 Score=28.28 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=58.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cC--CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LG--FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g--~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.|||-|+|-...-.+...++. .+ ..+ +.+.+.+|+.+.+.. .+|+|++|= | +--++-+.+.......
T Consensus 166 ~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~--gaDiI~LDn-~---s~e~l~~av~~~~~~~ 239 (281)
T PRK06106 166 AVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL--GVDAVLLDN-M---TPDTLREAVAIVAGRA 239 (281)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc--CCCEEEeCC-C---CHHHHHHHHHHhCCCc
Confidence 466666665554444444432 23 223 488899999999865 589999983 3 3333333333222233
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+ +..++.-+.+.+.+....|+|.+-
T Consensus 240 ~-leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 240 I-TEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred e-EEEECCCCHHHHHHHHhcCCCEEE
Confidence 3 567888899999999999998774
No 193
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=88.30 E-value=3.7 Score=26.75 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=42.5
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc----CHHHHHHHHHcCCCccEEEEecCCCC
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE----NGKEAVDLFRSGAKFDIVFIDKEMPV 82 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~----~~~~al~~~~~~~~~dlvl~d~~~~~ 82 (145)
-.+.+|+++.......+-+..+|.+.|..+..+. +.+++ ++ .-|+|+.-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~---~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH---DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh---hCCEEEEecCCCC
Confidence 3467899999999999999999999999999776 44433 32 3699999876553
No 194
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.07 E-value=7.6 Score=27.59 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 60 EAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 60 ~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+..+.+.+ ...|.+-+|...++. ..++.++++++....+|||.-.+-.+.+...+.+..|++.+.
T Consensus 152 ~~a~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 152 IDALNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HHHHHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 34444555 568999998655554 358899999886545899988888899999999999999874
No 195
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=87.98 E-value=1.5 Score=31.89 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=37.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-------CHHHHHHHHHcCCCccEEEEecCC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAE-------NGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
|+|||++.+......+...|...|+++.... +.++..+.+.. ..||+||-=..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~-~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA-FKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH-H--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH-hCCCeEecccee
Confidence 6899999999999999999998888877542 45555556655 569988765543
No 196
>PRK00811 spermidine synthase; Provisional
Probab=87.83 E-value=8.7 Score=28.01 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=45.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcC------CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLG------FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIR 93 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g------~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~ 93 (145)
.+|.++|-++...+..+..+...+ -.+. ...++.+.+.. .. ..||+|++|...|... ..++++.++
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TE-NSFDVIIVDSTDPVGPAEGLFTKEFYENCK 178 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CC-CcccEEEECCCCCCCchhhhhHHHHHHHHH
Confidence 478999999999999999886431 2343 55677665544 22 4699999998655432 245666666
Q ss_pred hc
Q 048318 94 SM 95 (145)
Q Consensus 94 ~~ 95 (145)
+.
T Consensus 179 ~~ 180 (283)
T PRK00811 179 RA 180 (283)
T ss_pred Hh
Confidence 53
No 197
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=87.82 E-value=4.1 Score=27.43 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=50.2
Q ss_pred CccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 70 KFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 70 ~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.+|.+++..+.-. .+-.+.++.+++..|..+.| ...-.+.++..++++.|+|.+..-.++++++...++.+.
T Consensus 49 l~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I-~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 49 LSDMILIKDNHIAFFGGIEEAVKAARQAAPEKKKI-EVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp TTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEE-EEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred CCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCceE-EEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 4676776654322 34567888888877766432 334456788999999999999999999999999888654
No 198
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=87.82 E-value=1.4 Score=30.09 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec--CCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK--EMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~--~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++||++|........+...|+..|+.+......+.-...+ ..+|.|++-= ..++. -..+.+.++......|++-
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l---~~~d~iIi~gGp~~~~~-~~~~~~~i~~~~~~~PiLG 77 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV---ENFSHILISPGPDVPRA-YPQLFAMLERYHQHKSILG 77 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHh---ccCCEEEECCCCCChHH-hhHHHHHHHHhcCCCCEEE
Confidence 5799999999999999999999998877665322112222 2378766432 11111 1123344443223567766
Q ss_pred EeC
Q 048318 104 VTS 106 (145)
Q Consensus 104 l~~ 106 (145)
++-
T Consensus 78 ICl 80 (190)
T PRK06895 78 VCL 80 (190)
T ss_pred EcH
Confidence 554
No 199
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=87.59 E-value=8.7 Score=27.76 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=65.2
Q ss_pred HHHHHHcCCeEEEEc--CHHHHHHHHHcCCCccEEEEecCCCCC-----CHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 42 SMALKSLGFKVEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPVM-----NGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 42 ~~~L~~~g~~v~~~~--~~~~al~~~~~~~~~dlvl~d~~~~~~-----~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
.+.|-+.||.|.... |.--|.++. + .... .++-+.-|=+ .....++.|++. +++|+++=++-...+...
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLe-d-~Gc~-aVMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLE-D-IGCA-TVMPLGSPIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHH-H-cCCe-EEeeccCcccCCCCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHH
Confidence 334557899998433 343344433 3 3333 3444544432 234677888875 468999888889999999
Q ss_pred HHHHhCCceee-----cCCCCHHHHHHHHHHHHh
Q 048318 115 AFMQAGLDLCH-----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 115 ~~~~~g~~~~l-----~kP~~~~~L~~~i~~~~~ 143 (145)
.+++.|+|+.+ .|--++.++...++...+
T Consensus 206 ~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 206 QAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 99999999985 466777888877766543
No 200
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=87.53 E-value=5.1 Score=31.77 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=43.0
Q ss_pred CCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 69 AKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 69 ~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
...|+|.+|..... ...++.++.+++..++++|++ ..-.+.+....+.++|+|.+.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 46899999985332 234688999998877777764 566788889999999999884
No 201
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.49 E-value=8.3 Score=27.43 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=58.4
Q ss_pred ceEEEEeCc----HHHHHHHHHHHHHcCCeEEEE-c--CHHHHHHHHHcCCCccEEEEecCCCC------CCHHHHHHHH
Q 048318 26 LFALVVDDD----CFIRTIHSMALKSLGFKVEVA-E--NGKEAVDLFRSGAKFDIVFIDKEMPV------MNGIEATREI 92 (145)
Q Consensus 26 ~~iLii~~~----~~~~~~l~~~L~~~g~~v~~~-~--~~~~al~~~~~~~~~dlvl~d~~~~~------~~~~~~~~~l 92 (145)
...+++.+- ......+.+.+++.|..+..+ + +..+.++.+.. ....++++.. .|+ .+..+.++++
T Consensus 102 adgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-~~~~~l~msv-~~~~g~~~~~~~~~~i~~l 179 (244)
T PRK13125 102 ADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-LSPLFIYYGL-RPATGVPLPVSVERNIKRV 179 (244)
T ss_pred CCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-hCCCEEEEEe-CCCCCCCchHHHHHHHHHH
Confidence 344555442 234556667778888775532 2 22444554444 3456776643 232 1224566777
Q ss_pred HhcCCcceEEEEeCCC-CHHHHHHHHHhCCceeecC
Q 048318 93 RSMGIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 93 ~~~~~~~~iv~l~~~~-~~~~~~~~~~~g~~~~l~k 127 (145)
|+..+..|++ +...- +.+....+...|+|.++.-
T Consensus 180 r~~~~~~~i~-v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 180 RNLVGNKYLV-VGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred HHhcCCCCEE-EeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 7655455654 55554 7788888889999999865
No 202
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=87.32 E-value=7.1 Score=26.47 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=48.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc--CCeEEEEc------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL--GFKVEVAE------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~--g~~v~~~~------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
.+.+|.++...+...+.+.+.|+.. |..+.-.. +.++.++.+.. ..||++++.+..|.+.. ++...+..
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~-s~~dil~VglG~PkQE~--~~~~~~~~ 123 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR-SGAGIVFVGLGCPKQEI--WMRNHRHL 123 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH-cCCCEEEEEcCCcHhHH--HHHHhHHh
Confidence 3468999999999999999998764 45544221 22334666766 67999999998886554 34555544
Q ss_pred C
Q 048318 96 G 96 (145)
Q Consensus 96 ~ 96 (145)
.
T Consensus 124 ~ 124 (177)
T TIGR00696 124 K 124 (177)
T ss_pred C
Confidence 3
No 203
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.31 E-value=7.8 Score=26.92 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=10.9
Q ss_pred EEeCcHHHHHHHHHHHHHcCCeE
Q 048318 30 VVDDDCFIRTIHSMALKSLGFKV 52 (145)
Q Consensus 30 ii~~~~~~~~~l~~~L~~~g~~v 52 (145)
+-.++++....+...|-+.|+.+
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~ 32 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPA 32 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCE
Confidence 33444444444555554555443
No 204
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=87.19 E-value=6.9 Score=26.18 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=47.2
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC--------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV--------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~--------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+..++.+.... .+|.++++...|. ..+.+.++.+++. .++|+++.++- +.+....+...|++.+.
T Consensus 101 ~~~t~~~~~~~~~~--g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL--GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34566666665543 5899998754432 3456788888764 46888876655 56778889999999875
Q ss_pred c
Q 048318 126 T 126 (145)
Q Consensus 126 ~ 126 (145)
.
T Consensus 177 ~ 177 (196)
T cd00564 177 V 177 (196)
T ss_pred E
Confidence 3
No 205
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=87.02 E-value=16 Score=30.26 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhc--CCcceEEEEeCCCC
Q 048318 39 TIHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSM--GIKIKIVGVTSLNS 109 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~--~~~~~iv~l~~~~~ 109 (145)
......|++.||.+.. +.++...+..+.. .+||.|=+|-.+-. .....+++.+... ..++.+| ...-.+
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~ 758 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVS-LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVET 758 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhh-CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 3344467888999764 5577777777776 67999999975421 2234456655432 2345554 566678
Q ss_pred HHHHHHHHHhCCce----eecCCCCHHHHHHHHHHH
Q 048318 110 EAEREAFMQAGLDL----CHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 110 ~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i~~~ 141 (145)
.+....+.+.|++. |+.||...+++...++..
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 88888888999863 478999999998877653
No 206
>PRK13566 anthranilate synthase; Provisional
Probab=87.02 E-value=4.3 Score=33.76 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=50.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC--C-CCCHHHHHHHHHhcCCcce
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM--P-VMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~--~-~~~~~~~~~~l~~~~~~~~ 100 (145)
.+++|++||........+.+.|+..|+.+..+..... .+.+.. ..||.||+--.- + +....++++...+ ...|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~-~~~DgVVLsgGpgsp~d~~~~~lI~~a~~--~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR-VNPDLVVLSPGPGRPSDFDCKATIDAALA--RNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh-cCCCEEEECCCCCChhhCCcHHHHHHHHH--CCCc
Confidence 4568999999988999999999999999886654422 122333 458998874221 1 1123344444333 2577
Q ss_pred EEEEeC
Q 048318 101 IVGVTS 106 (145)
Q Consensus 101 iv~l~~ 106 (145)
|+-++-
T Consensus 601 ILGICl 606 (720)
T PRK13566 601 IFGVCL 606 (720)
T ss_pred EEEEeh
Confidence 776654
No 207
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=86.96 E-value=7.2 Score=26.15 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=49.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CCeEEEEc-------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GFKVEVAE-------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~~v~~~~-------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+.+|.++...+...+.+...|+.. |..++-+. +.++.++.+.. ..||+|++.+..|.+. .++...+..
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~-~~pdiv~vglG~PkQE--~~~~~~~~~ 124 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA-SGPDIVFVGLGAPKQE--RWIARHRQR 124 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEECCCCHHH--HHHHHHHHH
Confidence 468899999999999888888765 55555222 34455666666 6799999999877533 456666665
Q ss_pred CCc
Q 048318 96 GIK 98 (145)
Q Consensus 96 ~~~ 98 (145)
.+.
T Consensus 125 l~~ 127 (172)
T PF03808_consen 125 LPA 127 (172)
T ss_pred CCC
Confidence 433
No 208
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=86.88 E-value=5.6 Score=29.03 Aligned_cols=70 Identities=23% Similarity=0.224 Sum_probs=54.2
Q ss_pred ccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.|.+++-.+.-.. +--+.+++.|+..++.+.| =..-++.++..+|+.+|+|-++.-.++++++...++.+
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~~~~~kI-EVEvesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKI-EVEVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhCCCCceE-EEEcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 6778877655432 3456788888877776644 34556788899999999999999999999999998873
No 209
>PLN02591 tryptophan synthase
Probab=86.85 E-value=4.5 Score=29.07 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCcceEEEEeCCCCHHH------HHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 84 NGIEATREIRSMGIKIKIVGVTSLNSEAE------REAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l~~~~~~~~------~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
+.+++++.+| ....+|+++++-...--. ..++.++|+++++.-.+.+++......++-+.+
T Consensus 65 ~~~~~~~~~r-~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~g 131 (250)
T PLN02591 65 SVISMLKEVA-PQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNG 131 (250)
T ss_pred HHHHHHHHHh-cCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcC
No 210
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=86.83 E-value=7.4 Score=33.30 Aligned_cols=80 Identities=19% Similarity=0.104 Sum_probs=48.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEEEEcCHHHHHHHHH----cCCCccEEEEecCCCCC--C-HH-HHHHHHHhc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVEVAENGKEAVDLFR----SGAKFDIVFIDKEMPVM--N-GI-EATREIRSM 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~~~----~~~~~dlvl~d~~~~~~--~-~~-~~~~~l~~~ 95 (145)
-++||+||+...+...|..+|+.. |..+.++.+.+-.++.+. ....||.|++.-.-..- . .. ...+.+.+.
T Consensus 81 ~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~ 160 (918)
T PLN02889 81 FVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC 160 (918)
T ss_pred cceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh
Confidence 478999999999999999999987 877665443321122221 11368999987543211 1 11 123444432
Q ss_pred CCcceEEEEe
Q 048318 96 GIKIKIVGVT 105 (145)
Q Consensus 96 ~~~~~iv~l~ 105 (145)
..+||+=++
T Consensus 161 -~~iPILGIC 169 (918)
T PLN02889 161 -RDIPILGVC 169 (918)
T ss_pred -CCCcEEEEc
Confidence 347776654
No 211
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=86.80 E-value=2.7 Score=33.60 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=38.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCH---HHHHHHHHcCCCccEEEEecC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENG---KEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~al~~~~~~~~~dlvl~d~~ 79 (145)
++||+||....+...+...|+..|+.+..+.+. ...++.+.. ..|+.|++.-.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~-~~~~~IIlSpG 57 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT-MSNPVLMLSPG 57 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh-cCcCEEEEcCC
Confidence 479999999999999999999999887765542 222344443 45788888653
No 212
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=86.79 E-value=11 Score=27.93 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=59.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHH----cC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDCFIRTIHSMALKS----LG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~----~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.|||-|+|-...-.+...++. .. ...+.+.+.+|+.+.+.. .+|+|++|= |+..+--+.++.+ ..++
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~--gaDiI~LDn-~s~e~~~~av~~~---~~~~- 253 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA--GADIIMLDN-FTTEQMREAVKRT---NGRA- 253 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc--CCCEEEeCC-CChHHHHHHHHhh---cCCe-
Confidence 467777775555445554432 22 223488899999999875 489999993 3322223333332 2233
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..++.-+.+.+.+....|+|.+-.
T Consensus 254 ~ieaSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 254 LLEVSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 45567778889999999999988754
No 213
>PLN02366 spermidine synthase
Probab=86.74 E-value=11 Score=27.99 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=46.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc-----CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHHh
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL-----GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~-----g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~~ 94 (145)
.+|.++|-|+...+..+..+... +-.+. ...|+.+.++.... ..||+|++|..-|... ..++++.+++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~-~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE-GTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC-CCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 46889999999888888887542 12344 45566666654423 4699999998665433 2356777765
Q ss_pred c
Q 048318 95 M 95 (145)
Q Consensus 95 ~ 95 (145)
.
T Consensus 195 ~ 195 (308)
T PLN02366 195 A 195 (308)
T ss_pred h
Confidence 4
No 214
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=86.73 E-value=6.1 Score=27.28 Aligned_cols=89 Identities=19% Similarity=0.365 Sum_probs=56.6
Q ss_pred HHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhc--CCcceEEEEeCCCCHH
Q 048318 41 HSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSM--GIKIKIVGVTSLNSEA 111 (145)
Q Consensus 41 l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~--~~~~~iv~l~~~~~~~ 111 (145)
....++..||.+.. +......++.+.. ..||.|=+|..+.. .....+++.+... ..++++| .++-.+..
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~~ 214 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKR-LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETEE 214 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCHH
Confidence 44456778988775 4456666667766 57999999965432 2234555555432 2345554 57778888
Q ss_pred HHHHHHHhCCce----eecCCCCH
Q 048318 112 EREAFMQAGLDL----CHTKPLSV 131 (145)
Q Consensus 112 ~~~~~~~~g~~~----~l~kP~~~ 131 (145)
....+...|++. |+.+|...
T Consensus 215 ~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 215 QLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHcCCCeeeeceeccCCCC
Confidence 888889999843 35567654
No 215
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=86.32 E-value=7 Score=30.36 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC-CCC---CHHHHH---HHHHhcCCcceEEEEe
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVM---NGIEAT---REIRSMGIKIKIVGVT 105 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~-~~~---~~~~~~---~~l~~~~~~~~iv~l~ 105 (145)
-|....+.+...|...||..+.- . ...|+++++.-- ... ...+.+ +.+++..|.++|++.+
T Consensus 12 ~N~~ds~~~~~~l~~~G~~~~~~-----------~-~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~G 79 (437)
T PRK14331 12 MNFNDSEKIKGILQTLGYEPADD-----------W-EEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCG 79 (437)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 46667788888888889876641 1 247999998522 222 233344 4455566777666544
Q ss_pred CCCCHHHHHHHH-HhCCceeecCCCCHHHHHHHHHHH
Q 048318 106 SLNSEAEREAFM-QAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 106 ~~~~~~~~~~~~-~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
...+. .-.+.+ ....-|++..+-....+...+...
T Consensus 80 c~a~~-~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~ 115 (437)
T PRK14331 80 CLAQR-AGYEIVQKAPFIDIVFGTFNIHHLPELLEQA 115 (437)
T ss_pred chhcC-ChHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 32221 111222 222335556676666666555543
No 216
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=86.00 E-value=9.2 Score=26.41 Aligned_cols=90 Identities=16% Similarity=0.327 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhc--CCcceEEEEeCCCCH
Q 048318 40 IHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSM--GIKIKIVGVTSLNSE 110 (145)
Q Consensus 40 ~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~--~~~~~iv~l~~~~~~ 110 (145)
.....|+..|+.+.. +..+...+..+.. .+||.|=+|..+.. .....+++.+... ...+++| ..+-.+.
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~-l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 214 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR-LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVETP 214 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh-CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCCH
Confidence 444566788988764 4455555666666 57999999975432 1233455555442 2244544 5666788
Q ss_pred HHHHHHHHhCCce----eecCCCCH
Q 048318 111 AEREAFMQAGLDL----CHTKPLSV 131 (145)
Q Consensus 111 ~~~~~~~~~g~~~----~l~kP~~~ 131 (145)
.....+...|++. |+.||...
T Consensus 215 ~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 215 EQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHcCCCEEeeceeccCCCC
Confidence 8888888888853 35667654
No 217
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=85.77 E-value=11 Score=27.07 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=41.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc----CCCccEEEEecC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS----GAKFDIVFIDKE 79 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~----~~~~dlvl~d~~ 79 (145)
-++.-+|-++......+..++..|+. +. ...+..+.+..+.. ...||+||+|.+
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 46899999999999999999988843 44 55677777766542 137999999986
No 218
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=85.75 E-value=9.1 Score=26.43 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=33.8
Q ss_pred HHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 61 AVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 61 al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
|.+.+.+ ..||+|++|--.. =.+--++...++.++++.-+|+..........
T Consensus 114 a~~~l~~-~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~li 170 (198)
T COG2109 114 AKEALAD-GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELI 170 (198)
T ss_pred HHHHHhC-CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 3344445 4799999995322 24677888888888878888755544444443
No 219
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.70 E-value=4.9 Score=29.08 Aligned_cols=56 Identities=20% Similarity=0.068 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhcCCcceEEEEeCC------CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 84 NGIEATREIRSMGIKIKIVGVTSL------NSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l~~~------~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
+.+++++.+|+. +.+|+++++-. .-+....++.++|+++++..-+.+++.......
T Consensus 78 ~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~ 139 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISV 139 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 346667777643 56787766654 234557788888888888775555655544443
No 220
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=85.58 E-value=2.4 Score=28.83 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred HcCCeEEEE------cCHHHHHHHHHcCCCccEEEEecCCC-CC-----CHHHHHHHHHhcCCcceEEEEeCC
Q 048318 47 SLGFKVEVA------ENGKEAVDLFRSGAKFDIVFIDKEMP-VM-----NGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 47 ~~g~~v~~~------~~~~~al~~~~~~~~~dlvl~d~~~~-~~-----~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
..|+++... .-..+..+.+.+ .+.|++++|+... +. ....+++.+|+.+|.+||++++..
T Consensus 31 ~l~~~~iNLGfsG~~~le~~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 31 RLGLDVINLGFSGNGKLEPEVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPI 102 (178)
T ss_dssp HHT-EEEEEE-TCCCS--HHHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE--
T ss_pred HcCCCeEeeeecCccccCHHHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 447776632 223344556666 5689999997431 21 234688999999999999998743
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=85.58 E-value=13 Score=27.92 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=53.8
Q ss_pred CceEEEEeCcH---HHHHHHHHHHHHcCCeEEEEcC---H----HHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDC---FIRTIHSMALKSLGFKVEVAEN---G----KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~---~~~~~l~~~L~~~g~~v~~~~~---~----~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
+.+|+++..|. ...+.++......|..+..... . .++++.... ..+|+||+|..=-.....+++..++.
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~-~~~DvVLIDTaGr~~~~~~lm~eL~~ 246 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA-RGIDVVLIDTAGRMHTDANLMDELKK 246 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh-CCCCEEEEECCCccCCcHHHHHHHHH
Confidence 45788887773 4445666666667766553322 1 244444444 46899999974211123334444332
Q ss_pred ----cCCcceEEEEeCCCCHHHHHHHH----HhCCceeec
Q 048318 95 ----MGIKIKIVGVTSLNSEAEREAFM----QAGLDLCHT 126 (145)
Q Consensus 95 ----~~~~~~iv~l~~~~~~~~~~~~~----~~g~~~~l~ 126 (145)
..|+..++++.+....+....+. ..+.+.++.
T Consensus 247 i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 247 IVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 35665566665554433332222 246777754
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.42 E-value=16 Score=28.54 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=54.9
Q ss_pred CceEEEEeCcHHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHH---HcCCCccEEEEecCCCCCCHHHHHHHH----Hh
Q 048318 25 RLFALVVDDDCFI---RTIHSMALKSLGFKVEVAENGKEAVDLF---RSGAKFDIVFIDKEMPVMNGIEATREI----RS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~---~~~~~~dlvl~d~~~~~~~~~~~~~~l----~~ 94 (145)
+.+|.+++-|+.. .+.++..-+..|+.+..+.+..+..+.+ .....+|+||+|.-=-.....+.+..+ +.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 4578888887653 4455555556788877777666655444 321258999999732212222333333 33
Q ss_pred cCCcceEEEEeCCCCHHHHH----HHHHhCCceeec
Q 048318 95 MGIKIKIVGVTSLNSEAERE----AFMQAGLDLCHT 126 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~~~----~~~~~g~~~~l~ 126 (145)
..|+-.++++++........ .....+.+.++.
T Consensus 349 ~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~ 384 (436)
T PRK11889 349 VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 384 (436)
T ss_pred cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEE
Confidence 34454455565543333322 222346777754
No 223
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.37 E-value=7 Score=28.98 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=47.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHc--CCe---EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHH
Q 048318 27 FALVVDDDCFIRTIHSMALKSL--GFK---VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT 89 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~--g~~---v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~ 89 (145)
.|+++|-+....+.=+.++... ||+ |. ...|+...++...+ +++|+|++|.+-|.+++..+.
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~-~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE-NPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc-CCceEEEEecCCccchHHHHH
Confidence 4688888888888888888754 554 33 55599988888866 689999999998888776543
No 224
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=85.28 E-value=10 Score=26.43 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=47.2
Q ss_pred CHHHHHHHHHcCCCcc-EEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 57 NGKEAVDLFRSGAKFD-IVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~d-lvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..+..+.+.+ ...+ +++.|.+-.+ ...+++++.+++. .++|+++-++-.+.+....++..|+++++.
T Consensus 146 ~~~~~~~~~~~-~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE-LGLEGIIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh-CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 33445555555 4567 6667764432 2236788888765 468888877778888888999999999864
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.23 E-value=16 Score=28.44 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=55.6
Q ss_pred CceEEEEeCcHHHH---HHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC-CCCC--HHHHHHHH-H-hcC
Q 048318 25 RLFALVVDDDCFIR---TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVMN--GIEATREI-R-SMG 96 (145)
Q Consensus 25 ~~~iLii~~~~~~~---~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~-~~~~--~~~~~~~l-~-~~~ 96 (145)
+.+|.+++-|+... +.+...-+..|+.+..+.+..+....+.....+|+||+|.-- ...+ ..+-+..+ . ...
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~ 330 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE 330 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC
Confidence 46788888887533 344444455677776666766666555543468999999631 1122 22233333 3 122
Q ss_pred CcceEEEEeCCCCHHHHHHHH----HhCCceeec
Q 048318 97 IKIKIVGVTSLNSEAEREAFM----QAGLDLCHT 126 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~~----~~g~~~~l~ 126 (145)
+.-..++++............ ..+.+.++.
T Consensus 331 ~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~ 364 (424)
T PRK05703 331 PIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIF 364 (424)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 333456667666555544432 335555543
No 226
>PRK10537 voltage-gated potassium channel; Provisional
Probab=85.21 E-value=10 Score=29.20 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=50.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC--------------------CCCCH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM--------------------PVMNG 85 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~--------------------~~~~~ 85 (145)
-+++|++-++.-....+. |.+.|+.++....... +.... ..++++.-|... .+...
T Consensus 241 ~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~d~~--~~~~~-~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 241 DHFIICGHSPLAINTYLG-LRQRGQAVTVIVPLGL--EHRLP-DDADLIPGDSSDSAVLKKAGAARARAILALRDNDADN 316 (393)
T ss_pred CeEEEECCChHHHHHHHH-HHHCCCCEEEEECchh--hhhcc-CCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHH
Confidence 457788877766665554 5556666553332111 11111 123333333211 11122
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
...+...|+..|+.++++.+. +++......+.|+|..+.
T Consensus 317 l~ivL~ar~l~p~~kIIa~v~--~~~~~~~L~~~GaD~VIs 355 (393)
T PRK10537 317 AFVVLAAKEMSSDVKTVAAVN--DSKNLEKIKRVHPDMIFS 355 (393)
T ss_pred HHHHHHHHHhCCCCcEEEEEC--CHHHHHHHHhcCCCEEEC
Confidence 334445677778888887665 345566778899988764
No 227
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.17 E-value=5.6 Score=25.46 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=52.0
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEE-EcCHHHHHHHHHc-------------CCCccEEEEecCCCCCCHHH
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEV-AENGKEAVDLFRS-------------GAKFDIVFIDKEMPVMNGIE 87 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~-~~~~~~al~~~~~-------------~~~~dlvl~d~~~~~~~~~~ 87 (145)
+..+++|-||..-. ....|...|.+.||.+.- .+...+..+.+.. -...|++|+-. ||..-.+
T Consensus 7 ~~~~l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav--pDdaI~~ 83 (127)
T PF10727_consen 7 QAARLKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV--PDDAIAE 83 (127)
T ss_dssp -----EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S---CCHHHH
T ss_pred CCCccEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe--chHHHHH
Confidence 44567787887743 445666777888999874 3433323222211 13478999854 5555667
Q ss_pred HHHHHHhc---CCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 88 ATREIRSM---GIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 88 ~~~~l~~~---~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
+++.|... .+..-++-.+.....+....+.+.|+.-+
T Consensus 84 va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 84 VAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVA 123 (127)
T ss_dssp HHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEE
T ss_pred HHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEE
Confidence 88888764 33433344455556666777777777443
No 228
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=85.16 E-value=7.3 Score=28.63 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHhcCCcceEE--EEeCCCCHHHHHHHHHhCCceeec-----CCCCHHHHHHHHHHHHhc
Q 048318 83 MNGIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCHT-----KPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~iv--~l~~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~~~ 144 (145)
..++++++++++.. .+|+| ..+.-.+++....+++.|++.+++ +.-++.+....+...+..
T Consensus 189 ~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 189 QAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 35788888888754 57887 666667999999999999999963 444777777777666653
No 229
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=85.07 E-value=16 Score=28.40 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=58.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+++++++.+. .+.++.+.+..+....-..+.++....+.. .|++++--. .+.-|.-+++.+.. .+|+|..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~---aDv~V~pS~-~E~~g~~vlEAmA~---G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS---GDVFVMPSE-SETLGFVVLEAMAS---GVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH---CCEEEECCc-ccccCcHHHHHHHc---CCCEEEc
Confidence 455666665543 334444443322222112233455554433 477665322 22234445555443 5788743
Q ss_pred eCCCCHHHHHHHHHh---CCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQA---GLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~---g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
..... .+.... |-.+++..|-+.+++...+.++++
T Consensus 362 -~~gg~---~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 -RAGGI---PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred -CCCCc---HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 33222 233445 888999999999999999988775
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.82 E-value=10 Score=26.03 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=52.2
Q ss_pred CceEEEEeCcH---HHHHHHHHHHHHcCCeEEEEcC---HH----HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDC---FIRTIHSMALKSLGFKVEVAEN---GK----EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~---~~~~~l~~~L~~~g~~v~~~~~---~~----~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
+.+|.++.-|. ...+.|+.+-+..|..+..+.+ .. ++++.... ..+|+||+|.-=-.....+.++++++
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~-~~~D~vlIDT~Gr~~~d~~~~~el~~ 107 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK-KGYDLVLIDTAGRSPRDEELLEELKK 107 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH-TTSSEEEEEE-SSSSTHHHHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh-cCCCEEEEecCCcchhhHHHHHHHHH
Confidence 34454443332 3457777777888877776553 22 34444444 46999999973211222333333332
Q ss_pred ----cCCcceEEEEeCCCCHHHHHHHH---H-hCCceee
Q 048318 95 ----MGIKIKIVGVTSLNSEAEREAFM---Q-AGLDLCH 125 (145)
Q Consensus 95 ----~~~~~~iv~l~~~~~~~~~~~~~---~-~g~~~~l 125 (145)
..+.-.++++++....+....+. + .+.+.++
T Consensus 108 ~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lI 146 (196)
T PF00448_consen 108 LLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLI 146 (196)
T ss_dssp HHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEE
T ss_pred HhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEE
Confidence 34455566666665555433332 3 2566664
No 231
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.62 E-value=9.6 Score=25.42 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred CCccEEEEecCCCC-----CCHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 69 AKFDIVFIDKEMPV-----MNGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 69 ~~~dlvl~d~~~~~-----~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
..||++++|--+.. .+.-++++.++++++..-+| +|+...+...
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evI-lTGr~~p~~l 142 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELV-LTGRNAPKEL 142 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEE-EECCCCCHHH
Confidence 57999999964322 35668888888877777776 5555544443
No 232
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=84.56 E-value=8.2 Score=27.57 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=52.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcC-----CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-----HHHHHHHHh
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLG-----FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-----IEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-----~~~~~~l~~ 94 (145)
.+|-++|=|+...+..+..+.... -.+. ...|+...++.... ..||+|++|..-|...+ .++.+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 468899999999999999886431 2343 77788887776544 26999999998776543 477777776
Q ss_pred cCCcceEEE
Q 048318 95 MGIKIKIVG 103 (145)
Q Consensus 95 ~~~~~~iv~ 103 (145)
...+--+++
T Consensus 180 ~L~~~Gv~v 188 (246)
T PF01564_consen 180 RLKPDGVLV 188 (246)
T ss_dssp HEEEEEEEE
T ss_pred hcCCCcEEE
Confidence 433323443
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.55 E-value=15 Score=29.69 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=45.4
Q ss_pred ceEEEEeCcHHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCC-CCCH--HHHHHHHHhcCCcc
Q 048318 26 LFALVVDDDCFI---RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNG--IEATREIRSMGIKI 99 (145)
Q Consensus 26 ~~iLii~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~--~~~~~~l~~~~~~~ 99 (145)
.+|.+++-|... .+.++.+-+..|+.+..+.+..+....+..-..+|+||+|.--- ..+. .+.+..++......
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a 460 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVT 460 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCC
Confidence 467777766533 23444444445666776666666555554324589999997421 1121 12223344332334
Q ss_pred eEEEEeCCCCHHH
Q 048318 100 KIVGVTSLNSEAE 112 (145)
Q Consensus 100 ~iv~l~~~~~~~~ 112 (145)
.++++........
T Consensus 461 ~lLVLpAtss~~D 473 (559)
T PRK12727 461 SLLVLPANAHFSD 473 (559)
T ss_pred cEEEEECCCChhH
Confidence 4556655554333
No 234
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=84.54 E-value=6.6 Score=29.18 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=49.1
Q ss_pred EcCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCce
Q 048318 55 AENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 55 ~~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~ 123 (145)
..+..+|++.... ...-|++++- |.+.-+++++.++++.|++|+.+.--+.+-..+..+.+.|.-+
T Consensus 221 p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 221 PGARGLALRAVERDVSEGADMIMVK---PGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred CcCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 3456677766432 1358999996 4566899999999988899999987777777777777776544
No 235
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=84.49 E-value=13 Score=27.00 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=59.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv 102 (145)
++-++-+.........+...|...|..+....+.......+.. ..++=+++-...++. +..+.++..+++ .+|+|
T Consensus 132 rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~-~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~--ga~vI 208 (281)
T COG1737 132 RIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLAL-LTPGDVVIAISFSGYTREIVEAAELAKER--GAKVI 208 (281)
T ss_pred eEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHh-CCCCCEEEEEeCCCCcHHHHHHHHHHHHC--CCcEE
Confidence 3444556677778888999999999999988887777644444 456655555555543 345666676665 48999
Q ss_pred EEeCCCCHHHHH
Q 048318 103 GVTSLNSEAERE 114 (145)
Q Consensus 103 ~l~~~~~~~~~~ 114 (145)
.+|+........
T Consensus 209 aiT~~~~spla~ 220 (281)
T COG1737 209 AITDSADSPLAK 220 (281)
T ss_pred EEcCCCCCchhh
Confidence 999986665543
No 236
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=84.43 E-value=11 Score=25.97 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec------CCCCCCHHHHHHHHHhcCCcceEEEEeCCCCH
Q 048318 38 RTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK------EMPVMNGIEATREIRSMGIKIKIVGVTSLNSE 110 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~------~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~ 110 (145)
.+.+-..++..+..+. =+++.++++..... .+|+|=.=+ ...+.+.+++++++.+. .+|+|.=..-.++
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~--G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tp 156 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAEL--GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT--T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SH
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHc--CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCH
Confidence 4445555555553333 67899999988765 489875432 11234678999999875 6888877777899
Q ss_pred HHHHHHHHhCCceeecC
Q 048318 111 AEREAFMQAGLDLCHTK 127 (145)
Q Consensus 111 ~~~~~~~~~g~~~~l~k 127 (145)
+...++++.|++..++-
T Consensus 157 e~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 157 EQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHHHHHHTT-SEEEE-
T ss_pred HHHHHHHhcCCeEEEEC
Confidence 99999999999999754
No 237
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.38 E-value=14 Score=27.06 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=60.5
Q ss_pred eEEEEeCcHHHHHHHHHHHH----HcC--CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC-Cc
Q 048318 27 FALVVDDDCFIRTIHSMALK----SLG--FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG-IK 98 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~----~~g--~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~-~~ 98 (145)
.|||-|+|-...-.+...++ ..+ ..+ ..+.+.+++.+.... .+|.|.+|- -+.+.++++.+.. ++
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~--gaDyI~lD~-----~~~e~l~~~~~~~~~~ 232 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA--GADIIMFDN-----RTPDEIREFVKLVPSA 232 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc--CCCEEEECC-----CCHHHHHHHHHhcCCC
Confidence 67888887666644555443 234 233 478899998888754 589999962 3456666665532 34
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+|++ ..+.-+.+...+....|+|.+-.
T Consensus 233 i~i~-AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 233 IVTE-ASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred ceEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 4443 45556788888999999998743
No 238
>PRK14098 glycogen synthase; Provisional
Probab=84.25 E-value=16 Score=28.84 Aligned_cols=111 Identities=5% Similarity=-0.090 Sum_probs=57.8
Q ss_pred CceEEEEeCcH-HHHHHHHHHHHHcCCeEEEE--cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 25 RLFALVVDDDC-FIRTIHSMALKSLGFKVEVA--ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~-~~~~~l~~~L~~~g~~v~~~--~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+.+.+|+.+.+ .....++...+..+-.+... -+..++-... . ..|+.++-- ..+.-|...+..++. .+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~-a--~aDi~l~PS-~~E~~Gl~~lEAma~---G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI-A--GLDMLLMPG-KIESCGMLQMFAMSY---GTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH-H--hCCEEEeCC-CCCCchHHHHHHHhC---CCCe
Confidence 45666766543 24456666555544233322 2333333333 2 258877642 233345655555554 3444
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
|+.....-.+...+....+..+++..|.+.+.|...+.+++
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 44332222222222222367889999999999999988764
No 239
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=84.17 E-value=6.3 Score=30.52 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=48.0
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
+..+-++++.. ...|+|++|..... .--.++++.+++.+|+..||. .+--.....+....+|+|..
T Consensus 251 ~dK~rl~ll~~-aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 251 DDKERLDLLVQ-AGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred chhHHHHHhhh-cCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCcee
Confidence 44555666665 57999999976432 224678899999999887763 44456777888899999986
No 240
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.15 E-value=4.6 Score=29.71 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=50.8
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++..+.-. .+-.+.++..++..+..||.+-. ++.++..++++.|+|-++.-.++++++...+..+
T Consensus 170 sd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~ 240 (289)
T PRK07896 170 GDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRR 240 (289)
T ss_pred cceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 666666654322 23356777778777777776555 4666888999999999999999999999998753
No 241
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.01 E-value=11 Score=25.63 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCeEE----EEcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVE----VAENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~----~~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
....+.+..++.|..+. ...+..+..+.. . ...|.+.+...-. ...+.+.++.+++. +++|+++..+-
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~-~-~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI 167 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL-K-LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGI 167 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH-H-CCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCc
Confidence 34555556666675543 445777777743 3 3589888753211 13456667777654 46788755444
Q ss_pred CCHHHHHHHHHhCCceeec
Q 048318 108 NSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~ 126 (145)
+.+...++++.|++.++.
T Consensus 168 -~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 168 -TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -CHHHHHHHHhcCCCEEEE
Confidence 578888999999998854
No 242
>PLN02476 O-methyltransferase
Probab=83.83 E-value=15 Score=26.95 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=46.1
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc---CCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS---GAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~---~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
++.-+|.++...+..+..++..|+. +. ...+..+.+..+.. ...||+||+|..- .+-.+.++.+..
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~ 216 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK--RMYQDYFELLLQ 216 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH--HHHHHHHHHHHH
Confidence 5889999999999999999998875 44 55677777765531 1369999999852 223444444433
No 243
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=83.80 E-value=16 Score=27.24 Aligned_cols=97 Identities=11% Similarity=0.173 Sum_probs=59.4
Q ss_pred eEEEEeCcHHHHHHHHHHHH-------HcCC--eEE-EEcCHHHHHHHHH------cCCCccEEEEecC-CCCC----CH
Q 048318 27 FALVVDDDCFIRTIHSMALK-------SLGF--KVE-VAENGKEAVDLFR------SGAKFDIVFIDKE-MPVM----NG 85 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~-------~~g~--~v~-~~~~~~~al~~~~------~~~~~dlvl~d~~-~~~~----~~ 85 (145)
.|||-|+|-...-.+...++ ..++ .+. .+.+.+|+.+.+. . .+|+|++|=- .+.. +-
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~a--gaDiImLDnm~~~~~~~~~~~ 249 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKT--SLTRVMLDNMVVPLENGDVDV 249 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccC--CCCEEEeCCCcccccccCCCH
Confidence 47777777655433333322 2333 233 7889999999987 4 4899999932 1111 33
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
-++-+.+.......+ +-.++.-+.+.+.+....|+|-+-.
T Consensus 250 e~l~~av~~~~~~~~-lEaSGGIt~~ni~~yA~tGVD~Is~ 289 (308)
T PLN02716 250 SMLKEAVELINGRFE-TEASGNVTLDTVHKIGQTGVTYISS 289 (308)
T ss_pred HHHHHHHHhhCCCce-EEEECCCCHHHHHHHHHcCCCEEEe
Confidence 333333332222333 5678888999999999999987743
No 244
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=83.73 E-value=11 Score=28.26 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=42.3
Q ss_pred ccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 71 FDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 71 ~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.|+|++|..... ....+.++.+++..|. |.|+...-.+.+....+.++|++.+.+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~-~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPD-SFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCC-CEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999986543 3456778888876644 5555666778999999999999998643
No 245
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.66 E-value=19 Score=28.13 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=55.4
Q ss_pred CceEEEEeCcHHHHH---HHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCCCCHHHHHHHHHh----c-
Q 048318 25 RLFALVVDDDCFIRT---IHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPVMNGIEATREIRS----M- 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~---~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~~~~~~~~~~l~~----~- 95 (145)
+.+|.+++-|..... .++...+..|..+..+.+..++.+.+.. ..+|+|++|.. .+..+. +.++.+.+ .
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~ 329 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSELILIDTAGYSHRNL-EQLERMQSFYSCFG 329 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhc
Confidence 457888888774332 3333334456666666666677776665 57999999962 111122 22333322 1
Q ss_pred --CCcceEEEEeCCCCHHHHHHHHH----hCCceeec
Q 048318 96 --GIKIKIVGVTSLNSEAEREAFMQ----AGLDLCHT 126 (145)
Q Consensus 96 --~~~~~iv~l~~~~~~~~~~~~~~----~g~~~~l~ 126 (145)
.+.-.++++++.........+.+ .|.+.++.
T Consensus 330 ~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 12345666777766655444443 45666643
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.63 E-value=15 Score=26.79 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=52.6
Q ss_pred ceEEEEeCcHH---HHHHHHHHHHHcCCeEEEEcCHHHH---HHHHHcCCCccEEEEecCCCCCCHHHHHHHHH----hc
Q 048318 26 LFALVVDDDCF---IRTIHSMALKSLGFKVEVAENGKEA---VDLFRSGAKFDIVFIDKEMPVMNGIEATREIR----SM 95 (145)
Q Consensus 26 ~~iLii~~~~~---~~~~l~~~L~~~g~~v~~~~~~~~a---l~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~----~~ 95 (145)
.++.+++-|.. ....++...+..|+.+..+.+..+. ++.+.....+|+||+|.-=......+.++.++ ..
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~ 183 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQV 183 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhh
Confidence 45666666554 4455566666678888776665443 33333323689999997422211223333333 23
Q ss_pred CCcceEEEEeCCCCHHHHHHH----HHhCCceeec
Q 048318 96 GIKIKIVGVTSLNSEAEREAF----MQAGLDLCHT 126 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~~~----~~~g~~~~l~ 126 (145)
.|+-.++++++.......... ...+.+.++.
T Consensus 184 ~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 184 EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 344445566655444333222 2345666643
No 247
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=83.63 E-value=13 Score=26.24 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=58.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv~l 104 (145)
-+|||-+...-+...+.+.|.+.|-.|..+..-++.+..... ..|++.=.-++..|.++ -++...+++.+|.+-+++=
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~-~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliN 84 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA-ENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLIN 84 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh-cCcchheeeecccchhhHHHHHHHHHhhCCchheeee
Confidence 368999998889999999999999899888877777777765 34665433333345544 4688899988998877654
Q ss_pred e
Q 048318 105 T 105 (145)
Q Consensus 105 ~ 105 (145)
.
T Consensus 85 N 85 (245)
T COG3967 85 N 85 (245)
T ss_pred c
Confidence 3
No 248
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.59 E-value=14 Score=28.72 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=55.4
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC-CCC---CHH---HHHHHHHhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVM---NGI---EATREIRSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~-~~~---~~~---~~~~~l~~~~~~~~iv~l 104 (145)
--|....+.+...|...||.++.- . ...|+++++.=- ... ... ..++++++..+..+||+.
T Consensus 12 ~~N~~ds~~~~~~l~~~G~~~~~~-----------~-~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~ 79 (439)
T PRK14328 12 QMNEEDSEKLAGMLKSMGYERTEN-----------R-EEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVC 79 (439)
T ss_pred CCCHHHHHHHHHHHHHCcCEECCC-----------c-CcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 456777888889998899887641 1 347999998522 221 223 223344444566666654
Q ss_pred eCCCCHH-HHHHHH-HhCCceeecCCCCHHHHHHHHHHHH
Q 048318 105 TSLNSEA-EREAFM-QAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 105 ~~~~~~~-~~~~~~-~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+...... ...+.. ...-.+++..+-....+...+..+.
T Consensus 80 GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~ 119 (439)
T PRK14328 80 GCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVK 119 (439)
T ss_pred CchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHh
Confidence 4333220 122232 3333345567777777777666554
No 249
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=83.57 E-value=5.5 Score=29.02 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEe
Q 048318 36 FIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d 77 (145)
.....+.+.|++.|+++.......+.++.+.. ..+|+|+.-
T Consensus 23 ~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~-~~~D~v~~~ 63 (304)
T PRK01372 23 NSGAAVLAALREAGYDAHPIDPGEDIAAQLKE-LGFDRVFNA 63 (304)
T ss_pred HhHHHHHHHHHHCCCEEEEEecCcchHHHhcc-CCCCEEEEe
Confidence 35578888999999999887666666776665 579999964
No 250
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=83.48 E-value=6.6 Score=26.75 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCccEEEEecCCCC-----CCHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 69 AKFDIVFIDKEMPV-----MNGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 69 ~~~dlvl~d~~~~~-----~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
..||++++|--+.. .+--++++.++.+++.+-+| +|+...+...
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI-LTGR~~p~~L 162 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI-LTGPEMPESL 162 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE-EECCCCCHHH
Confidence 57999999964322 46778889888877777776 5655544443
No 251
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.48 E-value=10 Score=29.64 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=62.3
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCC---CCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMP---VMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~---~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
--|....+.+...|...||. ..+.+ ....|++|++. ..- +....+.+..+++..|+..|++.+..
T Consensus 13 ~~N~~DSe~m~~~L~~~G~~-~~~~~----------~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 13 QMNLYDSERMAGLLEAAGYE-ELVED----------PEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CccHHHHHHHHHHHHHcCCc-cccCC----------cccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 45667778888899888885 11111 12369999985 221 23445566666666677777665444
Q ss_pred CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 108 NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.... -.......-.+++.-|-+...+...|.+...
T Consensus 82 aq~~-~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~ 116 (437)
T COG0621 82 AQAE-EEILERAPEVDIVLGPQNKERLPEAIEKALR 116 (437)
T ss_pred cccC-HHHHhhCCCceEEECCccHHHHHHHHHHHhh
Confidence 4333 3333445545667789999998888887654
No 252
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=83.43 E-value=6.7 Score=27.03 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 63 DLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 63 ~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
+.+.+ ..||+|++|--+.. .+.-++++.|.++++.+-+| +|+...+....
T Consensus 109 ~~l~~-~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV-lTGR~~p~~Li 163 (191)
T PRK05986 109 RMLAD-ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV-ITGRGAPRELI 163 (191)
T ss_pred HHHhC-CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE-EECCCCCHHHH
Confidence 33444 57999999964432 35778889988777777776 56655444433
No 253
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=83.40 E-value=5.2 Score=27.33 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=35.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCH-HHHHHHHHcCCCccEEEEec
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENG-KEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~-~~al~~~~~~~~~dlvl~d~ 78 (145)
||+||........+...|++.|+.+...... .+. ..+.. ..||.+++.-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~-~~~~~iilsg 51 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIEA-LNPTHLVISP 51 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHhh-CCCCEEEEeC
Confidence 8999999999999999999999888765533 222 22333 3578777654
No 254
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.24 E-value=21 Score=28.38 Aligned_cols=98 Identities=9% Similarity=0.081 Sum_probs=59.6
Q ss_pred EeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC----CHH---HHHHHHHhcCCcceEEE
Q 048318 31 VDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM----NGI---EATREIRSMGIKIKIVG 103 (145)
Q Consensus 31 i~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~----~~~---~~~~~l~~~~~~~~iv~ 103 (145)
+--|....+.+...|...||.++.. . ...|+++++.---.. ... ..++.+++..+.++||+
T Consensus 23 C~~N~~dse~~~~~L~~~G~~~~~~-----------~-e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~Vvv 90 (502)
T PRK14326 23 CQMNVHDSERLAGLLEAAGYVRAAE-----------G-QDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQIAV 90 (502)
T ss_pred CCCcHHHHHHHHHHHHHCCCEECCC-----------c-CCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567888899999999999887641 1 247999998532222 122 44455566667777665
Q ss_pred EeCCCCHHHHHHHHH--hCCceeecCCCCHHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQ--AGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 104 l~~~~~~~~~~~~~~--~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
++........++++ .++| ++..+.....+...+.++.
T Consensus 91 -gGc~a~~~~ee~~~~~p~VD-~Vvg~~~~~~i~~ll~~~~ 129 (502)
T PRK14326 91 -GGCLAQKDRDTILKRAPWVD-VVFGTHNIGSLPTLLERAR 129 (502)
T ss_pred -ECcccccCHHHHHhhCCCCe-EEECCCCHHHHHHHHHHHh
Confidence 44333333344443 2455 6667777777766665543
No 255
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=82.95 E-value=15 Score=28.46 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEe---cCCC-CCCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID---KEMP-VMNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d---~~~~-~~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
-|....+.+...|...||.++.. . ..+|+|+++ ...+ .....+.++.+++..+..+.|++++..
T Consensus 11 ~N~~ds~~~~~~l~~~g~~~~~~-----------~-~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~ 78 (429)
T TIGR00089 11 MNEADSEIMAGLLKEAGYEVTDD-----------P-EEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCL 78 (429)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcc
Confidence 45667788888998889876631 1 358999997 2222 234567777777665544234455544
Q ss_pred CHHHHHHHH-H-hCCceeecCCCCHHHHHHHHHHH
Q 048318 109 SEAEREAFM-Q-AGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 109 ~~~~~~~~~-~-~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
......+++ . .++|. +..+-....+...+...
T Consensus 79 a~~~~ee~~~~~~~vd~-vvg~~~~~~~~~~l~~~ 112 (429)
T TIGR00089 79 AQREGEELLKRIPEVDI-VLGPQNKERIPEAIESA 112 (429)
T ss_pred cccCHHHHHhhCCCCCE-EECCCCHHHHHHHHHHH
Confidence 333333333 2 35665 45666666666555543
No 256
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=82.69 E-value=15 Score=26.29 Aligned_cols=102 Identities=18% Similarity=0.313 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhc--CCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSM--GIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~--~~~~~iv~l~~~ 107 (145)
....+-..|+..|+.+. =+.++-..+..+.. .+||.|=+|-.+-. .....+++.+-.. ..++.+| .-.-
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEGV 214 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEGV 214 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-Eeec
Confidence 34445556778898765 57788889999887 78999999975532 2334566665442 2244444 3444
Q ss_pred CCHHHHHHHHHhCCce----eecCCCCHHHHHHHHHH
Q 048318 108 NSEAEREAFMQAGLDL----CHTKPLSVDKILPLMED 140 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i~~ 140 (145)
.+.+....+.+.|++. |+.||...+++...+..
T Consensus 215 Et~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 215 ETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred CCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 6677777888888773 36789988777766543
No 257
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=82.52 E-value=11 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCccEEEEecCCC-----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 69 AKFDIVFIDKEMP-----VMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 69 ~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
..+|+|++|--+. =.+.-++++.++++++.+-+| +|+..-+....
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evV-lTGR~~p~~l~ 145 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVI-ITGRGCPQDLL 145 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEE-EECCCCCHHHH
Confidence 5799999996332 135668888888877777776 56655444443
No 258
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.43 E-value=7.5 Score=28.63 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=50.1
Q ss_pred ccEEEEecCCCCC--CHHHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPVM--NGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~~--~~~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.-.. +-.+.++..|+..+ ..+|. ..-.+.++..+++++|+|-++.-.++++++...+..+
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIe--VEv~tleea~~a~~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVE--VEVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEE--EECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 6777776554322 23466777777665 34544 3446778899999999999999999999999998753
No 259
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=82.40 E-value=15 Score=28.61 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=56.1
Q ss_pred EeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCCC---CCHHHHHHHH---HhcCCcceEEE
Q 048318 31 VDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMPV---MNGIEATREI---RSMGIKIKIVG 103 (145)
Q Consensus 31 i~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~---~~~~~~~~~l---~~~~~~~~iv~ 103 (145)
+--|....+.+...|...||.++.. . ...|+++++. ..-+ ....+.+.++ ++..|..+|++
T Consensus 16 C~~N~~ds~~~~~~l~~~G~~~~~~-----------~-~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv 83 (448)
T PRK14333 16 CQMNKADSERMAGILEDMGYQWAED-----------E-LQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVV 83 (448)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3567778889999999999887741 1 2369999884 2222 2233444333 34456666654
Q ss_pred EeCCCCHHHHHHHHH--hCCceeecCCCCHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQ--AGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 104 l~~~~~~~~~~~~~~--~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
++..........++ .++ |++..+-....+...+..+
T Consensus 84 -~Gc~a~~~~~~~~~~~p~v-D~v~g~~~~~~~~~ll~~~ 121 (448)
T PRK14333 84 -AGCVAQQEGESLLRRVPEL-DLVMGPQHANRLEDLLEQV 121 (448)
T ss_pred -ECccCccCHHHHHhcCCCC-CEEECCCCHHHHHHHHHHH
Confidence 44333333344443 355 4455777766666665544
No 260
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=82.38 E-value=15 Score=25.91 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHcCCCccEEEEecCCCC-C--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 56 ENGKEAVDLFRSGAKFDIVFIDKEMPV-M--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~dlvl~d~~~~~-~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..+.++.+.+...-.+++.|+.-.+ + ..+++++.+++.. +.|+++-..-.+.+....+.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 356777776665333458889986653 2 3467778887655 78999888888999999999999988864
No 261
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.30 E-value=13 Score=25.32 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=47.5
Q ss_pred EcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 55 AENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
+.+..++.+.... .+|.+-+ .|.. -|.+.++.++...+++|++.+. .-+.+...++++.|++.+
T Consensus 112 ~~t~~e~~~A~~~--Gadyv~~---Fpt~~~~G~~~l~~~~~~~~~ipvvaiG-GI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVTAWQA--GASCVKV---FPVQAVGGADYIKSLQGPLGHIPLIPTG-GVTLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHHHHHC--CCCEEEE---CcCCcccCHHHHHHHHhhCCCCcEEEeC-CCCHHHHHHHHHCCCeEE
Confidence 5677777766654 4787766 4543 3789999999877789987654 456777889999999876
No 262
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=82.12 E-value=19 Score=26.93 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec-CC----C-CC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 42 SMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK-EM----P-VM-NGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 42 ~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~-~~----~-~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
...+...|..+. .+.+.+++...... .+|.|++-= +- . +. +.+.++..++... ++|+|+-..-.+...+
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~~--G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~i 205 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAKA--GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGI 205 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHT--T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH--SS-EEEESS--SHHHH
T ss_pred HHHHHHcCCccccccCCHHHHHHhhhc--CCCEEEEeccccCCCCCccccceeeHHHHHhhhc-CCcEEEecCcCCHHHH
Confidence 345667787766 88899999887765 489888762 11 1 12 2567777777644 5899887777888889
Q ss_pred HHHHHhCCceee
Q 048318 114 EAFMQAGLDLCH 125 (145)
Q Consensus 114 ~~~~~~g~~~~l 125 (145)
..++..||++..
T Consensus 206 aaal~lGA~gV~ 217 (330)
T PF03060_consen 206 AAALALGADGVQ 217 (330)
T ss_dssp HHHHHCT-SEEE
T ss_pred HHHHHcCCCEee
Confidence 999999999986
No 263
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=81.79 E-value=8.4 Score=27.56 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=38.4
Q ss_pred HcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCC
Q 048318 66 RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 66 ~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
.. +.||++++--=.+...|-.-.+.+-+. ..+|.|++++....... ++++....+|+.-+.+
T Consensus 57 ~~-~~pDf~i~isPN~a~PGP~~ARE~l~~-~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~D 118 (277)
T PRK00994 57 EE-WKPDFVIVISPNPAAPGPKKAREILKA-AGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKAD 118 (277)
T ss_pred Hh-hCCCEEEEECCCCCCCCchHHHHHHHh-cCCCEEEEcCCCccchH-HHHHhcCCcEEEEecC
Confidence 44 679988876555556666555555432 25688889888777655 5555555556544443
No 264
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.65 E-value=5.9 Score=29.20 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=51.4
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.-. .+-.+.++.+++..+..+|. ..-.+.++..+++++|+|-++.-.++++++...+..+
T Consensus 176 sD~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIe--VEvetleea~eA~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 176 YDGILIKENHIAAAGGVGAALDAAFALNAGVPVQ--IEVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CceEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEE--EEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 677777765532 23346778888765555543 4455788899999999999999999999999988754
No 265
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=81.64 E-value=11 Score=26.17 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=33.8
Q ss_pred eEEEEeCc---------HHHHHHHHHHHH-HcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCC
Q 048318 27 FALVVDDD---------CFIRTIHSMALK-SLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP 81 (145)
Q Consensus 27 ~iLii~~~---------~~~~~~l~~~L~-~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~ 81 (145)
|||++... +.....++.+|+ ..||.|+...+....-.... ..+|+|++.....
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCC
Confidence 46777655 257788888888 67899998777443222112 3599999988764
No 266
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=81.53 E-value=17 Score=26.86 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=50.6
Q ss_pred EcCHHHHHHHHHcCCCccEEEEec--C---CCC---CCHHHHHHHHHhcCCcceEEEEeCC-CCHHHHHHHHHhCCcee
Q 048318 55 AENGKEAVDLFRSGAKFDIVFIDK--E---MPV---MNGIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLC 124 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~d~--~---~~~---~~~~~~~~~l~~~~~~~~iv~l~~~-~~~~~~~~~~~~g~~~~ 124 (145)
.++.+++.+... ..+|.+-+.. . .+. .-+++.++.+++..+++|+|+..++ .+.+....+.+.|++.+
T Consensus 153 ~t~peea~~f~~--tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki 229 (293)
T PRK07315 153 LAPIEDAKAMVE--TGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred CCCHHHHHHHHH--cCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 378899988884 3589888883 2 222 2468899999887656899888765 46677888999998876
No 267
>PLN02823 spermine synthase
Probab=81.44 E-value=20 Score=26.96 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=44.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc-----CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCC--C-----HHHHHH-H
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL-----GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--N-----GIEATR-E 91 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~-----g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~-----~~~~~~-~ 91 (145)
.+|.++|-|+...+..+..+... +-.+. ...|+.+.++.. . ..||+|++|..-|.. . ..++.+ .
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~-~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~ 205 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-D-EKFDVIIGDLADPVEGGPCYQLYTKSFYERI 205 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-C-CCccEEEecCCCccccCcchhhccHHHHHHH
Confidence 46899999999999999888532 12344 556777766543 2 469999999754421 1 346666 5
Q ss_pred HHh
Q 048318 92 IRS 94 (145)
Q Consensus 92 l~~ 94 (145)
+++
T Consensus 206 ~~~ 208 (336)
T PLN02823 206 VKP 208 (336)
T ss_pred HHH
Confidence 554
No 268
>PRK10060 RNase II stability modulator; Provisional
Probab=81.40 E-value=29 Score=28.56 Aligned_cols=105 Identities=11% Similarity=0.199 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHh--cCCcceEEEEeC
Q 048318 36 FIRTIHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRS--MGIKIKIVGVTS 106 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~--~~~~~~iv~l~~ 106 (145)
.........|++.|+.+.. +.++...+..+.. .++|.|=+|-.+- +.....+++.+-. +...+++| ..+
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~-l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeG 618 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR-FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEG 618 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHh-CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-Eec
Confidence 3444455677888988774 6677888888877 6899999996432 2234455555543 22245554 455
Q ss_pred CCCHHHHHHHHHhCCce----eecCCCCHHHHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDL----CHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i~~~~ 142 (145)
-.+.+....+...|++. |+.||...+++...+++..
T Consensus 619 VEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 619 VETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred CCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 56777777788888753 3678999999888776543
No 269
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=81.28 E-value=5.9 Score=26.09 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=45.5
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE---------------EEcCHHHHHHHHHc---CCCccEEEEec-CCCCCC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE---------------VAENGKEAVDLFRS---GAKFDIVFIDK-EMPVMN 84 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~---------------~~~~~~~al~~~~~---~~~~dlvl~d~-~~~~~~ 84 (145)
++.++||...-....+....+|+..++.+. ..... -....+.. ...||+||+|- +..|-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcCcccccCccEEEEeccccCCHH
Confidence 567899999999999999999986653322 11111 12222221 24699999995 444433
Q ss_pred HHHHHHHHHhc--CCcceEEEEeCCC
Q 048318 85 GIEATREIRSM--GIKIKIVGVTSLN 108 (145)
Q Consensus 85 ~~~~~~~l~~~--~~~~~iv~l~~~~ 108 (145)
..-+.-.++.. .....+|.+|+..
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCC
Confidence 33333344432 2235778887754
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.22 E-value=22 Score=27.21 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=49.5
Q ss_pred ceEEEEeCcHH---HHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCCCCH--HHHHHHHHhc-CCc
Q 048318 26 LFALVVDDDCF---IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPVMNG--IEATREIRSM-GIK 98 (145)
Q Consensus 26 ~~iLii~~~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~~~~--~~~~~~l~~~-~~~ 98 (145)
.+|.++..|.. ..+.++.+-+..|..+..+.+..+....+.....+|+|++|.- ....+. .+.+..+... .+.
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~ 247 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPV 247 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCC
Confidence 35667766654 3456666666678777777666555444443245899999963 222222 2333444332 223
Q ss_pred ceEEEEeCCCCHHHHH
Q 048318 99 IKIVGVTSLNSEAERE 114 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~ 114 (145)
-.++++++........
T Consensus 248 ~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 248 QRLLLLNATSHGDTLN 263 (374)
T ss_pred eEEEEecCccChHHHH
Confidence 3466676666554433
No 271
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=81.20 E-value=6.4 Score=28.47 Aligned_cols=49 Identities=29% Similarity=0.186 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcCCcceEEEEeCCC------CHHHHHHHHHhCCceeecCCCCHH
Q 048318 84 NGIEATREIRSMGIKIKIVGVTSLN------SEAEREAFMQAGLDLCHTKPLSVD 132 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l~~~~------~~~~~~~~~~~g~~~~l~kP~~~~ 132 (145)
+.+++++.+|+..+.+|+++++-.. -+....++.++|+++++.--+.++
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~e 127 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPE 127 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGG
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChH
Confidence 3567778888666788999887642 334567778899999987634333
No 272
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.17 E-value=32 Score=29.02 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=57.7
Q ss_pred ceEEEEeCcHHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC-CCCC--HHHHHHHHHh-cCCc
Q 048318 26 LFALVVDDDCFI---RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVMN--GIEATREIRS-MGIK 98 (145)
Q Consensus 26 ~~iLii~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~-~~~~--~~~~~~~l~~-~~~~ 98 (145)
.+|.++.-|... .+.++.+-+..|..+..+.+..+..+.+..-..+|+||+|.-= +..+ -.+.+..+.. ..+.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~ 295 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPV 295 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCC
Confidence 467777766543 4566666666787777777777776666553468999999731 2122 2333334332 3344
Q ss_pred ceEEEEeCCCCHHHHH---HHHHh----CCceeec
Q 048318 99 IKIVGVTSLNSEAERE---AFMQA----GLDLCHT 126 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~---~~~~~----g~~~~l~ 126 (145)
-.++++.......... ..++. +.+.+|.
T Consensus 296 e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 296 RRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred eEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 4566666655444333 33332 5666653
No 273
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.07 E-value=19 Score=26.20 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCceEEEEeCcHH---HHHHHHHHHHHcCCeEEEEc---CHH----HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHH
Q 048318 24 LRLFALVVDDDCF---IRTIHSMALKSLGFKVEVAE---NGK----EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIR 93 (145)
Q Consensus 24 ~~~~iLii~~~~~---~~~~l~~~L~~~g~~v~~~~---~~~----~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~ 93 (145)
.+.+|++++-|.. ..+.++...+..|..+.... +.. +++..... ..+|+||+|.-=-.......+.+++
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~-~~~D~ViIDT~G~~~~d~~~~~el~ 177 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA-RNIDVVLIDTAGRLQNKVNLMDELK 177 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH-CCCCEEEEeCCCCCcchHHHHHHHH
Confidence 3568899988753 23455555566675554332 221 23333333 4699999997421112223333222
Q ss_pred h----c------CCcceEEEEeCCCCHHHHHHH---H-HhCCceeec
Q 048318 94 S----M------GIKIKIVGVTSLNSEAEREAF---M-QAGLDLCHT 126 (145)
Q Consensus 94 ~----~------~~~~~iv~l~~~~~~~~~~~~---~-~~g~~~~l~ 126 (145)
. . .++-.++++......+....+ . ..+.+.++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 178 KIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 2 1 245556666665544333332 2 245666643
No 274
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=80.84 E-value=12 Score=27.42 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=36.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCe---E-EEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFK---V-EVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~---v-~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
.|.-+|-.....+..+..++-+|+. + ....+.-+.+..+..+..||+|++|.
T Consensus 148 ~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 148 EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 4789999999999999998877754 2 36668877777665546899999995
No 275
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=80.66 E-value=10 Score=27.50 Aligned_cols=59 Identities=25% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCC------HHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNS------EAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~------~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
+++++.+|+....+|+++++-... +.....+.+.|+++++. |.-+-+....+....+++
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv-pDLP~ee~~~~~~~~~~~ 146 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV-PDLPPEESDELLKAAEKH 146 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe-CCCChHHHHHHHHHHHHc
No 276
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=80.61 E-value=8.4 Score=26.48 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=35.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
++|+|+|-.......+...|+..|+.+....+..+ + ..+|.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~---~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I---LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H---ccCCEEEE
Confidence 47899999999999999999999999887765432 2 24898888
No 277
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=80.32 E-value=26 Score=27.39 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=54.5
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCC---CCHHHHHHHH---HhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPV---MNGIEATREI---RSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~---~~~~~~~~~l---~~~~~~~~iv~l 104 (145)
--|....+.+...|...||.++. . ...|+++++.= .-. ....+.+..+ ++..|..+||+.
T Consensus 14 ~~N~~dse~~~~~l~~~G~~~~~------------~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~ 80 (446)
T PRK14337 14 QMNVNDSDWLARALVARGFTEAP------------E-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVG 80 (446)
T ss_pred CCcHHHHHHHHHHHHHCCCEECC------------c-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45777788889999989987743 1 13699999852 222 2233443334 555667666654
Q ss_pred eCCCCHHHHHHHH-HhCCceeecCCCCHHHHHHHHHHH
Q 048318 105 TSLNSEAEREAFM-QAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 105 ~~~~~~~~~~~~~-~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+..... ...+.+ ...--|++..+-....+...+..+
T Consensus 81 GC~a~~-~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~ 117 (446)
T PRK14337 81 GCVAQQ-IGSGFFSRFPQVRLVFGTDGIAMAPQALERL 117 (446)
T ss_pred CCcccc-ccHHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 443322 222222 333344556677776666655543
No 278
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.31 E-value=16 Score=25.01 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred EcCHHHHHHHHHcCCCccEEEEecC--CCCCCHHHHHHHHHhcCCcceEEEEeCCCCHH--HHHHHHHhCCceeecCCCC
Q 048318 55 AENGKEAVDLFRSGAKFDIVFIDKE--MPVMNGIEATREIRSMGIKIKIVGVTSLNSEA--EREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~d~~--~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~--~~~~~~~~g~~~~l~kP~~ 130 (145)
+.+.+++++.... -...+-+++.. +....|.+.++.+++..+...+++=+-..+.. ....+...|++.+......
T Consensus 8 ~~~~~~a~~~~~~-l~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 8 LLDIEEALELAEK-VADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred CCCHHHHHHHHHH-cccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC
Q ss_pred HHHHHHHHHHHHhcC
Q 048318 131 VDKILPLMEDLMKNN 145 (145)
Q Consensus 131 ~~~L~~~i~~~~~~~ 145 (145)
.......+-+..+++
T Consensus 87 ~~~~~~~~i~~~~~~ 101 (206)
T TIGR03128 87 DDATIKGAVKAAKKH 101 (206)
T ss_pred CHHHHHHHHHHHHHc
No 279
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=80.26 E-value=18 Score=25.54 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCccEEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 58 GKEAVDLFRSGAKFDIVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..+.++.+.. ..-.+++.|++-.+ ....++++.+.+. ..+|+++-+.-.+.+....++..|++..+.
T Consensus 148 ~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5666666665 42348889986543 2346777777764 478998888888999999999999998874
No 280
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=80.16 E-value=14 Score=25.04 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCccEEEEecCC-----CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHH
Q 048318 69 AKFDIVFIDKEM-----PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREA 115 (145)
Q Consensus 69 ~~~dlvl~d~~~-----~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~ 115 (145)
..||+|++|--+ .=.+.-++++.+..+++.+-+| +|....+....+
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV-lTGR~~~~~l~e 145 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV-LTGRNAPEELIE 145 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE-EE-SS--HHHHH
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE-EECCCCCHHHHH
Confidence 479999999532 2246778888888777777776 566655544443
No 281
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=80.14 E-value=21 Score=26.22 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=58.2
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE--EEcCHH---HHHHHHHcCCCccEEEEecCC---------CCC----CH
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE--VAENGK---EAVDLFRSGAKFDIVFIDKEM---------PVM----NG 85 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~--~~~~~~---~al~~~~~~~~~dlvl~d~~~---------~~~----~~ 85 (145)
++=+||-+|.|+.........-++.|..+. ++...+ ...+++.. ..||++++==+- .+. +.
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~-~~PDIlViTGHD~~~K~~~d~~dl~~YrnS 182 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE-YRPDILVITGHDGYLKNKKDYSDLNNYRNS 182 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH-cCCCEEEEeCchhhhcCCCChhhhhhhhcc
Confidence 344799999999999988888888886655 343333 34455555 689987763211 111 23
Q ss_pred HHHHHHHH---hcCCcc-eEEEEeCCCCHHHHHHHHHhCCce
Q 048318 86 IEATREIR---SMGIKI-KIVGVTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 86 ~~~~~~l~---~~~~~~-~iv~l~~~~~~~~~~~~~~~g~~~ 123 (145)
-.|++..+ +..|+. -+|++++-+ .+.-+..+++||+.
T Consensus 183 kyFVeaV~~aR~~ep~~D~LVIfAGAC-QS~fEall~AGANF 223 (287)
T PF05582_consen 183 KYFVEAVKEARKYEPNLDDLVIFAGAC-QSHFEALLEAGANF 223 (287)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEcchh-HHHHHHHHHcCccc
Confidence 34444443 323322 334444443 44566788999864
No 282
>PLN02778 3,5-epimerase/4-reductase
Probab=80.07 E-value=13 Score=27.09 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=39.1
Q ss_pred cccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEE----cCHHHHHHHHHcCCCccEEEE
Q 048318 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVA----ENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 21 ~~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~----~~~~~al~~~~~~~~~dlvl~ 76 (145)
...+.++|||.+....+-..+...|...|++|+.. .+.+.....+.. ..||.|+-
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~-~~~D~ViH 63 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDA-VKPTHVFN 63 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHh-cCCCEEEE
Confidence 34456789999999999999999999899988632 233333333433 46899883
No 283
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.02 E-value=18 Score=25.51 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=33.8
Q ss_pred EEEEcCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 52 VEVAENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 52 v~~~~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+....+.+++++..+. ..... .+++.+...+..+.++.+++ ..|++ +|=...-.+.+....+.++|++.++
T Consensus 20 Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 20 VFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 4455555555554321 01222 34444444456666665542 12221 1222333466666667777776554
Q ss_pred c
Q 048318 126 T 126 (145)
Q Consensus 126 ~ 126 (145)
.
T Consensus 97 s 97 (222)
T PRK07114 97 T 97 (222)
T ss_pred C
Confidence 3
No 284
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.96 E-value=22 Score=26.32 Aligned_cols=93 Identities=17% Similarity=0.110 Sum_probs=60.5
Q ss_pred eEEEEeCcHHHHHHHHHHHH---HcC--CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDCFIRTIHSMALK---SLG--FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~---~~g--~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.|||-|+|-...-.+...++ +.. ..+. .+.+.+++.+.+.. .+|+|++| +|+..+-.+.++.++ .. .
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a--GaDiImLD-nmspe~l~~av~~~~---~~-~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH--GAQSVLLD-NFTLDMMREAVRVTA---GR-A 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHhhc---CC-e
Confidence 57777777665544444443 221 2343 78899999999875 58999998 333323333333332 22 3
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
++-.++.-+.+.+.+....|+|-+-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 55677888999999999999987754
No 285
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=79.91 E-value=13 Score=27.52 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=49.2
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.-. .+-.+.++.+++..+..+|.+=+. +.++..++++.|+|-++.-.++++++...+..+
T Consensus 179 sd~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~--sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 179 SDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVE--NLDELDQALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred hhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 455555543311 223456677777777777655444 578889999999999999999999999988753
No 286
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=79.84 E-value=23 Score=27.59 Aligned_cols=96 Identities=8% Similarity=0.109 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHHHHc-CCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCC---CCHHHHH---HHHHhcCCcceEEEE
Q 048318 33 DDCFIRTIHSMALKSL-GFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPV---MNGIEAT---REIRSMGIKIKIVGV 104 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~---~~~~~~~---~~l~~~~~~~~iv~l 104 (145)
-|....+.+...|... ||.++.- . ...|+++++.= .-. ....+.+ +.+++.++..+|++.
T Consensus 11 ~N~~dse~~~~~l~~~~G~~~~~~-----------~-~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~ 78 (438)
T TIGR01574 11 MNVRDSEHMAALLTAKEGYALTED-----------A-KEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVC 78 (438)
T ss_pred CcHHHHHHHHHHHHhcCCcEECCC-----------c-ccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 4566778888888888 8877641 1 24799999852 222 2233444 334444556655544
Q ss_pred eCCCCHHHHHHHHH--hCCceeecCCCCHHHHHHHHHHHH
Q 048318 105 TSLNSEAEREAFMQ--AGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 105 ~~~~~~~~~~~~~~--~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+..... ...+... .++|.+ .-+-....+...+....
T Consensus 79 GC~a~~-~~~~~~~~~~~vd~v-~g~~~~~~i~~~~~~~~ 116 (438)
T TIGR01574 79 GCMASH-LGNEIFQRAPYVDFV-FGTRNIHRLPQAIKTPL 116 (438)
T ss_pred Cccccc-cHHHHHhcCCCCcEE-ECCCCHHHHHHHHHHHh
Confidence 333322 2233332 355555 46777777777666543
No 287
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=79.83 E-value=11 Score=25.65 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=13.5
Q ss_pred HHHHHHhCCceee--cCCCCHHHHHH
Q 048318 113 REAFMQAGLDLCH--TKPLSVDKILP 136 (145)
Q Consensus 113 ~~~~~~~g~~~~l--~kP~~~~~L~~ 136 (145)
...+.+.|..-.+ ..|.++.+...
T Consensus 96 i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 96 VKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 3344445655553 46777766654
No 288
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=79.81 E-value=14 Score=24.15 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=44.1
Q ss_pred eEEEEeCcHHHHHHHHHHHH---HcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 27 FALVVDDDCFIRTIHSMALK---SLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~---~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
-++||.||+.++.+|+..-+ +.+-. |+.+.+ .++++.+++ .-+.+-+. -.+|.++.+++.-. +-|+
T Consensus 64 plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t-~~~L~~Lr~-lapgl~l~-----P~sgddLA~rL~l~--HYPv 134 (142)
T PF11072_consen 64 PLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVAT-EAALQRLRQ-LAPGLPLL-----PVSGDDLARRLGLS--HYPV 134 (142)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHH-HcCCCeec-----CCCHHHHHHHhCCC--cccE
Confidence 37999999999999988754 44433 333434 445666655 33555544 56799999998643 4466
Q ss_pred EE
Q 048318 102 VG 103 (145)
Q Consensus 102 v~ 103 (145)
++
T Consensus 135 LI 136 (142)
T PF11072_consen 135 LI 136 (142)
T ss_pred Ee
Confidence 54
No 289
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=79.63 E-value=19 Score=25.56 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=45.0
Q ss_pred ceEEEE------eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVV------DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii------~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.+|++| ++........++.++..|+.+......++..+.+.. .|+|++. +++.+.+++.++.
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~---ad~I~v~----GGnt~~l~~~l~~ 99 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN---AEAIFVG----GGNTFQLLKQLYE 99 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc---CCEEEEC----CccHHHHHHHHHH
Confidence 456665 344455677889999999998888877777766654 6888884 6777777776664
No 290
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=79.63 E-value=18 Score=25.22 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCcc-EEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhC-Cceeec
Q 048318 58 GKEAVDLFRSGAKFD-IVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG-LDLCHT 126 (145)
Q Consensus 58 ~~~al~~~~~~~~~d-lvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g-~~~~l~ 126 (145)
..+..+.+.. ..++ +++.+.+-.+ ...+++++.+++.. ++|++.-++-.+.+....+++.| +++++.
T Consensus 148 ~~e~~~~~~~-~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED-AGVKAIIYTDISRDGTLSGPNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh-cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 3455555554 4567 6777664322 13378888888754 48888888888999999999988 998864
No 291
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.57 E-value=22 Score=26.06 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=56.4
Q ss_pred eEEEEeCcHHHHHHHHHHHH---Hc--CCeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh-cCCcc
Q 048318 27 FALVVDDDCFIRTIHSMALK---SL--GFKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS-MGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~---~~--g~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~~ 99 (145)
.+||-++|-...-.+...++ .. +..+ ..+.+.+|+.+.+.. .+|.|.+|- + +.+.++++.+ ..+++
T Consensus 162 ~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~tleea~eA~~~--gaD~I~LD~-~----~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 162 AFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESLDELRQALAA--GADIVMLDE-L----SLDDMREAVRLTAGRA 234 (277)
T ss_pred cEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHc--CCCEEEECC-C----CHHHHHHHHHHhCCCC
Confidence 46666666444433333332 22 2233 378899999888864 589999972 2 3333444333 22467
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
|+.+ ++.-+.+...+....|+|.+-.
T Consensus 235 ~leA-sGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 235 KLEA-SGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred cEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 7664 4566778888889999988753
No 292
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=79.34 E-value=12 Score=23.13 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=53.8
Q ss_pred eEEEEeCc--HHHHHHHHHHHHHcCCeEEEEcCHHHHHHH-HHcCCCc-c-EEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 27 FALVVDDD--CFIRTIHSMALKSLGFKVEVAENGKEAVDL-FRSGAKF-D-IVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 27 ~iLii~~~--~~~~~~l~~~L~~~g~~v~~~~~~~~al~~-~~~~~~~-d-lvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+|.++..- ......+...|...|..+....+..+.... +.. ..+ | ++++...=...+..+.++.+++. ..++
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~is~sg~~~~~~~~~~~ak~~--g~~v 83 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLEN-LDPDDLVIIISYSGETRELIELLRFAKER--GAPV 83 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGG-CSTTEEEEEEESSSTTHHHHHHHHHHHHT--TSEE
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhccc-ccccceeEeeeccccchhhhhhhHHHHhc--CCeE
Confidence 45555443 344566666677777777766666664443 332 234 3 33444322222345566666654 5788
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHH
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~ 132 (145)
|.+|+..+..... .+|..+.-|....
T Consensus 84 i~iT~~~~~~l~~-----~ad~~l~~~~~~~ 109 (131)
T PF01380_consen 84 ILITSNSESPLAR-----LADIVLYIPTGEE 109 (131)
T ss_dssp EEEESSTTSHHHH-----HSSEEEEEESSCG
T ss_pred EEEeCCCCCchhh-----hCCEEEEecCCCc
Confidence 9999887766543 3455555554443
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.22 E-value=27 Score=26.91 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=57.1
Q ss_pred CceEEEEeCcHHHH---HHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC-CCCCHHH---HHHHHHhcCC
Q 048318 25 RLFALVVDDDCFIR---TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM-PVMNGIE---ATREIRSMGI 97 (145)
Q Consensus 25 ~~~iLii~~~~~~~---~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~-~~~~~~~---~~~~l~~~~~ 97 (145)
+.+|.++.-|.... +.++.+-+..|+.+..+.+..+....+.....+|+||+|.-- ...+... +.+.+....+
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~ 285 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR 285 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC
Confidence 45788887776433 334444445677777777777665555443569999999732 2223322 2222232333
Q ss_pred c-ceEEEEeCCCCHHHHHHHHH----hCCceeec
Q 048318 98 K-IKIVGVTSLNSEAEREAFMQ----AGLDLCHT 126 (145)
Q Consensus 98 ~-~~iv~l~~~~~~~~~~~~~~----~g~~~~l~ 126 (145)
+ -.++++++........+.+. .|.+.++.
T Consensus 286 ~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 286 DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 3 35667777766655554433 34566643
No 294
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=79.12 E-value=15 Score=26.73 Aligned_cols=74 Identities=15% Similarity=0.057 Sum_probs=41.7
Q ss_pred eEEEEeCc------HHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDD------CFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~------~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
+||++... ......+...|.+.|++|.... +.....+.+.. ..||+|.+-......-....+..+. ..+
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~-~~~diih~~~~~~~~~~~~~~~~~~---~~~ 77 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI-INADIVHLHWIHGGFLSIEDLSKLL---DRK 77 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc-ccCCEEEEEccccCccCHHHHHHHH---cCC
Confidence 56666433 3466777788888898887444 33334444444 6799998865333333333333332 245
Q ss_pred eEEEE
Q 048318 100 KIVGV 104 (145)
Q Consensus 100 ~iv~l 104 (145)
|+|+.
T Consensus 78 ~~v~~ 82 (365)
T cd03825 78 PVVWT 82 (365)
T ss_pred CEEEE
Confidence 66543
No 295
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=78.96 E-value=21 Score=25.56 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=48.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc-CCeEEEEc-------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL-GFKVEVAE-------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~-g~~v~~~~-------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
.+.+|.++...+...+.+...|+.. |..+.-+. +.++.++.+.. ..||++++.+..|.+.- ++...+..
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~-s~~dil~VglG~PkQE~--~~~~~~~~ 180 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA-SGAKIVTVAMGSPKQEI--FMRDCRLV 180 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEECCCcHHHH--HHHHHHHh
Confidence 3578999999999999888888653 55544211 22335666766 67999999998886544 35555554
Q ss_pred C
Q 048318 96 G 96 (145)
Q Consensus 96 ~ 96 (145)
.
T Consensus 181 ~ 181 (243)
T PRK03692 181 Y 181 (243)
T ss_pred C
Confidence 3
No 296
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=78.84 E-value=17 Score=24.54 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=55.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEc-------CHHHHHHHHHcCCC--ccEEEEecCCC--CCCHHHHHHHHHhcC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAE-------NGKEAVDLFRSGAK--FDIVFIDKEMP--VMNGIEATREIRSMG 96 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~~~~~~~--~dlvl~d~~~~--~~~~~~~~~~l~~~~ 96 (145)
||+-|.|...+..++..-++.|..|.+.+ ++++.++++.+ .+ |=+|++|..=. ...|-+.++.+-.+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~-a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h- 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQ-APHDPVLVMFDDKGFIGEGPGEQALEYVANH- 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHh-CCCCCEEEEEeCCCCCCCCccHHHHHHHHcC-
Confidence 56777788888888888888898888655 78999999876 34 44777776432 24677777777653
Q ss_pred Cc---ceEEEEeCCCC
Q 048318 97 IK---IKIVGVTSLNS 109 (145)
Q Consensus 97 ~~---~~iv~l~~~~~ 109 (145)
|+ +-+|++++...
T Consensus 81 ~~IeVLG~iAVASnT~ 96 (180)
T PF14097_consen 81 PDIEVLGAIAVASNTH 96 (180)
T ss_pred CCceEEEEEEEEecCC
Confidence 33 35566665543
No 297
>PRK10742 putative methyltransferase; Provisional
Probab=78.77 E-value=22 Score=25.65 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=65.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc------CC----eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-HHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL------GF----KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-GIEATREI 92 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~------g~----~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-~~~~~~~l 92 (145)
+-+|..+|.++.....++..|+.. +. .+. ...+..+.+.... ..||+|++|--.|... .....+.+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~--~~fDVVYlDPMfp~~~ksa~vkk~m 187 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT--PRPQVVYLDPMFPHKQKSALVKKEM 187 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC--CCCcEEEECCCCCCCccccchhhhH
Confidence 446899999999999999999874 21 233 4556666666533 3599999998777643 33344555
Q ss_pred HhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 93 RSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 93 ~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
|-.. . ++-.+..+++....|++..-.-+++|
T Consensus 188 r~~~-~---l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 188 RVFQ-S---LVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred HHHH-H---hcCCCCChHHHHHHHHHhcCceEEEe
Confidence 5321 1 12345567777888888777777777
No 298
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=78.73 E-value=5.1 Score=32.08 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=36.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
+||+||++..+...+...|++.|+. +.........++.+.. ..||.|++.-
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~-~~~d~vIlsg 52 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEA-LNPSHIVISP 52 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHh-cCCCEEEECC
Confidence 3899999999999999999999985 6554322211333333 4689888864
No 299
>PRK07695 transcriptional regulator TenI; Provisional
Probab=78.70 E-value=18 Score=24.72 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=56.4
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee-
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH- 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l- 125 (145)
.+.+.+++.+... ...|.++++.-.+. ..+++.++.+.+.. ++|++++++- +.+...++...|++.+.
T Consensus 101 s~~s~e~a~~a~~--~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav 176 (201)
T PRK07695 101 SVHSLEEAIQAEK--NGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAV 176 (201)
T ss_pred eCCCHHHHHHHHH--cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEE
Confidence 5667777665443 35898887653332 23567788877643 5899877766 77788889999998873
Q ss_pred ----cCCCCHHHHHHHHHHHHh
Q 048318 126 ----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 126 ----~kP~~~~~L~~~i~~~~~ 143 (145)
.+.-++.+....+.+.++
T Consensus 177 ~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 177 MSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred EHHHhcCCCHHHHHHHHHHHHh
Confidence 333456555555555543
No 300
>PLN02522 ATP citrate (pro-S)-lyase
Probab=78.60 E-value=35 Score=27.97 Aligned_cols=113 Identities=11% Similarity=0.094 Sum_probs=75.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcC--CeEE--EE------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLG--FKVE--VA------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG 96 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g--~~v~--~~------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~ 96 (145)
+|=++.........+...+...| +... .- .+..+.++.+.+....++|++=.+....++.++++.+++..
T Consensus 169 ~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~ 248 (608)
T PLN02522 169 SVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQGK 248 (608)
T ss_pred cEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHHhc
Confidence 47888888888888887777654 3322 22 35778888877644567888777767778899999998755
Q ss_pred CcceEEEEeCCCCH------------------------HHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 97 IKIKIVGVTSLNSE------------------------AEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 97 ~~~~iv~l~~~~~~------------------------~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
...|||++-...+. .....+.++|+ ..+-++++|...++++++
T Consensus 249 ~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv----~vv~s~~El~~~~~~~~~ 315 (608)
T PLN02522 249 VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA----IVPTSFEALEAAIKETFE 315 (608)
T ss_pred CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC----eEeCCHHHHHHHHHHHHH
Confidence 66788887433322 12223334444 346788899888887764
No 301
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=78.58 E-value=24 Score=25.91 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=49.9
Q ss_pred eEEEEeCc-H---HHHHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVVDDD-C---FIRTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii~~~-~---~~~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
++.++.++ + .....++..+++.|+.++. + .+....+..+.. ..||+|++... ..+...+++.+++.
T Consensus 134 ~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~-~~pd~v~~~~~--~~~~~~~~~~~~~~ 210 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAA-SGADAVLSTLV--GQDAVAFNRQFAAA 210 (333)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHH-cCCCEEEEeCC--CCchHHHHHHHHHc
Confidence 45444433 2 3346677778888888752 2 244455666666 57999998653 33556788888876
Q ss_pred CCcceEEEEeCCCCHH
Q 048318 96 GIKIKIVGVTSLNSEA 111 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~ 111 (145)
....+++..+....+.
T Consensus 211 G~~~~~~~~~~~~~~~ 226 (333)
T cd06358 211 GLRDRILRLSPLMDEN 226 (333)
T ss_pred CCCccCceeecccCHH
Confidence 6665665444433433
No 302
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.50 E-value=14 Score=27.03 Aligned_cols=69 Identities=20% Similarity=0.141 Sum_probs=49.1
Q ss_pred ccEEEEecCCC--CCCHHHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMP--VMNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~--~~~~~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++..+.- -.+-.+.++.+|...|+ .+|. ..-++.++...+.++|+|-+..-.++++++.+.+..+
T Consensus 152 ~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~--VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 152 DDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIE--IECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred hhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEE--EEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45555554321 12335677888877664 5554 4555888899999999999988899999999999753
No 303
>PF13941 MutL: MutL protein
Probab=78.36 E-value=31 Score=27.21 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=62.6
Q ss_pred CceEEEEeCcHHHH-HHHHHHHHHcCCeEE---EEcCHHHHHHHHHcCCCccEEEEecCCCCCC---HHHHHHHHHhcCC
Q 048318 25 RLFALVVDDDCFIR-TIHSMALKSLGFKVE---VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN---GIEATREIRSMGI 97 (145)
Q Consensus 25 ~~~iLii~~~~~~~-~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~---~~~~~~~l~~~~~ 97 (145)
.++..++.--+... +..+..-...|-.|. ...-.+.-++.+.+ .+||+|++-=.-.+++ ..+..+.+.+...
T Consensus 76 GLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~-~~PDiILLaGGtDgG~~~~il~nA~~La~~~~ 154 (457)
T PF13941_consen 76 GLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE-IRPDIILLAGGTDGGNKEVILHNAEMLAEANL 154 (457)
T ss_pred cceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc-cCCCEEEEeCCccCCchHHHHHHHHHHHhCCC
Confidence 44555555444443 333333333454433 34445556777776 6899999854444443 3456667777677
Q ss_pred cceEEEEeCCCCHHHHHHHHH-hCCceeecC
Q 048318 98 KIKIVGVTSLNSEAEREAFMQ-AGLDLCHTK 127 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~~~-~g~~~~l~k 127 (145)
.+|||+-.+......+.+.+. .|.+-++.-
T Consensus 155 ~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~ 185 (457)
T PF13941_consen 155 RIPVIYAGNKAAQDEVEEILEKAGKEVVITE 185 (457)
T ss_pred CCcEEEECCHHHHHHHHHHHHhCCCCEEEeC
Confidence 889988777777778888887 666666544
No 304
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.21 E-value=20 Score=24.97 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=51.9
Q ss_pred HHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 43 MALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 43 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
..++..+..+. .+.+.+++.... + ...|.+.++-.-.+ ...+++++++++.. ++|+++..+-.+.+...
T Consensus 96 ~~~~~~~i~~i~~v~~~~~~~~~~-~-~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~ 172 (236)
T cd04730 96 ERLKAAGIKVIPTVTSVEEARKAE-A-AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIA 172 (236)
T ss_pred HHHHHcCCEEEEeCCCHHHHHHHH-H-cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHH
Confidence 34444454544 444556555443 3 35788887542111 24567888887643 67888877777778888
Q ss_pred HHHHhCCceeecC
Q 048318 115 AFMQAGLDLCHTK 127 (145)
Q Consensus 115 ~~~~~g~~~~l~k 127 (145)
+++..|++.+..-
T Consensus 173 ~~l~~GadgV~vg 185 (236)
T cd04730 173 AALALGADGVQMG 185 (236)
T ss_pred HHHHcCCcEEEEc
Confidence 8899999988643
No 305
>PRK12704 phosphodiesterase; Provisional
Probab=77.75 E-value=4.6 Score=32.25 Aligned_cols=44 Identities=5% Similarity=0.073 Sum_probs=35.2
Q ss_pred eEEEEeCCCCHH--HHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 100 KIVGVTSLNSEA--EREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 100 ~iv~l~~~~~~~--~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+|++|+..... ....++..++.|+..||+..+++...++.-++
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 345567766554 78888999999999999999999999987654
No 306
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=77.60 E-value=22 Score=24.96 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHcCCe--EEEEcCHHHHHHHHHcCCCccEE--EEec-CCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHHH
Q 048318 44 ALKSLGFK--VEVAENGKEAVDLFRSGAKFDIV--FIDK-EMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 44 ~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlv--l~d~-~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~~ 114 (145)
.|+..|.. ++.+-+..+++-....+ .+.| +++- .-.+.+|.++++.+++ ....++| +.++..+.....
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG--a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkI-laAS~r~~~~v~ 172 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG--ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEV-IAASVRHPRHVL 172 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC--CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEE-EEeccCCHHHHH
Confidence 45666755 44566888887776653 4433 3331 2234688888887765 3456775 467788888999
Q ss_pred HHHHhCCceeecCC
Q 048318 115 AFMQAGLDLCHTKP 128 (145)
Q Consensus 115 ~~~~~g~~~~l~kP 128 (145)
++...|++.+-..|
T Consensus 173 ~~~~~G~d~vTip~ 186 (213)
T TIGR00875 173 EAALIGADIATMPL 186 (213)
T ss_pred HHHHcCCCEEEcCH
Confidence 99999999884433
No 307
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=77.60 E-value=15 Score=30.70 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=37.8
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEe
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d 77 (145)
....+|+|||........+.+.|+..|+.+........ ...+.. ..||.||+.
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~-~~~~~~-~~~DgLILs 566 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA-EAAFDE-RRPDLVVLS 566 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC-hhhhhh-cCCCEEEEc
Confidence 35678999999988889999999999998876653321 122223 358988883
No 308
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=77.56 E-value=4.6 Score=25.13 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=38.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHHHH
Q 048318 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLMEDL 141 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~ 141 (145)
+...|++--. +| ...+.+.+..|.+||++++....- ...-.+..|+..++.++.. .+++.......
T Consensus 16 ~ak~Ivv~T~----sG-~ta~~isk~RP~~pIiavt~~~~~-~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~ 83 (117)
T PF02887_consen 16 NAKAIVVFTE----SG-RTARLISKYRPKVPIIAVTPNESV-ARQLSLYWGVYPVLIEEFDKDTEELIAEALEY 83 (117)
T ss_dssp TESEEEEE-S----SS-HHHHHHHHT-TSSEEEEEESSHHH-HHHGGGSTTEEEEECSSHSHSHHHHHHHHHHH
T ss_pred CCCEEEEECC----Cc-hHHHHHHhhCCCCeEEEEcCcHHH-HhhhhcccceEEEEeccccccHHHHHHHHHHH
Confidence 3556666432 23 233455556678999998875443 3444477899997777544 55555554433
No 309
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=77.45 E-value=14 Score=22.81 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=43.4
Q ss_pred eEEEEeCcHHHHHHHHHHHH---HcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 27 FALVVDDDCFIRTIHSMALK---SLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~---~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
-+++|.||+.++.+++..-. +.+-. |+.+.+ .+++..++. .-|.+-+ ...+|.++.+++.-+ +-|+
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t-~~~l~~Lr~-lapgl~l-----~P~sgddLa~rL~l~--hYPv 96 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVET-AAALQRLRA-LAPGLPL-----LPVSGDDLAERLGLR--HYPV 96 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHH-HcCCCcc-----cCCCHHHHHHHhCCC--cccE
Confidence 36999999999999988754 44422 334444 445555654 3345444 356899999988643 4466
Q ss_pred EE
Q 048318 102 VG 103 (145)
Q Consensus 102 v~ 103 (145)
++
T Consensus 97 Li 98 (105)
T TIGR03765 97 LI 98 (105)
T ss_pred EE
Confidence 54
No 310
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=77.05 E-value=18 Score=26.46 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.+.++.+|+..+..+|. ..-.+.+...++.+.|+|-++.-.++++++...++.+
T Consensus 176 ~~av~~~r~~~~~~kIe--VEv~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l 229 (277)
T TIGR01334 176 GGAIGRLKQTAPERKIT--VEADTIEQALTVLQASPDILQLDKFTPQQLHHLHERL 229 (277)
T ss_pred HHHHHHHHHhCCCCCEE--EECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 35677777766666654 3445888899999999999999999999999999876
No 311
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=77.04 E-value=12 Score=25.15 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=33.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEe
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d 77 (145)
||++|........+...|++.|+.+............... ..+|.+++-
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~-~~~dgvil~ 49 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL-LNPDAIVIS 49 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh-cCCCEEEEC
Confidence 5889999999999999999999887755433222111122 348987763
No 312
>PRK01362 putative translaldolase; Provisional
Probab=77.02 E-value=23 Score=24.89 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=51.6
Q ss_pred HHHHcCCeE--EEEcCHHHHHHHHHcCCCccEEEEe-cCCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHHHHH
Q 048318 44 ALKSLGFKV--EVAENGKEAVDLFRSGAKFDIVFID-KEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 44 ~L~~~g~~v--~~~~~~~~al~~~~~~~~~dlvl~d-~~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~~~~ 116 (145)
.|+..|+.+ +.+-+..+++.....+..|=-.+++ ..-.+.+|.++++.+++ ...++.| +.++..+.....++
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tki-laAS~r~~~~v~~~ 174 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEI-IAASVRHPMHVLEA 174 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEE-EEeecCCHHHHHHH
Confidence 456667554 4566888887766553222223333 22335688888887765 2335554 46778889999999
Q ss_pred HHhCCceee
Q 048318 117 MQAGLDLCH 125 (145)
Q Consensus 117 ~~~g~~~~l 125 (145)
...|++.+-
T Consensus 175 ~~~G~d~iT 183 (214)
T PRK01362 175 ALAGADIAT 183 (214)
T ss_pred HHcCCCEEe
Confidence 999999663
No 313
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=76.89 E-value=23 Score=24.87 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHcCCCccEEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 56 ENGKEAVDLFRSGAKFDIVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~dlvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..+..+.+.. ....+++.|..-.+ ...+++++.+.+. ..+|+++-..-.+.+....+...|+++.+.
T Consensus 141 ~~~~~~~~~~~~-~g~~ii~tdI~~dGt~~G~d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 141 ESLEEVRDFLNS-FDYGLIVLDIHSVGTMKGPNLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred ccHHHHHHHHHh-cCCEEEEEECCccccCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 344555555443 23468888886543 2357888888875 367888777778888888888899998864
No 314
>PRK03612 spermidine synthase; Provisional
Probab=76.84 E-value=37 Score=27.20 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=44.0
Q ss_pred ceEEEEeCcHHHHHHHHH--HHHHc---C---CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCH------HHHHH
Q 048318 26 LFALVVDDDCFIRTIHSM--ALKSL---G---FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG------IEATR 90 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~--~L~~~---g---~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~------~~~~~ 90 (145)
.+|..+|-|+...+..++ .+... . -.+. ...|..+.++... ..||+|++|...+...+ .++.+
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~--~~fDvIi~D~~~~~~~~~~~L~t~ef~~ 399 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA--EKFDVIIVDLPDPSNPALGKLYSVEFYR 399 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC--CCCCEEEEeCCCCCCcchhccchHHHHH
Confidence 578999999999999887 44321 1 1343 4556666555432 46999999976554322 35677
Q ss_pred HHHhc
Q 048318 91 EIRSM 95 (145)
Q Consensus 91 ~l~~~ 95 (145)
.+++.
T Consensus 400 ~~~~~ 404 (521)
T PRK03612 400 LLKRR 404 (521)
T ss_pred HHHHh
Confidence 76654
No 315
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=76.59 E-value=28 Score=26.37 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCeEEE--Ec-----CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 40 IHSMALKSLGFKVEV--AE-----NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 40 ~l~~~L~~~g~~v~~--~~-----~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.+.+.++..|..+.. .. +....+..+.. ..++.|+++..- .....++++.++.....+
T Consensus 142 ~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~-~~~~~iil~~~~--~~~~~il~qa~~~gm~~~ 206 (371)
T cd06388 142 AIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDR-RQEKKFVIDCEI--ERLQNILEQIVSVGKHVK 206 (371)
T ss_pred HHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcc-cccEEEEEECCH--HHHHHHHHHHHhcCcccc
Confidence 344444455766542 21 34445555555 579999999854 346788888888655544
No 316
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=76.53 E-value=35 Score=26.78 Aligned_cols=88 Identities=10% Similarity=0.169 Sum_probs=61.1
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC--------CCHHHHHHHHHhcC--------CcceEEEEeCCCCHHHHHHHH
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV--------MNGIEATREIRSMG--------IKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~--------~~~~~~~~~l~~~~--------~~~~iv~l~~~~~~~~~~~~~ 117 (145)
.+.+.+|+.+... ..+|.|.++.-.+. .-|++.++.+++.. ..+|++++++- +.+.....+
T Consensus 306 StHs~eEl~~A~~--~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl 382 (437)
T PRK12290 306 STHGYYELLRIVQ--IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVW 382 (437)
T ss_pred ecCCHHHHHHHhh--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHH
Confidence 5667888766654 35899999865543 14777777766533 26899988765 555677888
Q ss_pred HhCCcee-----ecCCCCHHHHHHHHHHHHhc
Q 048318 118 QAGLDLC-----HTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 118 ~~g~~~~-----l~kP~~~~~L~~~i~~~~~~ 144 (145)
+.|++++ +...-++.+-...+.+.+..
T Consensus 383 ~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 383 QCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred HcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 9999887 34556677777777776654
No 317
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.51 E-value=33 Score=26.58 Aligned_cols=102 Identities=15% Similarity=0.048 Sum_probs=54.9
Q ss_pred CceEEEEeCcHHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHHHc---CCCccEEEEecCCCCCCHHHHHHHHHh----
Q 048318 25 RLFALVVDDDCFI---RTIHSMALKSLGFKVEVAENGKEAVDLFRS---GAKFDIVFIDKEMPVMNGIEATREIRS---- 94 (145)
Q Consensus 25 ~~~iLii~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~~~---~~~~dlvl~d~~~~~~~~~~~~~~l~~---- 94 (145)
+.+|.+++-|+.. .+.++.+-+..|+.+..+.+..+..+.+.. ...+|+||+|.-=-.....+.+..++.
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 4578888777653 456666666677766666777665544432 135899999973211122333333332
Q ss_pred cCCcceEEEEeCCCCHHHHHHHH----HhCCceeec
Q 048318 95 MGIKIKIVGVTSLNSEAEREAFM----QAGLDLCHT 126 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~~~~~~----~~g~~~~l~ 126 (145)
..++..++++++........... ..+.+.++.
T Consensus 314 ~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 314 VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 23344344555544444444433 245566643
No 318
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=76.48 E-value=13 Score=25.74 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=35.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
++|.|||-..-....+.++|+..|+ ++.+..+.++. ..+|.+|+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l-------~~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV-------AAADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh-------cCCCEEEE
Confidence 5788999888788889999999998 77777776652 24898887
No 319
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=76.47 E-value=20 Score=24.07 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=44.7
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHH-HcCCCccEEEEecCCCCCC-HHHHHHHHHhc-CCcceEEEEe
Q 048318 29 LVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF-RSGAKFDIVFIDKEMPVMN-GIEATREIRSM-GIKIKIVGVT 105 (145)
Q Consensus 29 Lii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-~~~~~~dlvl~d~~~~~~~-~~~~~~~l~~~-~~~~~iv~l~ 105 (145)
||+|........+...++..|..+....-..+..... .. ..+|.+++-=...... -....+.++.. ....|++-++
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDL-DDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHT-TTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhh-cCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 6899999999999999999997766544222211111 23 4688777764433222 22233333331 2367887664
No 320
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.42 E-value=16 Score=26.66 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=46.9
Q ss_pred ccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 71 ~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
+|.|++-.+.-.. +-.+.++..|+..++..+|-++. .+.++...+.+.|+|.+...+++++.+...++.
T Consensus 158 ~d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv-~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~ 228 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVET-ETEEQVREAVAAGADIIMFDNRTPDEIREFVKL 228 (277)
T ss_pred CceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 6777776654221 23455667776655444555555 456678888999999998889999888877764
No 321
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=76.19 E-value=24 Score=24.66 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=42.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv~ 103 (145)
++++|.....-+...+...|...|+.|..+....+.+..+......++.++..++.+.+.. ++++.+.+....+-+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3578888888888888888888898887544333333333221122444444444444333 34555544333333343
No 322
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=76.06 E-value=15 Score=25.21 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=33.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
|+|+|||-..-....+.+.|+..|+++..+.+.++ + ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~---~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I---LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h---CCCCEEEE
Confidence 46899997777777788899999999998887753 2 23787776
No 323
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.92 E-value=25 Score=24.89 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCC-ccEEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAK-FDIVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~-~dlvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+.++.+.. .. -.+++.|.+..+ ...+++++.+.+. .++|+++-..-.+.+....+++.|++..+.
T Consensus 151 ~~~~~~~~~-~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSD-IPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHH-cCCCEEEEecccCcCCCCccCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455555544 23 368888886543 2346778888765 478998888888999999999999999875
No 324
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=75.82 E-value=25 Score=24.82 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCC
Q 048318 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP 128 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP 128 (145)
..||.|+.---.|...|-.-.+.+-+. .+.|.|++++........+..+.|...++.|+
T Consensus 59 ~~pDfvi~isPNpaaPGP~kARE~l~~-s~~PaiiigDaPg~~vkdeleeqGlGYIivk~ 117 (277)
T COG1927 59 FNPDFVIYISPNPAAPGPKKAREILSD-SDVPAIIIGDAPGLKVKDELEEQGLGYIIVKA 117 (277)
T ss_pred cCCCEEEEeCCCCCCCCchHHHHHHhh-cCCCEEEecCCccchhHHHHHhcCCeEEEecC
Confidence 679988877666677777666666542 26788888887755555555566666556664
No 325
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.70 E-value=29 Score=25.44 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCC
Q 048318 37 IRTIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNS 109 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~ 109 (145)
....++..+++.|..+.. ..+....+..+.. ..||.|++-.. ......+++.+++.....|+++.....+
T Consensus 149 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~-~~pdaV~~~~~--~~~a~~~~~~~~~~G~~~~~~~~~~~~~ 225 (341)
T cd06341 149 AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA-AGADAIITVLD--AAVCASVLKAVRAAGLTPKVVLSGTCYD 225 (341)
T ss_pred HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh-cCCCEEEEecC--hHHHHHHHHHHHHcCCCCCEEEecCCCC
Confidence 345566777777866432 1356566666665 57999987532 2367889999998877777766554444
Q ss_pred HHHH
Q 048318 110 EAER 113 (145)
Q Consensus 110 ~~~~ 113 (145)
....
T Consensus 226 ~~~~ 229 (341)
T cd06341 226 PALL 229 (341)
T ss_pred HHHH
Confidence 4433
No 326
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=75.66 E-value=34 Score=26.49 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=57.4
Q ss_pred eEEEEeC-cHHHHHHHHHHHHHcCCeEEEEc--CHHHHHHHHHcCCCccEEEEec-CCCCCC---HHHHHHHHHhcCCcc
Q 048318 27 FALVVDD-DCFIRTIHSMALKSLGFKVEVAE--NGKEAVDLFRSGAKFDIVFIDK-EMPVMN---GIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~-~~~~~~~l~~~L~~~g~~v~~~~--~~~~al~~~~~~~~~dlvl~d~-~~~~~~---~~~~~~~l~~~~~~~ 99 (145)
+|++.++ -.-.+..+...++++|+++..+. +..+..+.+.. .++++|+++. ..|-+. -..+.+..++..
T Consensus 104 ~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g--- 179 (396)
T COG0626 104 HVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG--- 179 (396)
T ss_pred EEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCCCcccccccHHHHHHHHHhcC---
Confidence 5666666 44456677777888899988665 34445555543 3589999985 334333 222333333332
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.++++-+.-.....++.+..|||-++
T Consensus 180 ~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 180 ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred CEEEEECCcccccccChhhcCCCEEE
Confidence 45556555566667777888877654
No 327
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=75.63 E-value=26 Score=24.80 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=41.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc---CCCccEEEEecC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS---GAKFDIVFIDKE 79 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~---~~~~dlvl~d~~ 79 (145)
-++.-+|-++...+..+..++..|+. +. ...+..+.+..+.. ...||+|++|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 47899999999999999999988864 44 55577777766532 146999999975
No 328
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=75.54 E-value=20 Score=25.09 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHhcCCcceEEEEeCC------CCHHHHHHHHHhCCceeecCCCCHHHHH
Q 048318 89 TREIRSMGIKIKIVGVTSL------NSEAEREAFMQAGLDLCHTKPLSVDKIL 135 (145)
Q Consensus 89 ~~~l~~~~~~~~iv~l~~~------~~~~~~~~~~~~g~~~~l~kP~~~~~L~ 135 (145)
+++.|...-.+||++++-. .....++.+.++|+++|+.--+.++|-.
T Consensus 86 vk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~ 138 (268)
T KOG4175|consen 86 VKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAE 138 (268)
T ss_pred HHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHH
Confidence 3333333446899987643 5677789999999999988766665543
No 329
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=75.42 E-value=12 Score=31.51 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=49.6
Q ss_pred CccEEEEec-CCCCCCHHH-HHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGIE-ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~-~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+.++|+|- ++-....++ +++.|.+-..++.+|+.+... ..+...+.+-+.-|-.++++.+++...+.++++
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~--~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP--QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh--hhccchhhhheEEEecCCcCHHHHHHHHHHHHH
Confidence 478899884 443334444 555555545577777666543 334566778888888999999999999988764
No 330
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=75.30 E-value=22 Score=23.83 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCHHHHHH----HHHcCCCccEEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 35 CFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRSGAKFDIVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~----~~~~~~~~dlvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
.+....+-......++.+...-..++.++ .+.. ..|++-++....+. .+.-++++.|+...+++-+|.+..+
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~-~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRR-RYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH-HCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 34444455566667888886665555555 4444 56899999876653 3456788888888888777767666
Q ss_pred CCHHHHHHHHH
Q 048318 108 NSEAEREAFMQ 118 (145)
Q Consensus 108 ~~~~~~~~~~~ 118 (145)
..+........
T Consensus 113 kQE~~~~~~~~ 123 (172)
T PF03808_consen 113 KQERWIARHRQ 123 (172)
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 331
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=75.25 E-value=30 Score=25.36 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=58.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE--EEc---CHHHHHHHHHcCCCccEEEEecCC---------CCC----CHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE--VAE---NGKEAVDLFRSGAKFDIVFIDKEM---------PVM----NGI 86 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~--~~~---~~~~al~~~~~~~~~dlvl~d~~~---------~~~----~~~ 86 (145)
+=+||-+|.|+.......+.-++.|..+. ++. ..+....++.. ..||++++==+- .+. +.-
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~-~~PDIlViTGHD~~~K~~~d~~dl~~YrnSk 182 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE-VRPDILVITGHDAYSKNKGNYMDLNAYRHSK 182 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH-hCCCEEEEeCchhhhcCCCChhhhhhhhhhH
Confidence 44799999999999988888888776554 333 44445566666 689987763211 111 233
Q ss_pred HHHHHHHh---cCCcc-eEEEEeCCCCHHHHHHHHHhCCce
Q 048318 87 EATREIRS---MGIKI-KIVGVTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 87 ~~~~~l~~---~~~~~-~iv~l~~~~~~~~~~~~~~~g~~~ 123 (145)
.|++.++. ..|+. -+|++++-+ .+.-+..+++||+.
T Consensus 183 yFVeaVk~aR~y~~~~D~LVIFAGAC-QS~yEall~AGANF 222 (283)
T TIGR02855 183 YFVETVREARKYVPSLDQLVIFAGAC-QSHFESLIRAGANF 222 (283)
T ss_pred HHHHHHHHHHhcCCCcccEEEEcchh-HHHHHHHHHcCccc
Confidence 44444443 23322 344455444 44566788999864
No 332
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=75.19 E-value=19 Score=26.23 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=27.6
Q ss_pred ceEEEEeCcHHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 26 LFALVVDDDCFI---RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
.+|.+++-|+.. .+.+...-+..|+.+..+.+..+..+.+..-..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCCCEEEEeC
Confidence 466666666532 33333333344555555555555444443323467777774
No 333
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=75.17 E-value=34 Score=26.04 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=39.9
Q ss_pred ceEEEEeCcHHH-----HHHHHHHHHHcCCeEEEEc---------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHH
Q 048318 26 LFALVVDDDCFI-----RTIHSMALKSLGFKVEVAE---------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATRE 91 (145)
Q Consensus 26 ~~iLii~~~~~~-----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~ 91 (145)
.+++|+.+.... ...+...|+..|+.+.++. +..++++..+. ..+|+||- +.+++..+..|.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIa---iGGGS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE-EKVDFILA---VGGGSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH-cCCCEEEE---eCChHHHHHHHH
Confidence 578888765333 3667788888787765543 34455666666 57998773 235566666665
Q ss_pred H
Q 048318 92 I 92 (145)
Q Consensus 92 l 92 (145)
+
T Consensus 105 i 105 (382)
T cd08187 105 I 105 (382)
T ss_pred H
Confidence 4
No 334
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.05 E-value=26 Score=24.70 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=45.4
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..++++.+... .-.+++.|++-.+ +.|.+ .+.+..++.|+++-..-.+.+....+...|+++.+.
T Consensus 144 ~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHH-hCEEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 344555555542 3368888887654 46766 333333578999888888988998998999998753
No 335
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=74.77 E-value=38 Score=26.34 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=55.8
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec----CCCCCCHHHHHHHHHh--cCCcceEEEEe
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK----EMPVMNGIEATREIRS--MGIKIKIVGVT 105 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~----~~~~~~~~~~~~~l~~--~~~~~~iv~l~ 105 (145)
--|....+.+...|...||..+.. . ...|+|+++. ...+....+.++.+.. +.+..++| ++
T Consensus 11 ~~N~~ds~~~~~~l~~~g~~~~~~-----------~-~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vv-v~ 77 (434)
T PRK14330 11 QMNENDSETMAGLLKKEGFEPASN-----------P-EEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIG-VA 77 (434)
T ss_pred CCcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEE-EE
Confidence 346667788888898888876531 1 2479999973 2222345666666621 12355554 44
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+........++.+. ..+++..+-....+...+..+.
T Consensus 78 Gc~a~~~~ee~~~~-~~d~vvg~~~~~~~~~~l~~~~ 113 (434)
T PRK14330 78 GCVAEKEREKLLKR-GADFVIGTRAVPKVTEAVKRAL 113 (434)
T ss_pred CccccCchhhHHhc-CCcEEEcCCCHHHHHHHHHHHh
Confidence 44433334445555 4556666666666665555443
No 336
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=74.59 E-value=31 Score=25.28 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=49.9
Q ss_pred EEcCHHHHHHHHHcCCCccEEEE--ecCCCC-----CCHHHHHHHHHhcCCcceEEEEeCCC-CHHHHHHHHHhCCcee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFI--DKEMPV-----MNGIEATREIRSMGIKIKIVGVTSLN-SEAEREAFMQAGLDLC 124 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~--d~~~~~-----~~~~~~~~~l~~~~~~~~iv~l~~~~-~~~~~~~~~~~g~~~~ 124 (145)
.+.+.+++.+.... ...|.+-+ ....+. .=+++.++.+++.. ++|+|+.+++. +.+....+.+.|++.+
T Consensus 151 s~t~~eea~~f~~~-tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~ki 227 (281)
T PRK06806 151 LLTSTTEAKRFAEE-TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKI 227 (281)
T ss_pred eeCCHHHHHHHHHh-hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 36788888888754 35788887 332221 23788899998754 68999887544 7777888999999887
No 337
>PRK04457 spermidine synthase; Provisional
Probab=74.52 E-value=29 Score=24.97 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=46.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcC--CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLG--FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g--~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~ 95 (145)
..+|..+|-++...+..+..+...+ -.+. +..|+.+.+.... ..||+|++|..-.. ....++++.+++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 4578999999999999998876432 2344 4567777665432 46999999963222 1235777777763
No 338
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=74.46 E-value=30 Score=25.01 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec-CCCCCC-HHHHHHHHHhcC-CcceEEEEeCCCCHHHHH
Q 048318 39 TIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK-EMPVMN-GIEATREIRSMG-IKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~-~~~~~~-~~~~~~~l~~~~-~~~~iv~l~~~~~~~~~~ 114 (145)
..+...-...|.++. .+.+.+|+...+.. .+++|=++- ++.+.. ..+....+.... .+..+|.-++-.+.+...
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~--~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~ 225 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA--GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDAR 225 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT--T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc--CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHH
Confidence 455555567898865 89999998887754 467776663 333322 233444444432 355566666677899999
Q ss_pred HHHHhCCceeecC
Q 048318 115 AFMQAGLDLCHTK 127 (145)
Q Consensus 115 ~~~~~g~~~~l~k 127 (145)
.....|++++++.
T Consensus 226 ~l~~~G~davLVG 238 (254)
T PF00218_consen 226 RLARAGADAVLVG 238 (254)
T ss_dssp HHCTTT-SEEEES
T ss_pred HHHHCCCCEEEEC
Confidence 9999999999854
No 339
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=74.42 E-value=9 Score=26.72 Aligned_cols=79 Identities=25% Similarity=0.253 Sum_probs=45.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecC--CCCCCH--HHHHHHHHhcCCcce
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKE--MPVMNG--IEATREIRSMGIKIK 100 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~--~~~~~~--~~~~~~l~~~~~~~~ 100 (145)
++|++++........+...|+..|+.+............... ...||.+++-=. .+...+ ..+++.+.. ...|
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~--~~~P 78 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA--AGTP 78 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh--CCCC
Confidence 468999999988888999999999887755533211111110 124898877421 122122 233443332 2577
Q ss_pred EEEEeC
Q 048318 101 IVGVTS 106 (145)
Q Consensus 101 iv~l~~ 106 (145)
++-++-
T Consensus 79 iLGIC~ 84 (214)
T PRK07765 79 LLGVCL 84 (214)
T ss_pred EEEEcc
Confidence 766654
No 340
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=74.36 E-value=29 Score=24.90 Aligned_cols=66 Identities=9% Similarity=0.252 Sum_probs=42.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 71 FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 71 ~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.|++++-....+.-+..+++.+.. .+|+|. +.... ..+....|..+++.+|.+.+++...+..+++
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a~---G~Pvi~-~~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALAA---GVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHHC---CCCEEE-CCCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 477765433233445556666553 567764 33332 3344566778999999999999999998875
No 341
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=74.33 E-value=37 Score=26.02 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=50.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
..|..+|-++...+.++.-++.++.. +. ...+....+... . ..||+|++|- .+ ....++...-+....-.++.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~-~~fDvIdlDP--fG-s~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-N-RKFHVIDIDP--FG-TPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-C-CCCCEEEeCC--CC-CcHHHHHHHHHhcccCCEEE
Confidence 46899999999999999999877644 33 333444444332 2 3599999987 33 33355544433222335667
Q ss_pred EeCCCCHHH
Q 048318 104 VTSLNSEAE 112 (145)
Q Consensus 104 l~~~~~~~~ 112 (145)
+|+.+....
T Consensus 145 vTaTD~~~L 153 (374)
T TIGR00308 145 VTATDTSAL 153 (374)
T ss_pred EEecccHHh
Confidence 776654443
No 342
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=74.32 E-value=29 Score=27.23 Aligned_cols=91 Identities=8% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCeEE-E-E--cCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCC
Q 048318 35 CFIRTIHSMALKSLGFKVE-V-A--ENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNS 109 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~-~-~--~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~ 109 (145)
|.-...+...|+. ..+. . + -+.++.++.. ..||+|.+...-+.. ...++++.+|+..|+++||+-+...
T Consensus 34 Pl~L~ylAa~l~~--~~iiD~~~~~~~~~~~~~~~---~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~- 107 (472)
T TIGR03471 34 PTWLAQPAAMIPG--SRLVDAPPHGVTIDDTLAIA---KDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHV- 107 (472)
T ss_pred ChHHHHHHHhccC--ceEEeCCcccCCHHHHHHHh---cCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCc-
Confidence 4455666666652 2222 1 1 1334444432 358999998655543 5678889999988888877544333
Q ss_pred HHHHHHHHH-hCCceeecCCCCH
Q 048318 110 EAEREAFMQ-AGLDLCHTKPLSV 131 (145)
Q Consensus 110 ~~~~~~~~~-~g~~~~l~kP~~~ 131 (145)
.....+++. ...-||++.--..
T Consensus 108 t~~pe~~l~~~~~vD~Vv~GEgE 130 (472)
T TIGR03471 108 AVLPEKTLKQGPAIDFVCRREFD 130 (472)
T ss_pred ccCHHHHHhcCCCeeEEEeCchH
Confidence 333334444 3345566654333
No 343
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=74.32 E-value=40 Score=26.39 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=59.9
Q ss_pred CceEEEEeCc---HHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 25 RLFALVVDDD---CFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 25 ~~~iLii~~~---~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
+.+.+|+.+. +...+.++...+..|. .|.... ..+..+.+. ..|++++-- ..+.-+.-+++.+.. .+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~---~aDv~vlpS-~~Eg~p~~vlEAma~---G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP---KLDVLVLTS-ISEGQPLVILEAMAA---GI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH---hCCEEEeCc-hhhcCChHHHHHHHc---CC
Confidence 4455666543 3445556666655553 233222 233333332 257776643 233345556665553 56
Q ss_pred eEEEEeCCCCHHHHHHHHHh------CCceeecCCCCHHHHHHHHHHHHh
Q 048318 100 KIVGVTSLNSEAEREAFMQA------GLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~------g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|+|. ++..... +.... |..+++..|-+.+++...+.++++
T Consensus 396 PVVa-td~g~~~---elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 396 PVVA-TDVGSCR---ELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CEEE-CCCCChH---HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 7765 4433322 33333 678899999999999999988875
No 344
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=74.07 E-value=36 Score=25.81 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=57.9
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee-
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH- 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l- 125 (145)
.+.+.+++...... .+|.|.+..-.+. .-|++.++.+.+.. .+|++++++-. .+........|++++-
T Consensus 246 S~Hs~~e~~~A~~~--GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~AiGGI~-~~ni~~l~~~Ga~gVAv 321 (347)
T PRK02615 246 STTNPEEMAKAIAE--GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAIGGID-KSNIPEVLQAGAKRVAV 321 (347)
T ss_pred ecCCHHHHHHHHHc--CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCcEEEE
Confidence 56678887766654 5899998765543 24678888887643 58998876654 6667788899988873
Q ss_pred ----cCCCCHHHHHHHHHHHHh
Q 048318 126 ----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 126 ----~kP~~~~~L~~~i~~~~~ 143 (145)
.+.-++.+....+...++
T Consensus 322 isaI~~a~dp~~~~~~l~~~l~ 343 (347)
T PRK02615 322 VRAIMGAEDPKQATQELLKQLS 343 (347)
T ss_pred eHHHhCCCCHHHHHHHHHHHHh
Confidence 334455555555555443
No 345
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=73.84 E-value=15 Score=26.66 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=44.9
Q ss_pred ccEEEEecCCCC-CCH-HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV-MNG-IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~-~~~-~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.+++-.+.-. ..+ ...++.+|+..+...+|-++.. +.++...+.+.|+|.+..-|++++++...+..+
T Consensus 152 ~d~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~-s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 152 SDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVE-TLEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred cceeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEEC-CHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 455555443221 112 3456777776553334444443 457788889999999989999999988887643
No 346
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.59 E-value=29 Score=24.43 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=56.0
Q ss_pred EcCHHHHHHHHHcCCCccEEEEecCCCC------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee----
Q 048318 55 AENGKEAVDLFRSGAKFDIVFIDKEMPV------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC---- 124 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~d~~~~~------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~---- 124 (145)
+.+.+++.+... ...|.+.+.--.+. ..|.+.++.+.+. ..+|++++++- +.+....+...|++++
T Consensus 118 ~~s~~~a~~A~~--~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 118 LRDRHGAMEIGE--LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALER 193 (221)
T ss_pred CCCHHHHHHhhh--cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhH
Confidence 346666666443 35899988754421 2367788777664 46899988765 6667788899999988
Q ss_pred -ecCCCCHHHHHHHHHHHHh
Q 048318 125 -HTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 125 -l~kP~~~~~L~~~i~~~~~ 143 (145)
+.+.-++.+-...+.+.++
T Consensus 194 ai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 194 AVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred HhhCCCCHHHHHHHHHHHHh
Confidence 3455566655555555544
No 347
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=73.59 E-value=33 Score=25.14 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
....++..+++.|.++.. + .+....+..+.. ..+|+|++... ..+...+++.+++.....+++..+..
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~-~~~d~i~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~ 231 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA-AGPDAVVVAGH--FPDAVLLVRQMKELGYNPKALYMTVG 231 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh-cCCCEEEECCc--chhHHHHHHHHHHcCCCCCEEEEecC
Confidence 345566677778887652 1 344555666665 57999998653 34677888888887666677655443
No 348
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=73.59 E-value=29 Score=24.46 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=80.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe----EEEEcCHHHHHHHHHcCCCccEEEEe----cCCCCCC-HHHHHHHHHhcC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK----VEVAENGKEAVDLFRSGAKFDIVFID----KEMPVMN-GIEATREIRSMG 96 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~----v~~~~~~~~al~~~~~~~~~dlvl~d----~~~~~~~-~~~~~~~l~~~~ 96 (145)
++|+-+-+.......++..= +.|.. .....+.++..+.+.. ..+|.+++= .+..+.+ +++.+..+++..
T Consensus 84 ~tV~g~A~~~TI~~~i~~A~-~~~~~v~iDl~~~~~~~~~~~~l~~-~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~ 161 (217)
T COG0269 84 VTVLGAADDATIKKAIKVAK-EYGKEVQIDLIGVWDPEQRAKWLKE-LGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLS 161 (217)
T ss_pred EEEEecCCHHHHHHHHHHHH-HcCCeEEEEeecCCCHHHHHHHHHH-hCCCEEEEEecccHhhcCCCccHHHHHHHHHhh
Confidence 46677777777777666554 44433 2345678999998885 568988864 3433433 367788887754
Q ss_pred CcceEEEEeCCCCHHHHHHHHHhCCceee-----cCCCCHHHHHHHHHHHHhc
Q 048318 97 IKIKIVGVTSLNSEAEREAFMQAGLDLCH-----TKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~L~~~i~~~~~~ 144 (145)
.....+.+++.-..+....+...|++-|+ .+--++.+-.+.++..+.+
T Consensus 162 ~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 162 DLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred ccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhc
Confidence 43345678999999999999999988775 5566777777777766643
No 349
>PRK09776 putative diguanylate cyclase; Provisional
Probab=73.46 E-value=26 Score=30.20 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhc--CCcceEEEEeCCC
Q 048318 38 RTIHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSM--GIKIKIVGVTSLN 108 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~--~~~~~iv~l~~~~ 108 (145)
.......|++.||.+.. +.++...+..+.. .++|.|=+|-.+-. .+...+++.+... ..++++| .-.-.
T Consensus 976 ~~~~~~~l~~~G~~~~lddfg~g~~~~~~l~~-~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-aegVE 1053 (1092)
T PRK09776 976 ASRLVQKLRLAGCRVVLSDFGRGLSSFNYLKA-FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTI-AGPVE 1053 (1092)
T ss_pred HHHHHHHHHHCCcEEEEcCCCCCchHHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEE-ecccC
Confidence 33445567888988764 5577777777776 67999999964421 1234455555432 2244444 35556
Q ss_pred CHHHHHHHHHhCCce----eecCCCCHHHHHHHHH
Q 048318 109 SEAEREAFMQAGLDL----CHTKPLSVDKILPLME 139 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i~ 139 (145)
+.+....+.+.|++. |+.||...+++....+
T Consensus 1054 t~~~~~~l~~~g~~~~QG~~~~~P~~~~~~~~~~~ 1088 (1092)
T PRK09776 1054 LPLVLDTLSGIGVDLAYGYAIARPQPLDLLLNSSY 1088 (1092)
T ss_pred CHHHHHHHHHcCCCEEeccccCCCCcHHHHHhhhh
Confidence 777788888888743 4788999888876543
No 350
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.39 E-value=13 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=26.5
Q ss_pred CCccEEEEecCCCCCCHH--------HHHHHHHhcCCcceEEEEeCC
Q 048318 69 AKFDIVFIDKEMPVMNGI--------EATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~~~~--------~~~~~l~~~~~~~~iv~l~~~ 107 (145)
.+||+|++.+...+.... .+++.+++..|.+||++++..
T Consensus 56 ~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~ 102 (177)
T cd01844 56 VPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPR 102 (177)
T ss_pred cCCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecC
Confidence 579999997765543222 455666767788898887744
No 351
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=73.28 E-value=21 Score=26.03 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
.+.++..|+..+..+| -+. -.+.++...+.+.|+|.+...|+++..+...++.
T Consensus 171 ~~av~~~R~~~~~~~I-gVe-v~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~ 223 (272)
T cd01573 171 LKALARLRATAPEKKI-VVE-VDSLEEALAAAEAGADILQLDKFSPEELAELVPK 223 (272)
T ss_pred HHHHHHHHHhCCCCeE-EEE-cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 5567777776655544 333 3456777888899999888889999887666653
No 352
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=73.21 E-value=33 Score=24.92 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHH
Q 048318 39 TIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA 111 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~ 111 (145)
..++..+++.|..+.. ..+....+..+.. ..||+|++-.. ..++..+++++++.....+++......++.
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~-~~pd~v~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 231 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA-GGPDALVVIGY--PETGSGILRSAYEQGLFDKFLLTDGMKSDS 231 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEecc--cchHHHHHHHHHHcCCCCceEeeccccChH
Confidence 4556667777877652 2366667777776 67999988643 347888899998876666776543333433
No 353
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=73.19 E-value=39 Score=26.28 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=57.7
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~ 97 (145)
.....|++++........+.+.|.+.||.+. .+.+.+++...... ..-|...-+.......+.+.+..+....+
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~-~~~d~~~~~v~~~~~~~~d~~~~~~~~~~ 151 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV-FFVDLGLQNVEADVVTAIDILKKLVEAVP 151 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc-cccccccceeeeccccccchhhhhhhhcc
Confidence 3466899999999999999999999999988 67788888777652 23566677777777777888888777554
No 354
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=73.07 E-value=45 Score=26.47 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=56.0
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCC-------CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCc---e
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVM-------NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD---L 123 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-------~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~---~ 123 (145)
.+.+.+++..... ..+|.|.+..-.+.. -|++.++.+... ..+|++++..- +.+....++..|++ .
T Consensus 396 S~h~~~e~~~a~~--~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~g 471 (502)
T PLN02898 396 SCKTPEQAEQAWK--DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKG 471 (502)
T ss_pred eCCCHHHHHHHhh--cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCce
Confidence 5667777665544 358998876544332 267888887653 46899887655 46667788999988 4
Q ss_pred e-----ecCCCCHHHHHHHHHHHHh
Q 048318 124 C-----HTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 124 ~-----l~kP~~~~~L~~~i~~~~~ 143 (145)
+ +...-++.+..+.+.+.+.
T Consensus 472 vav~~~i~~~~d~~~~~~~~~~~~~ 496 (502)
T PLN02898 472 VAVVSALFDQEDVLKATRKLHAILT 496 (502)
T ss_pred EEEEeHHhcCCCHHHHHHHHHHHHH
Confidence 4 3345566666665555543
No 355
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=72.93 E-value=43 Score=26.20 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=53.1
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCCC---CCHHHHHH---HHHhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMPV---MNGIEATR---EIRSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~---~~~~~~~~---~l~~~~~~~~iv~l 104 (145)
--|....+.+...|...||.++.. . ...|+++++. ..-+ ......+. .+++..+..+|++.
T Consensus 17 ~~N~~dse~~~~~l~~~G~~~~~~-----------~-~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv~ 84 (445)
T PRK14340 17 QMNQADSEIITALLQDEGYVPAAS-----------E-EDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGVL 84 (445)
T ss_pred CCcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 567778889999999999887641 1 2368998884 2211 22333333 33344556555544
Q ss_pred eCCCCHHHHHHHHH--hCCceeecCCCCHHHHHHHHHHH
Q 048318 105 TSLNSEAEREAFMQ--AGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 105 ~~~~~~~~~~~~~~--~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+... .....+.++ .++| ++.-+-....+...+.+.
T Consensus 85 GC~a-~~~~~e~~~~~p~vd-~v~g~~~~~~i~~~~~~~ 121 (445)
T PRK14340 85 GCVP-QYEREEMFSMFPVID-FLAGPDTYRVLPGLIADA 121 (445)
T ss_pred Cccc-ccchHHHHhhCCCCc-EEECCCCHHHHHHHHHHH
Confidence 3332 222233333 2444 445666666666666544
No 356
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=72.89 E-value=35 Score=25.13 Aligned_cols=77 Identities=9% Similarity=0.066 Sum_probs=50.1
Q ss_pred ceEEEEeCcHH----HHHHHHHHHHH--cCCeEEE-------E-cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHH
Q 048318 26 LFALVVDDDCF----IRTIHSMALKS--LGFKVEV-------A-ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATRE 91 (145)
Q Consensus 26 ~~iLii~~~~~----~~~~l~~~L~~--~g~~v~~-------~-~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~ 91 (145)
.++.++..+.. ..+.++..+++ .|..+.. . .+....+..+.. ..||+|++...- .+...+++.
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~-~~~d~v~~~~~~--~~~~~~~~~ 220 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKA-SGADTVITGNWG--NDLLLLVKQ 220 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHH-cCCCEEEEcccC--chHHHHHHH
Confidence 34555554333 44667777877 7777642 1 455566666766 579999996643 367789999
Q ss_pred HHhcCCcceEEEEe
Q 048318 92 IRSMGIKIKIVGVT 105 (145)
Q Consensus 92 l~~~~~~~~iv~l~ 105 (145)
+++...+.+++..+
T Consensus 221 ~~~~g~~~~~~~~~ 234 (342)
T cd06329 221 AADAGLKLPFYTPY 234 (342)
T ss_pred HHHcCCCceEEecc
Confidence 99877777765443
No 357
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=72.88 E-value=14 Score=22.26 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=47.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
+.+.-.|......|..+|+..|+.|.... +++ . ...|++|.|..... ..+.-..|.++..
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~-~q~------~-~~~DvlItD~~~~~------------~~~~~a~I~~s~~ 61 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYE-GQQ------P-DADDVLITDYEPQV------------AWPGRAVIRFSRR 61 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-S-S-----------TT-EEEEESS-S----------------SSEEEEEESS
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEec-CCC------C-CCCcEEEECCCccc------------CCcceEEEEEchH
Confidence 56677888899999999999999999876 221 1 24699999986532 1111223445544
Q ss_pred CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 108 NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.-.. ..+......+....++.||...+.++
T Consensus 62 hiG~----p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 62 HIGP----PQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp -SSS------TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred hCCC----ccccCCCcEEeccCCHHHHHHHHHHh
Confidence 3221 12233344455566667777666654
No 358
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=72.88 E-value=23 Score=26.04 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.+.++.+|+..+..+|. ..-.+.++..+++++|+|-++.-.++++++...+..+
T Consensus 177 ~~av~~~r~~~~~~kIe--VEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 177 SGAINQLRRHAPEKKIV--VEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHHhCCCCCEE--EECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35666777766665643 4445888899999999999999999999999988754
No 359
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.79 E-value=32 Score=24.63 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 34 DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 34 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
..+....|.++-++.|....+..-..++++.+.+ +++-.+-+.-.+.+-+.+++.+.+. ..|+|+-|+..+.+++
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~---~~~~~~KIaS~dl~n~~lL~~~A~t--gkPvIlSTG~stl~EI 128 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFSTPFDEESVDFLEE---LGVPAYKIASGDLTNLPLLEYIAKT--GKPVILSTGMSTLEEI 128 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH---HT-SEEEE-GGGTT-HHHHHHHHTT---S-EEEE-TT--HHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH---cCCCEEEeccccccCHHHHHHHHHh--CCcEEEECCCCCHHHH
Confidence 3455667777778889887766667777777754 3444444444566778888888764 6788888888887776
Q ss_pred HHHH----HhCCcee
Q 048318 114 EAFM----QAGLDLC 124 (145)
Q Consensus 114 ~~~~----~~g~~~~ 124 (145)
..+. +.|..++
T Consensus 129 ~~Av~~~~~~~~~~l 143 (241)
T PF03102_consen 129 ERAVEVLREAGNEDL 143 (241)
T ss_dssp HHHHHHHHHHCT--E
T ss_pred HHHHHHHHhcCCCCE
Confidence 6654 4455544
No 360
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=72.78 E-value=36 Score=26.38 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCCCCHHHHHHHHHhc-CCcceEEEEeCCCCH
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPVMNGIEATREIRSM-GIKIKIVGVTSLNSE 110 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~~~~~~~~~~l~~~-~~~~~iv~l~~~~~~ 110 (145)
-|....+.+...|...||.++. .. ...|+++++.- .-........+.+++. ....+|+ +++-...
T Consensus 11 ~N~~ds~~~~~~l~~~G~~~~~-----------~~-~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vv-v~GC~a~ 77 (420)
T TIGR01578 11 LNNGDSEIMKNSLAAYGHELVN-----------NA-EEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVV-VAGCMPQ 77 (420)
T ss_pred CcHHHHHHHHHHHHHCCCEECC-----------Cc-ccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEE-EECCcCc
Confidence 4566778888899999997662 11 34688887742 2222223333443331 1133344 4333222
Q ss_pred HHHHHHHH-hCCceeecCCCCHHHHHHHHHHH
Q 048318 111 AEREAFMQ-AGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 111 ~~~~~~~~-~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
..-.+... .+++. +..+-+..++...+...
T Consensus 78 ~~~e~~~~~~~~~~-~~g~~~~~~l~~~~~~~ 108 (420)
T TIGR01578 78 AQKESVYDNGSVAS-VLGVQAIDRLVEVVEET 108 (420)
T ss_pred cChHHHHhhCCccE-EEcCCCHHHHHHHHHHH
Confidence 22222222 23333 33566666666655543
No 361
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.71 E-value=21 Score=26.12 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee------ecCCCCHHHHHHHHHHHHh
Q 048318 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC------HTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 87 ~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~------l~kP~~~~~L~~~i~~~~~ 143 (145)
+.+.++++.. ++||+...+-.+.+...+++..|||.+ +.+|.-..++..-+.+.++
T Consensus 224 ~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~ 285 (300)
T TIGR01037 224 RMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLK 285 (300)
T ss_pred HHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHH
Confidence 5667777644 589998888899999999999999874 4567556666666665554
No 362
>PRK08999 hypothetical protein; Provisional
Probab=72.57 E-value=35 Score=25.01 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCC-------CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVM-------NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-------~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
.+.+.+++.+... ..+|.+++.--.+.. -|++.++.+.+. ..+|++++++- +.+......+.|++++
T Consensus 232 S~h~~~~~~~a~~--~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~-~~~Pv~AiGGI-~~~~~~~~~~~g~~gv 305 (312)
T PRK08999 232 SCHDAEELARAQR--LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG-VPLPVYALGGL-GPGDLEEAREHGAQGI 305 (312)
T ss_pred ecCCHHHHHHHHh--cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHhCCCEE
Confidence 5678887665543 358999988755432 367788887764 36899998866 6666777899999887
No 363
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=72.56 E-value=44 Score=26.15 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=60.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCH--HHHHHHHHhcCCcce
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG--IEATREIRSMGIKIK 100 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~--~~~~~~l~~~~~~~~ 100 (145)
-.+|.=+|-.+...+..+...+.+|.. +. .+.+.++..........||.|++|- ...| -++++.+.+..+. .
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP---PR~G~~~~~lk~l~~~~p~-~ 390 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP---PRAGADREVLKQLAKLKPK-R 390 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC---CCCCCCHHHHHHHHhcCCC-c
Confidence 346888999999999999998888766 44 5567777666554335799999984 3344 3688888765433 4
Q ss_pred EEEEeCCCCHHHHHHHHHhCCcee
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
||.++. ...+...+....--.+|
T Consensus 391 IvYVSC-NP~TlaRDl~~L~~~gy 413 (432)
T COG2265 391 IVYVSC-NPATLARDLAILASTGY 413 (432)
T ss_pred EEEEeC-CHHHHHHHHHHHHhCCe
Confidence 454443 33444444443333333
No 364
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=72.54 E-value=12 Score=26.79 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=35.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCH
Q 048318 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSV 131 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~ 131 (145)
..||++++--=.+...|-.-.+.+-+. ..+|.|++++...... .++++....+|+.-+.++
T Consensus 58 ~~pdf~I~isPN~~~PGP~~ARE~l~~-~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 58 WDPDFVIVISPNAAAPGPTKAREMLSA-KGIPCIVISDAPTKKA-KDALEEEGFGYIIVKADP 118 (276)
T ss_dssp H--SEEEEE-S-TTSHHHHHHHHHHHH-SSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS-
T ss_pred hCCCEEEEECCCCCCCCcHHHHHHHHh-CCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecCc
Confidence 579988886555666777666665532 3678888988765554 456666666676555543
No 365
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.46 E-value=27 Score=25.77 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=47.8
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.-. .+-.+.++.+|+..+....| -..-.+.++..++++.|+|-+..-+++++++...+..+
T Consensus 166 ~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I-~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 166 DDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTI-EVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred hheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEE-EEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 566666654321 22345666777765533333 33445677788999999999999999999999988754
No 366
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.28 E-value=41 Score=25.70 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=44.1
Q ss_pred CHHHHHHHHHcCCCccEEEEecCC-------CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEM-------PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~-------~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..+..+.+.+ ...|+|.++... +..+-.++.+.+++. ++|+|. ..-.+.+....+++.|+|.+..
T Consensus 142 ~~~e~a~~l~e-aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE-AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH-CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45566666665 579999996532 112345555555542 678765 5667888888899999999854
No 367
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.19 E-value=4.4 Score=26.17 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCccEEEEecCCCCC----C-------HHHHHHHHHhcCCcceEEEEeC
Q 048318 69 AKFDIVFIDKEMPVM----N-------GIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~----~-------~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
.+||+|++-+...+. + -..+++.+++..|++++++++.
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 579999996544332 1 1246666776777888877643
No 368
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=72.18 E-value=23 Score=25.60 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=50.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh-cCCcceEEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS-MGIKIKIVGV 104 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~~~iv~l 104 (145)
++.-.|-+.+..+...+-|+..|+.= .+... .+..+.... ..+|.|++|+- +-+++++.+.+ ..+...++++
T Consensus 121 ~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-~Dv~~~~~~-~~vDav~LDmp----~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 121 HVTTYEIREDFAKTARENLSEFGLGDRVTLKL-GDVREGIDE-EDVDAVFLDLP----DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred eEEEEEecHHHHHHHHHHHHHhccccceEEEe-ccccccccc-cccCEEEEcCC----ChHHHHHHHHHHhCCCcEEEEE
Confidence 57888999999999999998876542 33222 222233333 47999999973 46777777765 3456666666
Q ss_pred eCCC
Q 048318 105 TSLN 108 (145)
Q Consensus 105 ~~~~ 108 (145)
+...
T Consensus 195 ~P~v 198 (256)
T COG2519 195 SPTV 198 (256)
T ss_pred cCCH
Confidence 6553
No 369
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=71.92 E-value=21 Score=22.14 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHH
Q 048318 35 CFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAE 112 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~ 112 (145)
......++..+...|..+....+.+........-.+-|++|+= ..++ .+-.+.++..+++ .+|+|.+|+..+...
T Consensus 12 ~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i-S~sG~t~~~~~~~~~a~~~--g~~vi~iT~~~~s~l 88 (128)
T cd05014 12 GHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI-SNSGETDELLNLLPHLKRR--GAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHC--CCeEEEEeCCCCCch
Confidence 3445667777777787877665543322222211223554442 3333 3345666666665 689999999877665
Q ss_pred HHHHHHhCCceeecCCC
Q 048318 113 REAFMQAGLDLCHTKPL 129 (145)
Q Consensus 113 ~~~~~~~g~~~~l~kP~ 129 (145)
.. .+|..+.-|.
T Consensus 89 a~-----~ad~~l~~~~ 100 (128)
T cd05014 89 AK-----LSDVVLDLPV 100 (128)
T ss_pred hh-----hCCEEEECCC
Confidence 43 4666665443
No 370
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=71.90 E-value=34 Score=24.58 Aligned_cols=84 Identities=10% Similarity=0.090 Sum_probs=49.7
Q ss_pred eEEEE--eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEE
Q 048318 27 FALVV--DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 27 ~iLii--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv 102 (145)
+|.++ +........+...|...|..+....+.......+..-.+-|++|+ ...++. +..+.++..+++ .+++|
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~-iS~sg~~~~~~~~~~~ak~~--ga~iI 206 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLA-ISYSGERRELNLAADEALRV--GAKVL 206 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEE-EcCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 44444 444555677777777889888876666554443332123465443 344443 234556665654 68899
Q ss_pred EEeCCCCHHHH
Q 048318 103 GVTSLNSEAER 113 (145)
Q Consensus 103 ~l~~~~~~~~~ 113 (145)
++|+.......
T Consensus 207 ~IT~~~~s~la 217 (278)
T PRK11557 207 AITGFTPNALQ 217 (278)
T ss_pred EEcCCCCCchH
Confidence 99998766544
No 371
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=71.78 E-value=32 Score=24.23 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=49.5
Q ss_pred EcCHHHHHHHHHcCCCcc-EEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 55 AENGKEAVDLFRSGAKFD-IVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~d-lvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
..+..+..+.+.. ...| +++.|.+-.. ..-+++++++++.. .+|+++-.+-.+.+....++..|++..+.-
T Consensus 26 ~~d~~~~a~~~~~-~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNE-QGADELVFLDITASSEGRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHH-CCCCEEEEEcCCcccccCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 3366666666655 3455 7777776321 23466788887753 579998888888999999999998877543
No 372
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.77 E-value=30 Score=25.42 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=49.0
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.-. .+-.+.++.+|+..+ ..+|.+=.. +.++..++++.|+|-++.-.++++++...+..+
T Consensus 164 ~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~--tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 164 DDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVD--TLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred hhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 556665544322 223466777777665 456655444 667888999999999999999999999998854
No 373
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=71.69 E-value=41 Score=25.42 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=60.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+.+|.|++- .. .......+... +++++ .++...+..+.+.+ .+.+-. -.+-.+++ . .+++-+
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~--~~gi~~------y~~~eell----~-d~Di~~ 67 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAH--RLGVPL------YCEVEELP----D-DIDIAC 67 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH--HhCCCc------cCCHHHHh----c-CCCEEE
Confidence 467888887 43 44444455443 57766 45444443333333 133211 01122222 1 245555
Q ss_pred EEEeC----CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 102 VGVTS----LNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 102 v~l~~----~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|.+.. ..+.+....++++|..=++-||+..++..+.++.+-+
T Consensus 68 V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 68 VVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 55522 3567888999999999999999998777776665544
No 374
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=71.66 E-value=19 Score=26.49 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEE-------cCHHHHHHHHHcCCCccEEEEecCC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVA-------ENGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~-------~~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
+|||.+.+......|...|. .++++... .+.+...+.+.+ .+||+||--.-.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~-~~PDvVIn~AAy 60 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRE-TRPDVVINAAAY 60 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHh-hCCCEEEECccc
Confidence 48999999999999999997 55666532 355666677766 579999955433
No 375
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.62 E-value=45 Score=25.79 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=45.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcC--CCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSG--AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|||+..-..-+.....+.+...++|+.++...+..+.+... .....+.+|.. +.-.+.+.|++. ++-|-+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~----d~~al~~li~~~--d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA----DVDALVALIKDF--DLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc----ChHHHHHHHhcC--CEEEEe
Confidence 4567777754444444444433336777666554443333221 13455666543 222233344432 444444
Q ss_pred EeCCCCHHHHHHHHHhCCce
Q 048318 104 VTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~ 123 (145)
+....+......+.+.|++-
T Consensus 76 ~p~~~~~~i~ka~i~~gv~y 95 (389)
T COG1748 76 APPFVDLTILKACIKTGVDY 95 (389)
T ss_pred CCchhhHHHHHHHHHhCCCE
Confidence 44445566666667777643
No 376
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=71.50 E-value=33 Score=24.76 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCccEEEEecCC----CC---CCHHHHHHHHHhcCCcceEEEEeCCC-C-----HHHHHHHHHhCCcee
Q 048318 58 GKEAVDLFRSGAKFDIVFIDKEM----PV---MNGIEATREIRSMGIKIKIVGVTSLN-S-----EAEREAFMQAGLDLC 124 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~d~~~----~~---~~~~~~~~~l~~~~~~~~iv~l~~~~-~-----~~~~~~~~~~g~~~~ 124 (145)
...|++.+......+++++.... |. .-.+..+..+++.. +.||++-++.. . ......|...|++++
T Consensus 148 ~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 148 WLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 44566666553457899998622 21 22456667777644 67887634442 3 455667889999973
No 377
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=71.13 E-value=20 Score=21.69 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCCCC---CHHHHHHHHHhcC-CcceEEEEe
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMPVM---NGIEATREIRSMG-IKIKIVGVT 105 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~~---~~~~~~~~l~~~~-~~~~iv~l~ 105 (145)
-|....+.+...|...||.++... ...|+++++. ..-+. .....++.+++.. |..+|++.+
T Consensus 11 ~N~~Dse~i~~~l~~~G~~~~~~~------------e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~G 76 (98)
T PF00919_consen 11 MNQYDSERIASILQAAGYEIVDDP------------EEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTG 76 (98)
T ss_pred ccHHHHHHHHHHHHhcCCeeeccc------------ccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 356677888999999999877531 2469999884 33232 3344455555544 566665543
No 378
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=71.10 E-value=32 Score=24.95 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=45.9
Q ss_pred ccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.+++-.+.... +-...++.+|+..++...|.+.. .+.++...+...|+|-+..-|++++.+...+..+
T Consensus 151 ~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev-~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 151 SDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEV-ETLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred cceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEec-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 5666665544222 22245677787665333333443 4567788899999999999999998888766543
No 379
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=71.05 E-value=44 Score=25.44 Aligned_cols=64 Identities=22% Similarity=0.141 Sum_probs=40.7
Q ss_pred ceEEEEeCcHH-----HHHHHHHHHHHcCCeEEEE---------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHH
Q 048318 26 LFALVVDDDCF-----IRTIHSMALKSLGFKVEVA---------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATRE 91 (145)
Q Consensus 26 ~~iLii~~~~~-----~~~~l~~~L~~~g~~v~~~---------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~ 91 (145)
.++||+.+... ....+...|+..|.++..+ .+.+++.+..++ ..+|+|+- ..+++..+..+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~Iia---vGGGS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVVG---LGGGSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCccHHHHHHH
Confidence 47888887654 3356777788778766544 234455666666 57998883 235666666665
Q ss_pred HH
Q 048318 92 IR 93 (145)
Q Consensus 92 l~ 93 (145)
+.
T Consensus 102 ia 103 (380)
T cd08185 102 IA 103 (380)
T ss_pred HH
Confidence 53
No 380
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.03 E-value=31 Score=24.55 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCcceEEEEe-----CCCCHHHHHHHHHhCCceeecC--CCC-HHHHHHHHHH
Q 048318 87 EATREIRSMGIKIKIVGVT-----SLNSEAEREAFMQAGLDLCHTK--PLS-VDKILPLMED 140 (145)
Q Consensus 87 ~~~~~l~~~~~~~~iv~l~-----~~~~~~~~~~~~~~g~~~~l~k--P~~-~~~L~~~i~~ 140 (145)
++++.+++. .++|+++++ ..........+.+.|++.++.. |++ .+++...+..
T Consensus 64 ~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~ 124 (244)
T PRK13125 64 PLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEI 124 (244)
T ss_pred HHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHH
Confidence 456666643 466775442 2233444677888899998875 343 3444444443
No 381
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=71.00 E-value=26 Score=26.94 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=12.4
Q ss_pred eEEEEeCcHHHHHHHHHHH
Q 048318 27 FALVVDDDCFIRTIHSMAL 45 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L 45 (145)
.||+||.+..+...++..+
T Consensus 213 ~VLVVEKeavF~rL~e~~~ 231 (384)
T PLN00060 213 YIIVVEKDAIFQRLAEDRF 231 (384)
T ss_pred EEEEEecHHHHHHHHHhhh
Confidence 4677777777666655444
No 382
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=70.89 E-value=33 Score=24.01 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=48.6
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC-CC--HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV-MN--GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~--~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..++.+.++.+.....|++|++|+.--+ ++ ..+++..+..... -|+++=..-...+....+...|+++.+.
T Consensus 135 ~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~-~pVllGGGV~g~Edlel~~~~Gv~gvLv 209 (229)
T COG1411 135 WLEDFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVLELSE-HPVLLGGGVGGMEDLELLLGMGVSGVLV 209 (229)
T ss_pred CchhHHHHHHHHhccCCCCeEEEEccccccccCCCHHHHHHHHHhcc-CceeecCCcCcHHHHHHHhcCCCceeee
Confidence 35566666666655567999999986543 33 4677877776432 3555444556777777778899998874
No 383
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=70.75 E-value=29 Score=23.28 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPV 82 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~ 82 (145)
.+.+|+|+.........+..+|...|..++.+. +.++..+.+. ..|+||.-..-+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~---~aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK---QADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh---hCCEEEEcCCCCc
Confidence 467899999988878888888888888876444 4445544443 3799888775543
No 384
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.70 E-value=30 Score=25.40 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 87 EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 87 ~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+.++.+|...+..+|. ..-.+.++...++++|+|-++.-.++++++...+..+-
T Consensus 171 ~av~~~r~~~~~~kIe--VEv~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 171 EAIRRAKEFSVYKVVE--VEVESLEDALKAAKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHhCCCCcEE--EEeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 4566667666666654 44457888999999999999888899999998887653
No 385
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=70.62 E-value=38 Score=24.58 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=57.0
Q ss_pred eEEEEeCcHHHHHHHHHHHH---H-cC--CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh-cCCc
Q 048318 27 FALVVDDDCFIRTIHSMALK---S-LG--FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS-MGIK 98 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~---~-~g--~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~ 98 (145)
.+|+.++|-...-.+...++ + .+ ..+ ..+.+.+|+.+.... .+|.|.+|---+ +-++...+ ....
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~--gaDyI~ld~~~~-----e~lk~~v~~~~~~ 222 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA--GADIIMLDNMKP-----EEIKEAVQLLKGR 222 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc--CCCEEEECCCCH-----HHHHHHHHHhcCC
Confidence 56788887555433333332 2 34 333 488899999988764 589999985322 33333332 2223
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+|++ .++.-+.+...+....|+|.+-
T Consensus 223 ipi~-AsGGI~~~ni~~~a~~Gvd~Is 248 (265)
T TIGR00078 223 VLLE-ASGGITLDNLEEYAETGVDVIS 248 (265)
T ss_pred CcEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 6665 4566678888899999998874
No 386
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=70.43 E-value=27 Score=29.75 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCccEEEEe-cCCCCCCHHH-HHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 69 AKFDIVFID-KEMPVMNGIE-ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 69 ~~~dlvl~d-~~~~~~~~~~-~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
..+.++|+| .++-...+.+ +++.|.+-..++.+|+++.. .+.+...++.-+..|-+++++.++|...|.++++
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH
Confidence 357899998 4444445554 44555554446666666632 2335556777778888889999999988887764
No 387
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.42 E-value=32 Score=26.05 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=43.0
Q ss_pred CccEEEEec-CCCCCCHH-HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGI-EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~-~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+.++|+|- +.-...++ .+++.+.+-...+.+|+.+.. .......+..-+..|-.+|++.+++...+...++
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~--~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~ 192 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD--VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILI 192 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC--hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 356899884 22222233 344555543445555555432 3334445565667777889999999988877654
No 388
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=70.39 E-value=34 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=25.7
Q ss_pred ccccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEE
Q 048318 20 SAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEV 54 (145)
Q Consensus 20 ~~~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~ 54 (145)
...+.+++|||......+...+...|...|+.|..
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 34445678999998888887777777667888763
No 389
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=70.37 E-value=8.8 Score=26.42 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCCC----CCHHHHHHHHHh--cCCcceEEEEeCCCCH
Q 048318 39 TIHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMPV----MNGIEATREIRS--MGIKIKIVGVTSLNSE 110 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~~----~~~~~~~~~l~~--~~~~~~iv~l~~~~~~ 110 (145)
+.+.. ++..|+.+. -+......+..+.. .+||.|-+|..+.. .....+++.+.. +...+++| ..+-.+.
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~-l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 214 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLAS-LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVI-AEGVESE 214 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHH-HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEE-EECE-SH
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhh-cccccceeecccccccchhhHHHHHHHHHHHhhccccccc-eeecCCH
Confidence 44443 677898876 34444555665655 57999999986642 223444554433 12245554 5777788
Q ss_pred HHHHHHHHhCCcee
Q 048318 111 AEREAFMQAGLDLC 124 (145)
Q Consensus 111 ~~~~~~~~~g~~~~ 124 (145)
.....+.+.|++.+
T Consensus 215 ~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 215 EQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHTTESEE
T ss_pred HHHHHHHHcCCCEE
Confidence 88888899998754
No 390
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=70.24 E-value=15 Score=23.35 Aligned_cols=52 Identities=8% Similarity=-0.014 Sum_probs=33.0
Q ss_pred EecCCCCCCHHHHHHHHHhc-CCcceEEE--EeCCCCHHHHHHHHHhCCceeecC
Q 048318 76 IDKEMPVMNGIEATREIRSM-GIKIKIVG--VTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 76 ~d~~~~~~~~~~~~~~l~~~-~~~~~iv~--l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.-.+...-.+.++.-.-+-+ ++++.||- .++.-+.+.+.+|++.|+|+.++-
T Consensus 6 F~C~wcsygaaDlag~~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~ 60 (132)
T COG1908 6 FACNWCSYGAADLAGTSRMQYPPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVA 60 (132)
T ss_pred EEcccccccchhhhccccccCCCceEEEEeeccCccCHHHHHHHHHcCCCeEEEe
Confidence 33344444455555444433 34555543 466679999999999999999864
No 391
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.21 E-value=38 Score=26.24 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=50.1
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCCCC---CHH---HHHHHHHhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMPVM---NGI---EATREIRSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~~---~~~---~~~~~l~~~~~~~~iv~l 104 (145)
--|....+.+...|...||.++.- . ...|+++++. ..-.. ... ..++++++..|..++|+.
T Consensus 12 ~~N~~dse~~~~~l~~~G~~~~~~-----------~-~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~ 79 (418)
T PRK14336 12 QMNQAESERLGRLFELWGYSLADK-----------A-EDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALT 79 (418)
T ss_pred CCcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 346677788888998899887742 1 2369999985 22222 223 233334445566666654
Q ss_pred eCCCCHHHHHHHH-HhCCceeecCCCCHHHHHHHH
Q 048318 105 TSLNSEAEREAFM-QAGLDLCHTKPLSVDKILPLM 138 (145)
Q Consensus 105 ~~~~~~~~~~~~~-~~g~~~~l~kP~~~~~L~~~i 138 (145)
+..... .-.+.. .....+++..+-...++...+
T Consensus 80 GC~~~~-~~~~l~~~~p~vd~v~g~~~~~~~~~~~ 113 (418)
T PRK14336 80 GCLVGQ-DISLIRKKFPFVDYIFGPGSMPDWREIP 113 (418)
T ss_pred CChhcC-CHHHHHhhCCCCcEEECCCCHHHHHHHH
Confidence 433322 222222 232334445665555555443
No 392
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=70.13 E-value=40 Score=24.68 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=47.6
Q ss_pred EcCHHHHHHHHHcCCCccEEEEec---C-CC---CCCHHHHHHHHHhcCCcceEEEEeCC-CCHHHHHHHHHhCCcee
Q 048318 55 AENGKEAVDLFRSGAKFDIVFIDK---E-MP---VMNGIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLC 124 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~d~---~-~~---~~~~~~~~~~l~~~~~~~~iv~l~~~-~~~~~~~~~~~~g~~~~ 124 (145)
+.+.+++.+.... ..+|.+-+.. + .. ..=+++.++.+++.. .+|+++..++ -+.+....+.+.|++.+
T Consensus 152 ~t~~eea~~f~~~-tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDEAEQFVKE-TGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHHHHHHHHH-HCcCEEeeccCccccccCCCCccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4588889888864 3588877542 1 11 123588888888754 5899888744 46677888899998887
No 393
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=70.05 E-value=16 Score=21.90 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=27.0
Q ss_pred ceEEEEeCcHH---HHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHH
Q 048318 26 LFALVVDDDCF---IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIR 93 (145)
Q Consensus 26 ~~iLii~~~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~ 93 (145)
.++..+|..+. ....+++ ..-.+.-.....+..+.+..+.. .++|++++|-..........++.+.
T Consensus 24 ~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~-~~~dli~iDg~H~~~~~~~dl~~~~ 92 (106)
T PF13578_consen 24 GKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPD-GPIDLIFIDGDHSYEAVLRDLENAL 92 (106)
T ss_dssp ---EEEESS-------------GGG-BTEEEEES-THHHHHHHHH---EEEEEEES---HHHHHHHHHHHG
T ss_pred CCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCC-CCEEEEEECCCCCHHHHHHHHHHHH
Confidence 36788898883 4444443 11112222245566666766654 4799999998654333333344433
No 394
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=69.88 E-value=36 Score=24.02 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHcCCCcc-EEEEecC-CCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 56 ENGKEAVDLFRSGAKFD-IVFIDKE-MPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~d-lvl~d~~-~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.+..+..+.... . ++ ++++|++ .... ..+++++.+.+. ...|+.+=..-.+.+....++..|++..+.-
T Consensus 30 ~dp~~~a~~~~~-~-~~~l~ivDldga~~g~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSE-Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHH-h-CCEEEEEECcchhcCCcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 366666666655 4 45 7778876 2222 457788888764 4678887667788888999999999987754
No 395
>PRK07413 hypothetical protein; Validated
Probab=69.84 E-value=21 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 64 LFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 64 ~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
.+.+ ..||+|++|--+.. .+--++++.++++++.+-+| +|....+....
T Consensus 120 ~i~s-g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evV-LTGR~ap~~Li 173 (382)
T PRK07413 120 AIAS-GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEII-ITGRAAPQSLL 173 (382)
T ss_pred HHhC-CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE-EeCCCCCHHHH
Confidence 3444 57999999964332 46778889998877777776 56655444443
No 396
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=69.73 E-value=23 Score=26.06 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=47.8
Q ss_pred CHHHHHHHHHc--CCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHH
Q 048318 57 NGKEAVDLFRS--GAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDK 133 (145)
Q Consensus 57 ~~~~al~~~~~--~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 133 (145)
..+++++.... ...-|++++.....+. .-..+.+.++...|++|++++..........++.+.|+.-.+.-+.....
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 45677776542 2458999997422222 23345555554455678875543222223667788898887655554444
Q ss_pred HHHHHHHH
Q 048318 134 ILPLMEDL 141 (145)
Q Consensus 134 L~~~i~~~ 141 (145)
....++..
T Consensus 247 a~~a~~~~ 254 (285)
T TIGR02320 247 AYAAMQQV 254 (285)
T ss_pred HHHHHHHH
Confidence 44444443
No 397
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=69.73 E-value=19 Score=21.77 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.3
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC--eEE-EEcCHHHHHHHHHcCCCccEEEEecCC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF--KVE-VAENGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
.++.-+|-++...+..+..+...+. .+. ...+..+..+.+.. .++|+|+.|.=.
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~D~Iv~npP~ 80 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD-GKFDLIVTNPPY 80 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT-T-EEEEEE--ST
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC-ceeEEEEECCCC
Confidence 5789999999999999999988765 244 55566666544444 579999998644
No 398
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=69.42 E-value=41 Score=24.43 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCeEEEE-------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCH
Q 048318 38 RTIHSMALKSLGFKVEVA-------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSE 110 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~-------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~ 110 (145)
...++..++..|+.+... .+....+..+.. ..||+|++... ..+...+++.+++.....+++......+.
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~-~~~~~vi~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 228 (334)
T cd06342 152 ADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA-ANPDAVFFGGY--YPEAGPLVRQMRQLGLKAPFMGGDGLCDP 228 (334)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcCc--chhHHHHHHHHHHcCCCCcEEecCccCCH
Confidence 345566666778876632 345566777766 57999987543 34567788888887666666543333344
Q ss_pred HH
Q 048318 111 AE 112 (145)
Q Consensus 111 ~~ 112 (145)
..
T Consensus 229 ~~ 230 (334)
T cd06342 229 EF 230 (334)
T ss_pred HH
Confidence 33
No 399
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=69.41 E-value=37 Score=24.03 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCeEE-EE-----cCHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 35 CFIRTIHSMALKSLGFKVE-VA-----ENGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~-~~-----~~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
+.....+...+++.++.+. -. .+..+..+.+.. ...|.+-++...++ .-.++.+++++ .++|||...+-
T Consensus 125 p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l~~-aG~d~ihv~~~~~g~~ad~~~I~~i~---~~ipVIgnGgI 200 (233)
T cd02911 125 PERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIEK-AGADIIHVDAMDPGNHADLKKIRDIS---TELFIIGNNSV 200 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHHHH-hCCCEEEECcCCCCCCCcHHHHHHhc---CCCEEEEECCc
Confidence 3344444444455554444 22 244555555555 46887766654443 22356666665 46899988888
Q ss_pred CCHHHHHHHHHhCCceee
Q 048318 108 NSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l 125 (145)
.+.+...+.+..|+|.+.
T Consensus 201 ~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 201 TTIESAKEMFSYGADMVS 218 (233)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 899999999999999884
No 400
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=69.25 E-value=12 Score=26.24 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCeEEEEcCHHH---HHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 39 TIHSMALKSLGFKVEVAENGKE---AVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~~~~~~~~---al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
+++...+..+|..+.++..+.+ .++.++. +.+|.++++|.--.....+.+...+.+...+++|=++-...-.....
T Consensus 36 eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~pd~~e~ea~ 115 (261)
T KOG0189|consen 36 EIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYFPDAVEVEAL 115 (261)
T ss_pred HHHHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEcchhHHHHHH
Confidence 4455566666644444333333 3344432 35799999998665567889999998888778876665444333333
Q ss_pred HHHHhC
Q 048318 115 AFMQAG 120 (145)
Q Consensus 115 ~~~~~g 120 (145)
-+-+.|
T Consensus 116 ~~~K~~ 121 (261)
T KOG0189|consen 116 FASKGG 121 (261)
T ss_pred HHhccc
Confidence 333333
No 401
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=69.04 E-value=43 Score=24.59 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 36 FIRTIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
.....++..++..|+++.. ..+....+..+.. ..+|+|++... ..+...+++.+++.....+++
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~-~~~d~vi~~~~--~~~~~~~~~~~~~~g~~~~~~ 222 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN-SKPDLIVISAL--AADGGNLVRQLRELGYNGLIV 222 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEECCc--chhHHHHHHHHHHcCCCCcee
Confidence 4456777778888888653 2355666777766 57999998764 345677888888876665654
No 402
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=69.00 E-value=53 Score=25.60 Aligned_cols=97 Identities=9% Similarity=0.095 Sum_probs=56.1
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCC----CHHHH---HHHHHhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM----NGIEA---TREIRSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~----~~~~~---~~~l~~~~~~~~iv~l 104 (145)
--|....+.+...|...||.++.- . ...|+++++.---.. ...+. ++.+++..|..+||+
T Consensus 14 ~~N~~ds~~~~~~l~~~g~~~~~~-----------~-~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv- 80 (444)
T PRK14325 14 QMNEYDSSKMADLLGAEGYELTDD-----------P-EEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGV- 80 (444)
T ss_pred CCcHHHHHHHHHHHHHCcCEECCC-----------c-CCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEE-
Confidence 457777888999999999887741 1 247999997532211 22233 344455667777664
Q ss_pred eCCCCHHHHHHHHH-hCCceeecCCCCHHHHHHHHHHH
Q 048318 105 TSLNSEAEREAFMQ-AGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 105 ~~~~~~~~~~~~~~-~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
++........++++ ...-|++..+-....+...+..+
T Consensus 81 gGc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~ 118 (444)
T PRK14325 81 GGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARA 118 (444)
T ss_pred ECchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 44433333344443 33344556676666666665544
No 403
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.93 E-value=35 Score=23.56 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCC--CCCCHHHHHHHHHhcC-CcceEEEEeCCCCHHHHHHHHHhC
Q 048318 45 LKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEM--PVMNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 45 L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~--~~~~~~~~~~~l~~~~-~~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
....|..+. .+.+.+++.+.... .+|.+.+.-.- ....+.+.++.+++.. .+.|+++.+.-.+.+...++...|
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~~--g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALAL--GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHHc--CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 345677754 56777776666543 57877665211 0123457777777654 467998888888889999999999
Q ss_pred Cceeec
Q 048318 121 LDLCHT 126 (145)
Q Consensus 121 ~~~~l~ 126 (145)
++.++.
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 999863
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.90 E-value=54 Score=25.68 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=41.3
Q ss_pred CceEEEEeCcHHHH---HHHHHHHHHcCCeEEEEc---CH----HHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIR---TIHSMALKSLGFKVEVAE---NG----KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~---~~l~~~L~~~g~~v~~~~---~~----~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
+.+|++++-|+... +.++..-+..+..+.... +. .++++.+.. ..+|+||+|.-=-.....++..++..
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~-~~~DvViIDTaGr~~~d~~lm~El~~ 206 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK-ENFDIIIVDTSGRHKQEDSLFEEMLQ 206 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh-CCCCEEEEECCCCCcchHHHHHHHHH
Confidence 45788888876543 333333334455444332 22 234555544 46999999974211122334444443
Q ss_pred ----cCCcceEEEEeCC
Q 048318 95 ----MGIKIKIVGVTSL 107 (145)
Q Consensus 95 ----~~~~~~iv~l~~~ 107 (145)
..|+..++++.+.
T Consensus 207 i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 207 VAEAIQPDNIIFVMDGS 223 (429)
T ss_pred HhhhcCCcEEEEEeccc
Confidence 2344445555443
No 405
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=68.83 E-value=47 Score=24.97 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=61.7
Q ss_pred HcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh
Q 048318 47 SLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119 (145)
Q Consensus 47 ~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~ 119 (145)
+.||.+. |..|...|-+...- .| +.+.-+--| +....+.++.+.+. +.+|+++=++-...+....+++.
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~--g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDA--GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhc--CC-EEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHc
Confidence 4599983 55566666665543 35 434332211 12345677777766 56898887888899999999999
Q ss_pred CCceee-----cCCCCHHHHHHHHHHHH
Q 048318 120 GLDLCH-----TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 120 g~~~~l-----~kP~~~~~L~~~i~~~~ 142 (145)
|+|+.+ .|--++-.+.+.++...
T Consensus 271 GadgVL~nSaIa~a~dPv~Ma~A~~~av 298 (326)
T PRK11840 271 GCDGVLMNTAIAEAKNPVLMARAMKLAV 298 (326)
T ss_pred CCCEEEEcceeccCCCHHHHHHHHHHHH
Confidence 999986 45566667776665544
No 406
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.73 E-value=28 Score=25.57 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=49.9
Q ss_pred ccEEEEecCCCC----C--CHHHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV----M--NGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~----~--~~~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.-. . +-.+.++.+|+..+. .+|. ..-.+.++..++++.|+|-++.-.++++++...+..+
T Consensus 159 sd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIe--VEv~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~ 234 (281)
T PRK06543 159 SDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVE--VEVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELV 234 (281)
T ss_pred CceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEE--EEeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHh
Confidence 777777765533 1 124566777776653 4554 4445778888999999999999999999999998754
No 407
>PRK01581 speE spermidine synthase; Validated
Probab=68.72 E-value=51 Score=25.32 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=44.5
Q ss_pred ceEEEEeCcHHHHHHHHHH--HH---Hc---CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC------HHHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMA--LK---SL---GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN------GIEATR 90 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~--L~---~~---g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~------~~~~~~ 90 (145)
.+|.++|-++...+..+.. |. .. +-.+. ...|+.+.+.... ..||+|++|..-|... ..++++
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~--~~YDVIIvDl~DP~~~~~~~LyT~EFy~ 252 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS--SLYDVIIIDFPDPATELLSTLYTSELFA 252 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC--CCccEEEEcCCCccccchhhhhHHHHHH
Confidence 4789999999988888852 21 11 22454 5667777665432 4699999997544321 245777
Q ss_pred HHHhcC
Q 048318 91 EIRSMG 96 (145)
Q Consensus 91 ~l~~~~ 96 (145)
.+++..
T Consensus 253 ~~~~~L 258 (374)
T PRK01581 253 RIATFL 258 (374)
T ss_pred HHHHhc
Confidence 776643
No 408
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.57 E-value=47 Score=26.56 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=38.9
Q ss_pred CCccEEEEecCCCCCC--HHHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 69 AKFDIVFIDKEMPVMN--GIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~~--~~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
...|++.+| .-++-+ ..+.++.+++..+. ++|+ ...-.+.+....+.++|||.+.+
T Consensus 253 aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~-aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 253 AGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVG-AGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred hCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEE-eccccCHHHHHHHHHcCCCEEEE
Confidence 469999999 333322 36788888887653 3333 34456788888999999998743
No 409
>PRK06801 hypothetical protein; Provisional
Probab=68.56 E-value=45 Score=24.57 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=47.6
Q ss_pred EcCHHHHHHHHHcCCCccEEEEecCCC-----C--CCHHHHHHHHHhcCCcceEEEEeCC-CCHHHHHHHHHhCCcee
Q 048318 55 AENGKEAVDLFRSGAKFDIVFIDKEMP-----V--MNGIEATREIRSMGIKIKIVGVTSL-NSEAEREAFMQAGLDLC 124 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~d~~~~-----~--~~~~~~~~~l~~~~~~~~iv~l~~~-~~~~~~~~~~~~g~~~~ 124 (145)
.++.+++.+.... -..|.+=+...-. . .-+++.++.+++.. ++|+|+-+++ ...+...++.+.|++.+
T Consensus 155 ~T~pe~a~~f~~~-tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 155 FTDPQLARDFVDR-TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKI 230 (286)
T ss_pred CCCHHHHHHHHHH-HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 4466888888865 4578777743111 1 24788899988754 5799887664 36667888999999877
No 410
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=68.45 E-value=26 Score=21.73 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=47.7
Q ss_pred eEEEEeC--cHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCcc-EEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 27 FALVVDD--DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFD-IVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 27 ~iLii~~--~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~d-lvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+|.++.. .......++..|...|..+....+..........-.+-| ++++...-...+..+.++..+++ .+++++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~--g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKER--GAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHc--CCeEEE
Confidence 3445444 344456667777788888877777666554433212224 33343322223345566666654 578899
Q ss_pred EeCCCCHHH
Q 048318 104 VTSLNSEAE 112 (145)
Q Consensus 104 l~~~~~~~~ 112 (145)
+|+..+...
T Consensus 93 iT~~~~~~l 101 (139)
T cd05013 93 ITDSANSPL 101 (139)
T ss_pred EcCCCCChh
Confidence 998776543
No 411
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=68.45 E-value=32 Score=28.21 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=40.1
Q ss_pred cccCCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EE---cCHHHHHHHHHcCCCccEEEEe
Q 048318 21 AKNLRLFALVVDDDCFIRTIHSMALKSLGFKVE-VA---ENGKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 21 ~~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~---~~~~~al~~~~~~~~~dlvl~d 77 (145)
.+.+.++|||......+-..+...|...|+++. .. .+.+.....+.. ..||+||-=
T Consensus 376 ~~~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~-~~pd~Vih~ 435 (668)
T PLN02260 376 PGKPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRN-VKPTHVFNA 435 (668)
T ss_pred CCCCCceEEEECCCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHh-hCCCEEEEC
Confidence 344567899999999999999999988898884 22 233433344444 579998843
No 412
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=68.37 E-value=45 Score=25.73 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=39.5
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCe---EE-EEcCHHHHHHHHH-cCCCccEEEEec
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFK---VE-VAENGKEAVDLFR-SGAKFDIVFIDK 78 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~~~~-~~~~~dlvl~d~ 78 (145)
.|.-+|-++...+..+..++.+|+. +. ...|..+.+.... .+..||+|++|.
T Consensus 245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 6899999999999999999887763 33 5567777765543 224699999984
No 413
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=68.10 E-value=5.9 Score=26.89 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 58 GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
.+.+++.+.. .+||+|=+ ||+ -...+++.+++.. ++|+|.=+--.+.++..+++++||.+.
T Consensus 106 l~~~~~~i~~-~~PD~vEi---lPg-~~p~vi~~i~~~~-~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIEQ-SKPDAVEI---LPG-VMPKVIKKIREET-NIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHH-HT-SEEEE---ESC-CHHHHHCCCCCCC-SS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHhh-cCCCEEEE---chH-HHHHHHHHHHHhc-CCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 3445556665 57998866 565 3445666665543 678875444478899999999999886
No 414
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=68.08 E-value=43 Score=24.24 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=37.6
Q ss_pred HHHHHHcCCeEEEEcC-------HHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 42 SMALKSLGFKVEVAEN-------GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 42 ~~~L~~~g~~v~~~~~-------~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
...++..||.+....+ .++..+.+.. ..||++++|.- ..+ .+..+.++.. ..+++++.+..
T Consensus 46 ~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~vV~D~y--~~~-~~~~~~~k~~--~~~l~~iDD~~ 113 (279)
T TIGR03590 46 IDLLLSAGFPVYELPDESSRYDDALELINLLEE-EKFDILIVDHY--GLD-ADWEKLIKEF--GRKILVIDDLA 113 (279)
T ss_pred HHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh-cCCCEEEEcCC--CCC-HHHHHHHHHh--CCeEEEEecCC
Confidence 4566788998875543 4456677766 57999999963 222 2345556543 33556666543
No 415
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.04 E-value=42 Score=24.09 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCcc-EEEEecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHH-HhCCceee
Q 048318 58 GKEAVDLFRSGAKFD-IVFIDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFM-QAGLDLCH 125 (145)
Q Consensus 58 ~~~al~~~~~~~~~d-lvl~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~-~~g~~~~l 125 (145)
..+..+.+.+ ...+ +++.|.+-.+ ...+++++.+++. ..+|+++-++-.+.+....++ ..|+++.+
T Consensus 154 ~~e~~~~~~~-~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 154 PLELAKEYEA-LGAGEILLNSIDRDGTMKGYDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred HHHHHHHHHH-cCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 4555566654 3455 6666664322 2457788888875 578999888888988999988 78999875
No 416
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.03 E-value=54 Score=25.31 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=49.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+..+.+++.++...+.+.. ..|+.+.... +....++...- ..+|.+++-..-. ......+...+...+...+|+
T Consensus 23 g~~v~vid~~~~~~~~~~~---~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~-~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 23 NNDVTVIDTDEERLRRLQD---RLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSD-ETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CCcEEEEECCHHHHHHHHh---hcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCCh-HHHHHHHHHHHHhcCCCeEEE
Confidence 3457788888776555443 2455555432 22333443322 3578888765321 122233444555556667777
Q ss_pred EeCCCCHHHHHHH---HHhCCceee
Q 048318 104 VTSLNSEAEREAF---MQAGLDLCH 125 (145)
Q Consensus 104 l~~~~~~~~~~~~---~~~g~~~~l 125 (145)
.+...+....... ...|++..+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 98 RVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred EECCccccchhhhhhhhcCCccEEE
Confidence 6654433112222 457888765
No 417
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.03 E-value=38 Score=24.82 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=45.1
Q ss_pred ccEEEEecCCCC-CCH-HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV-MNG-IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 71 ~dlvl~d~~~~~-~~~-~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
+|.+++..+.-. ..+ ...++..|+..+..+|-+ .. .+.++..++.+.|+|.+..-+++++++...++.
T Consensus 160 ~d~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~V-Ev-~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~ 229 (277)
T PRK05742 160 YDAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEV-EV-ESLDELRQALAAGADIVMLDELSLDDMREAVRL 229 (277)
T ss_pred cccEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 566666544321 122 234566666555555443 33 457778899999999999999999999887764
No 418
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.93 E-value=50 Score=24.88 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCcee------ecC-CCCHHHHHHHHHHHHh
Q 048318 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLC------HTK-PLSVDKILPLMEDLMK 143 (145)
Q Consensus 86 ~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~------l~k-P~~~~~L~~~i~~~~~ 143 (145)
++.++.+++... .+||+..++-.+.+.+.+.+.+||+.+ +.+ |.-..++..-+.+.++
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 456677776543 689999999999999999999999876 333 6666666666666554
No 419
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=67.92 E-value=19 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=32.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKE 60 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~ 60 (145)
++|.|||=..-....+++.|+..|+++....+.++
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~ 36 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEE 36 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHH
Confidence 56899999999999999999999999999988886
No 420
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=67.88 E-value=26 Score=24.17 Aligned_cols=100 Identities=13% Similarity=0.214 Sum_probs=58.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEE---cC-----HHHHHHHHHcCCCccEEEEecCCCCCCHHH-HHHHHHh--
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVA---EN-----GKEAVDLFRSGAKFDIVFIDKEMPVMNGIE-ATREIRS-- 94 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~---~~-----~~~al~~~~~~~~~dlvl~d~~~~~~~~~~-~~~~l~~-- 94 (145)
.++|++-.+.. +..+...|+..|+.|..+ .+ ..+..+.+.. ..+|+|++= ..++.+ +.+.+++
T Consensus 118 ~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~-~~~~~v~ft----S~~~~~~~~~~~~~~~ 191 (231)
T PF02602_consen 118 KRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDR-GEIDAVVFT----SPSAVRAFLELLKKNG 191 (231)
T ss_dssp EEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHH-TTTSEEEES----SHHHHHHHHHHSSGHH
T ss_pred CeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHc-CCCCEEEEC----CHHHHHHHHHHhHhhh
Confidence 46777766554 667888888888776532 22 3445666655 468988873 122333 3333332
Q ss_pred -cCCcceEEEEeCCCCHHHHHHHHHhCCce-eecCCCCHHHHH
Q 048318 95 -MGIKIKIVGVTSLNSEAEREAFMQAGLDL-CHTKPLSVDKIL 135 (145)
Q Consensus 95 -~~~~~~iv~l~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~L~ 135 (145)
...+.+++.++ +.....+.+.|... ++.+-.+.+.|+
T Consensus 192 ~~~~~~~~~~ig----~~ta~~l~~~g~~~~~va~~~~~~~lv 230 (231)
T PF02602_consen 192 ALLKRVPIVAIG----PRTAKALRELGFKVDIVAERPTIEALV 230 (231)
T ss_dssp HHHTTSEEEESS----HHHHHHHHHTT-SCSEEESSSSHHHHH
T ss_pred hhhhCCEEEEEC----HHHHHHHHHcCCCceEECCCCChhHhh
Confidence 23466666653 44455566888777 666666666654
No 421
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=67.85 E-value=47 Score=24.56 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=48.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCH--HHHHHHHHhcCCcceE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG--IEATREIRSMGIKIKI 101 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~--~~~~~~l~~~~~~~~i 101 (145)
.+|.-+|-++...+..+...+..|.. +. ...+..+..... . ..||+|++|- | ..| .++++.+....+. .|
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~-~~~D~Vv~dP--P-r~G~~~~~~~~l~~~~~~-~i 269 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-G-EVPDLVLVNP--P-RRGIGKELCDYLSQMAPR-FI 269 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-C-CCCeEEEECC--C-CCCccHHHHHHHHHcCCC-eE
Confidence 47899999999999999888877754 43 555666554322 2 3599999983 3 333 4666777665543 34
Q ss_pred EEEe
Q 048318 102 VGVT 105 (145)
Q Consensus 102 v~l~ 105 (145)
|.++
T Consensus 270 vyvs 273 (315)
T PRK03522 270 LYSS 273 (315)
T ss_pred EEEE
Confidence 4333
No 422
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=67.65 E-value=36 Score=25.49 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=46.7
Q ss_pred EcCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCce
Q 048318 55 AENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 55 ~~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~ 123 (145)
..+..+|++.... ...-|++++- |.+.-+++++.+++.. ++|+.+.--+.+-..+..+.+.|.-+
T Consensus 224 p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~-~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 224 PANRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEF-NLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcC-CCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 3466677665532 1358999996 4566889999999876 68999887777777777777766544
No 423
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.62 E-value=46 Score=24.40 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+.+++.+.+. ...++......+. .+......++..+.+. ..|++++-.. .+.-|..+++.+.. .+|+|+
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~---~~d~~v~ps~-~E~~~~~~~EAma~---g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS---IADLFLLPSE-KESFGLAALEAMAC---GVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH---hcCEEEeCCC-cCCCccHHHHHHHc---CCCEEE
Confidence 44555555433 2344445544443 2433333333333332 2577665432 23345555555543 567765
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+.... ..+....|..+++..|-+.+++...+..++.
T Consensus 300 -s~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 -SNAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -eCCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 33332 3445667888999999999999998887764
No 424
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.53 E-value=40 Score=23.61 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHH
Q 048318 40 IHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 40 ~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
.+.+.-...|..+. =+.+..|+...... .+|++=+ .| +.-|.+.++.++...+++|++. ++.-+.+...+++
T Consensus 100 ~v~~~~~~~~i~~iPG~~T~~E~~~A~~~--Gad~vkl---FPa~~~G~~~ik~l~~~~p~ip~~a-tGGI~~~N~~~~l 173 (213)
T PRK06552 100 ETAKICNLYQIPYLPGCMTVTEIVTALEA--GSEIVKL---FPGSTLGPSFIKAIKGPLPQVNVMV-TGGVNLDNVKDWF 173 (213)
T ss_pred HHHHHHHHcCCCEECCcCCHHHHHHHHHc--CCCEEEE---CCcccCCHHHHHHHhhhCCCCEEEE-ECCCCHHHHHHHH
Confidence 33334445565555 46688888877654 5788876 33 3457889999998888899875 5556678889999
Q ss_pred HhCCcee
Q 048318 118 QAGLDLC 124 (145)
Q Consensus 118 ~~g~~~~ 124 (145)
..|++.+
T Consensus 174 ~aGa~~v 180 (213)
T PRK06552 174 AAGADAV 180 (213)
T ss_pred HCCCcEE
Confidence 9998776
No 425
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=67.37 E-value=43 Score=24.31 Aligned_cols=70 Identities=20% Similarity=0.140 Sum_probs=44.3
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.+++-.+... .+-...++..|+..++..+|-++. .+.++...+.+.|+|.+..-|++++.+...++.+
T Consensus 148 ~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev-~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 148 SDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEV-ESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred ccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 455554433222 223345677777554333333433 3567788899999998888999999988877643
No 426
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=67.13 E-value=41 Score=23.62 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=33.9
Q ss_pred EEEEcCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCC
Q 048318 52 VEVAENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 52 v~~~~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~ 129 (145)
|....+.++++..... +...+.| +..+......+.++.+++..+++ +|=-..--+.+....+..+|++..+..-+
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~I--EITl~sp~a~e~I~~l~~~~p~~-lIGAGTVL~~~q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAI--EITLRTPAALEAIRALAKEFPEA-LIGAGTVLNPEQARQAIAAGAQFIVSPGL 94 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeE--EEecCCCCHHHHHHHHHHhCccc-EEccccccCHHHHHHHHHcCCCEEECCCC
Confidence 4455555555544321 0223333 22333334556666665544421 11111123555566666666655544333
Q ss_pred CHH
Q 048318 130 SVD 132 (145)
Q Consensus 130 ~~~ 132 (145)
+.+
T Consensus 95 ~~e 97 (211)
T COG0800 95 NPE 97 (211)
T ss_pred CHH
Confidence 333
No 427
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=67.05 E-value=38 Score=25.31 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 56 ENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 56 ~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
.+..+|++.... ...-|++++- |.+.-+++++.+++.. +.|+.+.--+.+-..+..+.+.|.-++
T Consensus 222 ~n~~eAlre~~~Di~EGAD~lMVK---Pal~YLDIi~~~k~~~-~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 222 ANSREALREVALDIAEGADMVMVK---PGMPYLDIIRRVKDEF-GVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 456677665532 1358999996 4566889999998866 789998877777777777777776544
No 428
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=67.00 E-value=43 Score=23.82 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCcc-EEEEecCC---CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh-CCceeec------C
Q 048318 59 KEAVDLFRSGAKFD-IVFIDKEM---PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA-GLDLCHT------K 127 (145)
Q Consensus 59 ~~al~~~~~~~~~d-lvl~d~~~---~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~-g~~~~l~------k 127 (145)
.+..+.+.. ..++ +++.++.- ..+..+++++.+++.. +.|+++-.+-.+.+...++++. |++..+. .
T Consensus 156 ~~~~~~~~~-~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEE-LGAGEILLTSMDRDGTKNGYDLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHH-cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 444455544 4566 45544331 2233467788887654 6899988888888888888874 9988764 3
Q ss_pred CCCHHHHHHHHH
Q 048318 128 PLSVDKILPLME 139 (145)
Q Consensus 128 P~~~~~L~~~i~ 139 (145)
-++.+++...++
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK02083 234 EITIGELKAYLA 245 (253)
T ss_pred CCCHHHHHHHHH
Confidence 566666665554
No 429
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=66.93 E-value=53 Score=24.81 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCeEEEEc--CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHH
Q 048318 40 IHSMALKSLGFKVEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 40 ~l~~~L~~~g~~v~~~~--~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
.++......+-.+.... +.++....+.. .|++++--...+.-+.-+++.+.. .+|+|.. .... ..+..
T Consensus 247 ~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~---aDv~v~pS~~~E~f~~~~lEAma~---G~PVI~s-~~gg---~~Eiv 316 (380)
T PRK15484 247 KVLEAAKRIGDRCIMLGGQPPEKMHNYYPL---ADLVVVPSQVEEAFCMVAVEAMAA---GKPVLAS-TKGG---ITEFV 316 (380)
T ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHh---CCEEEeCCCCccccccHHHHHHHc---CCCEEEe-CCCC---cHhhc
Confidence 34434334443443322 33444444432 577776433223334444555443 5787753 3322 23345
Q ss_pred HhCCcee-ecCCCCHHHHHHHHHHHHh
Q 048318 118 QAGLDLC-HTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 118 ~~g~~~~-l~kP~~~~~L~~~i~~~~~ 143 (145)
..|..+| +..|.+.+++...+.++++
T Consensus 317 ~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 317 LEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred ccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 5677888 5678999999999988764
No 430
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=66.89 E-value=55 Score=24.95 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=55.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv 102 (145)
.+|.-+|-++...+..+...+..|.. +. ...+..+.+... . ..||+|++|- |.. -..++++.+.+..|. .+|
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~-~~~D~vi~DP--Pr~G~~~~~l~~l~~~~p~-~iv 330 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-M-SAPELVLVNP--PRRGIGKELCDYLSQMAPK-FIL 330 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-C-CCCCEEEECC--CCCCCcHHHHHHHHhcCCC-eEE
Confidence 46899999999999999888877763 43 555666555322 2 3599999983 322 234666777665443 344
Q ss_pred EEeCCCCHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQA 119 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~ 119 (145)
..+....+...++...
T Consensus 331 -yvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 331 -YSSCNAQTMAKDIAEL 346 (374)
T ss_pred -EEEeCHHHHHHHHHHh
Confidence 4444444555555444
No 431
>PRK06444 prephenate dehydrogenase; Provisional
Probab=66.72 E-value=22 Score=24.55 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=24.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVE 53 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~ 53 (145)
++|.||+........+...|+..||.|.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 3688999999999999999999898764
No 432
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=66.66 E-value=29 Score=22.01 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHhcC-CcceEEEE--eCCCCHHHHHHHHHhCCceeecC
Q 048318 81 PVMNGIEATREIRSMG-IKIKIVGV--TSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 81 ~~~~~~~~~~~l~~~~-~~~~iv~l--~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
..-.+.+.....+... +++.+|-+ ++.-+...+..++..|||+.++-
T Consensus 10 ~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 10 CAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVA 59 (124)
T ss_pred CcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEe
Confidence 3344555555555433 34555544 55568999999999999999863
No 433
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.59 E-value=42 Score=23.51 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=4.4
Q ss_pred ccEEEEecC
Q 048318 71 FDIVFIDKE 79 (145)
Q Consensus 71 ~dlvl~d~~ 79 (145)
.-+|++|..
T Consensus 84 ipvV~i~~~ 92 (273)
T cd06292 84 LPVVLVNGR 92 (273)
T ss_pred CCEEEEcCC
Confidence 445555543
No 434
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.50 E-value=51 Score=26.41 Aligned_cols=97 Identities=5% Similarity=0.107 Sum_probs=48.7
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCCC---CCHHHHH---HHHHhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMPV---MNGIEAT---REIRSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~---~~~~~~~---~~l~~~~~~~~iv~l 104 (145)
--|....+.+...|...||..+.- . ...|+|+++. ..-. ......+ +.++...|...|++.
T Consensus 77 ~~N~~Dse~~~~~L~~~Gy~~~~~-----------~-~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~v~ 144 (509)
T PRK14327 77 QMNEHDTEVMAGIFEALGYEPTDD-----------T-EDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIGVC 144 (509)
T ss_pred CccHHHHHHHHHHHHHCcCEECCC-----------c-CCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 456667777777887778765531 1 2368888874 2211 1233333 333444556555544
Q ss_pred eCCCCHHH-HHHH-HHh-CCceeecCCCCHHHHHHHHHHH
Q 048318 105 TSLNSEAE-REAF-MQA-GLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 105 ~~~~~~~~-~~~~-~~~-g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+....... .... ... ++ +++.-+.....+...+...
T Consensus 145 GCmaq~~~~~~~~~~~~p~v-d~v~g~~~~~~l~~~l~~~ 183 (509)
T PRK14327 145 GCMSQEESVVNKILKKYQHV-DMIFGTHNIHRLPEILKEA 183 (509)
T ss_pred cchhcCcCchHHHHhcCCCC-CEEECCCCHHHHHHHHHHH
Confidence 33322211 0111 122 34 3445666666666665543
No 435
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=66.35 E-value=60 Score=25.20 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCC---CCCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 33 DDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMP---VMNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~---~~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
-|....+.+...|...||.++.- . ...|+|+++. ... +....+.++++++. ..+|| +++..
T Consensus 11 ~N~~ds~~~~~~l~~~g~~~~~~-----------~-~~aD~viinTC~v~~~a~~~~~~~i~~~~~~--~~~vv-vgGc~ 75 (430)
T TIGR01125 11 KNLVDSEVMLGILREAGYEVTPN-----------Y-EDADYVIVNTCGFIEDARQESIDTIGELADA--GKKVI-VTGCL 75 (430)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEeCCCccchHHHHHHHHHHHHHhc--CCCEE-EECCc
Confidence 35667788888998889887641 1 2479999983 222 22356666666654 34544 55554
Q ss_pred CHHHHHHHHH-h-CCceeecCCCCHHHHHHHHHH
Q 048318 109 SEAEREAFMQ-A-GLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 109 ~~~~~~~~~~-~-g~~~~l~kP~~~~~L~~~i~~ 140 (145)
......+++. . ++|. +..+-...++...+.+
T Consensus 76 a~~~pee~~~~~~~vd~-v~g~~~~~~l~~~~~~ 108 (430)
T TIGR01125 76 VQRYKEELKEEIPEVHA-ITGSGDVENILNAIES 108 (430)
T ss_pred cccchHHHHhhCCCCcE-EECCCCHHHHHHHHHH
Confidence 3333444443 2 5554 4567667777666544
No 436
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=66.25 E-value=53 Score=24.53 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCC
Q 048318 37 IRTIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNS 109 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~ 109 (145)
....++..++..|++++. ..+....+..+.. ..||+|++-.. ..+...+++++++.....+++......+
T Consensus 156 ~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~-~~pd~V~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 232 (351)
T cd06334 156 PIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRR-SGPDYVILWGW--GVMNPVAIKEAKRVGLDDKFIGNWWSGD 232 (351)
T ss_pred hHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHH-cCCCEEEEecc--cchHHHHHHHHHHcCCCceEEEeeccCc
Confidence 345666777788888652 1356666777766 57999987543 3467888999988776666654433333
Q ss_pred HHH
Q 048318 110 EAE 112 (145)
Q Consensus 110 ~~~ 112 (145)
...
T Consensus 233 ~~~ 235 (351)
T cd06334 233 EED 235 (351)
T ss_pred HHH
Confidence 333
No 437
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=65.90 E-value=54 Score=25.75 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=53.7
Q ss_pred EeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec-CCCC---CCHHHH---HHHHHhcCCcceEEE
Q 048318 31 VDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK-EMPV---MNGIEA---TREIRSMGIKIKIVG 103 (145)
Q Consensus 31 i~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~---~~~~~~---~~~l~~~~~~~~iv~ 103 (145)
+--|....+.+...|...||.++.- . ...|+++++. ..-+ ....+. ++.+++..|..++++
T Consensus 30 C~~N~~dse~~~~~l~~~G~~~~~~-----------~-~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv 97 (459)
T PRK14338 30 CQMNVSDSERLEAALQGVGYSPAER-----------P-EDADFIVLNSCSVRASAEERILGKLGELQRLKRQRPDTRIVL 97 (459)
T ss_pred CCCCHHHHHHHHHHHHHCcCEECCC-----------c-ccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4567888889999999999887641 1 2469999884 2222 222333 444455566766665
Q ss_pred EeCCCCHHHHHHH--HHh-CCceeecCCCCHHHHHHHH
Q 048318 104 VTSLNSEAEREAF--MQA-GLDLCHTKPLSVDKILPLM 138 (145)
Q Consensus 104 l~~~~~~~~~~~~--~~~-g~~~~l~kP~~~~~L~~~i 138 (145)
.+.... ..-.+. ... ++| ++..+-....+...+
T Consensus 98 ~GC~a~-~~~~~~~~~~~p~vd-~v~g~~~~~~i~~~~ 133 (459)
T PRK14338 98 WGCMVG-PNNQSIFAERLPMVD-HFVSPSAVDEVVALA 133 (459)
T ss_pred eCCccc-cChhHhhHhcCCCCc-EEECCccHHHHHHHH
Confidence 443332 222222 233 344 555677776666554
No 438
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=65.89 E-value=50 Score=24.20 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=58.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+.+++++.+.. +.++..+ ..+....-..+.++..+.+.. .|+.++-.. +.-|...++.+.. .+|+|...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~---ad~~v~ps~--e~~g~~~~Eama~---G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR---ARAFLFPAE--EDFGIVPVEAMAS---GTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh---CCEEEECCc--CCCCchHHHHHHc---CCCEEEeC
Confidence 556777776543 2333311 112222222345555555543 577776533 3334445555443 56887643
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
.... .+....|..+++..|-+.+++...+..++++
T Consensus 292 ~~~~----~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 292 KGGA----LETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CCCC----cceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 3222 2334567778888899999999999888754
No 439
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.86 E-value=38 Score=27.87 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=43.2
Q ss_pred CccEEEEec-CCCCCCHHHH-HHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGIEA-TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~~-~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+.++|+|- ++-..+.++. ++.+.+-..++.+|+.+.. ... ....+..-+.-|-.+|++.+++...+.+.+.
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd-~~k-il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD-PQK-VPVTVLSRCLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC-chh-hhHHHHHhceeeecCCCCHHHHHHHHHHHHH
Confidence 478999884 4433334443 2333332335556555533 222 3334666677788899999999999887664
No 440
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=65.85 E-value=41 Score=23.18 Aligned_cols=69 Identities=17% Similarity=0.045 Sum_probs=40.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHH---HHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGK---EAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~---~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~ 94 (145)
+.+|||......+...+...|...|+.+.... +.. .....+.. ...++.++..++.+.+. ..++..+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-AGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999888888888888888899887544 432 22233333 22345555555544333 234444443
No 441
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.73 E-value=49 Score=24.03 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHcCCCccEEEEecCC---CCCC----HHHHHHHHHhcCCcceEEEEeCCC-C-----HHHHHHHHHhCCceee
Q 048318 61 AVDLFRSGAKFDIVFIDKEM---PVMN----GIEATREIRSMGIKIKIVGVTSLN-S-----EAEREAFMQAGLDLCH 125 (145)
Q Consensus 61 al~~~~~~~~~dlvl~d~~~---~~~~----~~~~~~~l~~~~~~~~iv~l~~~~-~-----~~~~~~~~~~g~~~~l 125 (145)
|.+.+.....++++++.... +.-+ .+..+..+++.. +.||++-++.. . ......+...|+++++
T Consensus 153 A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~ 229 (266)
T PRK13398 153 AAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLM 229 (266)
T ss_pred HHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEE
Confidence 44445443467999988733 3333 334455555543 57877634443 3 4567778899998664
No 442
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.71 E-value=35 Score=27.19 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred CccEEEEec-CCCCCCHHHH-HHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGIEA-TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~~-~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+-++|+|- ++-..++++. ++.+.+ .+ ..++++....+...+...+..-+..|-.+|++.+++...+++++.
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEE-Pp-~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEE-PP-AHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhc-CC-CceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHH
Confidence 467888883 4444444443 344433 32 233333333334556667888888899999999999988887764
No 443
>PRK15482 transcriptional regulator MurR; Provisional
Probab=65.65 E-value=49 Score=23.95 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=49.9
Q ss_pred eEEEE--eCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEE
Q 048318 27 FALVV--DDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 27 ~iLii--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv 102 (145)
+|.++ +........+...|...|+.+....+..........-.+-|++|+ ...++ .+..+.++..+++ .+++|
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~-iS~sg~t~~~~~~~~~a~~~--g~~iI 213 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIA-ISYSGSKKEIVLCAEAARKQ--GATVI 213 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEE-EeCCCCCHHHHHHHHHHHHC--CCEEE
Confidence 34444 445666677777787889888876665543333322122355443 23333 3345666666665 58899
Q ss_pred EEeCCCCHHHH
Q 048318 103 GVTSLNSEAER 113 (145)
Q Consensus 103 ~l~~~~~~~~~ 113 (145)
.+|+.......
T Consensus 214 ~IT~~~~s~la 224 (285)
T PRK15482 214 AITSLADSPLR 224 (285)
T ss_pred EEeCCCCCchH
Confidence 99998776654
No 444
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=65.60 E-value=34 Score=22.12 Aligned_cols=109 Identities=12% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcC--HHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGF--KVEVAEN--GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.+..+++++ +......+....+..+. .+..... .++....+.. .|++++=... +.-|..+++.+.. .+
T Consensus 46 ~~~~l~i~G-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~---~di~v~~s~~-e~~~~~~~Ea~~~---g~ 117 (172)
T PF00534_consen 46 PNYKLVIVG-DGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS---SDIFVSPSRN-EGFGLSLLEAMAC---GC 117 (172)
T ss_dssp TTEEEEEES-HCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH---TSEEEE-BSS-BSS-HHHHHHHHT---T-
T ss_pred CCeEEEEEc-cccccccccccccccccccccccccccccccccccccc---ceeccccccc-ccccccccccccc---cc
Confidence 345566666 33333345555555443 2443333 3355555543 5777765443 4445566666554 56
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+|+ +... ...+....+..+++..|.+.+++...|.+++..
T Consensus 118 pvI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 118 PVIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp EEEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ceee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 6663 4422 234567778889999999999999999988753
No 445
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.48 E-value=37 Score=22.55 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=29.8
Q ss_pred CHHHHHHHHHc--CCCccEEEEecCCCCC-----------CHHHHHHHHHhcCCcceEEEEeC
Q 048318 57 NGKEAVDLFRS--GAKFDIVFIDKEMPVM-----------NGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 57 ~~~~al~~~~~--~~~~dlvl~d~~~~~~-----------~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
+..+.++.+.. ..+||+|++-+...|. +-.++++.+++..+.++|++++.
T Consensus 52 t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 52 TSADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred CHHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 45555555542 2579999985433331 12245566666567888887764
No 446
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=65.32 E-value=57 Score=24.64 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHcCCCccEEEEec---CCCC--CCH--HHHHHHHHhcCCcceEEEEeCCCCH------HHHHHHHHhCCceee
Q 048318 61 AVDLFRSGAKFDIVFIDK---EMPV--MNG--IEATREIRSMGIKIKIVGVTSLNSE------AEREAFMQAGLDLCH 125 (145)
Q Consensus 61 al~~~~~~~~~dlvl~d~---~~~~--~~~--~~~~~~l~~~~~~~~iv~l~~~~~~------~~~~~~~~~g~~~~l 125 (145)
+.+.+......+++++.. ..+. .+. +..+..+++. .+.|||+.++.... .....|...||++++
T Consensus 219 A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~-~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGli 295 (335)
T PRK08673 219 AAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKL-THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLI 295 (335)
T ss_pred HHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHh-cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEE
Confidence 444454434679999986 3322 222 3344555653 36899887777544 567788899999665
No 447
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.19 E-value=43 Score=24.68 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=45.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHH
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~ 88 (145)
.+.+|+|+......-.-+..+|...|..|+.+.+...-+...-+ ..|+|+.-..-|..-..++
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~--~ADIvV~AvG~p~~i~~~~ 218 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQ--NADIVCVGVGKPDLIKASM 218 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH--hCCEEEEecCCCCcCCHHH
Confidence 46789999999999999999999889888866544443433222 3699999887666544433
No 448
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=64.99 E-value=43 Score=23.12 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=34.9
Q ss_pred ccEE-EEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 71 FDIV-FIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 71 ~dlv-l~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+ ++|....-....+.++.+++. ..+||++-..-.+......+...|++.++
T Consensus 45 A~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 45 AAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEE
Confidence 4433 333333333456777887764 36788865433566678889999999997
No 449
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=64.88 E-value=53 Score=24.07 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=52.6
Q ss_pred EEEeCcHH---HHHHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 29 LVVDDDCF---IRTIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 29 Lii~~~~~---~~~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
++..+++. ....++..++..|..+.. ..+....+..+.. ..||+|++-.. ..+...+++.+++...+
T Consensus 140 ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~-~~~d~v~~~~~--~~~~~~~~~~~~~~g~~ 216 (340)
T cd06349 140 ILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRD-ANPDAIILISY--YNDGAPIARQARAVGLD 216 (340)
T ss_pred EEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHh-cCCCEEEEccc--cchHHHHHHHHHHcCCC
Confidence 34444443 345666677777877652 2356666777766 57999998653 34577888998887777
Q ss_pred ceEEEEeCCCCHHHHH
Q 048318 99 IKIVGVTSLNSEAERE 114 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~ 114 (145)
.+++..+...+.....
T Consensus 217 ~~~~~~~~~~~~~~~~ 232 (340)
T cd06349 217 IPVVASSSVYSPKFIE 232 (340)
T ss_pred CcEEccCCcCCHHHHH
Confidence 7876554444444433
No 450
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=64.83 E-value=47 Score=23.43 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCeEE-EEcCHHHHHHHHHcCCCccEEEE---ec----CCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhC
Q 048318 49 GFKVE-VAENGKEAVDLFRSGAKFDIVFI---DK----EMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 49 g~~v~-~~~~~~~al~~~~~~~~~dlvl~---d~----~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
|.... =+++.+|++..... .+|+|=. .+ ..+..+.+++++.+.+ ..+++|.=....++.....+++.|
T Consensus 127 ~~l~MAD~St~ee~l~a~~~--G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 127 GQLAMADCSTFEEGLNAHKL--GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CcEEEeccCCHHHHHHHHHc--CCcEEecccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 43333 57889998877654 4776522 11 2234567899999887 467888888889999999999999
Q ss_pred CceeecC-CCC-HHHHHHHHHHH
Q 048318 121 LDLCHTK-PLS-VDKILPLMEDL 141 (145)
Q Consensus 121 ~~~~l~k-P~~-~~~L~~~i~~~ 141 (145)
++..++- -++ ++++.......
T Consensus 203 a~aVvVGsAITRp~~It~~F~~~ 225 (229)
T COG3010 203 ADAVVVGSAITRPEEITQWFVDA 225 (229)
T ss_pred CeEEEECcccCCHHHHHHHHHHH
Confidence 9999765 232 45554444433
No 451
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.81 E-value=48 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCeEEEEcCH--HHHHHHHHcCCCccEEEE
Q 048318 38 RTIHSMALKSLGFKVEVAENG--KEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~~--~~al~~~~~~~~~dlvl~ 76 (145)
...++..+++.||.+..+... .+.++.+.. ..+|-+++
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~-~~~dgiii 62 (283)
T cd06279 23 LAGVAEVLDAAGVNLLLLPASSEDSDSALVVS-ALVDGFIV 62 (283)
T ss_pred HHHHHHHHHHCCCEEEEecCccHHHHHHHHHh-cCCCEEEE
Confidence 334444555556555533321 233333333 34554444
No 452
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=64.60 E-value=38 Score=22.32 Aligned_cols=51 Identities=22% Similarity=0.105 Sum_probs=34.4
Q ss_pred CCceEEEEeCcHHH---------HHHHHHHHHHcC-CeEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 24 LRLFALVVDDDCFI---------RTIHSMALKSLG-FKVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 24 ~~~~iLii~~~~~~---------~~~l~~~L~~~g-~~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
.++.|.|++.|... ...+...|+..+ +.... .+.+++.+.+.. ..++.+++
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~-g~~~~~iv 102 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLAD-GKYYMVIT 102 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHc-CcEEEEEE
Confidence 46677778777654 566666776543 44443 488999999988 46776664
No 453
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=64.57 E-value=13 Score=26.64 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=29.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
+.+|.++|=|......+...-+..|+.+. ...|....+..-.. ..+|+++.|-
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~-~~fD~f~TDP 120 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELR-GKFDVFFTDP 120 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTS-S-BSEEEE--
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHh-cCCCEEEeCC
Confidence 45788888888888888888888887766 33355554443223 4699999985
No 454
>PLN02316 synthase/transferase
Probab=64.42 E-value=1e+02 Score=27.21 Aligned_cols=113 Identities=7% Similarity=-0.068 Sum_probs=59.8
Q ss_pred CceEEEEeCc--HHHHHHHHHHHHHcCC----eEEEEcCHHHHH-HHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC
Q 048318 25 RLFALVVDDD--CFIRTIHSMALKSLGF----KVEVAENGKEAV-DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97 (145)
Q Consensus 25 ~~~iLii~~~--~~~~~~l~~~L~~~g~----~v~~~~~~~~al-~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~ 97 (145)
..+++|+++. +.....++.+....|. .+...-...+.+ ..+.. ..|++++- +..+.=|+..+..++.
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya--aADiflmP-S~~EP~GLvqLEAMa~--- 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA--GADFILVP-SIFEPCGLTQLTAMRY--- 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH--hCcEEEeC-CcccCccHHHHHHHHc---
Confidence 3556666653 3334555555544332 233222233333 23332 36887775 3334456666666664
Q ss_pred cceEEEEeCCCCHHHHHHH---------HHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 98 KIKIVGVTSLNSEAEREAF---------MQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~---------~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+|+|+-....-.+.+.+. ...+..+|+..|.+++.|...|.+++.
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAIS 997 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3444443222222222221 011478999999999999999888764
No 455
>PRK08185 hypothetical protein; Provisional
Probab=64.31 E-value=55 Score=24.08 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred EcCHHHHHHHHHcCCCccEEEE-------------ecCCCCCCHHHHHHHHHhcCCcceEEEEeCCC-CHHHHHHHHHhC
Q 048318 55 AENGKEAVDLFRSGAKFDIVFI-------------DKEMPVMNGIEATREIRSMGIKIKIVGVTSLN-SEAEREAFMQAG 120 (145)
Q Consensus 55 ~~~~~~al~~~~~~~~~dlvl~-------------d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~-~~~~~~~~~~~g 120 (145)
..+.+++.+.... -..|.+-+ ...+. +++++.+++.. ++|+|+.++.. .++....+...|
T Consensus 148 ~t~peea~~f~~~-TgvD~LAvaiGt~HG~y~~~~kp~L~----~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 148 YTDPEQAEDFVSR-TGVDTLAVAIGTAHGIYPKDKKPELQ----MDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCHHHHHHHHHh-hCCCEEEeccCcccCCcCCCCCCCcC----HHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCC
Q ss_pred Ccee
Q 048318 121 LDLC 124 (145)
Q Consensus 121 ~~~~ 124 (145)
+..+
T Consensus 222 I~Ki 225 (283)
T PRK08185 222 VGKI 225 (283)
T ss_pred CeEE
No 456
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=64.30 E-value=54 Score=24.32 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=38.4
Q ss_pred ccEEEEecC--CCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 71 FDIVFIDKE--MPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 71 ~dlvl~d~~--~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+.+|++|-- +.......+++.+.+..+.+.+|+.+. +.......+..-+..+-.+|.+.+++...+...++
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~--~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT--EPHKIPATILSRCQRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC--CHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH
Confidence 468888841 221112234444433233444444442 33333444555556666788999999888876554
No 457
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.12 E-value=65 Score=25.62 Aligned_cols=72 Identities=8% Similarity=0.092 Sum_probs=42.3
Q ss_pred CccEEEEec-CCCCCCHHH-HHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGIE-ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~-~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+-++++|- ++...++++ +++.+.+-++++.+|+.+ . +.......+..-+.-+-.+|++.+++...+.+.++
T Consensus 119 ~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t-t-~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 119 KYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT-T-EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred CeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE-C-CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHH
Confidence 456888884 333333433 344444433344444333 2 23334445555566777889999999988887665
No 458
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=63.96 E-value=34 Score=22.92 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=39.6
Q ss_pred CccEEEEec-CCCCCCH-HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 70 KFDIVFIDK-EMPVMNG-IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~-~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
.+-++++|- +--..+. -.+++.+.+..+.+-+|+++.. ......++..-+.-+-.+|.+.+++...+.+
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~--~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS--PEKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC--hHhChHHHHhhcEEeeCCCCCHHHHHHHHHH
Confidence 456888884 1111122 2344555443334555555542 2445555666667777889999998877754
No 459
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.95 E-value=40 Score=28.11 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=45.5
Q ss_pred CccEEEEe-cCCCCCCHHH-HHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 70 KFDIVFID-KEMPVMNGIE-ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 70 ~~dlvl~d-~~~~~~~~~~-~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
.+.++|+| .++-...+.+ +++.+.+-..++.+|+.+.. .. .....+..-+.-|-.+|++.+++...+.+++.+
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd-~~-kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD-PQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC-hH-hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 47789988 4444444554 34444443345666655533 22 233344466677778999999999999887753
No 460
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.86 E-value=71 Score=26.15 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=44.6
Q ss_pred CccEEEEec-CCCCCCHHHH-HHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGIEA-TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~~-~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+.++|+|- ++-..++++. ++.+.+-..++.+|+++. +...+...+..-+.-|=.+|++.+++...+.+++.
T Consensus 118 ~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt--e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT--EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC--ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 467888884 4444445543 344443333555555553 23344455666677777889999999988887664
No 461
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=63.83 E-value=17 Score=26.35 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 86 ~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
++.++.+++..+ ++|++....-.+.+...+++..|++.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 566778877654 7899998888899999999999988763
No 462
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=63.82 E-value=53 Score=24.29 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=51.5
Q ss_pred cCCceEEEEeCcHHHH-HHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC--CCC-----CHHHHHHHHHh
Q 048318 23 NLRLFALVVDDDCFIR-TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM--PVM-----NGIEATREIRS 94 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~--~~~-----~~~~~~~~l~~ 94 (145)
.++.+|.+.|..|... ..+.+.|.+.|..++...+..-+. +-. ..|.|+++.+- .++ -|--.+...-+
T Consensus 139 ~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~--~m~--~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak 214 (301)
T TIGR00511 139 GKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRY--FMK--EVDHVVVGADAITANGALINKIGTSQLALAAR 214 (301)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHH--HHH--hCCEEEECccEEecCCCEEEHHhHHHHHHHHH
Confidence 3567888998888654 556777888899999777665443 223 38999987643 222 24444444433
Q ss_pred cCCcceEEEEeCC
Q 048318 95 MGIKIKIVGVTSL 107 (145)
Q Consensus 95 ~~~~~~iv~l~~~ 107 (145)
..++|+++++..
T Consensus 215 -~~~vPv~V~a~~ 226 (301)
T TIGR00511 215 -EARVPFMVAAET 226 (301)
T ss_pred -HhCCCEEEEccc
Confidence 337888887653
No 463
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=63.73 E-value=58 Score=24.14 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=44.4
Q ss_pred ceEEEEeCcH----HHHHHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVVDDDC----FIRTIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~----~~~~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.++.++..+. ...+.++..+++.|.+++. ..+....+..+.. ..||+|++-. ...+...+++++++
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~-~~pd~v~~~~--~~~~~~~~~~~~~~ 210 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKA-AKPDVVVSTV--NGDSNVAFFKQLKA 210 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHH-hCCCEEEEec--cCCchHHHHHHHHH
Confidence 4565554443 4446666778888888653 2244555556665 5799998743 34467788899988
Q ss_pred cCCc
Q 048318 95 MGIK 98 (145)
Q Consensus 95 ~~~~ 98 (145)
....
T Consensus 211 ~G~~ 214 (348)
T cd06355 211 AGIT 214 (348)
T ss_pred cCCC
Confidence 6543
No 464
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=63.72 E-value=54 Score=23.78 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=52.8
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec---------
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT--------- 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~--------- 126 (145)
+.++..+.......+|.|++.=.-.+ .-.++.++.+++..+.+|+ ++++.-+.+...++++. +|++++
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pv-llggGvt~eNv~e~l~~-adGviVgS~~K~~G~ 235 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPV-LAGSGVNLENVEELLSI-ADGVIVATTIKKDGV 235 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeE-EEECCCCHHHHHHHHhh-CCEEEECCCcccCCc
Confidence 45554443333234898777643332 3468888898876667786 57888888888888875 655542
Q ss_pred --CCCCHHHHHHHHHHH
Q 048318 127 --KPLSVDKILPLMEDL 141 (145)
Q Consensus 127 --kP~~~~~L~~~i~~~ 141 (145)
.|.+.+.+.+.++.+
T Consensus 236 ~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 236 FNNFVDQARVSQFVEKV 252 (257)
T ss_pred cCCCcCHHHHHHHHHHH
Confidence 257776666655544
No 465
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=63.37 E-value=58 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCcc-EEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 59 KEAVDLFRSGAKFD-IVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 59 ~~al~~~~~~~~~d-lvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
.+.++.+++ ..++ -+++|+...+..... ++.+.+...+
T Consensus 214 ~~iVk~Lr~-~~~~~~I~~DLK~~Di~~~v-v~~~a~aGAD 252 (391)
T PRK13307 214 LEVISKIRE-VRPDAFIVADLKTLDTGNLE-ARMAADATAD 252 (391)
T ss_pred HHHHHHHHH-hCCCCeEEEEecccChhhHH-HHHHHhcCCC
Confidence 444555544 2244 466666665544332 4444444433
No 466
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=63.27 E-value=52 Score=23.47 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=48.0
Q ss_pred eEEEEeCcHHH-HHHHHHHHHHcCCeEEEE-------------cCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHH
Q 048318 27 FALVVDDDCFI-RTIHSMALKSLGFKVEVA-------------ENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATR 90 (145)
Q Consensus 27 ~iLii~~~~~~-~~~l~~~L~~~g~~v~~~-------------~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~ 90 (145)
||-++...... .+.+...|+..||+|... -+.+...+.+.+ ...+|.|++.+. ++..++++.
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT--nLrt~~vi~ 199 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT--ALRAATCAQ 199 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC--CchhHHHHH
Confidence 67777776544 478888899999998643 233444444431 145888888754 567888888
Q ss_pred HHHhcCCcceEE
Q 048318 91 EIRSMGIKIKIV 102 (145)
Q Consensus 91 ~l~~~~~~~~iv 102 (145)
.+.+. ...|++
T Consensus 200 ~lE~~-lGkPVl 210 (239)
T TIGR02990 200 RIEQA-IGKPVV 210 (239)
T ss_pred HHHHH-HCCCEE
Confidence 88654 255664
No 467
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=63.20 E-value=45 Score=25.51 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=48.5
Q ss_pred ceEEEEeCcH----HHHHHHHHHHHHcCCeEE---E----EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVVDDDC----FIRTIHSMALKSLGFKVE---V----AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~----~~~~~l~~~L~~~g~~v~---~----~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.++.+|..|- +....++.+++..|.++. . .++....++.+.. ..||+|+.-+. +.+...|.++++.
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~-~~Pd~V~stlv--G~s~~aF~r~~~~ 211 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKA-AKPDFVFSTLV--GDSNVAFYRAYAA 211 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHH-HT-SEEEEE----TTCHHHHHHHHHH
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHh-hCCCEEEEeCc--CCcHHHHHHHHHH
Confidence 6788888875 455677777877776654 2 3456666777776 57999998654 6678899999987
Q ss_pred cCC---cceEEEE
Q 048318 95 MGI---KIKIVGV 104 (145)
Q Consensus 95 ~~~---~~~iv~l 104 (145)
... .+||+-+
T Consensus 212 aG~~~~~~Pi~S~ 224 (363)
T PF13433_consen 212 AGLDPERIPIASL 224 (363)
T ss_dssp HH-SSS---EEES
T ss_pred cCCCcccCeEEEE
Confidence 432 4666544
No 468
>PRK00955 hypothetical protein; Provisional
Probab=63.18 E-value=86 Score=25.92 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=67.0
Q ss_pred ccCCceEEEEe------CcHHHHHHHHHHHHHcCCeEEEEcCH--HHHHHHHHcCCCccEEEE-ecC-------------
Q 048318 22 KNLRLFALVVD------DDCFIRTIHSMALKSLGFKVEVAENG--KEAVDLFRSGAKFDIVFI-DKE------------- 79 (145)
Q Consensus 22 ~~~~~~iLii~------~~~~~~~~l~~~L~~~g~~v~~~~~~--~~al~~~~~~~~~dlvl~-d~~------------- 79 (145)
++....|++|. ..+.-...+...|+..||.|-..... ...-+...- ..|++.+. ...
T Consensus 10 gw~~~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~-g~P~l~~~vs~g~~dsmv~~yt~~~ 88 (620)
T PRK00955 10 GWDELDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL-GKPRLFFLVSAGNMDSMVNHYTASK 88 (620)
T ss_pred CCCccCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh-CCCcEEEEeccccHHHHHhhcchhh
Confidence 45556666663 33445688889999999999865532 222222222 35888774 110
Q ss_pred --------C--------CCCCHHHHHHHHHhcCCcceEEEEeCCCCHH-------HH-----H-HHHHhCCceeecCCCC
Q 048318 80 --------M--------PVMNGIEATREIRSMGIKIKIVGVTSLNSEA-------ER-----E-AFMQAGLDLCHTKPLS 130 (145)
Q Consensus 80 --------~--------~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~-------~~-----~-~~~~~g~~~~l~kP~~ 130 (145)
- |+.....+++.+++..|++||| +++....- .. . .+...++ ||++.--.
T Consensus 89 ~~r~~d~ytpgg~~~~rpdra~i~y~~~ik~~~p~~~Iv-lGG~eaS~rr~~hyd~w~~~~~~siL~d~~a-D~vv~GeG 166 (620)
T PRK00955 89 KLRSKDAYSPGGKMGLRPDRATIVYCNKIKEAYPDVPII-IGGIEASLRRFAHYDYWSDKVRRSILIDSGA-DLLVYGMG 166 (620)
T ss_pred hcccccccCCCCccCCCcchHHHHHHHHHHHHCCCCcEE-eCChhhhccccccchhhhhhhhHHHhhccCC-CEEEECCc
Confidence 0 1112345578888888999876 44442221 11 1 1345556 66667666
Q ss_pred HHHHHHHHHHHH
Q 048318 131 VDKILPLMEDLM 142 (145)
Q Consensus 131 ~~~L~~~i~~~~ 142 (145)
...+...++++.
T Consensus 167 E~t~~eL~~~L~ 178 (620)
T PRK00955 167 EKPIVEIARRLK 178 (620)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 469
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=62.94 E-value=26 Score=23.37 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHH-HHHHHHHcCCCccEEEEecCCCC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGK-EAVDLFRSGAKFDIVFIDKEMPV 82 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~-~al~~~~~~~~~dlvl~d~~~~~ 82 (145)
.+.+++++......-.-+..+|.+.|..|+.+.... +..+.++ .-|+|+.-..-|.
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~---~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR---RADIVVSAVGKPN 91 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT---TSSEEEE-SSSTT
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee---eccEEeeeecccc
Confidence 456899999999999999999999999998665433 3333333 3689988876554
No 470
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=62.89 E-value=61 Score=24.14 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCH------HHHHHHHHcCCCccEEEEec
Q 048318 35 CFIRTIHSMALKSLGFKVEVAENG------KEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~~~~~~------~~al~~~~~~~~~dlvl~d~ 78 (145)
......+...++..||.+..+.+. .++++.+.. ..+|-+|+--
T Consensus 74 ~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~-~~vdGiIi~~ 122 (333)
T COG1609 74 AEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQ-KRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEec
Confidence 344556666677778887754422 234445554 4577666543
No 471
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=62.86 E-value=61 Score=24.10 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=51.9
Q ss_pred cCCceEEEEeCcHHHH-HHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCC--CCC-----CHHHHHHHHHh
Q 048318 23 NLRLFALVVDDDCFIR-TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEM--PVM-----NGIEATREIRS 94 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~--~~~-----~~~~~~~~l~~ 94 (145)
.++.+|.+.|..|... ..+.+.|.+.|..++...+..-+.-+ . ..|.||++.+- .++ .|--.+..+-+
T Consensus 144 ~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m--~--~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak 219 (310)
T PRK08535 144 GKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM--K--DVDKVVVGADAITANGAVINKIGTSQIALAAH 219 (310)
T ss_pred CCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH--H--hCCEEEECccEEecCCCEEeHHhHHHHHHHHH
Confidence 3567889999888754 55667788889999977775544322 3 38999987643 222 24444444433
Q ss_pred cCCcceEEEEeCC
Q 048318 95 MGIKIKIVGVTSL 107 (145)
Q Consensus 95 ~~~~~~iv~l~~~ 107 (145)
. ..+|+++++..
T Consensus 220 ~-~~vPv~V~a~~ 231 (310)
T PRK08535 220 E-ARVPFMVAAET 231 (310)
T ss_pred H-hCCCEEEeccc
Confidence 3 37888887653
No 472
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.85 E-value=57 Score=23.81 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCHHHHHH--------HHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 37 IRTIHSMALKSLGFKVEVAENGKEAVD--------LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~~~~al~--------~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
....+...|+..|+++.......+... .+.. ..+|++++= ++||. +++.++.....+|++.+..
T Consensus 17 ~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~i----GGDGT-lL~a~~~~~~~~pi~gIn~-- 88 (277)
T PRK03708 17 LAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE-MDVDFIIAI----GGDGT-ILRIEHKTKKDIPILGINM-- 88 (277)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc-cCCCEEEEE----eCcHH-HHHHHHhcCCCCeEEEEeC--
Confidence 345555667778888776533221111 1111 247776662 55663 2333332233678877654
Q ss_pred CHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 109 SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|-.+|+ +.++++++...+.++.++
T Consensus 89 -----------G~lGFl-~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 89 -----------GTLGFL-TEVEPEETFFALSRLLEG 112 (277)
T ss_pred -----------CCCCcc-ccCCHHHHHHHHHHHHcC
Confidence 323554 466778888888877754
No 473
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=62.82 E-value=20 Score=25.53 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCceEEEEeCcHHH--HHHHHHHHHHcC----CeEEEE---cCHHHHHHHHHcCCCccEEEEecC
Q 048318 24 LRLFALVVDDDCFI--RTIHSMALKSLG----FKVEVA---ENGKEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 24 ~~~~iLii~~~~~~--~~~l~~~L~~~g----~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~ 79 (145)
.+.+|.++|-||.. ..+-++..+... +.|..+ ...+++++.... ..||+||+|..
T Consensus 29 ~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~-~~~d~VlvDle 92 (231)
T PF07015_consen 29 RGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEA-SGFDFVLVDLE 92 (231)
T ss_pred CCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHh-cCCCEEEEeCC
Confidence 34577888766643 344333333221 223222 233444444443 34788888874
No 474
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=62.81 E-value=59 Score=23.90 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 39 TIHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
..++..++..|+.+.. ..+....+..+.. ..+|+|++... ..+...+++.+++.....+++.....
T Consensus 162 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~-~~~d~v~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~ 234 (344)
T cd06345 162 AGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKA-ADPDVIIAGFS--GNVGVLFTQQWAEQKVPIPTIGISVE 234 (344)
T ss_pred HHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHh-cCCCEEEEeec--CchHHHHHHHHHHcCCCCceEEecCC
Confidence 4445666677877653 2355666666766 57999999764 34577788888886655566554433
No 475
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=62.67 E-value=56 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCce
Q 048318 56 ENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 56 ~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~ 123 (145)
.+..+|++.... ...-|++++- |.+.-+++++.+++.. ++|+.+.--+.+-..+..|.+.|.-+
T Consensus 217 an~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~-~~PvaaYqVSGEYaMikaAa~~G~id 282 (314)
T cd00384 217 ANRREALREVELDIEEGADILMVK---PALAYLDIIRDVRERF-DLPVAAYNVSGEYAMIKAAAKNGWID 282 (314)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCcc
Confidence 366677766532 1358999996 4566889999999866 88999887777777777777766543
No 476
>PRK13561 putative diguanylate cyclase; Provisional
Probab=62.62 E-value=60 Score=26.46 Aligned_cols=103 Identities=15% Similarity=0.259 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCeEEE--EcCHHHHHHHHHc--CCCccEEEEecCCCC-C-CHHHHHHHHHh--cCCcceEEEEeC
Q 048318 35 CFIRTIHSMALKSLGFKVEV--AENGKEAVDLFRS--GAKFDIVFIDKEMPV-M-NGIEATREIRS--MGIKIKIVGVTS 106 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~--~~~~dlvl~d~~~~~-~-~~~~~~~~l~~--~~~~~~iv~l~~ 106 (145)
..........|++.||.+.. +.++-..+..+.. .-++|.|=+|-.+-. . +...+++.+.. +..++.+| ..+
T Consensus 533 ~~~~~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~vi-Aeg 611 (651)
T PRK13561 533 PHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVI-AEG 611 (651)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEE-Eec
Confidence 33444555677888988764 5555566666542 146999999853321 1 12345555543 22345544 455
Q ss_pred CCCHHHHHHHHHhCCce----eecCCCCHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDL----CHTKPLSVDKILPLM 138 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i 138 (145)
-.+.+....+.+.|++. |+.||...+++.+..
T Consensus 612 VE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~~ 647 (651)
T PRK13561 612 VETEAQRDWLLKAGVGIAQGFLFARALPIEIFEERY 647 (651)
T ss_pred CCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHHh
Confidence 56777788888888864 478899999986643
No 477
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=62.60 E-value=52 Score=23.26 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEe-cCCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHHHHH
Q 048318 44 ALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFID-KEMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 44 ~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d-~~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~~~~ 116 (145)
.|+..|.. ++.+-+..+++.....+..|=-.+++ +.-.+.||.++++.++. ....+.|+ .++..+.....++
T Consensus 100 ~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkIL-aAS~r~~~~v~~a 178 (222)
T PRK12656 100 TLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKIL-AASFKNVAQVNKA 178 (222)
T ss_pred HHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEE-EEecCCHHHHHHH
Confidence 34555644 34566777777666543222122222 22235688877776654 34456554 6788889999999
Q ss_pred HHhCCceeec
Q 048318 117 MQAGLDLCHT 126 (145)
Q Consensus 117 ~~~g~~~~l~ 126 (145)
...|++.+=.
T Consensus 179 ~~~G~d~vTv 188 (222)
T PRK12656 179 FALGAQAVTA 188 (222)
T ss_pred HHcCCCEEec
Confidence 9999987733
No 478
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=62.40 E-value=1.1e+02 Score=27.00 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=63.7
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCe-------------EEEEcCHHHHHHHHHcCC-CccEEEEecCCCCCCHHHH
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFK-------------VEVAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIEA 88 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~-------------v~~~~~~~~al~~~~~~~-~~dlvl~d~~~~~~~~~~~ 88 (145)
..+.+|+|+..-..-......+.+..++. ++.+....+..+.+.... ....+-+|.. +-.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~----D~e~L 642 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS----DSESL 642 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC----CHHHH
Confidence 34668999998766665555554444444 555553333333333312 2345666643 23344
Q ss_pred HHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 89 ~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
.+.++. .++-|+.+....+...+..|+++|..-+-.| ++.++.......
T Consensus 643 ~~~v~~--~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~ 691 (1042)
T PLN02819 643 LKYVSQ--VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSK 691 (1042)
T ss_pred HHhhcC--CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHH
Confidence 444443 4655555555568888999999998777666 556655544443
No 479
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=62.39 E-value=73 Score=24.82 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=57.6
Q ss_pred CceEEEEeCcHHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCCCCHHHHHHHHHh----cC
Q 048318 25 RLFALVVDDDCFI---RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPVMNGIEATREIRS----MG 96 (145)
Q Consensus 25 ~~~iLii~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~~~~~~~~~~l~~----~~ 96 (145)
+.+|-+|.-|... .+.|+.+-+-+|..+..+.+..++...+..-..+|+||+|.. .+..|. ..+++++. .+
T Consensus 233 ~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~-~~i~el~~~~~~~~ 311 (407)
T COG1419 233 KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDK-EKIEELKELIDVSH 311 (407)
T ss_pred CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCH-HHHHHHHHHHhccc
Confidence 3445444444332 255666666678888888888887776654346899999963 333333 33344443 22
Q ss_pred CcceEEEEeCCCCHHHHHHHH----HhCCceeec
Q 048318 97 IKIKIVGVTSLNSEAEREAFM----QAGLDLCHT 126 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~~----~~g~~~~l~ 126 (145)
+.-..+++++........+.+ ..+.+.++.
T Consensus 312 ~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~ 345 (407)
T COG1419 312 SIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIF 345 (407)
T ss_pred cceEEEEEecCcchHHHHHHHHHhccCCcceeEE
Confidence 223444566666555555444 345666653
No 480
>PRK12829 short chain dehydrogenase; Provisional
Probab=62.32 E-value=51 Score=23.00 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=44.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv 102 (145)
+.++||.+....+...+...|.+.|+.|..+....+..+.+.. .....+.++..++.+.+.. ++++.+.+...++-+|
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 90 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVL 90 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4679999999999999999998889998755433333333222 0112334444444443332 3455554433333334
Q ss_pred E
Q 048318 103 G 103 (145)
Q Consensus 103 ~ 103 (145)
+
T Consensus 91 i 91 (264)
T PRK12829 91 V 91 (264)
T ss_pred E
Confidence 3
No 481
>PRK05717 oxidoreductase; Validated
Probab=62.19 E-value=51 Score=23.01 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=44.3
Q ss_pred CCccccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhc
Q 048318 18 NPSAKNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSM 95 (145)
Q Consensus 18 ~~~~~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~ 95 (145)
++...-.+.+++|......+...+...|...|+.+..+. +.....+.... ....+.++..++.+.+.. .+++.+.+.
T Consensus 3 ~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 3 EPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA-LGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH-cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 334444456799999999999988888888899888653 43333332222 112344444444444333 344555443
No 482
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.18 E-value=43 Score=24.39 Aligned_cols=56 Identities=20% Similarity=0.359 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee------cCCCCHHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH------TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l------~kP~~~~~L~~~i~~~~ 142 (145)
++.++.+++.. ++||+....-.+.+...+++..|||.+. ..|.-+.++..-+.+.+
T Consensus 220 ~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~ 281 (296)
T cd04740 220 LRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYL 281 (296)
T ss_pred HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHH
Confidence 47777877654 6899988888899999999999998763 23544455555554443
No 483
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=62.09 E-value=68 Score=24.38 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=40.9
Q ss_pred ceEEEEeCcHHHH-----HHHHHHHHHcCCeEEEEc---------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHH
Q 048318 26 LFALVVDDDCFIR-----TIHSMALKSLGFKVEVAE---------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATRE 91 (145)
Q Consensus 26 ~~iLii~~~~~~~-----~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~ 91 (145)
.++||+.+..... +.+...|+..|+.+..+. +.+++.+.+++ .++|+|+- +.+++..+..|.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIa---vGGGSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE-FEPDWIIA---LGGGSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEE---eCCccHHHHHHH
Confidence 4678887765433 577788887787766543 24556666666 57898774 345666666665
Q ss_pred H
Q 048318 92 I 92 (145)
Q Consensus 92 l 92 (145)
+
T Consensus 100 i 100 (375)
T cd08179 100 M 100 (375)
T ss_pred H
Confidence 4
No 484
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=62.08 E-value=34 Score=20.95 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=13.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALK 46 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~ 46 (145)
|+|||+.+-.........+.+
T Consensus 1 MkVLviGsGgREHAia~~l~~ 21 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQ 21 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhc
Confidence 578999988666555554444
No 485
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.00 E-value=63 Score=25.96 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=44.2
Q ss_pred CceEEEEeCcHHHHHHHH---HHHH-------------HcCCeEEEEcCHHHHHHHHHcCCCccEEEEec--CCCCC-CH
Q 048318 25 RLFALVVDDDCFIRTIHS---MALK-------------SLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK--EMPVM-NG 85 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~---~~L~-------------~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~--~~~~~-~~ 85 (145)
+.+|||+..|....-.++ -..+ +.||-=..+.-..+|++.... ..||+|++|. .|.+. +-
T Consensus 406 kfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~-~gfDVvLiDTAGR~~~~~~l 484 (587)
T KOG0781|consen 406 KFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARN-QGFDVVLIDTAGRMHNNAPL 484 (587)
T ss_pred CceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHh-cCCCEEEEeccccccCChhH
Confidence 568999988876543322 2222 123443344556778888777 6899999997 33322 22
Q ss_pred HH-HHHHHHhcCCcceEEEEe
Q 048318 86 IE-ATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 86 ~~-~~~~l~~~~~~~~iv~l~ 105 (145)
.. +.+.++...|+ .|++++
T Consensus 485 m~~l~k~~~~~~pd-~i~~vg 504 (587)
T KOG0781|consen 485 MTSLAKLIKVNKPD-LILFVG 504 (587)
T ss_pred HHHHHHHHhcCCCc-eEEEeh
Confidence 22 33344444555 455443
No 486
>PLN02775 Probable dihydrodipicolinate reductase
Probab=61.90 E-value=62 Score=23.89 Aligned_cols=102 Identities=9% Similarity=0.035 Sum_probs=57.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEE----------------------EE--cCHHHHHHHHHcCCCccEEEEecCCC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVE----------------------VA--ENGKEAVDLFRSGAKFDIVFIDKEMP 81 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~----------------------~~--~~~~~al~~~~~~~~~dlvl~d~~~~ 81 (145)
++|++..-....-......+...+++++ .. .+.++++..+.. ..||+|++|...|
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~-~~~~~VvIDFT~P 90 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA-EYPNLIVVDYTLP 90 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc-cCCCEEEEECCCh
Confidence 4566666666665555555444444443 22 555666655544 4699999999987
Q ss_pred CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh-CCceeecCCCCH
Q 048318 82 VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA-GLDLCHTKPLSV 131 (145)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~-g~~~~l~kP~~~ 131 (145)
+. ..+.++...+. .+|+|+=|..-+.+........ +.--++...++.
T Consensus 91 ~a-~~~~~~~~~~~--g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 91 DA-VNDNAELYCKN--GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred HH-HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 52 33444444433 4666665555555555544443 444444445654
No 487
>PRK05993 short chain dehydrogenase; Provisional
Probab=61.80 E-value=54 Score=23.37 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=5.8
Q ss_pred CccEEEEec
Q 048318 70 KFDIVFIDK 78 (145)
Q Consensus 70 ~~dlvl~d~ 78 (145)
.+|+++...
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 467777654
No 488
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.74 E-value=52 Score=22.93 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=10.2
Q ss_pred HHHHHHHcCCCccEEEEecC
Q 048318 60 EAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 60 ~al~~~~~~~~~dlvl~d~~ 79 (145)
..++.+.. ...-+|++|-.
T Consensus 69 ~~~~~~~~-~~ipvV~i~~~ 87 (270)
T cd06296 69 AQRAALRR-TGIPFVVVDPA 87 (270)
T ss_pred HHHHHHhc-CCCCEEEEecc
Confidence 34555544 34567776653
No 489
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=61.68 E-value=38 Score=25.07 Aligned_cols=55 Identities=5% Similarity=0.154 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 84 NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
-|..+++.+.. .+|+|....... ..+....|..+++..|-+.+++...|..++.+
T Consensus 291 ~~~~~lEAma~---G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 291 FGLSLMEALSH---GLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cChHHHHHHhC---CCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 34555555443 567775432211 12345678899999999999999999888753
No 490
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.66 E-value=83 Score=25.23 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=49.2
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecC--------C------CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKE--------M------PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~--------~------~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~ 119 (145)
-+.+.+++...+.. ..|.|.+..+ . |.......+..+.+. ..+|||+=..-.+...+..|+..
T Consensus 296 ~v~t~e~a~~a~~a--GaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIadGGI~~~~di~kAla~ 372 (505)
T PLN02274 296 NVVTMYQAQNLIQA--GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIADGGISNSGHIVKALTL 372 (505)
T ss_pred cCCCHHHHHHHHHc--CcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHc
Confidence 47788888888764 5898877531 1 122234445555443 36899888888899999999999
Q ss_pred CCceeec
Q 048318 120 GLDLCHT 126 (145)
Q Consensus 120 g~~~~l~ 126 (145)
||+.+..
T Consensus 373 GA~~V~v 379 (505)
T PLN02274 373 GASTVMM 379 (505)
T ss_pred CCCEEEE
Confidence 9998864
No 491
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=61.65 E-value=52 Score=22.94 Aligned_cols=81 Identities=26% Similarity=0.302 Sum_probs=49.0
Q ss_pred HHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEec-CCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHHHHHH
Q 048318 45 LKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDK-EMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 45 L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~-~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
|+..|.. ++.+-+..+++.....+..|=-.+++- .-.+.+|.++++.+.+ ....+.| +.++-.+..+...+.
T Consensus 97 L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tki-l~As~r~~~ei~~a~ 175 (211)
T cd00956 97 LSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKI-LAASIRNPQHVIEAA 175 (211)
T ss_pred HHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceE-EecccCCHHHHHHHH
Confidence 4444543 335667777776665532221122221 2235688888877765 2334444 467778899999999
Q ss_pred HhCCceeec
Q 048318 118 QAGLDLCHT 126 (145)
Q Consensus 118 ~~g~~~~l~ 126 (145)
..|++.+=.
T Consensus 176 ~~Gad~vTv 184 (211)
T cd00956 176 LAGADAITL 184 (211)
T ss_pred HcCCCEEEe
Confidence 999988743
No 492
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=61.49 E-value=59 Score=23.49 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCccEEEEe-cC----CCCC--CHHHHHHHHHhcCCcceEEE-EeCCCCH-----HHHHHHHHhCCceee
Q 048318 59 KEAVDLFRSGAKFDIVFID-KE----MPVM--NGIEATREIRSMGIKIKIVG-VTSLNSE-----AEREAFMQAGLDLCH 125 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d-~~----~~~~--~~~~~~~~l~~~~~~~~iv~-l~~~~~~-----~~~~~~~~~g~~~~l 125 (145)
..|.+.+......+++++. .. .+.. -.+..+..+++.. +.||++ .+-.... .....|...||++++
T Consensus 139 ~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~ 217 (250)
T PRK13397 139 LGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIM 217 (250)
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEE
Confidence 4455555543457899997 21 1111 1233445555533 678876 4422232 567788899999765
No 493
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=61.47 E-value=30 Score=23.53 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
...+++.+++..|+.+|++.+...+........-.....+..-|+|..-..++.-+
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~ 92 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLD 92 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHH
Confidence 45677777777788888877766555443322212223344458876655555443
No 494
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=61.41 E-value=74 Score=24.62 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=66.1
Q ss_pred eCcHHHHHHHHHHHHHcCCeEEE----EcCHHHHHHHHHcCCCccEEEEecCC-C--CCCHHHHHHHHHhcCCcceEEEE
Q 048318 32 DDDCFIRTIHSMALKSLGFKVEV----AENGKEAVDLFRSGAKFDIVFIDKEM-P--VMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~~----~~~~~~al~~~~~~~~~dlvl~d~~~-~--~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+..........+..++.|..+.. ..+..+.++.+. ..+|+|++-... + ..++++-++.+++...+.+|. +
T Consensus 259 ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~--~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~-V 335 (391)
T PRK13307 259 LAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLK--VKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVA-V 335 (391)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhh--CCCCEEEEccccCCCcccchHHHHHHHHHhCCCCcEE-E
Confidence 44444455566667777866554 345556666553 357877665311 1 235677777777765565554 5
Q ss_pred eCCCCHHHHHHHHHhCCceee-----cCCCCHHHHHHHHHHHH
Q 048318 105 TSLNSEAEREAFMQAGLDLCH-----TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~L~~~i~~~~ 142 (145)
.+.-+.+....+.+.|++.++ .+.-++.+-.+.+...+
T Consensus 336 dGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 336 AGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred ECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 666667778889999999664 44445666555555443
No 495
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=61.38 E-value=59 Score=23.44 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=6.8
Q ss_pred HHHHHHHHcCCeEE
Q 048318 40 IHSMALKSLGFKVE 53 (145)
Q Consensus 40 ~l~~~L~~~g~~v~ 53 (145)
.+...+++.||.+.
T Consensus 22 gIe~~a~~~Gy~l~ 35 (279)
T PF00532_consen 22 GIEQEAREHGYQLL 35 (279)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCEEE
Confidence 33444445566554
No 496
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=15 Score=25.73 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=46.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.-+|.++...+..++.|+..||. |. .+.|+...+. .. .+||.|++...-+.... .++++++..
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~--~~-aPyD~I~Vtaaa~~vP~-~Ll~QL~~g 162 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP--EE-APYDRIIVTAAAPEVPE-ALLDQLKPG 162 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC--CC-CCcCEEEEeeccCCCCH-HHHHhcccC
Confidence 7888999999999999999999984 44 5556554332 22 58999999987665432 456666653
No 497
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.83 E-value=49 Score=28.66 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=46.5
Q ss_pred CccEEEEe-cCCCCCCHHHHH-HHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFID-KEMPVMNGIEAT-REIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d-~~~~~~~~~~~~-~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+-++|+| .++-..+.++.+ +.|-+-..++.+|+.+. +...+...+...+.-|-.+|++.+++...+..++.
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT--e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT--DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC--CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHH
Confidence 46799998 455444555543 44333233555555433 33334556777788898999999999999887664
No 498
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=60.82 E-value=29 Score=26.09 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=50.4
Q ss_pred CccEEEEec-CCCCCCHHHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDK-EMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|-++|+|- +.-..+.+..+++..+..+ .+.++++++.-+ .+..-+......|..||+..+.+..+++.+..
T Consensus 129 ~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyls--rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLS--RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred cceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChh--hCChHHHhhHHHhcCCCcchHHHHHHHHHHHH
Confidence 357888884 3233466777776666543 667777777543 34555677888999999999999999887654
No 499
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=60.79 E-value=62 Score=23.52 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=57.7
Q ss_pred eEEEEeCcHHHHHHHHHHH---HH-cC--CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC-c
Q 048318 27 FALVVDDDCFIRTIHSMAL---KS-LG--FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-K 98 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L---~~-~g--~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~-~ 98 (145)
.+|+.++|-...-.+...+ ++ .+ ..+ ..+.+.+++.+.... .+|.|.+|-- ..+.+++..+... +
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~--gaDyI~ld~~-----~~e~l~~~~~~~~~~ 226 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA--GADIIMLDNM-----SPEELREAVALLKGR 226 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc--CCCEEEECCc-----CHHHHHHHHHHcCCC
Confidence 5677777755543322222 22 23 223 488899999888754 5899999843 2344555444322 5
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+|+++ ++.-+.+.+.+....|+|.+-
T Consensus 227 ipi~A-iGGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 227 VLLEA-SGGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 67664 555677788889999998874
No 500
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.79 E-value=66 Score=23.78 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCH
Q 048318 40 IHSMALKSLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSE 110 (145)
Q Consensus 40 ~l~~~L~~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~ 110 (145)
.++..+++.|.++.. ..+....+..+.. ..+|+|++-.. .. +...+++.+++.....+++.++.....
T Consensus 157 ~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~-~~~d~v~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 232 (347)
T cd06336 157 AYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLA-EKPDVIFLGGP--SPAPAALVIKQARELGFKGGFLSCTGDKYD 232 (347)
T ss_pred HHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHh-cCCCEEEEcCC--CchHHHHHHHHHHHcCCCccEEeccCCCch
Confidence 345556667877642 2466677777766 57999988654 33 577888898887666667665544433
Done!