Query 048318
Match_columns 145
No_of_seqs 115 out of 1147
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 14:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 3.4E-30 1.2E-34 166.1 15.8 121 23-144 10-133 (134)
2 3gl9_A Response regulator; bet 99.9 9.1E-26 3.1E-30 142.6 16.8 118 25-143 2-121 (122)
3 3f6p_A Transcriptional regulat 99.9 1.6E-25 5.6E-30 140.9 16.2 119 25-145 2-120 (120)
4 3t6k_A Response regulator rece 99.9 4.3E-25 1.5E-29 141.9 17.3 119 25-144 4-124 (136)
5 3h1g_A Chemotaxis protein CHEY 99.9 1.5E-24 5E-29 138.1 16.8 121 25-145 5-128 (129)
6 2lpm_A Two-component response 99.9 2.3E-27 8E-32 150.5 3.3 115 24-144 7-122 (123)
7 1dbw_A Transcriptional regulat 99.9 4.8E-24 1.6E-28 135.0 17.8 119 25-144 3-121 (126)
8 1srr_A SPO0F, sporulation resp 99.9 2E-24 7E-29 136.2 15.9 119 25-144 3-121 (124)
9 3eod_A Protein HNR; response r 99.9 1.8E-24 6.3E-29 137.5 15.6 121 24-145 6-127 (130)
10 3rqi_A Response regulator prot 99.9 4.3E-25 1.5E-29 148.8 13.2 118 25-143 7-124 (184)
11 3crn_A Response regulator rece 99.9 4.5E-24 1.5E-28 136.3 17.1 119 25-144 3-121 (132)
12 3hdg_A Uncharacterized protein 99.9 1.6E-24 5.5E-29 138.9 14.9 121 23-144 5-125 (137)
13 3gt7_A Sensor protein; structu 99.9 5.7E-24 2E-28 139.3 17.3 120 24-144 6-127 (154)
14 4e7p_A Response regulator; DNA 99.9 5.3E-24 1.8E-28 138.7 16.9 123 22-145 17-141 (150)
15 3hv2_A Response regulator/HD d 99.9 7.7E-24 2.6E-28 138.4 17.7 120 24-144 13-133 (153)
16 2pl1_A Transcriptional regulat 99.9 8.6E-24 2.9E-28 132.6 17.2 118 26-144 1-118 (121)
17 3hdv_A Response regulator; PSI 99.9 6.7E-24 2.3E-28 135.8 16.7 121 24-144 6-127 (136)
18 1zgz_A Torcad operon transcrip 99.9 1.4E-23 4.7E-28 131.9 17.5 118 25-144 2-119 (122)
19 1tmy_A CHEY protein, TMY; chem 99.9 4.9E-24 1.7E-28 133.6 15.4 117 25-142 2-119 (120)
20 3jte_A Response regulator rece 99.9 1E-23 3.5E-28 136.0 17.1 120 25-144 3-123 (143)
21 3hzh_A Chemotaxis response reg 99.9 3.4E-24 1.2E-28 140.8 14.8 120 24-144 35-157 (157)
22 3m6m_D Sensory/regulatory prot 99.9 9.1E-24 3.1E-28 136.8 16.3 119 24-143 13-135 (143)
23 3kto_A Response regulator rece 99.9 1.4E-24 4.9E-29 139.3 12.2 119 25-144 6-126 (136)
24 2r25_B Osmosensing histidine p 99.9 1.5E-23 5E-28 134.2 16.8 119 25-143 2-126 (133)
25 3r0j_A Possible two component 99.9 7.9E-24 2.7E-28 148.8 16.6 120 24-144 22-141 (250)
26 3f6c_A Positive transcription 99.9 2.3E-24 7.9E-29 137.6 12.3 119 26-145 2-121 (134)
27 3snk_A Response regulator CHEY 99.9 4.4E-25 1.5E-29 141.4 8.8 120 24-144 13-133 (135)
28 3b2n_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 134.0 16.0 119 25-144 3-123 (133)
29 3cfy_A Putative LUXO repressor 99.9 9.4E-24 3.2E-28 135.8 15.0 118 26-144 5-122 (137)
30 4dad_A Putative pilus assembly 99.9 4.1E-24 1.4E-28 138.5 13.2 123 22-144 17-141 (146)
31 3i42_A Response regulator rece 99.9 5.7E-24 2E-28 134.7 13.3 118 25-144 3-122 (127)
32 1xhf_A DYE resistance, aerobic 99.9 4.3E-23 1.5E-27 129.9 17.2 117 26-144 4-120 (123)
33 1jbe_A Chemotaxis protein CHEY 99.9 3.6E-23 1.2E-27 131.0 16.9 119 25-144 4-125 (128)
34 3lua_A Response regulator rece 99.9 5.6E-24 1.9E-28 136.9 13.1 120 25-144 4-127 (140)
35 3grc_A Sensor protein, kinase; 99.9 7.1E-24 2.4E-28 136.3 13.5 119 25-144 6-127 (140)
36 3eul_A Possible nitrate/nitrit 99.9 3.9E-23 1.3E-27 134.8 17.0 123 22-145 12-136 (152)
37 1mvo_A PHOP response regulator 99.9 1.8E-23 6.2E-28 133.7 15.1 120 24-144 2-121 (136)
38 2a9o_A Response regulator; ess 99.9 4.3E-23 1.5E-27 129.1 16.0 117 26-144 2-118 (120)
39 3kht_A Response regulator; PSI 99.9 3.2E-23 1.1E-27 134.0 15.8 119 25-144 5-128 (144)
40 1dz3_A Stage 0 sporulation pro 99.9 2.3E-23 7.7E-28 132.5 14.7 119 25-144 2-123 (130)
41 1mb3_A Cell division response 99.9 2.8E-23 9.6E-28 130.8 14.8 118 26-144 2-121 (124)
42 2qzj_A Two-component response 99.9 3.4E-23 1.2E-27 133.0 15.4 118 25-144 4-121 (136)
43 3heb_A Response regulator rece 99.9 6E-23 2E-27 133.9 16.8 120 24-143 3-134 (152)
44 3cnb_A DNA-binding response re 99.9 9.3E-23 3.2E-27 131.2 17.5 120 24-144 7-130 (143)
45 2qxy_A Response regulator; reg 99.9 4.8E-23 1.6E-27 132.7 16.1 119 24-144 3-121 (142)
46 1p6q_A CHEY2; chemotaxis, sign 99.9 3.6E-23 1.2E-27 131.2 15.2 119 25-144 6-127 (129)
47 3kcn_A Adenylate cyclase homol 99.9 7.9E-23 2.7E-27 133.3 16.4 120 24-144 3-123 (151)
48 2jba_A Phosphate regulon trans 99.9 5.7E-24 1.9E-28 134.5 10.5 119 25-144 2-122 (127)
49 3ilh_A Two component response 99.9 1.3E-22 4.3E-27 131.0 17.1 121 24-144 8-139 (146)
50 3lte_A Response regulator; str 99.9 1.2E-22 4E-27 129.3 16.7 118 25-144 6-125 (132)
51 3mm4_A Histidine kinase homolo 99.9 5.6E-23 1.9E-27 140.9 16.0 119 24-144 60-196 (206)
52 3nhm_A Response regulator; pro 99.9 3.1E-23 1E-27 132.2 13.7 117 25-144 4-122 (133)
53 2qr3_A Two-component system re 99.9 6.5E-23 2.2E-27 131.6 15.2 119 25-144 3-126 (140)
54 2zay_A Response regulator rece 99.9 5.3E-23 1.8E-27 133.3 14.8 120 24-144 7-128 (147)
55 2rjn_A Response regulator rece 99.9 1.3E-22 4.6E-27 132.5 16.7 120 24-144 6-126 (154)
56 3q9s_A DNA-binding response re 99.9 3.8E-23 1.3E-27 145.5 15.1 118 25-144 37-154 (249)
57 3cg0_A Response regulator rece 99.9 1E-22 3.5E-27 130.6 15.7 119 24-144 8-128 (140)
58 1kgs_A DRRD, DNA binding respo 99.9 4.8E-23 1.7E-27 142.2 14.9 119 25-144 2-120 (225)
59 1i3c_A Response regulator RCP1 99.9 2E-22 6.8E-27 131.2 17.0 119 25-143 8-136 (149)
60 3luf_A Two-component system re 99.9 6.8E-23 2.3E-27 145.1 15.7 121 24-144 123-245 (259)
61 3h5i_A Response regulator/sens 99.9 2.1E-23 7.3E-28 134.4 12.0 119 25-144 5-124 (140)
62 1zh2_A KDP operon transcriptio 99.9 9.9E-23 3.4E-27 127.6 14.7 117 26-144 2-118 (121)
63 1k68_A Phytochrome response re 99.9 2.6E-22 8.8E-27 128.4 16.9 120 25-144 2-131 (140)
64 1a04_A Nitrate/nitrite respons 99.9 1.3E-22 4.6E-27 139.3 16.4 119 25-144 5-125 (215)
65 3cg4_A Response regulator rece 99.9 2.9E-23 9.8E-28 133.7 12.1 120 24-144 6-127 (142)
66 2ayx_A Sensor kinase protein R 99.9 1.3E-22 4.3E-27 143.3 16.3 121 23-144 127-247 (254)
67 1k66_A Phytochrome response re 99.9 3.2E-22 1.1E-26 129.3 16.7 121 24-144 5-138 (149)
68 3a10_A Response regulator; pho 99.9 6.3E-23 2.1E-27 127.8 12.7 114 26-142 2-115 (116)
69 3cz5_A Two-component response 99.9 2.2E-22 7.5E-27 131.3 15.8 119 25-144 5-125 (153)
70 1yio_A Response regulatory pro 99.9 4.4E-23 1.5E-27 141.0 13.1 119 25-144 4-122 (208)
71 3dzd_A Transcriptional regulat 99.9 4.4E-23 1.5E-27 152.7 13.6 116 27-143 2-117 (368)
72 3cu5_A Two component transcrip 99.9 5.5E-23 1.9E-27 132.7 12.2 118 25-143 2-122 (141)
73 1qkk_A DCTD, C4-dicarboxylate 99.9 2.1E-22 7.2E-27 131.7 15.1 119 25-144 3-121 (155)
74 3c3m_A Response regulator rece 99.9 3.1E-22 1E-26 128.6 15.4 118 26-144 4-123 (138)
75 3n0r_A Response regulator; sig 99.9 1.5E-23 5.1E-28 150.6 10.1 116 25-144 160-277 (286)
76 2gkg_A Response regulator homo 99.9 1.8E-22 6E-27 127.2 13.5 118 25-144 5-125 (127)
77 1s8n_A Putative antiterminator 99.9 1.3E-22 4.4E-27 138.6 13.7 120 23-144 11-131 (205)
78 1dcf_A ETR1 protein; beta-alph 99.9 5.7E-22 1.9E-26 126.9 15.3 118 25-144 7-129 (136)
79 3n53_A Response regulator rece 99.9 3.4E-23 1.2E-27 133.2 9.6 118 25-144 3-122 (140)
80 2oqr_A Sensory transduction pr 99.9 3.6E-22 1.2E-26 138.4 14.9 119 24-144 3-121 (230)
81 2qsj_A DNA-binding response re 99.9 5.1E-22 1.7E-26 129.6 14.5 120 25-144 3-124 (154)
82 2jk1_A HUPR, hydrogenase trans 99.9 1.1E-21 3.8E-26 126.0 15.8 115 27-143 3-118 (139)
83 1ys7_A Transcriptional regulat 99.9 1.6E-22 5.6E-27 140.2 12.4 119 25-144 7-125 (233)
84 3eqz_A Response regulator; str 99.9 1.3E-22 4.3E-27 129.4 10.8 118 25-144 3-125 (135)
85 3eq2_A Probable two-component 99.9 2.7E-22 9.2E-27 149.4 14.2 119 24-143 4-123 (394)
86 1ny5_A Transcriptional regulat 99.9 9E-22 3.1E-26 146.6 15.8 117 26-143 1-117 (387)
87 2pln_A HP1043, response regula 99.9 2.8E-21 9.6E-26 123.8 16.1 117 22-144 15-133 (137)
88 2qvg_A Two component response 99.9 2.6E-21 9E-26 124.6 15.9 119 25-143 7-134 (143)
89 2rdm_A Response regulator rece 99.9 2.5E-21 8.6E-26 123.0 15.1 117 25-144 5-123 (132)
90 2gwr_A DNA-binding response re 99.9 5.1E-22 1.7E-26 138.6 12.7 119 24-144 4-122 (238)
91 1p2f_A Response regulator; DRR 99.9 1.6E-21 5.6E-26 134.3 15.0 116 25-144 2-117 (220)
92 3t8y_A CHEB, chemotaxis respon 99.9 2.2E-21 7.5E-26 128.3 15.0 120 23-144 23-155 (164)
93 3c3w_A Two component transcrip 99.9 2E-22 6.8E-27 139.7 9.4 118 26-144 2-121 (225)
94 2j48_A Two-component sensor ki 99.9 1.3E-21 4.4E-26 121.5 12.3 115 26-144 2-118 (119)
95 2qv0_A Protein MRKE; structura 99.9 7.1E-21 2.4E-25 122.6 16.1 118 24-144 8-127 (143)
96 3c97_A Signal transduction his 99.9 1.1E-21 3.7E-26 126.3 11.4 117 24-144 9-130 (140)
97 1w25_A Stalked-cell differenti 99.9 3.9E-21 1.3E-25 145.5 16.0 117 26-143 2-120 (459)
98 3kyj_B CHEY6 protein, putative 99.9 2.2E-21 7.6E-26 125.5 12.5 119 22-142 10-143 (145)
99 3klo_A Transcriptional regulat 99.9 3.1E-22 1.1E-26 138.6 8.1 120 24-144 6-129 (225)
100 1dc7_A NTRC, nitrogen regulati 99.9 3.7E-23 1.3E-27 130.0 0.5 118 26-144 4-121 (124)
101 2hqr_A Putative transcriptiona 99.9 2.9E-20 1E-24 128.2 15.0 113 26-144 1-115 (223)
102 3sy8_A ROCR; TIM barrel phosph 99.8 1.1E-20 3.8E-25 141.2 12.7 120 25-144 3-128 (400)
103 2b4a_A BH3024; flavodoxin-like 99.8 6.2E-21 2.1E-25 122.3 9.7 119 22-144 12-131 (138)
104 3bre_A Probable two-component 99.8 1.4E-20 4.9E-25 138.1 12.5 117 25-142 18-137 (358)
105 1qo0_D AMIR; binding protein, 99.8 1.8E-20 6.3E-25 127.0 11.1 113 25-143 12-124 (196)
106 1a2o_A CHEB methylesterase; ba 99.8 5.3E-19 1.8E-23 130.1 15.2 118 25-144 3-133 (349)
107 2vyc_A Biodegradative arginine 99.8 8.1E-20 2.8E-24 145.8 9.6 119 26-144 1-133 (755)
108 3luf_A Two-component system re 99.8 2.7E-18 9.3E-23 121.5 10.1 103 25-131 4-107 (259)
109 3cwo_X Beta/alpha-barrel prote 99.4 4.1E-13 1.4E-17 92.8 5.4 93 50-143 6-100 (237)
110 1w25_A Stalked-cell differenti 99.2 8.4E-10 2.9E-14 83.3 16.1 116 25-143 152-269 (459)
111 3q7r_A Transcriptional regulat 98.4 3.4E-06 1.2E-10 50.2 9.1 105 25-144 12-118 (121)
112 3n75_A LDC, lysine decarboxyla 98.4 3.9E-07 1.3E-11 72.5 5.9 104 37-143 18-122 (715)
113 2yxb_A Coenzyme B12-dependent 98.0 0.00028 9.4E-09 46.1 12.9 117 25-143 18-144 (161)
114 2ayx_A Sensor kinase protein R 97.9 3.6E-05 1.2E-09 53.7 6.6 95 24-142 10-104 (254)
115 1ccw_A Protein (glutamate muta 97.5 0.0048 1.6E-07 39.0 12.2 110 32-142 14-134 (137)
116 3cwo_X Beta/alpha-barrel prote 97.0 0.014 4.7E-07 39.5 10.4 82 57-139 131-221 (237)
117 3ezx_A MMCP 1, monomethylamine 96.8 0.033 1.1E-06 37.9 10.9 97 25-125 92-201 (215)
118 2i2x_B MTAC, methyltransferase 96.7 0.062 2.1E-06 37.6 12.4 111 25-142 123-242 (258)
119 1req_A Methylmalonyl-COA mutas 96.7 0.027 9.2E-07 45.0 11.1 117 25-143 596-722 (727)
120 2xij_A Methylmalonyl-COA mutas 96.7 0.036 1.2E-06 44.5 11.9 116 25-142 604-729 (762)
121 3q58_A N-acetylmannosamine-6-p 96.6 0.051 1.7E-06 37.4 11.2 90 34-127 114-210 (229)
122 1y80_A Predicted cobalamin bin 96.5 0.1 3.5E-06 35.1 13.3 110 25-141 88-208 (210)
123 3igs_A N-acetylmannosamine-6-p 96.4 0.095 3.3E-06 36.0 11.2 89 35-127 115-210 (232)
124 1xrs_B D-lysine 5,6-aminomutas 96.3 0.094 3.2E-06 36.8 11.0 114 25-142 120-256 (262)
125 3fkq_A NTRC-like two-domain pr 96.2 0.095 3.3E-06 38.4 11.3 106 22-142 18-126 (373)
126 1wv2_A Thiazole moeity, thiazo 95.8 0.31 1E-05 34.1 13.3 99 40-142 126-236 (265)
127 2htm_A Thiazole biosynthesis p 95.6 0.18 6.2E-06 35.4 9.6 96 44-142 119-227 (268)
128 3o63_A Probable thiamine-phosp 95.3 0.33 1.1E-05 33.6 10.4 87 54-143 141-240 (243)
129 3kp1_A D-ornithine aminomutase 95.2 0.19 6.4E-06 39.7 9.7 114 24-142 601-733 (763)
130 3qja_A IGPS, indole-3-glycerol 94.7 0.73 2.5E-05 32.4 12.7 103 35-139 148-259 (272)
131 3qz6_A HPCH/HPAI aldolase; str 94.5 0.75 2.6E-05 32.1 10.6 99 41-141 6-110 (261)
132 3bul_A Methionine synthase; tr 94.5 0.84 2.9E-05 35.7 11.7 114 25-142 98-223 (579)
133 2ekc_A AQ_1548, tryptophan syn 94.4 0.31 1.1E-05 34.0 8.4 57 85-141 81-143 (262)
134 3f4w_A Putative hexulose 6 pho 94.3 0.65 2.2E-05 30.9 9.7 115 27-143 79-208 (211)
135 3l9w_A Glutathione-regulated p 93.8 1.3 4.3E-05 33.1 11.2 94 25-126 27-121 (413)
136 2q5c_A NTRC family transcripti 93.7 0.99 3.4E-05 30.1 13.8 118 24-143 3-140 (196)
137 1r8j_A KAIA; circadian clock p 93.5 1.3 4.5E-05 31.0 10.2 81 25-107 9-90 (289)
138 1qop_A Tryptophan synthase alp 93.1 0.7 2.4E-05 32.3 8.4 56 85-140 81-142 (268)
139 3rht_A (gatase1)-like protein; 93.0 0.092 3.1E-06 36.8 3.7 79 25-108 4-89 (259)
140 3fwz_A Inner membrane protein 93.0 0.97 3.3E-05 28.0 11.1 106 25-141 30-136 (140)
141 3tsm_A IGPS, indole-3-glycerol 92.8 1.8 6E-05 30.5 12.5 100 37-138 157-265 (272)
142 1yad_A Regulatory protein TENI 91.8 2 6.7E-05 28.8 11.7 73 49-125 110-190 (221)
143 2v5j_A 2,4-dihydroxyhept-2-ENE 90.5 3.4 0.00012 29.2 13.0 99 41-140 30-132 (287)
144 3tqv_A Nicotinate-nucleotide p 90.5 1.5 5E-05 31.2 7.6 69 71-141 169-239 (287)
145 2v82_A 2-dehydro-3-deoxy-6-pho 90.5 1.8 6.2E-05 28.8 7.8 80 43-127 95-176 (212)
146 3inp_A D-ribulose-phosphate 3- 90.2 2.2 7.5E-05 29.5 8.2 84 57-141 41-130 (246)
147 1ujp_A Tryptophan synthase alp 90.0 1.3 4.6E-05 31.0 7.0 75 62-139 36-138 (271)
148 1req_B Methylmalonyl-COA mutas 90.0 0.76 2.6E-05 36.3 6.2 101 36-141 525-632 (637)
149 4e38_A Keto-hydroxyglutarate-a 89.8 3.5 0.00012 28.3 8.9 94 41-138 27-123 (232)
150 2gek_A Phosphatidylinositol ma 89.8 4.2 0.00014 29.2 11.0 107 25-143 240-348 (406)
151 3s83_A Ggdef family protein; s 89.7 2.8 9.5E-05 28.7 8.5 101 39-141 142-255 (259)
152 2lci_A Protein OR36; structura 89.7 1.9 6.6E-05 25.2 6.4 49 27-76 53-107 (134)
153 3vnd_A TSA, tryptophan synthas 89.7 0.62 2.1E-05 32.7 5.1 54 86-139 83-142 (267)
154 2vws_A YFAU, 2-keto-3-deoxy su 89.4 4.1 0.00014 28.4 13.1 99 41-140 9-111 (267)
155 4fxs_A Inosine-5'-monophosphat 89.3 1.6 5.4E-05 33.4 7.4 66 59-126 233-299 (496)
156 3nav_A Tryptophan synthase alp 89.0 0.94 3.2E-05 31.9 5.6 54 85-138 84-143 (271)
157 2xci_A KDO-transferase, 3-deox 88.9 2.9 0.0001 30.3 8.5 110 25-143 225-345 (374)
158 2l69_A Rossmann 2X3 fold prote 88.7 2.4 8E-05 24.8 11.9 82 25-106 2-85 (134)
159 4e5v_A Putative THUA-like prot 88.6 0.78 2.7E-05 32.4 5.0 58 24-83 3-71 (281)
160 4avf_A Inosine-5'-monophosphat 88.5 2.5 8.6E-05 32.2 8.1 68 57-126 229-297 (490)
161 1geq_A Tryptophan synthase alp 88.4 2.9 0.0001 28.4 7.8 49 85-134 68-122 (248)
162 3dr5_A Putative O-methyltransf 88.3 3.5 0.00012 27.7 8.0 67 25-94 81-151 (221)
163 1xi3_A Thiamine phosphate pyro 88.3 4 0.00014 26.9 11.4 84 54-141 114-209 (215)
164 4fo4_A Inosine 5'-monophosphat 87.9 2.6 8.9E-05 30.9 7.6 67 58-126 109-176 (366)
165 1qpo_A Quinolinate acid phosph 87.7 5.4 0.00019 28.2 8.8 70 52-125 198-267 (284)
166 3lab_A Putative KDPG (2-keto-3 87.5 5 0.00017 27.2 8.8 51 83-135 49-99 (217)
167 3l0g_A Nicotinate-nucleotide p 87.5 2.7 9.1E-05 30.1 7.1 69 71-141 178-248 (300)
168 1dxe_A 2-dehydro-3-deoxy-galac 87.4 5.5 0.00019 27.5 12.4 99 41-140 10-112 (256)
169 3gnn_A Nicotinate-nucleotide p 87.4 4.5 0.00016 28.8 8.3 65 53-124 214-278 (298)
170 3gnn_A Nicotinate-nucleotide p 87.1 2.3 8E-05 30.3 6.7 69 71-141 180-250 (298)
171 3usb_A Inosine-5'-monophosphat 87.0 3.5 0.00012 31.6 8.1 66 59-126 258-324 (511)
172 1wa3_A 2-keto-3-deoxy-6-phosph 86.6 3.1 0.00011 27.4 6.9 80 54-138 17-100 (205)
173 4af0_A Inosine-5'-monophosphat 86.5 2.9 0.0001 32.4 7.3 62 62-125 286-348 (556)
174 1g5t_A COB(I)alamin adenosyltr 86.4 3.4 0.00012 27.6 6.9 44 69-113 119-167 (196)
175 3ceu_A Thiamine phosphate pyro 86.3 2.1 7.1E-05 28.6 5.9 67 54-124 94-169 (210)
176 3r2g_A Inosine 5'-monophosphat 86.3 3.2 0.00011 30.4 7.2 67 58-126 101-168 (361)
177 3llv_A Exopolyphosphatase-rela 86.2 4.1 0.00014 24.9 8.9 53 70-126 70-122 (141)
178 3paj_A Nicotinate-nucleotide p 85.8 3.2 0.00011 29.9 6.9 55 85-141 218-272 (320)
179 1lnq_A MTHK channels, potassiu 85.5 6.3 0.00022 28.1 8.5 89 28-125 140-229 (336)
180 3ajx_A 3-hexulose-6-phosphate 85.5 0.88 3E-05 30.2 3.7 46 85-130 40-87 (207)
181 1vc4_A Indole-3-glycerol phosp 85.5 3 0.0001 28.9 6.5 85 39-126 141-235 (254)
182 3tfw_A Putative O-methyltransf 85.4 6.7 0.00023 26.6 9.5 78 25-105 88-169 (248)
183 2ift_A Putative methylase HI07 85.3 3.7 0.00013 26.9 6.7 68 26-94 77-149 (201)
184 1y0e_A Putative N-acetylmannos 85.0 6.5 0.00022 26.1 10.0 76 49-127 119-204 (223)
185 3l4e_A Uncharacterized peptida 85.0 6.6 0.00023 26.2 9.4 63 25-94 27-99 (206)
186 2tps_A Protein (thiamin phosph 84.7 6.8 0.00023 26.1 10.7 69 54-125 122-198 (227)
187 3l0g_A Nicotinate-nucleotide p 84.3 8.1 0.00028 27.6 8.3 91 28-125 181-277 (300)
188 1qdl_B Protein (anthranilate s 84.3 0.81 2.8E-05 30.2 3.0 48 28-76 4-51 (195)
189 1izc_A Macrophomate synthase i 84.2 9.9 0.00034 27.6 11.4 89 52-141 46-139 (339)
190 1zh8_A Oxidoreductase; TM0312, 84.1 9.3 0.00032 27.3 8.8 106 24-141 17-129 (340)
191 3ged_A Short-chain dehydrogena 84.0 8.3 0.00028 26.5 8.5 79 24-103 1-80 (247)
192 3ezy_A Dehydrogenase; structur 83.7 6.6 0.00023 28.0 8.0 16 113-128 81-96 (344)
193 2gjl_A Hypothetical protein PA 83.7 9.8 0.00034 27.1 12.0 80 43-125 112-199 (328)
194 1i1q_B Anthranilate synthase c 83.6 4.4 0.00015 26.5 6.4 51 27-77 2-55 (192)
195 3paj_A Nicotinate-nucleotide p 83.5 10 0.00036 27.3 9.9 92 27-125 204-301 (320)
196 3ec7_A Putative dehydrogenase; 83.5 8 0.00027 27.9 8.3 108 24-140 22-133 (357)
197 3o07_A Pyridoxine biosynthesis 83.4 4.2 0.00014 28.8 6.4 60 84-144 185-251 (291)
198 2z6i_A Trans-2-enoyl-ACP reduc 83.3 10 0.00036 27.1 10.0 78 45-125 106-189 (332)
199 3vk5_A MOEO5; TIM barrel, tran 83.1 7.1 0.00024 27.7 7.5 57 70-127 199-256 (286)
200 4gx0_A TRKA domain protein; me 83.0 5.2 0.00018 30.8 7.5 90 27-126 152-243 (565)
201 3snr_A Extracellular ligand-bi 83.0 8.8 0.0003 26.9 8.3 85 27-114 137-232 (362)
202 1xm3_A Thiazole biosynthesis p 82.7 9.8 0.00033 26.4 10.0 75 49-126 126-206 (264)
203 3sc6_A DTDP-4-dehydrorhamnose 82.3 7.3 0.00025 26.7 7.5 56 24-80 4-66 (287)
204 1qpo_A Quinolinate acid phosph 82.2 5.3 0.00018 28.3 6.7 55 86-142 182-236 (284)
205 3tqv_A Nicotinate-nucleotide p 82.0 11 0.00039 26.7 8.9 91 28-125 172-268 (287)
206 3sz8_A 2-dehydro-3-deoxyphosph 82.0 11 0.00037 26.7 8.1 69 57-125 149-239 (285)
207 2fli_A Ribulose-phosphate 3-ep 81.7 7.1 0.00024 25.9 7.1 72 70-142 131-218 (220)
208 1o4u_A Type II quinolic acid p 81.6 9.4 0.00032 27.0 7.8 69 71-141 163-234 (285)
209 1yxy_A Putative N-acetylmannos 81.4 9.8 0.00034 25.5 9.1 89 49-141 133-231 (234)
210 1h1y_A D-ribulose-5-phosphate 81.4 9.9 0.00034 25.6 10.7 97 44-142 108-221 (228)
211 3gjy_A Spermidine synthase; AP 81.3 7.2 0.00024 28.0 7.2 70 25-95 113-189 (317)
212 4hkt_A Inositol 2-dehydrogenas 81.0 12 0.00042 26.4 9.3 31 108-138 75-107 (331)
213 3bo9_A Putative nitroalkan dio 81.0 13 0.00044 26.6 11.5 80 43-125 118-203 (326)
214 3rc1_A Sugar 3-ketoreductase; 80.8 13 0.00043 26.7 8.5 105 24-140 26-135 (350)
215 2w6r_A Imidazole glycerol phos 80.7 11 0.00038 25.7 9.1 78 58-137 158-245 (266)
216 2fpo_A Methylase YHHF; structu 80.3 9.8 0.00033 24.8 8.2 66 27-94 79-146 (202)
217 3kts_A Glycerol uptake operon 80.1 3.7 0.00013 27.4 5.0 61 60-126 118-178 (192)
218 3ipc_A ABC transporter, substr 80.0 13 0.00044 26.1 8.3 84 27-113 140-234 (356)
219 3w01_A Heptaprenylglyceryl pho 79.9 1.7 5.8E-05 29.9 3.4 58 61-127 28-87 (235)
220 3f4w_A Putative hexulose 6 pho 79.8 2.9 9.8E-05 27.7 4.5 14 113-126 70-83 (211)
221 3u3x_A Oxidoreductase; structu 79.7 8.7 0.0003 27.8 7.4 105 25-141 26-135 (361)
222 1qv9_A F420-dependent methylen 79.6 3.4 0.00012 28.6 4.7 59 69-129 63-121 (283)
223 3axs_A Probable N(2),N(2)-dime 79.6 16 0.00056 27.0 9.9 78 26-108 78-160 (392)
224 2oo3_A Protein involved in cat 79.5 6.4 0.00022 27.8 6.3 69 26-94 114-184 (283)
225 3ffs_A Inosine-5-monophosphate 79.5 6.6 0.00023 29.2 6.7 65 59-126 146-211 (400)
226 1thf_D HISF protein; thermophI 79.5 12 0.00041 25.3 11.3 80 58-139 153-242 (253)
227 3okp_A GDP-mannose-dependent a 79.4 12 0.0004 26.6 8.0 74 59-143 264-343 (394)
228 1wa3_A 2-keto-3-deoxy-6-phosph 79.3 10 0.00035 24.8 7.1 65 57-126 113-177 (205)
229 4a29_A Engineered retro-aldol 79.3 14 0.00046 25.8 12.2 98 28-127 130-233 (258)
230 3ovp_A Ribulose-phosphate 3-ep 79.0 13 0.00043 25.3 8.6 71 71-142 135-217 (228)
231 3lkb_A Probable branched-chain 78.7 15 0.00053 26.2 9.7 86 26-114 144-240 (392)
232 1jcn_A Inosine monophosphate d 78.6 15 0.00051 28.0 8.7 66 59-126 257-323 (514)
233 3ek2_A Enoyl-(acyl-carrier-pro 78.6 12 0.00042 25.3 7.6 82 23-105 12-99 (271)
234 2f6u_A GGGPS, (S)-3-O-geranylg 78.5 2.5 8.4E-05 29.1 3.9 60 59-127 23-84 (234)
235 2lnd_A De novo designed protei 78.4 7.1 0.00024 22.1 6.8 45 99-143 52-100 (112)
236 4gud_A Imidazole glycerol phos 77.9 3.3 0.00011 27.4 4.4 45 25-76 2-46 (211)
237 1vrd_A Inosine-5'-monophosphat 77.7 12 0.0004 28.4 7.8 66 59-126 239-305 (494)
238 2bfw_A GLGA glycogen synthase; 77.5 11 0.00039 23.9 12.9 106 25-143 70-179 (200)
239 1h5y_A HISF; histidine biosynt 77.1 14 0.00047 24.7 10.1 81 57-139 155-245 (253)
240 1sui_A Caffeoyl-COA O-methyltr 77.0 15 0.0005 25.0 10.1 74 25-101 104-186 (247)
241 2iw1_A Lipopolysaccharide core 77.0 17 0.00057 25.6 10.7 106 25-143 228-336 (374)
242 1rd5_A Tryptophan synthase alp 76.8 8.9 0.0003 26.4 6.4 53 85-139 82-137 (262)
243 3hut_A Putative branched-chain 76.8 17 0.00057 25.6 8.2 85 27-114 141-236 (358)
244 2r6o_A Putative diguanylate cy 76.8 4.3 0.00015 28.6 4.9 101 38-140 165-278 (294)
245 2iuy_A Avigt4, glycosyltransfe 76.8 14 0.00049 25.8 7.7 106 25-142 188-306 (342)
246 1fy2_A Aspartyl dipeptidase; s 76.7 12 0.0004 25.4 6.9 63 25-94 31-99 (229)
247 3ffs_A Inosine-5-monophosphate 76.6 21 0.00071 26.5 12.6 99 25-125 156-273 (400)
248 3c3y_A Pfomt, O-methyltransfer 76.5 15 0.0005 24.7 9.5 68 25-94 95-169 (237)
249 2i7c_A Spermidine synthase; tr 76.4 17 0.00057 25.3 8.7 69 25-95 102-181 (283)
250 3p9n_A Possible methyltransfer 76.4 12 0.00042 23.8 9.8 78 26-104 68-152 (189)
251 1x1o_A Nicotinate-nucleotide p 76.3 8.5 0.00029 27.2 6.2 54 86-141 183-237 (286)
252 3bw2_A 2-nitropropane dioxygen 76.3 20 0.00067 26.1 12.1 77 46-125 142-235 (369)
253 2vpt_A Lipolytic enzyme; ester 76.3 6.8 0.00023 25.7 5.6 82 25-107 5-129 (215)
254 3c48_A Predicted glycosyltrans 76.2 20 0.00067 26.0 10.6 108 25-143 276-390 (438)
255 3u81_A Catechol O-methyltransf 76.1 10 0.00035 25.0 6.5 56 25-80 83-144 (221)
256 2qfm_A Spermine synthase; sper 76.1 21 0.0007 26.2 9.5 67 26-92 212-296 (364)
257 1tqj_A Ribulose-phosphate 3-ep 76.0 10 0.00034 25.7 6.4 82 57-141 18-108 (230)
258 3cea_A MYO-inositol 2-dehydrog 76.0 18 0.00063 25.6 9.6 28 109-136 84-113 (346)
259 3td9_A Branched chain amino ac 75.9 18 0.00062 25.5 10.4 85 26-113 150-245 (366)
260 3ovp_A Ribulose-phosphate 3-ep 75.9 8.6 0.00029 26.1 6.0 83 57-141 18-108 (228)
261 3cvo_A Methyltransferase-like 75.8 4.9 0.00017 26.9 4.7 111 25-140 51-198 (202)
262 1o4u_A Type II quinolic acid p 75.8 5.9 0.0002 28.1 5.3 68 54-125 199-266 (285)
263 3h2s_A Putative NADH-flavin re 75.8 9.3 0.00032 25.0 6.2 30 27-56 2-31 (224)
264 3grp_A 3-oxoacyl-(acyl carrier 75.7 13 0.00044 25.5 7.0 79 25-104 27-107 (266)
265 4ef8_A Dihydroorotate dehydrog 75.5 7.3 0.00025 28.4 5.9 57 86-142 265-328 (354)
266 2r60_A Glycosyl transferase, g 75.5 22 0.00077 26.4 9.8 95 38-143 321-423 (499)
267 3lop_A Substrate binding perip 75.4 12 0.00041 26.5 7.1 75 27-104 143-228 (364)
268 3jy6_A Transcriptional regulat 75.3 16 0.00055 24.6 9.6 62 38-106 26-93 (276)
269 1qo2_A Molecule: N-((5-phospho 75.1 16 0.00056 24.6 7.9 79 57-137 145-239 (241)
270 4had_A Probable oxidoreductase 75.0 19 0.00064 25.6 8.0 105 24-139 22-131 (350)
271 2khz_A C-MYC-responsive protei 75.0 13 0.00045 23.8 6.5 114 23-144 9-151 (165)
272 3ohs_X Trans-1,2-dihydrobenzen 74.9 20 0.00067 25.4 8.0 32 108-139 78-111 (334)
273 1mxs_A KDPG aldolase; 2-keto-3 74.8 17 0.00058 24.6 7.5 89 39-131 17-109 (225)
274 3dii_A Short-chain dehydrogena 74.8 17 0.00056 24.5 8.8 79 25-104 2-81 (247)
275 2yw3_A 4-hydroxy-2-oxoglutarat 74.6 16 0.00055 24.3 12.1 88 48-142 103-198 (207)
276 2f9f_A First mannosyl transfer 74.3 14 0.00047 23.3 9.9 107 25-144 50-162 (177)
277 3nl6_A Thiamine biosynthetic b 74.2 28 0.00096 26.9 11.2 88 54-144 114-231 (540)
278 3e8x_A Putative NAD-dependent 74.2 6.7 0.00023 26.1 5.2 34 23-56 19-52 (236)
279 2h6r_A Triosephosphate isomera 74.1 17 0.00058 24.4 11.1 95 42-138 104-215 (219)
280 3mz0_A Inositol 2-dehydrogenas 74.0 21 0.00072 25.4 9.4 19 110-128 80-98 (344)
281 3sg0_A Extracellular ligand-bi 74.0 21 0.00071 25.3 8.5 85 27-114 161-256 (386)
282 3jr2_A Hexulose-6-phosphate sy 73.9 2.9 9.8E-05 28.1 3.2 75 58-136 46-127 (218)
283 3khj_A Inosine-5-monophosphate 73.9 17 0.00057 26.6 7.5 65 59-126 107-172 (361)
284 4h08_A Putative hydrolase; GDS 73.6 15 0.00052 23.5 10.3 79 26-106 21-119 (200)
285 3m2t_A Probable dehydrogenase; 73.5 21 0.00071 25.7 7.9 107 25-141 5-115 (359)
286 3moi_A Probable dehydrogenase; 73.4 20 0.0007 26.0 7.9 18 111-128 79-96 (387)
287 2aef_A Calcium-gated potassium 73.2 18 0.0006 24.1 8.4 89 28-125 34-123 (234)
288 2qzs_A Glycogen synthase; glyc 73.2 25 0.00086 25.9 10.7 107 25-142 321-439 (485)
289 2avd_A Catechol-O-methyltransf 73.1 17 0.00058 23.9 9.7 68 25-94 94-167 (229)
290 4eg0_A D-alanine--D-alanine li 73.1 5.5 0.00019 28.1 4.7 56 23-79 11-74 (317)
291 1rzu_A Glycogen synthase 1; gl 73.0 25 0.00087 25.9 11.4 107 25-142 320-438 (485)
292 1t0b_A THUA-like protein; treh 73.0 11 0.00039 25.9 6.1 49 25-76 7-73 (252)
293 3db2_A Putative NADPH-dependen 73.0 20 0.00067 25.7 7.7 33 107-139 77-111 (354)
294 2l69_A Rossmann 2X3 fold prote 72.9 12 0.0004 21.9 6.4 37 27-63 79-115 (134)
295 1eep_A Inosine 5'-monophosphat 72.9 19 0.00065 26.5 7.7 65 60-126 156-221 (404)
296 3oix_A Putative dihydroorotate 72.9 10 0.00035 27.6 6.1 57 86-142 262-326 (345)
297 2b2c_A Spermidine synthase; be 72.8 19 0.00065 25.6 7.4 69 25-95 132-211 (314)
298 1rpx_A Protein (ribulose-phosp 72.6 9.3 0.00032 25.6 5.6 115 28-145 95-230 (230)
299 1h7n_A 5-aminolaevulinic acid 72.5 9.4 0.00032 27.6 5.6 62 57-121 241-304 (342)
300 1wl8_A GMP synthase [glutamine 72.5 6.4 0.00022 25.5 4.6 76 28-106 3-80 (189)
301 3s5p_A Ribose 5-phosphate isom 72.3 7.9 0.00027 25.1 4.8 36 19-54 15-52 (166)
302 3l4b_C TRKA K+ channel protien 72.3 18 0.00061 23.8 8.5 95 25-126 23-118 (218)
303 2c6q_A GMP reductase 2; TIM ba 72.2 12 0.00042 27.1 6.4 56 70-126 132-188 (351)
304 1sxj_E Activator 1 40 kDa subu 72.1 11 0.00038 26.7 6.1 71 70-143 134-207 (354)
305 3aon_B V-type sodium ATPase su 72.0 14 0.00047 22.3 6.4 101 25-134 2-112 (115)
306 3tr6_A O-methyltransferase; ce 71.8 18 0.00062 23.6 9.6 68 25-94 89-162 (225)
307 1pv8_A Delta-aminolevulinic ac 71.7 8.8 0.0003 27.6 5.3 62 57-121 230-293 (330)
308 3o9z_A Lipopolysaccaride biosy 71.5 19 0.00065 25.4 7.2 109 25-141 3-119 (312)
309 4hjf_A Ggdef family protein; s 71.5 11 0.00037 27.1 6.0 105 36-142 212-329 (340)
310 2gk3_A Putative cytoplasmic pr 71.5 9.2 0.00031 26.4 5.4 65 38-107 42-127 (256)
311 3egc_A Putative ribose operon 71.4 21 0.00072 24.2 7.4 40 38-78 27-72 (291)
312 2agk_A 1-(5-phosphoribosyl)-5- 71.3 23 0.00077 24.5 7.6 78 60-139 162-257 (260)
313 4eso_A Putative oxidoreductase 71.2 21 0.00072 24.1 7.3 80 25-104 8-88 (255)
314 3ic5_A Putative saccharopine d 71.2 12 0.00042 21.5 8.6 90 25-124 5-97 (118)
315 3qk7_A Transcriptional regulat 71.1 22 0.00075 24.3 8.9 63 38-106 29-96 (294)
316 3ius_A Uncharacterized conserv 70.8 6.6 0.00022 26.9 4.6 32 24-56 4-35 (286)
317 3k9c_A Transcriptional regulat 70.8 22 0.00076 24.2 7.6 63 38-107 30-97 (289)
318 3h5l_A Putative branched-chain 70.7 27 0.00093 25.2 8.9 75 26-102 165-250 (419)
319 2b7n_A Probable nicotinate-nuc 70.7 24 0.00083 24.6 8.0 69 52-125 186-255 (273)
320 3r8r_A Transaldolase; pentose 70.5 19 0.00063 24.3 6.5 80 43-125 96-184 (212)
321 1viz_A PCRB protein homolog; s 70.4 6.6 0.00022 27.0 4.4 62 56-126 20-83 (240)
322 1iow_A DD-ligase, DDLB, D-ALA\ 70.4 3.4 0.00011 28.7 3.0 53 25-78 2-62 (306)
323 2jbm_A Nicotinate-nucleotide p 70.1 25 0.00087 24.9 7.5 69 52-125 201-270 (299)
324 3k4h_A Putative transcriptiona 69.8 23 0.00078 24.0 8.5 38 38-76 32-75 (292)
325 2j9r_A Thymidine kinase; TK1, 69.6 8.5 0.00029 26.0 4.7 34 70-105 101-135 (214)
326 1ka9_F Imidazole glycerol phos 69.5 23 0.00078 23.9 10.5 79 59-139 155-243 (252)
327 3q58_A N-acetylmannosamine-6-p 69.5 23 0.0008 23.9 7.0 63 57-125 90-154 (229)
328 3iwt_A 178AA long hypothetical 69.4 20 0.00067 23.1 6.4 45 36-80 40-91 (178)
329 3s1x_A Probable transaldolase; 69.4 23 0.00078 24.1 6.8 81 43-126 98-187 (223)
330 3ntv_A MW1564 protein; rossman 69.2 22 0.00076 23.6 7.9 66 25-94 95-164 (232)
331 3hp4_A GDSL-esterase; psychrot 68.9 19 0.00063 22.6 6.4 55 25-79 2-75 (185)
332 2e6f_A Dihydroorotate dehydrog 68.8 11 0.00038 26.6 5.5 57 86-142 232-295 (314)
333 3n74_A 3-ketoacyl-(acyl-carrie 68.7 24 0.00081 23.7 7.3 79 25-104 9-89 (261)
334 3e9m_A Oxidoreductase, GFO/IDH 68.7 17 0.00059 25.7 6.5 33 107-139 78-112 (330)
335 3l6u_A ABC-type sugar transpor 68.6 24 0.00083 23.9 8.8 66 38-107 27-98 (293)
336 3vzx_A Heptaprenylglyceryl pho 68.6 3.3 0.00011 28.3 2.5 58 60-126 22-81 (228)
337 3abi_A Putative uncharacterize 68.6 30 0.001 24.9 8.5 93 22-125 13-105 (365)
338 2jjm_A Glycosyl transferase, g 68.3 20 0.00067 25.6 6.9 65 71-143 285-349 (394)
339 2iuy_A Avigt4, glycosyltransfe 68.3 24 0.00084 24.5 7.2 43 37-80 35-94 (342)
340 3cbg_A O-methyltransferase; cy 68.2 23 0.0008 23.5 9.6 68 25-94 97-170 (232)
341 2ho3_A Oxidoreductase, GFO/IDH 68.2 28 0.00097 24.4 10.4 21 109-129 75-95 (325)
342 2l2q_A PTS system, cellobiose- 68.0 16 0.00055 21.5 5.8 75 25-106 4-84 (109)
343 3oa2_A WBPB; oxidoreductase, s 67.6 19 0.00067 25.4 6.6 108 25-140 3-119 (318)
344 3euw_A MYO-inositol dehydrogen 67.5 30 0.001 24.5 9.6 103 25-138 4-109 (344)
345 2b7n_A Probable nicotinate-nuc 67.5 25 0.00087 24.5 7.0 69 71-141 152-223 (273)
346 2nvw_A Galactose/lactose metab 67.5 38 0.0013 25.6 8.5 109 24-141 38-161 (479)
347 1ka9_H Imidazole glycerol phos 67.5 7.3 0.00025 25.5 4.1 45 25-76 2-46 (200)
348 3zv4_A CIS-2,3-dihydrobiphenyl 67.4 27 0.00093 24.0 7.5 79 25-103 5-84 (281)
349 2esr_A Methyltransferase; stru 67.4 17 0.00058 22.8 5.8 66 26-93 55-123 (177)
350 4fo4_A Inosine 5'-monophosphat 67.4 34 0.0012 25.0 13.8 100 25-126 120-239 (366)
351 3fro_A GLGA glycogen synthase; 67.2 32 0.0011 24.7 12.1 107 24-143 284-394 (439)
352 2y88_A Phosphoribosyl isomeras 67.2 25 0.00087 23.5 7.9 78 58-137 151-241 (244)
353 1xj5_A Spermidine synthase 1; 67.2 21 0.00071 25.6 6.7 70 25-95 144-224 (334)
354 1qap_A Quinolinic acid phospho 66.8 16 0.00055 25.9 5.9 53 86-140 196-248 (296)
355 3sy8_A ROCR; TIM barrel phosph 66.7 13 0.00046 27.1 5.7 97 42-140 282-391 (400)
356 1yb1_A 17-beta-hydroxysteroid 66.6 28 0.00094 23.7 9.0 80 24-104 30-114 (272)
357 2hmt_A YUAA protein; RCK, KTN, 66.6 18 0.00061 21.6 8.5 53 70-125 70-122 (144)
358 1ka9_F Imidazole glycerol phos 66.5 27 0.00091 23.5 8.9 69 57-127 32-104 (252)
359 3o74_A Fructose transport syst 66.5 26 0.00089 23.4 7.8 11 43-53 26-36 (272)
360 1iy9_A Spermidine synthase; ro 66.4 29 0.001 23.9 7.6 69 25-95 99-178 (275)
361 4evq_A Putative ABC transporte 66.3 31 0.0011 24.3 7.8 75 27-104 153-238 (375)
362 1wbh_A KHG/KDPG aldolase; lyas 66.1 27 0.00091 23.4 7.5 53 71-126 42-94 (214)
363 2lci_A Protein OR36; structura 66.1 17 0.00059 21.2 11.4 113 25-141 2-120 (134)
364 3fs2_A 2-dehydro-3-deoxyphosph 66.0 24 0.00082 25.1 6.6 67 57-125 170-258 (298)
365 1geq_A Tryptophan synthase alp 65.9 28 0.00094 23.5 9.4 42 85-127 179-220 (248)
366 2rgy_A Transcriptional regulat 65.7 29 0.00098 23.6 7.9 62 38-105 27-97 (290)
367 3tjx_A Dihydroorotate dehydrog 65.7 25 0.00087 25.3 6.9 58 86-143 265-329 (354)
368 3mwd_B ATP-citrate synthase; A 65.7 35 0.0012 24.6 12.7 113 27-143 170-316 (334)
369 3kke_A LACI family transcripti 65.7 30 0.001 23.7 8.5 66 36-107 32-103 (303)
370 2gjl_A Hypothetical protein PA 65.6 33 0.0011 24.3 9.0 61 57-126 84-144 (328)
371 4gnr_A ABC transporter substra 65.5 32 0.0011 24.1 9.1 88 26-116 145-240 (353)
372 2hqb_A Transcriptional activat 65.4 31 0.0011 23.9 7.6 38 38-76 26-69 (296)
373 3fwz_A Inner membrane protein 65.3 20 0.00069 21.7 6.3 53 24-78 6-58 (140)
374 3llv_A Exopolyphosphatase-rela 65.3 20 0.00068 21.6 6.3 51 26-78 7-57 (141)
375 2gpy_A O-methyltransferase; st 65.3 27 0.00091 23.1 8.1 68 25-94 78-148 (233)
376 1ydw_A AX110P-like protein; st 65.2 35 0.0012 24.4 8.7 32 108-139 83-116 (362)
377 3p9z_A Uroporphyrinogen III co 65.2 28 0.00096 23.3 8.4 108 25-142 110-225 (229)
378 3n0w_A ABC branched chain amin 64.9 34 0.0012 24.2 8.1 71 27-100 144-225 (379)
379 2kx7_A Sensor-like histidine k 64.9 16 0.00054 22.1 4.7 47 25-78 7-53 (117)
380 2o23_A HADH2 protein; HSD17B10 64.7 19 0.00065 24.2 5.9 78 25-103 12-91 (265)
381 3q2i_A Dehydrogenase; rossmann 64.7 35 0.0012 24.3 8.9 105 24-139 12-120 (354)
382 3ajx_A 3-hexulose-6-phosphate 64.7 26 0.0009 22.8 8.9 101 36-140 90-204 (207)
383 1z0s_A Probable inorganic poly 64.5 16 0.00056 25.6 5.5 92 26-142 30-121 (278)
384 4e38_A Keto-hydroxyglutarate-a 64.5 31 0.0011 23.5 9.7 73 47-125 125-200 (232)
385 2ehd_A Oxidoreductase, oxidore 64.2 28 0.00095 22.9 6.8 69 25-94 5-74 (234)
386 3st7_A Capsular polysaccharide 64.2 36 0.0012 24.2 8.6 80 26-107 1-95 (369)
387 1rd5_A Tryptophan synthase alp 64.1 32 0.0011 23.5 8.1 41 85-126 189-229 (262)
388 1ws6_A Methyltransferase; stru 64.1 22 0.00077 21.8 8.2 66 27-93 65-132 (171)
389 2nv1_A Pyridoxal biosynthesis 64.0 35 0.0012 24.0 7.5 57 85-142 195-258 (305)
390 2w6r_A Imidazole glycerol phos 64.0 31 0.0011 23.4 8.3 69 57-127 31-103 (266)
391 3c0k_A UPF0064 protein YCCW; P 63.9 37 0.0013 24.7 7.6 53 26-78 244-301 (396)
392 3orh_A Guanidinoacetate N-meth 63.6 17 0.00059 24.3 5.4 54 26-80 84-138 (236)
393 1ep3_A Dihydroorotate dehydrog 63.6 31 0.0011 24.0 7.0 56 86-142 230-291 (311)
394 1jub_A Dihydroorotate dehydrog 63.5 19 0.00066 25.3 5.9 40 86-125 229-269 (311)
395 3tdn_A FLR symmetric alpha-bet 63.3 31 0.0011 23.2 9.2 69 57-127 36-108 (247)
396 3ezl_A Acetoacetyl-COA reducta 63.3 31 0.001 23.1 8.2 81 24-105 12-98 (256)
397 1usg_A Leucine-specific bindin 63.0 35 0.0012 23.6 8.8 75 27-104 140-225 (346)
398 3r75_A Anthranilate/para-amino 62.9 22 0.00076 28.1 6.5 49 24-77 445-493 (645)
399 3zwt_A Dihydroorotate dehydrog 62.8 17 0.0006 26.5 5.6 40 86-125 285-325 (367)
400 1ujp_A Tryptophan synthase alp 62.8 36 0.0012 23.7 9.1 39 86-127 191-229 (271)
401 3lvu_A ABC transporter, peripl 62.8 30 0.001 23.2 6.6 55 25-80 129-187 (258)
402 1i4n_A Indole-3-glycerol phosp 62.7 35 0.0012 23.6 9.9 99 37-137 138-245 (251)
403 3lab_A Putative KDPG (2-keto-3 62.5 33 0.0011 23.2 7.5 66 54-125 118-185 (217)
404 1gox_A (S)-2-hydroxy-acid oxid 62.5 42 0.0014 24.4 9.8 87 39-127 215-309 (370)
405 3oec_A Carveol dehydrogenase ( 62.5 31 0.0011 24.2 6.8 79 25-104 46-141 (317)
406 3i23_A Oxidoreductase, GFO/IDH 62.4 18 0.00063 25.8 5.7 22 109-130 78-99 (349)
407 1xea_A Oxidoreductase, GFO/IDH 62.1 38 0.0013 23.8 7.4 22 109-130 76-97 (323)
408 4gmf_A Yersiniabactin biosynth 62.0 16 0.00056 26.7 5.4 104 24-143 6-117 (372)
409 3kjx_A Transcriptional regulat 62.0 38 0.0013 23.7 8.4 63 36-104 85-153 (344)
410 1mjf_A Spermidine synthase; sp 61.9 36 0.0012 23.5 8.7 67 25-95 98-182 (281)
411 2igt_A SAM dependent methyltra 61.9 37 0.0013 24.3 7.1 53 26-78 176-233 (332)
412 1mzh_A Deoxyribose-phosphate a 61.9 33 0.0011 23.0 6.7 54 69-122 144-199 (225)
413 2ydy_A Methionine adenosyltran 61.8 36 0.0012 23.4 8.0 32 25-56 2-33 (315)
414 3rot_A ABC sugar transporter, 61.6 35 0.0012 23.2 8.8 67 37-107 21-95 (297)
415 2f6u_A GGGPS, (S)-3-O-geranylg 61.3 36 0.0012 23.2 7.0 54 72-127 165-218 (234)
416 2o07_A Spermidine synthase; st 61.3 38 0.0013 23.8 7.1 68 25-94 119-197 (304)
417 1wxx_A TT1595, hypothetical pr 61.2 44 0.0015 24.2 7.6 53 26-78 232-287 (382)
418 3eaf_A ABC transporter, substr 61.2 42 0.0014 23.9 7.6 77 26-105 142-232 (391)
419 2fqx_A Membrane lipoprotein TM 61.2 39 0.0013 23.6 8.9 64 38-106 26-94 (318)
420 1vhc_A Putative KHG/KDPG aldol 61.0 35 0.0012 23.0 8.3 83 44-130 13-99 (224)
421 3r3h_A O-methyltransferase, SA 61.0 15 0.0005 24.9 4.7 68 25-94 85-158 (242)
422 3rwb_A TPLDH, pyridoxal 4-dehy 61.0 34 0.0012 22.9 6.8 79 25-104 6-86 (247)
423 3ll7_A Putative methyltransfer 60.9 19 0.00064 26.9 5.5 53 25-78 115-171 (410)
424 3evn_A Oxidoreductase, GFO/IDH 60.7 19 0.00065 25.4 5.5 34 107-140 78-113 (329)
425 3tb6_A Arabinose metabolism tr 60.5 36 0.0012 23.0 9.9 69 36-107 32-108 (298)
426 1eep_A Inosine 5'-monophosphat 60.4 48 0.0016 24.4 11.5 88 37-126 181-284 (404)
427 2p10_A MLL9387 protein; putati 60.4 42 0.0014 23.7 12.1 79 46-126 160-258 (286)
428 2dwc_A PH0318, 433AA long hypo 60.4 47 0.0016 24.3 8.1 32 24-56 18-49 (433)
429 3b0p_A TRNA-dihydrouridine syn 60.4 45 0.0015 24.0 7.9 63 61-125 149-223 (350)
430 3hm2_A Precorrin-6Y C5,15-meth 60.1 28 0.00095 21.6 6.5 74 25-103 49-125 (178)
431 1zgh_A Methionyl-tRNA formyltr 60.1 12 0.00041 26.1 4.1 53 24-77 29-84 (260)
432 1x1o_A Nicotinate-nucleotide p 60.0 42 0.0014 23.6 11.0 92 27-125 168-266 (286)
433 3usb_A Inosine-5'-monophosphat 59.4 57 0.002 24.9 12.8 101 25-127 268-388 (511)
434 3oqb_A Oxidoreductase; structu 59.4 47 0.0016 23.9 8.6 21 109-129 96-116 (383)
435 4eyg_A Twin-arginine transloca 59.2 43 0.0015 23.4 10.8 72 38-112 156-237 (368)
436 1njg_A DNA polymerase III subu 59.2 27 0.00094 22.5 5.8 72 70-143 126-199 (250)
437 3e3m_A Transcriptional regulat 59.0 44 0.0015 23.5 9.3 62 37-104 88-155 (355)
438 4adt_A Pyridoxine biosynthetic 59.0 45 0.0015 23.6 10.9 58 85-143 195-259 (297)
439 1tqj_A Ribulose-phosphate 3-ep 58.9 20 0.00068 24.2 5.0 95 43-140 106-219 (230)
440 3tha_A Tryptophan synthase alp 58.8 33 0.0011 23.7 6.1 47 87-133 77-129 (252)
441 3pfn_A NAD kinase; structural 58.7 51 0.0017 24.1 9.1 101 25-144 38-164 (365)
442 2dul_A N(2),N(2)-dimethylguano 58.7 51 0.0017 24.1 11.1 77 26-107 72-165 (378)
443 1uir_A Polyamine aminopropyltr 58.5 45 0.0015 23.5 8.3 69 25-95 101-184 (314)
444 3md9_A Hemin-binding periplasm 58.3 39 0.0013 22.7 6.8 73 63-142 53-125 (255)
445 1qap_A Quinolinic acid phospho 58.2 47 0.0016 23.5 11.2 91 28-125 182-278 (296)
446 4dqx_A Probable oxidoreductase 58.2 42 0.0014 23.0 7.4 79 25-104 27-107 (277)
447 3ew7_A LMO0794 protein; Q8Y8U8 58.1 23 0.00077 22.9 5.2 31 26-56 1-31 (221)
448 3m6w_A RRNA methylase; rRNA me 58.0 31 0.0011 26.1 6.4 51 26-78 127-178 (464)
449 3e61_A Putative transcriptiona 57.8 39 0.0014 22.6 7.3 62 38-107 27-95 (277)
450 1vcf_A Isopentenyl-diphosphate 57.7 26 0.00088 25.0 5.7 72 56-129 193-288 (332)
451 3igs_A N-acetylmannosamine-6-p 57.5 41 0.0014 22.7 7.7 63 57-125 90-154 (232)
452 1w8s_A FBP aldolase, fructose- 57.4 44 0.0015 23.0 7.0 72 69-144 171-253 (263)
453 2hsj_A Putative platelet activ 57.3 23 0.0008 22.7 5.1 84 23-107 32-133 (214)
454 3evz_A Methyltransferase; NYSG 57.3 29 0.00099 22.7 5.7 52 25-78 79-131 (230)
455 3hcw_A Maltose operon transcri 57.3 43 0.0015 22.8 8.4 65 37-107 30-100 (295)
456 3g1w_A Sugar ABC transporter; 57.0 43 0.0015 22.8 8.1 67 37-107 22-95 (305)
457 1vhc_A Putative KHG/KDPG aldol 57.0 42 0.0014 22.6 7.3 71 48-124 109-183 (224)
458 2b78_A Hypothetical protein SM 56.8 42 0.0015 24.4 6.8 52 27-78 237-293 (385)
459 3l6e_A Oxidoreductase, short-c 56.8 40 0.0014 22.4 7.1 79 26-104 4-83 (235)
460 2glx_A 1,5-anhydro-D-fructose 56.8 48 0.0016 23.2 7.8 8 70-77 62-69 (332)
461 1j8m_F SRP54, signal recogniti 56.7 31 0.001 24.3 5.9 53 25-78 126-188 (297)
462 1qop_A Tryptophan synthase alp 56.7 45 0.0016 22.9 8.8 40 86-127 194-234 (268)
463 1jvn_A Glutamine, bifunctional 56.7 67 0.0023 24.9 10.8 80 58-139 454-544 (555)
464 2qjg_A Putative aldolase MJ040 56.6 44 0.0015 22.8 12.4 75 63-143 173-258 (273)
465 3i09_A Periplasmic branched-ch 56.6 49 0.0017 23.3 9.2 71 27-100 142-223 (375)
466 1jr2_A Uroporphyrinogen-III sy 56.3 46 0.0016 22.9 9.3 108 24-139 20-151 (286)
467 3m4x_A NOL1/NOP2/SUN family pr 56.2 44 0.0015 25.2 6.9 52 26-79 131-184 (456)
468 3sho_A Transcriptional regulat 56.1 36 0.0012 21.6 9.9 83 27-112 41-128 (187)
469 1nvm_A HOA, 4-hydroxy-2-oxoval 55.8 39 0.0013 24.3 6.4 43 83-125 67-111 (345)
470 4dyv_A Short-chain dehydrogena 55.7 32 0.0011 23.5 5.8 79 25-104 28-108 (272)
471 3nav_A Tryptophan synthase alp 55.5 50 0.0017 23.0 8.6 97 29-127 130-237 (271)
472 3adn_A Spermidine synthase; am 55.2 7.4 0.00025 27.4 2.5 69 25-95 107-187 (294)
473 3e82_A Putative oxidoreductase 55.1 55 0.0019 23.5 8.9 32 108-139 79-112 (364)
474 1f76_A Dihydroorotate dehydrog 55.0 19 0.00064 25.7 4.6 40 86-125 276-316 (336)
475 2i2c_A Probable inorganic poly 55.0 49 0.0017 22.8 9.1 74 39-144 18-93 (272)
476 3nrc_A Enoyl-[acyl-carrier-pro 54.9 47 0.0016 22.6 7.4 80 25-105 26-110 (280)
477 3tqp_A Enolase; energy metabol 54.9 39 0.0013 25.3 6.4 71 57-129 264-339 (428)
478 2chg_A Replication factor C sm 54.9 34 0.0012 21.7 5.6 71 70-142 102-174 (226)
479 1f0k_A MURG, UDP-N-acetylgluco 54.7 52 0.0018 23.0 7.8 53 85-141 264-322 (364)
480 3oti_A CALG3; calicheamicin, T 54.7 25 0.00086 25.2 5.3 37 21-57 16-56 (398)
481 3oy2_A Glycosyltransferase B73 54.7 56 0.0019 23.3 10.1 107 25-143 215-354 (413)
482 3k7p_A Ribose 5-phosphate isom 54.7 16 0.00055 24.0 3.7 114 22-141 19-165 (179)
483 2vpi_A GMP synthase; guanine m 54.6 12 0.00041 25.1 3.3 49 25-77 24-74 (218)
484 3o4f_A Spermidine synthase; am 54.6 15 0.00051 26.1 3.9 69 26-96 108-188 (294)
485 2o3a_A UPF0106 protein AF_0751 54.5 35 0.0012 22.2 5.2 61 27-94 35-97 (178)
486 3op4_A 3-oxoacyl-[acyl-carrier 54.5 39 0.0014 22.6 6.0 80 25-104 9-89 (248)
487 2yzr_A Pyridoxal biosynthesis 54.4 43 0.0015 24.2 6.3 58 85-143 228-292 (330)
488 3ctl_A D-allulose-6-phosphate 54.4 47 0.0016 22.5 7.6 81 57-140 14-101 (231)
489 1vzw_A Phosphoribosyl isomeras 54.4 46 0.0016 22.3 11.4 80 57-138 147-239 (244)
490 4dzz_A Plasmid partitioning pr 54.3 39 0.0013 21.5 8.5 52 24-79 29-84 (206)
491 3l49_A ABC sugar (ribose) tran 54.2 47 0.0016 22.4 7.3 7 73-79 89-95 (291)
492 3uuw_A Putative oxidoreductase 54.1 52 0.0018 22.8 7.5 103 25-140 6-112 (308)
493 4fe7_A Xylose operon regulator 54.1 26 0.0009 25.5 5.4 63 37-107 42-106 (412)
494 3gvc_A Oxidoreductase, probabl 54.0 34 0.0012 23.5 5.7 79 25-104 29-109 (277)
495 3bbl_A Regulatory protein of L 53.9 48 0.0016 22.4 9.3 39 38-77 27-71 (287)
496 3e18_A Oxidoreductase; dehydro 53.9 58 0.002 23.3 9.3 103 25-140 5-111 (359)
497 3iwp_A Copper homeostasis prot 53.9 56 0.0019 23.1 6.9 91 33-125 136-236 (287)
498 2jbm_A Nicotinate-nucleotide p 53.9 42 0.0014 23.8 6.2 54 86-141 184-238 (299)
499 3ppi_A 3-hydroxyacyl-COA dehyd 53.8 49 0.0017 22.5 7.9 79 25-105 30-110 (281)
500 2hnk_A SAM-dependent O-methylt 53.8 45 0.0015 22.1 9.9 68 25-94 85-169 (239)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.97 E-value=3.4e-30 Score=166.08 Aligned_cols=121 Identities=26% Similarity=0.413 Sum_probs=112.1
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcc
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKI 99 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~ 99 (145)
+++++||||||++..+..++..|+..||. +..+.++.+|++.+.. ..||+|++|+.||+++|+++++.+|+. .+++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~-~~~DlillD~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999999999997 6689999999999987 679999999999999999999999974 4689
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|||++|+..+.+....+++.|+++|+.||++.++|..+|++++++
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998875
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.95 E-value=9.1e-26 Score=142.57 Aligned_cols=118 Identities=25% Similarity=0.410 Sum_probs=110.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv 102 (145)
+.+||++||++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.||+++|+++++.+++. .+.+|+|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~-~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT-BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 3579999999999999999999999999999999999999987 679999999999999999999999875 3678999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
++|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998875
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.94 E-value=1.6e-25 Score=140.93 Aligned_cols=119 Identities=29% Similarity=0.453 Sum_probs=111.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+||++||++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+++|.++++.+++.. ++|+|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlii~D~~~p~~~g~~~~~~lr~~~-~~~ii~~ 79 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEVCREVRKKY-DMPIIML 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-TCCSEEEEETTSTTTHHHHHHHHHHTTC-CSCEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEE
Confidence 4579999999999999999999999999999999999999987 6799999999999999999999999754 7899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
++..+......+++.|+++|+.||++.++|..++++++++.
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~~ 120 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred ECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988763
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.94 E-value=4.3e-25 Score=141.89 Aligned_cols=119 Identities=20% Similarity=0.323 Sum_probs=111.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv 102 (145)
+.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.+++. .+.+|+|
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii 82 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK-NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPIL 82 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEE
Confidence 4689999999999999999999999999999999999999987 679999999999999999999999974 4578999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 83 ~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 83 MLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998865
No 5
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.93 E-value=1.5e-24 Score=138.08 Aligned_cols=121 Identities=30% Similarity=0.415 Sum_probs=110.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~i 101 (145)
+++||++||++..+..++..|+..||. +..+.++.+++..+.....||+|++|+.||+++|+++++.+++. .+.+|+
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pi 84 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPI 84 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeE
Confidence 467999999999999999999999996 88999999999988763469999999999999999999999974 368999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
|++|+..+......+++.|+++|+.||++.++|..+++++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~~ 128 (129)
T 3h1g_A 85 IMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN 128 (129)
T ss_dssp EEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC
T ss_pred EEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999998753
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.93 E-value=2.3e-27 Score=150.54 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=102.6
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
.+++|||+||++..+..++..|+..||.+. ++.++++|++.+.+ ..||+||+|+.||+++|+++++.+++. ++|+|
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~-~~~DlvllDi~mP~~~G~el~~~lr~~--~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK-GQFDIAIIDVNLDGEPSYPVADILAER--NVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH-CCSSEEEECSSSSSCCSHHHHHHHHHT--CCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHcC--CCCEE
Confidence 467899999999999999999999999986 78999999999988 689999999999999999999999974 68999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++|+..+... +.+.|+++|+.||++.++|..++.++.++
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 9998776543 34679999999999999999999887653
No 7
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.93 E-value=4.8e-24 Score=134.98 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=111.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+||++||++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|.++++.+++..+.+|+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD-VRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG-CCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999999999999999999999999999877 579999999999999999999999988889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 82 TGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 8
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.93 E-value=2e-24 Score=136.24 Aligned_cols=119 Identities=23% Similarity=0.366 Sum_probs=111.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+||++||++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+.+|.++++.+++..+.+|+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 3579999999999999999999999999999999999999877 579999999999999999999999988889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988764
No 9
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.93 E-value=1.8e-24 Score=137.48 Aligned_cols=121 Identities=21% Similarity=0.359 Sum_probs=106.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+.+||++|+++..+..++..|+..||.+..+.++.++++.+.. ..||+|++|+.+++.+|+++++.+++..+.+|+|+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLV 84 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT-CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 35689999999999999999999999999999999999999977 67999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCC-CHHHHHHHHHHHHhcC
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPL-SVDKILPLMEDLMKNN 145 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~-~~~~L~~~i~~~~~~~ 145 (145)
+++..+......+++.|+++|+.||+ +.++|...++++++++
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 99999999999999999999999999 8999999999988753
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.93 E-value=4.3e-25 Score=148.81 Aligned_cols=118 Identities=22% Similarity=0.284 Sum_probs=111.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|||+||++..+..++..|+..||.|.++.++.+|++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 85 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA-EKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVL 85 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT-SCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999999999999999999999999987 679999999999999999999999998889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 86 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 86 TGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred eCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976654
No 11
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.93 E-value=4.5e-24 Score=136.32 Aligned_cols=119 Identities=23% Similarity=0.314 Sum_probs=111.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+++|.++++.+++..+.+|+|++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-EFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMV 81 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEE
Confidence 3579999999999999999999999999999999999999987 579999999999999999999999988889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 82 TGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 12
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.93 E-value=1.6e-24 Score=138.92 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=113.2
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
..+++|||+|+++..+..++..|+..|+.+..+.+..++++.+.. ..||+||+|+.+++.+|+++++.+++..+.+|+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 346789999999999999999999999999999999999999987 5799999999999999999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.93 E-value=5.7e-24 Score=139.30 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=112.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~i 101 (145)
.+.+|||+|+++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.+|+.+|+++++.+++.. +.+|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL-TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT-CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 45789999999999999999999999999999999999999987 6799999999999999999999999863 68999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864
No 14
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.93 E-value=5.3e-24 Score=138.71 Aligned_cols=123 Identities=28% Similarity=0.397 Sum_probs=113.2
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
...+++|||+|+++..+..++..|+..| +.+..+.+..++++.+.. ..||+||+|+.+++.+|.++++.+++..+.+
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK-ESVDIAILDVEMPVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT-SCCSEEEECSSCSSSCHHHHHHHHHHTTCSC
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc-cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 3457799999999999999999999877 778899999999999987 6799999999999999999999999988899
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
|+|++++..+......+++.|+++|+.||++.++|..+|+++++++
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999998753
No 15
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.93 E-value=7.7e-24 Score=138.36 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=113.5
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+.+|||+|+++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.+++++|+++++.+++..+.+|+|+
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 91 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRIL 91 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEE
Confidence 45789999999999999999999999999999999999999987 67999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhC-CceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAG-LDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g-~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.| +++|+.||++.++|..+|++++++
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999988764
No 16
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.93 E-value=8.6e-24 Score=132.61 Aligned_cols=118 Identities=27% Similarity=0.435 Sum_probs=110.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++||++||++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|.++++.+++..+.+|+|+++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 79 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 368999999999999999999999999999999999999987 5799999999999999999999999887889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp SCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 17
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.93 E-value=6.7e-24 Score=135.85 Aligned_cols=121 Identities=26% Similarity=0.322 Sum_probs=111.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~iv 102 (145)
.+.+|||+|+++..+..++..|+..||.+..+.+..+++..+.....||+||+|+.+++.+|+++++.+++. .+.+|+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii 85 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSII 85 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEE
Confidence 357899999999999999999999999999999999999998873349999999999999999999999987 6889999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..+|+++.++
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 86 VVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998865
No 18
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.92 E-value=1.4e-23 Score=131.94 Aligned_cols=118 Identities=21% Similarity=0.368 Sum_probs=109.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+||++|+++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+.+|.++++.+++ .+.+|+|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~-~~~~~ii~~ 79 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENGLMLTRALRE-RSTVGIILV 79 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc-CCCCEEEEeCCCCCCChHHHHHHHHh-cCCCCEEEE
Confidence 3579999999999999999999999999999999999998887 57999999999999999999999998 678999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999988764
No 19
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.92 E-value=4.9e-24 Score=133.65 Aligned_cols=117 Identities=29% Similarity=0.458 Sum_probs=108.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+++||++|+++..+..++..|+..||. +..+.++.++++.+.. ..||++++|+.+|+.+|.++++.+++..+.+|+|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~-~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIV 80 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEE
Confidence 467999999999999999999999999 4589999999999887 57999999999999999999999998888899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+++..+......+++.|+++|+.||++.++|...+++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998865
No 20
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.92 E-value=1e-23 Score=136.05 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=112.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+.+|||+|+++..+..++..|+..||.+..+.+..+++..+.. ...||+||+|+.+++.+|+++++.+++..+.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4689999999999999999999999999999999999999873 257999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 21
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.92 E-value=3.4e-24 Score=140.79 Aligned_cols=120 Identities=25% Similarity=0.400 Sum_probs=113.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCC--CccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGA--KFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
++++|||+|+++..+..++..|+..||.+. .+.+..++++.+.. . .||+||+|+.+++++|+++++.+++..+.+|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~-~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN-HYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-cCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 467899999999999999999999999998 99999999999987 5 6899999999999999999999999889999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+|++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 157 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988753
No 22
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.92 E-value=9.1e-24 Score=136.84 Aligned_cols=119 Identities=26% Similarity=0.344 Sum_probs=106.4
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc----CCcc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM----GIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~----~~~~ 99 (145)
.+++|||+||++..+..++..|+..||.+..+.+++++++.+.. ..||+||+|+.||+++|+++++.+++. .+.+
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~ 91 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYT 91 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCC
Confidence 45789999999999999999999999999999999999999987 679999999999999999999999852 3568
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|+|++++..+......+++.|+++|+.||++.++|...+.++..
T Consensus 92 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 92 PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred eEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
No 23
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.92 E-value=1.4e-24 Score=139.30 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=112.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.+++ .+|+++++.+++..+.+|+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii 84 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS-DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTI 84 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC-TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEE
Confidence 4689999999999999999999999999999999999998876 67999999999999 99999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 85 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 85 VMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998864
No 24
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.92 E-value=1.5e-23 Score=134.22 Aligned_cols=119 Identities=24% Similarity=0.506 Sum_probs=107.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe-EEEEcCHHHHHHHHHc----CCCccEEEEecCCCCCCHHHHHHHHHh-cCCc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK-VEVAENGKEAVDLFRS----GAKFDIVFIDKEMPVMNGIEATREIRS-MGIK 98 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~----~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~ 98 (145)
+++|||+||++..+..++..|+..||. +..+.++.++++.+.. ...||+||+|+.||+++|+++++.+++ ..+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 357999999999999999999988975 7799999999998764 136999999999999999999999997 4567
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|+|++|+..+......+++.|+++|+.||++.++|...+++++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998765
No 25
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.92 E-value=7.9e-24 Score=148.85 Aligned_cols=120 Identities=32% Similarity=0.434 Sum_probs=113.5
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+++|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.+++..+.+|+|+
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 100 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-TRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALF 100 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999999999999999999999999999987 57999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988763
No 26
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.92 E-value=2.3e-24 Score=137.57 Aligned_cols=119 Identities=23% Similarity=0.250 Sum_probs=109.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
++||++|+++..+..++..|+..||.+. ++.++.++++.+.. ..||+|++|+.+++.+|.++++.+++..+.+|+|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 80 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh-cCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEE
Confidence 6899999999999999999999999988 89999999999987 579999999999999999999999998889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
++..+......+++.|+++|+.||++.++|..+++++++++
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 81 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp ECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred eCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99998888999999999999999999999999999998763
No 27
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.92 E-value=4.4e-25 Score=141.43 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=111.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcC-CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLG-FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
.+.+|||+||++..+..++..|+..| |.+.++.++.++++.+.. ..||+||+|+.+|+.+|+++++.+++..+.+|+|
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 91 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD-TRPGIVILDLGGGDLLGKPGIVEARALWATVPLI 91 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT-CCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc-cCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEE
Confidence 35689999999999999999999999 999999999999998876 6799999999999999999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 92 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 92 AVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999998765
No 28
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.92 E-value=1.5e-23 Score=134.01 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=109.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+||++||++..+..++..|+..| +.+..+.++.++++.+.. ..||++|+|+.+|+++|.++++.+++..+.+|+|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~-~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE-YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh-cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 3579999999999999999999876 456689999999999877 5799999999999999999999999888899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999988764
No 29
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.92 E-value=9.4e-24 Score=135.76 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=110.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||++|+|+.+|+.+|.++++.+++..+.+|+|+++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls 83 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIAT 83 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH-HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999889999999999999999887 5799999999999999999999999888889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..++++++++
T Consensus 84 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 84 AHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 30
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.92 E-value=4.1e-24 Score=138.49 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=113.0
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcC-CeEEEEcCHHHHHHHHHcC-CCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLG-FKVEVAENGKEAVDLFRSG-AKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~al~~~~~~-~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
...+.+|||+|+++..+..++..|+..| |.+..+.+..+++..+... ..||+||+|+.+++++|+++++.+++..+.+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 3456789999999999999999999998 9999999999888776542 4699999999999999999999999988899
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+|++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999875
No 31
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.92 E-value=5.7e-24 Score=134.68 Aligned_cols=118 Identities=21% Similarity=0.376 Sum_probs=107.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv 102 (145)
+.+|||+|+++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.+++.+|+++++.+++. .+.+|+|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFV 81 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEE
Confidence 4689999999999999999999999999999999999999987 679999999999999999999999987 6789999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+... ..++..|+++|+.||++.++|..+++...++
T Consensus 82 ~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 82 AVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 9999888777 7889999999999999999999999987764
No 32
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.92 E-value=4.3e-23 Score=129.85 Aligned_cols=117 Identities=21% Similarity=0.359 Sum_probs=109.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++|+++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+.+|.++++.+++. +.+|+++++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEEE
Confidence 479999999999999999999899999999999999999987 579999999999999999999999987 688999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..++++++++
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999998899999999999999999999999999988764
No 33
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.92 E-value=3.6e-23 Score=131.04 Aligned_cols=119 Identities=30% Similarity=0.412 Sum_probs=109.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC-eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~~i 101 (145)
+++||++|+++..+..++..|+..|| .+..+.++.++++.+.. ..||++++|+.+|+++|.++++.+++ ..+.+|+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~i 82 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPV 82 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT-CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcE
Confidence 46799999999999999999999999 68899999999999876 57999999999999999999999997 4567899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 83 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 83 LMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988753
No 34
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.92 E-value=5.6e-24 Score=136.94 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=112.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH-cCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHh--cCCcce
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS-LGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRS--MGIKIK 100 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~--~~~~~~ 100 (145)
+.+|||+||++..+..++..|+. .||.+..+.++.++++.+.....||+||+|+.++ +.+|+++++.+++ ..+.+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 56899999999999999999999 8999999999999999886524699999999999 9999999999998 778999
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+|++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998875
No 35
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.92 E-value=7.1e-24 Score=136.34 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=110.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~~iv 102 (145)
+.+|||+|+++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.+++.+|+++++.+++ ..+.+|+|
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR-RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIV 84 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 4689999999999999999999999999999999999999987 67999999999999999999999998 56789999
Q ss_pred EEeCCCCHHHHH-HHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAERE-AFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~-~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+..... .+++.|+++|+.||++.++|..+|++++++
T Consensus 85 ~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 85 VVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 999987777666 889999999999999999999999998875
No 36
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.92 E-value=3.9e-23 Score=134.78 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=112.5
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
...+.+|||+|+++..+..++..|+..|+. +..+.+..++++.+.. ..||+||+|+.+++.+|+++++.+++..+.+
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA-HLPDVALLDYRMPGMDGAQVAAAVRSYELPT 90 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCSC
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 345678999999999999999999998854 4589999999999987 5799999999999999999999999988899
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhcC
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 145 (145)
|+|++++..+......+++.|+++|+.||++.++|..+++++++++
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999998753
No 37
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.92 E-value=1.8e-23 Score=133.70 Aligned_cols=120 Identities=26% Similarity=0.408 Sum_probs=110.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++.+|||+|+++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|.++++.+++..+.+|+|+
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-EKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh-cCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 35689999999999999999999999999999999999998877 57999999999999999999999998878899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99988887788899999999999999999999999988764
No 38
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.91 E-value=4.3e-23 Score=129.09 Aligned_cols=117 Identities=27% Similarity=0.443 Sum_probs=108.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++||++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+.+|.++++.+++. +.+|+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHHHHHHhC-CCCCEEEEe
Confidence 379999999999999999999999999999999999999877 579999999999999999999999974 678999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999988889999999999999999999999999988765
No 39
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.91 E-value=3.2e-23 Score=133.95 Aligned_cols=119 Identities=23% Similarity=0.299 Sum_probs=111.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcce
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIK 100 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~~ 100 (145)
+.+|||+|+++..+..++..|+..|+. +..+.++.++++.+.. ..||+||+|+.+++.+|+++++.+++ ..+.+|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT-CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 568999999999999999999999987 7899999999999987 67999999999999999999999998 567899
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCC-CHHHHHHHHHHHHhc
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPL-SVDKILPLMEDLMKN 144 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~-~~~~L~~~i~~~~~~ 144 (145)
+|++++..+......+++.|+++|+.||+ +.++|..+|++++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999998864
No 40
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.91 E-value=2.3e-23 Score=132.51 Aligned_cols=119 Identities=17% Similarity=0.318 Sum_probs=109.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~i 101 (145)
+++||++||++..+..++..|+.. ||.+. .+.++.++++.+.. ..||++++|+.+|+++|+++++.+++. .+..|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-KRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 468999999999999999999987 88876 89999999999877 579999999999999999999999985 567899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998765
No 41
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.91 E-value=2.8e-23 Score=130.76 Aligned_cols=118 Identities=23% Similarity=0.409 Sum_probs=103.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~ 103 (145)
.+||++||++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|.++++.+++. .+.+|+|+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 80 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA 80 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEE
Confidence 479999999999999999999999999999999999998877 579999999999999999999999975 35789999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99988888888999999999999999999999999998765
No 42
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.91 E-value=3.4e-23 Score=132.98 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=109.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+++|+++++.+++.. .+|+|++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~-~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-CCCSEEEEESEETTEEHHHHHHHHHTTC-CCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHccCC-CCCEEEE
Confidence 4689999999999999999999889999999999999999987 5799999999999999999999999865 8899999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888753
No 43
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.91 E-value=6e-23 Score=133.88 Aligned_cols=120 Identities=18% Similarity=0.321 Sum_probs=109.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHH--------cCCCccEEEEecCCCCCCHHHHHHHHH
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFR--------SGAKFDIVFIDKEMPVMNGIEATREIR 93 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~--------~~~~~dlvl~d~~~~~~~~~~~~~~l~ 93 (145)
++++|||+||++..+..++..|+..|+ .+..+.++.++++.+. ....||+||+|+.+++++|+++++.++
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357899999999999999999999998 8999999999999985 235799999999999999999999999
Q ss_pred h--cCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 94 S--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 94 ~--~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+ ..+.+|+|++++..+......+++.|+++|+.||++.++|..+|+++.+
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 8 5678999999999999999999999999999999999999999988764
No 44
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.91 E-value=9.3e-23 Score=131.19 Aligned_cols=120 Identities=22% Similarity=0.366 Sum_probs=111.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHH-cCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKS-LGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~-~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~ 99 (145)
.+++|||+|+++..+..++..|+. .||. +..+.+..+++..+.. ..||+||+|+.+++.+|+++++.+++ ..+.+
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-VKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh-cCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 357899999999999999999999 8999 8899999999999987 57999999999999999999999998 56789
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998865
No 45
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.91 E-value=4.8e-23 Score=132.74 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=112.0
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++.+||++|+++..+..++..|+..||.+..+.+..++++.+.. ..||+||+|+ +++.+|.++++.+++..+.+|+|+
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-EKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT-SCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-cCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 35689999999999999999999999999999999999999987 6799999999 999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998865
No 46
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.91 E-value=3.6e-23 Score=131.20 Aligned_cols=119 Identities=23% Similarity=0.396 Sum_probs=109.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC-eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~i 101 (145)
+++||++||++..+..++..|+..|| .+..+.++.++++.+.. ..||++++|+.+|+.+|.++++.+++. .+.+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~i 84 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAF 84 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT-SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc-CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 46799999999999999999998899 78899999999999987 679999999999999999999999975 468899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 85 IILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
No 47
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.91 E-value=7.9e-23 Score=133.27 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=110.6
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++.+|||+|+++..+..+...|+. ||.+..+.++.++++.+....+||+||+|+.+++.+|+++++.+++..+.+|+|+
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 81 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLM 81 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEE
Confidence 356899999999999999999975 8999999999999999987334699999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhC-CceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAG-LDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g-~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......++..| +++|+.||++.++|..+|.+++++
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999988764
No 48
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.91 E-value=5.7e-24 Score=134.48 Aligned_cols=119 Identities=26% Similarity=0.386 Sum_probs=110.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~iv 102 (145)
+.+||++||++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+.+|.++++.+++.. +.+|+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS-SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 4579999999999999999999999999999999999988876 5799999999999999999999999864 789999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 999998888888999999999999999999999999998865
No 49
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.91 E-value=1.3e-22 Score=130.99 Aligned_cols=121 Identities=18% Similarity=0.254 Sum_probs=111.4
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcC----CCccEEEEecCCCCCCHHHHHHHHHh---
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSG----AKFDIVFIDKEMPVMNGIEATREIRS--- 94 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~----~~~dlvl~d~~~~~~~~~~~~~~l~~--- 94 (145)
.+++|||+|+++..+..++..|+..|+ .+..+.++.++++.+... ..||+||+|+.+|+.+|+++++.+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 457899999999999999999999998 888999999999988751 36999999999999999999999998
Q ss_pred -cCCcceEEEEeCCCCHHHHHHHHHhC-CceeecCCCCHHHHHHHHHHHHhc
Q 048318 95 -MGIKIKIVGVTSLNSEAEREAFMQAG-LDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 95 -~~~~~~iv~l~~~~~~~~~~~~~~~g-~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
..+.+|+|++++..+......++..| +++|+.||++.++|..+|++...+
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999 999999999999999999988764
No 50
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.91 E-value=1.2e-22 Score=129.30 Aligned_cols=118 Identities=28% Similarity=0.365 Sum_probs=104.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~iv 102 (145)
+.+|||+|+++..+..++..|+..||.+.++.+..++++.+.. ..||+||+|+.+++.+|.++++.+++.. +..+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKIL 84 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEE
Confidence 5689999999999999999999999999999999999999987 6799999999999999999999999865 355666
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..... ....+++.|+++|+.||++.++|..+|++...+
T Consensus 85 ~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 85 VVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 55555555 788899999999999999999999999988764
No 51
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.91 E-value=5.6e-23 Score=140.91 Aligned_cols=119 Identities=35% Similarity=0.593 Sum_probs=106.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCC-eEEEEcCHHHHHHHHHcC------------CCccEEEEecCCCCCCHHHHHH
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGF-KVEVAENGKEAVDLFRSG------------AKFDIVFIDKEMPVMNGIEATR 90 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~~~~~------------~~~dlvl~d~~~~~~~~~~~~~ 90 (145)
.+.+|||+||++..+..++.+|+..|| .+..+.++.+|++.+... ..||+||+|+.||+++|+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 456899999999999999999999998 899999999999998752 2699999999999999999999
Q ss_pred HHHhc----CCcceEEEEeCCC-CHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 91 EIRSM----GIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 91 ~l~~~----~~~~~iv~l~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
.+++. .+.+|||++++.. +......+++.|+++|+.||++ +|...|++++++
T Consensus 140 ~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 140 EIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp HHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC--
T ss_pred HHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhh
Confidence 99974 5789999999987 7788889999999999999998 999999888764
No 52
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.91 E-value=3.1e-23 Score=132.17 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=104.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv 102 (145)
+.+|||+|+++..+..++..|+ .||.+..+.++.++++.+.. ..||+||+|+.+++.+|+++++.+++. .+.+|+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii 81 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVI 81 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEE
Confidence 5689999999999999999998 89999999999999999987 679999999999999999999999986 4589999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+... ..++..|+++|+.||++.++|..++++++++
T Consensus 82 ~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 82 FVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 9999887777 8899999999999999999999999999864
No 53
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.91 E-value=6.5e-23 Score=131.59 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=111.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcCCcc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMGIKI 99 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~ 99 (145)
+++|||+|+++..+..++..|+..||.+..+.+..++++.+.. ..||+||+|+.++ +.+|+++++.+++..+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 4689999999999999999999999999999999999999987 6799999999999 899999999999988899
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 82 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 82 PVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 999999999988999999999999999999999999999998865
No 54
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.91 E-value=5.3e-23 Score=133.26 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=111.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~~i 101 (145)
++++|||+|+++..+..++..|+..||.+..+.++.+++..+.. ..||+||+|+.+++.+|+++++.+++ ..+.+|+
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 85 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK-THPHLIITEANMPKISGMDLFNSLKKNPQTASIPV 85 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 46789999999999999999999999999999999999999987 57999999999999999999999998 5678999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 86 IALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988753
No 55
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.91 E-value=1.3e-22 Score=132.46 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=111.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+++|||+|+++..+..++..|+..||.+..+.++.+++..+.. ..||+||+|+.+++.+|+++++.+++..+.+|+|+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG-TSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT-SCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 45789999999999999999999999999999999999999987 57999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhC-CceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAG-LDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g-~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......++..| +++|+.||++.++|...+++++++
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 99999888889999998 999999999999999999988753
No 56
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.91 E-value=3.8e-23 Score=145.54 Aligned_cols=118 Identities=21% Similarity=0.361 Sum_probs=111.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|||+||++..+..++..|+..||.+..+.++.+++..+.. ..||+||+|+.+|+++|+++++.+++ .+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-DHPDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-SCCSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEE
Confidence 4689999999999999999999999999999999999999987 67999999999999999999999998 578999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..+|+.++++
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998865
No 57
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.91 E-value=1e-22 Score=130.65 Aligned_cols=119 Identities=22% Similarity=0.262 Sum_probs=111.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhcCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~~~~~~i 101 (145)
.+++|||+|+++..+..++..|+..||.+. .+.+..+++..+.. ..||+||+|+.++ +.+|+++++.+++. +.+|+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVETAARLAAG-CNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence 467899999999999999999999999999 69999999999987 5799999999998 79999999999987 88999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 58
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.91 E-value=4.8e-23 Score=142.23 Aligned_cols=119 Identities=25% Similarity=0.418 Sum_probs=112.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|||+||++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|+++++.+++..+.+|+|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~l 80 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-EPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML 80 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999999999999999999999999887 679999999999999999999999998889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 81 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 81 TALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp ESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999988899999999999999999999999999988764
No 59
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.91 E-value=2e-22 Score=131.16 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=108.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcC------CCccEEEEecCCCCCCHHHHHHHHHhcC
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSG------AKFDIVFIDKEMPVMNGIEATREIRSMG 96 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~------~~~dlvl~d~~~~~~~~~~~~~~l~~~~ 96 (145)
+++|||+||++..+..++..|+..|+ .+..+.++.++++.+... ..||+||+|+.||+++|+++++.+++..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 46899999999999999999998886 788999999999988641 3699999999999999999999999853
Q ss_pred --CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 97 --IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 97 --~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+.+|+|++++..+......+++.|+++|+.||++.++|..+++++.+
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998765
No 60
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.91 E-value=6.8e-23 Score=145.14 Aligned_cols=121 Identities=19% Similarity=0.315 Sum_probs=110.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC--cceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI--KIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~--~~~i 101 (145)
.+.+|||+||++..+..+...|+..||.+..+.++.+|++.+.....||+|++|+.||+++|+++++.+++..+ .+||
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~i 202 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAI 202 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeE
Confidence 46789999999999999999999999999999999999999876334899999999999999999999998654 6899
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 203 i~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 203 IGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp EEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHh
Confidence 9999999888899999999999999999999999999988753
No 61
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.91 E-value=2.1e-23 Score=134.39 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=108.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC-CCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+.+|||+||++..+..++..|+..||.+.++.++.++++.+..+..||+||+|+.+|+ .+|+++++.+++. +.+|+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEE
Confidence 4689999999999999999999999999999999999999875357999999999985 9999999999986 7899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99998887788899999999999999999999999988764
No 62
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.90 E-value=9.9e-23 Score=127.60 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=108.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++||++|+++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|+++++.+++ .+.+|+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~-~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQ-WSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-HCCSEEEEESEETTEEHHHHHHHHHT-TCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHh-CCCCcEEEEE
Confidence 479999999999999999999999999999999999988876 57999999999999999999999995 5688999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 999999899999999999999999999999999988764
No 63
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.90 E-value=2.6e-22 Score=128.43 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=110.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcC------CCccEEEEecCCCCCCHHHHHHHHHhcC
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSG------AKFDIVFIDKEMPVMNGIEATREIRSMG 96 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~------~~~dlvl~d~~~~~~~~~~~~~~l~~~~ 96 (145)
+++|||+|+++..+..++..|+..|+ .+..+.++.++++.+... ..||++++|+.+++.+|+++++.+++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 889999999999998751 4699999999999999999999999876
Q ss_pred --CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 97 --IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 97 --~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+.+|+|++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999988764
No 64
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.90 E-value=1.3e-22 Score=139.32 Aligned_cols=119 Identities=24% Similarity=0.340 Sum_probs=110.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|||+||++..+..++..|+.. ||.+ ..+.++.+++..+.. ..||+|++|+.||+++|+++++.+++..+.+|+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 83 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIV 83 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-HCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEE
Confidence 468999999999999999999986 4887 589999999999887 5799999999999999999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 84 ~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 84 VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp EEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999998865
No 65
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.90 E-value=2.9e-23 Score=133.67 Aligned_cols=120 Identities=25% Similarity=0.338 Sum_probs=111.4
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~~i 101 (145)
.+.+|||+|+++..+..++..|+..||.+..+.+..++++.+.. ..||+|++|+.+++.+|.++++.+++ ..+.+|+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK-GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCE
Confidence 46789999999999999999999999999999999999999987 67999999999999999999999998 6778999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 85 VMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999988877788889999999999999999999999988753
No 66
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.90 E-value=1.3e-22 Score=143.32 Aligned_cols=121 Identities=31% Similarity=0.562 Sum_probs=113.1
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
..+++||++||++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-SCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 346789999999999999999999999999999999999999987 5799999999999999999999999877789999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++|+..+......+++.|+++|+.||++.++|...+++++++
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 999999889999999999999999999999999999887753
No 67
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.90 E-value=3.2e-22 Score=129.34 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=111.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcC---------CCccEEEEecCCCCCCHHHHHHHH
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSG---------AKFDIVFIDKEMPVMNGIEATREI 92 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~---------~~~dlvl~d~~~~~~~~~~~~~~l 92 (145)
.+.+|||+|+++..+..++..|+..|+ .+..+.++.++++.+... ..||++|+|+.+++.+|+++++.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 456899999999999999999999998 899999999999998751 469999999999999999999999
Q ss_pred HhcC--CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 93 RSMG--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 93 ~~~~--~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++.. +.+|+|++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 9865 789999999999999999999999999999999999999999988764
No 68
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.90 E-value=6.3e-23 Score=127.85 Aligned_cols=114 Identities=31% Similarity=0.451 Sum_probs=104.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++|+++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+.+|.++++.+++..+.+|+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 80 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT 80 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEE
Confidence 479999999999999999999999999999999999999987 5799999999999999999999999888889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+..+.. ..+...|+++|+.||++.++|..++++++
T Consensus 81 ~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 81 AYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp SCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 876554 66788999999999999999999998865
No 69
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.90 E-value=2.2e-22 Score=131.32 Aligned_cols=119 Identities=27% Similarity=0.306 Sum_probs=111.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|||+|+++..+..++..|+. .||.+. .+.+..+++..+.. ..||+||+|+.+++.+|.++++.+++..+.+|+|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 83 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE-TTPDIVVMDLTLPGPGGIEATRHIRQWDGAARIL 83 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT-TCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEE
Confidence 46899999999999999999998 799988 89999999999987 5799999999999999999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 84 IFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred EEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998765
No 70
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.90 E-value=4.4e-23 Score=140.96 Aligned_cols=119 Identities=26% Similarity=0.315 Sum_probs=110.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.+++..+.+|+|++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 82 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP-EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFI 82 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT-TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999999999999999999999999998876 679999999999999999999999998889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 83 s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 83 TAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp ESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 9998888888999999999999999999999999887753
No 71
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.90 E-value=4.4e-23 Score=152.74 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=111.0
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
+|||+||++..+..++..|+..||.+..+.++.+|++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||++|+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~ 80 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-LFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITG 80 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-BCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeC
Confidence 69999999999999999999999999999999999999987 67999999999999999999999999888999999999
Q ss_pred CCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
..+......+++.|+++|+.||++.++|...|+++++
T Consensus 81 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 81 HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp SSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 72
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.90 E-value=5.5e-23 Score=132.74 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=102.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH--cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS--LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~--~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+.+|||+||++..+..++..|.. .||.+. .+.++.++++.+.. ..||++|+|+.+|+++|.++++.+++..+.+|+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 45799999999999999999973 588877 89999999999876 579999999999999999999999988889999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|++++..+......+++.|+++|+.||++.++|...++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 999998887778889999999999999999999999988775
No 73
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.90 E-value=2.1e-22 Score=131.68 Aligned_cols=119 Identities=22% Similarity=0.265 Sum_probs=111.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|||+|+++..+..++..|+..||.+..+.+..+++..+.. ..||+|++|+.+++.+|.++++.+++..+.+|+|++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA-DFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT-TCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 4679999999999999999999999999999999999998876 579999999999999999999999998889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|...+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 82 TGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp ECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 9999988999999999999999999999999999888754
No 74
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.90 E-value=3.1e-22 Score=128.63 Aligned_cols=118 Identities=21% Similarity=0.286 Sum_probs=105.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~ 103 (145)
.+|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||++|+|+.+|+.+|+++++.+++. .+.+|+|+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA-TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLM 82 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 579999999999999999999999999999999999999987 579999999999999999999999975 35789999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+..........|+++|+.||++.++|...+++++++
T Consensus 83 ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 83 LTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 99887666555666777899999999999999999988754
No 75
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.90 E-value=1.5e-23 Score=150.55 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=107.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~~~~~~iv 102 (145)
..+||++||++..+..++..|+..||.|. .+.++.+|++.+.. ..||+||+|+.|| +++|+++++.+|+.. ++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-~~~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-RTPGLVLADIQLADGSSGIDAVKDILGRM-DVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-CCCSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-CCCCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEE
Confidence 45799999999999999999999999999 99999999999987 6799999999999 799999999999877 99999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++|+..+ ....++..|+++|+.||++.++|..+|.+++++
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 9999753 356688999999999999999999999998864
No 76
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.90 E-value=1.8e-22 Score=127.23 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=108.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhc--CCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSM--GIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~--~~~~~i 101 (145)
+++||++|+++..+..++..|+..||.+..+.+..++++.+.. ..||++++|+.++ +.+|.++++.+++. .+.+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH-HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 4589999999999999999999999999999999999999987 5799999999999 99999999999987 678999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++ +..+......+++.|+++|+.||++.++|..+++++++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 877888888999999999999999999999999998764
No 77
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.90 E-value=1.3e-22 Score=138.56 Aligned_cols=120 Identities=30% Similarity=0.424 Sum_probs=109.9
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
.++.+|||+||++..+..+...|+..||.+. .+.++.+++..+.. ..||+||+|+.+|+++|+++++.+++..+ .|+
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~-~~~dlvi~D~~~p~~~g~~~~~~l~~~~~-~pi 88 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-HKPDLVIMDVKMPRRDGIDAASEIASKRI-API 88 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHTTC-SCE
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCChHHHHHHHHhcCC-CCE
Confidence 3456899999999999999999999999988 89999999999887 57999999999999999999999998665 499
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 89 i~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 89 VVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp EEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999998899999999999999999999999999887753
No 78
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.89 E-value=5.7e-22 Score=126.90 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=105.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC-----cc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-----KI 99 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~-----~~ 99 (145)
+.+||++||++..+..++..|+..||.+..+.++.++++.+.. .. |++++|+.+|+++|.++++.+++..+ ..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~ 84 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH-EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRP 84 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT-TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCc
Confidence 4689999999999999999999999999999999999998865 44 99999999999999999999984221 23
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++|++++..+......+++.|+++|+.||++.++|...+++++++
T Consensus 85 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 85 LLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 677899999998899999999999999999999999999998764
No 79
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.89 E-value=3.4e-23 Score=133.25 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=100.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~iv 102 (145)
+.+|||+|+++..+..++..|+.. |.+..+.++.++++.+.. ..||+||+|+.+++.+|+++++.+++.. +.+|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH-HCCSEEEEETTC------CHHHHHHTSTTCTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEE
Confidence 468999999999999999999888 999999999999999987 5799999999999999999999999876 789999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 999998888888899999999999999999999999998864
No 80
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.89 E-value=3.6e-22 Score=138.37 Aligned_cols=119 Identities=24% Similarity=0.421 Sum_probs=110.6
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
|+++|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||++++|+.+|+++|+++++.+++. +.+|+|+
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~ 80 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR-AGADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIM 80 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEE
Confidence 35689999999999999999999999999999999999999877 579999999999999999999999985 6899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 99998888899999999999999999999999999998865
No 81
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.89 E-value=5.1e-22 Score=129.60 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=100.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CC-eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GF-KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|||+|+++..+..++..|+.. || .+..+.+..+++..+.....||+||+|+.+++.+|.++++.+++..+.+|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 468999999999999999999987 88 5779999999999987624699999999999999999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 999998888899999999999999999999999999998865
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.89 E-value=1.1e-21 Score=126.05 Aligned_cols=115 Identities=21% Similarity=0.301 Sum_probs=104.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
+||++||++..+..++..|+.. |.+..+.++.+++..+.. ..||++++|+.+|+++|.++++.+++..+.+|+|++++
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE-EWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG 80 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH-SCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeC
Confidence 6999999999999999999875 999999999999999887 57999999999999999999999998888899999999
Q ss_pred CCCHHHHHHHHHh-CCceeecCCCCHHHHHHHHHHHHh
Q 048318 107 LNSEAEREAFMQA-GLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 107 ~~~~~~~~~~~~~-g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
..+......++.. |+++|+.||++.++|..+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 81 YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 8887777778775 599999999999999999988765
No 83
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.89 E-value=1.6e-22 Score=140.23 Aligned_cols=119 Identities=26% Similarity=0.408 Sum_probs=111.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|||+||++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|+++++.+++..+.+|+|++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-NRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999999999999999999999999999887 579999999999999999999999988889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 86 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp ECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9998888888899999999999999999999999988764
No 84
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.89 E-value=1.3e-22 Score=129.40 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=107.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|||+|+++..+..++..|+..++.+..+.+.++++..+.. . ||+||+|+.+++.+|+++++.+++..+.+|+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN-K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILI 80 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC-T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc-C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEE
Confidence 4689999999999999999999888899999999999988766 5 9999999999999999999999998889999999
Q ss_pred eCCCCH-----HHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSE-----AEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~-----~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+. .....+...|+++|+.||++.++|...++++.++
T Consensus 81 s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 81 SGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp ESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred EeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 988875 5666788999999999999999999999998765
No 85
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.89 E-value=2.7e-22 Score=149.44 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=107.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+.+|||+||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.+++..+++|+|+
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-EQPDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-SCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999999999999999999999999987 67999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCC-CHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPL-SVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~-~~~~L~~~i~~~~~ 143 (145)
+|+..+......+++.|+++|+.||+ +.++|...+.++++
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~ 123 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 123 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999 68888888877664
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.88 E-value=9e-22 Score=146.61 Aligned_cols=117 Identities=27% Similarity=0.388 Sum_probs=110.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.+++..+++|+|++|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT 79 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-KHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVIT 79 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Confidence 369999999999999999999999999999999999999987 6799999999999999999999999988899999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+..+......+++.|+++|+.||++.++|...++++++
T Consensus 80 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 80 GHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp ETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
No 87
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.88 E-value=2.8e-21 Score=123.77 Aligned_cols=117 Identities=16% Similarity=0.247 Sum_probs=108.0
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC-cce
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-KIK 100 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~-~~~ 100 (145)
...+.+|||+|+++..+..++..|+..||.+..+.+..+++..+.. ..||++| +++.+|+++++.+++. + .+|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvi----~~~~~g~~~~~~l~~~-~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-RNYDLVM----VSDKNALSFVSRIKEK-HSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-SCCSEEE----ECSTTHHHHHHHHHHH-STTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-CCCCEEE----EcCccHHHHHHHHHhc-CCCcc
Confidence 3456789999999999999999999999999999999999999987 6799999 7889999999999988 7 899
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCC-CHHHHHHHHHHHHhc
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPL-SVDKILPLMEDLMKN 144 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~-~~~~L~~~i~~~~~~ 144 (145)
+|++++..+......+++.|+++|+.||+ +.++|...+++++++
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999988764
No 88
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.6e-21 Score=124.56 Aligned_cols=119 Identities=23% Similarity=0.344 Sum_probs=108.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHc-----CCCccEEEEecCCCCCCHHHHHHHHHhcC-
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRS-----GAKFDIVFIDKEMPVMNGIEATREIRSMG- 96 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~-----~~~~dlvl~d~~~~~~~~~~~~~~l~~~~- 96 (145)
+++|||+|+++..+..++..|+..|+ .+..+.+..+++..+.. ...||+||+|+.+++.+|+++++.+++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 46799999999999999999999998 89999999999999874 14699999999999999999999999865
Q ss_pred -CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 97 -IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 97 -~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+.+|+|++++..+......+++.|+++|+.||++.++|..++.....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999766543
No 89
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.88 E-value=2.5e-21 Score=122.97 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=106.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCC-CccEEEEecCCCC-CCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGA-KFDIVFIDKEMPV-MNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~-~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|||+|+++..+..++..|+..||.+..+.++.++++.+.. . .||++|+|+.+++ .+|+++++.+++..+.+|+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS-GAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-TCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc-CCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999987 5 7999999999997 99999999999988899999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++++..+......++..| +|+.||++.++|..++++++++
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 999988777766666655 7999999999999999998865
No 90
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.88 E-value=5.1e-22 Score=138.59 Aligned_cols=119 Identities=26% Similarity=0.427 Sum_probs=110.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++++|||+||++..+..++..|+..||.+..+.++.++++.+.. ..||+||+|+.+|+++|+++++.+++.. .+|+|+
T Consensus 4 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~-~~~ii~ 81 (238)
T 2gwr_A 4 MRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-LRPDLVLLDLMLPGMNGIDVCRVLRADS-GVPIVM 81 (238)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHTTC-CCCEEE
T ss_pred ccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEE
Confidence 34689999999999999999999999999999999999999877 5799999999999999999999999864 899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 82 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 82 LTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 99998888888999999999999999999999999988765
No 91
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.88 E-value=1.6e-21 Score=134.30 Aligned_cols=116 Identities=25% Similarity=0.302 Sum_probs=108.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+++|||+||++..+..++..|+..| .+..+.++.++++.+ ..||++++|+.+|+++|+++++.+++..+.+|+|++
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 4689999999999999999999888 888999999999876 359999999999999999999999998889999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999998865
No 92
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.88 E-value=2.2e-21 Score=128.29 Aligned_cols=120 Identities=31% Similarity=0.379 Sum_probs=103.9
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcC-CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLG-FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g-~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
..+++|||+||++..+..++..|+..| +.+ ..+.++.++++.+.. ..||+||+|+.+++.+|+++++.+++..+ +|
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~~l~~~lr~~~~-~~ 100 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE-LKPDVITMDIEMPNLNGIEALKLIMKKAP-TR 100 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHHSC-CE
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-ce
Confidence 346789999999999999999999874 444 489999999999987 57999999999999999999999998777 89
Q ss_pred EEEEeCCCCHH--HHHHHHHhCCceeecCCCC---------HHHHHHHHHHHHhc
Q 048318 101 IVGVTSLNSEA--EREAFMQAGLDLCHTKPLS---------VDKILPLMEDLMKN 144 (145)
Q Consensus 101 iv~l~~~~~~~--~~~~~~~~g~~~~l~kP~~---------~~~L~~~i~~~~~~ 144 (145)
+|++++..+.. ....+++.|+++|+.||++ .+++..++++++.+
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 99998866543 6778999999999999999 68888888887764
No 93
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2e-22 Score=139.72 Aligned_cols=118 Identities=22% Similarity=0.190 Sum_probs=110.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcC-CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLG-FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g-~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
++|||+||++..+..++..|+..| |.+. .+.++.++++.+.. ..||+||+|+.+|+++|+++++.+++..+.+|+|+
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 80 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA-ARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLI 80 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH-HCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 579999999999999999999876 8855 79999999999887 57999999999999999999999999888999999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988764
No 94
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.88 E-value=1.3e-21 Score=121.55 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=105.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--CcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--IKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~~iv~ 103 (145)
.+||++++++..+..+...|+..||.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++.. +.+|+|+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL-LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 479999999999999999999999999999999999999987 5799999999999999999999999865 7899999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+.. .++..|+++|+.||++.++|...+++++++
T Consensus 81 ~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 81 FLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp EESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred EeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 99887665 789999999999999999999999987765
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.88 E-value=7.1e-21 Score=122.61 Aligned_cols=118 Identities=16% Similarity=0.306 Sum_probs=103.9
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
.+++|||+|+++..+..++..|+.. |+.+. .+.++.++++.+.. ..||+||+|+.+++.+|.++++.+++..+..||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-NKVDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-CCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 3578999999999999999999986 88854 89999999999987 579999999999999999999999987777888
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|++++..+ ....+++.|+++|+.||++.++|...+++++++
T Consensus 87 i~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 87 VFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 88888743 467789999999999999999999999988753
No 96
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.87 E-value=1.1e-21 Score=126.25 Aligned_cols=117 Identities=27% Similarity=0.479 Sum_probs=101.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-----CCc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-----GIK 98 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-----~~~ 98 (145)
++.+|||+||++..+..++..|+..|+.+..+.++.++++.+.. ..||++|+|+.+|+.+|.++++.+++. .+.
T Consensus 9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 34689999999999999999999889999999999999999987 579999999999999999999999863 467
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+|++++++........ ..|+++|+.||++.++|..++++++++
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 8899888765443322 789999999999999999999988764
No 97
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.87 E-value=3.9e-21 Score=145.46 Aligned_cols=117 Identities=24% Similarity=0.302 Sum_probs=109.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVG 103 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~ 103 (145)
.+|||+||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.+++. .+.+|||+
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~-~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~ 80 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVL 80 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEE
Confidence 479999999999999999999999999999999999999887 579999999999999999999999974 35789999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 98
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.87 E-value=2.2e-21 Score=125.47 Aligned_cols=119 Identities=29% Similarity=0.420 Sum_probs=100.6
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCC-CccEEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGA-KFDIVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~-~~dlvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
...+.+||++||++..+..++..|+.. ||.+. .+.++.++++.+.. . .||+||+|+.|++++|+++++.+++..+
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~~dlvilD~~l~~~~g~~~~~~lr~~~~- 87 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA-QPNVDLILLDIEMPVMDGMEFLRHAKLKTR- 87 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-CTTCCEEEECTTSCCCTTCHHHHHHHHHCC-
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-
Confidence 345678999999999999999999987 88865 89999999999987 5 7999999999999999999999998765
Q ss_pred ceEEEEeC--CCCHHHHHHHHHhCCceeecCCCC----------HHHHHHHHHHHH
Q 048318 99 IKIVGVTS--LNSEAEREAFMQAGLDLCHTKPLS----------VDKILPLMEDLM 142 (145)
Q Consensus 99 ~~iv~l~~--~~~~~~~~~~~~~g~~~~l~kP~~----------~~~L~~~i~~~~ 142 (145)
.|+++++. ..+......+++.|+++|+.||++ ..++.+.++++.
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~l~~~i~~~~ 143 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGELARTMRTLM 143 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHHHHHHHHHH
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888887 555666788999999999999999 455666665554
No 99
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.87 E-value=3.1e-22 Score=138.62 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=105.6
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHH-HHcCCCccEEEEecCCCCCCHHHHHHHHHh-cCCcc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDL-FRSGAKFDIVFIDKEMPVMNGIEATREIRS-MGIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~-~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~~ 99 (145)
.+++|||+||++..+..++..|+. .||.+. .+.+..+++.. +.. ..||+||+|+.||+++|+++++.+++ ..+++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~-~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 84 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES-RSIQMLVIDYSRISDDVLTDYSSFKHISCPDA 84 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG-GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTC
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc-cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCC
Confidence 357899999999999999999985 588886 44566666553 454 57999999999999999999999998 78899
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+|++|+..+......++..|+++|+.||++.++|..++++++++
T Consensus 85 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 85 KEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred cEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 999999998888888999999999999999999999999998865
No 100
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.85 E-value=3.7e-23 Score=129.95 Aligned_cols=118 Identities=25% Similarity=0.345 Sum_probs=108.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+||++|+++..+..++..|+..||.+..+.++.+++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+|+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s 82 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS-CCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEe
Confidence 468999999999999999999899999999999999998876 5799999999999999999999999888889999999
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|...+++++++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 83 AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp CSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 988877788889999999999999999999999998765
No 101
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.85 E-value=2.9e-20 Score=128.23 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=106.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC-cceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-KIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~-~~~iv~l 104 (145)
++|||+||++..+..++..|+..||.+..+.++.+++..+.. ..||+++ +|+++|+++++.+++. + .+|+|++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvi----lp~~~g~~~~~~lr~~-~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-RNYDLVM----VSDKNALSFVSRIKEK-HSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT-SCCSEEE----ECCTTHHHHHHHHHHH-CTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc-CCCCEEE----eCCCCHHHHHHHHHhC-CCCCcEEEE
Confidence 368999999999999999999999999999999999999987 6799999 8999999999999988 6 8999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCC-CHHHHHHHHHHHHhc
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPL-SVDKILPLMEDLMKN 144 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~-~~~~L~~~i~~~~~~ 144 (145)
++..+......+++.|+++|+.||+ +.++|..++++++++
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 999999999998765
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.85 E-value=1.1e-20 Score=141.17 Aligned_cols=120 Identities=24% Similarity=0.289 Sum_probs=106.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH-cCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS-LGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+++|||+||++..+..++..|+. .|+.+..+.++.+|++.+.....||+||+|+.||+++|+++++.+++..+..+||+
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~ 82 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVIL 82 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 46899999999999999999998 57889999999999999875226999999999999999999999998888888887
Q ss_pred EeCCCCH-----HHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 104 VTSLNSE-----AEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 104 l~~~~~~-----~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+++..+. .....++..|+++|+.||++.++|...+.+++++
T Consensus 83 ~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~ 128 (400)
T 3sy8_A 83 SSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNAR 128 (400)
T ss_dssp SCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred EcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHh
Confidence 7777766 5677888999999999999999999999988753
No 103
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.85 E-value=6.2e-21 Score=122.29 Aligned_cols=119 Identities=12% Similarity=0.103 Sum_probs=102.0
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
.+.+.+||++|+++..+..++..|+..||.+..+.++.++++.+.....||++++|+.+++.+|.++++.+++..+.+|+
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~i 91 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSV 91 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEE
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCE
Confidence 34467899999999999999999999999999999999999988651369999999999999999999999998788999
Q ss_pred EEEe-CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 102 VGVT-SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 102 v~l~-~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|+++ +..+... ..++ +++|+.||++.++|...+++++++
T Consensus 92 i~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 92 LILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 9999 7665544 4444 999999999999999999988754
No 104
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.85 E-value=1.4e-20 Score=138.13 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=106.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHH-HcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALK-SLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~-~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~i 101 (145)
..+|||+||++..+..++..|. ..||.+..+.++.+|++.+.. ..||+||+|+.||+++|+++++.+++. .+.+|+
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~i 96 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ-IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPI 96 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH-HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcE
Confidence 4569999999999999999996 468999999999999999987 579999999999999999999999975 457999
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
|++|+..+......+++.|+++|+.||++.++|..+++...
T Consensus 97 i~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 97 IVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987653
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.84 E-value=1.8e-20 Score=127.00 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=101.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
+.+|||+||++..+..+...|+..||.+..+.++.+++ . ..||+||+|+.||+++|. +++.++...+.+|+|++
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~-~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D-VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVAL 85 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S-SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C-CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEE
Confidence 46899999999999999999999999999887777655 3 469999999999999998 88888876578999999
Q ss_pred eCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 105 TSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|+..+......+++.|+++|+.||++.++|...++.+++
T Consensus 86 t~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 86 VEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987764
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.82 E-value=5.3e-19 Score=130.06 Aligned_cols=118 Identities=24% Similarity=0.307 Sum_probs=104.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|||+||++..+..++..|+.. ||. +..+.++.++++.+.. ..||++++|+.||+++|+++++.+++..+ +|+|
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~-~~pDlVllDi~mp~~dGlell~~l~~~~p-~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-FNPDVLTLDVEMPRMDGLDFLEKLMRLRP-MPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEEECCCSSSCHHHHHHHHHHSSC-CCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc-cCCCEEEEECCCCCCCHHHHHHHHHhcCC-CcEE
Confidence 468999999999999999999986 898 4599999999999987 57999999999999999999999998776 9999
Q ss_pred EEeCCCCH--HHHHHHHHhCCceeecCCCCH---------HHHHHHHHHHHhc
Q 048318 103 GVTSLNSE--AEREAFMQAGLDLCHTKPLSV---------DKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~--~~~~~~~~~g~~~~l~kP~~~---------~~L~~~i~~~~~~ 144 (145)
++++..+. .....+++.|+++|+.||++. ++|...++.+.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99988765 447889999999999999984 8888888877653
No 107
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.81 E-value=8.1e-20 Score=145.78 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=108.6
Q ss_pred ceEEEEeCcH-HH-------HHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCC----CCHHHHHHHHH
Q 048318 26 LFALVVDDDC-FI-------RTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPV----MNGIEATREIR 93 (145)
Q Consensus 26 ~~iLii~~~~-~~-------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~----~~~~~~~~~l~ 93 (145)
++||||||+. .. +..++..|+..||+|..+.++++++..+.....||+|++|+.||+ ++|.++++.+|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR 80 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHH
Confidence 3799999999 88 999999999999999999999999999987334999999999999 99999999999
Q ss_pred hcCCcceEEEEeCCCC-HHHHHHHHHhCCceeecCCCCHHH-HHHHHHHHHhc
Q 048318 94 SMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSVDK-ILPLMEDLMKN 144 (145)
Q Consensus 94 ~~~~~~~iv~l~~~~~-~~~~~~~~~~g~~~~l~kP~~~~~-L~~~i~~~~~~ 144 (145)
+..+.+||+++|+..+ .......+..|+|+|+.||++..+ |.++|++++++
T Consensus 81 ~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 81 ERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp HHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 9888999999999776 667778899999999999999999 99999988865
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.76 E-value=2.7e-18 Score=121.46 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=86.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH-cCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS-LGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+.+|||+||++..+..+...|.. .||.+..+ ++.+++..+.. ..||+|++|+.||+++|+++++.+++. .+|+|+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~-~~~dlvllD~~mP~~~G~~~~~~lr~~--~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG-DEYVVALVDLTLPDAPSGEAVKVLLER--GLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT-TTEEEEEEESCBTTBTTSHHHHHHHHT--TCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc-CCCcEEEEeCCCCCCCHHHHHHHHHhC--CCCEEE
Confidence 35799999999999999999976 47777654 44455554444 579999999999999999999999974 589999
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSV 131 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~ 131 (145)
+|+..+......+++.||++|+.||...
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999754
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.38 E-value=4.1e-13 Score=92.76 Aligned_cols=93 Identities=28% Similarity=0.402 Sum_probs=78.2
Q ss_pred CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCC-
Q 048318 50 FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKP- 128 (145)
Q Consensus 50 ~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP- 128 (145)
+.|..+.++.++++.+.. ..||++++|+.||+++|+++++.+++..+..++++++..........+++.|+++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~ 84 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTA 84 (237)
T ss_dssp EEEECCCSSSTTHHHHHH-HCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHH
T ss_pred EEEEECCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCc
Confidence 455668889999998877 579999999999999999999999987666666666666668888999999999999998
Q ss_pred -CCHHHHHHHHHHHHh
Q 048318 129 -LSVDKILPLMEDLMK 143 (145)
Q Consensus 129 -~~~~~L~~~i~~~~~ 143 (145)
++..++...+.+.+.
T Consensus 85 ~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 85 AVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHCTHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHHhC
Confidence 777888888877654
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.22 E-value=8.4e-10 Score=83.33 Aligned_cols=116 Identities=12% Similarity=0.189 Sum_probs=96.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv 102 (145)
..++++++++......+...|.. .+.+....+..++.. ... ..||++++|..||.++|+++++.++.. ....|++
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~-~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii 228 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG-GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVL 228 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH-SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc-CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEE
Confidence 45799999999888888777754 456677778887753 334 469999999999999999999999863 3468999
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++..........++..|+++|+.||++..++..++..+.+
T Consensus 229 ~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 229 AMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 99999999888999999999999999999999888876553
No 111
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=98.43 E-value=3.4e-06 Score=50.23 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=83.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh--cCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS--MGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~--~~~~~~iv 102 (145)
+..||++..|....-.+++.+....|.++......+ ...-|+|+|++.+-..+ +.+ ..+..-+|
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~-------e~~AdlIfCEYlLLPe~-------ifS~k~~~~~dli 77 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ-------ELSADLVVCEYSLLPRE-------IRSPKSLEGSFVL 77 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC-------CTTEEEEEEEGGGSCTT-------CCCCTTCCSCEEE
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccCC-------cccceeEEEeeecChHH-------hcCCCCCCcccEE
Confidence 457899999999999999999878899998765442 24579999998764322 111 23355677
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
++-+.-+++...+.++.|++ |+.+|+++.-+-+.|+.-+++
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 88888899999999999999 999999999999999888764
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=98.40 E-value=3.9e-07 Score=72.50 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHH
Q 048318 37 IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~ 116 (145)
....|...|+..||+|..+.+.++++..+.++...++|++||.++ +.++++.++++++.+||+++++..+.......
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~ 94 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLN 94 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGT
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchh
Confidence 445667888899999999999999999998755589999999874 68899999999999999999887543222111
Q ss_pred HHhCCceeecCCC-CHHHHHHHHHHHHh
Q 048318 117 MQAGLDLCHTKPL-SVDKILPLMEDLMK 143 (145)
Q Consensus 117 ~~~g~~~~l~kP~-~~~~L~~~i~~~~~ 143 (145)
...++++|+.+.. +.+.+..+|.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (715)
T 3n75_A 95 DLRLQISFFEYALGAAEDIANKIKQTTD 122 (715)
T ss_dssp TSCCEEEEECCCTTCHHHHHHHHHHHHH
T ss_pred hhhccCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2357888888764 56666677766554
No 113
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=98.05 E-value=0.00028 Score=46.14 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~ 95 (145)
+.+|++. |.|..-...+..+|+..||+|.. ..+.++.++.+.+ ..||+|.+...+.. . ...++++.+++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 4467777 77778888999999999999984 3477888888887 67999999876543 1 234677778776
Q ss_pred CC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 96 GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 96 ~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+ +++|+ +++.........+...|+|.++..--+..+....+..+++
T Consensus 97 g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 97 GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence 53 67765 5555555555567789999866544455666666665553
No 114
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.87 E-value=3.6e-05 Score=53.72 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=67.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
.+.+||++++++..+..+...|+..|+.+..+.+. .. ..+|++++|+.++...+. ..++.
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~-------~~-~~~~~ii~d~~~~~~~~~------------~~~i~ 69 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ-------EP-TPEDVLITDEVVSKKWQG------------RAVVT 69 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC-------CC-CTTCEEEEESSCSCCCCS------------SEEEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC-------CC-CcCcEEEEcCCCcccccc------------ceEEE
Confidence 46789999999999999999999999999877641 22 469999999998865331 12444
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
++...... ....+...++.+|+...++...+.+++
T Consensus 70 ~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 70 FCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp ECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred EecccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 44432110 012344577888998888888887665
No 115
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=97.54 E-value=0.0048 Score=39.05 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=76.3
Q ss_pred eCcHHHHHHHHHHHHHcCCeEE---EEcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCC-cceEEEEe
Q 048318 32 DDDCFIRTIHSMALKSLGFKVE---VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGI-KIKIVGVT 105 (145)
Q Consensus 32 ~~~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~-~~~iv~l~ 105 (145)
|-|..-...+..+|+..||+|. ...+.++.++.+.+ ..+|+|.+...+... ...++++.+++... ++++++=.
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4555666778888999999988 45688888888887 579999998876432 13356777877554 56765433
Q ss_pred CC----CCHH-HHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 106 SL----NSEA-EREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 106 ~~----~~~~-~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.. .+.. ....+.+.|++.|+..-.+..+....+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 93 NIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp SCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred CCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 32 1222 2455789999999866677788887776654
No 116
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.95 E-value=0.014 Score=39.46 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=60.3
Q ss_pred CHHHHHHHHHcCCCccEEEEec-CCCCCCH--HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee------cC
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDK-EMPVMNG--IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH------TK 127 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~-~~~~~~~--~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l------~k 127 (145)
+..+.++.+.....+++++.+. ..+.++| .+.+++++... +.|+|++++....+...++++.|+++++ .+
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666555423456888886 4444555 55666766543 7899999999999999999999999984 78
Q ss_pred CCCHHHHHHHHH
Q 048318 128 PLSVDKILPLME 139 (145)
Q Consensus 128 P~~~~~L~~~i~ 139 (145)
|+++.++...+.
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999887664
No 117
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=96.77 E-value=0.033 Score=37.94 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=69.3
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEE--ecCCCC-CC-HHHHHHHHH
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFI--DKEMPV-MN-GIEATREIR 93 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~--d~~~~~-~~-~~~~~~~l~ 93 (145)
+.+|++. |-|..-...+..+|+..||+|... ...++.++.+.+ ..||+|.+ ...+.. .. -.++++.++
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 3467776 566677788888899999998743 367778888887 67999999 776542 22 456778888
Q ss_pred hcCC--cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 94 SMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 94 ~~~~--~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+... ++|+++=+..-+.+. +...|+|.|-
T Consensus 171 ~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~ 201 (215)
T 3ezx_A 171 EEKLRDSVKCMFGGAPVSDKW---IEEIGADATA 201 (215)
T ss_dssp HTTCGGGSEEEEESSSCCHHH---HHHHTCCBCC
T ss_pred HcCCCCCCEEEEECCCCCHHH---HHHhCCeEEE
Confidence 8765 678776555556543 4567999984
No 118
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=96.73 E-value=0.062 Score=37.56 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=75.5
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCC-CC-HHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPV-MN-GIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~-~~~~~~~l~~~ 95 (145)
..+|++. |-|..-...+..+|+..||+|.. -...++.++.+.. ..||+|.+...+.. .. ..++++.+++.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 3467777 56667778888889999999863 3467777787776 57999999987653 33 34678888887
Q ss_pred CCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 96 GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.+.+|+++=+...+... +...|+|.|-. +..+....+.+++
T Consensus 202 ~~~~~v~vGG~~~~~~~---~~~igad~~~~---da~~av~~~~~l~ 242 (258)
T 2i2x_B 202 GIKIPFACGGGAVNQDF---VSQFALGVYGE---EAADAPKIADAII 242 (258)
T ss_dssp TCCCCEEEESTTCCHHH---HHTSTTEEECS---STTHHHHHHHHHH
T ss_pred CCCCcEEEECccCCHHH---HHHcCCeEEEC---CHHHHHHHHHHHH
Confidence 77788776554455443 23678888853 3344445554444
No 119
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=96.67 E-value=0.027 Score=45.01 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=80.5
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~ 95 (145)
+.+|++. |.|..-...+..+|+..||+|... .+.++.++...+ ..+|+|.+...+.. + ...++++.+++.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKL 674 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH-cCCCEEEEeeecHhHHHHHHHHHHHHHhc
Confidence 4567776 556666677888899999999853 367888888877 67999988875542 2 345677888876
Q ss_pred CC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 96 GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 96 ~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.. +++| ++++-.-......+.+.|+|.|+..-.+..++...+...++
T Consensus 675 G~~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 675 GRPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp TCTTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 65 5444 45542222234556889999998755677777777765553
No 120
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=96.66 E-value=0.036 Score=44.48 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=79.6
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~ 95 (145)
+.+|++. |.|..-...+..+|+..||+|... .+.++.++...+ ..+|+|.+...+.. + ...++++.+++.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~~Lr~~ 682 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD-ADVHAVGVSTLAAGHKTLVPELIKELNSL 682 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH-cCCCEEEEeeecHHHHHHHHHHHHHHHhc
Confidence 4567776 455566677888899999999853 467888888877 57999988865532 1 245677888876
Q ss_pred CC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 96 GI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 96 ~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.. ++++ ++++-........+...|+|.|+..-.+..+....+...+
T Consensus 683 G~~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 683 GRPDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp TCTTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 65 5544 4554222223445688999999875567777777776655
No 121
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=96.63 E-value=0.051 Score=37.37 Aligned_cols=90 Identities=8% Similarity=0.044 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecC------CCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 34 DCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKE------MPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 34 ~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~------~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
++.....+...+++.|..+. .+.+.+++...... ..|.|.+... .....++++++.+++. ++|+|.-++
T Consensus 114 ~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~--Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~--~ipvIA~GG 189 (229)
T 3q58_A 114 RPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK--GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA--GCRVIAEGR 189 (229)
T ss_dssp CSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT--TCCEEEESS
T ss_pred ChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC--CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc--CCCEEEECC
Confidence 34444555555666687765 77888888877654 5898865322 1234578889998875 789998888
Q ss_pred CCCHHHHHHHHHhCCceeecC
Q 048318 107 LNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~k 127 (145)
-.+.+....++..|+++++.-
T Consensus 190 I~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 190 YNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEc
Confidence 888999999999999999754
No 122
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=96.47 E-value=0.1 Score=35.14 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=73.7
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~ 95 (145)
+.+|++. |-|..-...+..+|+..||+|... ...++.++.+.+ ..||+|.+...+.. . .-.++++.+++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHhc
Confidence 3367777 667777788899999999998853 356777777776 57999999886653 2 234677788875
Q ss_pred C--CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 96 G--IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 96 ~--~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
. +++|+++=....+... +...|+|.|. -+..+.....+++
T Consensus 167 ~~~~~~~v~vGG~~~~~~~---~~~~gad~~~---~da~~av~~~~~l 208 (210)
T 1y80_A 167 GLRDRVKVIVGGAPLSQDF---ADEIGADGYA---PDAASATELCRQL 208 (210)
T ss_dssp TCGGGCEEEEESTTCCHHH---HHHHTCSEEC---SSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCHHH---HHHcCCeEEE---CCHHHHHHHHHHH
Confidence 4 3578776555555443 3567999884 3444444444443
No 123
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=96.36 E-value=0.095 Score=36.05 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecC-C-----CCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 35 CFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKE-M-----PVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~-~-----~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
+.....+...+++.|..+. .+.+.+++.+.... ..|.|.+... . ....++++++++++. ++|+|.-++-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~--Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~--~ipvIA~GGI 190 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL--GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRY 190 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT--TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--TCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC--CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--CCcEEEECCC
Confidence 4444555555666687765 67788888777654 5898865322 1 234578889998875 7899888877
Q ss_pred CCHHHHHHHHHhCCceeecC
Q 048318 108 NSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~k 127 (145)
.+.+....++..|+++++.-
T Consensus 191 ~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 191 NSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 88999999999999999743
No 124
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=96.30 E-value=0.094 Score=36.81 Aligned_cols=114 Identities=6% Similarity=0.029 Sum_probs=74.7
Q ss_pred CceEEEE----eCcHHHHHHHHHH--------HHHc-CCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCCC----C
Q 048318 25 RLFALVV----DDDCFIRTIHSMA--------LKSL-GFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPVM----N 84 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~--------L~~~-g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~~----~ 84 (145)
+.+|++. |-|..=...+..+ |+.. ||+|.. ....++.++.+.+ ..+|+|.+...+... .
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e-~~~d~VglS~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE-LEADVLLVSQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH-TTCSEEEEECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEEeecCCccchHH
Confidence 3456555 4455555556666 8899 999874 3478888888887 679999999877642 1
Q ss_pred -HHHHHHHHHhcCC--cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 85 -GIEATREIRSMGI--KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 85 -~~~~~~~l~~~~~--~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
-.++++.+++... .+++++=....+.. .+.+.|+|.|+.--....++...+...+
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHH
Confidence 2346777776543 36665433333433 3667899999765566666666665443
No 125
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.23 E-value=0.095 Score=38.43 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=73.8
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHc---CCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSL---GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~---g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
..+++++.|+|.|....+.|.+++... .|.+..+++.+.+.+...+ ..+|++++|-.+... . ......
T Consensus 18 ~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~-~~~dilli~e~~~~~-~-------~~~~~~ 88 (373)
T 3fkq_A 18 QGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE-YRIDVLIAEEDFNID-K-------SEFKRN 88 (373)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH-HTCSEEEEETTCCCC-G-------GGGCSS
T ss_pred cCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc-CCCCEEEEcchhhhh-h-------hhhccc
Confidence 346789999999999999999999753 5889999999999999887 579999999877542 1 112223
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.++++++.....+ ...-...+.|--+.+++...+...+
T Consensus 89 ~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 89 CGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp CEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 4555565543221 0112235678777888887776554
No 126
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=95.75 E-value=0.31 Score=34.14 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHH
Q 048318 40 IHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMGIKIKIVGVTSLNSEAE 112 (145)
Q Consensus 40 ~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~ 112 (145)
...+.|.+.||.+. +..+...+.+... ..+++|+ .+..+ +...+++++.+++. ..+|+|+=+.-.+.+.
T Consensus 126 ~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~--~G~~aVm-Plg~pIGsG~Gi~~~~lI~~I~e~-~~vPVI~eGGI~TPsD 201 (265)
T 1wv2_A 126 KAAEQLVKDGFDVMVYTSDDPIIARQLAE--IGCIAVM-PLAGLIGSGLGICNPYNLRIILEE-AKVPVLVDAGVGTASD 201 (265)
T ss_dssp HHHHHHHTTTCEEEEEECSCHHHHHHHHH--SCCSEEE-ECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHH--hCCCEEE-eCCccCCCCCCcCCHHHHHHHHhc-CCCCEEEeCCCCCHHH
Confidence 33445556799977 5556666665554 4588884 33322 12357889999884 5789887667789999
Q ss_pred HHHHHHhCCceeec-----CCCCHHHHHHHHHHHH
Q 048318 113 REAFMQAGLDLCHT-----KPLSVDKILPLMEDLM 142 (145)
Q Consensus 113 ~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~ 142 (145)
...+++.|++++++ |.-++..+...+...+
T Consensus 202 Aa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 202 AAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 99999999999864 4444666666655443
No 127
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=95.55 E-value=0.18 Score=35.35 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=64.5
Q ss_pred HHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCCC-----CCHHHHHHHHHhcCCc-ceEEEEeCCCCHHHHHH
Q 048318 44 ALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMPV-----MNGIEATREIRSMGIK-IKIVGVTSLNSEAEREA 115 (145)
Q Consensus 44 ~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~~-----~~~~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~ 115 (145)
.|.+.||.+. +..|...+-+... ..+++| +.+.-+- ....++++.+++...+ +|+|+=+.-.+.+....
T Consensus 119 ~L~k~Gf~Vlpy~~~D~~~ak~l~~--~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~ 195 (268)
T 2htm_A 119 RLIEEDFLVLPYMGPDLVLAKRLAA--LGTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAE 195 (268)
T ss_dssp HHHHTTCEECCEECSCHHHHHHHHH--HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHH
T ss_pred HHHHCCCEEeeccCCCHHHHHHHHh--cCCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHH
Confidence 3446799977 4456655544443 357877 5544321 2236678888884556 89987777789999999
Q ss_pred HHHhCCceee-----cCCCCHHHHHHHHHHHH
Q 048318 116 FMQAGLDLCH-----TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 116 ~~~~g~~~~l-----~kP~~~~~L~~~i~~~~ 142 (145)
+++.|+++.+ .|.-++..+...+...+
T Consensus 196 AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 196 VMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999999986 45455666666665544
No 128
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=95.31 E-value=0.33 Score=33.61 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=62.8
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcC-CcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~-~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+.+++.+.... .+|.|.+.--.+. .-|++.++.+++.. ..+|++++++- +.+.+..++..|++.+.
T Consensus 141 S~ht~~Ea~~A~~~--GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gva 217 (243)
T 3o63_A 141 STHDPDQVAAAAAG--DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIV 217 (243)
T ss_dssp EECSHHHHHHHHHS--SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEE
T ss_pred eCCCHHHHHHHhhC--CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEE
Confidence 67888888776654 5899999764443 23678888887653 47899988776 56668889999999985
Q ss_pred -----cCCCCHHHHHHHHHHHHh
Q 048318 126 -----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 126 -----~kP~~~~~L~~~i~~~~~ 143 (145)
.+.-++.+..+.+...++
T Consensus 218 v~sai~~a~dp~~a~~~l~~~~~ 240 (243)
T 3o63_A 218 VVRAITSADDPRAAAEQLRSALT 240 (243)
T ss_dssp ESHHHHTCSSHHHHHHHHHHHHH
T ss_pred EeHHHhCCCCHHHHHHHHHHHHH
Confidence 355667777777766654
No 129
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=95.25 E-value=0.19 Score=39.74 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=75.2
Q ss_pred CCceEEEEe---CcHHHHHH-H----HHHHHHcCCeEEE---EcCHHHHHHHHHcCCCccEEEEecCCCC----CCH-HH
Q 048318 24 LRLFALVVD---DDCFIRTI-H----SMALKSLGFKVEV---AENGKEAVDLFRSGAKFDIVFIDKEMPV----MNG-IE 87 (145)
Q Consensus 24 ~~~~iLii~---~~~~~~~~-l----~~~L~~~g~~v~~---~~~~~~al~~~~~~~~~dlvl~d~~~~~----~~~-~~ 87 (145)
.+.+|++.- |-...-.. + ..+|+..||+|.. ..+.++.++.+.+ ..+|+|.+..-+.. +.. .+
T Consensus 601 ~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E-edADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE-LKADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp SCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHH
T ss_pred cCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccCchhhHHHHHH
Confidence 355777772 33333332 2 4578899999873 3478888988887 67999999987765 222 35
Q ss_pred HHHHHHhcCCc--ceEEEEeCC-CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 88 ATREIRSMGIK--IKIVGVTSL-NSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 88 ~~~~l~~~~~~--~~iv~l~~~-~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+++.+++.... ++|+ +++. .+.+. +...|+|.|+.......++...+...+
T Consensus 680 vIelLrE~GlrDkIkVI-VGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l 733 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIG-CGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKR 733 (763)
T ss_dssp HHHHHHHTTCTTTSEEE-EECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEE-EECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHH
Confidence 77778876553 5555 4444 44432 458999999876677777666665443
No 130
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=94.70 E-value=0.73 Score=32.43 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCC-cceEEEEeCCCCH
Q 048318 35 CFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGI-KIKIVGVTSLNSE 110 (145)
Q Consensus 35 ~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~-~~~iv~l~~~~~~ 110 (145)
+.....+.......|..+. .+.+.+++...... ..|+|-+.-.... ..+++.+..+....+ ++|+|.-++-.+.
T Consensus 148 ~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~--Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~ 225 (272)
T 3qja_A 148 QSVLVSMLDRTESLGMTALVEVHTEQEADRALKA--GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGT 225 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSH
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC--CCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCH
Confidence 3344445555566788765 77888887766654 4788877632111 123566677766544 6888887777889
Q ss_pred HHHHHHHHhCCceeecC-----CCCHHHHHHHHH
Q 048318 111 AEREAFMQAGLDLCHTK-----PLSVDKILPLME 139 (145)
Q Consensus 111 ~~~~~~~~~g~~~~l~k-----P~~~~~L~~~i~ 139 (145)
+....+...|++++++- .-++.+....+.
T Consensus 226 edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~ 259 (272)
T 3qja_A 226 ADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLV 259 (272)
T ss_dssp HHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHH
Confidence 99999999999999753 345555555443
No 131
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=94.50 E-value=0.75 Score=32.12 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=60.1
Q ss_pred HHHHHHHcCCe--EEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc--CCcceEEEEeCCCCHHHHHH
Q 048318 41 HSMALKSLGFK--VEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM--GIKIKIVGVTSLNSEAEREA 115 (145)
Q Consensus 41 l~~~L~~~g~~--v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~iv~l~~~~~~~~~~~ 115 (145)
++..|...... ++... +....++.+.. ..+|.|++|++..-.+...+...++.. ....++|=+. ..+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~-~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn-~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE-AGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIP-QVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH-TTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECS-SCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc-CCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeC-CCCHHHHHH
Confidence 44555543322 33333 44555666655 569999999988766666555555542 1223444444 445568889
Q ss_pred HHHhCCceeec-CCCCHHHHHHHHHHH
Q 048318 116 FMQAGLDLCHT-KPLSVDKILPLMEDL 141 (145)
Q Consensus 116 ~~~~g~~~~l~-kP~~~~~L~~~i~~~ 141 (145)
++..|++.++. |--+.+++...+..+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999998854 344567776665543
No 132
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=94.49 E-value=0.84 Score=35.66 Aligned_cols=114 Identities=10% Similarity=0.151 Sum_probs=73.4
Q ss_pred CceEEEE----eCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhc
Q 048318 25 RLFALVV----DDDCFIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii----~~~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~ 95 (145)
+.+||+. |-|..-...+..+|+..||+|... ...++.++.+.. ..||+|.+...+.. . ...++++.+++.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~-~~~diVgLS~l~t~~~~~m~~~i~~Lr~~ 176 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE-VNADLIGLSGLITPSLDEMVNVAKEMERQ 176 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH-HTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEEecCCCCHHHHHHHHHHHHHc
Confidence 3467777 556666778888889999998743 467778888876 57999999886642 1 233577788877
Q ss_pred CCcceEEEEeCCCCHHHHHHHH---HhCCceeecCCCCHHHHHHHHHHHH
Q 048318 96 GIKIKIVGVTSLNSEAEREAFM---QAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.+++||++=+...+.......+ -.|+|.|- -+..+-.....+++
T Consensus 177 g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya---~DA~~Av~~a~~l~ 223 (579)
T 3bul_A 177 GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYV---QNASRTVGVVAALL 223 (579)
T ss_dssp TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEEC---CSHHHHHHHHHHHT
T ss_pred CCCCeEEEEccccchhhhhhhhhhcccCCeEEE---CCHHHHHHHHHHHh
Confidence 7788887655555555432111 12888884 33344444444433
No 133
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=94.39 E-value=0.31 Score=34.02 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCC------CHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLN------SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~------~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.+++++.+++..|++|+++++... -......+..+|+++++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 346678888776578998874332 135567788999999998777777766555443
No 134
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.33 E-value=0.65 Score=30.92 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=69.2
Q ss_pred eEEEEeCcH--HHHHHHHHHHHHcCCeEEE----EcCHHHHHHHHHcCCCccEEEEecCCC----CCCHHHHHHHHHhcC
Q 048318 27 FALVVDDDC--FIRTIHSMALKSLGFKVEV----AENGKEAVDLFRSGAKFDIVFIDKEMP----VMNGIEATREIRSMG 96 (145)
Q Consensus 27 ~iLii~~~~--~~~~~l~~~L~~~g~~v~~----~~~~~~al~~~~~~~~~dlvl~d~~~~----~~~~~~~~~~l~~~~ 96 (145)
..+++...+ .....+.+..++.|..+.. ..+..+.++.+.+ ...|.|-++.... ...+.+.++.+++..
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-AGADMLAVHTGTDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-HTCCEEEEECCHHHHHTTCCSHHHHHHHHHHC
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-cCCCEEEEcCCCcccccCCCCHHHHHHHHHHc
Confidence 345555443 3335566666777866553 2344343444433 3478877653211 113577888888765
Q ss_pred CcceEEEEeCCCCHHHHHHHHHhCCceee-----cCCCCHHHHHHHHHHHHh
Q 048318 97 IKIKIVGVTSLNSEAEREAFMQAGLDLCH-----TKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~L~~~i~~~~~ 143 (145)
+++|+++-.+- +.+....+.+.|++.++ .+.-++.+....+.+.++
T Consensus 158 ~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 158 RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 67888765444 47778888999999885 455667666666665554
No 135
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=93.84 E-value=1.3 Score=33.09 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=60.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+..|+++|.++...+.++ ..|+.+.... +-.+.++...- ...|+|++-..- +.....++...++.+++++||+
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi-~~A~~viv~~~~-~~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA-AKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT-TTCSEEEECCSS-HHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC-CccCEEEECCCC-hHHHHHHHHHHHHhCCCCeEEE
Confidence 456788888877765544 4566665443 33344554432 357888886532 2234556677788888888877
Q ss_pred EeCCCCHHHHHHHHHhCCceeec
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
-+. +........+.|++.++.
T Consensus 101 ra~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 101 RAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EES--SHHHHHHHHHTTCSSCEE
T ss_pred EEC--CHHHHHHHHHCCCCEEEC
Confidence 665 566677788999998763
No 136
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=93.66 E-value=0.99 Score=30.05 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=69.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHc-CCCccEEEEec----------CCC----CCCHHH
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRS-GAKFDIVFIDK----------EMP----VMNGIE 87 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~-~~~~dlvl~d~----------~~~----~~~~~~ 87 (145)
++.+|+++-..+...+..+......+.++. ...+.++++..... ...+|+++.-= +.| ..+++|
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~D 82 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFD 82 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHH
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhH
Confidence 456889999999999988888887776765 55678877776543 35688887321 111 246777
Q ss_pred HHHHHHh---cCCcceEEEEeCCC-CHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 88 ATREIRS---MGIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 88 ~~~~l~~---~~~~~~iv~l~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+++.+.. ....+-+|-+.+.. .-......+.....-| ...+.+++...++++.+
T Consensus 83 il~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~--~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 83 TMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEF--LFSSEDEITTLISKVKT 140 (196)
T ss_dssp HHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEE--EECSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEE--EeCCHHHHHHHHHHHHH
Confidence 7776654 23333333333322 2233444443333333 34556777777776654
No 137
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=93.51 E-value=1.3 Score=31.03 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=65.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
...|-+.-.++.....+...|...-|.+..+.+.++.++.+.. +...|++++... +..-..+...+.+.+--.|+|+
T Consensus 9 ~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP~vi 86 (289)
T 1r8j_A 9 QIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVPAIV 86 (289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCCEEE
T ss_pred ceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccccEEE
Confidence 4677788899999999999998778999999999998888854 346999999872 1236678888888888889998
Q ss_pred EeCC
Q 048318 104 VTSL 107 (145)
Q Consensus 104 l~~~ 107 (145)
+...
T Consensus 87 l~~~ 90 (289)
T 1r8j_A 87 VGDR 90 (289)
T ss_dssp ESCC
T ss_pred eccC
Confidence 8664
No 138
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=93.11 E-value=0.7 Score=32.28 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCcceEEEEeCC------CCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSL------NSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~------~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
++++++.+|+...++|+++++.. ........+..+|++.++.-....+++...+..
T Consensus 81 ~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~ 142 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQA 142 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence 34667888876567888876522 125667888999999998876666665555443
No 139
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=93.04 E-value=0.092 Score=36.81 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=47.0
Q ss_pred CceEEEEeCc--HHHHHHHHHHHHHcCCeEEEEcCHHH--HHHHHHcCCCccEEEEecCCC-CC--CHHHHHHHHHhcCC
Q 048318 25 RLFALVVDDD--CFIRTIHSMALKSLGFKVEVAENGKE--AVDLFRSGAKFDIVFIDKEMP-VM--NGIEATREIRSMGI 97 (145)
Q Consensus 25 ~~~iLii~~~--~~~~~~l~~~L~~~g~~v~~~~~~~~--al~~~~~~~~~dlvl~d~~~~-~~--~~~~~~~~l~~~~~ 97 (145)
+.+||||+++ +.....+...|+..||.|......+- -...+. .||+||++.... .. +..+.++..-+.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~---~yDvIIl~d~~~~~l~~~~~~~L~~yV~~-- 78 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA---KQDLVILSDYPAERMTAQAIDQLVTMVKA-- 78 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH---TCSEEEEESCCGGGBCHHHHHHHHHHHHT--
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh---cCCEEEEcCCccccCCHHHHHHHHHHHHh--
Confidence 4579999988 66888999999999999987654321 112332 499999873221 12 223344333333
Q ss_pred cceEEEEeCCC
Q 048318 98 KIKIVGVTSLN 108 (145)
Q Consensus 98 ~~~iv~l~~~~ 108 (145)
.--+|++....
T Consensus 79 GGgLi~~gG~~ 89 (259)
T 3rht_A 79 GCGLVMLGGWE 89 (259)
T ss_dssp TCEEEEECSTT
T ss_pred CCeEEEecCcc
Confidence 34566665543
No 140
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.99 E-value=0.97 Score=27.99 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=59.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+..|.++|.++...+.++ ..|+.+.... +..+.++...- ...|++++-..-. ......+..+++..+..++++
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~~-~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL-ECAKWLILTIPNG-YEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG-GGCSEEEECCSCH-HHHHHHHHHHHHHCSSSEEEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc-ccCCEEEEECCCh-HHHHHHHHHHHHHCCCCeEEE
Confidence 345677777776655443 3466554433 23334443322 2468887754321 122335566677777888776
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.+. +......+.+.|++..+. | ..+....+.+.
T Consensus 104 r~~--~~~~~~~l~~~G~d~vi~-p--~~~~a~~i~~~ 136 (140)
T 3fwz_A 104 RAH--YDDEVAYITERGANQVVM-G--EREIARTMLEL 136 (140)
T ss_dssp EES--SHHHHHHHHHTTCSEEEE-H--HHHHHHHHHHH
T ss_pred EEC--CHHHHHHHHHCCCCEEEC-c--hHHHHHHHHHH
Confidence 554 555667778899988763 3 23444444443
No 141
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=92.81 E-value=1.8 Score=30.51 Aligned_cols=100 Identities=8% Similarity=0.118 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec-CCCCC-CHHHHHHHHHhc-CCcceEEEEeCCCCHHH
Q 048318 37 IRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK-EMPVM-NGIEATREIRSM-GIKIKIVGVTSLNSEAE 112 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~-~~~~~-~~~~~~~~l~~~-~~~~~iv~l~~~~~~~~ 112 (145)
....+.......|..+. .+.+.+++.+.+. ..+|+|=++- ++... -.++....+... ..+.++|.-++-.+.+.
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~--~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~ed 234 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALK--LSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHED 234 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTT--SCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh--cCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHH
Confidence 34445555566798865 8889999876664 3588876663 22211 124445555443 33678888888889999
Q ss_pred HHHHHHhCCceeec-----CCCCHHHHHHHH
Q 048318 113 REAFMQAGLDLCHT-----KPLSVDKILPLM 138 (145)
Q Consensus 113 ~~~~~~~g~~~~l~-----kP~~~~~L~~~i 138 (145)
+..+.+.|++++++ ++-++.+-.+.+
T Consensus 235 v~~l~~~Ga~gvLVG~almr~~d~~~~~~~l 265 (272)
T 3tsm_A 235 CLRLEKSGIGTFLIGESLMRQHDVAAATRAL 265 (272)
T ss_dssp HHHHHTTTCCEEEECHHHHTSSCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcHHHcCCcCHHHHHHHH
Confidence 99999999999974 566655544433
No 142
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=91.83 E-value=2 Score=28.83 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=50.4
Q ss_pred CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhC
Q 048318 49 GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 49 g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
|..+- .+.+.+++...... ..|.|+++...+. ..+++.++.+++.. ++|+++.++- +.+....++..|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~--gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE--DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT--TCSEEEEECCC----------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC--CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcC
Confidence 54433 56788887766654 4899999764332 13577788877644 6788877666 777888899999
Q ss_pred Cceee
Q 048318 121 LDLCH 125 (145)
Q Consensus 121 ~~~~l 125 (145)
++.+.
T Consensus 186 a~gv~ 190 (221)
T 1yad_A 186 ADGIA 190 (221)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99874
No 143
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=90.55 E-value=3.4 Score=29.22 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcceEEEEeCCCCHHHHHHHH
Q 048318 41 HSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 41 l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
++..|+..... ++.-.+..+.++.+.. ..+|.+++|++....+..++...++.. ....++++=+...+...+..++
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~-~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~l 108 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAG-AGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLL 108 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT-SCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHh-CCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 45555543213 3333344455566655 579999999987655555555555432 2244555545566677888999
Q ss_pred HhCCceeec-CCCCHHHHHHHHHH
Q 048318 118 QAGLDLCHT-KPLSVDKILPLMED 140 (145)
Q Consensus 118 ~~g~~~~l~-kP~~~~~L~~~i~~ 140 (145)
+.|++.++. |--+.+++...++.
T Consensus 109 d~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 109 DVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHH
T ss_pred hCCCCEEEeCCCCCHHHHHHHHHH
Confidence 999998754 34456776665543
No 144
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=90.55 E-value=1.5 Score=31.19 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=50.2
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.+++-.+.-. ++-.+.++..++..|..||.+-+. +.++..+++.+|+|-+....++++++...++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 567777544332 233466777777777788877554 457788999999999999999999988888754
No 145
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=90.51 E-value=1.8 Score=28.78 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=52.9
Q ss_pred HHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhC
Q 048318 43 MALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 43 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
...+..|..+. -+.+..++...... ..|.|.+.. .+..|.+.++.+++..+ ++|+++.++-. .+....++..|
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~--G~d~v~v~~--t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~G 169 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA--GAQALKIFP--SSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAG 169 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT--TCSEEEETT--HHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHT
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC--CCCEEEEec--CCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcC
Confidence 34445565533 46788888766543 589888621 11235778888877554 58888776665 66777888999
Q ss_pred CceeecC
Q 048318 121 LDLCHTK 127 (145)
Q Consensus 121 ~~~~l~k 127 (145)
++.+..-
T Consensus 170 a~gv~vG 176 (212)
T 2v82_A 170 CAGAGLG 176 (212)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9998643
No 146
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=90.24 E-value=2.2 Score=29.55 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=54.1
Q ss_pred CHHHHHHHHHcCCCccEEEEecC---C-CCC-CHHHHHHHHHhcCCcceEEE-EeCCCCHHHHHHHHHhCCceeecCCCC
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKE---M-PVM-NGIEATREIRSMGIKIKIVG-VTSLNSEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~---~-~~~-~~~~~~~~l~~~~~~~~iv~-l~~~~~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
+..+.++.+.+ ...|.+=+|.- . |.. -|..+++.+|+..++.|+.+ +--.........+.++|+|.+-.....
T Consensus 41 ~L~~~i~~l~~-~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea 119 (246)
T 3inp_A 41 RLGDDVKAVLA-AGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEA 119 (246)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGG
T ss_pred hHHHHHHHHHH-cCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcccc
Confidence 45666777765 45677766652 1 333 37899999998765666655 433444567888899999988776544
Q ss_pred HHHHHHHHHHH
Q 048318 131 VDKILPLMEDL 141 (145)
Q Consensus 131 ~~~L~~~i~~~ 141 (145)
...+.+.++.+
T Consensus 120 ~~~~~~~i~~i 130 (246)
T 3inp_A 120 SEHIDRSLQLI 130 (246)
T ss_dssp CSCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 44555555544
No 147
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=89.99 E-value=1.3 Score=31.04 Aligned_cols=75 Identities=23% Similarity=0.162 Sum_probs=48.2
Q ss_pred HHHHHcCCCccEEEEecCCCCC----------------------CHHHHHHHHHhcCCcceEEEEeCC------CCHHHH
Q 048318 62 VDLFRSGAKFDIVFIDKEMPVM----------------------NGIEATREIRSMGIKIKIVGVTSL------NSEAER 113 (145)
Q Consensus 62 l~~~~~~~~~dlvl~d~~~~~~----------------------~~~~~~~~l~~~~~~~~iv~l~~~------~~~~~~ 113 (145)
++.+.+ . .|+|.++.-.++. +.++.++.+|+. .++|+++++-. ......
T Consensus 36 ~~~l~~-~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~~~f~ 112 (271)
T 1ujp_A 36 VEEVLP-Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLMTYLNPVLAWGPERFF 112 (271)
T ss_dssp HHHHGG-G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSCEEEECCHHHHHHHCHHHHH
T ss_pred HHHHHh-c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEecCcHHHHhhHHHHH
Confidence 334445 5 8998888655431 135677888876 67899987422 224556
Q ss_pred HHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 114 EAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 114 ~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
..+..+|+++++.--+..++....+.
T Consensus 113 ~~~~~aG~dGviv~Dl~~ee~~~~~~ 138 (271)
T 1ujp_A 113 GLFKQAGATGVILPDLPPDEDPGLVR 138 (271)
T ss_dssp HHHHHHTCCEEECTTCCGGGCHHHHH
T ss_pred HHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 77889999999876555555544443
No 148
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=89.99 E-value=0.76 Score=36.33 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCeEEEE---cCHHHHHHHHHcCCCccEEEEecCCCC-C-CHHHHHHHHHhcCCcceEEEEeCCC-C
Q 048318 36 FIRTIHSMALKSLGFKVEVA---ENGKEAVDLFRSGAKFDIVFIDKEMPV-M-NGIEATREIRSMGIKIKIVGVTSLN-S 109 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~~dlvl~d~~~~~-~-~~~~~~~~l~~~~~~~~iv~l~~~~-~ 109 (145)
.-...+..+|+..||+|... .+ ++..+...+ ..+|+|.+...+.. + ..-++++.+++... ..| ++++.. +
T Consensus 525 ~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e-~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~-~~V-~vgG~P~~ 600 (637)
T 1req_B 525 GREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK-SGAQVADLCSSAKVYAQQGLEVAKALKAAGA-KAL-YLSGAFKE 600 (637)
T ss_dssp HHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH-HTCSEEEEECCHHHHHHHHHHHHHHHHHTTC-SEE-EEESCGGG
T ss_pred hhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh-cCCCEEEEecccHHHHHHHHHHHHHHHhCCC-CeE-EEeCCCCc
Confidence 34467777889999998743 34 777777766 46898887653321 1 23467777887665 344 455542 2
Q ss_pred H-HHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 110 E-AEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 110 ~-~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
. +....+.+ |+|+|+.--.+..+++..+..-
T Consensus 601 d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~~~ 632 (637)
T 1req_B 601 FGDDAAEAEK-LIDGRLFMGMDVVDTLSSTLDI 632 (637)
T ss_dssp GGGGHHHHHH-HCCCEECTTCCHHHHHHHHHHH
T ss_pred cchhhHHHHh-ccceEecCCcCHHHHHHHHHHH
Confidence 1 11345556 9999987777777777666543
No 149
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=89.84 E-value=3.5 Score=28.29 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=58.5
Q ss_pred HHHHHHHcCCe-EEEEcCHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHH
Q 048318 41 HSMALKSLGFK-VEVAENGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 41 l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
+...+...+.- |....+.+++...... .....++=+.+ ...++.+.++.+++..+.. ++-...-.+.+....+.
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~e~I~~l~~~~~~~-~iGaGTVlt~~~a~~Ai 103 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITF--RSDAAVEAIRLLRQAQPEM-LIGAGTILNGEQALAAK 103 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHCTTC-EEEEECCCSHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHhCCCC-EEeECCcCCHHHHHHHH
Confidence 34455555633 5566677777665432 13455555544 4557889999998876653 44444556788899999
Q ss_pred HhCCceeecCCCCHHHHHHHH
Q 048318 118 QAGLDLCHTKPLSVDKILPLM 138 (145)
Q Consensus 118 ~~g~~~~l~kP~~~~~L~~~i 138 (145)
.+|++.++. |-...++....
T Consensus 104 ~AGA~fIvs-P~~~~~vi~~~ 123 (232)
T 4e38_A 104 EAGATFVVS-PGFNPNTVRAC 123 (232)
T ss_dssp HHTCSEEEC-SSCCHHHHHHH
T ss_pred HcCCCEEEe-CCCCHHHHHHH
Confidence 999987764 54444454443
No 150
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=89.82 E-value=4.2 Score=29.16 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=62.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+++++++.+. ..++..++...-.+.. ..+..+....+.. .|++++-....+.-+..+++.+.. .+|+|
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~---adv~v~ps~~~e~~~~~~~Ea~a~---G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS---ADVYCAPHLGGESFGIVLVEAMAA---GTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH---SSEEEECCCSCCSSCHHHHHHHHH---TCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH---CCEEEecCCCCCCCchHHHHHHHc---CCCEE
Confidence 455666666555 4555554432112222 2233444444443 577776522133445566666654 46766
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+ +.. ....+....|..+++..|-+.+++...|.++++
T Consensus 312 ~-~~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 A-SDL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp E-CCC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred E-ecC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 4 332 345566777888999999999999999988875
No 151
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=89.73 E-value=2.8 Score=28.70 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHh--cCCcceEEEEeCCCC
Q 048318 39 TIHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRS--MGIKIKIVGVTSLNS 109 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~--~~~~~~iv~l~~~~~ 109 (145)
...-..|+..|+.+.. +.++...+..+.. .+||.|=+|-.+- +.....+++.+.. +...+++| ..+-.+
T Consensus 142 ~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~-l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt 219 (259)
T 3s83_A 142 AVILKTLRDAGAGLALDDFGTGFSSLSYLTR-LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVEN 219 (259)
T ss_dssp HHHHHHHHHHTCEEEEECC---CHHHHHHHH-SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCS
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHHh-CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCC
Confidence 3344567788988764 4466667777777 6899999996432 1223344554443 12244554 456677
Q ss_pred HHHHHHHHHhCCcee----ecCCCCHHHHHHHHHHH
Q 048318 110 EAEREAFMQAGLDLC----HTKPLSVDKILPLMEDL 141 (145)
Q Consensus 110 ~~~~~~~~~~g~~~~----l~kP~~~~~L~~~i~~~ 141 (145)
.+....+.+.|++.+ +.||...+++...+...
T Consensus 220 ~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~~ 255 (259)
T 3s83_A 220 AEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEA 255 (259)
T ss_dssp HHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHHh
Confidence 888888888886543 66899999998877653
No 152
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.72 E-value=1.9 Score=25.18 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=33.7
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEE-Ec--C---HHHHHHHHHcCCCccEEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEV-AE--N---GKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~-~~--~---~~~al~~~~~~~~~dlvl~ 76 (145)
+|||+.++......+-.+++..||.|+. .. + .++.-+.+.+ ..|.+-=+
T Consensus 53 kiliisndkqllkemlelisklgykvflllqdqdeneleefkrkies-qgyevrkv 107 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIES-QGYEVRKV 107 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHT-TTCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHh-CCeeeeec
Confidence 6899999998888888888889998873 22 2 2334445555 55665443
No 153
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=89.72 E-value=0.62 Score=32.71 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCcceEEEEeCCC------CHHHHHHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLN------SEAEREAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~------~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
+++++.+|+....+|+++++-.. -+....++.++|+|.++.-...+++....+.
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~ 142 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSK 142 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHH
Confidence 67777777765678988876432 2556888899999998876565665544443
No 154
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=89.39 E-value=4.1 Score=28.41 Aligned_cols=99 Identities=8% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHcC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcceEEEEeCCCCHHHHHHHH
Q 048318 41 HSMALKSLG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 41 l~~~L~~~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
++..|+... +.++......+.++.+.. ..+|.+++|++..-.+..++...++.. ....++++=+...+...+..++
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~-~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l 87 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVL 87 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT-TCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 445554322 233333344555566655 579999999977655555555555432 1234444444566778888999
Q ss_pred HhCCceeec-CCCCHHHHHHHHHH
Q 048318 118 QAGLDLCHT-KPLSVDKILPLMED 140 (145)
Q Consensus 118 ~~g~~~~l~-kP~~~~~L~~~i~~ 140 (145)
+.|++.++. |--+.+++...++.
T Consensus 88 ~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 88 DIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HhCCCEEEeCCCCCHHHHHHHHHH
Confidence 999998754 34456776655544
No 155
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=89.32 E-value=1.6 Score=33.42 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCCC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVMN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..+.+.+ ..+|+|.+|...+... -.+.++.+++..++.|+++ ..-.+.+....+.++|+|.+.+
T Consensus 233 ~~~a~~l~~-aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE-AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-ccCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 333344444 3699999998766443 4578899988877888765 4456778889999999999975
No 156
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=89.05 E-value=0.94 Score=31.87 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcceEEEEeCC------CCHHHHHHHHHhCCceeecCCCCHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSL------NSEAEREAFMQAGLDLCHTKPLSVDKILPLM 138 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~------~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i 138 (145)
.+++++.+|+..+.+|+++++-. .-.....++.++|+|+++.--+.+++.....
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 45677788876678899987632 3355688889999999887655555544333
No 157
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=88.94 E-value=2.9 Score=30.34 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=59.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe----------EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK----------VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~----------v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
+.+.+|+.+.+.....+++.+++.|.. +......++....+. ..|++++--...+.-|..+++.+.
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~---~aDv~vl~ss~~e~gg~~~lEAmA- 300 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP---VGKIAIVGGTFVNIGGHNLLEPTC- 300 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG---GEEEEEECSSSSSSCCCCCHHHHT-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH---hCCEEEECCcccCCCCcCHHHHHH-
Confidence 456777887776656677777766643 222222233333332 368877743332222333444433
Q ss_pred cCCcceEEEEeCCCCHHH-HHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 95 MGIKIKIVGVTSLNSEAE-REAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~-~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
..+|+|.-+...+... .......| ++..+-+.++|...+.++++
T Consensus 301 --~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 301 --WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp --TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred --hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 3678874222233233 32223333 55566789999999988875
No 158
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=88.74 E-value=2.4 Score=24.82 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=50.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCCCC-HHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPVMN-GIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~iv 102 (145)
++-|++...+.+...-.+..+++.||.+..+.+..+.-..+.+ -.+|+.-++-.-..+.. .-..++..++.+..+-||
T Consensus 2 nivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvlii 81 (134)
T 2l69_A 2 NIVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLII 81 (134)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEE
T ss_pred cEEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEE
Confidence 4456777888888889999999999999999998887666543 12344222222211211 123445555666566555
Q ss_pred EEeC
Q 048318 103 GVTS 106 (145)
Q Consensus 103 ~l~~ 106 (145)
+.-.
T Consensus 82 iydq 85 (134)
T 2l69_A 82 IYDQ 85 (134)
T ss_dssp EECS
T ss_pred EEeC
Confidence 5443
No 159
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=88.61 E-value=0.78 Score=32.43 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCceEEEEeC-----cHHHHHHHHHHHHHcC-CeEEEEcCHH-----HHHHHHHcCCCccEEEEecCCCCC
Q 048318 24 LRLFALVVDD-----DCFIRTIHSMALKSLG-FKVEVAENGK-----EAVDLFRSGAKFDIVFIDKEMPVM 83 (145)
Q Consensus 24 ~~~~iLii~~-----~~~~~~~l~~~L~~~g-~~v~~~~~~~-----~al~~~~~~~~~dlvl~d~~~~~~ 83 (145)
++++|||+.. -+.....+..+|++.| |.|....+.. +.+.. .- ..+|+|+++......
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~-~L-~~~D~vV~~~~~~~l 71 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVL-DF-SPYQLVVLDYNGDSW 71 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCC-CC-TTCSEEEECCCSSCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhh-hh-hcCCEEEEeCCCCcC
Confidence 4678899866 3666788999999888 9999876641 22211 11 359999988754433
No 160
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=88.47 E-value=2.5 Score=32.23 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=49.0
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..+..+.+.+ ..+|+|.+|...+.. .-.+.++.+++..+++|+++ ..-.+.+....+.++|+|.+.+
T Consensus 229 ~~~~~a~~l~~-aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVA-AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHH-TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhh-cccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 33444444444 469999999876543 23578888888777777765 4456778889999999999975
No 161
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=88.38 E-value=2.9 Score=28.44 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCC------HHHHHHHHHhCCceeecCCCCHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNS------EAEREAFMQAGLDLCHTKPLSVDKI 134 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~------~~~~~~~~~~g~~~~l~kP~~~~~L 134 (145)
+.+.++.+++.. +.|+.+++.... ......+...|++.++.-....++.
T Consensus 68 ~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 68 AFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHA 122 (248)
T ss_dssp HHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGH
T ss_pred HHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhH
Confidence 367778887753 568777663222 4677888899999998765444443
No 162
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=88.32 E-value=3.5 Score=27.68 Aligned_cols=67 Identities=7% Similarity=0.091 Sum_probs=47.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe---EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK---VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..+|..+|-++...+..+..++..|+. +. ...+..+.+..+.. ..||+|++|.... +-.++++.+..
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~-~~fD~V~~d~~~~--~~~~~l~~~~~ 151 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN-DSYQLVFGQVSPM--DLKALVDAAWP 151 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT-TCEEEEEECCCTT--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC-CCcCeEEEcCcHH--HHHHHHHHHHH
Confidence 357899999999999999999987764 55 45566665543323 4799999997543 33446665554
No 163
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=88.26 E-value=4 Score=26.92 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=53.6
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee-
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH- 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l- 125 (145)
.+.+..++...... .+|.++++...+. ..+++.++.+++.. ++|+++..+-. .+....+...|++.+.
T Consensus 114 ~~~t~~e~~~~~~~--g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEKK--GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHHH--TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHhc--CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 46677776655443 5899998753332 34788888887654 67887765555 6667778889999884
Q ss_pred ----cCCCCHHHHHHHHHHH
Q 048318 126 ----TKPLSVDKILPLMEDL 141 (145)
Q Consensus 126 ----~kP~~~~~L~~~i~~~ 141 (145)
.+.-++.+..+.+.+.
T Consensus 190 gs~i~~~~d~~~~~~~~~~~ 209 (215)
T 1xi3_A 190 ISAVMGAEDVRKATEELRKI 209 (215)
T ss_dssp SHHHHTSSSHHHHHHHHHHH
T ss_pred hHHHhCCCCHHHHHHHHHHH
Confidence 3333454444444433
No 164
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=87.91 E-value=2.6 Score=30.95 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 58 GKEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..+.++.+.+ ..+|+|.+|...... .-.+.++.+++..+++++++ ..-.+.+....+.++|+|.+.+
T Consensus 109 ~~~~~~~lie-aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 109 NEERVKALVE-AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp CHHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEE
Confidence 3455555555 469999998653222 23467788888777777764 3345778888899999999876
No 165
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=87.67 E-value=5.4 Score=28.20 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=48.5
Q ss_pred EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 52 v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
...+.+.+++.+.+.. ..|+|++|- ++..+-.+..+.++...+++++ ..++.-+.+.+.+....|+|.+.
T Consensus 198 ~Vev~t~eea~eal~a--GaD~I~LDn-~~~~~~~~~v~~l~~~~~~v~i-eaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 198 EVEVDSLEQLDAVLPE--KPELILLDN-FAVWQTQTAVQRRDSRAPTVML-ESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEESSHHHHHHHGGG--CCSEEEEET-CCHHHHHHHHHHHHHHCTTCEE-EEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEeCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHHhhccCCCeEE-EEECCCCHHHHHHHHhcCCCEEE
Confidence 3377789999888875 489999996 3222233455555554445554 46777778888889999998875
No 166
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=87.52 E-value=5 Score=27.22 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHH
Q 048318 83 MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKIL 135 (145)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~ 135 (145)
.++.+.++.+++..+. .+|-...-.+.+....+.++|++.++. |....++.
T Consensus 49 ~~a~~~I~~l~~~~p~-~~IGAGTVlt~~~a~~ai~AGA~fivs-P~~~~evi 99 (217)
T 3lab_A 49 EAGLAAISAIKKAVPE-AIVGAGTVCTADDFQKAIDAGAQFIVS-PGLTPELI 99 (217)
T ss_dssp TTHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSEEEE-SSCCHHHH
T ss_pred ccHHHHHHHHHHHCCC-CeEeeccccCHHHHHHHHHcCCCEEEe-CCCcHHHH
Confidence 3566666666665554 344444445667777777777766554 43333333
No 167
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=87.48 E-value=2.7 Score=30.06 Aligned_cols=69 Identities=14% Similarity=0.062 Sum_probs=51.2
Q ss_pred ccEEEEecCCC--CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMP--VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~--~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.|++-.+.- -++-.+.++..|+..|..||.+-+. +.++..+++.+|+|-++.-.++++++...+..+
T Consensus 178 ~D~vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 178 CDGVLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp TSCEEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cceEEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 57777754321 1233466777787777788887665 457888999999999999999999999888764
No 168
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=87.43 E-value=5.5 Score=27.53 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=59.2
Q ss_pred HHHHHHHcC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcceEEEEeCCCCHHHHHHHH
Q 048318 41 HSMALKSLG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFM 117 (145)
Q Consensus 41 l~~~L~~~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~iv~l~~~~~~~~~~~~~ 117 (145)
++..|+... +.++......+.++.+.. ..+|.+++|++....+..+.-..++.. ....++++=+...+...+..++
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~-~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l 88 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL-AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLL 88 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT-SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHH
Confidence 455554432 233333345555566655 579999999977644444444444432 2244555556666777888999
Q ss_pred HhCCceeec-CCCCHHHHHHHHHH
Q 048318 118 QAGLDLCHT-KPLSVDKILPLMED 140 (145)
Q Consensus 118 ~~g~~~~l~-kP~~~~~L~~~i~~ 140 (145)
+.|++.++. |--+.+++...++.
T Consensus 89 ~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 89 DIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHT
T ss_pred hcCCceeeecCcCCHHHHHHHHHH
Confidence 999998754 34567777555443
No 169
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=87.40 E-value=4.5 Score=28.84 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=45.4
Q ss_pred EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 53 EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 53 ~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
+.+.+.+++.+.+.. ..|+|.+|- ++-.++-+..+...+++++ ..++.-+.+.+.+....|+|.+
T Consensus 214 VEvdtlde~~eAl~a--GaD~I~LDn----~~~~~l~~av~~i~~~v~i-eaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH--GARSVLLDN----FTLDMMRDAVRVTEGRAVL-EVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT--TCEEEEEES----CCHHHHHHHHHHHTTSEEE-EEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc--CCCEEEECC----CCHHHHHHHHHHhCCCCeE-EEEcCCCHHHHHHHHHcCCCEE
Confidence 478899998888875 489999984 3333443344434445555 4677777778888889999777
No 170
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=87.08 E-value=2.3 Score=30.33 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=42.5
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.+++-.+.-. .+-.+.++..++..|..||.+-... .++..+++.+|+|.+..-.++++++...++.+
T Consensus 180 ~d~vlikdNHi~~~G~i~~Av~~~r~~~p~~~ieVEvdt--lde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 180 YAGILIKENHIAAAGGVGEALDAAFALNAEVPVQIEVET--LDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp ---------------CHHHHHHHHHHHC--CCCEEEESS--HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CcEEEEeHHHHHHcCCHHHHHHHHHHhCCCCCEEEEeCC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 566666443322 2344667778877777787776654 45688899999999999999999999888765
No 171
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=86.96 E-value=3.5 Score=31.63 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+.++.+.+ ...|++.+|...+...+ .++++.+++..+.+|+++ ..-.+.+....+.++|+|.+..
T Consensus 258 ~era~aLve-aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 258 MTRIDALVK-ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-hccceEEecccccchhhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHHHhCCCEEEE
Confidence 344444445 46999999987665443 578889988877777774 4455778889999999998864
No 172
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=86.56 E-value=3.1 Score=27.41 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=45.9
Q ss_pred EEcCHHHHHHHH---HcCCCccEEEEecCCCCCCHHHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceeecCCC
Q 048318 54 VAENGKEAVDLF---RSGAKFDIVFIDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 54 ~~~~~~~al~~~---~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~ 129 (145)
...+.+++.+.+ .. ...+++-+.... ..+.+.++.+|+..+ +. ++-++.-.+......+.+.|+|.+ .-|.
T Consensus 17 ~~~~~~~~~~~~~~~~~-~G~~~iev~~~~--~~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~ 91 (205)
T 1wa3_A 17 RANSVEEAKEKALAVFE-GGVHLIEITFTV--PDADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPH 91 (205)
T ss_dssp CCSSHHHHHHHHHHHHH-TTCCEEEEETTS--TTHHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSS
T ss_pred ecCCHHHHHHHHHHHHH-CCCCEEEEeCCC--hhHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCC
Confidence 344555544433 23 346666555443 356677888877533 33 333434456777888899999888 5565
Q ss_pred CHHHHHHHH
Q 048318 130 SVDKILPLM 138 (145)
Q Consensus 130 ~~~~L~~~i 138 (145)
...++....
T Consensus 92 ~~~~~~~~~ 100 (205)
T 1wa3_A 92 LDEEISQFC 100 (205)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 544444433
No 173
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=86.50 E-value=2.9 Score=32.40 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=47.3
Q ss_pred HHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 62 VDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 62 l~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
...+.+ ...|++++|...... .-.+.++.+++..|+++|| ...-.+.+....+.++|||.+-
T Consensus 286 ~~aLv~-AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 286 LKLLAE-AGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp HHHHHH-TTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEE
T ss_pred HHHHHh-cCCcEEEEeccccccHHHHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEEe
Confidence 333444 468999999876443 3478889999988888876 5677788888999999999874
No 174
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.41 E-value=3.4 Score=27.57 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=29.7
Q ss_pred CCccEEEEecCC-----CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHH
Q 048318 69 AKFDIVFIDKEM-----PVMNGIEATREIRSMGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 69 ~~~dlvl~d~~~-----~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~ 113 (145)
..||+||+|--. .-.+.-++++.+..++...-+|+ |+...+...
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIl-TGr~ap~~l 167 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVII-TGRGCHRDI 167 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEE-ECSSCCHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEE-ECCCCcHHH
Confidence 469999999632 23466778888888777777765 555444443
No 175
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=86.33 E-value=2.1 Score=28.63 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=46.3
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCC--------CHHHHHHHHHhcC-CcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--------NGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--------~~~~~~~~l~~~~-~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
.+.+.+++.... . ..|.+.++.-.+.. -|++.++.++... .++|++++++-. .+...++++.|++++
T Consensus 94 s~~t~~e~~~A~-~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGA 169 (210)
T ss_dssp EECSHHHHHTTG-G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEE
T ss_pred ecCCHHHHHHHh-h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEE
Confidence 567888876553 3 47999887654322 2677888887653 578998876665 556778889999887
No 176
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=86.29 E-value=3.2 Score=30.42 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 58 GKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..+.++.+.+ ..+|+|.+|........ ++.++.+++..+.+|++ ...-.+.+....+.+.|+|.+.+
T Consensus 101 ~~e~~~~a~~-aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi-~G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 101 ELQRAEALRD-AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIM-AGNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHH-TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHH-cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEE-EcCcCCHHHHHHHHHcCCCEEEE
No 177
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=86.25 E-value=4.1 Score=24.87 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=28.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..|++++-.. .+......+...++.. ...+++.+... .....+...|++..+.
T Consensus 70 ~~d~vi~~~~-~~~~n~~~~~~a~~~~-~~~iia~~~~~--~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 70 GVSAVLITGS-DDEFNLKILKALRSVS-DVYAIVRVSSP--KKKEEFEEAGANLVVL 122 (141)
T ss_dssp TCSEEEECCS-CHHHHHHHHHHHHHHC-CCCEEEEESCG--GGHHHHHHTTCSEEEE
T ss_pred cCCEEEEecC-CHHHHHHHHHHHHHhC-CceEEEEEcCh--hHHHHHHHcCCCEEEC
Confidence 4677776543 1112233445556555 55666555433 3345567888876653
No 178
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=85.80 E-value=3.2 Score=29.92 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
-.+.++..++..|..||.+.+.. .+...+++..|+|.+....++++++...++.+
T Consensus 218 i~~Av~~ar~~~p~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 218 IRQAISTAKQLNPGKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHHHHSTTSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34667777877777788776664 46678899999999998899999998887653
No 179
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=85.54 E-value=6.3 Score=28.05 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=49.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
+.++|.++...+ ++ ..|+.+.... +..+.++...- ...|.+++-..- +......+...++.+++.++++-+.
T Consensus 140 v~vid~~~~~~~-~~----~~~~~~i~gd~~~~~~L~~a~i-~~a~~vi~~~~~-d~~n~~~~~~ar~~~~~~~iiar~~ 212 (336)
T 1lnq_A 140 FVLAEDENVRKK-VL----RSGANFVHGDPTRVSDLEKANV-RGARAVIVDLES-DSETIHCILGIRKIDESVRIIAEAE 212 (336)
T ss_dssp EEEESCGGGHHH-HH----HTTCEEEESCTTSHHHHHHTCS-TTEEEEEECCSS-HHHHHHHHHHHHTTCTTSEEEEECS
T ss_pred EEEEeCChhhhh-HH----hCCcEEEEeCCCCHHHHHhcCh-hhccEEEEcCCc-cHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 666777766554 33 3456555443 22334443322 347777775421 1223344556677777777776655
Q ss_pred CCCHHHHHHHHHhCCceee
Q 048318 107 LNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l 125 (145)
..+ ......+.|++..+
T Consensus 213 ~~~--~~~~l~~~G~d~vi 229 (336)
T 1lnq_A 213 RYE--NIEQLRMAGADQVI 229 (336)
T ss_dssp SGG--GHHHHHHTTCSEEE
T ss_pred CHH--HHHHHHHcCCCEEE
Confidence 433 34455678998775
No 180
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=85.53 E-value=0.88 Score=30.17 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCcceEEE--EeCCCCHHHHHHHHHhCCceeecCCCC
Q 048318 85 GIEATREIRSMGIKIKIVG--VTSLNSEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~--l~~~~~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
|.++++.+++..++.|+++ ....-.......+.+.|+|.+...+..
T Consensus 40 g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 40 GLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp CTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccC
Confidence 4456666666544555553 222112333566667777766555443
No 181
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=85.51 E-value=3 Score=28.92 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=53.9
Q ss_pred HHHHHHHH---HcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCC-CC-CCHHHHHHHHHhcCC----cceEEEEeCCC
Q 048318 39 TIHSMALK---SLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEM-PV-MNGIEATREIRSMGI----KIKIVGVTSLN 108 (145)
Q Consensus 39 ~~l~~~L~---~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~-~~-~~~~~~~~~l~~~~~----~~~iv~l~~~~ 108 (145)
..++.++. ..|..+. .+.+.+++...+.. .+|++=++... .+ ...++....+....+ ++|+|..++-.
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~--gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~ 218 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA--GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYS 218 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH--TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc--CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCC
Confidence 45555554 5688865 77888887766654 35776554322 11 122344444443222 57888877777
Q ss_pred CHHHHHHHHHhCCceeec
Q 048318 109 SEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~ 126 (145)
+.+....+.. |++.+++
T Consensus 219 s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 219 RKEELKALEG-LFDAVLI 235 (254)
T ss_dssp SHHHHHTTTT-TCSEEEE
T ss_pred CHHHHHHHHc-CCCEEEE
Confidence 8999999999 9999974
No 182
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=85.36 E-value=6.7 Score=26.59 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=51.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc-CCcce
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM-GIKIK 100 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-~~~~~ 100 (145)
..+|..+|-++...+..+..++..|+. +. ...+..+.+........||+|++|... .+-..+++.+... .|.-
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~LkpGG- 164 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADK--PNNPHYLRWALRYSRPGT- 164 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCG--GGHHHHHHHHHHTCCTTC-
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCch--HHHHHHHHHHHHhcCCCe-
Confidence 457899999999999999999887754 44 566777655544322379999998742 2334566666543 3443
Q ss_pred EEEEe
Q 048318 101 IVGVT 105 (145)
Q Consensus 101 iv~l~ 105 (145)
++++.
T Consensus 165 ~lv~~ 169 (248)
T 3tfw_A 165 LIIGD 169 (248)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 183
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=85.28 E-value=3.7 Score=26.93 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=45.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC---eEE-EEcCHHHHHHHHHcCCC-ccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF---KVE-VAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~---~v~-~~~~~~~al~~~~~~~~-~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.+|.-+|-++...+..+..++..|+ .+. ...+..+.+..... .. ||+|++|.-....+..++++.+.+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN-QPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS-SCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc-CCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 3689999999999999999888775 454 44566554322112 46 999999865433334556777643
No 184
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=85.01 E-value=6.5 Score=26.15 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCeEE-EEcCHHHHHHHHHcCCCccEEEEecC-C----C----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHH
Q 048318 49 GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKE-M----P----VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ 118 (145)
Q Consensus 49 g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~-~----~----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~ 118 (145)
|..+. .+.+.+++.+.... ..|++.+... . . ...+++.++.+++.. ++|+++.+.-.+.+....++.
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~ 195 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL--GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMD 195 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT--TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHHc--CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHH
Confidence 65554 66678887765543 4788765431 1 1 122456777777653 689988777778999999999
Q ss_pred hCCceeecC
Q 048318 119 AGLDLCHTK 127 (145)
Q Consensus 119 ~g~~~~l~k 127 (145)
.|++.++.-
T Consensus 196 ~Gad~v~vG 204 (223)
T 1y0e_A 196 LGVHCSVVG 204 (223)
T ss_dssp TTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 999988643
No 185
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=85.01 E-value=6.6 Score=26.22 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=46.6
Q ss_pred CceEEEEe------CcHHHHHHHHHHHHHcCCeEEEE----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVD------DDCFIRTIHSMALKSLGFKVEVA----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~------~~~~~~~~l~~~L~~~g~~v~~~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..+|++|. +........++.|+..|+++... .+.++..+.+.+ .|.|++ |+++...+.+.+++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~---ad~I~l----~GG~~~~l~~~L~~ 99 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK---NDFIYV----TGGNTFFLLQELKR 99 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH---SSEEEE----CCSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh---CCEEEE----CCCCHHHHHHHHHH
Confidence 35788886 33357788899999999998877 477777777765 588887 56777777766664
No 186
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=84.75 E-value=6.8 Score=26.09 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=45.1
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCC--------CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMP--------VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~--------~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+..++...... .+|.+++..-.+ ...+++.++.+++..+++|+++..+-. .+...++...|++.+.
T Consensus 122 s~~t~~e~~~a~~~--g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 122 SAHTMSEVKQAEED--GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp EECSHHHHHHHHHH--TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred ecCCHHHHHHHHhC--CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 35677776554443 589998743222 123678888888754347888766555 6666678888998874
No 187
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=84.30 E-value=8.1 Score=27.59 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=55.0
Q ss_pred EEEEeCcHHHHHHHHHHH---HHc-C-CeE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 28 ALVVDDDCFIRTIHSMAL---KSL-G-FKV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L---~~~-g-~~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
|||-|+|-...-.+...+ +.. . ..+ +.+.+.+|+.+.+.. ..|+|++|- + +..++-+..+.....+ .
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a--GaDiImLDn-~---s~~~l~~av~~~~~~v-~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN--NVDMILLDN-M---SISEIKKAVDIVNGKS-V 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT--TCSEEEEES-C---CHHHHHHHHHHHTTSS-E
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc--CCCEEEECC-C---CHHHHHHHHHhhcCce-E
Confidence 566666644332233332 222 2 233 378899999998876 489999983 3 3333333333222344 4
Q ss_pred EEEeCCCCHHHHHHHHHhCCceee
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+..++.-+.+.+.+....|+|.+-
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 456777788888888899998764
No 188
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=84.27 E-value=0.81 Score=30.22 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
|+|+|........+.+.|+..|+.+..+...+..++.+.. ..+|.+++
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER-IDPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH-HCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh-CCCCEEEE
Confidence 8999988777778888999999888766654212223332 24898888
No 189
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=84.22 E-value=9.9 Score=27.56 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=54.4
Q ss_pred EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC--C--cceEEEEeCCCCHHHHHHHHHhCCceeec-
Q 048318 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG--I--KIKIVGVTSLNSEAEREAFMQAGLDLCHT- 126 (145)
Q Consensus 52 v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~--~~~iv~l~~~~~~~~~~~~~~~g~~~~l~- 126 (145)
++......+.++.+.. ..+|.|++|++..-.+..++.+.++... . ..++++=+...+...+..+++.|++.++.
T Consensus 46 ~~l~i~~p~~~e~a~~-~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP 124 (339)
T 1izc_A 46 VAHGIPSTFVTKVLAA-TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIP 124 (339)
T ss_dssp EEECSCCHHHHHHHHH-TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEET
T ss_pred EEEECCCHHHHHHHHh-CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeC
Confidence 3433344445555555 4699999999775555545555454321 1 14455545556677889999999998654
Q ss_pred CCCCHHHHHHHHHHH
Q 048318 127 KPLSVDKILPLMEDL 141 (145)
Q Consensus 127 kP~~~~~L~~~i~~~ 141 (145)
|--+.+++...+..+
T Consensus 125 ~V~saee~~~~~~~~ 139 (339)
T 1izc_A 125 HVETVEEVREFVKEM 139 (339)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 345577776665543
No 190
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=84.07 E-value=9.3 Score=27.29 Aligned_cols=106 Identities=19% Similarity=0.138 Sum_probs=54.6
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc--CCeEE-EEcCHHHHHHHHHcCCCccE--EEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL--GFKVE-VAENGKEAVDLFRSGAKFDI--VFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~--g~~v~-~~~~~~~al~~~~~~~~~dl--vl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
++++|.||.--..........+... +++++ .+....+..+.+.+ .+.+ +.- +-.+ .+.....+
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~--~~~~~~~~~-------~~~~---ll~~~~vD 84 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAK--MVGNPAVFD-------SYEE---LLESGLVD 84 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHH--HHSSCEEES-------CHHH---HHHSSCCS
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHH--HhCCCcccC-------CHHH---HhcCCCCC
Confidence 4678888888743333333344443 56765 44433333333322 1221 111 1112 22222234
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeecCCC--CHHHHHHHHHHH
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHTKPL--SVDKILPLMEDL 141 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~~~ 141 (145)
+-+|........+....++++|..=|+-||+ +.++..+.++.+
T Consensus 85 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 129 (340)
T 1zh8_A 85 AVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS 129 (340)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 4333333334567788889999888888996 566665555443
No 191
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=84.05 E-value=8.3 Score=26.53 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=51.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIV 102 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv 102 (145)
|+.+|||-....-+-..+...|.+.|+.|..+...++.+..+.. ...++..+-.++.+.+.. .+++.+.+....+-++
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 34678888889999999999999999998855544444554544 346777766666654443 4555555543344444
Q ss_pred E
Q 048318 103 G 103 (145)
Q Consensus 103 ~ 103 (145)
+
T Consensus 80 V 80 (247)
T 3ged_A 80 V 80 (247)
T ss_dssp E
T ss_pred E
Confidence 4
No 192
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=83.74 E-value=6.6 Score=28.04 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=7.1
Q ss_pred HHHHHHhCCceeecCC
Q 048318 113 REAFMQAGLDLCHTKP 128 (145)
Q Consensus 113 ~~~~~~~g~~~~l~kP 128 (145)
...++++|..-++-||
T Consensus 81 ~~~al~~gk~v~~EKP 96 (344)
T 3ezy_A 81 VIACAKAKKHVFCEKP 96 (344)
T ss_dssp HHHHHHTTCEEEEESC
T ss_pred HHHHHhcCCeEEEECC
Confidence 3344444444444444
No 193
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=83.68 E-value=9.8 Score=27.12 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=55.0
Q ss_pred HHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC----C---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 43 MALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP----V---MNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 43 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~----~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
..++..|..+. .+.+.+++...... ..|.++++-.-. + ...+++++.+++.. ++|+++-.+-.+.....
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~--GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~ 188 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL--GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL-RVPIIASGGFADGRGLV 188 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT--TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc--CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc-CCCEEEECCCCCHHHHH
Confidence 34445566655 56777777766554 589888853111 1 25678888887643 68988777777888888
Q ss_pred HHHHhCCceee
Q 048318 115 AFMQAGLDLCH 125 (145)
Q Consensus 115 ~~~~~g~~~~l 125 (145)
.++..|++.+.
T Consensus 189 ~al~~GAdgV~ 199 (328)
T 2gjl_A 189 AALALGADAIN 199 (328)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHcCCCEEE
Confidence 88999999875
No 194
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=83.63 E-value=4.4 Score=26.49 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=33.7
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCH---HHHHHHHHcCCCccEEEEe
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENG---KEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~al~~~~~~~~~dlvl~d 77 (145)
+|+|+|........+.+.|+..|+.+...... ++..+.+.....+++|+..
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECC
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECC
Confidence 68999977777788888999999888766644 4443433321234555553
No 195
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=83.54 E-value=10 Score=27.29 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=57.2
Q ss_pred eEEEEeCcHHHHHHHHHHHH----HcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 27 FALVVDDDCFIRTIHSMALK----SLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~----~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.+++-|++-...-.+...++ ..++. ...+.+.+++.+.+.. ..|+|.+|- ++..++-+..+...++++
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a--GaD~I~LDn----~~~~~l~~av~~l~~~v~ 277 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA--GADIIMLDN----FSLEMMREAVKINAGRAA 277 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT--TCSEEEEES----CCHHHHHHHHHHHTTSSE
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc--CCCEEEECC----CCHHHHHHHHHHhCCCCe
Confidence 46776666443322333332 23332 3488899999888875 489999985 233333232233334555
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceee
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+ ..++.-+.+.+.+....|+|.+-
T Consensus 278 i-eaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 278 L-ENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp E-EEESSCCHHHHHHHHTTTCSEEE
T ss_pred E-EEECCCCHHHHHHHHHcCCCEEE
Confidence 5 46777888889999999998774
No 196
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=83.48 E-value=8 Score=27.89 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
++++|.||.--..-...+..+... .+++++ .+....+..+.+........-..+ +-.+ .+.....++-+
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~------~~~~---ll~~~~~D~V~ 92 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYN------DYHD---LINDKDVEVVI 92 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEES------SHHH---HHHCTTCCEEE
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeC------CHHH---HhcCCCCCEEE
Confidence 467899999887666666555523 477776 343222222322221111111111 1122 22222234444
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCC--CHHHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPL--SVDKILPLMED 140 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~~ 140 (145)
|........+....++++|..-++-||+ +.++..+.++.
T Consensus 93 i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~ 133 (357)
T 3ec7_A 93 ITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEA 133 (357)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHH
Confidence 4334445666788888999888888996 45565555443
No 197
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=83.40 E-value=4.2 Score=28.80 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcCCcceEEEE--eCCCCHHHHHHHHHhCCceeec-----CCCCHHHHHHHHHHHHhc
Q 048318 84 NGIEATREIRSMGIKIKIVGV--TSLNSEAEREAFMQAGLDLCHT-----KPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 84 ~~~~~~~~l~~~~~~~~iv~l--~~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~~~ 144 (145)
..+++++++++. ..+|+|++ ++-.+.+....+++.|+|++++ +--++......+...++.
T Consensus 185 ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 185 VPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp SCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 457888888876 47888877 3335788999999999999963 445577777777766643
No 198
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=83.28 E-value=10 Score=27.11 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=53.6
Q ss_pred HHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCC-----CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHH
Q 048318 45 LKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEM-----PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ 118 (145)
Q Consensus 45 L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~-----~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~ 118 (145)
++..|+.+. .+.+.+++..... ...|.++++-.- .....+++++.+++.. ++|+++...-.+......++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEK--IGADAVIAEGMEAGGHIGKLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEEECCCCCCCCCCccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHH
Confidence 344566655 5667776655444 358988885321 1235678888887643 689988777777888999999
Q ss_pred hCCceee
Q 048318 119 AGLDLCH 125 (145)
Q Consensus 119 ~g~~~~l 125 (145)
.|++.+.
T Consensus 183 ~GAdgV~ 189 (332)
T 2z6i_A 183 LGAEAVQ 189 (332)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 9998874
No 199
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=83.13 E-value=7.1 Score=27.68 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=44.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 70 KFDIVFIDKEMPVMNGIEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~~~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
..++|.+|..- .....++++++++... .+|+++=..-.+.+.+..++..|||.+++-
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 46899999754 3345689999988653 688887667789999999999999999765
No 200
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=83.00 E-value=5.2 Score=30.76 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=46.1
Q ss_pred eEEEEeCcHHHHHHHHHHHHHc-CCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 27 FALVVDDDCFIRTIHSMALKSL-GFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~-g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
.++++|.++...+.+. .. |+.+.... +..+.++.+.- ...+.+++ . ..+......+...++.. ..++++-
T Consensus 152 ~vvvid~~~~~~~~~~----~~~~~~~i~Gd~~~~~~L~~a~i-~~a~~vi~-t-~~D~~n~~~~~~ar~~~-~~~iiar 223 (565)
T 4gx0_A 152 LFVVVTDNYDQALHLE----EQEGFKVVYGSPTDAHVLAGLRV-AAARSIIA-N-LSDPDNANLCLTVRSLC-QTPIIAV 223 (565)
T ss_dssp CEEEEESCHHHHHHHH----HSCSSEEEESCTTCHHHHHHTTG-GGCSEEEE-C-SCHHHHHHHHHHHHTTC-CCCEEEE
T ss_pred CEEEEECCHHHHHHHH----HhcCCeEEEeCCCCHHHHHhcCc-ccCCEEEE-e-CCcHHHHHHHHHHHHhc-CceEEEE
Confidence 4555555554433322 22 44444333 23333444332 34677776 2 22222334444556666 7787766
Q ss_pred eCCCCHHHHHHHHHhCCceeec
Q 048318 105 TSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+.. ..........|++..+.
T Consensus 224 ~~~--~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 224 VKE--PVHGELLRLAGANQVVP 243 (565)
T ss_dssp CSS--GGGHHHHHHHTCSEEEC
T ss_pred ECC--HHHHHHHHHcCCCEEEC
Confidence 543 34445567889987754
No 201
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=83.00 E-value=8.8 Score=26.94 Aligned_cols=85 Identities=11% Similarity=-0.010 Sum_probs=52.5
Q ss_pred eEEEE-eCcHH---HHHHHHHHHHHcCCeEE---EE----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVV-DDDCF---IRTIHSMALKSLGFKVE---VA----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii-~~~~~---~~~~l~~~L~~~g~~v~---~~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++ +++.. ..+.++..+++.|..+. .+ .+....+..+.. ..||+|++.. .+.....+++.+++.
T Consensus 137 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~dav~~~~--~~~~a~~~~~~~~~~ 213 (362)
T 3snr_A 137 TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA-ANPDAILVGA--SGTAAALPQTTLRER 213 (362)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-HCCSEEEEEC--CHHHHHHHHHHHHHT
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh-cCCCEEEEec--CcchHHHHHHHHHHc
Confidence 45444 44443 34566677778887754 22 245566666655 4699999854 234567788888887
Q ss_pred CCcceEEEEeCCCCHHHHH
Q 048318 96 GIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~ 114 (145)
....|++......+.....
T Consensus 214 g~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 214 GYNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp TCCSEEEECGGGCSHHHHH
T ss_pred CCCccEEeccCcCcHHHHH
Confidence 7788886555555554443
No 202
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=82.75 E-value=9.8 Score=26.39 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=49.8
Q ss_pred CCeEE--EEcCHHHHHHHHHcCCCccEEEE-ecCC---CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCc
Q 048318 49 GFKVE--VAENGKEAVDLFRSGAKFDIVFI-DKEM---PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD 122 (145)
Q Consensus 49 g~~v~--~~~~~~~al~~~~~~~~~dlvl~-d~~~---~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~ 122 (145)
|+.+. ++.+.+++.+.... ..|.|+. .-.. .+..+.+.++.+++. .++|+++-..-.+.+....++..|+|
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~--gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL--GVHAIMPGASPIGSGQGILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH--TCSCBEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh--CCCEEEECCcccCCCCCCCCHHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 76655 45566666555443 3576633 1101 112357788888874 47899887777788999999999999
Q ss_pred eeec
Q 048318 123 LCHT 126 (145)
Q Consensus 123 ~~l~ 126 (145)
.+++
T Consensus 203 gViV 206 (264)
T 1xm3_A 203 GVLL 206 (264)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9864
No 203
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=82.33 E-value=7.3 Score=26.66 Aligned_cols=56 Identities=5% Similarity=0.063 Sum_probs=39.4
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-------CHHHHHHHHHcCCCccEEEEecCC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-------NGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
|+++|||......+...+...|.+.|++|.... +.+...+.+.. ..+|+|+--...
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~-~~~d~vi~~a~~ 66 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE-IRPHIIIHCAAY 66 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH-HCCSEEEECCCC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh-cCCCEEEECCcc
Confidence 345899999999999999999988899988653 33433344443 258998865543
No 204
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=82.16 E-value=5.3 Score=28.25 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.+.++..++..+..+|.+-.. +.+...++++.|+|-++...++++++...++.+-
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 456777777766667776555 5688899999999998888999999888887653
No 205
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=82.05 E-value=11 Score=26.65 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=53.1
Q ss_pred EEEEeCcHHHHHHHHHHH---HHcC--CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 28 ALVVDDDCFIRTIHSMAL---KSLG--FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L---~~~g--~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
|||-|+|-...-.+...+ +..+ ..+. .+.+.+|+.+.+.. ..|+|.+|- + +-.++-+..+....++++
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a--GaD~I~LDn-~---~~~~l~~av~~~~~~v~i 245 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA--KADIVMLDN-F---SGEDIDIAVSIARGKVAL 245 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT--TCSEEEEES-C---CHHHHHHHHHHHTTTCEE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc--CCCEEEEcC-C---CHHHHHHHHHhhcCCceE
Confidence 566666543332233322 2222 2333 78899999988875 489999985 2 222322222322335544
Q ss_pred EEEeCCCCHHHHHHHHHhCCceee
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
..++.-+.+.+.+....|+|.+-
T Consensus 246 -eaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 246 -EVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp -EEESSCCTTTHHHHHTTTCSEEE
T ss_pred -EEECCCCHHHHHHHHHcCCCEEE
Confidence 46777777788888899998774
No 206
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=81.98 E-value=11 Score=26.74 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=42.4
Q ss_pred CHHHHHHHHHcCCCccEEEEecCC--CCCC---HHHHHHHHHhcCCcceEEEEeCCC------------C-----HHHHH
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEM--PVMN---GIEATREIRSMGIKIKIVGVTSLN------------S-----EAERE 114 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~--~~~~---~~~~~~~l~~~~~~~~iv~l~~~~------------~-----~~~~~ 114 (145)
+...+++.+......+++++.... +..+ .+..+..+++..+..||++-++.. . .....
T Consensus 149 ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~ 228 (285)
T 3sz8_A 149 QLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLAR 228 (285)
T ss_dssp GTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHH
Confidence 345677777654467899987543 2111 234455566665568887644443 2 45667
Q ss_pred HHHHhCCceee
Q 048318 115 AFMQAGLDLCH 125 (145)
Q Consensus 115 ~~~~~g~~~~l 125 (145)
.|...||++++
T Consensus 229 AAvA~GA~gl~ 239 (285)
T 3sz8_A 229 AGIAVGIAGLF 239 (285)
T ss_dssp HHHHHCCSEEE
T ss_pred HHHHhCCCEEE
Confidence 88899999754
No 207
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=81.73 E-value=7.1 Score=25.86 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=42.6
Q ss_pred CccEEEEecCCCCCC-------HHHHHHHHHhcC----CcceEEEEeCCCCHHHHHHHHHhCCceee-----cCCCCHHH
Q 048318 70 KFDIVFIDKEMPVMN-------GIEATREIRSMG----IKIKIVGVTSLNSEAEREAFMQAGLDLCH-----TKPLSVDK 133 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~-------~~~~~~~l~~~~----~~~~iv~l~~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~ 133 (145)
..|.|+++...++.+ +.+-++.+++.. .+.|+++ +..-+.+...++.+.|++.++ .+..++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV-DGGVDNKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE-ECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 368887765444322 234455555432 2567765 444445666678888999885 34556666
Q ss_pred HHHHHHHHH
Q 048318 134 ILPLMEDLM 142 (145)
Q Consensus 134 L~~~i~~~~ 142 (145)
-.+.+.+.+
T Consensus 210 a~~~~~~~~ 218 (220)
T 2fli_A 210 QVQTLRTAL 218 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
No 208
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=81.57 E-value=9.4 Score=27.00 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=46.6
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
+|.+++-.+.-. .+-...++..|+..+. .+|.+-+. +.+...++++.|+|.+...+++++++...++.+
T Consensus 163 ~d~vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~--tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l 234 (285)
T 1o4u_A 163 SGCVMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVE--NLEDALRAVEAGADIVMLDNLSPEEVKDISRRI 234 (285)
T ss_dssp --CEEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cccEEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 455555422111 2335567777776655 56665443 578889999999999989999999998887765
No 209
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=81.45 E-value=9.8 Score=25.53 Aligned_cols=89 Identities=9% Similarity=0.011 Sum_probs=57.2
Q ss_pred CCeEE-EEcCHHHHHHHHHcCCCccEE---EEecCCC----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhC
Q 048318 49 GFKVE-VAENGKEAVDLFRSGAKFDIV---FIDKEMP----VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAG 120 (145)
Q Consensus 49 g~~v~-~~~~~~~al~~~~~~~~~dlv---l~d~~~~----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g 120 (145)
+..+. .+.+.+++...... ..|.| +....-. ....++.++.+++. ++|+++.++-.+.+....++..|
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~--Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~G 208 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQA--GIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLG 208 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHT--TCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTC
T ss_pred CCeEEEeCCCHHHHHHHHHc--CCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCC
Confidence 55544 56788887766654 47887 3333211 12346778888765 78998877777799999999999
Q ss_pred CceeecCC--CCHHHHHHHHHHH
Q 048318 121 LDLCHTKP--LSVDKILPLMEDL 141 (145)
Q Consensus 121 ~~~~l~kP--~~~~~L~~~i~~~ 141 (145)
++.++.-- +.+.+....+.+.
T Consensus 209 ad~v~vGsal~~p~~~~~~l~~~ 231 (234)
T 1yxy_A 209 VAGIVVGGAITRPKEIAERFIEA 231 (234)
T ss_dssp CSEEEECHHHHCHHHHHHHHHHH
T ss_pred CCEEEEchHHhChHHHHHHHHHH
Confidence 99886431 1144444444443
No 210
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=81.39 E-value=9.9 Score=25.56 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=56.6
Q ss_pred HHHHcCCeEE-EE--cCHHHHHHHHHcCC--CccEEEEecCCCCC-------CHHHHHHHHHhcCCcceEEEEeCCCCHH
Q 048318 44 ALKSLGFKVE-VA--ENGKEAVDLFRSGA--KFDIVFIDKEMPVM-------NGIEATREIRSMGIKIKIVGVTSLNSEA 111 (145)
Q Consensus 44 ~L~~~g~~v~-~~--~~~~~al~~~~~~~--~~dlvl~d~~~~~~-------~~~~~~~~l~~~~~~~~iv~l~~~~~~~ 111 (145)
.++..|..+. .+ .+..+.++.+.. . ..|.++++...|+. .+++.++++++..++.|+++-. .-+.+
T Consensus 108 ~i~~~g~~igv~~~p~t~~e~~~~~~~-~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~G-GI~~~ 185 (228)
T 1h1y_A 108 SIKAKGMRPGVSLRPGTPVEEVFPLVE-AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDG-GLGPS 185 (228)
T ss_dssp HHHHTTCEEEEEECTTSCGGGGHHHHH-SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEES-SCSTT
T ss_pred HHHHcCCCEEEEEeCCCCHHHHHHHHh-cCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEEC-CcCHH
Confidence 3444555544 33 233344444433 2 47999887665542 3466677777765577876544 44446
Q ss_pred HHHHHHHhCCceeec-----CCCCHHHHHHHHHHHH
Q 048318 112 EREAFMQAGLDLCHT-----KPLSVDKILPLMEDLM 142 (145)
Q Consensus 112 ~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~ 142 (145)
....+...|+|.++. +.-++.+-.+.+++.+
T Consensus 186 ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~ 221 (228)
T 1h1y_A 186 TIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSV 221 (228)
T ss_dssp THHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHH
Confidence 677788889999863 3335666665555544
No 211
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=81.32 E-value=7.2 Score=28.02 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=47.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCC-----CHHHHHHHHHhc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVM-----NGIEATREIRSM 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~-----~~~~~~~~l~~~ 95 (145)
..+|..+|-++...+..++.+... +-.+. ...++.+.+..... ..||+|++|...+.. ...++++.+++.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~-~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~ 189 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP-ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRG 189 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT-TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC-CCCCEEEECCCCccccchhhhHHHHHHHHHHh
Confidence 457899999999999998887532 22344 56777776654323 469999999755432 125777777653
No 212
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=81.00 E-value=12 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHhCCceeecCCC--CHHHHHHHH
Q 048318 108 NSEAEREAFMQAGLDLCHTKPL--SVDKILPLM 138 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i 138 (145)
........++++|..-++-||+ +.++..+.+
T Consensus 75 ~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~ 107 (331)
T 4hkt_A 75 THADLIERFARAGKAIFCEKPIDLDAERVRACL 107 (331)
T ss_dssp GHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHH
Confidence 3445566666667666666763 344444433
No 213
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=80.98 E-value=13 Score=26.60 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=55.7
Q ss_pred HHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHH
Q 048318 43 MALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 43 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~ 116 (145)
..++..|..+. .+.+.+++...... ..|.|+++-.-. ....++++..+++.. ++|+++-++-.+......+
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~--GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA--GADAVIAEGMESGGHIGEVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc--CCCEEEEECCCCCccCCCccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHH
Confidence 34445566655 56777777665543 589888853211 235678888887643 6888877777778889999
Q ss_pred HHhCCceee
Q 048318 117 MQAGLDLCH 125 (145)
Q Consensus 117 ~~~g~~~~l 125 (145)
+..|++.+.
T Consensus 195 l~~GA~gV~ 203 (326)
T 3bo9_A 195 FALGAEAVQ 203 (326)
T ss_dssp HHHTCSEEE
T ss_pred HHhCCCEEE
Confidence 999999875
No 214
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=80.75 E-value=13 Score=26.74 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=54.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
++++|.||.--..-...+...|... +++++ .+. +.+.+-..... +.+-..+ +-.+ .+.....++-
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~~~~---ll~~~~~D~V 93 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER---FGGEPVE------GYPA---LLERDDVDAV 93 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH---HCSEEEE------SHHH---HHTCTTCSEE
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH---cCCCCcC------CHHH---HhcCCCCCEE
Confidence 3578999998876663344444444 77776 443 33333333322 2221111 1111 2222223443
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHHH
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLMED 140 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~ 140 (145)
+|........+....++++|..-++-||+. .++..+.++.
T Consensus 94 ~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~ 135 (350)
T 3rc1_A 94 YVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAV 135 (350)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 333333345666778888888888888864 4555554443
No 215
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=80.73 E-value=11 Score=25.74 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCccEEEE-ecCC---CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC------
Q 048318 58 GKEAVDLFRSGAKFDIVFI-DKEM---PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK------ 127 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~-d~~~---~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k------ 127 (145)
..+..+.+.. ...+.|++ +..- .....+++++.+++.. ++|+++-++-.+.+....++..|+++++.-
T Consensus 158 ~~e~~~~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 158 LRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp HHHHHHHHHH-TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred HHHHHHHHHH-cCCCEEEEEeecCCCCcCCCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 4455454544 45776665 2221 1122478888888753 789998888888888888899999987533
Q ss_pred CCCHHHHHHH
Q 048318 128 PLSVDKILPL 137 (145)
Q Consensus 128 P~~~~~L~~~ 137 (145)
|.+..++...
T Consensus 236 ~~~~~~~~~~ 245 (266)
T 2w6r_A 236 EIDMRELKEY 245 (266)
T ss_dssp ----------
T ss_pred CCCHHHHHHH
Confidence 5455555443
No 216
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=80.33 E-value=9.8 Score=24.82 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=45.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCC-eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGF-KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~-~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
+|.-+|-++...+..+..++..|+ .+. ...+..+.+.. ....||+|++|.-.......++++.+.+
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 789999999999999999988775 444 44566554322 1246999999865333445567777765
No 217
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=80.14 E-value=3.7 Score=27.36 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 60 EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 60 ~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+++.+.+ ..||++ + -||+.- ..+++.+++.. .+|+|+=+--.+.+.+..++++||+..-.
T Consensus 118 ~~~~~i~~-~~PD~i--E-iLPGi~-p~iI~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 118 KGVALIQK-VQPDCI--E-LLPGII-PEQVQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHH-HCCSEE--E-EECTTC-HHHHHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHhh-cCCCEE--E-ECCchh-HHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 35666665 579977 2 246543 37888888753 67888655557999999999999998754
No 218
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=79.96 E-value=13 Score=26.15 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=50.4
Q ss_pred eEEEEeC-cHH---HHHHHHHHHHHcCCeEE---EE----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVVDD-DCF---IRTIHSMALKSLGFKVE---VA----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii~~-~~~---~~~~l~~~L~~~g~~v~---~~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++.+ +.. ..+.++..+++.|..+. .. .+....+..+.. ..||+|++... +.....+++.+++.
T Consensus 140 ~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~~ 216 (356)
T 3ipc_A 140 KVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKE-AGVSIIYWGGL--HTEAGLIIRQAADQ 216 (356)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHH-TTCCEEEEESC--HHHHHHHHHHHHHH
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEccC--chHHHHHHHHHHHC
Confidence 4544443 433 33456666777776542 22 356666777766 57999997543 33456788888887
Q ss_pred CCcceEEEEeCCCCHHHH
Q 048318 96 GIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~ 113 (145)
....|++......+....
T Consensus 217 g~~~~~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 217 GLKAKLVSGDGIVSNELA 234 (356)
T ss_dssp TCCCEEEECGGGCSHHHH
T ss_pred CCCCcEEEeccccCHHHH
Confidence 777887654444454443
No 219
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=79.88 E-value=1.7 Score=29.92 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHcCCCccEEEEecCCC--CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 61 AVDLFRSGAKFDIVFIDKEMP--VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 61 al~~~~~~~~~dlvl~d~~~~--~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.++.+.. ...|+|++.-+.. ..+..++++++|+ ..+|+++++...+ .+..|+|.|+.-
T Consensus 28 ~l~~~~~-~GtDaI~vGgs~gvt~~~~~~~v~~ik~--~~~Piil~p~~~~------~~~~gaD~il~p 87 (235)
T 3w01_A 28 DLDAICM-SQTDAIMIGGTDDVTEDNVIHLMSKIRR--YPLPLVLEISNIE------SVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHT-SSCSEEEECCSSCCCHHHHHHHHHHHTT--SCSCEEEECCCST------TCCTTCSEEEEE
T ss_pred HHHHHHH-cCCCEEEECCcCCcCHHHHHHHHHHhcC--cCCCEEEecCCHH------HhhcCCCEEEEc
Confidence 4444444 4689999997642 2345677788876 5889998887531 235699999764
No 220
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=79.82 E-value=2.9 Score=27.70 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=6.4
Q ss_pred HHHHHHhCCceeec
Q 048318 113 REAFMQAGLDLCHT 126 (145)
Q Consensus 113 ~~~~~~~g~~~~l~ 126 (145)
...+.+.|++.++.
T Consensus 70 ~~~~~~~Gad~v~v 83 (211)
T 3f4w_A 70 SQLLFDAGADYVTV 83 (211)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHhcCCCEEEE
Confidence 44444444444443
No 221
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=79.65 E-value=8.7 Score=27.76 Aligned_cols=105 Identities=16% Similarity=0.051 Sum_probs=55.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+++|-||.-...-...+...+...+++++ .+....+..+.+.......-+.- +-.++ +.. +.+-+|+
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~-------~~~~l---l~~--~~vD~V~ 93 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIA-------TAEEI---LED--ENIGLIV 93 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEES-------CHHHH---HTC--TTCCEEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccC-------CHHHH---hcC--CCCCEEE
Confidence 57899998765443444555556788877 44433333333322111001111 12222 222 2233344
Q ss_pred EeCC--CCHHHHHHHHHhCCceeecCCC--CHHHHHHHHHHH
Q 048318 104 VTSL--NSEAEREAFMQAGLDLCHTKPL--SVDKILPLMEDL 141 (145)
Q Consensus 104 l~~~--~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~~~ 141 (145)
++.+ ...+....++++|..-|+-||+ +.++..+.++.+
T Consensus 94 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 94 SAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 4333 4666788899999998999996 456665555443
No 222
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=79.64 E-value=3.4 Score=28.58 Aligned_cols=59 Identities=12% Similarity=-0.058 Sum_probs=39.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCC
Q 048318 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~ 129 (145)
..||++++--=.+...|-.-.+.+-+. ..+|.|++++..... ..++++....+|+.-+.
T Consensus 63 ~~pDfvI~isPN~a~PGP~~ARE~l~~-~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 63 FEPDFIVYGGPNPAAPGPSKAREMLAD-SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HCCSEEEEECSCTTSHHHHHHHHHHHT-SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred cCCCEEEEECCCCCCCCchHHHHHHHh-CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 579988887656667787777666532 378888898887666 44556555556654433
No 223
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=79.63 E-value=16 Score=26.96 Aligned_cols=78 Identities=14% Similarity=-0.012 Sum_probs=50.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe---EE-EEcCHHHHHH-HHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK---VE-VAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~-~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.+|..+|-++...+.++..++.+|.. +. ...|..+.+. .. . ..||+|++|. ++ ...++++...+...+--
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~-~~fD~V~lDP--~g-~~~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-G-FGFDYVDLDP--FG-TPVPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-S-SCEEEEEECC--SS-CCHHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-C-CCCcEEEECC--Cc-CHHHHHHHHHHHhCCCC
Confidence 46899999999999999999988863 44 4556666554 33 2 4699999997 22 22345554433211223
Q ss_pred EEEEeCCC
Q 048318 101 IVGVTSLN 108 (145)
Q Consensus 101 iv~l~~~~ 108 (145)
++.++...
T Consensus 153 ll~~t~t~ 160 (392)
T 3axs_A 153 ILSLTATD 160 (392)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 56666544
No 224
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=79.53 E-value=6.4 Score=27.85 Aligned_cols=69 Identities=10% Similarity=-0.064 Sum_probs=46.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHc-CCCccEEEEecCCCC-CCHHHHHHHHHh
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRS-GAKFDIVFIDKEMPV-MNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~~dlvl~d~~~~~-~~~~~~~~~l~~ 94 (145)
-++.++|.++.....+++.++..+-.-+...|+..++..+.. ...+|+||+|---.. .+...+++.+.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 468999999999999999887643223356688888876643 125899999974432 234445555543
No 225
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=79.52 E-value=6.6 Score=29.22 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCCC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVMN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+.++.+.+ ..+|+|++|....... -.+.++.+++.. .+|+++ ..-.+.+....+.++|+|.+..
T Consensus 146 ~e~~~~lve-aGvdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE-AGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH-HTCSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 344444444 3599999987654322 257788888755 667764 3335678888999999999976
No 226
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=79.51 E-value=12 Score=25.34 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCccEEEE-ecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec------C
Q 048318 58 GKEAVDLFRSGAKFDIVFI-DKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT------K 127 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~-d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~------k 127 (145)
..+..+.+.. ..++.+++ +.+-.+ ...++.++++++.. ++|+++-++-.+.+....++..|++.++. .
T Consensus 153 ~~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHH-TTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHH-CCCCEEEEEeccCCCCCCCCCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 4455555544 45775554 433211 12478888888754 78998877777878888889999998753 3
Q ss_pred CCCHHHHHHHHH
Q 048318 128 PLSVDKILPLME 139 (145)
Q Consensus 128 P~~~~~L~~~i~ 139 (145)
|+++++....++
T Consensus 231 ~~~~~~~~~~l~ 242 (253)
T 1thf_D 231 EIDVRELKEYLK 242 (253)
T ss_dssp CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 567777766654
No 227
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=79.40 E-value=12 Score=26.60 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCccEEEEecCC------CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHH
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEM------PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVD 132 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~------~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~ 132 (145)
++..+.+.. .|++++-... .+.-+..+++.+.. .+|+|+ +.... ..+....| .+++..|-+.+
T Consensus 264 ~~~~~~~~~---ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~---G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 264 QDMINTLAA---ADIFAMPARTRGGGLDVEGLGIVYLEAQAC---GVPVIA-GTSGG---APETVTPA-TGLVVEGSDVD 332 (394)
T ss_dssp HHHHHHHHH---CSEEEECCCCBGGGTBCCSSCHHHHHHHHT---TCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHH
T ss_pred HHHHHHHHh---CCEEEecCccccccccccccCcHHHHHHHc---CCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHH
Confidence 555555443 4777664332 13345556666553 567765 33322 22334567 88999999999
Q ss_pred HHHHHHHHHHh
Q 048318 133 KILPLMEDLMK 143 (145)
Q Consensus 133 ~L~~~i~~~~~ 143 (145)
++...+.++++
T Consensus 333 ~l~~~i~~l~~ 343 (394)
T 3okp_A 333 KLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988875
No 228
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=79.29 E-value=10 Score=24.84 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=42.2
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..++...... ..|++-+... ...|.+.++.++...+++|+++.++-. .+....++..|++.+..
T Consensus 113 t~~e~~~a~~~--Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL--GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT--TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc--CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 45565555443 4676654321 113677888888765578888765554 56778889999998753
No 229
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=79.27 E-value=14 Score=25.83 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred EEEEeC--cHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEe-cCCCCCC-HHHHHHHHHhc-CCcceE
Q 048318 28 ALVVDD--DCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFID-KEMPVMN-GIEATREIRSM-GIKIKI 101 (145)
Q Consensus 28 iLii~~--~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d-~~~~~~~-~~~~~~~l~~~-~~~~~i 101 (145)
||++-. +......+...-...|.++. .+.+.+|.-+.+.. .+++|=++ -++.... ..+....+... +.+..+
T Consensus 130 ILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~--~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~ 207 (258)
T 4a29_A 130 VLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRI--GARFIGIMSRDFETGEINKENQRKLISMIPSNVVK 207 (258)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT--TCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEE
T ss_pred eehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC--CCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEE
Confidence 444433 23344555555667898854 89999998777764 46776554 2333221 23444455544 346666
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
|.=++-.+.+.+..+...|++++|+.
T Consensus 208 VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 208 VAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp EEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred EEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 66677789999999999999999864
No 230
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=78.98 E-value=13 Score=25.28 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=46.2
Q ss_pred ccEEEEecCCCCCC-------HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec-----CCCCHHHHHHHH
Q 048318 71 FDIVFIDKEMPVMN-------GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT-----KPLSVDKILPLM 138 (145)
Q Consensus 71 ~dlvl~d~~~~~~~-------~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i 138 (145)
.|.|++-.-.|+.. .++-++++|+..++.+|. +...-+.+....+.++|||.++. +.-++.+-...+
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~-VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l 213 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIE-VDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLL 213 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEE-EESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHH
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEE-EeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 68887755455433 455577777766666665 55666677788899999998763 434565555555
Q ss_pred HHHH
Q 048318 139 EDLM 142 (145)
Q Consensus 139 ~~~~ 142 (145)
+..+
T Consensus 214 ~~~~ 217 (228)
T 3ovp_A 214 RNVC 217 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 231
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=78.74 E-value=15 Score=26.19 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=52.9
Q ss_pred ceEEEEeCcHHH----HHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVVDDDCFI----RTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~~----~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.+|.++.++... ...++..+++.|..+.. + .+....+..+.. ..||+|++... +.....+++.+++
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~dav~~~~~--~~~a~~~~~~~~~ 220 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQ-AGVEYVVHQNV--AGPVANILKDAKR 220 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHH-TTCCEEEEESC--HHHHHHHHHHHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHh-cCCCEEEEecC--cchHHHHHHHHHH
Confidence 355555443332 34667777778877642 1 255566776666 57999997542 3456778888888
Q ss_pred cCCcceEEEEeCCCCHHHHH
Q 048318 95 MGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~~~ 114 (145)
.....|++......+.....
T Consensus 221 ~g~~~~~~~~~~~~~~~~~~ 240 (392)
T 3lkb_A 221 LGLKMRHLGAHYTGGPDLIA 240 (392)
T ss_dssp TTCCCEEEECGGGCSHHHHH
T ss_pred cCCCceEEEecCcccHHHHH
Confidence 77777876544334444443
No 232
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=78.63 E-value=15 Score=28.01 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCCC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVMN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..+.+.+ ..+|+|.++....... .++.++.+++..++.|+++ ..-.+.+....+.++|+|.+.+
T Consensus 257 ~~~a~~~~~-aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 257 KYRLDLLTQ-AGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHcCCCEEEE
Confidence 344444444 4689999987654332 3588899988776778775 2335677888999999998855
No 233
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=78.63 E-value=12 Score=25.28 Aligned_cols=82 Identities=9% Similarity=-0.155 Sum_probs=48.6
Q ss_pred cCCceEEEEeCc--HHHHHHHHHHHHHcCCeEEEEc---CHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcC
Q 048318 23 NLRLFALVVDDD--CFIRTIHSMALKSLGFKVEVAE---NGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMG 96 (145)
Q Consensus 23 ~~~~~iLii~~~--~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~ 96 (145)
..+.+|||..-. .-+-..+...|.+.|+.|..+. ...+.++.+.. ....+.++..++.+.+. ..+++.+.+..
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAA-EFGSELVFPCDVADDAQIDALFASLKTHW 90 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH-HTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 345678888866 7888888888888899987552 33444444433 12234444444445444 34666666655
Q ss_pred CcceEEEEe
Q 048318 97 IKIKIVGVT 105 (145)
Q Consensus 97 ~~~~iv~l~ 105 (145)
..+-+++-.
T Consensus 91 g~id~lv~n 99 (271)
T 3ek2_A 91 DSLDGLVHS 99 (271)
T ss_dssp SCEEEEEEC
T ss_pred CCCCEEEEC
Confidence 455555543
No 234
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=78.51 E-value=2.5 Score=29.09 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.++++.+.+ ...|+|.+..+..- .+-+++++.+|+ .++|+|+++...+. ...|+|+++.-
T Consensus 23 ~~~~~~l~~-~GaD~IelG~S~g~t~~~~~~~v~~ir~--~~~Pivl~~y~~n~------i~~gvDg~iip 84 (234)
T 2f6u_A 23 DEIIKAVAD-SGTDAVMISGTQNVTYEKARTLIEKVSQ--YGLPIVVEPSDPSN------VVYDVDYLFVP 84 (234)
T ss_dssp HHHHHHHHT-TTCSEEEECCCTTCCHHHHHHHHHHHTT--SCCCEEECCSSCCC------CCCCSSEEEEE
T ss_pred HHHHHHHHH-cCCCEEEECCCCCCCHHHHHHHHHHhcC--CCCCEEEecCCcch------hhcCCCEEEEc
Confidence 344555555 46899999874221 134667777776 58999998877322 16799999865
No 235
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=78.39 E-value=7.1 Score=22.09 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=31.3
Q ss_pred ceEEEEeCCCCHHH----HHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 99 IKIVGVTSLNSEAE----REAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 99 ~~iv~l~~~~~~~~----~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.|++++....+... ..++.+.|+..-+.|..++++|-.+++..+.
T Consensus 52 kplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 52 KPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp SCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 35555555544433 3455677888888999999999999887654
No 236
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=77.95 E-value=3.3 Score=27.40 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=33.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
..+|+|+|-..-....+.+.|+..|+++....+.++. .. +|.|++
T Consensus 2 ~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~---~D~lil 46 (211)
T 4gud_A 2 TQNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA---ADKLFL 46 (211)
T ss_dssp -CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH---CSEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC---CCEEEE
Confidence 3468999866555677888999999999988876642 22 687777
No 237
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=77.67 E-value=12 Score=28.38 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+....+.. ..+|.+.++...... ..++.++.+++..+..|+++ ....+.+....+.+.|+|.+.+
T Consensus 239 ~~~a~~l~~-aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 239 MERVEKLVK-AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEEE
Confidence 444555545 468999998754322 26788899998776778764 5556777888899999998875
No 238
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=77.48 E-value=11 Score=23.95 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=67.5
Q ss_pred CceEEEEeCcH-HHHHHHHHHHHHcCCeEEE-Ec--CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 25 RLFALVVDDDC-FIRTIHSMALKSLGFKVEV-AE--NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 25 ~~~iLii~~~~-~~~~~l~~~L~~~g~~v~~-~~--~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
+.+++++.+.+ .....++..++..+ .+.. .. +.++....+. ..|++++-... +.-+..+++.+.. .+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~---~ad~~l~ps~~-e~~~~~~~Ea~a~---G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG---SVDFVIIPSYF-EPFGLVALEAMCL---GAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT---TCSEEEECCSC-CSSCHHHHHHHHT---TCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH---HCCEEEECCCC-CCccHHHHHHHHC---CCC
Confidence 46677777654 25567777777776 4444 33 4445555553 36888875433 3345666666654 567
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
+|+ +.. ....+.. .|..+++..|-+.+++...+.++++
T Consensus 142 vI~-~~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIA-SAV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEE-ESC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEE-eCC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 664 332 2233444 6788899999999999999988875
No 239
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=77.08 E-value=14 Score=24.74 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=51.9
Q ss_pred CHHHHHHHHHcCCCccEEEEe-cCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec------
Q 048318 57 NGKEAVDLFRSGAKFDIVFID-KEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT------ 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d-~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~------ 126 (145)
+..+..+.+.+ ...|.|++- ....+ ...++.++.+++.. ++|+++-++-.+.+....++..|++.++.
T Consensus 155 ~~~e~~~~~~~-~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEE-LGAGEILLTSIDRDGTGLGYDVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHH-HTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHh-CCCCEEEEecccCCCCcCcCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 34454444444 347877653 33211 22567888888754 78898777777777888888999998853
Q ss_pred CCCCHHHHHHHHH
Q 048318 127 KPLSVDKILPLME 139 (145)
Q Consensus 127 kP~~~~~L~~~i~ 139 (145)
.+.+.+++...++
T Consensus 233 ~~~~~~~~~~~l~ 245 (253)
T 1h5y_A 233 RVLSIAQVKRYLK 245 (253)
T ss_dssp TSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3566677666654
No 240
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=77.04 E-value=15 Score=24.97 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=50.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEE-EEcCHHHHHHHHH-----cCCCccEEEEecCCCCCCHHHHHHHHHh-c
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVE-VAENGKEAVDLFR-----SGAKFDIVFIDKEMPVMNGIEATREIRS-M 95 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~ 95 (145)
..++..+|-++...+..+..++..|+ .+. ...+..+.+..+. . ..||+|++|... .+-..+++.+.. .
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~-~~fD~V~~d~~~--~~~~~~l~~~~~~L 180 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH-GSYDFIFVDADK--DNYLNYHKRLIDLV 180 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT-TCBSEEEECSCS--TTHHHHHHHHHHHB
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC-CCEEEEEEcCch--HHHHHHHHHHHHhC
Confidence 35789999999999999999988776 354 5667777665542 2 469999999653 234556666554 3
Q ss_pred CCcceE
Q 048318 96 GIKIKI 101 (145)
Q Consensus 96 ~~~~~i 101 (145)
.+.-.+
T Consensus 181 kpGG~l 186 (247)
T 1sui_A 181 KVGGVI 186 (247)
T ss_dssp CTTCCE
T ss_pred CCCeEE
Confidence 444333
No 241
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=76.99 E-value=17 Score=25.60 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=60.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+.+++++++.+. ..++...+..|. .+......++....+.. .|++++-.. .+.-+..+++.+.. .+|+|
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~---ad~~v~ps~-~e~~~~~~~Ea~a~---G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA---ADLLLHPAY-QEAAGIVLLEAITA---GLPVL 298 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH---CSEEEECCS-CCSSCHHHHHHHHH---TCCEE
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh---cCEEEeccc-cCCcccHHHHHHHC---CCCEE
Confidence 345666666442 445555554442 24433333334444433 477666432 23445666666654 56777
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecC-CCCHHHHHHHHHHHHh
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTK-PLSVDKILPLMEDLMK 143 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~k-P~~~~~L~~~i~~~~~ 143 (145)
+....... +.+..|..+++.. |.+.+++...+.++++
T Consensus 299 ~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 54333322 3345567788887 8999999999988875
No 242
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=76.85 E-value=8.9 Score=26.36 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCHH---HHHHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNSEA---EREAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~~~---~~~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
+++.++.+++. .++|+++++.. +.. ....+...|++.++.-....+++.+.+.
T Consensus 82 ~~~~i~~ir~~-~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~ 137 (262)
T 1rd5_A 82 VLEMLREVTPE-LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWS 137 (262)
T ss_dssp HHHHHHHHGGG-CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHH
T ss_pred HHHHHHHHHhc-CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHH
Confidence 45677777765 46788776421 211 1233888999988875444444444443
No 243
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=76.79 E-value=17 Score=25.55 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred eEEEE-eCcHH---HHHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVV-DDDCF---IRTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii-~~~~~---~~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++ .++.. ..+.++..+++.|..+.. + .+....+..+.. ..||+|++... ......+++.+++.
T Consensus 141 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~~--~~~a~~~~~~~~~~ 217 (358)
T 3hut_A 141 SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED-EAPQAIYLAMA--YEDAAPFLRALRAR 217 (358)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEESC--HHHHHHHHHHHHHT
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEccC--chHHHHHHHHHHHc
Confidence 45444 44443 334556667777877542 2 355666666665 46999998643 12466788888887
Q ss_pred CCcceEEEEeCCCCHHHHH
Q 048318 96 GIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~ 114 (145)
...+|++............
T Consensus 218 g~~~p~~~~~~~~~~~~~~ 236 (358)
T 3hut_A 218 GSALPVYGSSALYSPKFID 236 (358)
T ss_dssp TCCCCEEECGGGCSHHHHH
T ss_pred CCCCcEEecCcccCHHHHH
Confidence 7788877554444554443
No 244
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=76.76 E-value=4.3 Score=28.62 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCCC---CC--HHHHHHHHHh--cCCcceEEEEeCCC
Q 048318 38 RTIHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMPV---MN--GIEATREIRS--MGIKIKIVGVTSLN 108 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~~---~~--~~~~~~~l~~--~~~~~~iv~l~~~~ 108 (145)
....-..|+..|+.+. -+.++...+..+.. .++|.|=+|-.+-. .+ ...+++.+.. +...+.+| .-+-.
T Consensus 165 ~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~vv-AEGVE 242 (294)
T 2r6o_A 165 VRTCLDALRARGVRLALDDFGTGYSSLSYLSQ-LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVV-AEGIE 242 (294)
T ss_dssp HHHHHHHHHHHTCEEEEEEETSSCBCHHHHHH-SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEE-ECCCC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCchhHHHHHh-CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEEE-EecCC
Confidence 3344456677898865 45566666777776 68999999954321 12 3344444433 12244444 45556
Q ss_pred CHHHHHHHHHhCCce----eecCCCCHHHHHHHHHH
Q 048318 109 SEAEREAFMQAGLDL----CHTKPLSVDKILPLMED 140 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i~~ 140 (145)
+.+....+.+.|++. |+.||...+++...+.+
T Consensus 243 t~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 243 TAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp SHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 777788888888764 47889999998877654
No 245
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=76.75 E-value=14 Score=25.76 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=58.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEE--cCHHHHHHHHHcCCCccEEEEecC---------CCCCCHHHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVA--ENGKEAVDLFRSGAKFDIVFIDKE---------MPVMNGIEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~--~~~~~al~~~~~~~~~dlvl~d~~---------~~~~~~~~~~~~l~ 93 (145)
+.+.+++++.+ ....++...+..|-.+... .+..+..+.+.. .|++++-.. ..+.-+.-+++.+.
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~---adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS---AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH---CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh---CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 34556666543 2233333333333223322 233344444443 577666433 13344566666665
Q ss_pred hcCCcceEEEEeCCCCHHHHHHHHHh--CCceeecCCCCHHHHHHHHHHHH
Q 048318 94 SMGIKIKIVGVTSLNSEAEREAFMQA--GLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 94 ~~~~~~~iv~l~~~~~~~~~~~~~~~--g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
. .+|+|+ +.... ..+.... |..+++..| +.+++...+.+++
T Consensus 264 ~---G~PvI~-s~~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 264 S---GTPVVG-TGNGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp T---TCCEEE-CCTTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred c---CCCEEE-cCCCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 4 567764 33322 4455666 788899999 9999999987654
No 246
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=76.70 E-value=12 Score=25.38 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=42.9
Q ss_pred CceEEEEeCcH------HHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDC------FIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~------~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..+|++|+-.. .......+.|+..|+++......++..+.+.+ .|.|++ |+++...+.+.+++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~---ad~I~l----pGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK---AEIIIV----GGGNTFQLLKESRE 99 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH---CSEEEE----CCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc---CCEEEE----CCCcHHHHHHHHHH
Confidence 45788886542 66778888999999988877433333344443 588887 56777777777665
No 247
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=76.58 E-value=21 Score=26.53 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=63.6
Q ss_pred CceEEEEeC----cHHHHHHHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCC-----------CCCCHHH
Q 048318 25 RLFALVVDD----DCFIRTIHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEM-----------PVMNGIE 87 (145)
Q Consensus 25 ~~~iLii~~----~~~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~-----------~~~~~~~ 87 (145)
+..+++++- .....+.++..-+..+..+. .+.+.+++...... ..|.|.+...- .+...+.
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a--GAD~I~vG~g~Gs~~~tr~~~g~g~p~~~ 233 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN--GADGIKVGIGPGSICTTRIVAGVGVPQIT 233 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT--TCSEEEECC---------CCSCBCCCHHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc--CCCEEEEeCCCCcCcccccccccchhHHH
Confidence 345666632 22334444443333465554 57888888877764 58999884210 0134566
Q ss_pred HHHHHHhc--CCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 88 ATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 88 ~~~~l~~~--~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+..+.+. ...+|+|.-..-.+...+..++..||+...
T Consensus 234 al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 234 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 66666542 247899887787889999999999999875
No 248
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=76.47 E-value=15 Score=24.70 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=47.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc----CCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS----GAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~----~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..++..+|-++...+..+..++..|+. +. ...+..+.+..+.. ...||+|++|... .+-..+++.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~--~~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADK--PNYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCch--HHHHHHHHHHHH
Confidence 357899999999999999999888763 54 56677776665521 1469999999642 233456666554
No 249
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=76.45 E-value=17 Score=25.31 Aligned_cols=69 Identities=12% Similarity=0.190 Sum_probs=46.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-----CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC--H---HHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-----GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN--G---IEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-----g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~--~---~~~~~~l~ 93 (145)
..++..+|-++...+..+..+... +-.+. ...+..+.+... . ..||+|++|...+... . .++++.++
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~ 179 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-T-NTYDVIIVDSSDPIGPAETLFNQNFYEKIY 179 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-C-SCEEEEEEECCCTTTGGGGGSSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-C-CCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 357899999999999999887643 12343 566777665443 3 4699999997554322 1 47777776
Q ss_pred hc
Q 048318 94 SM 95 (145)
Q Consensus 94 ~~ 95 (145)
+.
T Consensus 180 ~~ 181 (283)
T 2i7c_A 180 NA 181 (283)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 250
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=76.41 E-value=12 Score=23.82 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=51.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC-eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHh---cCCc
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF-KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRS---MGIK 98 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~-~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~---~~~~ 98 (145)
.+|.-+|-++...+..+..++..|. .+. ...+..+....... ..||+|++|.-... .+-..+++.+.+ ..|.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT-SPVDLVLADPPYNVDSADVDAILAALGTNGWTREG 146 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS-SCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC-CCccEEEECCCCCcchhhHHHHHHHHHhcCccCCC
Confidence 3689999999999999999887775 344 56677766544333 57999999854433 223456666655 2444
Q ss_pred ceEEEE
Q 048318 99 IKIVGV 104 (145)
Q Consensus 99 ~~iv~l 104 (145)
-.+++-
T Consensus 147 G~l~~~ 152 (189)
T 3p9n_A 147 TVAVVE 152 (189)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 444443
No 251
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=76.35 E-value=8.5 Score=27.22 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 86 ~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
...++..|+..++ .+|.+ +. .+.++..++...|+|.+...|++++.+...++.+
T Consensus 183 ~~av~~ar~~~~~~~~IgV-ev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEV-EV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEE-EE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4456777776554 45554 33 4577788899999999989999999888776653
No 252
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=76.31 E-value=20 Score=26.07 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=53.4
Q ss_pred HHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec-C----CCC-----------CCHHHHHHHHHhcCCcceEEEEeCCC
Q 048318 46 KSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK-E----MPV-----------MNGIEATREIRSMGIKIKIVGVTSLN 108 (145)
Q Consensus 46 ~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~-~----~~~-----------~~~~~~~~~l~~~~~~~~iv~l~~~~ 108 (145)
+..|..+. .+.+.+++...... ..|.|+++- . ... ...+++++.+++.. ++|+++...-.
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~--GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~ 218 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA--GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIM 218 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT--TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCC
T ss_pred HHCCCeEEEECCCHHHHHHHHHc--CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEECCCC
Confidence 34566655 66788887665543 589998842 1 110 23388888887643 68988777776
Q ss_pred CHHHHHHHHHhCCceee
Q 048318 109 SEAEREAFMQAGLDLCH 125 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l 125 (145)
+......++..|++.+.
T Consensus 219 ~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 219 RGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp SHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 88999999999998874
No 253
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=76.26 E-value=6.8 Score=25.67 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=48.6
Q ss_pred CceEEEEeCcHHH----------HHHHHHHHHHcCCeEEEE--------------------cCHHHHHHHH----HcCCC
Q 048318 25 RLFALVVDDDCFI----------RTIHSMALKSLGFKVEVA--------------------ENGKEAVDLF----RSGAK 70 (145)
Q Consensus 25 ~~~iLii~~~~~~----------~~~l~~~L~~~g~~v~~~--------------------~~~~~al~~~----~~~~~ 70 (145)
+.+|+++.|.-.. ...+...|...|+.+... .+..+.+..+ .. ..
T Consensus 5 ~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~-~~ 83 (215)
T 2vpt_A 5 TIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNT-HN 83 (215)
T ss_dssp EEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHH-HC
T ss_pred ceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhc-cC
Confidence 4678888887543 356777777667655432 1223333332 22 36
Q ss_pred ccEEEEecCCCCC---------CHHHHHHHHHhcCCcceEEEEeCC
Q 048318 71 FDIVFIDKEMPVM---------NGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 71 ~dlvl~d~~~~~~---------~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
||+|++.+...|. +-..+++.+++..|..+|++++..
T Consensus 84 pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~p~~~ii~~~~~ 129 (215)
T 2vpt_A 84 PDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKPNVTLFVADYY 129 (215)
T ss_dssp CSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCEEEEEccccccCCCCChhHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 8999987632221 123466777777788888877544
No 254
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=76.17 E-value=20 Score=25.99 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=60.8
Q ss_pred CceEEEEeCc---HHHHHHHHHHHHHcCC--eEEEEc--CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC
Q 048318 25 RLFALVVDDD---CFIRTIHSMALKSLGF--KVEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97 (145)
Q Consensus 25 ~~~iLii~~~---~~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~ 97 (145)
+.+++++.+. ......++...+..|. .+.... +.++....+.. .|++++-. ..+.-+.-+++.+..
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~---adv~v~ps-~~e~~~~~~~Eama~--- 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA---ADIVAVPS-FNESFGLVAMEAQAS--- 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH---CSEEEECC-SCCSSCHHHHHHHHT---
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh---CCEEEECc-cccCCchHHHHHHHc---
Confidence 3455666651 2334555555555442 233322 33555555543 47766543 233345556666553
Q ss_pred cceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 98 KIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+|+|+ +.... ..+....|..+++..|.+.+++...|.++++
T Consensus 349 G~PvI~-~~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIA-ARVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEE-ESCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEe-cCCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 567765 43332 2334556778899999999999999988875
No 255
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=76.13 E-value=10 Score=24.98 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=41.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc---CCCccEEEEecCC
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS---GAKFDIVFIDKEM 80 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~---~~~~dlvl~d~~~ 80 (145)
..+|..+|-++...+..+..++..|.. +. ...+..+.+..+.. ...||+|++|...
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~ 144 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWK 144 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCc
Confidence 457899999999999999999887753 54 56677666554431 0369999999744
No 256
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=76.10 E-value=21 Score=26.23 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=46.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcC---C------eEE-EEcCHHHHHHHHH-cCCCccEEEEecCC-CC------CCHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLG---F------KVE-VAENGKEAVDLFR-SGAKFDIVFIDKEM-PV------MNGIE 87 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g---~------~v~-~~~~~~~al~~~~-~~~~~dlvl~d~~~-~~------~~~~~ 87 (145)
.+|..+|-++...+..+..+...+ + .+. ...|+.+.++... ....||+|++|..- |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 578999999999999998875321 1 244 6678888887642 22579999999754 32 13457
Q ss_pred HHHHH
Q 048318 88 ATREI 92 (145)
Q Consensus 88 ~~~~l 92 (145)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 257
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=75.99 E-value=10 Score=25.72 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=44.7
Q ss_pred CHHHHHHHHHcCCCccEEEEec---CC-CC-CCHHHHHHHHHhcCCcceEE--EEeCCCCHHHHHHHHHhCCceeecCCC
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDK---EM-PV-MNGIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~---~~-~~-~~~~~~~~~l~~~~~~~~iv--~l~~~~~~~~~~~~~~~g~~~~l~kP~ 129 (145)
+..+.++.+.+ ...|++=+|. +. |. .-|.+.++.+|+.. +.|+. +++.. .......+.+.|+|.+.....
T Consensus 18 ~l~~~i~~~~~-~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~-~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDE-AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHH-TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC-CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHH-cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc-CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 33444444443 2345554443 11 12 23678899998754 33333 44432 344678889999999966554
Q ss_pred --CHHHHHHHHHHH
Q 048318 130 --SVDKILPLMEDL 141 (145)
Q Consensus 130 --~~~~L~~~i~~~ 141 (145)
..+...+.++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 334444555444
No 258
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=75.97 E-value=18 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=16.5
Q ss_pred CHHHHHHHHHhCCceeecCCCC--HHHHHH
Q 048318 109 SEAEREAFMQAGLDLCHTKPLS--VDKILP 136 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~~--~~~L~~ 136 (145)
..+....+++.|..-++-||+. .++..+
T Consensus 84 h~~~~~~al~~G~~v~~eKp~~~~~~~~~~ 113 (346)
T 3cea_A 84 HPEMTIYAMNAGLNVFCEKPLGLDFNEVDE 113 (346)
T ss_dssp HHHHHHHHHHTTCEEEECSCCCSCHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEcCCCCCCHHHHHH
Confidence 4455666777776666667754 444433
No 259
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=75.91 E-value=18 Score=25.50 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=52.4
Q ss_pred ceEEEE-e-CcHH---HHHHHHHHHHHcCCeEEEE------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVV-D-DDCF---IRTIHSMALKSLGFKVEVA------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii-~-~~~~---~~~~l~~~L~~~g~~v~~~------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.+|.++ + ++.. ....++..+++.|..+... .+....+..+.. ..||+|++... +.+...+++.+++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~ 226 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS-FNPDAIYITGY--YPEIALISRQARQ 226 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH-TCCSEEEECSC--HHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh-cCCCEEEEccc--hhHHHHHHHHHHH
Confidence 356666 3 3433 2355667777788776521 355666777766 57999999432 3456678888888
Q ss_pred cCCcceEEEEeCCCCHHHH
Q 048318 95 MGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 95 ~~~~~~iv~l~~~~~~~~~ 113 (145)
.....|++...........
T Consensus 227 ~g~~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 227 LGFTGYILAGDGADAPELI 245 (366)
T ss_dssp TTCCSEEEECGGGCSTHHH
T ss_pred cCCCceEEeeCCcCCHHHH
Confidence 7777787654343444433
No 260
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=75.86 E-value=8.6 Score=26.10 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=47.6
Q ss_pred CHHHHHHHHHcCCCccEEEEec---CC-CCC-CHHHHHHHHHhcC-CcceEEE--EeCCCCHHHHHHHHHhCCceeecCC
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDK---EM-PVM-NGIEATREIRSMG-IKIKIVG--VTSLNSEAEREAFMQAGLDLCHTKP 128 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~---~~-~~~-~~~~~~~~l~~~~-~~~~iv~--l~~~~~~~~~~~~~~~g~~~~l~kP 128 (145)
+..+.++.+.. ...|.+-+|. +. |.. -|.++++.+|+.. +..|+.+ +.. ........+.++|+|.+....
T Consensus 18 ~l~~~i~~l~~-~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~-~p~~~i~~~~~aGad~itvH~ 95 (228)
T 3ovp_A 18 NLGAECLRMLD-SGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVS-KPEQWVKPMAVAGANQYTFHL 95 (228)
T ss_dssp GHHHHHHHHHH-TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECS-CGGGGHHHHHHHTCSEEEEEG
T ss_pred hHHHHHHHHHH-cCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeC-CHHHHHHHHHHcCCCEEEEcc
Confidence 44566666655 3466666654 21 222 3788889998763 4555443 232 223457778889998887664
Q ss_pred CCHHHHHHHHHHH
Q 048318 129 LSVDKILPLMEDL 141 (145)
Q Consensus 129 ~~~~~L~~~i~~~ 141 (145)
.....+.+.++.+
T Consensus 96 Ea~~~~~~~i~~i 108 (228)
T 3ovp_A 96 EATENPGALIKDI 108 (228)
T ss_dssp GGCSCHHHHHHHH
T ss_pred CCchhHHHHHHHH
Confidence 3333444444433
No 261
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=75.85 E-value=4.9 Score=26.88 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=60.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC----eEE-EEcCHHHH--------------HHH-------HHcCCCccEEEEec
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF----KVE-VAENGKEA--------------VDL-------FRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~----~v~-~~~~~~~a--------------l~~-------~~~~~~~dlvl~d~ 78 (145)
.-+|.-+|.|+...+..+..++..|+ .+. ...+..+. +.. .....+||+||+|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 35789999999999999999998886 344 33332211 111 11114699999997
Q ss_pred CCCCCCHHHHHH-HHHhcCCcceEEEEeC---CCCHHHHHHHHHh----C-CceeecC--CCCHHHHHHHHHH
Q 048318 79 EMPVMNGIEATR-EIRSMGIKIKIVGVTS---LNSEAEREAFMQA----G-LDLCHTK--PLSVDKILPLMED 140 (145)
Q Consensus 79 ~~~~~~~~~~~~-~l~~~~~~~~iv~l~~---~~~~~~~~~~~~~----g-~~~~l~k--P~~~~~L~~~i~~ 140 (145)
.- ...... .++...+.. +|++-+ ........+.+.. | ..-|-.+ +++.+.|.+.+..
T Consensus 131 ~k----~~~~~~~~l~~l~~GG-~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~ 198 (202)
T 3cvo_A 131 RF----RVGCALATAFSITRPV-TLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRT 198 (202)
T ss_dssp SS----HHHHHHHHHHHCSSCE-EEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHH
T ss_pred CC----chhHHHHHHHhcCCCe-EEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHH
Confidence 42 223222 233334443 333332 3344445555542 2 2233343 4566666666554
No 262
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=75.80 E-value=5.9 Score=28.05 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=44.7
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+.+++.+.+.. ..|+|++|- ++...-.+..+.++...+.+++. .++.-+.+.+.+....|+|.+-
T Consensus 199 EV~tleea~eA~~a--GaD~I~LDn-~~~e~l~~av~~l~~~~~~v~ie-ASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 199 EVENLEDALRAVEA--GADIVMLDN-LSPEEVKDISRRIKDINPNVIVE-VSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp EESSHHHHHHHHHT--TCSEEEEES-CCHHHHHHHHHHHHHHCTTSEEE-EEECCCTTTGGGGCCTTCCEEE
T ss_pred EeCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHHhhccCCCceEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 67889999988875 489999996 32222223444554434566665 4555666667777888888764
No 263
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=75.78 E-value=9.3 Score=24.97 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=21.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEc
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAE 56 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~ 56 (145)
+|||......+-..+...|.+.|+.|....
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVV 31 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 577777777777777777777777777443
No 264
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=75.72 E-value=13 Score=25.48 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=48.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv 102 (145)
+.++||.....-+-..+...|.+.|+.|.... +.+.+.+.... ...++.++..++.+.+.. .+++.+.+....+-++
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD-LGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL 105 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence 45789999999999999999989999988554 44433333332 234566666655554443 3555555443333344
Q ss_pred EE
Q 048318 103 GV 104 (145)
Q Consensus 103 ~l 104 (145)
+-
T Consensus 106 vn 107 (266)
T 3grp_A 106 VN 107 (266)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 265
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=75.54 E-value=7.3 Score=28.43 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee------cC-CCCHHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH------TK-PLSVDKILPLMEDLM 142 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l------~k-P~~~~~L~~~i~~~~ 142 (145)
+++++++++..+.+|||...+-.+.+...+++..||+.+. .. |.-..++..-+.+.+
T Consensus 265 ~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m 328 (354)
T 4ef8_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVM 328 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHH
Confidence 7788888877668999999998999999999999998774 23 555556655555544
No 266
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=75.48 E-value=22 Score=26.37 Aligned_cols=95 Identities=9% Similarity=0.037 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCe--EEEEc--CHHHHHHHHHcCCCc----cEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCC
Q 048318 38 RTIHSMALKSLGFK--VEVAE--NGKEAVDLFRSGAKF----DIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNS 109 (145)
Q Consensus 38 ~~~l~~~L~~~g~~--v~~~~--~~~~al~~~~~~~~~----dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~ 109 (145)
...++...+..|.. |.... +.++....+.. . |++++--. .+.-+.-+++.+.. .+|+|+ +...
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~---a~~~~dv~v~pS~-~Eg~~~~~lEAma~---G~PvI~-s~~~- 391 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY---LASKGSVFALTSF-YEPFGLAPVEAMAS---GLPAVV-TRNG- 391 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH---HHHTTCEEEECCS-CBCCCSHHHHHHHT---TCCEEE-ESSB-
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh---cCcCCCEEEECcc-cCCCCcHHHHHHHc---CCCEEE-ecCC-
Confidence 66777777776642 44333 34555555543 5 88776432 33345556666554 567764 3322
Q ss_pred HHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 110 EAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 110 ~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
...+....|..+++..|-+.+++...|.++++
T Consensus 392 --g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 392 --GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp --HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred --CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 23455677888899999999999999988764
No 267
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=75.38 E-value=12 Score=26.46 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=46.3
Q ss_pred eEEE-EeCcHH---HHHHHHHHHHHcCCeEE---EE----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALV-VDDDCF---IRTIHSMALKSLGFKVE---VA----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLi-i~~~~~---~~~~l~~~L~~~g~~v~---~~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.+ .+++.. ....++..+++.|..+. .+ .+....+..+.. ..||+|++... +.....+++.+++.
T Consensus 143 ~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~~ 219 (364)
T 3lop_A 143 RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA-ADVQAIFLGAT--AEPAAQFVRQYRAR 219 (364)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH-SCCSEEEEESC--HHHHHHHHHHHHHT
T ss_pred eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh-CCCCEEEEecC--cHHHHHHHHHHHHc
Confidence 3444 444443 33456666777776542 22 256666777766 57999998542 33567788888887
Q ss_pred CCcceEEEE
Q 048318 96 GIKIKIVGV 104 (145)
Q Consensus 96 ~~~~~iv~l 104 (145)
....|++..
T Consensus 220 g~~~~~i~~ 228 (364)
T 3lop_A 220 GGEAQLLGL 228 (364)
T ss_dssp TCCCEEEEC
T ss_pred CCCCeEEEe
Confidence 777786543
No 268
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=75.29 E-value=16 Score=24.65 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCeEEEEcCH------HHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 38 RTIHSMALKSLGFKVEVAENG------KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~~------~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
...++..+++.||.+..+... .+.++.+.. ..+|.+|+-.... .+.++.+++. .+|+|++..
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~----~~~~~~l~~~--~iPvV~i~~ 93 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGS-RGFDGLILQSFSN----PQTVQEILHQ--QMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT-TTCSEEEEESSCC----HHHHHHHHTT--SSCEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCc----HHHHHHHHHC--CCCEEEEec
Confidence 344444555667776644322 123444444 4577666643322 4444555432 456665543
No 269
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=75.13 E-value=16 Score=24.57 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=52.9
Q ss_pred CHHHHHHHHHcCCCccEEEE-ecCC---CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh-----C-Cceee-
Q 048318 57 NGKEAVDLFRSGAKFDIVFI-DKEM---PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA-----G-LDLCH- 125 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~-d~~~---~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~-----g-~~~~l- 125 (145)
+..+..+.+.+ ..++.+++ +..- .....++.++.+++.. ++|+|+-.+-.+.+....+++. | +++++
T Consensus 145 ~~~e~~~~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~v 222 (241)
T 1qo2_A 145 DPVSLLKRLKE-YGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp CHHHHHHHHHT-TTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CHHHHHHHHHh-CCCCEEEEEeecccccCCcCCHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEe
Confidence 45565555554 45785555 3211 1123478888888753 6799988888888889998888 9 99875
Q ss_pred -----cCCCCHHHHHHH
Q 048318 126 -----TKPLSVDKILPL 137 (145)
Q Consensus 126 -----~kP~~~~~L~~~ 137 (145)
..+++..++.+.
T Consensus 223 gsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 223 GRAFLEGILTVEVMKRY 239 (241)
T ss_dssp CHHHHTTSSCHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHH
Confidence 347777777654
No 270
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=74.99 E-value=19 Score=25.64 Aligned_cols=105 Identities=15% Similarity=0.051 Sum_probs=56.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcce
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIK 100 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 100 (145)
.++||-||.--..-.......++.. +++++ .+. +.+.+-+...+ ....-+.-|+ -+ .+.....+.-
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~-~g~~~~y~d~-------~e---ll~~~~iDaV 90 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR-FSVPHAFGSY-------EE---MLASDVIDAV 90 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH-HTCSEEESSH-------HH---HHHCSSCSEE
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH-cCCCeeeCCH-------HH---HhcCCCCCEE
Confidence 3578889988776655555556554 67776 444 33333333322 1111122221 12 2232223443
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHH
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLME 139 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~ 139 (145)
+|........+....++++|-.=|+-||+. .++..+.++
T Consensus 91 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 131 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIA 131 (350)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHH
T ss_pred EEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHH
Confidence 333333346677888899999888999964 455444443
No 271
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=74.97 E-value=13 Score=23.78 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=61.1
Q ss_pred cCCceEEEEeCcH-----H-HHHHHHHHHHHcCCeEEE---Ec------------C----HHHHHHHHHcCCCccEEEEe
Q 048318 23 NLRLFALVVDDDC-----F-IRTIHSMALKSLGFKVEV---AE------------N----GKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 23 ~~~~~iLii~~~~-----~-~~~~l~~~L~~~g~~v~~---~~------------~----~~~al~~~~~~~~~dlvl~d 77 (145)
+++++|-+...-. . ..+.+...|+..| .+.. .. + ....++.+.. .|+|+.+
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~---aD~vva~ 84 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ---ADVVVAE 84 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH---CSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh---CCEEEEE
Confidence 3456787774443 1 4577888888888 6631 00 1 1222344443 6999998
Q ss_pred cCCCC-CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCce---eecCCCCHHHHHHHHHHHHhc
Q 048318 78 KEMPV-MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL---CHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 78 ~~~~~-~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~---~l~kP~~~~~L~~~i~~~~~~ 144 (145)
..-++ +-++++--.. ....||+.+....... ...++-.|... +-...++.+++...+...++.
T Consensus 85 ~~~~d~Gt~~EiGyA~---algKPVi~l~~~~~~~-~~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 85 VTQPSLGVGYELGRAV---ALGKPILCLFRPQSGR-VLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp CSSCCHHHHHHHHHHH---HTCSSEEEEECTTTTC-CCCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHH---HCCCEEEEEEcCCCCC-cchhhhcccCccceeEEEecCHHHHHHHHHHHHHh
Confidence 76222 1234443332 2367888886554211 11122234332 333345888888888877753
No 272
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=74.89 E-value=20 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhCCceeecCCC--CHHHHHHHHH
Q 048318 108 NSEAEREAFMQAGLDLCHTKPL--SVDKILPLME 139 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~ 139 (145)
.+.+....++++|..=++-||+ +.++..+.++
T Consensus 78 ~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~ 111 (334)
T 3ohs_X 78 QHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVT 111 (334)
T ss_dssp GHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 3445556666666666666665 3444444443
No 273
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=74.80 E-value=17 Score=24.61 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCe-EEEEcCHHHHHHHH---HcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHH
Q 048318 39 TIHSMALKSLGFK-VEVAENGKEAVDLF---RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 39 ~~l~~~L~~~g~~-v~~~~~~~~al~~~---~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~ 114 (145)
..+...|...+.. |....+.+++++.+ .. ...+++=+.+. ..++.+.++.+++..++..+- .......+...
T Consensus 17 ~~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~-gGv~~iel~~k--~~~~~~~i~~l~~~~~~~~ig-agtvl~~d~~~ 92 (225)
T 1mxs_A 17 ARIDAICEKARILPVITIAREEDILPLADALAA-GGIRTLEVTLR--SQHGLKAIQVLREQRPELCVG-AGTVLDRSMFA 92 (225)
T ss_dssp HHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHH-TTCCEEEEESS--STHHHHHHHHHHHHCTTSEEE-EECCCSHHHHH
T ss_pred HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEecC--CccHHHHHHHHHHhCcccEEe-eCeEeeHHHHH
Confidence 3344455555633 44455655554443 33 34676666543 456778888887766654432 23345667888
Q ss_pred HHHHhCCceeecCCCCH
Q 048318 115 AFMQAGLDLCHTKPLSV 131 (145)
Q Consensus 115 ~~~~~g~~~~l~kP~~~ 131 (145)
.++..|++..+.-..+.
T Consensus 93 ~A~~aGAd~v~~p~~d~ 109 (225)
T 1mxs_A 93 AVEAAGAQFVVTPGITE 109 (225)
T ss_dssp HHHHHTCSSEECSSCCH
T ss_pred HHHHCCCCEEEeCCCCH
Confidence 89999998886544443
No 274
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=74.77 E-value=17 Score=24.49 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=47.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv~ 103 (145)
+.++||.....-+-..+...|.+.|+.|..+....+..+.+.. ...++..+..++.+.+. .++++.+.+....+-+++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv 80 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hcccCCeEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3568899999889999999998899998855544444444433 23444455555544433 345555554433344444
Q ss_pred E
Q 048318 104 V 104 (145)
Q Consensus 104 l 104 (145)
-
T Consensus 81 ~ 81 (247)
T 3dii_A 81 N 81 (247)
T ss_dssp E
T ss_pred E
Confidence 3
No 275
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=74.60 E-value=16 Score=24.27 Aligned_cols=88 Identities=8% Similarity=0.041 Sum_probs=59.7
Q ss_pred cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC-CC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCcee
Q 048318 48 LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV-MN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLC 124 (145)
Q Consensus 48 ~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~ 124 (145)
.|..+. -+.+..++.+.... ..|.+-+ .|. .- |.+.++.++...+++|++.+..-. .+...+++..|++.+
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~--Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~v 176 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL--GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLA 176 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT--TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSC
T ss_pred hCCCEEecCCCHHHHHHHHHC--CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEE
Confidence 454433 46788888777654 4787766 443 23 789999999877789998765544 567888999998876
Q ss_pred e-----cCCCCHHHHHHHHHHHH
Q 048318 125 H-----TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 125 l-----~kP~~~~~L~~~i~~~~ 142 (145)
. .+ -+++++..+.+++.
T Consensus 177 avgSai~~-~d~~~i~~~a~~~~ 198 (207)
T 2yw3_A 177 VGGSWLLQ-GNLEAVRAKVRAAK 198 (207)
T ss_dssp EEESGGGS-SCHHHHHHHHHHHH
T ss_pred EEehhhhC-CCHHHHHHHHHHHH
Confidence 4 33 45555666555543
No 276
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=74.26 E-value=14 Score=23.31 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=61.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHH--Hc----CCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 25 RLFALVVDDDCFIRTIHSMALK--SL----GFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~--~~----g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
+.+++++.+.+.. ..++..++ .. ++...-..+.++....+.. .|++++-.. .+.-+..+++.+.. .
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adi~v~ps~-~e~~~~~~~Eama~---G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR---CKGLLCTAK-DEDFGLTPIEAMAS---G 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH---CSEEEECCS-SCCSCHHHHHHHHT---T
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh---CCEEEeCCC-cCCCChHHHHHHHc---C
Confidence 4566677654432 23334443 22 2223323344555555544 587776322 23345566666554 5
Q ss_pred ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 99 IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 99 ~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
+|+|+ +.. ....+....|..+++. +.+.+++...|.+++++
T Consensus 122 ~PvI~-~~~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIA-VNE---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEE-ESS---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEE-eCC---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 67765 332 3344556667788888 99999999999998854
No 277
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=74.24 E-value=28 Score=26.92 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=58.3
Q ss_pred EEcCHHHHHHHHHcCCC---ccEEEEecCCCC---------CCHHHHHHHHHhc-----CCcceEEEEeCCCCHHHHHHH
Q 048318 54 VAENGKEAVDLFRSGAK---FDIVFIDKEMPV---------MNGIEATREIRSM-----GIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~---~dlvl~d~~~~~---------~~~~~~~~~l~~~-----~~~~~iv~l~~~~~~~~~~~~ 116 (145)
.+.+.+++.+.... . .|.|.+..-.+. .-|++.++.+++. ...+|++++..-. .+.....
T Consensus 114 S~ht~eea~~A~~~--G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~-~~ni~~v 190 (540)
T 3nl6_A 114 SVGFPEEVDELSKM--GPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLH-PDNIERV 190 (540)
T ss_dssp EECSHHHHHHHHHT--CC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCC-TTTHHHH
T ss_pred ECCCHHHHHHHHHc--CCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCC-HHHHHHH
Confidence 67789998876654 4 899999765543 1256777766653 2478999988774 4445556
Q ss_pred HH--------hCCcee-----ecCCCCHHHHHHHHHHHHhc
Q 048318 117 MQ--------AGLDLC-----HTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 117 ~~--------~g~~~~-----l~kP~~~~~L~~~i~~~~~~ 144 (145)
+. .|++.+ |.+.-++.+-.+.+.+.+++
T Consensus 191 ~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~ 231 (540)
T 3nl6_A 191 LYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDK 231 (540)
T ss_dssp HHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred HHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence 65 677776 34555677777777666543
No 278
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=74.21 E-value=6.7 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=27.2
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE 56 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~ 56 (145)
-++++|||......+-..+...|.+.|++|..+.
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~ 52 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMV 52 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence 3467899999999999888888888899988544
No 279
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=74.11 E-value=17 Score=24.36 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=55.5
Q ss_pred HHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCC--------C--CC-HHHHHHHHHhcCCcceEEEEeCCCC
Q 048318 42 SMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMP--------V--MN-GIEATREIRSMGIKIKIVGVTSLNS 109 (145)
Q Consensus 42 ~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~--------~--~~-~~~~~~~l~~~~~~~~iv~l~~~~~ 109 (145)
.......|..+. ++.+..+..+. .. ..++++-+.-... . .+ .....+.++.....+|+++-++-..
T Consensus 104 ~~~a~~~Gl~~iv~v~~~~e~~~~-~~-~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~ 181 (219)
T 2h6r_A 104 INKCKNLGLETIVCTNNINTSKAV-AA-LSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISK 181 (219)
T ss_dssp HHHHHHHTCEEEEEESSSHHHHHH-TT-TCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCS
T ss_pred HHHHHHCCCeEEEEeCCchHHHHH-Hh-CCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCc
Confidence 333445687755 66666664433 33 3456665554332 0 11 2345556666544678776555566
Q ss_pred HHHHHHHHHhCCceee-----cCCCCHHHHHHHH
Q 048318 110 EAEREAFMQAGLDLCH-----TKPLSVDKILPLM 138 (145)
Q Consensus 110 ~~~~~~~~~~g~~~~l-----~kP~~~~~L~~~i 138 (145)
.+....+...|+|+++ .|+-++.+..+.+
T Consensus 182 ~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l 215 (219)
T 2h6r_A 182 GEDVKAALDLGAEGVLLASGVVKAKNVEEAIREL 215 (219)
T ss_dssp HHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHH
Confidence 7888888899999997 4566666655544
No 280
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=74.04 E-value=21 Score=25.37 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=9.2
Q ss_pred HHHHHHHHHhCCceeecCC
Q 048318 110 EAEREAFMQAGLDLCHTKP 128 (145)
Q Consensus 110 ~~~~~~~~~~g~~~~l~kP 128 (145)
.+....++++|..-++-||
T Consensus 80 ~~~~~~al~~Gk~vl~EKP 98 (344)
T 3mz0_A 80 ESSVLKAIKAQKYVFCEKP 98 (344)
T ss_dssp HHHHHHHHHTTCEEEECSC
T ss_pred HHHHHHHHHCCCcEEEcCC
Confidence 3344445555554444555
No 281
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=73.95 E-value=21 Score=25.25 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=52.8
Q ss_pred eEEEE-eCcHH---HHHHHHHHHHHcCCeEE---EE----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVV-DDDCF---IRTIHSMALKSLGFKVE---VA----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii-~~~~~---~~~~l~~~L~~~g~~v~---~~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++ +++.. ....++..+++.|..+. .. .+....+..+.. ..||+|++... ......+++.+++.
T Consensus 161 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~-~~~dav~~~~~--~~~a~~~~~~~~~~ 237 (386)
T 3sg0_A 161 KVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIA-TKPDAVFIASA--GTPAVLPQKALRER 237 (386)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHH-TCCSEEEEECC--SGGGHHHHHHHHHT
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHh-cCCCEEEEecC--cchHHHHHHHHHHc
Confidence 45444 44443 34556667777787653 22 355666776766 57999988643 34577888999887
Q ss_pred CCcceEEEEeCCCCHHHHH
Q 048318 96 GIKIKIVGVTSLNSEAERE 114 (145)
Q Consensus 96 ~~~~~iv~l~~~~~~~~~~ 114 (145)
....|++......+.....
T Consensus 238 g~~~~~~~~~~~~~~~~~~ 256 (386)
T 3sg0_A 238 GFKGAIYQTHGVATEEFIK 256 (386)
T ss_dssp TCCSEEECCGGGCSHHHHH
T ss_pred CCCCcEEeccccCCHHHHH
Confidence 7777776554445554443
No 282
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=73.90 E-value=2.9 Score=28.07 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCcc-EEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHH----HHHHHHHhCCcee--ecCCCC
Q 048318 58 GKEAVDLFRSGAKFD-IVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEA----EREAFMQAGLDLC--HTKPLS 130 (145)
Q Consensus 58 ~~~al~~~~~~~~~d-lvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~----~~~~~~~~g~~~~--l~kP~~ 130 (145)
+.+.++.+++ ..++ -+++|+++-+ .+..+++.+.+.+.+. +.+-...... ....+.+.|.... +..|.+
T Consensus 46 G~~~i~~lr~-~~~~~~i~ld~~l~d-~p~~~~~~~~~aGad~--i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T 121 (218)
T 3jr2_A 46 GMKAVSTLRH-NHPNHILVCDMKTTD-GGAILSRMAFEAGADW--ITVSAAAHIATIAACKKVADELNGEIQIEIYGNWT 121 (218)
T ss_dssp TTHHHHHHHH-HCTTSEEEEEEEECS-CHHHHHHHHHHHTCSE--EEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCC
T ss_pred CHHHHHHHHH-hCCCCcEEEEEeecc-cHHHHHHHHHhcCCCE--EEEecCCCHHHHHHHHHHHHHhCCccceeeeecCC
Confidence 3445566654 2233 4667887763 3445666666665443 3333333322 2233345566554 556767
Q ss_pred HHHHHH
Q 048318 131 VDKILP 136 (145)
Q Consensus 131 ~~~L~~ 136 (145)
++++..
T Consensus 122 ~~~~~~ 127 (218)
T 3jr2_A 122 MQDAKA 127 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 283
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=73.86 E-value=17 Score=26.55 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 59 KEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+..+.+.+ ..+|+|.+|....+...+ +.++.+++.. .+|+++ ..-.+.+....+.+.|+|.+.+
T Consensus 107 ~e~a~~l~e-aGad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVE-AGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-cCcCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEE-ccCCCHHHHHHHHHcCcCEEEE
No 284
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=73.58 E-value=15 Score=23.52 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=45.2
Q ss_pred ceEEEEeCcHHHH--HHHHHHHHHcCCeEEE-E----cCHHHHHHHH----HcCCCccEEEEecCCCCC--CH-------
Q 048318 26 LFALVVDDDCFIR--TIHSMALKSLGFKVEV-A----ENGKEAVDLF----RSGAKFDIVFIDKEMPVM--NG------- 85 (145)
Q Consensus 26 ~~iLii~~~~~~~--~~l~~~L~~~g~~v~~-~----~~~~~al~~~----~~~~~~dlvl~d~~~~~~--~~------- 85 (145)
.+|++++|.-... ..++..|... +.+.. . .+....++.+ .. .+||+|++.+...|. +.
T Consensus 21 prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~Vvi~~G~ND~~~~~~~~~~~l 98 (200)
T 4h08_A 21 PHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKN-TKFDVIHFNNGLHGFDYTEEEYDKSF 98 (200)
T ss_dssp CEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHH-SCCSEEEECCCSSCTTSCHHHHHHHH
T ss_pred CeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhc-CCCCeEEEEeeeCCCCCCHHHHHHHH
Confidence 3799999985542 3445555432 23331 1 1223333322 23 579999997765543 11
Q ss_pred HHHHHHHHhcCCcceEEEEeC
Q 048318 86 IEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~ 106 (145)
..+++.+++..+.++|++++.
T Consensus 99 ~~ii~~l~~~~p~~~ii~~~~ 119 (200)
T 4h08_A 99 PKLIKIIRKYAPKAKLIWANT 119 (200)
T ss_dssp HHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHhhhCCCccEEEecc
Confidence 345667777788888887754
No 285
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=73.52 E-value=21 Score=25.71 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=55.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|.||.--..-...+...|... ++++. .+....+..+.+.. .....-.. .+-.+++ .....++-+|
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-~~~~~~~~------~~~~~ll---~~~~vD~V~i 74 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-FISDIPVL------DNVPAML---NQVPLDAVVM 74 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-TSCSCCEE------SSHHHHH---HHSCCSEEEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-hcCCCccc------CCHHHHh---cCCCCCEEEE
Confidence 468889988876654343444443 67776 44443443333333 11111111 1222222 2222344333
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCC--CHHHHHHHHHHH
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPL--SVDKILPLMEDL 141 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~~~ 141 (145)
........+....++++|..-|+-||+ +.++..+.++.+
T Consensus 75 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a 115 (359)
T 3m2t_A 75 AGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAA 115 (359)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 333334566678889999988889995 445655555433
No 286
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=73.41 E-value=20 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=8.5
Q ss_pred HHHHHHHHhCCceeecCC
Q 048318 111 AEREAFMQAGLDLCHTKP 128 (145)
Q Consensus 111 ~~~~~~~~~g~~~~l~kP 128 (145)
+....++++|..-++-||
T Consensus 79 ~~~~~al~aGk~Vl~EKP 96 (387)
T 3moi_A 79 EHVVQASEQGLHIIVEKP 96 (387)
T ss_dssp HHHHHHHHTTCEEEECSC
T ss_pred HHHHHHHHCCCceeeeCC
Confidence 334444455544444455
No 287
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=73.25 E-value=18 Score=24.12 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=47.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
|.+++.++...+.+. .|+.+.... +-.+.++...- ...|++++-..- +......+...++.++..++++-+.
T Consensus 34 v~vid~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~-d~~n~~~~~~a~~~~~~~~iia~~~ 106 (234)
T 2aef_A 34 FVLAEDENVRKKVLR-----SGANFVHGDPTRVSDLEKANV-RGARAVIVDLES-DSETIHCILGIRKIDESVRIIAEAE 106 (234)
T ss_dssp EEEESCGGGHHHHHH-----TTCEEEESCTTCHHHHHHTTC-TTCSEEEECCSC-HHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred EEEEECCHHHHHHHh-----cCCeEEEcCCCCHHHHHhcCc-chhcEEEEcCCC-cHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 667777766544333 355554432 22234443322 357888875421 1112334455666677777776665
Q ss_pred CCCHHHHHHHHHhCCceee
Q 048318 107 LNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l 125 (145)
.... ...+...|++..+
T Consensus 107 ~~~~--~~~l~~~G~~~vi 123 (234)
T 2aef_A 107 RYEN--IEQLRMAGADQVI 123 (234)
T ss_dssp SGGG--HHHHHHHTCSEEE
T ss_pred CHhH--HHHHHHCCCCEEE
Confidence 4333 3455678998764
No 288
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=73.24 E-value=25 Score=25.91 Aligned_cols=107 Identities=5% Similarity=-0.098 Sum_probs=63.5
Q ss_pred CceEEEEeCcH-HHHHHHHHHHHHcCCeEE-E-EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 25 RLFALVVDDDC-FIRTIHSMALKSLGFKVE-V-AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~-~~~~~l~~~L~~~g~~v~-~-~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+.+.+|+.+.+ .....++...+..+-.+. . ..+.++....+.. .|++++--. .+.-|.-+++.+.. .+|+
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~---adv~v~pS~-~E~~g~~~lEAma~---G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG---ADVILVPSR-FEPCGLTQLYGLKY---GTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH---CSEEEECCS-CCSSCSHHHHHHHH---TCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh---CCEEEECCc-cCCCcHHHHHHHHC---CCCE
Confidence 45666666554 355666666665543332 2 2233333344433 577666432 33445556666554 5677
Q ss_pred EEEeCCCCHHHHHHHHHhC---------CceeecCCCCHHHHHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAG---------LDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g---------~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
|+. .. .-..+....| ..+++..|-+.++|...|.+++
T Consensus 394 I~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 394 LVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred EEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 653 32 2344556666 7899999999999999999887
No 289
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=73.14 E-value=17 Score=23.87 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=46.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEE-EEcCHHHHHHHHHcC---CCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVE-VAENGKEAVDLFRSG---AKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~~~---~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..++..+|-++...+..+..++..|. .+. ...+..+.+..+... ..+|+|++|.. ..+-..+++.+.+
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 35789999999999999999987765 344 556776666554321 36999999864 2333455666554
No 290
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=73.11 E-value=5.5 Score=28.10 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=36.1
Q ss_pred cCCceEEEEeCc--------HHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC
Q 048318 23 NLRLFALVVDDD--------CFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 23 ~~~~~iLii~~~--------~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~ 79 (145)
.++++|.|+-.. ......+.+.|++.||++..+...+..+..+.. ..+|+++.-++
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~-~~~D~v~~~~h 74 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD-EGFVRAFNALH 74 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH-TTCCEEEECCC
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh-cCCCEEEEcCC
Confidence 356678777541 124567777888899999977744332334444 46999987554
No 291
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=73.04 E-value=25 Score=25.88 Aligned_cols=107 Identities=10% Similarity=-0.017 Sum_probs=66.3
Q ss_pred CceEEEEeCcH-HHHHHHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 25 RLFALVVDDDC-FIRTIHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+.+.+++.+.+ ...+.++...+..+-.+. ...+.++....+.. .|++++--. .+.-|.-+++.+.. .+|+
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~---adv~v~pS~-~E~~~~~~lEAma~---G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG---CDAIIIPSR-FEPCGLTQLYALRY---GCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH---CSEEEECCS-CCSSCSHHHHHHHH---TCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc---CCEEEECcc-cCCCCHHHHHHHHC---CCCE
Confidence 56677777765 356667776666553343 22233333344443 587776433 33445566666654 5677
Q ss_pred EEEeCCCCHHHHHHHHHhC---------CceeecCCCCHHHHHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAG---------LDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g---------~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
|+ +.. .-..+....| ..+++..|-+.++|...|.+++
T Consensus 393 I~-s~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VV-ART---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EE-ESS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EE-eCC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 75 332 2344556666 7889999999999999999887
No 292
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=73.02 E-value=11 Score=25.93 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=31.7
Q ss_pred CceEEEEeCcHHHH--------------HHHHHHHHHcCCeEEEEc--CHHHHH--HHHHcCCCccEEEE
Q 048318 25 RLFALVVDDDCFIR--------------TIHSMALKSLGFKVEVAE--NGKEAV--DLFRSGAKFDIVFI 76 (145)
Q Consensus 25 ~~~iLii~~~~~~~--------------~~l~~~L~~~g~~v~~~~--~~~~al--~~~~~~~~~dlvl~ 76 (145)
+++|||.......+ ..+..+|+..||.|.... +....+ +.+. .+|+|++
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~---~~DvvV~ 73 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD---RCDVLVW 73 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH---TCSEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh---cCCEEEE
Confidence 46788887654322 245788888999998765 544322 2232 4899997
No 293
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=72.96 E-value=20 Score=25.66 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLS--VDKILPLME 139 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~ 139 (145)
.........++++|..-++-||+. .++..+.++
T Consensus 77 ~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~ 111 (354)
T 3db2_A 77 DKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQ 111 (354)
T ss_dssp TSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHH
Confidence 345556677777777777777743 444444433
No 294
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=72.94 E-value=12 Score=21.88 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=22.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHH
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD 63 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 63 (145)
.|+|.|.+....+....-.+..||++..+.+.++.-+
T Consensus 79 liiiydqdqnrleefsrevrrrgfevrtvtspddfkk 115 (134)
T 2l69_A 79 LIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKK 115 (134)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHH
T ss_pred EEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHH
Confidence 4455566666666666666666666666666655443
No 295
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=72.94 E-value=19 Score=26.50 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCccEEEEecCCCCC-CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 60 EAVDLFRSGAKFDIVFIDKEMPVM-NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 60 ~al~~~~~~~~~dlvl~d~~~~~~-~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+..+.+.+ ..+|.|.++....+. ..+++++.+++..+..|+++ ..-.+.+....+.+.|+|.+.+
T Consensus 156 ~~a~~~~~-~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 156 ERVEELVK-AHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHH-TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHH-CCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEE
Confidence 33333434 458988886433221 24677788888766778775 3344677888899999998866
No 296
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=72.89 E-value=10 Score=27.57 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceeec-------CCCCHHHHHHHHHHHH
Q 048318 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCHT-------KPLSVDKILPLMEDLM 142 (145)
Q Consensus 86 ~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l~-------kP~~~~~L~~~i~~~~ 142 (145)
+++++++++..+ .+|||....-.+.+...+++..||+.+.. .|.-..++...+.+.+
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l 326 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIM 326 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHH
Confidence 578888887654 79999999999999999999999998632 2433445555554443
No 297
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=72.79 E-value=19 Score=25.58 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=43.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CC---eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-----HHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GF---KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-----IEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~---~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-----~~~~~~l~ 93 (145)
..+|..+|-++...+..+..+... |+ .+. ...+..+.+.. .. ..||+|++|...+.... .++++.++
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HK-NEFDVIITDSSDPVGPAESLFGQSYYELLR 209 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CT-TCEEEEEECCC-------------HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cC-CCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 357899999999999999887643 22 344 55677766544 22 46999999875432211 46666666
Q ss_pred hc
Q 048318 94 SM 95 (145)
Q Consensus 94 ~~ 95 (145)
+.
T Consensus 210 ~~ 211 (314)
T 2b2c_A 210 DA 211 (314)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 298
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=72.60 E-value=9.3 Score=25.59 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEEeC--cHHHHHHHHHHHHHcCCeEE-EE--cCHHHHHHHHHcCCCccEEEEecCCCCCCHH-------HHHHHHHhc
Q 048318 28 ALVVDD--DCFIRTIHSMALKSLGFKVE-VA--ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-------EATREIRSM 95 (145)
Q Consensus 28 iLii~~--~~~~~~~l~~~L~~~g~~v~-~~--~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-------~~~~~l~~~ 95 (145)
|.+-.. ...........++..|..+. .+ .+..+.++.+.. ..|.|+++...|+..|. +.++.+++.
T Consensus 95 v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~--~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~ 172 (230)
T 1rpx_A 95 VSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLD--AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKI 172 (230)
T ss_dssp EEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTT--TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH
T ss_pred EEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh--hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHH
Q ss_pred CC----cceEEEEeCCCCHHHHHHHHHhCCcee-----ecCCCCHHHHHHHHHHHHhcC
Q 048318 96 GI----KIKIVGVTSLNSEAEREAFMQAGLDLC-----HTKPLSVDKILPLMEDLMKNN 145 (145)
Q Consensus 96 ~~----~~~iv~l~~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~L~~~i~~~~~~~ 145 (145)
.+ +.|+++..+-. .+...++.+.|++.+ +.+.-++.+-.+.+.+.++.+
T Consensus 173 ~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~~~~~ 230 (230)
T 1rpx_A 173 CAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230 (230)
T ss_dssp HHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCCCC
T ss_pred HHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHhcC
No 299
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=72.50 E-value=9.4 Score=27.64 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=43.9
Q ss_pred CHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCC
Q 048318 57 NGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121 (145)
Q Consensus 57 ~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~ 121 (145)
+..+|++.... ...-|+|++-- .+.-+++++.+++..|++|+.+.--+.+-..+..+.+.|.
T Consensus 241 N~~EAlre~~~Di~EGAD~vMVKP---al~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~Gw 304 (342)
T 1h7n_A 241 GRGLARRALERDMSEGADGIIVKP---STFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGV 304 (342)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEES---SGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhhHHhCCCeEEEec---CccHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHcCC
Confidence 56777776431 13589999974 5567999999999888999998766555555555555544
No 300
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=72.47 E-value=6.4 Score=25.53 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=45.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecC-CCCCCHHHHHHHHHhc-CCcceEEEEe
Q 048318 28 ALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKE-MPVMNGIEATREIRSM-GIKIKIVGVT 105 (145)
Q Consensus 28 iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~-~~~~~~~~~~~~l~~~-~~~~~iv~l~ 105 (145)
|+|+|........+.+.|+..|+.+..+.... ....+.. ..+|.+++-=. -++..+ ...+.++.. ....|++-++
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~-~~~dglil~Gg~~~~~~~-~~~~~i~~~~~~~~PilGIC 79 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA-MNPKGIIFSGGPSLENTG-NCEKVLEHYDEFNVPILGIC 79 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH-TCCSEEEECCCSCTTCCT-THHHHHHTGGGTCSCEEEET
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc-cCCCEEEECCCCChhhhh-hHHHHHHHHhhCCCeEEEEc
Confidence 88999888778888999999998887666433 2222333 35887776432 121122 123444432 2357887665
Q ss_pred C
Q 048318 106 S 106 (145)
Q Consensus 106 ~ 106 (145)
.
T Consensus 80 ~ 80 (189)
T 1wl8_A 80 L 80 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 301
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=72.32 E-value=7.9 Score=25.10 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=26.2
Q ss_pred CccccCCceEEEEeCcH--HHHHHHHHHHHHcCCeEEE
Q 048318 19 PSAKNLRLFALVVDDDC--FIRTIHSMALKSLGFKVEV 54 (145)
Q Consensus 19 ~~~~~~~~~iLii~~~~--~~~~~l~~~L~~~g~~v~~ 54 (145)
..+.|-+++|.|-.|+. ...+.+...|+..||+|.-
T Consensus 15 ~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D 52 (166)
T 3s5p_A 15 QTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMD 52 (166)
T ss_dssp ----CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEE
Confidence 34445567888888886 6678999999999999873
No 302
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=72.29 E-value=18 Score=23.80 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=51.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+..|.++|.++...+.+.. ..|+.+.... +..+.++...- ...|++++-..-. ......+...++..+...+++
T Consensus 23 g~~v~vid~~~~~~~~l~~---~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~d-~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFAK---KLKATIIHGDGSHKEILRDAEV-SKNDVVVILTPRD-EVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp TCCEEEEESCHHHHHHHHH---HSSSEEEESCTTSHHHHHHHTC-CTTCEEEECCSCH-HHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCHHHHHHHHH---HcCCeEEEcCCCCHHHHHhcCc-ccCCEEEEecCCc-HHHHHHHHHHHHHcCCCeEEE
Confidence 3467888888877665543 2466655433 23344544433 3579888754321 112223334454456666665
Q ss_pred EeCCCCHHHHHHHHHhCCceeec
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+. +..........|++..+.
T Consensus 98 ~~~--~~~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 98 LVN--DPGNMEIFKKMGITTVLN 118 (218)
T ss_dssp CCC--SGGGHHHHHHHTCEECCC
T ss_pred EEe--CcchHHHHHHCCCCEEEC
Confidence 444 334445567889987653
No 303
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=72.22 E-value=12 Score=27.13 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred CccEEEEecCCCCCC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 70 KFDIVFIDKEMPVMN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+|++.++....+.. .++.++.+++..+.+|++ +..-.+.+....+.++|+|.+.+
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi-~g~v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIM-AGNVVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEE-EEeCCCHHHHHHHHHhCCCEEEE
No 304
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.08 E-value=11 Score=26.70 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=44.6
Q ss_pred CccEEEEecCCCCCCH--H-HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDKEMPVMNG--I-EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~~--~-~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.|.++++|--.. .+. . .+.+.+.+....+.+|+++...+. ....+..-+.-+-.+|.+.+++...+...++
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~--l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP--IIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS--SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 578999995222 332 2 344555554446667766655432 2334555666777789999999999887653
No 305
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=72.01 E-value=14 Score=22.33 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=48.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHH---HcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLF---RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
.+++.++.| ++... -++-.|+++..+.+.+++.+.+ .++ .+.+|++.-++.+.-. +.++.+++. ..|.
T Consensus 2 ~mKiaVIGD-~Dtv~----GFrLaGie~~~v~~~ee~~~~~~~l~~~-digIIlIte~ia~~i~-~~i~~~~~~--~~P~ 72 (115)
T 3aon_B 2 TYKIGVVGD-KDSVS----PFRLFGFDVQHGTTKTEIRKTIDEMAKN-EYGVIYITEQCANLVP-ETIERYKGQ--LTPA 72 (115)
T ss_dssp EEEEEEESC-HHHHG----GGGGGTCEEECCCSHHHHHHHHHHHHHT-TEEEEEEEHHHHTTCH-HHHHHHHTS--SSCE
T ss_pred ceEEEEEEC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHHhc-CceEEEEeHHHHHHhH-HHHHHHhCC--CCCE
Confidence 467888888 44332 3344588887777777665444 443 6889999876544333 345555532 2444
Q ss_pred EE-EeCCCCH------HHHHHHHHhCCceeecCCCCHHHH
Q 048318 102 VG-VTSLNSE------AEREAFMQAGLDLCHTKPLSVDKI 134 (145)
Q Consensus 102 v~-l~~~~~~------~~~~~~~~~g~~~~l~kP~~~~~L 134 (145)
|+ +.+.... .......++=..+.+.+|.+-+.|
T Consensus 73 IveIPs~~g~~~~~~~~i~~~V~~aiG~di~~~~~~~~~~ 112 (115)
T 3aon_B 73 IILIPSHQGTLGIGLEEIQNSVEKAVGQNILSGPSSGENL 112 (115)
T ss_dssp EEEECBTTBCCSHHHHHHHHHHHHHTTCC-----------
T ss_pred EEEECCCCCCCCccHHHHHHHHHHHhCcceEecCCCCccc
Confidence 44 4443322 122223333333455677655443
No 306
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=71.76 E-value=18 Score=23.64 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=47.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHcC---CCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRSG---AKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~~---~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..++..+|-++...+..+..++..|.. +. ...+..+.+...... ..||+|++|... .+-..+++.+..
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~ 162 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLK 162 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHH
Confidence 457899999999999999999887753 44 566777766655421 369999988742 233455665544
No 307
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=71.74 E-value=8.8 Score=27.65 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=44.2
Q ss_pred CHHHHHHHHHc--CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCC
Q 048318 57 NGKEAVDLFRS--GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGL 121 (145)
Q Consensus 57 ~~~~al~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~ 121 (145)
+..+|++.... ...-|+|++-- .+.-+++++.+++..|++|+.+.--+.+-..+..+.+.|.
T Consensus 230 N~~EAlre~~~Di~EGAD~vMVKP---al~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~Gw 293 (330)
T 1pv8_A 230 ARGLALRAVDRDVREGADMLMVKP---GMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGA 293 (330)
T ss_dssp CHHHHHHHHHHHHHTTCSBEEEES---CGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhhHHhCCceEEEec---CccHHHHHHHHHHhcCCCCeEEEEcCcHHHHHHHHHHcCC
Confidence 56677765531 13589999974 5567999999999988999998766555555555555554
No 308
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=71.52 E-value=19 Score=25.39 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=54.3
Q ss_pred CceEEEEeC-cHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHH---HHHHhcCCcce
Q 048318 25 RLFALVVDD-DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT---REIRSMGIKIK 100 (145)
Q Consensus 25 ~~~iLii~~-~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~---~~l~~~~~~~~ 100 (145)
+++|-||.- ...... ....+...+..++.+.+.........+ ..+..-... +-.+++ +.++...+.+-
T Consensus 3 mirvgiIG~gG~i~~~-h~~~l~~~~~~lvav~d~~~~~~~~~~-~~~~~~~~~------~~~~ll~~~~~l~~~~~~vD 74 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPR-HLKAIKEVGGVLVASLDPATNVGLVDS-FFPEAEFFT------EPEAFEAYLEDLRDRGEGVD 74 (312)
T ss_dssp CCEEEEECTTSSSHHH-HHHHHHHTTCEEEEEECSSCCCGGGGG-TCTTCEEES------CHHHHHHHHHHHHHTTCCCS
T ss_pred ceEEEEECCChHHHHH-HHHHHHhCCCEEEEEEcCCHHHHHHHh-hCCCCceeC------CHHHHHHHhhhhcccCCCCc
Confidence 467888887 333333 333444457776644433322111222 112222211 122333 23321223333
Q ss_pred EEEEeC--CCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHHHH
Q 048318 101 IVGVTS--LNSEAEREAFMQAGLDLCHTKPLS--VDKILPLMEDL 141 (145)
Q Consensus 101 iv~l~~--~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~ 141 (145)
+|+++. ..+.+....++++|..=++-||+. .++..+.++.+
T Consensus 75 ~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 119 (312)
T 3o9z_A 75 YLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELE 119 (312)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHH
T ss_pred EEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 333433 346677888999999989999964 56665555443
No 309
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=71.48 E-value=11 Score=27.14 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCeEEE--EcCHHHHHHHHHcCCCccEEEEecCCC----C-CCHHHHHHHHHhc--CCcceEEEEeC
Q 048318 36 FIRTIHSMALKSLGFKVEV--AENGKEAVDLFRSGAKFDIVFIDKEMP----V-MNGIEATREIRSM--GIKIKIVGVTS 106 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~~dlvl~d~~~~----~-~~~~~~~~~l~~~--~~~~~iv~l~~ 106 (145)
......-..|+..|+.+.. +.++...+..+.. -++|.|=+|-.+- . .....+++.+-.. ..++.+| .-+
T Consensus 212 ~~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~vv-AEG 289 (340)
T 4hjf_A 212 ERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTR-LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEG 289 (340)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSSSCGGGTGGG-SCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEEE-EEC
T ss_pred HHHHHHHHHHHHcCCCccccCCCCCcchHHHHHh-CCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEEE-EEe
Confidence 3344444567788988764 5566666777776 6899999996432 1 2233455544331 1244444 345
Q ss_pred CCCHHHHHHHHHhCCce----eecCCCCHHHHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDL----CHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~----~l~kP~~~~~L~~~i~~~~ 142 (145)
-.+.+....+...|++. |+.||...+++...+++..
T Consensus 290 VEt~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 329 (340)
T 4hjf_A 290 VENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAY 329 (340)
T ss_dssp CCSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhcc
Confidence 56777788888888764 3689999999988886543
No 310
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=71.45 E-value=9.2 Score=26.35 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCeEEEEcC------HHHHHHHHHcCCCccEEEEecCC----CC-----------CCHHHHHHHHHhcC
Q 048318 38 RTIHSMALKSLGFKVEVAEN------GKEAVDLFRSGAKFDIVFIDKEM----PV-----------MNGIEATREIRSMG 96 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~------~~~al~~~~~~~~~dlvl~d~~~----~~-----------~~~~~~~~~l~~~~ 96 (145)
...++++|+..|++++.... .....+.+. .||+||++--- .. .+..+.++..-+.
T Consensus 42 ~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~---~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~- 117 (256)
T 2gk3_A 42 ATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN---RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN- 117 (256)
T ss_dssp CHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH---TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCceEEEEecccchhhCCcChhHHh---cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh-
Confidence 34566677777999887631 111112332 48998887411 10 3445666666554
Q ss_pred CcceEEEEeCC
Q 048318 97 IKIKIVGVTSL 107 (145)
Q Consensus 97 ~~~~iv~l~~~ 107 (145)
.-.++++++.
T Consensus 118 -GGgll~igG~ 127 (256)
T 2gk3_A 118 -GGGLLMIGGY 127 (256)
T ss_dssp -TCEEEEECST
T ss_pred -CCEEEEECCh
Confidence 4456666664
No 311
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=71.38 E-value=21 Score=24.24 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCeEEEEcC---HH---HHHHHHHcCCCccEEEEec
Q 048318 38 RTIHSMALKSLGFKVEVAEN---GK---EAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~---~~---~al~~~~~~~~~dlvl~d~ 78 (145)
...++..+++.||.+..+.. .+ +.++.+.. ..+|.+|+-.
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~ 72 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE-RRVDGLILAP 72 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEEeC
Confidence 44555556667887765442 11 23344444 4577666543
No 312
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=71.31 E-value=23 Score=24.52 Aligned_cols=78 Identities=9% Similarity=-0.031 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCcc-EEEEecCCC---CCCHHHHHHHHHhcCC---cceEEEEeCCCCHHHHHHHHHh--CCceee-----
Q 048318 60 EAVDLFRSGAKFD-IVFIDKEMP---VMNGIEATREIRSMGI---KIKIVGVTSLNSEAEREAFMQA--GLDLCH----- 125 (145)
Q Consensus 60 ~al~~~~~~~~~d-lvl~d~~~~---~~~~~~~~~~l~~~~~---~~~iv~l~~~~~~~~~~~~~~~--g~~~~l----- 125 (145)
+..+.+.. . .+ +++.+..-. ....+++++.+.+..+ .+|+++-..-.+.+....+++. |+++.+
T Consensus 162 e~a~~~~~-~-a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 162 DTFRELRK-Y-TNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HHHHHHTT-T-CSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHHHHHHH-h-cCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 66666665 4 55 444555332 2346788999887654 7899887777888899998887 888743
Q ss_pred ---cCC-CCHHHHHHHHH
Q 048318 126 ---TKP-LSVDKILPLME 139 (145)
Q Consensus 126 ---~kP-~~~~~L~~~i~ 139 (145)
..| +++.++...++
T Consensus 240 ~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 240 DIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp GGGTCSSBCHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 345 88888877654
No 313
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=71.19 E-value=21 Score=24.14 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=48.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv~ 103 (145)
+.++||.....-+-..+...|.+.|+.|..+....+.++.+.......+..+..++.+.+.. .+++.+.+....+-+++
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv 87 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLH 87 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999989999988555434434333221234555665555554443 35555554433444444
Q ss_pred E
Q 048318 104 V 104 (145)
Q Consensus 104 l 104 (145)
-
T Consensus 88 ~ 88 (255)
T 4eso_A 88 I 88 (255)
T ss_dssp E
T ss_pred E
Confidence 4
No 314
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=71.17 E-value=12 Score=21.45 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=50.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcC-CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLG-FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+++|+|+.- ......+...|...| +++..+....+..+.+.. .....+..|.. +..++.+.+. ..+ +|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-~~~~~~~~d~~----~~~~~~~~~~--~~d--~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-MGVATKQVDAK----DEAGLAKALG--GFD--AVI 74 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-TTCEEEECCTT----CHHHHHHHTT--TCS--EEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-CCCcEEEecCC----CHHHHHHHHc--CCC--EEE
Confidence 467999999 777777777777788 888866544444444443 34555555543 2222222222 223 333
Q ss_pred EeCC--CCHHHHHHHHHhCCcee
Q 048318 104 VTSL--NSEAEREAFMQAGLDLC 124 (145)
Q Consensus 104 l~~~--~~~~~~~~~~~~g~~~~ 124 (145)
.+.. ........+.+.|..-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCchhhHHHHHHHHHhCCCEE
Confidence 3333 23444556667776544
No 315
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=71.14 E-value=22 Score=24.31 Aligned_cols=63 Identities=8% Similarity=0.165 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCeEEEEcC-----HHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 38 RTIHSMALKSLGFKVEVAEN-----GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~-----~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
...++..+++.||.+..+.. ..+.++.+.. ..+|-+|+-...... +.++.+++. .+|+|++..
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~---~~~~~l~~~--~iPvV~~~~ 96 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-RRVDALIVAHTQPED---FRLQYLQKQ--NFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-TCCSEEEECSCCSSC---HHHHHHHHT--TCCEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-CCCCEEEEeCCCCCh---HHHHHHHhC--CCCEEEECC
Confidence 44455556667888764432 2344555555 457776664322211 444555443 456665543
No 316
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=70.81 E-value=6.6 Score=26.88 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=25.8
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE 56 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~ 56 (145)
|+++|||... ..+-..+...|.+.|++|....
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~ 35 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTS 35 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEE
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEE
Confidence 4578999997 8888888888888899988544
No 317
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=70.80 E-value=22 Score=24.22 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCeEEEEcC-----HHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 38 RTIHSMALKSLGFKVEVAEN-----GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~-----~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
...++..+++.||.+..+.. ..+.++.+.. ..+|-+|+-.... +. +.++.+.+ .+|+|++...
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~--~~-~~~~~~~~---~iPvV~i~~~ 97 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR-ERCEAAILLGTRF--DT-DELGALAD---RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT-TTEEEEEEETCCC--CH-HHHHHHHT---TSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh-CCCCEEEEECCCC--CH-HHHHHHHc---CCCEEEEcCC
Confidence 34555666677988774431 2345555555 5688777754322 22 45555543 5677766543
No 318
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=70.70 E-value=27 Score=25.22 Aligned_cols=75 Identities=5% Similarity=0.010 Sum_probs=45.6
Q ss_pred ceEEEEeCcHH----HHHHHHHHHHHcCCeEEEE-------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 26 LFALVVDDDCF----IRTIHSMALKSLGFKVEVA-------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 26 ~~iLii~~~~~----~~~~l~~~L~~~g~~v~~~-------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.+|.++.++.. ....++..+++.|..+... .+....+..+.. ..+|+|++.... ..+...+++.+++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~~-~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA-DPPAVIVVTHFY-PQDQALFMNQFMT 242 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH-SCCSEEEECCCC-HHHHHHHHHHHTT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcccc-CchHHHHHHHHHH
Confidence 45555544444 3345555666778776521 366677777776 579999986321 1235667888887
Q ss_pred cCCcceEE
Q 048318 95 MGIKIKIV 102 (145)
Q Consensus 95 ~~~~~~iv 102 (145)
.....+++
T Consensus 243 ~g~~~~~~ 250 (419)
T 3h5l_A 243 DPTNSLVY 250 (419)
T ss_dssp SCCSCEEE
T ss_pred cCCCceEE
Confidence 66555544
No 319
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=70.68 E-value=24 Score=24.61 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=45.1
Q ss_pred EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 52 v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
...+.+.+++.+.+.. ..|.|.+|- +. .+.+ ...+.++...+++|+.+ ++.-+.+.+.+....|+|.+-
T Consensus 186 ~vev~tlee~~~A~~a--GaD~I~ld~-~~-~~~l~~~v~~l~~~~~~~~i~A-sGGI~~~ni~~~~~aGaD~i~ 255 (273)
T 2b7n_A 186 EIECESFEEAKNAMNA--GADIVMCDN-LS-VLETKEIAAYRDAHYPFVLLEA-SGNISLESINAYAKSGVDAIS 255 (273)
T ss_dssp EEEESSHHHHHHHHHH--TCSEEEEET-CC-HHHHHHHHHHHHHHCTTCEEEE-ESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEcCCHHHHHHHHHc--CCCEEEECC-CC-HHHHHHHHHHhhccCCCcEEEE-ECCCCHHHHHHHHHcCCcEEE
Confidence 3378888888887765 489999985 21 1111 22234444456688775 455577778889999997763
No 320
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=70.53 E-value=19 Score=24.33 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=53.5
Q ss_pred HHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEE--EEec-CCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHH
Q 048318 43 MALKSLGFK--VEVAENGKEAVDLFRSGAKFDIV--FIDK-EMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 43 ~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlv--l~d~-~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~ 113 (145)
+.|+..|.. ++.+-+..+++.....+ .+.| +++- .-.+.+|.++++.+.+ ....+.| +.++..+....
T Consensus 96 ~~L~~~GI~vn~TlifS~~Qa~~Aa~AG--a~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~i-laAS~R~~~~v 172 (212)
T 3r8r_A 96 RALTDLGIKTNVTLIFNANQALLAARAG--ATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQI-IAASIRHPQHV 172 (212)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHHT--CSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEE-EEBSCCSHHHH
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHcC--CeEEEeccchhhhcCCChHHHHHHHHHHHHHcCCCCEE-EEecCCCHHHH
Confidence 345667755 55777999988776653 4444 2221 1124688888887765 3445544 46888899999
Q ss_pred HHHHHhCCceee
Q 048318 114 EAFMQAGLDLCH 125 (145)
Q Consensus 114 ~~~~~~g~~~~l 125 (145)
.++...|+|..=
T Consensus 173 ~~~a~~G~d~~T 184 (212)
T 3r8r_A 173 TEAALRGAHIGT 184 (212)
T ss_dssp HHHHHTTCSEEE
T ss_pred HHHHHcCCCEEE
Confidence 999999999663
No 321
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=70.42 E-value=6.6 Score=27.04 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 56 ENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
....++++.+.+ ...|++.+.....-. +.+++++.+|+ .++|+|+++...+.- ..|+|.||.
T Consensus 20 ~~t~~~~~~l~~-~GaD~ielG~S~Gvt~~~~~~~v~~ir~--~~~Pivlm~y~~n~i------~~G~dg~ii 83 (240)
T 1viz_A 20 DLPDEQLEILCE-SGTDAVIIGGSDGVTEDNVLRMMSKVRR--FLVPCVLEVSAIEAI------VPGFDLYFI 83 (240)
T ss_dssp CCCHHHHHHHHT-SCCSEEEECC----CHHHHHHHHHHHTT--SSSCEEEECSCGGGC------CSCCSEEEE
T ss_pred cccHHHHHHHHH-cCCCEEEECCCCCCCHHHHHHHHHHhhC--cCCCEEEecCccccc------cCCCCEEEE
No 322
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=70.39 E-value=3.4 Score=28.74 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=33.5
Q ss_pred CceEEEEeCcHH--------HHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 25 RLFALVVDDDCF--------IRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~~--------~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
+++|+|+..... ....+...+++.||++..+...+.....+.. ..+|+++.-.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~-~~~d~v~~~~ 62 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS-MGFQKVFIAL 62 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTT-TTEEEEEECC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhc-cCCCEEEEcC
Confidence 457888876542 3456777888899998876644322222333 4689988764
No 323
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=70.13 E-value=25 Score=24.91 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=44.9
Q ss_pred EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 52 VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 52 v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
...+.+.+++.+.+.. ..|.|.+|-- . .+.+ ...+.++...+++++.+. +.-+.+.+.+....|+|.+-
T Consensus 201 ~vev~tlee~~~A~~a--GaD~I~ld~~-~-~~~l~~~v~~l~~~~~~~~I~AS-GGIt~~ni~~~~~aGaD~i~ 270 (299)
T 2jbm_A 201 EVECSSLQEAVQAAEA--GADLVLLDNF-K-PEELHPTATVLKAQFPSVAVEAS-GGITLDNLPQFCGPHIDVIS 270 (299)
T ss_dssp EEEESSHHHHHHHHHT--TCSEEEEESC-C-HHHHHHHHHHHHHHCTTSEEEEE-SSCCTTTHHHHCCTTCCEEE
T ss_pred EEecCCHHHHHHHHHc--CCCEEEECCC-C-HHHHHHHHHHhhccCCCeeEEEE-CCCCHHHHHHHHHCCCCEEE
Confidence 3378888888877764 4899999852 1 1111 222344444566887754 45577778888999997764
No 324
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=69.83 E-value=23 Score=24.00 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCeEEEEcCH------HHHHHHHHcCCCccEEEE
Q 048318 38 RTIHSMALKSLGFKVEVAENG------KEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~~------~~al~~~~~~~~~dlvl~ 76 (145)
...++..+++.||.+..+... .+.++.+.. ..+|.+++
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi 75 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG-RQIGGIIL 75 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc-CCCCEEEE
Confidence 344555555667776644321 112333333 45676665
No 325
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=69.65 E-value=8.5 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=22.6
Q ss_pred CccEEEEec-CCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 70 KFDIVFIDK-EMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
.+|+|++|- +.-+.+-.++++.+... .+++|+.+
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~--~~~Vi~~G 135 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANR--GYRVIVAG 135 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhC--CCEEEEEe
Confidence 489999994 44445666777776543 66776543
No 326
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=69.53 E-value=23 Score=23.88 Aligned_cols=79 Identities=9% Similarity=-0.002 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCCccEEE-EecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec------CC
Q 048318 59 KEAVDLFRSGAKFDIVF-IDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT------KP 128 (145)
Q Consensus 59 ~~al~~~~~~~~~dlvl-~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~------kP 128 (145)
.+..+.+.. ...+.++ .+..-.+ ...++.++.+++.. .+|+++..+-.+.+....+++.|+++++. .|
T Consensus 155 ~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVE-LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHH-HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHH-cCCCEEEEecccCCCCcCCCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 444444433 3466555 4433211 12488899988754 68999888778888888888899998863 36
Q ss_pred CCHHHHHHHHH
Q 048318 129 LSVDKILPLME 139 (145)
Q Consensus 129 ~~~~~L~~~i~ 139 (145)
.++.++...+.
T Consensus 233 ~~~~~~~~~l~ 243 (252)
T 1ka9_F 233 IPIPKLKRYLA 243 (252)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 78887776654
No 327
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=69.48 E-value=23 Score=23.95 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=42.7
Q ss_pred CHHHHHHHHHcCCCccEEEEecCC--CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEM--PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~--~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+.+++.+.... ..|+|++|... ....-.++++.+++. .. .++..-.+.++...+.+.|++.+.
T Consensus 90 ~~~~i~~~~~a--Gad~I~l~~~~~~~p~~l~~~i~~~~~~--g~--~v~~~v~t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 90 YLQDVDALAQA--GADIIAFDASFRSRPVDIDSLLTRIRLH--GL--LAMADCSTVNEGISCHQKGIEFIG 154 (229)
T ss_dssp SHHHHHHHHHH--TCSEEEEECCSSCCSSCHHHHHHHHHHT--TC--EEEEECSSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHHc--CCCEEEECccccCChHHHHHHHHHHHHC--CC--EEEEecCCHHHHHHHHhCCCCEEE
Confidence 44555554443 48999999864 223556788888764 33 334566788888999999998774
No 328
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=69.43 E-value=20 Score=23.05 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCeEE---EEcCHHHHHH-HH---HcCCCccEEEEecCC
Q 048318 36 FIRTIHSMALKSLGFKVE---VAENGKEAVD-LF---RSGAKFDIVFIDKEM 80 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~---~~~~~~~al~-~~---~~~~~~dlvl~d~~~ 80 (145)
.....|...|++.|+++. .+.|..+.+. .+ .....+|+|+.-=..
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 345678999999998875 4555444332 22 222468999986544
No 329
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=69.43 E-value=23 Score=24.11 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEE--Eec-CCCCCCHHHHHHHHHh----cCCcceEEEEeCCCCHHHH
Q 048318 43 MALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVF--IDK-EMPVMNGIEATREIRS----MGIKIKIVGVTSLNSEAER 113 (145)
Q Consensus 43 ~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl--~d~-~~~~~~~~~~~~~l~~----~~~~~~iv~l~~~~~~~~~ 113 (145)
+.|+..|.. ++.+-+..+++.....+ .+.|- ++- .-.+.+|.++++.+.+ ....+.| +.++..+....
T Consensus 98 ~~L~~~GI~vn~TlifS~~QA~~Aa~AG--a~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~I-laAS~Rn~~~v 174 (223)
T 3s1x_A 98 KTLSSEHINTNCTLVFNPIQALLAAKAG--VTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQI-LVASIRNPIHV 174 (223)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHTT--CSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEE-EEBSCCSHHHH
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHcC--CeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCCEE-EEEeCCCHHHH
Confidence 345666755 55777999998777653 45442 221 1124678888777765 3445554 46788899999
Q ss_pred HHHHHhCCceeec
Q 048318 114 EAFMQAGLDLCHT 126 (145)
Q Consensus 114 ~~~~~~g~~~~l~ 126 (145)
.++...|+|..-.
T Consensus 175 ~~aa~~G~d~~Ti 187 (223)
T 3s1x_A 175 LRSAVIGADVVTV 187 (223)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEe
Confidence 9999999998643
No 330
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=69.24 E-value=22 Score=23.61 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=47.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEE-EEcCHHHHHH-HHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVE-VAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~-~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..++..+|-++...+..+..++..|+ .+. ...+..+.+. .+ . ..||+|++|.... +-..+++.+.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~-~~fD~V~~~~~~~--~~~~~l~~~~~ 164 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-D-KVYDMIFIDAAKA--QSKKFFEIYTP 164 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-T-SCEEEEEEETTSS--SHHHHHHHHGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-c-CCccEEEEcCcHH--HHHHHHHHHHH
Confidence 45789999999999999999988775 344 5566666554 44 3 4699999997533 34556666655
No 331
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=68.91 E-value=19 Score=22.59 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=30.8
Q ss_pred CceEEEEeCcHHH----------HHHHHHHHHHcCCeEEEE------cCHHHHHHHHHc---CCCccEEEEecC
Q 048318 25 RLFALVVDDDCFI----------RTIHSMALKSLGFKVEVA------ENGKEAVDLFRS---GAKFDIVFIDKE 79 (145)
Q Consensus 25 ~~~iLii~~~~~~----------~~~l~~~L~~~g~~v~~~------~~~~~al~~~~~---~~~~dlvl~d~~ 79 (145)
+.+|+++.|.-.. ...+...|...|..+... .+..+.+..+.. ...||+|++...
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G 75 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELG 75 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEee
Confidence 3467777776543 566777777655443322 234444433321 136899999764
No 332
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=68.78 E-value=11 Score=26.56 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee------c-CCCCHHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH------T-KPLSVDKILPLMEDLM 142 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l------~-kP~~~~~L~~~i~~~~ 142 (145)
++.++.+++..+++|++....-.+.+...+++..||+.+. . .|.-..++..-+...+
T Consensus 232 ~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~ 295 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIM 295 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHH
Confidence 6788888876568999998888899999999999988773 2 4544455555444433
No 333
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=68.69 E-value=24 Score=23.74 Aligned_cols=79 Identities=13% Similarity=-0.015 Sum_probs=46.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv 102 (145)
+.++||.....-+-..+...|.+.|+.|..+. +.+.+-+.... ....+..+..++.+.+. .++++.+.+....+-++
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 87 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGE-IGDAALAVAADISKEADVDAAVEAALSKFGKVDIL 87 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-hCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 45789999998888888888888899988544 44433333222 22345555555555443 34555555443333344
Q ss_pred EE
Q 048318 103 GV 104 (145)
Q Consensus 103 ~l 104 (145)
+-
T Consensus 88 i~ 89 (261)
T 3n74_A 88 VN 89 (261)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 334
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=68.66 E-value=17 Score=25.73 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLS--VDKILPLME 139 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~ 139 (145)
....+....++++|..-++-||+. .++..+.++
T Consensus 78 ~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~ 112 (330)
T 3e9m_A 78 QGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFA 112 (330)
T ss_dssp GGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 345555667777787777777743 444444443
No 335
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=68.64 E-value=24 Score=23.86 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCeEEEEcC---HH---HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 38 RTIHSMALKSLGFKVEVAEN---GK---EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~---~~---~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
...++..+++.||.+..+.. .+ +.++.+.. ..+|.+|+-...++ ...+.++.+.+. .+|+|++...
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~~~~~~~~--~iPvV~~~~~ 98 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVH-LKVDAIFITTLDDV-YIGSAIEEAKKA--GIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH-TTCSEEEEECSCTT-TTHHHHHHHHHT--TCCEEEESSC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChH-HHHHHHHHHHHc--CCCEEEecCC
Confidence 45566667778999875442 22 34445555 56998887543221 223566666654 5777777544
No 336
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=68.63 E-value=3.3 Score=28.34 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCccEEEEecCC--CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 60 EAVDLFRSGAKFDIVFIDKEM--PVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 60 ~al~~~~~~~~~dlvl~d~~~--~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
++++.+.. ...|++++.-+. ...+..++++++++ .++|++++.... .....|+|.|+.
T Consensus 22 ~~~~~~~~-~GtD~i~vGGs~gvt~~~~~~~v~~ik~--~~~Pvvlfp~~~------~~v~~gaD~~l~ 81 (228)
T 3vzx_A 22 EQLEILCE-SGTDAVIIGGSDGVTEDNVLRMMSKVRR--FLVPCVLEVSAI------EAIVPGFDLYFI 81 (228)
T ss_dssp THHHHHHT-SSCSEEEECCCSCCCHHHHHHHHHHHTT--SSSCEEEECSCG------GGCCSCCSEEEE
T ss_pred HHHHHHHH-cCCCEEEECCcCCCCHHHHHHHHHHhhc--cCCCEEEeCCCH------HHccccCCEEEE
No 337
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=68.62 E-value=30 Score=24.90 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=50.6
Q ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 22 KNLRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 22 ~~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+.++++|+|+.. ......+...|.+ .++++.+.-..+.++.+.. ....+-+|.. +...+.+.+++ .++-|
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~--~~~~~~~d~~----d~~~l~~~~~~--~DvVi 82 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE--FATPLKVDAS----NFDKLVEVMKE--FELVI 82 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT--TSEEEECCTT----CHHHHHHHHTT--CSEEE
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc--cCCcEEEecC----CHHHHHHHHhC--CCEEE
Confidence 345678999998 6666677777754 5788766555555555543 2344444432 33333344443 24322
Q ss_pred EEEeCCCCHHHHHHHHHhCCceee
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
-.+...........++++|.+ |+
T Consensus 83 ~~~p~~~~~~v~~~~~~~g~~-yv 105 (365)
T 3abi_A 83 GALPGFLGFKSIKAAIKSKVD-MV 105 (365)
T ss_dssp ECCCGGGHHHHHHHHHHHTCE-EE
T ss_pred EecCCcccchHHHHHHhcCcc-eE
Confidence 222223356667778888874 44
No 338
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=68.34 E-value=20 Score=25.62 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=41.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 71 FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 71 ~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.|++++-.. .+.-+..+++.+.. .+|+|+...... .+....|-.+++..|-+.+++...+.++++
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma~---G~PvI~~~~~~~----~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMAC---GVPCIGTRVGGI----PEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHHT---TCCEEEECCTTS----TTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHhc---CCCEEEecCCCh----HHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 577666432 33345556666554 567765432222 223445678899999999999999988775
No 339
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=68.32 E-value=24 Score=24.54 Aligned_cols=43 Identities=21% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCHH-----------------HHHHHHHcCCCccEEEEecCC
Q 048318 37 IRTIHSMALKSLGFKVEVAENGK-----------------EAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~~~-----------------~al~~~~~~~~~dlvl~d~~~ 80 (145)
....+...|.+.|++|..+.... ...+.+.. ..||+|.+-...
T Consensus 35 ~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~Dvi~~~~~~ 94 (342)
T 2iuy_A 35 VVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT-ADVDVVHDHSGG 94 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH-CCCSEEEECSSS
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh-cCCCEEEECCch
Confidence 45566777888899988655332 34455555 578988886544
No 340
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=68.23 E-value=23 Score=23.51 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=46.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc-C--CCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS-G--AKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~-~--~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..++..+|-++...+..+..++..|+. +. ...+..+.+..+.. . ..||+|++|... .+-..+++.+..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~ 170 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLN 170 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHH
Confidence 347899999999999999988877752 44 56677776655532 1 369999998642 233455666654
No 341
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=68.21 E-value=28 Score=24.44 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=12.6
Q ss_pred CHHHHHHHHHhCCceeecCCC
Q 048318 109 SEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~ 129 (145)
.......++++|..-++-||+
T Consensus 75 h~~~~~~al~~gk~V~~EKP~ 95 (325)
T 2ho3_A 75 HFAQAKAALSAGKHVILEKPA 95 (325)
T ss_dssp HHHHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHHcCCcEEEecCC
Confidence 344555666666666666665
No 342
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=68.02 E-value=16 Score=21.51 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=42.0
Q ss_pred CceEEEE-----eCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc
Q 048318 25 RLFALVV-----DDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK 98 (145)
Q Consensus 25 ~~~iLii-----~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~ 98 (145)
.++|+++ ... .....+++.+...|+++. .+.+..++-..+ ..+|+|++-.++... .+-++..-. ..+
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~---~~~D~Ii~t~~l~~~--~~~~~~~~~-~~~ 76 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEVV---DRFDVVLLAPQSRFN--KKRLEEITK-PKG 76 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHHT---TTCSEEEECSCCSSH--HHHHHHHHH-HHT
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhhc---CCCCEEEECCccHHH--HHHHHHHhc-ccC
Confidence 3556665 233 677788888888887643 333444443332 358999998766432 222222211 125
Q ss_pred ceEEEEeC
Q 048318 99 IKIVGVTS 106 (145)
Q Consensus 99 ~~iv~l~~ 106 (145)
.|++.+..
T Consensus 77 ~pv~~I~~ 84 (109)
T 2l2q_A 77 IPIEIINT 84 (109)
T ss_dssp CCEEECCH
T ss_pred CCEEEECh
Confidence 67776643
No 343
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=67.64 E-value=19 Score=25.42 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=55.0
Q ss_pred CceEEEEeC-cHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHH---HHHHh-cCCcc
Q 048318 25 RLFALVVDD-DCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT---REIRS-MGIKI 99 (145)
Q Consensus 25 ~~~iLii~~-~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~---~~l~~-~~~~~ 99 (145)
++++-||.- ..... .....+...+.+++.+.+.......... ..+..-..+ +-.+++ +.+.. ..+.+
T Consensus 3 mirvgiIG~gG~i~~-~h~~~l~~~~~~lvav~d~~~~~~~~~~-~~~~~~~~~------~~~~ll~~~~~l~~~~~~~v 74 (318)
T 3oa2_A 3 MKNFALIGAAGYIAP-RHMRAIKDTGNCLVSAYDINDSVGIIDS-ISPQSEFFT------EFEFFLDHASNLKRDSATAL 74 (318)
T ss_dssp CCEEEEETTTSSSHH-HHHHHHHHTTCEEEEEECSSCCCGGGGG-TCTTCEEES------SHHHHHHHHHHHTTSTTTSC
T ss_pred ceEEEEECCCcHHHH-HHHHHHHhCCCEEEEEEcCCHHHHHHHh-hCCCCcEEC------CHHHHHHhhhhhhhccCCCC
Confidence 467888887 33333 3334444457777644433322122222 222222221 222333 23321 12333
Q ss_pred eEEEEeCC--CCHHHHHHHHHhCCceeecCCC--CHHHHHHHHHH
Q 048318 100 KIVGVTSL--NSEAEREAFMQAGLDLCHTKPL--SVDKILPLMED 140 (145)
Q Consensus 100 ~iv~l~~~--~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~~ 140 (145)
-+|+++.+ .+.+....++++|..-|+-||+ +.++..+.++.
T Consensus 75 D~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 119 (318)
T 3oa2_A 75 DYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVI 119 (318)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHH
T ss_pred cEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHH
Confidence 33444333 4677788899999999999995 45665555543
No 344
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=67.54 E-value=30 Score=24.51 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=47.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~ 103 (145)
+++|.||.--..-...+..+.+..+++++ .+....+..+.+... +..-..+ +-.+ .+.....++-+|.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~g~~~~~------~~~~---~l~~~~~D~V~i~ 72 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA--NGAEAVA------SPDE---VFARDDIDGIVIG 72 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT--TTCEEES------SHHH---HTTCSCCCEEEEC
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH--cCCceeC------CHHH---HhcCCCCCEEEEe
Confidence 46777887765555444433333366666 344333333333321 2211111 1111 1121122333333
Q ss_pred EeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHH
Q 048318 104 VTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLM 138 (145)
Q Consensus 104 l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i 138 (145)
+...........++++|..-++-||+. .++....+
T Consensus 73 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~ 109 (344)
T 3euw_A 73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACK 109 (344)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHH
T ss_pred CCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHH
Confidence 333345556777788887777778843 44444433
No 345
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=67.52 E-value=25 Score=24.50 Aligned_cols=69 Identities=19% Similarity=0.003 Sum_probs=45.7
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 71 FDIVFIDKEMPV--MNGIEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 71 ~dlvl~d~~~~~--~~~~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.|.+++-.+.-. .+-.+.++..++..+. .++.+-+. +.+...++...|+|.+...+++++.+...++.+
T Consensus 152 ~d~vlik~~Hi~~~g~~~~ai~~~r~~~~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 223 (273)
T 2b7n_A 152 DDALMLKDTHLRHVKDLKSFLTHARKNLPFTAKIEIECE--SFEEAKNAMNAGADIVMCDNLSVLETKEIAAYR 223 (273)
T ss_dssp TTCEEECHHHHTTCSSHHHHHHHHGGGSCTTCCEEEEES--SHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHH
T ss_pred cceEEeeCCHHHHhCCHHHHHHHHHHhCCCCceEEEEcC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 666664332211 2335677777776654 46665444 346678889999999988899998888766643
No 346
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=67.47 E-value=38 Score=25.59 Aligned_cols=109 Identities=9% Similarity=-0.090 Sum_probs=53.5
Q ss_pred CCceEEEEeC----cHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCC-ccEEEEecCCCCCCHHHHHHHHHhcC
Q 048318 24 LRLFALVVDD----DCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAK-FDIVFIDKEMPVMNGIEATREIRSMG 96 (145)
Q Consensus 24 ~~~~iLii~~----~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~-~dlvl~d~~~~~~~~~~~~~~l~~~~ 96 (145)
++++|.||.- -..-...+..+.+. .+++++ .+....+..+.+..... +..-.. .+-.++ +....
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~------~d~~el---l~~~~ 108 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGF------DSLESF---AQYKD 108 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEE------SCHHHH---HHCTT
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceee------CCHHHH---hcCCC
Confidence 3578999998 44443444443333 477766 44433333333322111 111111 111222 22222
Q ss_pred CcceEEEEeCCCCHHHHHHHHHhC------CceeecCCCC--HHHHHHHHHHH
Q 048318 97 IKIKIVGVTSLNSEAEREAFMQAG------LDLCHTKPLS--VDKILPLMEDL 141 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~~~~g------~~~~l~kP~~--~~~L~~~i~~~ 141 (145)
.++-+|........+....++++| -.=|+-||+. .++..+.+..+
T Consensus 109 vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a 161 (479)
T 2nvw_A 109 IDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSIS 161 (479)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHH
Confidence 343333222334566677889999 7778889964 55555544433
No 347
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=67.46 E-value=7.3 Score=25.54 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=29.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~ 76 (145)
+++|+|++........+.+.|+..|+.+..+.+.+ .- ..+|.+++
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~------~l-~~~d~lil 46 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPK------AH-EEADLLVL 46 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTT------SC-SSCSEEEE
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecChH------Hc-ccCCEEEE
Confidence 46788997432233446778888899988776532 11 25898887
No 348
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=67.43 E-value=27 Score=23.96 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=47.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv~ 103 (145)
+.++||.....-+-..+...|.+.|+.|..+....+.++.+.......+..+-.++.+.+. ..+++.+.+....+-+++
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 84 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLI 84 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3568899999999999999998899998855544444443332123345555555544433 345555554333344444
No 349
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=67.42 E-value=17 Score=22.76 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=44.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIR 93 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~ 93 (145)
.++..+|-++...+..+..++..|.. +. ...+..+.+.... ..+|+|+++.-.......++++.+.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT--GRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC--SCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc--CCCCEEEECCCCCcchHHHHHHHHH
Confidence 47899999999999999988877753 44 5557666544332 3599999985331122345556664
No 350
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=67.42 E-value=34 Score=25.04 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=64.0
Q ss_pred CceEEEEe----CcHHHHHHHHHHHHHc-CCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCC-----------CCCHH
Q 048318 25 RLFALVVD----DDCFIRTIHSMALKSL-GFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMP-----------VMNGI 86 (145)
Q Consensus 25 ~~~iLii~----~~~~~~~~l~~~L~~~-g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~-----------~~~~~ 86 (145)
+..+++++ ..+...+.++..-+.. +..+. .+.+.+++...... ..|.|.+...-. +...+
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a--GAD~I~vG~gpGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA--GVSAVKVGIGPGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH--TCSEEEECSSCSTTBCHHHHHCCCCCHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc--CCCEEEEecCCCCCCCcccccCcccchH
Confidence 34566664 2334444444444443 55543 57889998887765 489998843211 12445
Q ss_pred HHHHHHHh--cCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 87 EATREIRS--MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 87 ~~~~~l~~--~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..+..+.+ ...++|+|.-..-.+...+..++..||+....
T Consensus 198 ~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 198 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55666554 22368998877878889999999999998753
No 351
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=67.23 E-value=32 Score=24.65 Aligned_cols=107 Identities=10% Similarity=0.082 Sum_probs=68.0
Q ss_pred CCceEEEEeCcHH-HHHHHHHHHHHcCCeEEE-Ec--CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 24 LRLFALVVDDDCF-IRTIHSMALKSLGFKVEV-AE--NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~-~~~~l~~~L~~~g~~v~~-~~--~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.+.+.+++++.+. ....++...+..| .+.. .. +.++....+. ..|++++-... +.-+..+++.+.. .+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~---~adv~v~ps~~-e~~~~~~~EAma~---G~ 355 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG---SVDFVIIPSYF-EPFGLVALEAMCL---GA 355 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT---TCSEEEECBSC-CSSCHHHHHHHHT---TC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH---HCCEEEeCCCC-CCccHHHHHHHHC---CC
Confidence 3566777776543 3467777777777 5443 33 4555555553 36887765433 4455666666654 56
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
|+|+ +... ...+....| .+++..|-+.+++...+.++++
T Consensus 356 Pvi~-s~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 356 IPIA-SAVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-ESST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CeEE-cCCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 7765 4332 233445566 8899999999999999998876
No 352
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=67.22 E-value=25 Score=23.52 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCccEEE-EecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh---CCceee-----
Q 048318 58 GKEAVDLFRSGAKFDIVF-IDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA---GLDLCH----- 125 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl-~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~---g~~~~l----- 125 (145)
..+..+.+.. ...+.|+ .+.+-.+ .-.++.++.+++. .++|+++-++-.+.+....++.. |++.++
T Consensus 151 ~~e~~~~~~~-~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDS-EGCSRFVVTDITKDGTLGGPNLDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHH-TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHh-CCCCEEEEEecCCccccCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 3555555544 4577555 4443321 2357788888864 47899988777887888888888 999875
Q ss_pred -cCCCCHHHHHHH
Q 048318 126 -TKPLSVDKILPL 137 (145)
Q Consensus 126 -~kP~~~~~L~~~ 137 (145)
..|..+.++...
T Consensus 229 ~~~~~~~~~~~~~ 241 (244)
T 2y88_A 229 YARRFTLPQALAA 241 (244)
T ss_dssp HTTSSCHHHHHHH
T ss_pred HCCCcCHHHHHHH
Confidence 347676666554
No 353
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=67.17 E-value=21 Score=25.65 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=45.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CC---eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCC--C---HHHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GF---KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--N---GIEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~---~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~---~~~~~~~l~ 93 (145)
..+|..+|-++...+..+..+... |+ .+. ...+..+.+..... ..||+|++|...+.. . ..++++.++
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~-~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~ 222 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE-GSYDAVIVDSSDPIGPAKELFEKPFFQSVA 222 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT-TCEEEEEECCCCTTSGGGGGGSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC-CCccEEEECCCCccCcchhhhHHHHHHHHH
Confidence 357899999999999998887642 22 344 56677665543322 469999998754332 1 246777776
Q ss_pred hc
Q 048318 94 SM 95 (145)
Q Consensus 94 ~~ 95 (145)
+.
T Consensus 223 ~~ 224 (334)
T 1xj5_A 223 RA 224 (334)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 354
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=66.83 E-value=16 Score=25.93 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMED 140 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~ 140 (145)
.+.++..++..+..++++-+. +.+...++.+.|+|.+...+++++.+...++.
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~--tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~~ 248 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVE--NLDELDDALKAGADIIMLDNFNTDQMREAVKR 248 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEES--SHHHHHHHHHTTCSEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCcEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 455666776655546666554 34667888999999998899999998887753
No 355
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=66.75 E-value=13 Score=27.09 Aligned_cols=97 Identities=14% Similarity=0.281 Sum_probs=62.9
Q ss_pred HHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCCC-----CCCHHHHHHHHHhcC--CcceEEEEeCCCCHHH
Q 048318 42 SMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMP-----VMNGIEATREIRSMG--IKIKIVGVTSLNSEAE 112 (145)
Q Consensus 42 ~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~-----~~~~~~~~~~l~~~~--~~~~iv~l~~~~~~~~ 112 (145)
-..|+..||.+. -+.++...+..+.. .++|.|=+|-.+- +.....+++.+-... ..+.+| .-+-.+.+.
T Consensus 282 l~~l~~~G~~ialDDfG~g~ssl~~L~~-l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l~~~vv-aEGVEt~~~ 359 (400)
T 3sy8_A 282 LVRLWIMGCGLAMDDFGAGYSSLDRLCE-FPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLV-VEGVESDEQ 359 (400)
T ss_dssp HHHHHHHTCEEEEEEECSCSGGGGSSSS-CCCSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHHTCEEE-ECCCCCHHH
T ss_pred HHHHHHCCCEEEEECCCCchhhHHHHHh-CCCCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHcCCeEE-EecCCcHHH
Confidence 345677888865 56677777777766 6799999996432 233444555544321 134443 455567777
Q ss_pred HHHHHHhCCce---e-ecCCCCHHHHHHHHHH
Q 048318 113 REAFMQAGLDL---C-HTKPLSVDKILPLMED 140 (145)
Q Consensus 113 ~~~~~~~g~~~---~-l~kP~~~~~L~~~i~~ 140 (145)
...+.+.|++. | +.||...+++...+..
T Consensus 360 ~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~ 391 (400)
T 3sy8_A 360 RVRLIELGCSIAQGYLFARPMPEQHFLDYCSG 391 (400)
T ss_dssp HHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEcCeecCcCCHHHHHHHHHh
Confidence 77888888653 3 6789999999877654
No 356
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=66.60 E-value=28 Score=23.71 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=46.4
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHH----HHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD----LFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIK 98 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~----~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~ 98 (145)
.+.++||.....-+-..+...|.+.|+.|..+....+.++ .+.. ....+.++..++.+.+.. .+++.+.+....
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 108 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-LGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 108 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh-cCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 3567899999999999999999889999885443222222 2222 123454554444444333 345555544333
Q ss_pred ceEEEE
Q 048318 99 IKIVGV 104 (145)
Q Consensus 99 ~~iv~l 104 (145)
+-+++-
T Consensus 109 iD~li~ 114 (272)
T 1yb1_A 109 VSILVN 114 (272)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 334443
No 357
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=66.60 E-value=18 Score=21.56 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=26.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 70 KFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 70 ~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
.+|+++.-...+...........+...+. ++++.+. +..........|++..+
T Consensus 70 ~~d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~--~~~~~~~l~~~g~~~vi 122 (144)
T 2hmt_A 70 NFEYVIVAIGANIQASTLTTLLLKELDIP-NIWVKAQ--NYYHHKVLEKIGADRII 122 (144)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHHTTCS-EEEEECC--SHHHHHHHHHHTCSEEE
T ss_pred CCCEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 46777765432101122344445555544 5554443 33334445667887654
No 358
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=66.51 E-value=27 Score=23.53 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=44.1
Q ss_pred CHHHHHHHHHcCCCcc-EEEEecCCCCCC---HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 57 NGKEAVDLFRSGAKFD-IVFIDKEMPVMN---GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 57 ~~~~al~~~~~~~~~d-lvl~d~~~~~~~---~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
+..+..+.+.. ...| +.+.|....... .++.++.+++. .++|+++...-.+......++..|+|.++.-
T Consensus 32 d~~~~a~~~~~-~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDE-AGADELVFLDISATHEERAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHH-HTCSCEEEEECCSSTTCHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHH-cCCCEEEEEcCCccccCccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 44444444443 2355 344455432222 24556777654 4789998888888999999999999998653
No 359
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=66.51 E-value=26 Score=23.38 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=4.8
Q ss_pred HHHHHcCCeEE
Q 048318 43 MALKSLGFKVE 53 (145)
Q Consensus 43 ~~L~~~g~~v~ 53 (145)
..+++.||.+.
T Consensus 26 ~~a~~~g~~~~ 36 (272)
T 3o74_A 26 QGARARGYQLL 36 (272)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHCCCEEE
Confidence 33334455444
No 360
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=66.45 E-value=29 Score=23.94 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=45.9
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CC---eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GF---KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~---~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~ 93 (145)
..+|..+|-++...+..+..+... ++ .+. ...|+.+.+... . ..||+|++|...+... ..++++.++
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~-~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~ 176 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-E-NQYDVIMVDSTEPVGPAVNLFTKGFYAGIA 176 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-C-SCEEEEEESCSSCCSCCCCCSTTHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-C-CCeeEEEECCCCCCCcchhhhHHHHHHHHH
Confidence 357999999999999998887531 22 344 566776655432 2 4699999997654321 356777776
Q ss_pred hc
Q 048318 94 SM 95 (145)
Q Consensus 94 ~~ 95 (145)
+.
T Consensus 177 ~~ 178 (275)
T 1iy9_A 177 KA 178 (275)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 361
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=66.32 E-value=31 Score=24.26 Aligned_cols=75 Identities=13% Similarity=-0.038 Sum_probs=48.3
Q ss_pred eEEEE-eCcHHH---HHHHHHHHHHcCCeEE---EE----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVV-DDDCFI---RTIHSMALKSLGFKVE---VA----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii-~~~~~~---~~~l~~~L~~~g~~v~---~~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++ +++... .+.++..+++.|..+. .. .+....+..+.. ..||+|++... +.....+++.+++.
T Consensus 153 ~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~dai~~~~~--~~~a~~~~~~~~~~ 229 (375)
T 4evq_A 153 KAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIAS-LKPDCVYAFFS--GGGALKFIKDYAAA 229 (375)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEECC--THHHHHHHHHHHHT
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEecC--cchHHHHHHHHHHc
Confidence 44444 444433 4566677778887764 12 355666666655 46999998543 34577788888887
Q ss_pred CCcceEEEE
Q 048318 96 GIKIKIVGV 104 (145)
Q Consensus 96 ~~~~~iv~l 104 (145)
...+|++..
T Consensus 230 g~~vp~~~~ 238 (375)
T 4evq_A 230 NLGIPLWGP 238 (375)
T ss_dssp TCCCCEEEE
T ss_pred CCCceEEec
Confidence 777887654
No 362
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=66.14 E-value=27 Score=23.38 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=25.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 71 FDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 71 ~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
.+++=+... ..++.+.++.+++..+...+ -...-...+....++..|++.++.
T Consensus 42 v~~iel~~k--~~~~~~~i~~l~~~~~~~~v-gagtvi~~d~~~~A~~aGAd~v~~ 94 (214)
T 1wbh_A 42 VRVLNVTLR--TECAVDAIRAIAKEVPEAIV-GAGTVLNPQQLAEVTEAGAQFAIS 94 (214)
T ss_dssp CCEEEEESC--STTHHHHHHHHHHHCTTSEE-EEESCCSHHHHHHHHHHTCSCEEE
T ss_pred CCEEEEeCC--ChhHHHHHHHHHHHCcCCEE-eeCEEEEHHHHHHHHHcCCCEEEc
Confidence 444444332 33455666655554443322 222234455566666666665544
No 363
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.11 E-value=17 Score=21.16 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=67.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHH---HHcCCCccEEEEecCCCCCC-HHHHHHHHHhcCCcce
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDL---FRSGAKFDIVFIDKEMPVMN-GIEATREIRSMGIKIK 100 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~---~~~~~~~dlvl~d~~~~~~~-~~~~~~~l~~~~~~~~ 100 (145)
++-|||-.++.+...-++.-.+..||.|.-+.+.++.-.. +.+...|.-+++=.+ +.. --+++..+...+ -+
T Consensus 2 kililintnndelikkikkevenqgyqvrdvndsdelkkemkklaeeknfekiliisn--dkqllkemlelisklg--yk 77 (134)
T 2lci_A 2 KILILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISN--DKQLLKEMLELISKLG--YK 77 (134)
T ss_dssp CCEEEEECSCHHHHHHHHHHTTTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEES--CHHHHHHHHHHHHHHT--CC
T ss_pred eEEEEEcCCcHHHHHHHHHHHHccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcC--cHHHHHHHHHHHHHhC--ce
Confidence 4567888999999999999999999999999999886543 333345653333211 111 123444444443 34
Q ss_pred EEEEeCCCCHHHHHHH-HHhCCceee-cCCCCHHHHHHHHHHH
Q 048318 101 IVGVTSLNSEAEREAF-MQAGLDLCH-TKPLSVDKILPLMEDL 141 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~-~~~g~~~~l-~kP~~~~~L~~~i~~~ 141 (145)
+.++....+.....+. ......+|= .|-.+-++-...++..
T Consensus 78 vflllqdqdeneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 78 VFLLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred eEEEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 4555555566555544 345566774 4445555555555443
No 364
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=65.96 E-value=24 Score=25.15 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=40.5
Q ss_pred CHHHHHHHHHcCCCccEEEEecCC--CCCC---HHHHHHHHHhcCCcceEEEEeCCC------------C-----HHHHH
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEM--PVMN---GIEATREIRSMGIKIKIVGVTSLN------------S-----EAERE 114 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~--~~~~---~~~~~~~l~~~~~~~~iv~l~~~~------------~-----~~~~~ 114 (145)
+...+++.+.+....+++++.... +..+ .+..+..+++ . +.||++-++.. . .....
T Consensus 170 ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~ 247 (298)
T 3fs2_A 170 DMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLAR 247 (298)
T ss_dssp GHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHH
Confidence 345677777654467899987643 2111 2344555665 3 78988633322 2 45567
Q ss_pred HHHHhCCceee
Q 048318 115 AFMQAGLDLCH 125 (145)
Q Consensus 115 ~~~~~g~~~~l 125 (145)
.|...||++++
T Consensus 248 AAvAlGAdGl~ 258 (298)
T 3fs2_A 248 AAVAVGVAGFF 258 (298)
T ss_dssp HHHHHCCSEEE
T ss_pred HHHHcCCCEEE
Confidence 88899999654
No 365
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=65.92 E-value=28 Score=23.46 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
..+.++.+++.. ++|+++-.+-...+....++..|++.++.-
T Consensus 179 ~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 179 AYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 356777777654 678876666666588888889999998743
No 366
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=65.71 E-value=29 Score=23.60 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCeEEEEcCH------HH---HHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 38 RTIHSMALKSLGFKVEVAENG------KE---AVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~~------~~---al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
...++..+++.||.+..+... .+ .++.+.. ..+|.+++-.... + .+.++.+++. .+|+|++.
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~--~-~~~~~~l~~~--~iPvV~~~ 97 (290)
T 2rgy_A 27 LKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG-RDCDGVVVISHDL--H-DEDLDELHRM--HPKMVFLN 97 (290)
T ss_dssp HHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH-TTCSEEEECCSSS--C-HHHHHHHHHH--CSSEEEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh-cCccEEEEecCCC--C-HHHHHHHhhc--CCCEEEEc
Confidence 344455555667776543321 12 3444444 3567666543211 1 2334444432 35555553
No 367
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=65.70 E-value=25 Score=25.31 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee------cC-CCCHHHHHHHHHHHHh
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH------TK-PLSVDKILPLMEDLMK 143 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l------~k-P~~~~~L~~~i~~~~~ 143 (145)
.++++.+++..+.+|||..++-.+.+.+.+.+.+||+.+- .+ |--..++.+-+...++
T Consensus 265 ~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~ 329 (354)
T 3tjx_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMA 329 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHH
Confidence 3455666666678899999999999999999999998763 22 6555666666655543
No 368
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=65.69 E-value=35 Score=24.63 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=71.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHHc--CCeEE--EEc------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC
Q 048318 27 FALVVDDDCFIRTIHSMALKSL--GFKVE--VAE------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG 96 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~--g~~v~--~~~------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~ 96 (145)
+|=++.........+...+... |+... .-. +..++++.+.+....++|++-.++.+....++++.+|+..
T Consensus 170 ~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~~~~~r~~~ 249 (334)
T 3mwd_B 170 SVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGR 249 (334)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHTTS
T ss_pred CEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHHHHHHHHhhc
Confidence 4788888888887777777654 55433 222 4788888887644567777765555554577888888744
Q ss_pred CcceEEEEeCCC-CH-----------------------HHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 97 IKIKIVGVTSLN-SE-----------------------AEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 97 ~~~~iv~l~~~~-~~-----------------------~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
...|||++-... .. .....+.++|+ ...-++++|...++.+++
T Consensus 250 ~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv----~~v~~~~el~~~~~~~~~ 316 (334)
T 3mwd_B 250 LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGV----FVPRSFDELGEIIQSVYE 316 (334)
T ss_dssp CCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTC----BCCSSGGGHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCC----eEcCCHHHHHHHHHHHHH
Confidence 567888873332 21 22233334444 446677888888877664
No 369
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=65.66 E-value=30 Score=23.75 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCH------HHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 36 FIRTIHSMALKSLGFKVEVAENG------KEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~~~~~------~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
.....++..+++.||.+..+... .+.++.+.. ..+|-+|+-..... ..+.++.+.+ .+|+|++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~--~~~~~~~l~~---~iPvV~i~~~ 103 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE-GRVDGVLLQRREDF--DDDMLAAVLE---GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS-CSSSEEEECCCTTC--CHHHHHHHHT---TSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCC--cHHHHHHHhC---CCCEEEECCc
Confidence 34556666677788887754421 234555555 56887776432222 1114555554 5677766443
No 370
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=65.63 E-value=33 Score=24.32 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=43.9
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
+.++.++.+.+ ..+|+|.+....| .++++.+++. .++++... .+......+...|+|.++.
T Consensus 84 ~~~~~~~~~~~-~g~d~V~~~~g~p----~~~~~~l~~~--gi~vi~~v--~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 84 PYAEYRAAIIE-AGIRVVETAGNDP----GEHIAEFRRH--GVKVIHKC--TAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp CHHHHHHHHHH-TTCCEEEEEESCC----HHHHHHHHHT--TCEEEEEE--SSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHh-cCCCEEEEcCCCc----HHHHHHHHHc--CCCEEeeC--CCHHHHHHHHHcCCCEEEE
Confidence 45567777766 5799999887654 5778888775 46666433 3566777889999999876
No 371
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=65.53 E-value=32 Score=24.08 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=54.4
Q ss_pred ceEEEEeCcHHHHHHHHHHHH-HcCCeEEE-------EcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCC
Q 048318 26 LFALVVDDDCFIRTIHSMALK-SLGFKVEV-------AENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGI 97 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~-~~g~~v~~-------~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~ 97 (145)
..+++.+++......+...+. ..|.+++. ..+....+..+.. ..||+|++-.. ..+...+++++++...
T Consensus 145 ~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~--~~~~~~~~~~~~~~g~ 221 (353)
T 4gnr_A 145 KVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKG-KDFDAIVVPGY--YNEAGKIVNQARGMGI 221 (353)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHT-SCCSEEECCSC--HHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEecC--cHHHHHHHHHHHHcCC
Confidence 344555654444555555554 45766542 2366777777776 67999987542 3356778888888777
Q ss_pred cceEEEEeCCCCHHHHHHH
Q 048318 98 KIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~ 116 (145)
..+++.............+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~ 240 (353)
T 4gnr_A 222 DKPIVGGDGFNGEEFVQQA 240 (353)
T ss_dssp CSCEEECGGGCSHHHHHHH
T ss_pred CCcEEEecccccchhhhhh
Confidence 7777665555555554443
No 372
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=65.42 E-value=31 Score=23.86 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCeEEEEcC---HH---HHHHHHHcCCCccEEEE
Q 048318 38 RTIHSMALKSLGFKVEVAEN---GK---EAVDLFRSGAKFDIVFI 76 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~---~~---~al~~~~~~~~~dlvl~ 76 (145)
...++...+..||.+..+.+ .. +.++.+.. ..+|.||+
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~-~~vdgIi~ 69 (296)
T 2hqb_A 26 YEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVD-GGVNLIFG 69 (296)
T ss_dssp HHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHH-TTCCEEEE
T ss_pred HHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEE
Confidence 44555556666776654421 11 23343434 35676665
No 373
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=65.34 E-value=20 Score=21.73 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
++.+|+|++-.. ....+...|...|+.++....-.+.++.+.. ....++..|.
T Consensus 6 ~~~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~ 58 (140)
T 3fwz_A 6 ICNHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNA 58 (140)
T ss_dssp CCSCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCT
T ss_pred CCCCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCC
Confidence 345788998755 5556666777889999977766666666665 3456655554
No 374
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=65.33 E-value=20 Score=21.61 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=35.5
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
.+|+|++-.. ....+...|...|+.+.......+..+.+.. .....+..|.
T Consensus 7 ~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~ 57 (141)
T 3llv_A 7 YEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADP 57 (141)
T ss_dssp CSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCT
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCC
Confidence 4688998855 6677777888889999877666666666655 3456665554
No 375
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=65.29 E-value=27 Score=23.06 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=46.1
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCC--eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGF--KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..++..+|-++...+..+..+...|. .+. ...+..+.+........||+|+++...+ +-..+++.+..
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~ 148 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSP 148 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHH
Confidence 35789999999999999999987775 244 4445555444332114699999987643 44566666655
No 376
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=65.25 E-value=35 Score=24.41 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhCCceeecCCCC--HHHHHHHHH
Q 048318 108 NSEAEREAFMQAGLDLCHTKPLS--VDKILPLME 139 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~ 139 (145)
........++++|..-++-||+. .++....++
T Consensus 83 ~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~ 116 (362)
T 1ydw_A 83 LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVD 116 (362)
T ss_dssp GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHH
Confidence 35566777888888777788854 455444443
No 377
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=65.18 E-value=28 Score=23.27 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=63.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEE--------cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcC
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVA--------ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMG 96 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~ 96 (145)
+.+||+.-.+. .+..+...|++.|+.+..+ ....+..+.+.. ..+|+|++= ..++.+.+-..-...
T Consensus 110 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~-~~~d~v~ft----S~s~v~~~~~~~~~~ 183 (229)
T 3p9z_A 110 KKSVLYLRAKE-IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKP-KEKSILIFT----AISHAKAFLHYFEFL 183 (229)
T ss_dssp TCEEEEEEESS-CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSC-CTTCEEEEC----SHHHHHHHHHHSCCC
T ss_pred CCEEEEECCcc-chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhc-CCCeEEEEE----CHHHHHHHHHHhCcc
Confidence 44677765543 3667778888888665421 222334445544 568988872 123433322221122
Q ss_pred CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 97 IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 97 ~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
..++++.+ .+.....+.+.|..-++.+..+.+.|+..+..+.
T Consensus 184 ~~~~~~aI----G~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~ 225 (229)
T 3p9z_A 184 ENYTAISI----GNTTALYLQEQGIPSYIAKKPSLEACLELALSLR 225 (229)
T ss_dssp TTCEEEES----SHHHHHHHHHTTCCEEECSSSSHHHHHHHHHHTC
T ss_pred cCCEEEEE----CHHHHHHHHHcCCCceeCCCCCHHHHHHHHHHHh
Confidence 34556554 3444556667788766777778999999887654
No 378
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=64.90 E-value=34 Score=24.23 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=43.9
Q ss_pred eEEEE-eCcHH---HHHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVV-DDDCF---IRTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii-~~~~~---~~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++ +++.. ....++..+++.|..+.. + .+....+..+.. ..||+|++... ..+...+++.+++.
T Consensus 144 ~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~--~~~~~~~~~~~~~~ 220 (379)
T 3n0w_A 144 TWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKA-SGAQLIVSTSG--GAANINIMKQAREF 220 (379)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHH-HTCSEEEECCC--HHHHHHHHHHHHHT
T ss_pred EEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHH-CCCCEEEEecc--cchHHHHHHHHHHc
Confidence 45444 44432 345667777777877642 2 255666776665 46999998532 23456678888877
Q ss_pred CCcce
Q 048318 96 GIKIK 100 (145)
Q Consensus 96 ~~~~~ 100 (145)
....|
T Consensus 221 g~~~~ 225 (379)
T 3n0w_A 221 GLPSK 225 (379)
T ss_dssp TCSCS
T ss_pred CCCCC
Confidence 66666
No 379
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=64.87 E-value=16 Score=22.12 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=36.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEec
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
.+++++--.+++.+..+...|+.+|-.|...... ... ..+|+.+.|-
T Consensus 7 gVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der------~~~-~eyDi~lTDn 53 (117)
T 2kx7_A 7 DVCVMVDVTSAEIRNIVTRQLENWGATCITPDER------LIS-QDYDIFLTDN 53 (117)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS------SSC-CCCSEEEEES
T ss_pred CcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc------CCC-CcccEEEecC
Confidence 5788999999999999999999999777654221 112 5699999985
No 380
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=64.69 E-value=19 Score=24.19 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=43.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv 102 (145)
+.++||.....-+-..+...|.+.|+.|..+. +....-+.... ....+.++..++.+.+.. ++++.+.+....+-++
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 90 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK-LGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA 90 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHH-hCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence 45789999999999999999988899987543 22211111111 112444554444444333 3455554433233334
Q ss_pred E
Q 048318 103 G 103 (145)
Q Consensus 103 ~ 103 (145)
+
T Consensus 91 i 91 (265)
T 2o23_A 91 V 91 (265)
T ss_dssp E
T ss_pred E
Confidence 3
No 381
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=64.68 E-value=35 Score=24.29 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=49.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
++++|.||.--..-...+..+.+. .+++++ .+....+..+.+.. .+.+-.. .+-.+++ .....++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~------~~~~~ll---~~~~~D~V~ 80 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE--RTGARGH------ASLTDML---AQTDADIVI 80 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH--HHCCEEE------SCHHHHH---HHCCCSEEE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH--HcCCcee------CCHHHHh---cCCCCCEEE
Confidence 356788888765555555444443 367765 34333333333322 1222111 1122222 222233333
Q ss_pred EEEeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHH
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLME 139 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~ 139 (145)
|........+....++++|..-++-||+. .++..+.++
T Consensus 81 i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~ 120 (354)
T 3q2i_A 81 LTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVK 120 (354)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHH
Confidence 22222334555677778887777778853 444444433
No 382
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=64.68 E-value=26 Score=22.79 Aligned_cols=101 Identities=9% Similarity=-0.075 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCeEEE-Ec---CHHHHHHHHHcCCCccEE-EEecC---CCCCCHH-HHHHHHHhcCCcceEEEEeC
Q 048318 36 FIRTIHSMALKSLGFKVEV-AE---NGKEAVDLFRSGAKFDIV-FIDKE---MPVMNGI-EATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~-~~---~~~~al~~~~~~~~~dlv-l~d~~---~~~~~~~-~~~~~l~~~~~~~~iv~l~~ 106 (145)
.....+.+.+++.|..+-. +. +..+..+.+.. ...|.| +.=.. .++.+.. +.++.++.. +.|+++..+
T Consensus 90 ~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~-~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~--~~pi~v~GG 166 (207)
T 3ajx_A 90 STIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA-LGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA--RVPFSVAGG 166 (207)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-TTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH--TSCEEEESS
T ss_pred HHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH-hCCCEEEEEecccccccCCCchHHHHHHhhCC--CCCEEEECC
Confidence 3344455556555665532 32 44554444433 347877 43111 1222222 444444432 567765544
Q ss_pred CCCHHHHHHHHHhCCceee-----cCCCCHHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCH-----TKPLSVDKILPLMED 140 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l-----~kP~~~~~L~~~i~~ 140 (145)
- +.+...+++++|++.+. .+.-++.+-.+.+.+
T Consensus 167 I-~~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~ 204 (207)
T 3ajx_A 167 V-KVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRA 204 (207)
T ss_dssp C-CGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred c-CHHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHH
Confidence 4 46677888999999885 445556665555544
No 383
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=64.54 E-value=16 Score=25.65 Aligned_cols=92 Identities=21% Similarity=0.130 Sum_probs=52.8
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEe
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVT 105 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~ 105 (145)
++|.|+.+.......+...|++.|+++.......+.+ ..+|+|++= ++||. +++..+.....+|++-+.
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~------~~~DlvIvl----GGDGT-~L~aa~~~~~~~PilGIN 98 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL------ENFDFIVSV----GGDGT-ILRILQKLKRCPPIFGIN 98 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG------GGSSEEEEE----ECHHH-HHHHHTTCSSCCCEEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc------CCCCEEEEE----CCCHH-HHHHHHHhCCCCcEEEEC
Confidence 4577776543337778888999999987655432211 247887752 44553 344444422127888775
Q ss_pred CCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 106 SLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
. |-.+|+. +++++++...+.+++
T Consensus 99 ~-------------G~lGFLt-~~~~~~~~~~l~~l~ 121 (278)
T 1z0s_A 99 T-------------GRVGLLT-HASPENFEVELKKAV 121 (278)
T ss_dssp C-------------SSSCTTC-CBBTTBCHHHHHHHH
T ss_pred C-------------CCCcccc-ccCHHHHHHHHHHHH
Confidence 3 4445654 455555555555554
No 384
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=64.53 E-value=31 Score=23.55 Aligned_cols=73 Identities=10% Similarity=0.192 Sum_probs=53.0
Q ss_pred HcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC-CC-HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCce
Q 048318 47 SLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV-MN-GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDL 123 (145)
Q Consensus 47 ~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~-~~-~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~ 123 (145)
..|..+. =+.+..|+...+.. .+|+|=+ .|. .- |.++++.++.-.+++|++....- +.+...+++..|+..
T Consensus 125 ~~gi~~ipGv~TptEi~~A~~~--Gad~vK~---FPa~~~gG~~~lkal~~p~p~ip~~ptGGI-~~~n~~~~l~aGa~~ 198 (232)
T 4e38_A 125 EIGIDIVPGVNNPSTVEAALEM--GLTTLKF---FPAEASGGISMVKSLVGPYGDIRLMPTGGI-TPSNIDNYLAIPQVL 198 (232)
T ss_dssp HHTCEEECEECSHHHHHHHHHT--TCCEEEE---CSTTTTTHHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBC
T ss_pred HcCCCEEcCCCCHHHHHHHHHc--CCCEEEE---CcCccccCHHHHHHHHHHhcCCCeeeEcCC-CHHHHHHHHHCCCeE
Confidence 3465554 46689998888765 4787766 453 33 79999999987778999865444 567788999998776
Q ss_pred ee
Q 048318 124 CH 125 (145)
Q Consensus 124 ~l 125 (145)
..
T Consensus 199 ~v 200 (232)
T 4e38_A 199 AC 200 (232)
T ss_dssp CE
T ss_pred EE
Confidence 53
No 385
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=64.24 E-value=28 Score=22.91 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=40.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~ 94 (145)
+.+|||.....-+-..+...|.+.|+.|..+....+.++.+.... ..+..+..++.+.+.. .+++.+.+
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-EGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hhceEEEecCCCHHHHHHHHHHHHH
Confidence 456899999999998999888888999885443333333332211 1334444444443333 34444443
No 386
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=64.21 E-value=36 Score=24.20 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=49.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC-eEEEEcC--HHHHHHHHHcCCCccEEEEecCCCC-----------CC-HHHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF-KVEVAEN--GKEAVDLFRSGAKFDIVFIDKEMPV-----------MN-GIEATR 90 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~-~v~~~~~--~~~al~~~~~~~~~dlvl~d~~~~~-----------~~-~~~~~~ 90 (145)
|+|||......+-..+...|.+.|+ ++..+.- ..+.++.+.. .+|+|+--..... .. ...+++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~--~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~ 78 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL--KADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLD 78 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH--HCSEEEECCCSBCTTCSTTCSSSCCBHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc--cCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999888888888888 7776543 3444444433 3898885432211 11 244666
Q ss_pred HHHhcCCcceEEEEeCC
Q 048318 91 EIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 91 ~l~~~~~~~~iv~l~~~ 107 (145)
..++.....++|.+++.
T Consensus 79 a~~~~~~~~~~v~~Ss~ 95 (369)
T 3st7_A 79 ILTRNTKKPAILLSSSI 95 (369)
T ss_dssp HHTTCSSCCEEEEEEEG
T ss_pred HHHHhCCCCeEEEeCch
Confidence 66654433357766653
No 387
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=64.14 E-value=32 Score=23.52 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
..+.++.+++.. ++||++-.+-.+.+....+...|+|.++.
T Consensus 189 ~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 456788888754 67888766666688899999999999864
No 388
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=64.13 E-value=22 Score=21.81 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=43.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHH
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIR 93 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~ 93 (145)
++..+|-++...+..+..+...+..+. ...+..+.+..... ...+|+|+++.-.. ....++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 488999999999999988887765444 45566665444332 13699999995433 33345556555
No 389
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=64.04 E-value=35 Score=24.00 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCcceEE--EEeCCCCHHHHHHHHHhCCceeecC-----CCCHHHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCHTK-----PLSVDKILPLMEDLM 142 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv--~l~~~~~~~~~~~~~~~g~~~~l~k-----P~~~~~L~~~i~~~~ 142 (145)
++++++.+++. ..+|++ +.++-.+.+....++..|++.+..- .-++......+...+
T Consensus 195 ~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~ 258 (305)
T 2nv1_A 195 PYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEAT 258 (305)
T ss_dssp CHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHH
Confidence 45677777764 356777 4444458888889999999988543 224444555554443
No 390
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=64.00 E-value=31 Score=23.43 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=43.9
Q ss_pred CHHHHHHHHHcCCCccEEE-EecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 57 NGKEAVDLFRSGAKFDIVF-IDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl-~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
+..+..+.+.+ ...|.+. .|..... ...++.++.+++.. .+|+++...-.+......++..|++..+.-
T Consensus 31 ~~~~~a~~~~~-~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHH-HTCSEEEEEETTTSSCSSCCCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHH-CCCCEEEEEecCcccCCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 44444444443 2355444 4543221 12377888887653 789988777677788888999999998754
No 391
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=63.89 E-value=37 Score=24.72 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=40.7
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC---eEE-EEcCHHHHHHHHH-cCCCccEEEEec
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGF---KVE-VAENGKEAVDLFR-SGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~---~v~-~~~~~~~al~~~~-~~~~~dlvl~d~ 78 (145)
.+|.-+|-++...+..+..++..|+ .+. ...+..+.+.... ....||+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 3689999999999999999988777 455 6668777665443 124699999984
No 392
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=63.58 E-value=17 Score=24.33 Aligned_cols=54 Identities=9% Similarity=-0.073 Sum_probs=40.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
.++..||-++...+..+...+..+..+. ...+..+....+.. ..||.|+.|.-.
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD-GHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT-TCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc-cCCceEEEeeee
Confidence 4678999999999999988887776666 45566655544444 569999998643
No 393
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=63.57 E-value=31 Score=24.02 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee------cCCCCHHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH------TKPLSVDKILPLMEDLM 142 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l------~kP~~~~~L~~~i~~~~ 142 (145)
+++++.+++.. ++|++....-.+.+...+++..||+.+. ..|....++...+...+
T Consensus 230 ~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 230 LKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 46777777654 7899887777789999999999998773 34655566665555543
No 394
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=63.53 E-value=19 Score=25.27 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 86 ~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
++.++.+++..+ ++||+....-.+.+...+++..||+.+.
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ 269 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQ 269 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 677888887543 7999999888999999999999998874
No 395
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=63.34 E-value=31 Score=23.24 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=46.1
Q ss_pred CHHHHHHHHHcCCCccEE-EEecCCC---CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 57 NGKEAVDLFRSGAKFDIV-FIDKEMP---VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlv-l~d~~~~---~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
+..+..+.+.+ ...|.+ +.|.+-. ....+++++.+++.. .+|+++-..-.+.+....++..|++..+.-
T Consensus 36 ~~~~~a~~~~~-~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHH-TTCSEEEEEETTTTTCSSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHH-cCCCEEEEEecCcccCCCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 44444454444 346644 4454322 223478888888754 789988888788889999999999988643
No 396
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=63.28 E-value=31 Score=23.09 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=51.1
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-----CHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-----NGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGI 97 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-----~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~ 97 (145)
.+.+|||.....-+-..+...|.+.|+.|.... ...+....+.. ...++.++..++.+.+. ..+++.+.+...
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 90 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA-LGFDFYASEGNVGDWDSTKQAFDKVKAEVG 90 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 456789999999999999999988999887533 33344444444 33556666655555444 345666666554
Q ss_pred cceEEEEe
Q 048318 98 KIKIVGVT 105 (145)
Q Consensus 98 ~~~iv~l~ 105 (145)
.+-+++-.
T Consensus 91 ~id~lv~~ 98 (256)
T 3ezl_A 91 EIDVLVNN 98 (256)
T ss_dssp CEEEEEEC
T ss_pred CCCEEEEC
Confidence 55555543
No 397
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=63.02 E-value=35 Score=23.65 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=45.4
Q ss_pred eEEEEe-CcHH---HHHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVVD-DDCF---IRTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii~-~~~~---~~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++. ++.. ..+.++..+++.|..+.. . .+....+..+.. ..||+|++... +.....+++.+++.
T Consensus 140 ~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~i~~~~~--~~~a~~~~~~~~~~ 216 (346)
T 1usg_A 140 RIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKK-ENIDFVYYGGY--YPEMGQMLRQARSV 216 (346)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHH-TTCCEEEEESC--HHHHHHHHHHHHHT
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHh-cCCCEEEEcCc--chHHHHHHHHHHHc
Confidence 455554 4332 234566677777876542 2 245556666665 46999998642 23466788888887
Q ss_pred CCcceEEEE
Q 048318 96 GIKIKIVGV 104 (145)
Q Consensus 96 ~~~~~iv~l 104 (145)
....|++..
T Consensus 217 g~~~~~~~~ 225 (346)
T 1usg_A 217 GLKTQFMGP 225 (346)
T ss_dssp TCCCEEEEC
T ss_pred CCCCeEEec
Confidence 667776543
No 398
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=62.88 E-value=22 Score=28.15 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=36.3
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEe
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d 77 (145)
..++|+|+|........+.+.|+..|+.+........ ... ..+|.||+.
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~-~~~DgIIls 493 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL-ARYDVVVMG 493 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG-GGCSEEEEC
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc-cCCCEEEEC
Confidence 3568999999999999999999999988776543221 112 358988884
No 399
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=62.83 E-value=17 Score=26.54 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 86 ~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+++++.+++..+ .+|||...+-.+.+.+.+++..||+.+.
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~ 325 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 478888887654 7999999999999999999999998874
No 400
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=62.77 E-value=36 Score=23.70 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 86 IEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.++++++++.. ++|+++=.+-.+.+....+ .|+|..++-
T Consensus 191 ~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 57888888754 7787644444557777775 899999753
No 401
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=62.75 E-value=30 Score=23.25 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=37.8
Q ss_pred CceEEEEeCcH---HHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCC
Q 048318 25 RLFALVVDDDC---FIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEM 80 (145)
Q Consensus 25 ~~~iLii~~~~---~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~ 80 (145)
.++++.-.+++ ...+.++..|++.|+.+. ...+.......+.. ..+|+.+..|..
T Consensus 129 ~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~~~~~~~~~~~~-~~~d~~~~~w~~ 187 (258)
T 3lvu_A 129 ALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKVDNAQYTARVAE-LDFDLTPFRRDL 187 (258)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEECHHHHHHHHHT-TCCSEEEEEEEC
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHhcc-CCccEEEecCCC
Confidence 44445444333 456788888999998877 44566666666665 579999998864
No 402
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=62.75 E-value=35 Score=23.56 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEecC-CCC-CCHHHHHHHHHhc-CCcceEEEEeCCCCHHH
Q 048318 37 IRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKE-MPV-MNGIEATREIRSM-GIKIKIVGVTSLNSEAE 112 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~-~~~-~~~~~~~~~l~~~-~~~~~iv~l~~~~~~~~ 112 (145)
....+.......|..+. .+.+.+++.+.+.. ..+|+|-++.. +.+ ...++....+... .++.++|.=++-.+.+.
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l-~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~ed 216 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFSV-IRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRE 216 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT-CCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGG
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHH
Confidence 34444445556788865 88899997776643 15888876642 221 1124444455443 33566666566667888
Q ss_pred HHHHHHhCCceeec-----CCCCHHHHHHH
Q 048318 113 REAFMQAGLDLCHT-----KPLSVDKILPL 137 (145)
Q Consensus 113 ~~~~~~~g~~~~l~-----kP~~~~~L~~~ 137 (145)
...+.+. ++.+++ |+-++.+....
T Consensus 217 v~~~~~~-a~avLVG~aimr~~d~~~~~~~ 245 (251)
T 1i4n_A 217 LKDLRGK-VNAVLVGTSIMKAENPRRFLEE 245 (251)
T ss_dssp HHHHTTT-CSEEEECHHHHHCSSHHHHHHH
T ss_pred HHHHHHh-CCEEEEcHHHcCCcCHHHHHHH
Confidence 9999999 999974 35555444433
No 403
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=62.51 E-value=33 Score=23.19 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=49.0
Q ss_pred EEcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 54 VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 54 ~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
=+.+..|+...+.. .+|++=+ .|.. .|.++++.++.-.+++|++.. ..-+.+...+++..|+...+
T Consensus 118 G~~TptE~~~A~~~--Gad~vK~---FPa~~~gG~~~lkal~~p~p~i~~~pt-GGI~~~N~~~~l~aGa~~~v 185 (217)
T 3lab_A 118 GVATASEVMIAAQA--GITQLKC---FPASAIGGAKLLKAWSGPFPDIQFCPT-GGISKDNYKEYLGLPNVICA 185 (217)
T ss_dssp EECSHHHHHHHHHT--TCCEEEE---TTTTTTTHHHHHHHHHTTCTTCEEEEB-SSCCTTTHHHHHHSTTBCCE
T ss_pred CCCCHHHHHHHHHc--CCCEEEE---CccccccCHHHHHHHHhhhcCceEEEe-CCCCHHHHHHHHHCCCEEEE
Confidence 46799999888765 4787744 4543 378999999987788888754 44456778899999986554
No 404
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=62.48 E-value=42 Score=24.41 Aligned_cols=87 Identities=8% Similarity=-0.051 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCeEE--EEcCHHHHHHHHHcCCCccEEEEecCC----C-CCCHHHHHHHHHhcCC-cceEEEEeCCCCH
Q 048318 39 TIHSMALKSLGFKVE--VAENGKEAVDLFRSGAKFDIVFIDKEM----P-VMNGIEATREIRSMGI-KIKIVGVTSLNSE 110 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~----~-~~~~~~~~~~l~~~~~-~~~iv~l~~~~~~ 110 (145)
+.++..-+..+..+. .+.+.+++...... ..|.|.+.-+- . ....++.+..+++..+ .+|++.-++-.+.
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~--Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~ 292 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH--GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 292 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT--TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc--CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCH
Confidence 334444444454443 35677777666554 58988884321 1 1256777888877443 7899988888899
Q ss_pred HHHHHHHHhCCceeecC
Q 048318 111 AEREAFMQAGLDLCHTK 127 (145)
Q Consensus 111 ~~~~~~~~~g~~~~l~k 127 (145)
..+.+++..||+.+..-
T Consensus 293 ~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 293 TDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHcCCCEEeec
Confidence 99999999999998643
No 405
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=62.46 E-value=31 Score=24.22 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=47.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcC-------------HH---HHHHHHHcCCCccEEEEecCCCCCCHH-H
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAEN-------------GK---EAVDLFRSGAKFDIVFIDKEMPVMNGI-E 87 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~-------------~~---~al~~~~~~~~~dlvl~d~~~~~~~~~-~ 87 (145)
+..+||.....-+-..+...|.+.|+.|..+.. .+ +..+.+.. ....+..+..++.+.+.. .
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~ 124 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE-QGRRIIARQADVRDLASLQA 124 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHH
Confidence 456888899999999999999889999885421 22 22333333 335666666666554443 4
Q ss_pred HHHHHHhcCCcceEEEE
Q 048318 88 ATREIRSMGIKIKIVGV 104 (145)
Q Consensus 88 ~~~~l~~~~~~~~iv~l 104 (145)
+++.+.+....+-+++-
T Consensus 125 ~~~~~~~~~g~iD~lVn 141 (317)
T 3oec_A 125 VVDEALAEFGHIDILVS 141 (317)
T ss_dssp HHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 55555544333334443
No 406
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=62.39 E-value=18 Score=25.80 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=11.4
Q ss_pred CHHHHHHHHHhCCceeecCCCC
Q 048318 109 SEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
+.+....++++|..-++-||+.
T Consensus 78 h~~~~~~al~aGk~Vl~EKP~a 99 (349)
T 3i23_A 78 HYDLAKQAILAGKSVIVEKPFC 99 (349)
T ss_dssp HHHHHHHHHHTTCEEEECSCSC
T ss_pred HHHHHHHHHHcCCEEEEECCCc
Confidence 3344455555555555555543
No 407
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=62.12 E-value=38 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=13.1
Q ss_pred CHHHHHHHHHhCCceeecCCCC
Q 048318 109 SEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
..+....+++.|..-++-||+.
T Consensus 76 h~~~~~~al~~Gk~V~~EKP~~ 97 (323)
T 1xea_A 76 HSTLAAFFLHLGIPTFVDKPLA 97 (323)
T ss_dssp HHHHHHHHHHTTCCEEEESCSC
T ss_pred HHHHHHHHHHCCCeEEEeCCCc
Confidence 3444556666676666667653
No 408
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=62.04 E-value=16 Score=26.66 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=55.5
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHc--CCeEE-EEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSL--GFKVE-VAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~--g~~v~-~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.++||.||+-. ........+... +++++ .++ +.+.+-+...+ .... +.-|++ + ++ . .+++
T Consensus 6 ~~~rv~VvG~G--~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~-~gv~-~~~~~~--~-----l~----~-~~D~ 69 (372)
T 4gmf_A 6 PKQRVLIVGAK--FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA-FGIP-LYTSPE--Q-----IT----G-MPDI 69 (372)
T ss_dssp -CEEEEEECST--TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH-TTCC-EESSGG--G-----CC----S-CCSE
T ss_pred CCCEEEEEehH--HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH-hCCC-EECCHH--H-----Hh----c-CCCE
Confidence 36788888875 233333344333 57766 444 33434444433 2222 222221 1 11 1 2344
Q ss_pred eEEEEeCCCC----HHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 100 KIVGVTSLNS----EAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 100 ~iv~l~~~~~----~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
-+|++..... .+....++++|..=++-||++.++..+.++.+-+
T Consensus 70 v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 70 ACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp EEECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 3333333333 5678888999999999999998888776665443
No 409
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=62.02 E-value=38 Score=23.73 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEcC---HH---HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 36 FIRTIHSMALKSLGFKVEVAEN---GK---EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~~~~---~~---~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
.....++..+++.||.+..+.. .+ +.++.+.. ..+|-+|+-... . ....++.++.. .+|+|++
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdGiIi~~~~--~-~~~~~~~l~~~--~iPvV~i 153 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLS-WRPSGVIIAGLE--H-SEAARAMLDAA--GIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHT-TCCSEEEEECSC--C-CHHHHHHHHHC--SSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEECCC--C-CHHHHHHHHhC--CCCEEEE
Confidence 3445666667777888775432 22 23444444 468877764221 1 22455555543 4666666
No 410
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=61.95 E-value=36 Score=23.49 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=44.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CC----------eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GF----------KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GI 86 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~----------~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~ 86 (145)
..+|..+|-++...+..+..+ .. ++ .+. ...+..+.+.. . ..||+|++|...+... ..
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~-~~fD~Ii~d~~~~~~~~~~l~~~ 173 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N-RGFDVIIADSTDPVGPAKVLFSE 173 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C-CCEEEEEEECCCCC-----TTSH
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c-CCeeEEEECCCCCCCcchhhhHH
Confidence 357899999999999888877 32 22 344 55677766554 3 5799999997543211 25
Q ss_pred HHHHHHHhc
Q 048318 87 EATREIRSM 95 (145)
Q Consensus 87 ~~~~~l~~~ 95 (145)
++++.+++.
T Consensus 174 ~~l~~~~~~ 182 (281)
T 1mjf_A 174 EFYRYVYDA 182 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 667776653
No 411
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=61.94 E-value=37 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=39.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe---EE-EEcCHHHHHHHHH-cCCCccEEEEec
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK---VE-VAENGKEAVDLFR-SGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~~~~-~~~~~dlvl~d~ 78 (145)
.+|..+|-++...+..+..++..|+. +. ...+..+.+.... ....||+|++|.
T Consensus 176 a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 176 AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 37899999999999999988877653 44 5567777665432 124699999975
No 412
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=61.91 E-value=33 Score=23.02 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=41.2
Q ss_pred CCccEEEEecCC-CCCCHHHHHHHHHhc-CCcceEEEEeCCCCHHHHHHHHHhCCc
Q 048318 69 AKFDIVFIDKEM-PVMNGIEATREIRSM-GIKIKIVGVTSLNSEAEREAFMQAGLD 122 (145)
Q Consensus 69 ~~~dlvl~d~~~-~~~~~~~~~~~l~~~-~~~~~iv~l~~~~~~~~~~~~~~~g~~ 122 (145)
...|.|-..... ++...++.++.+++. ...+||+...+-.+.....+.+..|++
T Consensus 144 aGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 144 AGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp HTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred hCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCch
Confidence 358888665543 233467888888764 347899999988999999999999998
No 413
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=61.79 E-value=36 Score=23.42 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=26.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE 56 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~ 56 (145)
+++|||......+...+...|.+.|++|....
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 45789999999999888888888898887543
No 414
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=61.56 E-value=35 Score=23.23 Aligned_cols=67 Identities=6% Similarity=-0.011 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcC-----HH---HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVEVAEN-----GK---EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~-----~~---~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
....++..+++.||.+..+.. .+ +.++.+.. ..+|.|++....++ .....++.+++. .+|+|.+...
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~-~~~~~~~~~~~~--giPvV~~~~~ 95 (297)
T 3rot_A 21 LFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDT-AFSKSLQRANKL--NIPVIAVDTR 95 (297)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSS-TTHHHHHHHHHH--TCCEEEESCC
T ss_pred HHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHH-HHHHHHHHHHHC--CCCEEEEcCC
Confidence 345566667778999886552 22 34444445 46998887533221 224556666654 5677776544
No 415
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=61.29 E-value=36 Score=23.23 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=40.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 72 DIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 72 dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
.+|.++. .......++++++++....+|+++=..-.+.+.+..+++ |||..++-
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 7888887 444456889999998654678875555577888888888 99998764
No 416
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=61.28 E-value=38 Score=23.81 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=42.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH--cCC---eEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS--LGF---KVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIR 93 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~--~g~---~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~ 93 (145)
..+|..+|-++...+..+..+.. .|+ .+. ...+..+.+... . ..||+|++|...+... ..++++.++
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~ 196 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-Q-DAFDVIITDSSDPMGPAESLFKESYYQLMK 196 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-S-SCEEEEEEECC-----------CHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-C-CCceEEEECCCCCCCcchhhhHHHHHHHHH
Confidence 35789999999999999888764 222 344 556776655432 2 4699999997544221 234666665
Q ss_pred h
Q 048318 94 S 94 (145)
Q Consensus 94 ~ 94 (145)
+
T Consensus 197 ~ 197 (304)
T 2o07_A 197 T 197 (304)
T ss_dssp H
T ss_pred h
Confidence 5
No 417
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=61.25 E-value=44 Score=24.24 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=40.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHH-cCCCccEEEEec
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFR-SGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~-~~~~~dlvl~d~ 78 (145)
.+|.-+|-++...+..+..++..|+. +. ...+..+.+..+. ....||+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 46899999999999999998877754 43 6667777665443 124699999985
No 418
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=61.24 E-value=42 Score=23.94 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=46.7
Q ss_pred ceEEEEeC--cHHH---HHHHHHHHHHcCCeEEE---Ec----CHHHHHHH--HHcCCCccEEEEecCCCCCCHHHHHHH
Q 048318 26 LFALVVDD--DCFI---RTIHSMALKSLGFKVEV---AE----NGKEAVDL--FRSGAKFDIVFIDKEMPVMNGIEATRE 91 (145)
Q Consensus 26 ~~iLii~~--~~~~---~~~l~~~L~~~g~~v~~---~~----~~~~al~~--~~~~~~~dlvl~d~~~~~~~~~~~~~~ 91 (145)
.+|.++.+ +..- .+.++..+++.|..+.. +. +....+.. +.. ..||+|++... ..+...+++.
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~-~~~dav~~~~~--~~~~~~~~~~ 218 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLA-ADPDYVWCGNT--ISSCSLLGRA 218 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHT-TCCSEEEECSC--HHHHHHHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHH-cCCCEEEEecC--cHHHHHHHHH
Confidence 45655544 4332 34566667777876542 21 34455666 665 57999998543 2345677788
Q ss_pred HHhcCCcceEEEEe
Q 048318 92 IRSMGIKIKIVGVT 105 (145)
Q Consensus 92 l~~~~~~~~iv~l~ 105 (145)
+++.....|++...
T Consensus 219 ~~~~g~~~~~~~~~ 232 (391)
T 3eaf_A 219 MAKVGLDAFLLTNV 232 (391)
T ss_dssp HHHHTCCCEEEECG
T ss_pred HHHCCCCceEEEec
Confidence 88877777876443
No 419
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=61.21 E-value=39 Score=23.63 Aligned_cols=64 Identities=11% Similarity=-0.037 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCeEEEEcC-----HHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeC
Q 048318 38 RTIHSMALKSLGFKVEVAEN-----GKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTS 106 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~-----~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~ 106 (145)
...++...+..||.+..+.+ ..+.++.+.. ..+|.||+--. .. ... +..+....|++|+|++..
T Consensus 26 ~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~-~~~dgIi~~~~--~~-~~~-~~~~a~~~p~~p~v~id~ 94 (318)
T 2fqx_A 26 WEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD-ENMGLVVACGS--FL-VEA-VIETSARFPKQKFLVIDA 94 (318)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH-TTCSEEEEEST--TT-HHH-HHHHHHHCTTSCEEEESS
T ss_pred HHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH-cCCCEEEECCh--hH-HHH-HHHHHHHCCCCEEEEEcC
Confidence 35666667778998775432 2344555555 46998887421 11 112 334444456788887764
No 420
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=61.02 E-value=35 Score=23.00 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=47.7
Q ss_pred HHHHcCCe-EEEEcCHHHHHHHH---HcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh
Q 048318 44 ALKSLGFK-VEVAENGKEAVDLF---RSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA 119 (145)
Q Consensus 44 ~L~~~g~~-v~~~~~~~~al~~~---~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~ 119 (145)
.|...+.. |....+.+++++.. .. ...+++=+.+. ..++.+.++.+++..++..+- .......+....++..
T Consensus 13 ~l~~~~ii~vir~~~~~~~~~~~~al~~-gGv~~iel~~k--~~~~~~~i~~l~~~~~~l~vg-aGtvl~~d~~~~A~~a 88 (224)
T 1vhc_A 13 KLRELKIVPVIALDNADDILPLADTLAK-NGLSVAEITFR--SEAAADAIRLLRANRPDFLIA-AGTVLTAEQVVLAKSS 88 (224)
T ss_dssp HHHHHCEEEEECCSSGGGHHHHHHHHHH-TTCCEEEEETT--STTHHHHHHHHHHHCTTCEEE-EESCCSHHHHHHHHHH
T ss_pred HHHHCCeEEEEeCCCHHHHHHHHHHHHH-cCCCEEEEecc--CchHHHHHHHHHHhCcCcEEe-eCcEeeHHHHHHHHHC
Confidence 34444532 33445555554433 33 34666655543 456788888887766654322 2333466778888899
Q ss_pred CCceeecCCCC
Q 048318 120 GLDLCHTKPLS 130 (145)
Q Consensus 120 g~~~~l~kP~~ 130 (145)
|++.++.--.+
T Consensus 89 GAd~v~~p~~d 99 (224)
T 1vhc_A 89 GADFVVTPGLN 99 (224)
T ss_dssp TCSEEECSSCC
T ss_pred CCCEEEECCCC
Confidence 99887653333
No 421
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=61.00 E-value=15 Score=24.86 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=46.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc---CCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS---GAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~---~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
..+|..+|-++...+..+..++..|.. +. ...+..+.+..+.. ...||+|++|... .+-..+++.+..
T Consensus 85 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~ 158 (242)
T 3r3h_A 85 DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK--TNYLNYYELALK 158 (242)
T ss_dssp TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG--GGHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh--HHhHHHHHHHHH
Confidence 357899999998888888888877652 44 56677776665421 1469999999752 233455555544
No 422
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=60.98 E-value=34 Score=22.89 Aligned_cols=79 Identities=20% Similarity=0.053 Sum_probs=47.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv 102 (145)
+.++||.....-+-..+...|.+.|+.|..+. +.+.+.+.... ....+..+..++.+.+. ..+++.+.+....+-++
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 84 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAAS-IGKKARAIAADISDPGSVKALFAEIQALTGGIDIL 84 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence 45688888888888888889988999988554 44333333222 22455555555555443 34556665543334444
Q ss_pred EE
Q 048318 103 GV 104 (145)
Q Consensus 103 ~l 104 (145)
+-
T Consensus 85 v~ 86 (247)
T 3rwb_A 85 VN 86 (247)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 423
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=60.86 E-value=19 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=39.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc--CC-eEE-EEcCHHHHHHHHHcCCCccEEEEec
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL--GF-KVE-VAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~--g~-~v~-~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
..+|.-+|-++...+..+..++.. |. .+. ...+..+.+..... ..||+|++|-
T Consensus 115 g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~-~~fDvV~lDP 171 (410)
T 3ll7_A 115 ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKT-FHPDYIYVDP 171 (410)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHH-HCCSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccC-CCceEEEECC
Confidence 357999999999999999999877 75 344 55676665554332 3699999984
No 424
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=60.68 E-value=19 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHHH
Q 048318 107 LNSEAEREAFMQAGLDLCHTKPLS--VDKILPLMED 140 (145)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~ 140 (145)
....+....++++|..-++-||+. .++..+.++.
T Consensus 78 ~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~ 113 (329)
T 3evn_A 78 QDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFAL 113 (329)
T ss_dssp GGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHH
Confidence 345566777888888888888854 4555444443
No 425
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=60.47 E-value=36 Score=22.97 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEcC---HH---HHHHHHHcCCCccEEEEecCCCC--CCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 36 FIRTIHSMALKSLGFKVEVAEN---GK---EAVDLFRSGAKFDIVFIDKEMPV--MNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 36 ~~~~~l~~~L~~~g~~v~~~~~---~~---~al~~~~~~~~~dlvl~d~~~~~--~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
.....++..+++.||.+..+.. .+ +.++.+.. ..+|.+++-..... ....+.++.+++. .+|+|++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~~~~~~~~~--~iPvV~~~~~ 108 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS-QHIDGLIVEPTKSALQTPNIGYYLNLEKN--GIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEECCSSTTSCCTTHHHHHHHHHT--TCCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH-CCCCEEEEecccccccCCcHHHHHHHHhc--CCCEEEEecC
Confidence 3456666677778888775542 22 23444444 46887777543221 1234566666553 5677766543
No 426
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=60.44 E-value=48 Score=24.36 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHc-CCeEE--EEcCHHHHHHHHHcCCCccEEEEecC-----------CCCCCHHHHHHHHHhc--CCcce
Q 048318 37 IRTIHSMALKSL-GFKVE--VAENGKEAVDLFRSGAKFDIVFIDKE-----------MPVMNGIEATREIRSM--GIKIK 100 (145)
Q Consensus 37 ~~~~l~~~L~~~-g~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~-----------~~~~~~~~~~~~l~~~--~~~~~ 100 (145)
..+.++..-+.. +..+. .+.+.+++..... ...|.|.+... -.+...++.+..+++. ...+|
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~--~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ip 258 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNIC 258 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT--TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCE
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh--cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCce
Confidence 333443333333 55554 4667777766554 45899888321 0123345666666552 23789
Q ss_pred EEEEeCCCCHHHHHHHHHhCCceeec
Q 048318 101 IVGVTSLNSEAEREAFMQAGLDLCHT 126 (145)
Q Consensus 101 iv~l~~~~~~~~~~~~~~~g~~~~l~ 126 (145)
++..+.-.+...+..++..||+.+..
T Consensus 259 Via~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 259 IIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp EEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 98888888899999999999998854
No 427
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=60.42 E-value=42 Score=23.74 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHcCCe-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCC---------CH---HHHHH----HHHhcCCcceEEEEe-CC
Q 048318 46 KSLGFK-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVM---------NG---IEATR----EIRSMGIKIKIVGVT-SL 107 (145)
Q Consensus 46 ~~~g~~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~---------~~---~~~~~----~l~~~~~~~~iv~l~-~~ 107 (145)
++.|.. +.++.+.+++...... .||+|.+...+... +- .+.++ ..++..|++.++.-+ .-
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~a--gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpI 237 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKA--GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPI 237 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHH--TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTC
T ss_pred HHCCCeEEEecCCHHHHHHHHHc--CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 356755 5599999999988765 59999998764321 11 22333 333456676554444 33
Q ss_pred CCHHHHHHHHHh--CCceeec
Q 048318 108 NSEAEREAFMQA--GLDLCHT 126 (145)
Q Consensus 108 ~~~~~~~~~~~~--g~~~~l~ 126 (145)
.+.+....+++. |+++|+.
T Consensus 238 stpeDv~~~l~~t~G~~G~~g 258 (286)
T 2p10_A 238 ANPEDARFILDSCQGCHGFYG 258 (286)
T ss_dssp CSHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCccEEEe
Confidence 688889999998 9999974
No 428
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=60.36 E-value=47 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=21.7
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKSLGFKVEVAE 56 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~ 56 (145)
+.++|||++.... ...+...+++.|+.+..+.
T Consensus 18 ~~~~ili~g~g~~-g~~~~~a~~~~G~~v~~v~ 49 (433)
T 2dwc_A 18 SAQKILLLGSGEL-GKEIAIEAQRLGVEVVAVD 49 (433)
T ss_dssp TCCEEEEESCSHH-HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEE
Confidence 3568999988754 4445556677899877443
No 429
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=60.36 E-value=45 Score=24.05 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHcCCCccEEEEecCCC-----C-------CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 61 AVDLFRSGAKFDIVFIDKEMP-----V-------MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 61 al~~~~~~~~~dlvl~d~~~~-----~-------~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
..+.+.+ ...|.|.+.-... + .-.+++++.+++..+.+||++-.+-.+.+...+++. |+|.+.
T Consensus 149 ~a~~l~~-aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 149 SVEAMAE-AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HHHHHHH-TTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HHHHHHH-cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 3344444 4578777754211 0 114788889988766889998887788888888887 888764
No 430
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=60.14 E-value=28 Score=21.56 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=45.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh-cCCcceE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS-MGIKIKI 101 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~-~~~~~~i 101 (145)
..++..+|-++...+..+..+...|.. +....+..+.+... ...||+|++...+.. ..+++.+.+ ..+.-.+
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l 123 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDV--PDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRL 123 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGC--CSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhcc--CCCCCEEEECCcccH---HHHHHHHHHhcCCCCEE
Confidence 457899999999999999988877653 44334443322211 146999999876654 445555554 3344344
Q ss_pred EE
Q 048318 102 VG 103 (145)
Q Consensus 102 v~ 103 (145)
++
T Consensus 124 ~~ 125 (178)
T 3hm2_A 124 VA 125 (178)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 431
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=60.12 E-value=12 Score=26.11 Aligned_cols=53 Identities=2% Similarity=0.011 Sum_probs=33.2
Q ss_pred CCceEEEEeCcHHHHHHHHHHHHH--cCCeEEEEc-CHHHHHHHHHcCCCccEEEEe
Q 048318 24 LRLFALVVDDDCFIRTIHSMALKS--LGFKVEVAE-NGKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~~--~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d 77 (145)
..++||++..+.......+.+-.. .++.+.+.. +.++.++.+.. ..||++++-
T Consensus 29 ~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~~-~~pDliv~~ 84 (260)
T 1zgh_A 29 GLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKL-INPEYILFP 84 (260)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHHHH-HCCSEEEES
T ss_pred CceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHh-cCCCEEEEe
Confidence 467899998877766555544332 467776554 33345666666 579988864
No 432
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=60.03 E-value=42 Score=23.64 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred eEEEEeCcHHHHH----HHHHHHHHcCC--eE-EEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcc
Q 048318 27 FALVVDDDCFIRT----IHSMALKSLGF--KV-EVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKI 99 (145)
Q Consensus 27 ~iLii~~~~~~~~----~l~~~L~~~g~--~v-~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~ 99 (145)
.+||.++|-...- .++..-+..+. .+ ..+.+.+++.+.+.. ..|.|.+|--.+ .++-+..+....++
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a--GaD~I~ld~~~~----~~~k~av~~v~~~i 241 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA--GADLILLDNFPL----EALREAVRRVGGRV 241 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH--TCSEEEEESCCH----HHHHHHHHHHTTSS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc--CCCEEEECCCCH----HHHHHHHHHhCCCC
Confidence 3677777765432 23322223343 23 377889999888865 489999996322 22212222222356
Q ss_pred eEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 100 KIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 100 ~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
|+++ ++.-+.+.+.+....|+|.+-
T Consensus 242 pi~A-sGGIt~eni~~~a~tGvD~Is 266 (286)
T 1x1o_A 242 PLEA-SGNMTLERAKAAAEAGVDYVS 266 (286)
T ss_dssp CEEE-ESSCCHHHHHHHHHHTCSEEE
T ss_pred eEEE-EcCCCHHHHHHHHHcCCCEEE
Confidence 7765 666678888899999998874
No 433
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=59.38 E-value=57 Score=24.94 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=61.0
Q ss_pred CceEEEEeCc----HHHHHHHHHHHHHcC-CeEE--EEcCHHHHHHHHHcCCCccEEEEecCCCC-----------CCHH
Q 048318 25 RLFALVVDDD----CFIRTIHSMALKSLG-FKVE--VAENGKEAVDLFRSGAKFDIVFIDKEMPV-----------MNGI 86 (145)
Q Consensus 25 ~~~iLii~~~----~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~~~~~~~~dlvl~d~~~~~-----------~~~~ 86 (145)
+..+++++.. ....+.++..-+..+ ..+. .+.+.+++...... ..|.|.++..-.. ...+
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a--Gad~i~vg~g~gsi~~~~~~~g~g~p~~ 345 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA--GANVVKVGIGPGSICTTRVVAGVGVPQL 345 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH--TCSEEEECSSCSTTCCHHHHHCCCCCHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh--CCCEEEECCCCccccccccccCCCCCcH
Confidence 3456666532 222333433333333 3333 56678887777665 4788887542211 3345
Q ss_pred HHHHHHHhc--CCcceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 87 EATREIRSM--GIKIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 87 ~~~~~l~~~--~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
..+..+.+. ...+|+|+-.+-.+...+..++..||+....-
T Consensus 346 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 346 TAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 555554331 22589988888889999999999999998643
No 434
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=59.35 E-value=47 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhCCceeecCCC
Q 048318 109 SEAEREAFMQAGLDLCHTKPL 129 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~kP~ 129 (145)
+.+....++++|..=++-||+
T Consensus 96 h~~~~~~al~~Gk~V~~EKP~ 116 (383)
T 3oqb_A 96 RPGLLTQAINAGKHVYCEKPI 116 (383)
T ss_dssp SHHHHHHHHTTTCEEEECSCS
T ss_pred HHHHHHHHHHCCCeEEEcCCC
Confidence 444455555555555555554
No 435
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=59.20 E-value=43 Score=23.45 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCc---ceEEEEeCC
Q 048318 38 RTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIK---IKIVGVTSL 107 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~---~~iv~l~~~ 107 (145)
.+.++..++..|..+.. + .+....+..+.. ..||+|++... +.....+++.+++.... +|++.....
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~~g~~~~~v~~~~~~~~ 232 (368)
T 4eyg_A 156 LAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFVP--AGQGGNFMKQFAERGLDKSGIKVIGPGDV 232 (368)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEECC--TTCHHHHHHHHHHTTGGGTTCEEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEecc--chHHHHHHHHHHHcCCCcCCceEEecCcc
Confidence 45667777788877542 2 256667777765 46999999543 34788899999886544 566544323
Q ss_pred CCHHH
Q 048318 108 NSEAE 112 (145)
Q Consensus 108 ~~~~~ 112 (145)
.+...
T Consensus 233 ~~~~~ 237 (368)
T 4eyg_A 233 MDDDL 237 (368)
T ss_dssp TCHHH
T ss_pred cCHHH
Confidence 44443
No 436
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.15 E-value=27 Score=22.50 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=39.0
Q ss_pred CccEEEEecC-CCCCCHHH-HHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHh
Q 048318 70 KFDIVFIDKE-MPVMNGIE-ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 70 ~~dlvl~d~~-~~~~~~~~-~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 143 (145)
.+.++++|-- .-+.+..+ +++.+......+.+|+.+... .. ....+...+..+-.+|++.+++...+...+.
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~-~~-~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP-QK-LPVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG-GG-SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh-Hh-CCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 3678888842 11222233 334444333355555555432 22 2223334455666789999998888876653
No 437
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=59.03 E-value=44 Score=23.53 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcC---HH---HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEE
Q 048318 37 IRTIHSMALKSLGFKVEVAEN---GK---EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGV 104 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~---~~---~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l 104 (145)
....++..++..||.+..+.+ .+ +.++.+.. ..+|-+|+-... ...+.++.+... .+|+|++
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~---~~~~~~~~l~~~--~iPvV~i 155 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR-RRPEAMVLSYDG---HTEQTIRLLQRA--SIPIVEI 155 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEEECSC---CCHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCC---CCHHHHHHHHhC--CCCEEEE
Confidence 445666667778999875542 22 33444444 468877764221 122445555543 4666666
No 438
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=58.99 E-value=45 Score=23.63 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCcceEE--EEeCCCCHHHHHHHHHhCCceeec-----CCCCHHHHHHHHHHHHh
Q 048318 85 GIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCHT-----KPLSVDKILPLMEDLMK 143 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv--~l~~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~~ 143 (145)
.+++++++++.. ++|++ .-++-.+......++..|++.++. |.-++.+....+...+.
T Consensus 195 ~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~ 259 (297)
T 4adt_A 195 PIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS 259 (297)
T ss_dssp CHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH
Confidence 356677777643 45665 344445888999999999999964 45566666666655543
No 439
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=58.91 E-value=20 Score=24.22 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred HHHHHcCCeEE-EE--cCHHHHHHHHHcCCCccEEEEecCCCC-------CCHHHHHHHHHhcC----CcceEEEEeCCC
Q 048318 43 MALKSLGFKVE-VA--ENGKEAVDLFRSGAKFDIVFIDKEMPV-------MNGIEATREIRSMG----IKIKIVGVTSLN 108 (145)
Q Consensus 43 ~~L~~~g~~v~-~~--~~~~~al~~~~~~~~~dlvl~d~~~~~-------~~~~~~~~~l~~~~----~~~~iv~l~~~~ 108 (145)
+.++..|..+- .+ .+..+.++.+.. ..|.|++-.-.|+ ..+.+.++++++.. .+.||.+-.+-.
T Consensus 106 ~~i~~~g~~~gv~~~p~t~~e~~~~~~~--~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~ 183 (230)
T 1tqj_A 106 CQIRELGKKAGAVLNPSTPLDFLEYVLP--VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 183 (230)
T ss_dssp HHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC
T ss_pred HHHHHcCCcEEEEEeCCCcHHHHHHHHh--cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcC
Confidence 34445565544 33 344444444433 3677766655554 13467777777643 267777655444
Q ss_pred CHHHHHHHHHhCCceeec-----CCCCHHHHHHHHHH
Q 048318 109 SEAEREAFMQAGLDLCHT-----KPLSVDKILPLMED 140 (145)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~ 140 (145)
.+....+.++|+|.++. +.-++.+-.+.+++
T Consensus 184 -~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~l~~ 219 (230)
T 1tqj_A 184 -PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRN 219 (230)
T ss_dssp -TTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred -HHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHH
Confidence 46677788899999864 33345555554443
No 440
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=58.85 E-value=33 Score=23.74 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcceEEEEeCC------CCHHHHHHHHHhCCceeecCCCCHHH
Q 048318 87 EATREIRSMGIKIKIVGVTSL------NSEAEREAFMQAGLDLCHTKPLSVDK 133 (145)
Q Consensus 87 ~~~~~l~~~~~~~~iv~l~~~------~~~~~~~~~~~~g~~~~l~kP~~~~~ 133 (145)
++++.+++....+|+++++-. .-+....++.++|+++++.--+.+++
T Consensus 77 ~~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE 129 (252)
T 3tha_A 77 SVFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEE 129 (252)
T ss_dssp HHHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGG
T ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 334444443334788776542 34455777788888888776444444
No 441
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=58.67 E-value=51 Score=24.15 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=57.1
Q ss_pred CceEEEEeCc--HHH---HHHHHHHHHHcCCeEEEEcCHHHHHHHHHc--------------------CCCccEEEEecC
Q 048318 25 RLFALVVDDD--CFI---RTIHSMALKSLGFKVEVAENGKEAVDLFRS--------------------GAKFDIVFIDKE 79 (145)
Q Consensus 25 ~~~iLii~~~--~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--------------------~~~~dlvl~d~~ 79 (145)
..+|+|+... +.. ...+...|...|+.|..-....+.+..... ...+|+|++
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~--- 114 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC--- 114 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE---
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE---
Confidence 4478888653 233 355555666779888765544443221100 124677665
Q ss_pred CCCCCHHHHHHHHHh-cCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 80 MPVMNGIEATREIRS-MGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 80 ~~~~~~~~~~~~l~~-~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
-++||. ++...+. ....+||+-+.. |--+||. +++++++...+.+++++
T Consensus 115 -lGGDGT-~L~aa~~~~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 115 -LGGDGT-LLYASSLFQGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEG 164 (365)
T ss_dssp -ESSTTH-HHHHHHHCSSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHS
T ss_pred -EcChHH-HHHHHHHhccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcC
Confidence 256663 2233332 223567776643 5556765 77778888888887765
No 442
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=58.67 E-value=51 Score=24.09 Aligned_cols=77 Identities=13% Similarity=-0.000 Sum_probs=50.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc---------------CCe-EE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL---------------GFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~---------------g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~ 88 (145)
.+|..+|-++...+.++..++.+ |.. +. ...|..+.+... . ..||+|++|- + .+..++
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~-~-~~fD~I~lDP--~-~~~~~~ 146 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER-H-RYFHFIDLDP--F-GSPMEF 146 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS-T-TCEEEEEECC--S-SCCHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc-c-CCCCEEEeCC--C-CCHHHH
Confidence 46899999999999999999877 754 44 556777665543 2 3699999874 2 344566
Q ss_pred HHHHHhcCCcceEEEEeCC
Q 048318 89 TREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 89 ~~~l~~~~~~~~iv~l~~~ 107 (145)
+....+...+-.++.++..
T Consensus 147 l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 147 LDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHhcCCCCEEEEEee
Confidence 6544332112235556543
No 443
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=58.52 E-value=45 Score=23.48 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=46.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH--cC----CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCC---CC-----HHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS--LG----FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPV---MN-----GIEAT 89 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~--~g----~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~---~~-----~~~~~ 89 (145)
..+|..+|-++...+..+..+.. .| -.+. ...+..+.+... . ..||+|++|...+. .. ..+++
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~-~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l 178 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-E-ERYDVVIIDLTDPVGEDNPARLLYTVEFY 178 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-C-CCEEEEEEECCCCBSTTCGGGGGSSHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-C-CCccEEEECCCCcccccCcchhccHHHHH
Confidence 35789999999999998887754 12 2344 566777665442 2 46999999976554 21 25677
Q ss_pred HHHHhc
Q 048318 90 REIRSM 95 (145)
Q Consensus 90 ~~l~~~ 95 (145)
+.+++.
T Consensus 179 ~~~~~~ 184 (314)
T 1uir_A 179 RLVKAH 184 (314)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777663
No 444
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=58.30 E-value=39 Score=22.65 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=38.3
Q ss_pred HHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 63 ~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
+.+.. .+||+||...... ..+..+++++. .+|++++....+.....+.++.= -..+-++-..+++...+++.+
T Consensus 53 E~i~~-l~PDlIi~~~~~~---~~~~~~~L~~~--gipvv~~~~~~~~~~~~~~i~~l-g~~~g~~~~A~~l~~~~~~~~ 125 (255)
T 3md9_A 53 EGILA-MKPTMLLVSELAQ---PSLVLTQIASS--GVNVVTVPGQTTPESVAMKINAV-ATALHQTEKGQKLIEDYQQRL 125 (255)
T ss_dssp HHHHT-TCCSEEEEETTCS---CHHHHHHHHHT--TCEEEEECCCCSHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHc-cCCCEEEEcCCcC---chhHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHH
Confidence 44444 5799999875431 23456677654 46787775444444333333221 123344544556665555443
No 445
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=58.21 E-value=47 Score=23.54 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=55.7
Q ss_pred EEEEeCcHHH----HHHHHHHHHHcCC-e-EEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceE
Q 048318 28 ALVVDDDCFI----RTIHSMALKSLGF-K-VEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKI 101 (145)
Q Consensus 28 iLii~~~~~~----~~~l~~~L~~~g~-~-v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 101 (145)
+++-|++-.. .+.++..-+..+. . ...+.+.+++.+.+.. ..|.|.+|- ++-.++.+..+.....+++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a--GaD~I~ld~----~~~e~l~~~v~~~~~~~~I 255 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA--GADIIMLDN----FNTDQMREAVKRVNGQARL 255 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT--TCSEEEESS----CCHHHHHHHHHTTCTTCCE
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc--CCCEEEECC----CCHHHHHHHHHHhCCCCeE
Confidence 4555555544 3344443333444 3 4478888888887764 489999984 3333333333333345666
Q ss_pred EEEeCCCCHHHHHHHHHhCCceee
Q 048318 102 VGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 102 v~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
. .++.-+.+.+......|+|.+-
T Consensus 256 ~-ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 256 E-VSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp E-ECCCSCHHHHHHHHHTTCSEEE
T ss_pred E-EECCCCHHHHHHHHHcCCCEEE
Confidence 5 4556688889999999997663
No 446
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=58.17 E-value=42 Score=23.00 Aligned_cols=79 Identities=9% Similarity=0.015 Sum_probs=47.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHH-HHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVD-LFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~-~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv 102 (145)
+.++||.....-+-..+...|.+.|+.|..+....+.++ .... ....+..+..++.+.+. ..+++.+.+....+-++
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE-IGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL 105 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 457899999999999999999899999885543333333 3322 22345555555555443 33455555433333344
Q ss_pred EE
Q 048318 103 GV 104 (145)
Q Consensus 103 ~l 104 (145)
+-
T Consensus 106 v~ 107 (277)
T 4dqx_A 106 VN 107 (277)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 447
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=58.07 E-value=23 Score=22.90 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=22.0
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAE 56 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~ 56 (145)
|+|||......+-..+...|...|++|....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV 31 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEE
Confidence 3577888777777777777777787777433
No 448
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=57.96 E-value=31 Score=26.09 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=38.2
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
-+|.-+|-++...+.++..++..|..+. ...+..+..... . ..||+|++|.
T Consensus 127 g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~-~-~~FD~Il~D~ 178 (464)
T 3m6w_A 127 GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF-G-TYFHRVLLDA 178 (464)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH-C-SCEEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc-c-ccCCEEEECC
Confidence 3688999999999999999998887644 344665544333 3 4699999985
No 449
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=57.81 E-value=39 Score=22.59 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCeEEEEcCH---H---HHHHHHHcCCCccEEEEecCCCCCCHHHHHH-HHHhcCCcceEEEEeCC
Q 048318 38 RTIHSMALKSLGFKVEVAENG---K---EAVDLFRSGAKFDIVFIDKEMPVMNGIEATR-EIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~~---~---~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~-~l~~~~~~~~iv~l~~~ 107 (145)
...++..+++.||.+..+... + +.++.+.. ..+|.|++-. ...+.++ .+++. .+|+|++...
T Consensus 27 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~dgiIi~~-----~~~~~~~~~l~~~--~iPvV~~~~~ 95 (277)
T 3e61_A 27 ARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVS-HNCTGMISTA-----FNENIIENTLTDH--HIPFVFIDRI 95 (277)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECG-----GGHHHHHHHHHHC---CCEEEGGGC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEec-----CChHHHHHHHHcC--CCCEEEEecc
Confidence 345555666778887754422 1 23444545 4689888743 1234455 56553 5677766544
No 450
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=57.72 E-value=26 Score=25.04 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHcCCCccEEEEecC----------------------C-CCCCHHHHHHHHHhcCCcceEEEEeCCCCHHH
Q 048318 56 ENGKEAVDLFRSGAKFDIVFIDKE----------------------M-PVMNGIEATREIRSMGIKIKIVGVTSLNSEAE 112 (145)
Q Consensus 56 ~~~~~al~~~~~~~~~dlvl~d~~----------------------~-~~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~ 112 (145)
.+.+++.... + ...|.|.++-+ . .+...++.+..+++....+|++..+.-.+...
T Consensus 193 ~~~e~a~~~~-~-~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d 270 (332)
T 1vcf_A 193 LSREAALALR-D-LPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTD 270 (332)
T ss_dssp CCHHHHHHHT-T-SCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHH
T ss_pred CCHHHHHHHH-H-cCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHH
Confidence 4666665443 3 45888887432 1 12345677777777554789999999999999
Q ss_pred HHHHHHhCCceeec-CCC
Q 048318 113 REAFMQAGLDLCHT-KPL 129 (145)
Q Consensus 113 ~~~~~~~g~~~~l~-kP~ 129 (145)
+.+++..||+.+.. .|+
T Consensus 271 ~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 271 GAKALALGADLLAVARPL 288 (332)
T ss_dssp HHHHHHHTCSEEEECGGG
T ss_pred HHHHHHhCCChHhhhHHH
Confidence 99999999998743 353
No 451
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=57.54 E-value=41 Score=22.72 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=42.3
Q ss_pred CHHHHHHHHHcCCCccEEEEecCCC--CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 57 NGKEAVDLFRSGAKFDIVFIDKEMP--VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~d~~~~--~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
+.+++.+.... ..|.|+++...- ...-.++++.+++. .. .++.+-.+.++...+.+.|++.+.
T Consensus 90 ~~~~i~~~~~~--Gad~V~l~~~~~~~p~~l~~~i~~~~~~--g~--~v~~~v~t~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 90 FLDDVDALAQA--GAAIIAVDGTARQRPVAVEALLARIHHH--HL--LTMADCSSVDDGLACQRLGADIIG 154 (232)
T ss_dssp SHHHHHHHHHH--TCSEEEEECCSSCCSSCHHHHHHHHHHT--TC--EEEEECCSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHHc--CCCEEEECccccCCHHHHHHHHHHHHHC--CC--EEEEeCCCHHHHHHHHhCCCCEEE
Confidence 44555554443 489999997641 23456777887764 33 334566788888999999998774
No 452
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=57.39 E-value=44 Score=23.03 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=48.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCC--CHHH----HHHHHHhCCceee-----cCCCCHHHHHHH
Q 048318 69 AKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN--SEAE----REAFMQAGLDLCH-----TKPLSVDKILPL 137 (145)
Q Consensus 69 ~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~--~~~~----~~~~~~~g~~~~l-----~kP~~~~~L~~~ 137 (145)
...|.|=+.. + .+.+.++.+++..+.+|+++..+-. +.+. ...++++|+++.. .+.-++....+.
T Consensus 171 ~GAD~vkt~~--~--~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~~~~ 246 (263)
T 1w8s_A 171 LGADAMKIKY--T--GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARA 246 (263)
T ss_dssp HTCSEEEEEC--C--SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHH
T ss_pred cCCCEEEEcC--C--CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHHHHH
Confidence 3579888884 3 2667778887765445888777665 3443 4445589999873 456678888888
Q ss_pred HHHHHhc
Q 048318 138 MEDLMKN 144 (145)
Q Consensus 138 i~~~~~~ 144 (145)
+..+++.
T Consensus 247 l~~~v~~ 253 (263)
T 1w8s_A 247 LAELVYG 253 (263)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 8877653
No 453
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=57.34 E-value=23 Score=22.72 Aligned_cols=84 Identities=8% Similarity=-0.058 Sum_probs=49.3
Q ss_pred cCCceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEc---CHHHHHHHHHc---CCCccEEEEecCCCCC----C-------
Q 048318 23 NLRLFALVVDDDCFIRTIHSMALKSLGFKVE-VAE---NGKEAVDLFRS---GAKFDIVFIDKEMPVM----N------- 84 (145)
Q Consensus 23 ~~~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~---~~~~al~~~~~---~~~~dlvl~d~~~~~~----~------- 84 (145)
+.+.+|++++|.-...-.+...|... +.+. ... +..+.+..+.. ...||+|++.....|. +
T Consensus 32 ~~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~ 110 (214)
T 2hsj_A 32 VVEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDAHLYGGAVDKIFLLIGTNDIGKDVPVNEALNN 110 (214)
T ss_dssp SSCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGGGCCCSCCCEEEEECCHHHHHTTCCHHHHHHH
T ss_pred cccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhHHHHhcCCCEEEEEEecCcCCcCCCHHHHHHH
Confidence 34567999999987766666666432 3432 222 44444444432 2468999997632221 1
Q ss_pred HHHHHHHHHhcCCcceEEEEeCC
Q 048318 85 GIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
-..+++.+++..|..+|++++..
T Consensus 111 l~~~i~~l~~~~p~~~iil~~~~ 133 (214)
T 2hsj_A 111 LEAIIQSVARDYPLTEIKLLSIL 133 (214)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCC
T ss_pred HHHHHHHHHHhCCCCeEEEEecC
Confidence 12355666666777888877654
No 454
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=57.34 E-value=29 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=34.5
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEE-EEcCHHHHHHHHHcCCCccEEEEec
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVE-VAENGKEAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~ 78 (145)
..+|..+|-++...+..+..++..|..+. ...+... +..+.. ..+|+|+++.
T Consensus 79 ~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~-~~~~~~-~~fD~I~~np 131 (230)
T 3evz_A 79 NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI-IKGVVE-GTFDVIFSAP 131 (230)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS-STTTCC-SCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchh-hhhccc-CceeEEEECC
Confidence 45789999999999999998888775443 2333211 111122 4699999873
No 455
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=57.31 E-value=43 Score=22.82 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCHH------HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVEVAENGK------EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~~~~------~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
....++..+++.||.+..+.... +.++.+.. ..+|-+|+-.... + .+.++.+++. .+|+|++...
T Consensus 30 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~--~-~~~~~~l~~~--~iPvV~i~~~ 100 (295)
T 3hcw_A 30 VLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ-RMVDAFILLYSKE--N-DPIKQMLIDE--SMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT-TCCSEEEESCCCT--T-CHHHHHHHHT--TCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh-CCcCEEEEcCccc--C-hHHHHHHHhC--CCCEEEECCC
Confidence 34556666677899987654321 23455555 5689887743211 1 2455555543 5677776543
No 456
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=57.02 E-value=43 Score=22.78 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCeEEE-Ec---CHH---HHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVEV-AE---NGK---EAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~-~~---~~~---~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
....++..+++.||.+.. .. +.+ +.++.+.. ..+|.+++-...+. ...+.++.+++. .+|+|.+...
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~-~~~~~~~~~~~~--~iPvV~~~~~ 95 (305)
T 3g1w_A 22 CLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA-KNPAGIAISAIDPV-ELTDTINKAVDA--GIPIVLFDSG 95 (305)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH-HCCSEEEECCSSTT-TTHHHHHHHHHT--TCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH-hCCCEEEEcCCCHH-HHHHHHHHHHHC--CCcEEEECCC
Confidence 345566667778999876 32 222 23444444 46898887543221 224556666653 5777776543
No 457
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=57.00 E-value=42 Score=22.62 Aligned_cols=71 Identities=11% Similarity=0.213 Sum_probs=47.9
Q ss_pred cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCC--CHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh-CCce
Q 048318 48 LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVM--NGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA-GLDL 123 (145)
Q Consensus 48 ~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~--~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~-g~~~ 123 (145)
.|..+. =+.+..++.+.... ..|.|-+ .|.. -|.+.++.++...+++|++.+.+- +.+...+++.. |++.
T Consensus 109 ~g~~~i~Gv~t~~e~~~A~~~--Gad~vk~---Fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI-~~~N~~~~l~agga~~ 182 (224)
T 1vhc_A 109 LNFPITPGVNNPMAIEIALEM--GISAVKF---FPAEASGGVKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVA 182 (224)
T ss_dssp TTCCEECEECSHHHHHHHHHT--TCCEEEE---TTTTTTTHHHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCC
T ss_pred hCCCEEeccCCHHHHHHHHHC--CCCEEEE---eeCccccCHHHHHHHHhhCCCCeEEEECCc-CHHHHHHHHhcCCCEE
Confidence 443333 36678887776654 4787766 5532 368999999987778999765544 45567788887 6655
Q ss_pred e
Q 048318 124 C 124 (145)
Q Consensus 124 ~ 124 (145)
+
T Consensus 183 v 183 (224)
T 1vhc_A 183 C 183 (224)
T ss_dssp E
T ss_pred E
Confidence 5
No 458
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=56.84 E-value=42 Score=24.42 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=39.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcCC---eEE-EEcCHHHHHHHHHc-CCCccEEEEec
Q 048318 27 FALVVDDDCFIRTIHSMALKSLGF---KVE-VAENGKEAVDLFRS-GAKFDIVFIDK 78 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g~---~v~-~~~~~~~al~~~~~-~~~~dlvl~d~ 78 (145)
+|.-+|-++...+..+..++..|+ .+. ...+..+.+..... +..||+|++|.
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 689999999999999998887775 344 66788776655432 24699999985
No 459
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=56.83 E-value=40 Score=22.37 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=44.1
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEEEE
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIVGV 104 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv~l 104 (145)
.++||.....-+-..+...|.+.|+.|..+....+.++.+.......+..+-.++.+.+.. .+++.+.+....+-+++-
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvn 83 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLH 83 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4688899998899999888888899988544333333322210112344554444444333 345555443333334443
No 460
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=56.77 E-value=48 Score=23.22 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=4.4
Q ss_pred CccEEEEe
Q 048318 70 KFDIVFID 77 (145)
Q Consensus 70 ~~dlvl~d 77 (145)
.+|+|++-
T Consensus 62 ~~D~V~i~ 69 (332)
T 2glx_A 62 DVDAVYVS 69 (332)
T ss_dssp TCCEEEEC
T ss_pred CCCEEEEe
Confidence 35666654
No 461
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=56.73 E-value=31 Score=24.28 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=32.3
Q ss_pred CceEEEEeCcH---HHHHHHHHHHHHcCCeEEEEc---CHH----HHHHHHHcCCCccEEEEec
Q 048318 25 RLFALVVDDDC---FIRTIHSMALKSLGFKVEVAE---NGK----EAVDLFRSGAKFDIVFIDK 78 (145)
Q Consensus 25 ~~~iLii~~~~---~~~~~l~~~L~~~g~~v~~~~---~~~----~al~~~~~~~~~dlvl~d~ 78 (145)
+.+|++++.+. .....++...+..|+.+.... +.. ++++.+.. ..||+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~-~~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS-EKMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH-TTCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 45788988883 344445544455677665432 332 34444543 4699999998
No 462
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=56.70 E-value=45 Score=22.94 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCcceEEEEeCCC-CHHHHHHHHHhCCceeecC
Q 048318 86 IEATREIRSMGIKIKIVGVTSLN-SEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 86 ~~~~~~l~~~~~~~~iv~l~~~~-~~~~~~~~~~~g~~~~l~k 127 (145)
.+.++.+++.. ++|+.+ ...- +.+....++..|||.+++-
T Consensus 194 ~~~i~~lr~~~-~~pi~v-ggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYH-AAPALQ-GFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTT-CCCEEE-ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcc-CCcEEE-ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 67888888754 677664 5554 5888888899999999753
No 463
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=56.68 E-value=67 Score=24.85 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCccEEEE-ecCCC---CCCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHH-hCCceee------c
Q 048318 58 GKEAVDLFRSGAKFDIVFI-DKEMP---VMNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQ-AGLDLCH------T 126 (145)
Q Consensus 58 ~~~al~~~~~~~~~dlvl~-d~~~~---~~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~-~g~~~~l------~ 126 (145)
..+..+.+.+ ...+.+++ +..-. ....+++++.+++.. .+|+|+-..-.+.+...++++ .|+++.+ .
T Consensus 454 ~~e~a~~~~~-~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~-~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEA-LGAGEILLNCIDKDGSNSGYDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHH-TTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHH-cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhC-CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 3444444544 45676665 33221 223578888888753 689988777789999999987 7999875 3
Q ss_pred CCCCHHHHHHHHH
Q 048318 127 KPLSVDKILPLME 139 (145)
Q Consensus 127 kP~~~~~L~~~i~ 139 (145)
.+++..++...+.
T Consensus 532 ~~~~~~e~~~~l~ 544 (555)
T 1jvn_A 532 GEFTVNDVKEYLL 544 (555)
T ss_dssp TSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4788888877654
No 464
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=56.65 E-value=44 Score=22.81 Aligned_cols=75 Identities=17% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCCC--HHH----HHHHHHhCCceee-----cCCCCH
Q 048318 63 DLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLNS--EAE----REAFMQAGLDLCH-----TKPLSV 131 (145)
Q Consensus 63 ~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~~--~~~----~~~~~~~g~~~~l-----~kP~~~ 131 (145)
+...+ ...|+|.+.. .-+++.++.+++.. ++|+++.++-.. .+. ...+++.|++++. .+.-++
T Consensus 173 ~~a~~-~Gad~i~~~~----~~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~ 246 (273)
T 2qjg_A 173 RLGAE-LGADIVKTSY----TGDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDV 246 (273)
T ss_dssp HHHHH-TTCSEEEECC----CSSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSH
T ss_pred HHHHH-cCCCEEEECC----CCCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCH
Confidence 34444 4689888874 24688888887654 689988776663 334 6666789999874 333456
Q ss_pred HHHHHHHHHHHh
Q 048318 132 DKILPLMEDLMK 143 (145)
Q Consensus 132 ~~L~~~i~~~~~ 143 (145)
.+..+.+.+.++
T Consensus 247 ~~~~~~l~~~~~ 258 (273)
T 2qjg_A 247 VGITRAVCKIVH 258 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655554
No 465
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=56.57 E-value=49 Score=23.32 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=44.4
Q ss_pred eEEEE-eCcHH---HHHHHHHHHHHcCCeEEE---E----cCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhc
Q 048318 27 FALVV-DDDCF---IRTIHSMALKSLGFKVEV---A----ENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSM 95 (145)
Q Consensus 27 ~iLii-~~~~~---~~~~l~~~L~~~g~~v~~---~----~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~ 95 (145)
+|.++ +++.. ..+.++..+++.|..+.. . .+....+..+.. ..||+|++... ..+...+++.+++.
T Consensus 142 ~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~--~~~~~~~~~~~~~~ 218 (375)
T 3i09_A 142 TWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQS-SKAQILGLANA--GGDTVNAIKAAKEF 218 (375)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-TCCSEEEEECC--HHHHHHHHHHHHHT
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHh-CCCCEEEEecC--chhHHHHHHHHHHc
Confidence 44444 44433 345667777788877642 2 255666777766 57999988543 22456678888876
Q ss_pred CCcce
Q 048318 96 GIKIK 100 (145)
Q Consensus 96 ~~~~~ 100 (145)
....|
T Consensus 219 g~~~~ 223 (375)
T 3i09_A 219 GITKT 223 (375)
T ss_dssp TGGGT
T ss_pred CCCcC
Confidence 66665
No 466
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=56.35 E-value=46 Score=22.95 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=59.9
Q ss_pred CCceEEEEeCcHHHH---HHHHHHHHHcCCeEEEEc-------CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHH-HHH
Q 048318 24 LRLFALVVDDDCFIR---TIHSMALKSLGFKVEVAE-------NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEAT-REI 92 (145)
Q Consensus 24 ~~~~iLii~~~~~~~---~~l~~~L~~~g~~v~~~~-------~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~-~~l 92 (145)
.+++|++.-...... ..+...|++.|+++..+. +.......+..-..||.|++= ..++.+.+ +.+
T Consensus 20 ~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifT----S~naV~~~~~~l 95 (286)
T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFT----SPRAVEAAELCL 95 (286)
T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEEC----CHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEe----CHHHHHHHHHHH
Confidence 356788876652333 667778888898764322 333333333221357877762 34565544 233
Q ss_pred HhcC-------------CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHH
Q 048318 93 RSMG-------------IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLME 139 (145)
Q Consensus 93 ~~~~-------------~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~ 139 (145)
.... ...++.+++ +.....+.+.|...+.....+.+.|...+.
T Consensus 96 ~~~~~~~~~~~d~~~~l~~~~i~aVG----~~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~ 151 (286)
T 1jr2_A 96 EQNNKTEVWERSLKEKWNAKSVYVVG----NATASLVSKIGLDTEGETCGNAEKLAEYIC 151 (286)
T ss_dssp HHTTCHHHHHHHTHHHHHHSEEEECS----HHHHHHHHHTTCCCSCCSCSSHHHHHHHHH
T ss_pred HhccccccchhhHHHHhccCcEEEEC----HHHHHHHHHcCCCcCCCCccCHHHHHHHHH
Confidence 3211 245666554 333444567787765555677888888775
No 467
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=56.20 E-value=44 Score=25.18 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=38.9
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHcCCe-EE-EEcCHHHHHHHHHcCCCccEEEEecC
Q 048318 26 LFALVVDDDCFIRTIHSMALKSLGFK-VE-VAENGKEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~~~~~~~~dlvl~d~~ 79 (145)
-+|.-+|-++...+.++..++..|.. +. ...+..+..... . ..||+|++|.-
T Consensus 131 g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~-~-~~FD~Il~DaP 184 (456)
T 3m4x_A 131 GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF-S-GFFDRIVVDAP 184 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH-T-TCEEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc-c-ccCCEEEECCC
Confidence 36889999999999999999988865 44 445666554333 3 46999999963
No 468
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=56.15 E-value=36 Score=21.60 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=50.4
Q ss_pred eEEEEeC--cHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCC--HHHHHHHHHhcCCcceE
Q 048318 27 FALVVDD--DCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMN--GIEATREIRSMGIKIKI 101 (145)
Q Consensus 27 ~iLii~~--~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~--~~~~~~~l~~~~~~~~i 101 (145)
+|.++.- .......+...|...|..+.... +..+....+.. ..++=+++-...++.. ..+.++..+++ .+++
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~d~~i~iS~sG~t~~~~~~~~~ak~~--g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLAN-LRPTDLMIGVSVWRYLRDTVAALAGAAER--GVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHT-CCTTEEEEEECCSSCCHHHHHHHHHHHHT--TCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhc-CCCCCEEEEEeCCCCCHHHHHHHHHHHHC--CCCE
Confidence 5666643 44455667777888899988777 55555444443 2334333335555433 34555666654 5788
Q ss_pred EEEeCCCCHHH
Q 048318 102 VGVTSLNSEAE 112 (145)
Q Consensus 102 v~l~~~~~~~~ 112 (145)
|.+|+..+...
T Consensus 118 i~IT~~~~s~l 128 (187)
T 3sho_A 118 MALTDSSVSPP 128 (187)
T ss_dssp EEEESCTTSHH
T ss_pred EEEeCCCCCcc
Confidence 99998766554
No 469
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=55.80 E-value=39 Score=24.33 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHhcCCcceEEEEe--CCCCHHHHHHHHHhCCceee
Q 048318 83 MNGIEATREIRSMGIKIKIVGVT--SLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~iv~l~--~~~~~~~~~~~~~~g~~~~l 125 (145)
.+.+++++.+++..+++++.+++ ..........+.++|++.+.
T Consensus 67 ~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~ 111 (345)
T 1nvm_A 67 HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVR 111 (345)
T ss_dssp SCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEE
Confidence 45677777776655666776663 22345566677777777663
No 470
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=55.72 E-value=32 Score=23.54 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=45.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv 102 (145)
+..+||.....-+-..+...|.+.|+.|..+. +.+.+.+.... ...++..+..++.+.+. ..+++.+.+....+-++
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 106 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAE-IGDDALCVPTDVTDPDSVRALFTATVEKFGRVDVL 106 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 45678888888898999999988999988554 44433333222 12344444444444433 34555555433333344
Q ss_pred EE
Q 048318 103 GV 104 (145)
Q Consensus 103 ~l 104 (145)
+-
T Consensus 107 Vn 108 (272)
T 4dyv_A 107 FN 108 (272)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 471
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=55.51 E-value=50 Score=23.04 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=54.5
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCeEE-EEc--CHHHHHHHHHcCCCccEEEE-ec-CCCCC------CHHHHHHHHHhcCC
Q 048318 29 LVVDDDCFIRTIHSMALKSLGFKVE-VAE--NGKEAVDLFRSGAKFDIVFI-DK-EMPVM------NGIEATREIRSMGI 97 (145)
Q Consensus 29 Lii~~~~~~~~~l~~~L~~~g~~v~-~~~--~~~~al~~~~~~~~~dlvl~-d~-~~~~~------~~~~~~~~l~~~~~ 97 (145)
++.|-..+....+....++.|.... .+. +..+-++.+.+ ...+.|-+ .. ...+. +-.++++++|+..
T Consensus 130 IipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~-~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~- 207 (271)
T 3nav_A 130 LIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQ-LGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD- 207 (271)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHH-HCCSCEEECCCC--------CCHHHHHHHHHHHHTT-
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-HCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc-
Confidence 4444445556677777788887633 332 33455555543 23344433 21 11111 1246778888754
Q ss_pred cceEEEEeCCCCHHHHHHHHHhCCceeecC
Q 048318 98 KIKIVGVTSLNSEAEREAFMQAGLDLCHTK 127 (145)
Q Consensus 98 ~~~iv~l~~~~~~~~~~~~~~~g~~~~l~k 127 (145)
+.|+++=.+-.+.+....+...|+|+.++-
T Consensus 208 ~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 208 APPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp CCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 678764333346777776899999999754
No 472
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=55.24 E-value=7.4 Score=27.42 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=39.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc------CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-----HHHHHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL------GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-----IEATREI 92 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~------g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-----~~~~~~l 92 (145)
..+|..+|-++...+..+..+... +-.+. ...|+.+.+... . ..||+|++|...+.... .++++.+
T Consensus 107 ~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~-~~fDvIi~D~~~p~~~~~~l~~~~f~~~~ 184 (294)
T 3adn_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-S-QTFDVIISDCTDPIGPGESLFTSAFYEGC 184 (294)
T ss_dssp CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CC-C-CCEEEEEECC----------CCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhc-C-CCccEEEECCCCccCcchhccHHHHHHHH
Confidence 346889999999999888887543 11222 344544443321 2 46999999986554322 5677777
Q ss_pred Hhc
Q 048318 93 RSM 95 (145)
Q Consensus 93 ~~~ 95 (145)
++.
T Consensus 185 ~~~ 187 (294)
T 3adn_A 185 KRC 187 (294)
T ss_dssp HHT
T ss_pred HHh
Confidence 663
No 473
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=55.15 E-value=55 Score=23.47 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhCCceeecCCC--CHHHHHHHHH
Q 048318 108 NSEAEREAFMQAGLDLCHTKPL--SVDKILPLME 139 (145)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~kP~--~~~~L~~~i~ 139 (145)
...+....++++|..-|+-||+ +.++....++
T Consensus 79 ~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 112 (364)
T 3e82_A 79 THAPLARLALNAGKHVVVDKPFTLDMQEARELIA 112 (364)
T ss_dssp GHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHH
Confidence 3555667777777777777775 3455444443
No 474
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=54.99 E-value=19 Score=25.71 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCC-cceEEEEeCCCCHHHHHHHHHhCCceee
Q 048318 86 IEATREIRSMGI-KIKIVGVTSLNSEAEREAFMQAGLDLCH 125 (145)
Q Consensus 86 ~~~~~~l~~~~~-~~~iv~l~~~~~~~~~~~~~~~g~~~~l 125 (145)
++.++.+++..+ .+||+....-.+.....+++..|||.+.
T Consensus 276 ~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ 316 (336)
T 1f76_A 276 TEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQ 316 (336)
T ss_dssp HHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 367777876533 7899999998999999999999998874
No 475
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=54.99 E-value=49 Score=22.82 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHH--HHHHHHHhcCCcceEEEEeCCCCHHHHHHH
Q 048318 39 TIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGI--EATREIRSMGIKIKIVGVTSLNSEAEREAF 116 (145)
Q Consensus 39 ~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~--~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~ 116 (145)
..+...|++.|+++. . ..+|+|++= ++||. ..++.+.....++|++-+..
T Consensus 18 ~~l~~~l~~~g~~v~-------------~-~~~D~vv~l----GGDGT~l~aa~~~~~~~~~~PilGIn~---------- 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYD-------------D-VEPEIVISI----GGDGTFLSAFHQYEERLDEIAFIGIHT---------- 69 (272)
T ss_dssp HHHHHHHTTSSCEEC-------------S-SSCSEEEEE----ESHHHHHHHHHHTGGGTTTCEEEEEES----------
T ss_pred HHHHHHHHHCCCEeC-------------C-CCCCEEEEE----cCcHHHHHHHHHHhhcCCCCCEEEEeC----------
Confidence 445555777787761 2 458988762 45553 34444433224678877732
Q ss_pred HHhCCceeecCCCCHHHHHHHHHHHHhc
Q 048318 117 MQAGLDLCHTKPLSVDKILPLMEDLMKN 144 (145)
Q Consensus 117 ~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 144 (145)
|-.+|+. .+.++++...+++++++
T Consensus 70 ---G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 70 ---GHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp ---SSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred ---CCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 4445543 55566777777776654
No 476
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=54.94 E-value=47 Score=22.64 Aligned_cols=80 Identities=10% Similarity=-0.047 Sum_probs=46.7
Q ss_pred CceEEEEeCc--HHHHHHHHHHHHHcCCeEEEEcCH--HHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcc
Q 048318 25 RLFALVVDDD--CFIRTIHSMALKSLGFKVEVAENG--KEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKI 99 (145)
Q Consensus 25 ~~~iLii~~~--~~~~~~l~~~L~~~g~~v~~~~~~--~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~ 99 (145)
+.++||.... .-+-..+...|...|+.|..+... .+.++.+.. ....+.++-.++.+.+. ..+++.+.+....+
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 104 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA-EFNPAAVLPCDVISDQEIKDLFVELGKVWDGL 104 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG-GGCCSEEEECCTTCHHHHHHHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH-hcCCceEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence 4567888855 447777778888889998754432 355666544 22345555555555443 34566666554444
Q ss_pred eEEEEe
Q 048318 100 KIVGVT 105 (145)
Q Consensus 100 ~iv~l~ 105 (145)
-+++-.
T Consensus 105 d~li~n 110 (280)
T 3nrc_A 105 DAIVHS 110 (280)
T ss_dssp CEEEEC
T ss_pred CEEEEC
Confidence 455443
No 477
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=54.92 E-value=39 Score=25.31 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=42.8
Q ss_pred CHHHHHHHHHc-CCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCCC---CHHHHHHHHHhCCcee-ecCCC
Q 048318 57 NGKEAVDLFRS-GAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSLN---SEAEREAFMQAGLDLC-HTKPL 129 (145)
Q Consensus 57 ~~~~al~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~~---~~~~~~~~~~~g~~~~-l~kP~ 129 (145)
+.+++++.+.. -..++++.++.=++. +.++-.+.+++.. ..|+-++.+.. +......+++.++.++ ..|+.
T Consensus 264 t~~eai~~~~~ll~~y~i~~IEdPl~~-dD~eg~~~L~~~~-~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~ 339 (428)
T 3tqp_A 264 TSEEMIDRLTEWTKKYPVISIEDGLSE-NDWAGWKLLTERL-ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLN 339 (428)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCT-TCHHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhhcccceEeCCCCc-ccHHHHHHHHHhc-CCCcceeccccccCCHHHHHHHHHhCCCCEEEeccc
Confidence 56777776543 124788888865553 3466667776542 22443356652 6777788887776555 55553
No 478
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=54.87 E-value=34 Score=21.74 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=39.7
Q ss_pred CccEEEEec-CCCCCCHHH-HHHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHHH
Q 048318 70 KFDIVFIDK-EMPVMNGIE-ATREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDLM 142 (145)
Q Consensus 70 ~~dlvl~d~-~~~~~~~~~-~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 142 (145)
.+.++++|- +.-..+..+ +.+.+........+|+.+... .. ....+...+..+-..|.+.+++...+.+.+
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~-~~-~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~ 174 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV-SR-IIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG-GG-SCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh-hh-cCHHHHHhCceeecCCCCHHHHHHHHHHHH
Confidence 477899984 222222233 333444434456666555443 22 223344455566678999998888887655
No 479
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=54.70 E-value=52 Score=22.98 Aligned_cols=53 Identities=9% Similarity=0.017 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCC--C-HHH-HHHHHHhCCceeecCCCC--HHHHHHHHHHH
Q 048318 85 GIEATREIRSMGIKIKIVGVTSLN--S-EAE-REAFMQAGLDLCHTKPLS--VDKILPLMEDL 141 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv~l~~~~--~-~~~-~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~ 141 (145)
+..+++.+.. .+|+|+..... + ... .....+.|. +++..|-+ .++|...+.++
T Consensus 264 ~~~~~EAma~---G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAAA---GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHHH---TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHHh---CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 4555565554 56777653331 1 111 234456676 88888855 88898888654
No 480
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=54.69 E-value=25 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=22.2
Q ss_pred cccCCceEEEEeCc----HHHHHHHHHHHHHcCCeEEEEcC
Q 048318 21 AKNLRLFALVVDDD----CFIRTIHSMALKSLGFKVEVAEN 57 (145)
Q Consensus 21 ~~~~~~~iLii~~~----~~~~~~l~~~L~~~g~~v~~~~~ 57 (145)
...+.|+|+++... -.-...+...|.+.|++|..+..
T Consensus 16 ~~~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 16 IEGRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp ---CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhhhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 34455788888643 22235567778888988886543
No 481
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=54.68 E-value=56 Score=23.34 Aligned_cols=107 Identities=7% Similarity=0.069 Sum_probs=62.0
Q ss_pred CceEEEEeCcHH-----HHHHHHHHHHHcCCe---------EEEEc--CHHHHHHHHHcCCCccEEEEecCCCCCCHHHH
Q 048318 25 RLFALVVDDDCF-----IRTIHSMALKSLGFK---------VEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEA 88 (145)
Q Consensus 25 ~~~iLii~~~~~-----~~~~l~~~L~~~g~~---------v~~~~--~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~ 88 (145)
+.+.+++.+.+. ....++...+..|.. +.... +.++....+.. .|++++-- ..+.-|.-+
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~---adv~v~pS-~~E~~~~~~ 290 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA---CDVIVNCS-SGEGFGLCS 290 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH---CSEEEECC-SCCSSCHHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh---CCEEEeCC-CcCCCCcHH
Confidence 345566655432 235556655555543 22222 34455555543 57777733 233445566
Q ss_pred HHHHHhcCCcceEEEEeCCCCHHHHHHHHHhCCc---------------ee--ecCCCCHHHHHHHHHHHHh
Q 048318 89 TREIRSMGIKIKIVGVTSLNSEAEREAFMQAGLD---------------LC--HTKPLSVDKILPLMEDLMK 143 (145)
Q Consensus 89 ~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~g~~---------------~~--l~kP~~~~~L~~~i~~~~~ 143 (145)
++.+.. .+|+|+ +.. ....+....|.. ++ +..|-+.+++...+ ++++
T Consensus 291 lEAma~---G~PvI~-s~~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 291 AEGAVL---GKPLII-SAV---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHTT---TCCEEE-ECC---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHc---CCCEEE-cCC---CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 666543 567765 332 234455666665 77 88899999999999 8775
No 482
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=54.65 E-value=16 Score=23.98 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=64.8
Q ss_pred ccCCceEEEEeCcH--HHHHHHHHHHHH--cCCeEEEEc-------CHHH-HHH---HHHcCCCcc--EEEEecC-----
Q 048318 22 KNLRLFALVVDDDC--FIRTIHSMALKS--LGFKVEVAE-------NGKE-AVD---LFRSGAKFD--IVFIDKE----- 79 (145)
Q Consensus 22 ~~~~~~iLii~~~~--~~~~~l~~~L~~--~g~~v~~~~-------~~~~-al~---~~~~~~~~d--lvl~d~~----- 79 (145)
.+|.++|.|.-|+. ...+.+...|++ .||+|.-+. +..+ +.. .+.. ...| ++++...
T Consensus 19 ~~M~MkIaIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~-g~~d~GIliCGTGiG~sI 97 (179)
T 3k7p_A 19 SHMTRRVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVAR-KEVEFGVLAAGSGIGMSI 97 (179)
T ss_dssp --CCEEEEEEECTGGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHT-TSSSEEEEEESSSHHHHH
T ss_pred ccCceEEEEEECchHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHc-CCCCEEEEEccCcHHHhh
Confidence 34567898888886 667899999999 899987431 2333 221 2233 3455 5555442
Q ss_pred ----CCCC-----CHHHHHHHHHhcCCcceEEEEeCCCC-HHHHHHHHHhCCceeecCCCCH-HHHHHHHHHH
Q 048318 80 ----MPVM-----NGIEATREIRSMGIKIKIVGVTSLNS-EAEREAFMQAGLDLCHTKPLSV-DKILPLMEDL 141 (145)
Q Consensus 80 ----~~~~-----~~~~~~~~l~~~~~~~~iv~l~~~~~-~~~~~~~~~~g~~~~l~kP~~~-~~L~~~i~~~ 141 (145)
.++. ......+.-|+ +.+..|+.+...-- .+..... ++.||.-||+- ..-.++|.++
T Consensus 98 aANKv~GIRAAlc~d~~sA~laR~-HNnANVL~lG~Rvig~elA~~I----vd~fL~t~Feg~gRH~~RV~kI 165 (179)
T 3k7p_A 98 AANKVPGVRAALCHDHYTAAMSRI-HNDANIVCVGERTTGVEVIREI----IITFLQTPFSGEERHVRRIEKI 165 (179)
T ss_dssp HHHTSTTCCEEECCSHHHHHHHHH-TTCCSEEEEETTTSCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHH
T ss_pred HhhcCCCeEEEEeCCHHHHHHHHH-hCCCcEEEEcccccCHHHHHHH----HHHHHcCCCCCCCchHHHHHHH
Confidence 1221 11222233333 44778888888753 3333332 34577778876 6666666655
No 483
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=54.63 E-value=12 Score=25.06 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=32.3
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcC--HHHHHHHHHcCCCccEEEEe
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAEN--GKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~~~~~~~~dlvl~d 77 (145)
..+|+|+|-.......+...|+..|+.+..... ..+.+. . ..+|.+++-
T Consensus 24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~---~-~~~dglil~ 74 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIK---E-QGFRAIIIS 74 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHH---H-HTCSEEEEE
T ss_pred CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHh---h-cCCCEEEEC
Confidence 357899988777777888889988988775542 222222 2 247866663
No 484
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=54.55 E-value=15 Score=26.09 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=47.6
Q ss_pred ceEEEEeCcHHHHHHHHHHHHHc--C----CeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCC-----HHHHHHHHH
Q 048318 26 LFALVVDDDCFIRTIHSMALKSL--G----FKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMN-----GIEATREIR 93 (145)
Q Consensus 26 ~~iLii~~~~~~~~~l~~~L~~~--g----~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~-----~~~~~~~l~ 93 (145)
.+|-++|=|+...+..+..|... | -.+. ...|+.+.++.. ...||+||+|..-|... ..++.+.++
T Consensus 108 ~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~--~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~ 185 (294)
T 3o4f_A 108 ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT--SQTFDVIISDCTDPIGPGESLFTSAFYEGCK 185 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS--SCCEEEEEESCCCCCCTTCCSSCCHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc--cccCCEEEEeCCCcCCCchhhcCHHHHHHHH
Confidence 47889999999999999887531 2 2344 566777665432 24699999998766433 346777777
Q ss_pred hcC
Q 048318 94 SMG 96 (145)
Q Consensus 94 ~~~ 96 (145)
+..
T Consensus 186 ~~L 188 (294)
T 3o4f_A 186 RCL 188 (294)
T ss_dssp HTE
T ss_pred HHh
Confidence 643
No 485
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=54.55 E-value=35 Score=22.19 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=47.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHcC--CeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHh
Q 048318 27 FALVVDDDCFIRTIHSMALKSLG--FKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRS 94 (145)
Q Consensus 27 ~iLii~~~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~ 94 (145)
.+++.++|+...+.+++..+.+| |.+. ..+....++ + +.-.++-+.|=+.+-.+.+..|+.
T Consensus 35 ~iil~~~D~~v~esv~dV~~rwGG~F~ve-~~~w~~~i~---~---w~G~VVHLTMYG~~i~dvi~~Ir~ 97 (178)
T 2o3a_A 35 GIYFDTEDKSVFESVRDVVERWGGDFFIK-AVSWKKLLR---E---FDGLKVHLTMYGIPLPQKLEEIKR 97 (178)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHCSCCEEE-ECCHHHHHH---H---CCSEEEEEEEEEEEHHHHHHHHHT
T ss_pred eeEEeCCCHHHHHHHHHHHHhcCCceEEE-ecCHHHHHH---H---cCCEEEEEecCCCchHHHHHHhhc
Confidence 46888999999999999999876 7788 777776554 3 244667777777778888999986
No 486
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=54.51 E-value=39 Score=22.60 Aligned_cols=80 Identities=13% Similarity=-0.071 Sum_probs=44.4
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEcCHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAENGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIVG 103 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv~ 103 (145)
+.++||.....-+-..+...|.+.|+.|.......+.++.+..........+..++.+.+. ..+++.+.+....+-+++
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 88 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILV 88 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4568888888888888888898899998855433333332221011223334444444433 345555554433333444
Q ss_pred E
Q 048318 104 V 104 (145)
Q Consensus 104 l 104 (145)
-
T Consensus 89 ~ 89 (248)
T 3op4_A 89 N 89 (248)
T ss_dssp E
T ss_pred E
Confidence 3
No 487
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=54.41 E-value=43 Score=24.21 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCcceEE--EEeCCCCHHHHHHHHHhCCceeec-----CCCCHHHHHHHHHHHHh
Q 048318 85 GIEATREIRSMGIKIKIV--GVTSLNSEAEREAFMQAGLDLCHT-----KPLSVDKILPLMEDLMK 143 (145)
Q Consensus 85 ~~~~~~~l~~~~~~~~iv--~l~~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~~ 143 (145)
++++++.+++.. .+|++ ..++-.+.+.....++.|++.++. +.-++.+....+...++
T Consensus 228 ~lell~~i~~~~-~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~ 292 (330)
T 2yzr_A 228 LYEVLLEVKKLG-RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATY 292 (330)
T ss_dssp HHHHHHHHHHHT-SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHH
Confidence 447888887743 56775 344445789999999999999964 34567777666666554
No 488
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=54.38 E-value=47 Score=22.46 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=43.7
Q ss_pred CHHHHHHHHHcCCCccEEEE---ecCC-CCC-CHHHHHHHHHhcC-CcceEEEEeCCCCHHHHHHHHHhCCceeecCCCC
Q 048318 57 NGKEAVDLFRSGAKFDIVFI---DKEM-PVM-NGIEATREIRSMG-IKIKIVGVTSLNSEAEREAFMQAGLDLCHTKPLS 130 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl~---d~~~-~~~-~~~~~~~~l~~~~-~~~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~ 130 (145)
+..+.++.+ + ...|.+=+ |-+. |.. -|..+++.+|+.. ...-+-+++.. .......+.++|+|.+......
T Consensus 14 ~l~~~i~~~-~-~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~Ea 90 (231)
T 3ctl_A 14 KFKEQIEFI-D-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR-PQDYIAQLARAGADFITLHPET 90 (231)
T ss_dssp GHHHHHHHH-H-TTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC-GGGTHHHHHHHTCSEEEECGGG
T ss_pred hHHHHHHHH-H-cCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecC-HHHHHHHHHHcCCCEEEECccc
Confidence 445566666 3 23454433 4332 322 3788999999753 11222223333 3445788899999988765433
Q ss_pred -HHHHHHHHHH
Q 048318 131 -VDKILPLMED 140 (145)
Q Consensus 131 -~~~L~~~i~~ 140 (145)
...+.+.++.
T Consensus 91 ~~~~~~~~i~~ 101 (231)
T 3ctl_A 91 INGQAFRLIDE 101 (231)
T ss_dssp CTTTHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 2234444443
No 489
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=54.36 E-value=46 Score=22.27 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=51.8
Q ss_pred CHHHHHHHHHcCCCccEEE-EecCCCC---CCHHHHHHHHHhcCCcceEEEEeCCCCHHHHHHHHHh---CCceee----
Q 048318 57 NGKEAVDLFRSGAKFDIVF-IDKEMPV---MNGIEATREIRSMGIKIKIVGVTSLNSEAEREAFMQA---GLDLCH---- 125 (145)
Q Consensus 57 ~~~~al~~~~~~~~~dlvl-~d~~~~~---~~~~~~~~~l~~~~~~~~iv~l~~~~~~~~~~~~~~~---g~~~~l---- 125 (145)
+..+..+.+.. ..++.|+ .+..-.. .-.++.++++++.. .+|+++-++-.+.+....+++. |++.++
T Consensus 147 ~~~e~~~~~~~-~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNK-EGCARYVVTDIAKDGTLQGPNLELLKNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHH-TTCCCEEEEEC-------CCCHHHHHHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHh-CCCCEEEEeccCcccccCCCCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 44555454544 4578555 4433211 13477888888654 6899988777887888999988 999875
Q ss_pred --cCCCCHHHHHHHH
Q 048318 126 --TKPLSVDKILPLM 138 (145)
Q Consensus 126 --~kP~~~~~L~~~i 138 (145)
..|+++.++...+
T Consensus 225 l~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 225 LYAKAFTLEEALEAT 239 (244)
T ss_dssp HHTTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHh
Confidence 3467777766554
No 490
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.32 E-value=39 Score=21.51 Aligned_cols=52 Identities=21% Similarity=0.136 Sum_probs=29.2
Q ss_pred CCceEEEEeCcHHHHHHHHHHHH--HcCCeEEEEcC--HHHHHHHHHcCCCccEEEEecC
Q 048318 24 LRLFALVVDDDCFIRTIHSMALK--SLGFKVEVAEN--GKEAVDLFRSGAKFDIVFIDKE 79 (145)
Q Consensus 24 ~~~~iLii~~~~~~~~~l~~~L~--~~g~~v~~~~~--~~~al~~~~~~~~~dlvl~d~~ 79 (145)
.+.+|+++|-|+... +...+. ..++.+..... ..+.++.+. ..||+||+|.-
T Consensus 29 ~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAASEKDVYGIRKDL--ADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCSHHHHHTHHHHT--TTSSEEEEECC
T ss_pred CCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCcHHHHHHHHHhc--CCCCEEEEECC
Confidence 356789999886533 233332 23456655443 223333333 35899999973
No 491
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=54.24 E-value=47 Score=22.36 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=3.1
Q ss_pred EEEEecC
Q 048318 73 IVFIDKE 79 (145)
Q Consensus 73 lvl~d~~ 79 (145)
+|++|..
T Consensus 89 vV~~~~~ 95 (291)
T 3l49_A 89 LFTVDTA 95 (291)
T ss_dssp EEEESCC
T ss_pred EEEecCC
Confidence 4444443
No 492
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=54.09 E-value=52 Score=22.83 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred CceEEEEeCcHHHHHHHHHHHHH-cCCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKS-LGFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|.||.--..-...+...|.. .++++. .+....+..+.+... +.+-. -.+-.++++ ..++-+|
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~~~~~------~~~~~~ll~-----~~D~V~i 72 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD--YRIMP------FDSIESLAK-----KCDCIFL 72 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH--HTCCB------CSCHHHHHT-----TCSEEEE
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH--cCCCC------cCCHHHHHh-----cCCEEEE
Confidence 46788888876665544445544 467766 444333333332221 11100 012222222 3344443
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHHH
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLMED 140 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~ 140 (145)
........+....++++|..-++-||+. .++..+.++.
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~ 112 (308)
T 3uuw_A 73 HSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIEL 112 (308)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHH
T ss_pred eCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHH
Confidence 3333445666777888888877788864 4555554443
No 493
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=54.08 E-value=26 Score=25.46 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCeEEEEc--CHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEEEEeCC
Q 048318 37 IRTIHSMALKSLGFKVEVAE--NGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIVGVTSL 107 (145)
Q Consensus 37 ~~~~l~~~L~~~g~~v~~~~--~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv~l~~~ 107 (145)
....++..+++.||.+..+. +..+.++.+.. ..+|-||+.. ...+.++.+++. .+|+|++...
T Consensus 42 l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~-~~vDGiIi~~-----~~~~~~~~l~~~--~iPvV~i~~~ 106 (412)
T 4fe7_A 42 VVEGVGEYLQASQSEWDIFIEEDFRARIDKIKD-WLGDGVIADF-----DDKQIEQALADV--DVPIVGVGGS 106 (412)
T ss_dssp HHHHHHHHHHHHTCCEEEEECC-CC---------CCCSEEEEET-----TCHHHHHHHTTC--CSCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEecCCccchhhhHhc-CCCCEEEEec-----CChHHHHHHhhC--CCCEEEecCC
Confidence 34556666677798876443 33334555555 5799888832 233455565543 6788877543
No 494
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=54.01 E-value=34 Score=23.49 Aligned_cols=79 Identities=13% Similarity=-0.009 Sum_probs=46.0
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCH-HHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNG-IEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~-~~~~~~l~~~~~~~~iv 102 (145)
+..+||.....-+-..+...|.+.|+.|..+. +.+.+.+.... ....+..+..++.+.+. ..+++.+.+....+-++
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 107 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATK-IGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL 107 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-cCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 45688888888899999999988999988554 43333332222 12344455444545443 34555555443333344
Q ss_pred EE
Q 048318 103 GV 104 (145)
Q Consensus 103 ~l 104 (145)
+-
T Consensus 108 vn 109 (277)
T 3gvc_A 108 VA 109 (277)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 495
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=53.93 E-value=48 Score=22.40 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCeEEEEcC------HHHHHHHHHcCCCccEEEEe
Q 048318 38 RTIHSMALKSLGFKVEVAEN------GKEAVDLFRSGAKFDIVFID 77 (145)
Q Consensus 38 ~~~l~~~L~~~g~~v~~~~~------~~~al~~~~~~~~~dlvl~d 77 (145)
...++..+++.||.+..+.. ..+.++.+.. ..+|.+|+-
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~ 71 (287)
T 3bbl_A 27 LSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS-GNVDGFVLS 71 (287)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT-TCCSEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc-CCCCEEEEe
Confidence 34444555555666554321 1233444443 346655553
No 496
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=53.92 E-value=58 Score=23.31 Aligned_cols=103 Identities=10% Similarity=0.079 Sum_probs=50.2
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHc-CCeEE-EEcCHHHHHHHHHcCCCccEEEEecCCCCCCHHHHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSL-GFKVE-VAENGKEAVDLFRSGAKFDIVFIDKEMPVMNGIEATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~iv 102 (145)
+++|.||.--..-...+. .+... ++++. .+....+..+.... +.+-.. .+-.+++ .....++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~---~g~~~~------~~~~~ll---~~~~~D~V~i 71 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ---KGLKIY------ESYEAVL---ADEKVDAVLI 71 (359)
T ss_dssp CEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT---TTCCBC------SCHHHHH---HCTTCCEEEE
T ss_pred cCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh---cCCcee------CCHHHHh---cCCCCCEEEE
Confidence 467888887765554444 44443 67766 33333333333322 222100 1222222 2222233333
Q ss_pred EEeCCCCHHHHHHHHHhCCceeecCCCC--HHHHHHHHHH
Q 048318 103 GVTSLNSEAEREAFMQAGLDLCHTKPLS--VDKILPLMED 140 (145)
Q Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~ 140 (145)
........+....++++|..-++-||+. .++..+.++.
T Consensus 72 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (359)
T 3e18_A 72 ATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDV 111 (359)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHH
Confidence 2233345566777888888777888854 4555544443
No 497
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=53.90 E-value=56 Score=23.13 Aligned_cols=91 Identities=10% Similarity=0.145 Sum_probs=55.7
Q ss_pred CcHHHHHHHHHHHHHc-CCeEEE------EcCHHHHHHHHHcCCCccEEEEecCCC-CCCHHHHHHHHHhc-CCcceEEE
Q 048318 33 DDCFIRTIHSMALKSL-GFKVEV------AENGKEAVDLFRSGAKFDIVFIDKEMP-VMNGIEATREIRSM-GIKIKIVG 103 (145)
Q Consensus 33 ~~~~~~~~l~~~L~~~-g~~v~~------~~~~~~al~~~~~~~~~dlvl~d~~~~-~~~~~~~~~~l~~~-~~~~~iv~ 103 (145)
|.....+.++.+++.. +..++. +.+..++++.+.. ..+|-||..=.-+ ..+|.+.++.+.+. ...++|+
T Consensus 136 dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~-lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~~rI~Im- 213 (287)
T 3iwp_A 136 DGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT-LGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVM- 213 (287)
T ss_dssp TSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH-HTCSEEEECTTSSSTTTTHHHHHHHHHHHTTSSEEE-
T ss_pred CCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH-cCCCEEECCCCCCChHHhHHHHHHHHHHhCCCCEEE-
Confidence 3334445555555543 344442 3467889998876 4699999875443 35789998888663 3345554
Q ss_pred EeCCCCHHHHHHHHH-hCCceee
Q 048318 104 VTSLNSEAEREAFMQ-AGLDLCH 125 (145)
Q Consensus 104 l~~~~~~~~~~~~~~-~g~~~~l 125 (145)
..+.-..+.+....+ .|++.|-
T Consensus 214 aGGGV~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 214 PGGGITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp ECTTCCTTTHHHHHHHHCCSEEE
T ss_pred ECCCcCHHHHHHHHHhhCCCEEe
Confidence 444445555555554 7877774
No 498
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=53.89 E-value=42 Score=23.76 Aligned_cols=54 Identities=24% Similarity=0.184 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCc-ceEEEEeCCCCHHHHHHHHHhCCceeecCCCCHHHHHHHHHHH
Q 048318 86 IEATREIRSMGIK-IKIVGVTSLNSEAEREAFMQAGLDLCHTKPLSVDKILPLMEDL 141 (145)
Q Consensus 86 ~~~~~~l~~~~~~-~~iv~l~~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 141 (145)
.+.++..++..++ .++++-+. +.++..++...|+|.+..-+++++.+...++.+
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 238 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVECS--SLQEAVQAAEAGADLVLLDNFKPEELHPTATVL 238 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCCeEEEecC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3455666664443 56666554 346678888999999888899998887766543
No 499
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=53.82 E-value=49 Score=22.47 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=46.8
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCeEEEEc-CHHHHHHHHHcCCCccEEEEecCCCCCCHH-HHHHHHHhcCCcceEE
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFKVEVAE-NGKEAVDLFRSGAKFDIVFIDKEMPVMNGI-EATREIRSMGIKIKIV 102 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~~~~~~~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~iv 102 (145)
+.++||.....-+-..+...|.+.|+.|..+. +.+.+-+.... ....+.++..++.+.+.. .+++.+ +....+-++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~-~~~~~id~l 107 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE-LGNRAEFVSTNVTSEDSVLAAIEAA-NQLGRLRYA 107 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHH-TTSSEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-hCCceEEEEcCCCCHHHHHHHHHHH-HHhCCCCeE
Confidence 45789999999999999999988999988544 44433332222 123455555555554443 345555 333344444
Q ss_pred EEe
Q 048318 103 GVT 105 (145)
Q Consensus 103 ~l~ 105 (145)
+..
T Consensus 108 v~~ 110 (281)
T 3ppi_A 108 VVA 110 (281)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 500
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=53.82 E-value=45 Score=22.05 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=45.7
Q ss_pred CceEEEEeCcHHHHHHHHHHHHHcCCe--EE-EEcCHHHHHHHHHc-------------C-CCccEEEEecCCCCCCHHH
Q 048318 25 RLFALVVDDDCFIRTIHSMALKSLGFK--VE-VAENGKEAVDLFRS-------------G-AKFDIVFIDKEMPVMNGIE 87 (145)
Q Consensus 25 ~~~iLii~~~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~~-------------~-~~~dlvl~d~~~~~~~~~~ 87 (145)
..++..+|-++...+..+..++..|+. +. ...+..+.+..+.. . ..||+|+++...+ +-..
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~--~~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE--NYPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG--GHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH--HHHH
Confidence 357899999999999999999877753 44 55677665554321 1 3699999986432 2335
Q ss_pred HHHHHHh
Q 048318 88 ATREIRS 94 (145)
Q Consensus 88 ~~~~l~~ 94 (145)
+++.+.+
T Consensus 163 ~l~~~~~ 169 (239)
T 2hnk_A 163 YYPLILK 169 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5565554
Done!