Query 048319
Match_columns 348
No_of_seqs 184 out of 1407
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.8 6.6E-19 2.3E-23 175.7 16.4 295 2-331 18-332 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.7 6E-16 2E-20 152.8 20.0 171 2-201 19-201 (491)
3 3o7q_A L-fucose-proton symport 99.1 1E-09 3.4E-14 106.0 16.8 160 6-194 36-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.0 1.9E-09 6.5E-14 104.2 13.3 154 8-194 40-204 (451)
5 2gfp_A EMRD, multidrug resista 99.0 1.6E-09 5.6E-14 102.7 10.6 155 5-191 9-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 98.8 1.4E-07 4.9E-12 90.9 16.0 164 3-195 259-432 (451)
7 3o7q_A L-fucose-proton symport 98.7 2.1E-07 7.2E-12 89.5 14.9 158 5-194 267-430 (438)
8 4gc0_A D-xylose-proton symport 98.4 5.5E-07 1.9E-11 88.2 8.7 101 31-138 55-157 (491)
9 4aps_A DI-OR tripeptide H+ sym 98.3 1.5E-06 5E-11 85.3 9.8 167 10-199 297-474 (491)
10 2cfq_A Lactose permease; trans 98.2 1E-05 3.4E-10 78.3 12.3 148 16-195 241-398 (417)
11 2cfq_A Lactose permease; trans 98.1 3E-07 1E-11 89.1 -1.6 67 9-76 20-87 (417)
12 4gc0_A D-xylose-proton symport 98.0 0.00011 3.7E-09 71.7 15.9 163 19-213 300-474 (491)
13 2gfp_A EMRD, multidrug resista 97.7 4.2E-05 1.4E-09 72.0 6.4 150 6-186 209-366 (375)
14 2xut_A Proton/peptide symporte 95.8 0.0063 2.1E-07 59.7 4.5 116 63-200 374-506 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=6.6e-19 Score=175.71 Aligned_cols=295 Identities=16% Similarity=0.174 Sum_probs=191.7
Q ss_pred hHHHHHHHHHHHhH-HHHHHHhhhhhC------CchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhh
Q 048319 2 AALLWADCLAQFVM-WTMMEYLTEVWK------ISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSV 74 (348)
Q Consensus 2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~------~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~ 74 (348)
.+.++++++++|++ ..+..|+++.+| ++..+++.+.+.+.....+.++++|+++||++||||++.++.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 36789999999999 999999999999 99999999999999999999999999999966999999999999999
Q ss_pred hhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHH
Q 048319 75 GIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFF 154 (348)
Q Consensus 75 G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f 154 (348)
+.+++.++. .+...++++..+.++|.|...|+..++.+|.+++++ |.+. .+.|
T Consensus 98 ~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~---~~~~ 150 (524)
T 2xut_A 98 GHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLA---QKAF 150 (524)
T ss_dssp HHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHH---HHHH
T ss_pred HHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHH---HHHH
Confidence 998877652 024677888899999999999999999999997543 2224 5678
Q ss_pred HHHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHHHHHHHHHHhhccCCC
Q 048319 155 KLLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRL 228 (348)
Q Consensus 155 ~~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~~~V~~~a~~~~~~~~ 228 (348)
++++.+.| .+++.+.+++. ||++.|.+.++..+++.++++..++.++.++|++++..+..+.+..+.|+++.+.
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (524)
T 2xut_A 151 DMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK 230 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhccc
Confidence 88888888 66776666654 9999999999988888887777766666555555554444444444444432110
Q ss_pred CCCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcc-------cccCcchhHHHHHhhhhh
Q 048319 229 PSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRW-------RLCSVTEVEETKRLLRMI 301 (348)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w-------~~~~~~~Vee~k~~l~~l 301 (348)
+ +.....+..... .....+.+.+....+..+....-- ..+.+...|| +.+++.++++.|++++.+
T Consensus 231 ~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (524)
T 2xut_A 231 G-NIGLVLALIGGV------SAAYALVNIPTLGIVAGLCCAMVL-VMGFVGAGASLQLERARKSHPDAAVDGVRSVLRIL 302 (524)
T ss_dssp H-HHHHHHHHHHHH------HHHHTGGGTTTTCSSHHHHHHHHH-HHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHH
T ss_pred C-ccchhhhhhhhh------hhhhhhcccchhhhhhhhhhhhhh-hhcccccchhhHHhhhhccccHhHHHHHHHHHHHH
Confidence 0 000000000000 000000000000000000000000 0000012233 223445567788999999
Q ss_pred hHHHHHHHHHHhhcccchHHHHHHHHhccC
Q 048319 302 PICLTFIIPGVVSSIGNTYFVEQADLLNKK 331 (348)
Q Consensus 302 pif~~~ii~~~~~~Q~~t~~v~Qa~~md~~ 331 (348)
++++...+++..+.|..+.+..|+..++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
T 2xut_A 303 VLFALVTPFWSLFDQKASTWILQANDMVKP 332 (524)
T ss_dssp HHHTTSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhccchhhHHhHHhcCCC
Confidence 999999999999999999998888877764
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.70 E-value=6e-16 Score=152.82 Aligned_cols=171 Identities=13% Similarity=0.177 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHhH-HHHHHHhhhh-----hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhh
Q 048319 2 AALLWADCLAQFVM-WTMMEYLTEV-----WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVG 75 (348)
Q Consensus 2 ~~~e~~Er~a~yg~-~~L~~Yl~~~-----l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G 75 (348)
.+..++++++||++ ..+..|+++. +|++..+++.+.+.+.....+..+++|+++||++|||+++.++.++..+|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~ 98 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG 98 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 35789999999999 9999999998 99999999999999999999999999999999779999999999999999
Q ss_pred hhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHH
Q 048319 76 IGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFK 155 (348)
Q Consensus 76 ~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~ 155 (348)
.+++..+. +...++++..+.++|.|...|...++.+|.+++++ +.| ...++
T Consensus 99 ~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r---~~~~~ 149 (491)
T 4aps_A 99 HIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRR---DAGFS 149 (491)
T ss_dssp HHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THH---HHHHH
T ss_pred HHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccc---eeeeh
Confidence 98887642 23567888899999999999999999999998654 234 66888
Q ss_pred HHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccc
Q 048319 156 LLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYE 201 (348)
Q Consensus 156 ~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~ 201 (348)
+++.+.| .+++.+.+++. ||++.|.+.++..+++.++++..++++.
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 8888888 66777766664 9999999998888888777766555443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.14 E-value=1e-09 Score=105.97 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=120.1
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319 6 WADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP 85 (348)
Q Consensus 6 ~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p 85 (348)
+..-+.+..+..+..++.+.+|.+..+.+.+.+.+.....+..+++|+++|| +||||+++++.++..+|.++....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~- 113 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAE- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccc-
Confidence 3344444333556777888999999999999999999999999999999999 59999999999999999988843211
Q ss_pred ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319 86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP--- 162 (348)
Q Consensus 86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in--- 162 (348)
..+...++++..+.++|.|...|...++.+|.+++++ | .+.++++..+.+
T Consensus 114 ------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 114 ------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------G---HFRLNLAQTFNSFGA 166 (438)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------H---HHHHHHHHHHHHHHH
T ss_pred ------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------H---HHHHHHHHHHHHHHH
Confidence 0135778889999999999999999999998886542 3 445677666666
Q ss_pred hhcchhhccc--c--c-------------------------chhhHHHHHHHHHHHHHHHH
Q 048319 163 VAAIIPISYI--K--P-------------------------WNLRFGVSAICTVIATLLFL 194 (348)
Q Consensus 163 ~~~~~~~~yi--~--g-------------------------~~~~F~i~~~~~~i~~~vf~ 194 (348)
.+++.+..++ + + |++.|.+.++..++..++++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555544433 2 2 99999776665555444443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.03 E-value=1.9e-09 Score=104.24 Aligned_cols=154 Identities=10% Similarity=-0.000 Sum_probs=118.5
Q ss_pred HHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc----cc
Q 048319 8 DCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM----ST 83 (348)
Q Consensus 8 Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~----s~ 83 (348)
..+..+.+..+..++.+++ .+..+.+.+.+.+.....+..+++|+++||+ |||++++++.++..+|.+++.+ +.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 117 (451)
T 1pw4_A 40 YYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS 117 (451)
T ss_dssp HHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3333333333344555567 9999999999999999999999999999995 9999999999999999988876 31
Q ss_pred CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319 84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP- 162 (348)
Q Consensus 84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in- 162 (348)
+...++++..+.++|.|...|...++.+|.+++++ | .+.+.++..+.+
T Consensus 118 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 118 ----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R---GGIVSVWNCAHNV 166 (451)
T ss_dssp ----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H---HHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h---hHHHHHHHHHHHH
Confidence 23567788899999999999999999999886432 3 567777777766
Q ss_pred --hhcchhhccc-c--c-chhhHHHHHHHHHHHHHHHH
Q 048319 163 --VAAIIPISYI-K--P-WNLRFGVSAICTVIATLLFL 194 (348)
Q Consensus 163 --~~~~~~~~yi-~--g-~~~~F~i~~~~~~i~~~vf~ 194 (348)
.+++.+.+++ + | |++.|.+.++..++..++.+
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 6666665553 3 7 99999998877666554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=1.6e-09 Score=102.70 Aligned_cols=155 Identities=10% Similarity=0.069 Sum_probs=121.2
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319 5 LWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP 84 (348)
Q Consensus 5 e~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~ 84 (348)
.+...++..........+.+++|.+..+.+.+.+.+.....+..+++|+++|| +||||.+.++.++..++.+++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~- 86 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc-
Confidence 34444444434333444567899999999999999999999999999999999 5999999999999999998877641
Q ss_pred CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh--
Q 048319 85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-- 162 (348)
Q Consensus 85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-- 162 (348)
+...++++..+.++|.|...|...++..|.+++++ | .+.+.++....+
T Consensus 87 ---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g 136 (375)
T 2gfp_A 87 ---------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------L---RHANSLLNMGILVS 136 (375)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------C---CSHHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------H---HHHHHHHHHHHHHH
Confidence 35677888889999999999999999999887543 3 556777666666
Q ss_pred -hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319 163 -VAAIIPISYIK---PWNLRFGVSAICTVIATL 191 (348)
Q Consensus 163 -~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~ 191 (348)
.+++.+.+++. ||+..|.+.++..++..+
T Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 137 PLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 66666666554 999999988877766554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.77 E-value=1.4e-07 Score=90.94 Aligned_cols=164 Identities=13% Similarity=0.034 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cchHHHHHHHHHHh-hhhhhh
Q 048319 3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTII-SKYWMLVFSSLAYS-VGIGLL 79 (348)
Q Consensus 3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~l-Gr~~ti~~~~~i~~-~G~~ll 79 (348)
+..++-.++++++ ..+..|+++.+|++..+++.+...+.....+..+++|+++||+. ||++.+.++..+.. ++.+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 3455667788888 88889999889999999999999999999999999999999932 99999888887776 776666
Q ss_pred hcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHH
Q 048319 80 TMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLF 159 (348)
Q Consensus 80 ~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~ 159 (348)
.... ..+...+.+.+.+.+++.++.-+...++..|.+++++ + .+.+.++..
T Consensus 339 ~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~ 389 (451)
T 1pw4_A 339 WMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A---GTAAGFTGL 389 (451)
T ss_dssp TSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H---HHHHHHHHH
T ss_pred HHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h---hhHHHHHHH
Confidence 5431 0124556677778888888888888888888776432 2 445555544
Q ss_pred HHh----hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319 160 MVP----VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLS 195 (348)
Q Consensus 160 ~in----~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~ 195 (348)
..+ .+++.+.+++. ||...|.+.++..+++.++++.
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 444 45555555553 8999999988888877766554
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.70 E-value=2.1e-07 Score=89.54 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=114.4
Q ss_pred HHHHHHHHHhH-HHHHHH-hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319 5 LWADCLAQFVM-WTMMEY-LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS 82 (348)
Q Consensus 5 e~~Er~a~yg~-~~L~~Y-l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s 82 (348)
-++--.+++++ ..+..| +++.+|++..+++.....+.....+..+++|+++|| +||++.+.++.++..++.+++...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T 3o7q_A 267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHc
Confidence 34555667777 888889 888889999999999999999999999999999999 599999999999998888776653
Q ss_pred cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319 83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP 162 (348)
Q Consensus 83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in 162 (348)
. .. .....+.+++++.+..-|...++..|.++++ +.+ ...+........
T Consensus 346 ~----------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~g~ 394 (438)
T 3o7q_A 346 G----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-----TKY---GSSFIVMTIIGG 394 (438)
T ss_dssp C----------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-----HHH---HHHHHHHTTHHH
T ss_pred C----------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccc---hhhHHHHHHHHH
Confidence 1 11 2344557788888888888888888777643 112 222222111222
Q ss_pred hhcchhhcccc---c-chhhHHHHHHHHHHHHHHHH
Q 048319 163 VAAIIPISYIK---P-WNLRFGVSAICTVIATLLFL 194 (348)
Q Consensus 163 ~~~~~~~~yi~---g-~~~~F~i~~~~~~i~~~vf~ 194 (348)
.+++.+.+++. | |+.+|.+++++.++..+..+
T Consensus 395 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 56666666654 7 99999988777665554433
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.40 E-value=5.5e-07 Score=88.16 Aligned_cols=101 Identities=8% Similarity=-0.118 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC-c-cCCCCCCCCCCCCcccccchhH
Q 048319 31 VHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP-V-LAGFVGTCSEYKPECIVKGHKI 108 (348)
Q Consensus 31 ~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p-~-~~~~~~~c~~~~~~c~~~~~~~ 108 (348)
...+.+.+.+.....+.++++|+++||+ |||+++.++.+++.+|.++.+.+... . ..+ ... ....-..+..
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~~----~~~~~a~~~~ 127 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DNT----VPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SSS----CCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hhH----HHHHHhhhHH
Confidence 3445566777777888999999999995 99999999999999998877654220 0 000 000 0000123467
Q ss_pred HHHHHHHHHHHhcccCCcchhHHHHHhhhc
Q 048319 109 LFYAALGLLAFASSSCSVESTEFAEEQLEI 138 (348)
Q Consensus 109 ~~~~~L~liaiG~G~~k~~v~~~~adq~~~ 138 (348)
.++++..+.++|.|+.-+..+.+.+|..++
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~ 157 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 899999999999999999999999976653
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.33 E-value=1.5e-06 Score=85.26 Aligned_cols=167 Identities=7% Similarity=-0.005 Sum_probs=110.7
Q ss_pred HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH-----HHHHHHhhhhhhhhccc
Q 048319 10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLV-----FSSLAYSVGIGLLTMST 83 (348)
Q Consensus 10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~-----~~~~i~~~G~~ll~~s~ 83 (348)
..++.. ..+..|+.+.++.+...++.+.........+...+.|+++|| +|||+... ++.++..++.+++....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344445 667778887788876666666666666777778888999999 58875544 78888888887776542
Q ss_pred CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319 84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP- 162 (348)
Q Consensus 84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in- 162 (348)
...-.+ ...+...+.++..+.++|.+..-|...++..|.++++. + ......++...+
T Consensus 376 ~~~~~~-------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~ 433 (491)
T 4aps_A 376 ALYGTS-------------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------N---SQMMSMWFLSSSV 433 (491)
T ss_dssp HHCCCC-------------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------S---SSSTHHHHHHHHH
T ss_pred HhcCCC-------------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------H---HHHHHHHHHHHHH
Confidence 100000 01234566778888999999999999999998887653 2 334444445444
Q ss_pred --hhcchhhcccc--cchhhHHHHHHHHHHHHHHHHhcCcc
Q 048319 163 --VAAIIPISYIK--PWNLRFGVSAICTVIATLLFLSGTCT 199 (348)
Q Consensus 163 --~~~~~~~~yi~--g~~~~F~i~~~~~~i~~~vf~~g~~~ 199 (348)
.+++.+.+++. ++...|.+.++..+++.++++...++
T Consensus 434 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 434 GSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776777766 78888888777777776666655443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.20 E-value=1e-05 Score=78.30 Aligned_cols=148 Identities=12% Similarity=0.098 Sum_probs=89.2
Q ss_pred HHHHHHhhhhhCCc---hHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319 16 WTMMEYLTEVWKIS---VVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVG 92 (348)
Q Consensus 16 ~~L~~Yl~~~l~~~---~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~ 92 (348)
..+..|+.+.++.. ....+...........+..+++|+++|| +||++++.++..+..++.+++....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~--------- 310 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT--------- 310 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 44455666555432 2222333333333445667899999999 5999999999988888876664421
Q ss_pred CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHH-HHHh---hhcchh
Q 048319 93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLL-FMVP---VAAIIP 168 (348)
Q Consensus 93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y-~~in---~~~~~~ 168 (348)
+...+++...+.+++.+..-+...++.+|.++++. + .+.+.+.| .+.+ .+++.+
T Consensus 311 -------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 311 -------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S---ATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp -------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H---HHHHHHHHTTTHHHHHHHHTHH
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H---HHHHHHHHHHHHhHHHHHhhhh
Confidence 12334444445556655555556677777665431 2 44455532 2222 566666
Q ss_pred hcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319 169 ISYIK---PWNLRFGVSAICTVIATLLFLS 195 (348)
Q Consensus 169 ~~yi~---g~~~~F~i~~~~~~i~~~vf~~ 195 (348)
.+++- ||...|.+.++..+++.++.+.
T Consensus 369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 66553 7888898888777777665543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.06 E-value=3e-07 Score=89.08 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=57.6
Q ss_pred HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhh
Q 048319 9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76 (348)
Q Consensus 9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~ 76 (348)
-+++..+ ..+..|+++.+|++..+++.+.+.+.....+..+++|+++|| +||||++.++..+..++.
T Consensus 20 ~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH
Confidence 3444455 678889998899999999999999999999999999999999 599999999988876643
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.03 E-value=0.00011 Score=71.71 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=96.2
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319 19 MEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK 98 (348)
Q Consensus 19 ~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~ 98 (348)
..++.+..+.+...+............+..++++++.|| +|||+.++.+.....++++.+.......
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~------------ 366 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ------------ 366 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcc------------
Confidence 344555678888877777677777788888999999999 5999999999999888887766542210
Q ss_pred CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--
Q 048319 99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-- 173 (348)
Q Consensus 99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-- 173 (348)
...........++..+.+. +.-|....+.+|.|+.+- | .....+-+...+ .+++.+.+++.
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R---~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 367 ----APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------R---GKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp ----CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------H---HHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred ----cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011122222222233332 344666778888887542 3 334444443333 44444444442
Q ss_pred -------cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHH
Q 048319 174 -------PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSV 213 (348)
Q Consensus 174 -------g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~ 213 (348)
++...|.+-++..+++.++.++--| +.+|.++.++
T Consensus 433 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P-----ETkg~tLeei 474 (491)
T 4gc0_A 433 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP-----ETKGKTLEEL 474 (491)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC-----CCTTCCHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHheec-----CCCCCCHHHH
Confidence 4556677766666666554443333 2335666554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.70 E-value=4.2e-05 Score=71.99 Aligned_cols=150 Identities=8% Similarity=-0.103 Sum_probs=97.1
Q ss_pred HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH-Hhhhhhhhhccc
Q 048319 6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLA-YSVGIGLLTMST 83 (348)
Q Consensus 6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i-~~~G~~ll~~s~ 83 (348)
++-.++++++ ..+..|+++.+|++..+++.+.........+..++.++++||+ |+ .+..+..+ ...+..++....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~--~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH--HHHHHHHHHHHTSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhh
Confidence 4444555666 6666677777899999999988888888888888888888884 66 23333333 444444333221
Q ss_pred CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319 84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP- 162 (348)
Q Consensus 84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in- 162 (348)
.+ ..+...++++..+.++|.|...|...+...|.+++ + + .+.+..+....+
T Consensus 286 ~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-~------~---g~~~g~~~~~~~~ 337 (375)
T 2gfp_A 286 FG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF-L------A---GTAGALVGGLQNI 337 (375)
T ss_dssp HH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH-H------H---HHHHHHHHHHHHH
T ss_pred hc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc-c------c---chHHHHHHHHHHH
Confidence 00 01345566777888999999999999999988752 1 2 445555555555
Q ss_pred --hhcchhhcccc---cchhhHHHHHHHH
Q 048319 163 --VAAIIPISYIK---PWNLRFGVSAICT 186 (348)
Q Consensus 163 --~~~~~~~~yi~---g~~~~F~i~~~~~ 186 (348)
.+++.+.+++. +|...|.+..+.+
T Consensus 338 g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 338 GSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 56666665553 6777777654443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.82 E-value=0.0063 Score=59.72 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh
Q 048319 63 WMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE 142 (348)
Q Consensus 63 ~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~ 142 (348)
+.+.++.++..++.+++.......-.+ ...+...+.++..+.++|.+..-|...++..|..+++.
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-- 438 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGG-------------SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM-- 438 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTT-------------CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--
Confidence 567778888888887766542100000 01123556677888999999998999999998877543
Q ss_pred hhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-----cc---------hhhHHHHHHHHHHHHHHHHhcCccc
Q 048319 143 HISLSLIQREFFKLLLFMVP---VAAIIPISYIK-----PW---------NLRFGVSAICTVIATLLFLSGTCTY 200 (348)
Q Consensus 143 e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-----g~---------~~~F~i~~~~~~i~~~vf~~g~~~y 200 (348)
+ .+...+++...+ .+++.+.+++. +| ...|.+.++..+++.++++...+++
T Consensus 439 ----~---g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 439 ----K---GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp ----C---TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ----H---hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 334444444433 66666666554 34 2337777777777666665544444
Done!