BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048321
         (641 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
 pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
 pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
 pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
          Length = 364

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN-IRTM-MKRNQVKKFPGQSLFHINGKT 596
           A C+ K+EP    P       Y    + + +   IRT  +K   V K+ G  L   NGK+
Sbjct: 66  APCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKS 125

Query: 597 CTFTAEDRYHAESELTY 613
             F   DR+ ++ +  Y
Sbjct: 126 YRFMIMDRFGSDLQKIY 142


>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
          Length = 361

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN-IRTM-MKRNQVKKFPGQSLFHINGKT 596
           A C+ K+EP    P       Y    + + +   IRT  +K   V K+ G  L   NGK+
Sbjct: 66  APCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKS 125

Query: 597 CTFTAEDRYHAESELTY 613
             F   DR+ ++ +  Y
Sbjct: 126 YRFMIMDRFGSDLQKIY 142


>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
 pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
           1(Vrk1)
          Length = 368

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN-IRTM-MKRNQVKKFPGQSLFHINGKT 596
           A C+ K+EP    P       Y    + + +   IRT  +K   V K+ G  L   NGK+
Sbjct: 66  APCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKS 125

Query: 597 CTFTAEDRYHAESELTY 613
             F   DR+ ++ +  Y
Sbjct: 126 YRFMIMDRFGSDLQKIY 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,631,972
Number of Sequences: 62578
Number of extensions: 729570
Number of successful extensions: 1806
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1806
Number of HSP's gapped (non-prelim): 3
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)