Query 048321
Match_columns 641
No_of_seqs 752 out of 4099
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 08:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-107 2E-112 905.1 72.6 627 3-636 137-777 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.5E-90 5.5E-95 748.6 62.9 532 103-638 84-616 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.4E-82 9.5E-87 700.8 63.9 607 16-634 49-728 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.7E-68 5.9E-73 576.8 53.5 456 16-477 85-558 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.1E-67 2.4E-72 573.3 58.1 534 86-634 381-960 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.2E-67 2.5E-72 573.1 57.1 504 16-546 368-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-34 9.3E-39 325.1 60.4 544 21-577 331-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-33 8.6E-38 317.2 61.7 540 27-580 269-867 (899)
9 PRK11447 cellulose synthase su 100.0 2.4E-24 5.2E-29 245.4 60.2 540 21-578 64-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-22 2.8E-27 231.3 58.8 537 24-579 33-666 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.5E-20 3.3E-25 204.6 58.8 529 32-580 57-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 7.7E-23 1.7E-27 197.2 32.9 452 110-576 52-516 (966)
13 PRK09782 bacteriophage N4 rece 99.9 3.1E-20 6.8E-25 202.1 53.7 547 7-578 68-739 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-19 5.3E-24 192.1 42.4 417 147-579 133-571 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.4E-25 182.5 28.2 418 147-579 54-485 (966)
16 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.8E-24 184.6 28.3 293 288-587 44-355 (389)
17 PRK11788 tetratricopeptide rep 99.9 2.1E-19 4.6E-24 183.0 29.0 312 113-464 42-365 (389)
18 KOG2002 TPR-containing nuclear 99.9 2.3E-17 5E-22 168.3 42.9 564 4-581 147-800 (1018)
19 PRK15174 Vi polysaccharide exp 99.9 5.4E-18 1.2E-22 181.0 39.7 354 187-550 16-386 (656)
20 PRK10049 pgaA outer membrane p 99.9 3.3E-17 7.2E-22 178.8 44.5 399 145-577 19-454 (765)
21 PRK10049 pgaA outer membrane p 99.9 1.7E-17 3.6E-22 181.2 42.0 372 174-580 13-423 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.5E-17 5.4E-22 176.7 40.2 442 108-578 129-596 (615)
23 PRK15174 Vi polysaccharide exp 99.8 3.4E-17 7.4E-22 174.9 37.5 327 243-580 41-382 (656)
24 KOG2002 TPR-containing nuclear 99.8 5.9E-16 1.3E-20 158.1 42.5 533 35-579 146-745 (1018)
25 KOG4422 Uncharacterized conser 99.8 9.2E-16 2E-20 142.5 39.8 435 21-510 118-587 (625)
26 PRK14574 hmsH outer membrane p 99.8 6.3E-16 1.4E-20 165.3 43.9 426 116-551 44-519 (822)
27 PRK14574 hmsH outer membrane p 99.8 3.9E-15 8.5E-20 159.3 44.1 421 151-578 44-512 (822)
28 KOG2003 TPR repeat-containing 99.8 2E-15 4.4E-20 141.2 28.2 445 114-565 209-709 (840)
29 KOG0495 HAT repeat protein [RN 99.7 1.5E-12 3.2E-17 127.8 47.3 528 33-579 265-846 (913)
30 KOG0495 HAT repeat protein [RN 99.7 7.8E-12 1.7E-16 122.8 50.1 465 114-593 414-892 (913)
31 KOG4422 Uncharacterized conser 99.7 1.3E-13 2.8E-18 128.4 35.7 326 105-477 115-463 (625)
32 PF13429 TPR_15: Tetratricopep 99.7 5.2E-16 1.1E-20 149.5 11.1 255 317-577 15-275 (280)
33 KOG2076 RNA polymerase III tra 99.6 3.6E-11 7.7E-16 123.0 43.7 473 88-565 152-720 (895)
34 KOG2003 TPR repeat-containing 99.6 1.8E-13 3.9E-18 128.3 24.4 428 143-578 200-688 (840)
35 KOG4318 Bicoid mRNA stability 99.6 9.7E-12 2.1E-16 126.3 35.9 518 40-591 11-605 (1088)
36 KOG2076 RNA polymerase III tra 99.6 2.6E-12 5.7E-17 131.1 31.5 328 258-589 153-522 (895)
37 KOG0547 Translocase of outer m 99.6 7.3E-12 1.6E-16 119.1 31.0 212 358-577 339-564 (606)
38 KOG1915 Cell cycle control pro 99.6 3.4E-10 7.5E-15 107.4 39.3 481 86-578 84-624 (677)
39 PRK10747 putative protoheme IX 99.5 7.2E-12 1.6E-16 126.3 28.3 275 292-578 97-389 (398)
40 KOG1915 Cell cycle control pro 99.5 8.4E-10 1.8E-14 104.8 39.1 460 105-577 72-583 (677)
41 PRK10747 putative protoheme IX 99.5 8.4E-12 1.8E-16 125.9 28.1 224 286-545 160-390 (398)
42 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.2E-17 128.8 21.4 273 294-578 334-619 (638)
43 KOG1126 DNA-binding cell divis 99.5 2.8E-12 6E-17 127.0 21.7 245 325-579 334-586 (638)
44 KOG1155 Anaphase-promoting com 99.5 8.1E-10 1.7E-14 104.8 35.7 159 312-474 332-494 (559)
45 TIGR00540 hemY_coli hemY prote 99.5 3.9E-11 8.5E-16 121.8 29.2 126 445-576 262-396 (409)
46 KOG1173 Anaphase-promoting com 99.5 4.9E-10 1.1E-14 109.0 34.7 257 315-578 249-517 (611)
47 TIGR00540 hemY_coli hemY prote 99.5 1.3E-10 2.8E-15 118.0 32.7 286 221-544 96-398 (409)
48 KOG1155 Anaphase-promoting com 99.5 3.8E-10 8.3E-15 106.9 32.4 316 252-578 172-494 (559)
49 KOG4318 Bicoid mRNA stability 99.5 2.3E-11 5.1E-16 123.6 26.1 437 127-578 11-556 (1088)
50 PF13429 TPR_15: Tetratricopep 99.5 3.7E-13 8.1E-18 129.7 11.6 252 216-472 15-274 (280)
51 TIGR02521 type_IV_pilW type IV 99.4 2.7E-11 5.9E-16 113.7 22.0 198 378-578 29-231 (234)
52 KOG2047 mRNA splicing factor [ 99.4 9.4E-08 2E-12 94.6 45.1 509 21-565 104-709 (835)
53 KOG1174 Anaphase-promoting com 99.4 4.8E-09 1E-13 98.1 32.6 301 242-550 192-505 (564)
54 KOG4162 Predicted calmodulin-b 99.4 1.2E-08 2.6E-13 103.1 37.1 399 173-579 320-783 (799)
55 KOG1173 Anaphase-promoting com 99.4 2.2E-09 4.7E-14 104.6 30.2 282 275-561 240-534 (611)
56 COG3071 HemY Uncharacterized e 99.4 4E-09 8.6E-14 98.7 29.8 301 111-445 87-395 (400)
57 KOG0547 Translocase of outer m 99.3 4.4E-09 9.6E-14 100.5 30.4 410 108-545 117-566 (606)
58 KOG3785 Uncharacterized conser 99.3 3.6E-08 7.7E-13 90.5 34.4 452 88-579 35-514 (557)
59 KOG2047 mRNA splicing factor [ 99.3 2E-07 4.3E-12 92.4 41.9 497 12-540 131-718 (835)
60 PF13041 PPR_2: PPR repeat fam 99.3 2.9E-12 6.2E-17 86.2 6.1 50 104-153 1-50 (50)
61 COG2956 Predicted N-acetylgluc 99.3 3.9E-09 8.4E-14 95.7 27.5 265 222-495 48-326 (389)
62 COG3071 HemY Uncharacterized e 99.3 2.6E-09 5.6E-14 99.9 27.1 276 292-577 97-388 (400)
63 PF13041 PPR_2: PPR repeat fam 99.3 3.8E-12 8.2E-17 85.6 5.5 50 16-66 1-50 (50)
64 KOG1840 Kinesin light chain [C 99.3 5E-10 1.1E-14 112.4 22.7 232 346-577 200-477 (508)
65 COG2956 Predicted N-acetylgluc 99.3 2.1E-09 4.5E-14 97.4 24.1 311 257-601 48-369 (389)
66 PRK12370 invasion protein regu 99.3 6.1E-10 1.3E-14 117.5 22.5 175 395-578 319-501 (553)
67 PRK12370 invasion protein regu 99.2 2.4E-09 5.3E-14 113.0 25.6 244 325-580 276-536 (553)
68 KOG2376 Signal recognition par 99.2 1.6E-07 3.4E-12 92.4 34.9 434 113-575 19-516 (652)
69 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-09 3.7E-14 104.3 21.5 212 358-580 39-266 (296)
70 TIGR02521 type_IV_pilW type IV 99.2 2.7E-09 5.9E-14 100.1 22.5 199 311-546 32-233 (234)
71 KOG1129 TPR repeat-containing 99.2 6.1E-10 1.3E-14 100.8 15.6 228 314-580 227-459 (478)
72 COG3063 PilF Tfp pilus assembl 99.2 1.5E-09 3.2E-14 94.0 17.2 163 413-581 37-204 (250)
73 KOG1840 Kinesin light chain [C 99.2 3.2E-08 6.9E-13 99.6 28.3 236 280-543 200-477 (508)
74 KOG1156 N-terminal acetyltrans 99.2 2.8E-07 6.2E-12 91.6 33.9 101 481-581 366-470 (700)
75 KOG4162 Predicted calmodulin-b 99.1 9.4E-07 2E-11 89.8 36.1 409 132-551 314-789 (799)
76 PRK11189 lipoprotein NlpI; Pro 99.1 2E-08 4.3E-13 97.0 24.0 233 323-565 39-286 (296)
77 PF12569 NARP1: NMDA receptor- 99.1 1.1E-06 2.4E-11 89.8 37.4 432 114-575 12-516 (517)
78 KOG0985 Vesicle coat protein c 99.1 3.6E-06 7.9E-11 87.8 40.3 143 411-576 1104-1246(1666)
79 KOG1174 Anaphase-promoting com 99.1 9.5E-07 2.1E-11 83.1 32.4 408 28-446 52-504 (564)
80 KOG1156 N-terminal acetyltrans 99.1 1.7E-06 3.7E-11 86.2 35.8 453 108-576 10-508 (700)
81 KOG3616 Selective LIM binding 99.1 3.1E-07 6.7E-12 92.2 30.3 17 29-45 454-470 (1636)
82 KOG3617 WD40 and TPR repeat-co 99.1 6E-06 1.3E-10 84.4 39.2 243 21-305 728-993 (1416)
83 KOG3785 Uncharacterized conser 99.1 1.6E-07 3.5E-12 86.3 25.4 453 26-526 29-504 (557)
84 KOG0548 Molecular co-chaperone 99.1 3.8E-07 8.3E-12 88.9 28.4 411 149-580 10-456 (539)
85 KOG2376 Signal recognition par 99.1 2.3E-06 5E-11 84.5 33.5 213 25-274 18-254 (652)
86 KOG1125 TPR repeat-containing 99.0 1.3E-08 2.8E-13 99.8 17.8 219 355-578 295-526 (579)
87 KOG1129 TPR repeat-containing 99.0 8.9E-09 1.9E-13 93.4 15.1 227 278-511 222-456 (478)
88 KOG1127 TPR repeat-containing 98.9 2.7E-06 5.9E-11 88.8 31.1 533 21-577 494-1102(1238)
89 COG3063 PilF Tfp pilus assembl 98.9 3E-07 6.5E-12 80.0 20.3 189 354-548 44-239 (250)
90 PF04733 Coatomer_E: Coatomer 98.9 6.7E-08 1.4E-12 91.8 17.5 161 380-549 102-269 (290)
91 KOG0985 Vesicle coat protein c 98.9 0.00016 3.5E-09 76.0 41.8 461 90-579 524-1162(1666)
92 KOG3616 Selective LIM binding 98.9 1.3E-05 2.9E-10 80.9 33.1 353 181-577 620-1022(1636)
93 PF04733 Coatomer_E: Coatomer 98.9 2.6E-08 5.5E-13 94.7 13.1 246 318-579 9-265 (290)
94 KOG4340 Uncharacterized conser 98.9 2.9E-06 6.3E-11 76.5 24.9 408 142-578 11-442 (459)
95 PF12569 NARP1: NMDA receptor- 98.9 1.4E-06 3.1E-11 89.0 26.2 127 347-474 196-333 (517)
96 cd05804 StaR_like StaR_like; a 98.8 9.3E-06 2E-10 81.6 30.7 256 319-579 52-336 (355)
97 KOG1127 TPR repeat-containing 98.8 5.4E-06 1.2E-10 86.7 25.9 380 177-575 493-909 (1238)
98 PRK15359 type III secretion sy 98.8 2.6E-07 5.7E-12 78.3 14.0 92 487-578 27-120 (144)
99 PRK10370 formate-dependent nit 98.8 6.5E-07 1.4E-11 80.3 17.2 147 418-580 23-174 (198)
100 TIGR03302 OM_YfiO outer membra 98.8 9E-07 1.9E-11 83.0 19.0 179 379-579 32-232 (235)
101 KOG3617 WD40 and TPR repeat-co 98.8 1E-05 2.2E-10 82.7 26.9 354 174-576 724-1106(1416)
102 KOG0624 dsRNA-activated protei 98.8 1.9E-05 4.1E-10 72.8 26.2 315 209-549 38-374 (504)
103 cd05804 StaR_like StaR_like; a 98.7 2.7E-05 5.9E-10 78.2 29.9 191 352-545 121-336 (355)
104 PRK15359 type III secretion sy 98.7 2.7E-07 5.8E-12 78.3 12.7 123 432-562 14-138 (144)
105 PRK04841 transcriptional regul 98.7 0.00011 2.4E-09 83.9 38.0 257 320-578 462-759 (903)
106 KOG4340 Uncharacterized conser 98.7 0.00012 2.7E-09 66.3 28.7 165 105-276 43-210 (459)
107 KOG0624 dsRNA-activated protei 98.7 3.5E-05 7.6E-10 71.1 25.2 303 181-511 43-368 (504)
108 KOG0548 Molecular co-chaperone 98.7 1.7E-05 3.6E-10 77.8 24.3 429 86-563 13-473 (539)
109 PRK04841 transcriptional regul 98.6 0.0001 2.2E-09 84.3 34.3 87 389-475 662-760 (903)
110 PLN02789 farnesyltranstransfer 98.6 9.8E-06 2.1E-10 78.2 22.0 210 360-576 52-299 (320)
111 KOG1070 rRNA processing protei 98.6 3.3E-06 7E-11 91.2 19.9 199 377-582 1455-1666(1710)
112 COG5010 TadD Flp pilus assembl 98.6 2.3E-06 5E-11 76.3 15.9 125 450-578 70-196 (257)
113 PRK15363 pathogenicity island 98.6 7.8E-07 1.7E-11 73.9 11.4 119 482-623 33-153 (157)
114 KOG1125 TPR repeat-containing 98.6 6.2E-06 1.3E-10 81.4 19.0 215 255-474 296-526 (579)
115 PF12854 PPR_1: PPR repeat 98.6 8.5E-08 1.8E-12 57.6 3.8 33 171-203 2-34 (34)
116 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.9E-12 56.8 4.3 33 375-407 2-34 (34)
117 KOG1914 mRNA cleavage and poly 98.5 0.0012 2.7E-08 65.1 36.0 447 104-576 18-536 (656)
118 PRK10370 formate-dependent nit 98.5 1.2E-05 2.5E-10 72.2 18.0 155 387-554 23-182 (198)
119 PRK15179 Vi polysaccharide bio 98.5 8.1E-06 1.7E-10 86.9 19.4 137 410-552 85-224 (694)
120 KOG1128 Uncharacterized conser 98.5 4.6E-06 9.9E-11 84.5 16.2 207 354-580 407-617 (777)
121 KOG1128 Uncharacterized conser 98.5 5.2E-06 1.1E-10 84.1 16.2 189 375-580 393-583 (777)
122 COG5010 TadD Flp pilus assembl 98.5 1.1E-05 2.4E-10 72.0 16.5 156 415-575 70-227 (257)
123 COG4783 Putative Zn-dependent 98.5 6.5E-05 1.4E-09 73.2 22.8 112 458-573 318-431 (484)
124 COG4783 Putative Zn-dependent 98.5 2.7E-05 5.8E-10 75.7 20.0 145 412-580 307-455 (484)
125 TIGR02552 LcrH_SycD type III s 98.5 1.8E-06 3.8E-11 73.0 10.8 96 484-579 17-114 (135)
126 KOG3081 Vesicle coat complex C 98.4 0.00018 3.9E-09 64.4 22.7 175 366-549 94-275 (299)
127 TIGR03302 OM_YfiO outer membra 98.4 1.3E-05 2.8E-10 75.1 17.2 182 343-547 31-234 (235)
128 PLN02789 farnesyltranstransfer 98.4 3.1E-05 6.7E-10 74.8 19.4 186 387-578 44-249 (320)
129 KOG1070 rRNA processing protei 98.4 5.1E-05 1.1E-09 82.4 22.0 201 343-546 1455-1664(1710)
130 PRK15179 Vi polysaccharide bio 98.3 7.4E-05 1.6E-09 79.7 21.6 143 376-524 82-230 (694)
131 KOG3060 Uncharacterized conser 98.3 9.3E-05 2E-09 65.7 18.2 168 382-554 54-229 (289)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 9.2E-06 2E-10 79.9 13.0 123 448-577 171-295 (395)
133 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.1E-11 53.3 4.4 35 107-141 1-35 (35)
134 PRK14720 transcript cleavage f 98.3 0.00026 5.6E-09 76.5 23.9 43 519-561 226-268 (906)
135 KOG3081 Vesicle coat complex C 98.3 0.00028 6.1E-09 63.2 19.8 169 332-511 95-269 (299)
136 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.3E-11 52.7 4.5 34 21-54 2-35 (35)
137 KOG1914 mRNA cleavage and poly 98.2 0.0071 1.5E-07 60.0 37.2 144 361-510 347-498 (656)
138 TIGR02552 LcrH_SycD type III s 98.2 2.9E-05 6.4E-10 65.4 12.6 114 433-552 5-121 (135)
139 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.2E-11 51.5 4.2 34 106-139 1-34 (34)
140 KOG3060 Uncharacterized conser 98.1 0.00025 5.3E-09 63.1 16.5 162 413-580 54-221 (289)
141 PF13812 PPR_3: Pentatricopept 98.1 4.3E-06 9.4E-11 50.7 4.2 32 21-52 3-34 (34)
142 KOG2053 Mitochondrial inherita 98.1 0.019 4.2E-07 60.6 40.1 510 30-579 20-608 (932)
143 PF09976 TPR_21: Tetratricopep 98.1 7.3E-05 1.6E-09 63.7 13.1 114 459-575 24-143 (145)
144 PLN03088 SGT1, suppressor of 98.1 2.6E-05 5.6E-10 77.3 11.7 85 494-578 12-98 (356)
145 KOG0553 TPR repeat-containing 98.1 1.4E-05 3.1E-10 72.8 8.8 90 456-550 91-183 (304)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0001 2.2E-09 72.7 15.4 124 381-511 170-295 (395)
147 cd00189 TPR Tetratricopeptide 98.1 2.6E-05 5.5E-10 60.9 9.1 93 487-579 3-97 (100)
148 PRK14720 transcript cleavage f 98.0 0.00076 1.7E-08 72.9 21.7 237 137-422 26-268 (906)
149 PF12895 Apc3: Anaphase-promot 98.0 2.8E-06 6E-11 64.6 2.4 78 497-575 2-83 (84)
150 PF13414 TPR_11: TPR repeat; P 98.0 1.3E-05 2.7E-10 58.3 5.0 64 515-578 2-66 (69)
151 KOG0550 Molecular chaperone (D 97.9 0.00043 9.3E-09 65.9 15.5 152 420-579 178-350 (486)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 8.3E-05 1.8E-09 61.0 10.0 94 486-579 4-105 (119)
153 PF13432 TPR_16: Tetratricopep 97.9 1.9E-05 4.2E-10 56.5 5.1 58 522-579 3-60 (65)
154 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.2E-10 47.1 3.6 31 107-137 1-31 (31)
155 PF14559 TPR_19: Tetratricopep 97.9 1.8E-05 3.9E-10 57.3 4.8 52 527-578 2-53 (68)
156 COG4235 Cytochrome c biogenesi 97.9 0.0001 2.2E-09 67.9 10.5 100 482-581 154-258 (287)
157 PRK15331 chaperone protein Sic 97.9 0.00033 7.2E-09 58.7 12.1 92 487-578 40-133 (165)
158 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 4E-10 46.7 3.5 30 21-50 2-31 (31)
159 PF09976 TPR_21: Tetratricopep 97.8 0.00096 2.1E-08 56.8 15.2 124 413-542 14-144 (145)
160 PF04840 Vps16_C: Vps16, C-ter 97.8 0.034 7.3E-07 53.8 27.1 107 384-509 181-287 (319)
161 KOG0553 TPR repeat-containing 97.8 0.00011 2.5E-09 67.1 9.4 96 419-521 89-187 (304)
162 PLN03088 SGT1, suppressor of 97.8 0.00024 5.1E-09 70.5 12.5 105 455-563 11-117 (356)
163 PRK10153 DNA-binding transcrip 97.8 0.00079 1.7E-08 69.8 16.6 138 409-550 335-487 (517)
164 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00028 6.1E-09 57.8 10.9 102 449-552 5-112 (119)
165 PF05843 Suf: Suppressor of fo 97.8 0.00073 1.6E-08 64.6 14.9 133 412-549 2-140 (280)
166 PRK02603 photosystem I assembl 97.8 0.0007 1.5E-08 59.6 13.3 130 411-565 35-166 (172)
167 PRK02603 photosystem I assembl 97.8 0.00022 4.9E-09 62.8 10.1 82 484-565 35-121 (172)
168 CHL00033 ycf3 photosystem I as 97.7 0.0002 4.3E-09 62.9 9.4 93 484-576 35-139 (168)
169 cd00189 TPR Tetratricopeptide 97.7 0.00033 7.2E-09 54.4 9.7 89 455-547 9-99 (100)
170 PF07079 DUF1347: Protein of u 97.7 0.065 1.4E-06 52.4 32.0 420 87-521 18-530 (549)
171 PF13371 TPR_9: Tetratricopept 97.6 0.00015 3.2E-09 53.3 6.1 58 523-580 2-59 (73)
172 PF13431 TPR_17: Tetratricopep 97.6 2.4E-05 5.1E-10 47.0 1.4 33 539-571 2-34 (34)
173 CHL00033 ycf3 photosystem I as 97.6 0.003 6.4E-08 55.4 15.0 124 411-566 35-167 (168)
174 PF13432 TPR_16: Tetratricopep 97.6 9.5E-05 2.1E-09 52.9 4.4 61 490-550 3-65 (65)
175 KOG2053 Mitochondrial inherita 97.6 0.16 3.5E-06 54.0 39.8 115 87-204 21-142 (932)
176 PRK10866 outer membrane biogen 97.5 0.008 1.7E-07 55.9 17.4 171 386-577 38-239 (243)
177 COG4700 Uncharacterized protei 97.5 0.011 2.5E-07 50.1 16.2 132 443-578 86-221 (251)
178 PF14559 TPR_19: Tetratricopep 97.5 0.0001 2.2E-09 53.3 3.6 57 497-553 4-62 (68)
179 PRK10153 DNA-binding transcrip 97.5 0.0029 6.3E-08 65.6 15.0 134 441-580 332-483 (517)
180 PF12895 Apc3: Anaphase-promot 97.5 0.00037 7.9E-09 52.8 6.5 80 424-508 2-82 (84)
181 KOG2041 WD40 repeat protein [G 97.5 0.079 1.7E-06 54.4 24.1 217 2-267 678-901 (1189)
182 PF13414 TPR_11: TPR repeat; P 97.5 0.00025 5.4E-09 51.4 5.1 65 483-547 2-69 (69)
183 KOG1538 Uncharacterized conser 97.4 0.035 7.7E-07 56.3 20.8 183 267-516 623-806 (1081)
184 COG4700 Uncharacterized protei 97.4 0.0043 9.3E-08 52.6 12.3 101 480-580 85-190 (251)
185 COG3898 Uncharacterized membra 97.4 0.14 3E-06 49.1 27.5 281 282-578 85-391 (531)
186 KOG0543 FKBP-type peptidyl-pro 97.4 0.0012 2.5E-08 63.4 9.6 83 517-625 258-340 (397)
187 PF08579 RPM2: Mitochondrial r 97.3 0.0026 5.6E-08 49.2 9.3 79 110-188 29-116 (120)
188 PF04840 Vps16_C: Vps16, C-ter 97.3 0.18 3.8E-06 48.9 27.2 111 447-576 178-288 (319)
189 COG3898 Uncharacterized membra 97.3 0.056 1.2E-06 51.7 19.6 179 393-579 97-292 (531)
190 PRK10803 tol-pal system protei 97.3 0.0015 3.3E-08 61.1 9.5 94 486-579 145-246 (263)
191 PF10037 MRP-S27: Mitochondria 97.3 0.0031 6.6E-08 62.7 11.7 118 175-292 65-186 (429)
192 PRK15363 pathogenicity island 97.2 0.01 2.2E-07 49.8 12.7 90 452-546 41-133 (157)
193 PF08579 RPM2: Mitochondrial r 97.2 0.0046 9.9E-08 47.9 9.7 80 313-392 28-116 (120)
194 KOG0550 Molecular chaperone (D 97.2 0.03 6.4E-07 53.9 16.8 99 457-556 260-360 (486)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0013 2.8E-08 64.7 8.1 65 515-579 74-141 (453)
196 PF10037 MRP-S27: Mitochondria 97.2 0.0093 2E-07 59.4 14.1 117 342-458 63-185 (429)
197 PF14938 SNAP: Soluble NSF att 97.2 0.0069 1.5E-07 58.2 12.9 134 414-551 78-231 (282)
198 PF13428 TPR_14: Tetratricopep 97.2 0.00057 1.2E-08 44.0 3.7 42 517-558 2-43 (44)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.0031 6.6E-08 50.9 8.5 85 491-575 8-100 (120)
200 PF05843 Suf: Suppressor of fo 97.1 0.012 2.5E-07 56.4 14.0 139 312-454 3-148 (280)
201 PF13371 TPR_9: Tetratricopept 97.1 0.0013 2.9E-08 48.1 5.6 63 492-554 3-67 (73)
202 PF12688 TPR_5: Tetratrico pep 97.1 0.014 3E-07 47.1 11.6 91 417-509 7-100 (120)
203 KOG2280 Vacuolar assembly/sort 97.0 0.57 1.2E-05 49.0 26.1 117 441-575 679-795 (829)
204 PF06239 ECSIT: Evolutionarily 97.0 0.0061 1.3E-07 53.5 9.4 126 7-169 34-167 (228)
205 KOG2796 Uncharacterized conser 97.0 0.048 1E-06 49.2 14.7 139 312-452 179-325 (366)
206 PF14938 SNAP: Soluble NSF att 96.9 0.29 6.3E-06 47.0 21.7 98 314-411 159-268 (282)
207 KOG2796 Uncharacterized conser 96.9 0.087 1.9E-06 47.6 16.1 176 383-558 139-328 (366)
208 PRK10866 outer membrane biogen 96.8 0.1 2.2E-06 48.6 16.9 54 286-339 39-98 (243)
209 PRK10803 tol-pal system protei 96.7 0.023 5.1E-07 53.3 12.0 101 448-550 145-251 (263)
210 KOG4555 TPR repeat-containing 96.7 0.011 2.3E-07 47.0 7.9 89 492-580 51-145 (175)
211 PF14432 DYW_deaminase: DYW fa 96.7 0.0014 3.1E-08 52.5 3.2 39 586-636 2-40 (116)
212 KOG2280 Vacuolar assembly/sort 96.6 1.1 2.5E-05 46.9 28.2 341 134-509 425-795 (829)
213 KOG1130 Predicted G-alpha GTPa 96.6 0.013 2.9E-07 56.0 9.3 128 448-577 197-342 (639)
214 PF06239 ECSIT: Evolutionarily 96.6 0.026 5.6E-07 49.7 10.4 96 401-499 35-153 (228)
215 PF03704 BTAD: Bacterial trans 96.6 0.031 6.7E-07 47.6 10.7 108 457-578 17-124 (146)
216 KOG1130 Predicted G-alpha GTPa 96.5 0.015 3.3E-07 55.7 9.1 258 115-373 26-343 (639)
217 PF13281 DUF4071: Domain of un 96.5 0.29 6.2E-06 48.0 17.9 160 385-549 146-338 (374)
218 PF13424 TPR_12: Tetratricopep 96.5 0.0027 5.8E-08 47.2 3.4 60 518-577 7-73 (78)
219 PF13525 YfiO: Outer membrane 96.5 0.12 2.5E-06 46.9 14.6 140 416-579 10-170 (203)
220 COG0457 NrfG FOG: TPR repeat [ 96.5 0.69 1.5E-05 42.6 25.8 196 380-579 59-265 (291)
221 PF09205 DUF1955: Domain of un 96.4 0.29 6.3E-06 39.3 14.1 140 422-582 13-152 (161)
222 COG4235 Cytochrome c biogenesi 96.4 0.2 4.3E-06 46.7 15.1 102 445-550 155-261 (287)
223 PRK11906 transcriptional regul 96.4 0.044 9.5E-07 54.3 11.5 157 412-573 252-430 (458)
224 KOG1538 Uncharacterized conser 96.3 0.42 9E-06 49.0 17.8 92 108-204 558-660 (1081)
225 PRK11906 transcriptional regul 96.3 0.25 5.4E-06 49.2 16.0 118 461-580 273-402 (458)
226 KOG1258 mRNA processing protei 96.2 1.7 3.8E-05 44.6 30.7 410 105-564 44-489 (577)
227 PF07079 DUF1347: Protein of u 96.2 1.4 3.1E-05 43.5 34.8 61 517-578 461-523 (549)
228 PF13424 TPR_12: Tetratricopep 96.1 0.0058 1.2E-07 45.4 3.4 60 486-545 7-75 (78)
229 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.6 3.5E-05 43.0 30.4 134 411-549 397-535 (660)
230 KOG0543 FKBP-type peptidyl-pro 96.1 0.053 1.1E-06 52.4 10.1 138 418-579 215-355 (397)
231 KOG2041 WD40 repeat protein [G 96.0 2.4 5.2E-05 44.2 26.4 40 92-133 680-719 (1189)
232 COG1729 Uncharacterized protei 95.8 0.038 8.2E-07 50.7 7.8 58 522-579 184-244 (262)
233 PF13512 TPR_18: Tetratricopep 95.8 0.15 3.3E-06 42.0 10.4 88 492-579 18-128 (142)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.05 1.1E-06 53.9 9.0 63 483-545 74-141 (453)
235 COG0457 NrfG FOG: TPR repeat [ 95.8 1.6 3.4E-05 40.1 24.6 197 346-548 60-268 (291)
236 PF13525 YfiO: Outer membrane 95.7 1.5 3.2E-05 39.7 17.6 56 318-373 13-70 (203)
237 COG3118 Thioredoxin domain-con 95.6 0.47 1E-05 44.1 13.9 120 455-579 143-265 (304)
238 KOG1941 Acetylcholine receptor 95.5 0.11 2.4E-06 49.2 9.4 163 413-575 85-271 (518)
239 PF10300 DUF3808: Protein of u 95.5 0.65 1.4E-05 48.1 16.1 115 459-578 246-375 (468)
240 KOG2610 Uncharacterized conser 95.4 0.14 3.1E-06 48.0 9.8 159 423-586 115-283 (491)
241 PF07719 TPR_2: Tetratricopept 95.4 0.037 8.1E-07 32.9 4.2 33 517-549 2-34 (34)
242 PRK15331 chaperone protein Sic 95.3 0.13 2.7E-06 43.6 8.5 86 455-544 46-133 (165)
243 PF12921 ATP13: Mitochondrial 95.3 0.24 5.2E-06 40.4 9.9 47 443-491 49-95 (126)
244 PF00515 TPR_1: Tetratricopept 95.3 0.029 6.2E-07 33.5 3.5 32 517-548 2-33 (34)
245 PF12921 ATP13: Mitochondrial 95.3 0.17 3.7E-06 41.3 8.9 50 480-529 48-101 (126)
246 KOG1920 IkappaB kinase complex 95.3 1.6 3.5E-05 48.4 18.4 24 488-511 1003-1026(1265)
247 PF10300 DUF3808: Protein of u 95.2 1 2.2E-05 46.7 16.5 114 425-542 247-373 (468)
248 KOG4234 TPR repeat-containing 95.1 0.058 1.3E-06 46.5 6.0 90 492-581 103-199 (271)
249 KOG3941 Intermediate in Toll s 95.1 0.27 5.8E-06 45.1 10.4 126 6-169 53-187 (406)
250 PF03704 BTAD: Bacterial trans 95.1 0.25 5.5E-06 41.9 10.1 72 413-487 64-139 (146)
251 KOG2610 Uncharacterized conser 95.0 0.65 1.4E-05 43.8 12.7 155 391-550 114-283 (491)
252 PF04184 ST7: ST7 protein; In 94.8 1.9 4E-05 43.4 15.9 99 450-550 263-380 (539)
253 KOG1585 Protein required for f 94.7 2.8 6E-05 37.9 15.3 199 348-573 34-250 (308)
254 PF13428 TPR_14: Tetratricopep 94.5 0.067 1.5E-06 34.3 3.8 30 550-579 1-30 (44)
255 PF04097 Nic96: Nup93/Nic96; 94.3 8.4 0.00018 41.6 21.4 71 105-177 111-188 (613)
256 COG1729 Uncharacterized protei 94.3 0.42 9.2E-06 44.0 9.8 92 414-510 145-241 (262)
257 PF04184 ST7: ST7 protein; In 94.3 0.74 1.6E-05 46.1 12.0 148 424-585 181-330 (539)
258 smart00299 CLH Clathrin heavy 94.3 2.5 5.4E-05 35.4 14.2 113 107-234 8-121 (140)
259 PF13281 DUF4071: Domain of un 94.2 4.1 8.8E-05 40.2 16.8 74 181-254 146-227 (374)
260 KOG1585 Protein required for f 94.0 2.8 6.1E-05 37.9 13.8 23 212-234 94-116 (308)
261 COG4105 ComL DNA uptake lipopr 94.0 4.9 0.00011 36.9 17.2 168 391-579 45-233 (254)
262 COG5107 RNA14 Pre-mRNA 3'-end 93.9 7.3 0.00016 38.7 30.0 446 40-527 30-546 (660)
263 PF04053 Coatomer_WDAD: Coatom 93.9 0.79 1.7E-05 46.7 11.9 45 494-541 328-372 (443)
264 smart00299 CLH Clathrin heavy 93.9 2.8 6.1E-05 35.1 13.7 86 144-235 10-95 (140)
265 KOG3941 Intermediate in Toll s 93.9 0.6 1.3E-05 42.9 9.7 110 399-511 53-186 (406)
266 COG4785 NlpI Lipoprotein NlpI, 93.8 2.9 6.2E-05 37.1 13.2 160 412-580 100-267 (297)
267 PF09613 HrpB1_HrpK: Bacterial 93.7 2.3 4.9E-05 36.0 12.3 96 455-556 19-116 (160)
268 PF13512 TPR_18: Tetratricopep 93.6 1.6 3.5E-05 36.1 11.1 113 418-549 17-132 (142)
269 KOG4648 Uncharacterized conser 93.5 0.11 2.5E-06 48.7 4.7 113 453-574 104-219 (536)
270 COG4105 ComL DNA uptake lipopr 93.4 6.3 0.00014 36.2 16.0 137 417-579 40-196 (254)
271 PF13176 TPR_7: Tetratricopept 93.4 0.12 2.7E-06 31.3 3.3 26 552-577 1-26 (36)
272 KOG4555 TPR repeat-containing 93.4 0.21 4.6E-06 39.9 5.3 56 524-579 51-106 (175)
273 PF04053 Coatomer_WDAD: Coatom 93.3 1.8 3.9E-05 44.2 13.3 156 115-304 270-427 (443)
274 PF13181 TPR_8: Tetratricopept 92.9 0.16 3.5E-06 30.2 3.3 31 518-548 3-33 (34)
275 PF09613 HrpB1_HrpK: Bacterial 92.5 0.69 1.5E-05 39.1 7.4 70 496-565 22-93 (160)
276 TIGR02561 HrpB1_HrpK type III 92.3 0.79 1.7E-05 38.0 7.4 52 529-580 23-74 (153)
277 KOG1941 Acetylcholine receptor 92.0 5.1 0.00011 38.5 13.2 126 417-544 128-274 (518)
278 KOG2114 Vacuolar assembly/sort 92.0 6.5 0.00014 42.3 15.2 27 483-509 430-456 (933)
279 KOG3364 Membrane protein invol 91.8 1.7 3.7E-05 35.3 8.5 26 523-548 78-103 (149)
280 PF02259 FAT: FAT domain; Int 91.8 15 0.00032 36.6 21.3 151 409-563 144-305 (352)
281 PF10602 RPN7: 26S proteasome 91.7 2.6 5.7E-05 37.0 10.7 96 107-204 37-141 (177)
282 PF00637 Clathrin: Region in C 91.7 0.023 5E-07 48.2 -2.2 53 148-200 14-66 (143)
283 PRK09687 putative lyase; Provi 91.6 13 0.00028 35.5 25.6 235 277-526 35-277 (280)
284 KOG1258 mRNA processing protei 91.4 20 0.00043 37.3 26.6 179 278-458 296-487 (577)
285 PF09205 DUF1955: Domain of un 91.3 6.9 0.00015 31.8 11.4 62 314-376 90-151 (161)
286 PF04097 Nic96: Nup93/Nic96; 91.1 19 0.0004 39.0 18.5 86 318-408 266-355 (613)
287 PF13176 TPR_7: Tetratricopept 91.1 0.34 7.4E-06 29.3 3.2 28 518-545 1-28 (36)
288 PF10602 RPN7: 26S proteasome 91.0 4.1 8.8E-05 35.8 11.2 57 382-438 38-100 (177)
289 PF00637 Clathrin: Region in C 90.9 0.043 9.4E-07 46.5 -1.2 87 111-204 12-98 (143)
290 COG3629 DnrI DNA-binding trans 90.8 1.2 2.5E-05 41.9 7.9 76 177-252 154-235 (280)
291 PF13170 DUF4003: Protein of u 90.8 5.2 0.00011 38.4 12.6 63 428-493 160-226 (297)
292 KOG0890 Protein kinase of the 90.7 49 0.0011 40.6 30.5 307 253-580 1392-1732(2382)
293 PF02259 FAT: FAT domain; Int 90.5 10 0.00023 37.7 15.4 65 515-579 145-213 (352)
294 PF07721 TPR_4: Tetratricopept 90.4 0.32 6.9E-06 26.8 2.4 24 551-574 2-25 (26)
295 KOG2066 Vacuolar assembly/sort 90.3 29 0.00063 37.3 24.2 38 496-536 673-710 (846)
296 PF08631 SPO22: Meiosis protei 90.2 18 0.00039 34.6 25.0 98 347-446 86-192 (278)
297 PF10345 Cohesin_load: Cohesin 90.0 32 0.00069 37.3 28.5 166 105-271 58-252 (608)
298 PRK15180 Vi polysaccharide bio 90.0 2.7 5.9E-05 41.8 9.8 125 423-553 301-428 (831)
299 PRK11619 lytic murein transgly 89.8 33 0.00072 37.2 30.4 115 425-544 255-374 (644)
300 KOG1464 COP9 signalosome, subu 89.8 16 0.00035 33.6 17.6 241 293-539 41-326 (440)
301 KOG1586 Protein required for f 89.7 12 0.00025 33.9 12.5 92 460-552 128-231 (288)
302 PF08631 SPO22: Meiosis protei 89.6 20 0.00043 34.3 23.9 99 144-243 87-191 (278)
303 KOG4570 Uncharacterized conser 89.5 4 8.8E-05 38.4 10.0 98 374-475 58-164 (418)
304 PF07719 TPR_2: Tetratricopept 89.4 0.39 8.6E-06 28.3 2.5 29 551-579 2-30 (34)
305 COG2976 Uncharacterized protei 89.2 15 0.00032 32.3 13.0 127 414-548 57-191 (207)
306 KOG2114 Vacuolar assembly/sort 89.0 38 0.00083 36.8 26.8 48 492-540 713-760 (933)
307 PRK10941 hypothetical protein; 89.0 2.3 5.1E-05 40.0 8.4 61 519-579 184-244 (269)
308 COG3629 DnrI DNA-binding trans 88.9 1.7 3.7E-05 40.8 7.4 61 518-578 155-215 (280)
309 COG4649 Uncharacterized protei 88.8 8.9 0.00019 32.8 10.6 24 416-439 172-195 (221)
310 COG3118 Thioredoxin domain-con 88.7 22 0.00047 33.6 18.0 116 354-473 143-263 (304)
311 PF14853 Fis1_TPR_C: Fis1 C-te 88.7 1.8 3.9E-05 28.9 5.4 50 553-628 4-53 (53)
312 PF13170 DUF4003: Protein of u 88.7 5.8 0.00013 38.1 11.1 26 123-148 79-104 (297)
313 KOG4648 Uncharacterized conser 88.7 1 2.2E-05 42.6 5.7 87 418-517 104-199 (536)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 88.6 3.6 7.9E-05 31.2 7.4 63 426-492 22-84 (103)
315 KOG0376 Serine-threonine phosp 88.4 1.2 2.6E-05 44.5 6.3 88 491-578 11-100 (476)
316 KOG1308 Hsp70-interacting prot 88.2 0.27 5.7E-06 46.5 1.7 91 496-586 126-218 (377)
317 PF02284 COX5A: Cytochrome c o 88.1 3 6.4E-05 32.0 6.8 60 429-492 28-87 (108)
318 COG3947 Response regulator con 87.8 24 0.00052 33.1 14.8 61 518-578 281-341 (361)
319 PF07035 Mic1: Colon cancer-as 87.8 17 0.00037 31.3 15.4 56 282-337 92-147 (167)
320 KOG0686 COP9 signalosome, subu 87.4 32 0.00069 34.0 15.3 163 381-579 151-333 (466)
321 PF14853 Fis1_TPR_C: Fis1 C-te 87.3 0.95 2.1E-05 30.2 3.4 31 521-551 6-36 (53)
322 KOG4234 TPR repeat-containing 87.0 7.4 0.00016 34.1 9.3 61 492-552 142-204 (271)
323 PRK09687 putative lyase; Provi 86.8 30 0.00065 33.1 26.6 131 315-457 147-278 (280)
324 COG4649 Uncharacterized protei 86.8 19 0.00042 30.9 15.3 121 421-544 68-195 (221)
325 PF13374 TPR_10: Tetratricopep 86.6 1 2.2E-05 28.1 3.3 28 551-578 3-30 (42)
326 KOG4570 Uncharacterized conser 86.5 5.7 0.00012 37.5 9.0 102 171-274 59-165 (418)
327 PF06552 TOM20_plant: Plant sp 86.5 2.8 6.1E-05 36.1 6.6 31 534-564 53-83 (186)
328 KOG0276 Vesicle coat complex C 86.4 13 0.00027 38.6 12.0 149 391-575 597-746 (794)
329 PF13181 TPR_8: Tetratricopept 86.4 1.1 2.4E-05 26.4 3.2 28 551-578 2-29 (34)
330 PF00515 TPR_1: Tetratricopept 86.2 2.2 4.7E-05 25.1 4.4 28 413-440 3-30 (34)
331 PF13431 TPR_17: Tetratricopep 85.7 1.2 2.6E-05 26.5 3.0 21 484-504 13-33 (34)
332 PF13174 TPR_6: Tetratricopept 85.5 1.4 2.9E-05 25.7 3.3 26 523-548 7-32 (33)
333 smart00028 TPR Tetratricopepti 85.5 1.9 4E-05 24.3 4.0 29 519-547 4-32 (34)
334 PF13174 TPR_6: Tetratricopept 85.3 0.86 1.9E-05 26.5 2.3 28 552-579 2-29 (33)
335 KOG4642 Chaperone-dependent E3 85.2 2.3 4.9E-05 38.4 5.6 79 498-576 24-104 (284)
336 PRK15180 Vi polysaccharide bio 85.1 7.7 0.00017 38.8 9.7 132 387-525 296-434 (831)
337 PF07035 Mic1: Colon cancer-as 84.5 26 0.00056 30.3 14.4 23 212-234 92-114 (167)
338 PRK13800 putative oxidoreducta 84.3 84 0.0018 36.0 23.8 182 378-576 696-878 (897)
339 PF11207 DUF2989: Protein of u 83.8 5.5 0.00012 35.2 7.4 75 495-570 118-198 (203)
340 TIGR02508 type_III_yscG type I 83.7 18 0.00039 27.8 9.8 88 360-451 20-107 (115)
341 TIGR02561 HrpB1_HrpK type III 83.3 26 0.00056 29.4 11.3 66 459-528 23-89 (153)
342 KOG0551 Hsp90 co-chaperone CNS 82.0 4.6 0.0001 38.4 6.6 90 487-576 84-179 (390)
343 KOG0276 Vesicle coat complex C 82.0 15 0.00033 38.0 10.5 123 292-440 599-721 (794)
344 PF11207 DUF2989: Protein of u 81.9 11 0.00024 33.4 8.4 75 428-503 123-197 (203)
345 KOG0545 Aryl-hydrocarbon recep 81.6 6.9 0.00015 35.5 7.2 89 491-579 185-293 (329)
346 KOG1920 IkappaB kinase complex 81.3 1.1E+02 0.0023 35.1 23.4 173 317-511 858-1053(1265)
347 KOG1586 Protein required for f 80.8 44 0.00095 30.4 11.7 53 527-579 165-224 (288)
348 PF13374 TPR_10: Tetratricopep 80.7 4.1 9E-05 25.1 4.3 28 412-439 3-30 (42)
349 KOG0403 Neoplastic transformat 80.5 67 0.0014 32.3 17.2 26 109-134 217-242 (645)
350 KOG1550 Extracellular protein 79.2 95 0.0021 33.2 19.7 112 260-375 228-358 (552)
351 TIGR02508 type_III_yscG type I 78.5 28 0.00061 26.8 9.0 61 286-349 46-106 (115)
352 PF14561 TPR_20: Tetratricopep 78.5 4.2 9.1E-05 30.9 4.4 40 539-578 11-50 (90)
353 PF09986 DUF2225: Uncharacteri 78.3 8.9 0.00019 34.8 7.2 63 517-579 119-194 (214)
354 KOG1498 26S proteasome regulat 78.3 74 0.0016 31.4 13.7 128 488-618 135-277 (439)
355 KOG1464 COP9 signalosome, subu 77.9 27 0.00058 32.3 9.8 202 375-576 21-258 (440)
356 COG4785 NlpI Lipoprotein NlpI, 77.5 54 0.0012 29.5 15.4 61 279-339 99-162 (297)
357 COG4455 ImpE Protein of avirul 77.3 9.4 0.0002 34.1 6.6 64 487-550 4-69 (273)
358 COG1747 Uncharacterized N-term 77.2 93 0.002 32.0 21.1 92 379-473 65-158 (711)
359 PF13929 mRNA_stabil: mRNA sta 76.8 69 0.0015 30.4 13.1 124 109-239 134-264 (292)
360 TIGR03504 FimV_Cterm FimV C-te 75.8 5.3 0.00012 25.4 3.5 27 554-580 3-29 (44)
361 cd00923 Cyt_c_Oxidase_Va Cytoc 75.7 22 0.00049 27.1 7.2 60 123-183 24-83 (103)
362 smart00028 TPR Tetratricopepti 74.8 4.8 0.0001 22.4 3.2 28 551-578 2-29 (34)
363 COG1747 Uncharacterized N-term 74.4 1.1E+02 0.0024 31.5 21.6 88 313-405 69-156 (711)
364 PF09477 Type_III_YscG: Bacter 74.4 40 0.00086 26.4 9.1 87 360-450 21-107 (116)
365 KOG4077 Cytochrome c oxidase, 72.8 23 0.0005 28.5 7.0 60 429-492 67-126 (149)
366 PHA02875 ankyrin repeat protei 72.7 1.2E+02 0.0025 31.1 16.6 150 183-345 72-230 (413)
367 PF02284 COX5A: Cytochrome c o 72.3 28 0.0006 27.0 7.1 59 124-183 28-86 (108)
368 COG2976 Uncharacterized protei 72.3 70 0.0015 28.3 13.9 86 355-440 99-188 (207)
369 KOG2063 Vacuolar assembly/sort 72.2 1.4E+02 0.0029 33.6 15.1 27 21-47 506-532 (877)
370 PF04910 Tcf25: Transcriptiona 71.9 1.1E+02 0.0024 30.5 17.3 50 455-509 112-164 (360)
371 PF08424 NRDE-2: NRDE-2, neces 71.2 86 0.0019 30.7 12.6 115 501-630 48-171 (321)
372 PF12862 Apc5: Anaphase-promot 70.9 13 0.00028 28.5 5.5 53 526-578 8-69 (94)
373 PF06552 TOM20_plant: Plant sp 70.5 18 0.00039 31.4 6.5 32 462-498 51-83 (186)
374 PF13929 mRNA_stabil: mRNA sta 70.0 1E+02 0.0022 29.3 14.4 54 377-430 199-257 (292)
375 PF09670 Cas_Cas02710: CRISPR- 69.8 69 0.0015 32.3 11.7 53 421-474 141-197 (379)
376 KOG2422 Uncharacterized conser 69.1 55 0.0012 34.1 10.5 134 456-589 248-418 (665)
377 KOG2396 HAT (Half-A-TPR) repea 69.1 1.4E+02 0.0031 30.6 28.0 409 105-544 104-558 (568)
378 PRK10941 hypothetical protein; 69.1 28 0.00061 32.9 8.3 66 488-553 185-252 (269)
379 KOG4507 Uncharacterized conser 69.1 17 0.00037 37.6 7.0 100 458-560 619-720 (886)
380 PF11768 DUF3312: Protein of u 69.0 93 0.002 32.4 12.2 127 384-536 412-543 (545)
381 smart00386 HAT HAT (Half-A-TPR 66.9 8 0.00017 22.0 2.9 29 530-558 1-29 (33)
382 PF10579 Rapsyn_N: Rapsyn N-te 66.9 15 0.00032 26.8 4.5 14 460-473 20-33 (80)
383 KOG1550 Extracellular protein 66.2 1.9E+02 0.0041 31.0 21.8 114 225-341 228-359 (552)
384 PF14561 TPR_20: Tetratricopep 65.7 57 0.0012 24.8 8.0 63 514-576 20-85 (90)
385 COG3947 Response regulator con 65.7 1.2E+02 0.0027 28.7 12.1 69 214-283 284-357 (361)
386 PF04190 DUF410: Protein of un 64.5 1.3E+02 0.0028 28.4 14.0 29 277-305 88-116 (260)
387 PRK13342 recombination factor 63.7 1.8E+02 0.0039 29.8 14.9 99 241-357 173-277 (413)
388 KOG3807 Predicted membrane pro 63.6 74 0.0016 30.5 9.5 54 416-471 280-336 (556)
389 PHA02875 ankyrin repeat protei 63.2 1.7E+02 0.0036 29.9 13.6 119 113-244 72-196 (413)
390 COG4976 Predicted methyltransf 62.5 16 0.00035 33.0 4.9 57 493-549 4-62 (287)
391 PF04910 Tcf25: Transcriptiona 62.0 1.8E+02 0.0038 29.1 13.8 64 515-578 99-167 (360)
392 TIGR03504 FimV_Cterm FimV C-te 61.2 17 0.00038 23.1 3.6 24 417-440 5-28 (44)
393 PF10579 Rapsyn_N: Rapsyn N-te 61.1 20 0.00043 26.2 4.3 46 423-468 18-65 (80)
394 PF13762 MNE1: Mitochondrial s 60.8 77 0.0017 26.6 8.3 82 108-189 41-128 (145)
395 KOG4279 Serine/threonine prote 60.6 1.1E+02 0.0024 33.0 11.1 181 312-548 203-398 (1226)
396 PRK11619 lytic murein transgly 60.5 2.6E+02 0.0056 30.6 38.6 229 323-571 254-497 (644)
397 PF07720 TPR_3: Tetratricopept 59.8 27 0.00059 21.1 4.1 29 519-547 4-34 (36)
398 KOG3364 Membrane protein invol 59.3 49 0.0011 27.2 6.6 64 444-509 30-96 (149)
399 COG4455 ImpE Protein of avirul 58.8 1.4E+02 0.0031 27.0 11.9 128 413-550 3-139 (273)
400 COG5159 RPN6 26S proteasome re 58.6 93 0.002 29.3 9.1 135 112-246 9-166 (421)
401 PF11846 DUF3366: Domain of un 58.2 35 0.00076 30.4 6.7 36 512-547 140-175 (193)
402 PRK12798 chemotaxis protein; R 58.1 2.1E+02 0.0046 28.8 26.4 180 393-577 125-322 (421)
403 PF10366 Vps39_1: Vacuolar sor 57.6 94 0.002 24.6 8.1 27 413-439 41-67 (108)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 57.0 52 0.0011 26.9 6.8 42 534-575 81-124 (126)
405 PF08424 NRDE-2: NRDE-2, neces 56.8 2E+02 0.0044 28.2 14.6 114 427-546 47-184 (321)
406 COG4941 Predicted RNA polymera 56.2 2E+02 0.0042 28.0 10.9 126 409-549 262-398 (415)
407 PF13762 MNE1: Mitochondrial s 55.4 1.3E+02 0.0027 25.4 10.3 52 207-258 77-129 (145)
408 COG2912 Uncharacterized conser 54.9 68 0.0015 30.1 7.8 59 521-579 186-244 (269)
409 PF07163 Pex26: Pex26 protein; 54.4 1.3E+02 0.0028 28.4 9.3 87 418-509 90-183 (309)
410 PF04190 DUF410: Protein of un 54.2 2E+02 0.0042 27.2 18.0 159 291-475 2-170 (260)
411 COG5159 RPN6 26S proteasome re 53.8 2E+02 0.0043 27.2 11.9 153 318-470 11-189 (421)
412 PF11848 DUF3368: Domain of un 53.4 33 0.00072 22.3 4.1 38 26-63 9-46 (48)
413 PF10366 Vps39_1: Vacuolar sor 53.4 81 0.0017 25.0 7.1 27 312-338 41-67 (108)
414 cd00280 TRFH Telomeric Repeat 53.2 91 0.002 27.3 7.6 28 522-550 117-144 (200)
415 COG2909 MalT ATP-dependent tra 52.5 3.8E+02 0.0082 30.0 23.8 87 188-274 427-527 (894)
416 KOG3824 Huntingtin interacting 51.9 20 0.00043 33.8 3.9 59 496-554 128-188 (472)
417 PF09477 Type_III_YscG: Bacter 51.4 1.2E+02 0.0026 23.9 8.8 86 259-348 21-106 (116)
418 PF10345 Cohesin_load: Cohesin 50.6 3.7E+02 0.0079 29.3 32.0 85 119-203 152-252 (608)
419 COG4976 Predicted methyltransf 50.5 32 0.00069 31.2 4.7 56 526-581 5-60 (287)
420 PF07575 Nucleopor_Nup85: Nup8 50.1 2.2E+02 0.0047 30.7 12.0 93 105-201 371-463 (566)
421 KOG0292 Vesicle coat complex C 50.0 23 0.00051 38.5 4.5 95 424-544 606-700 (1202)
422 PF13934 ELYS: Nuclear pore co 49.7 1.3E+02 0.0028 27.7 8.9 125 437-572 70-198 (226)
423 PF11663 Toxin_YhaV: Toxin wit 49.6 23 0.00049 29.0 3.4 33 30-64 106-138 (140)
424 cd08819 CARD_MDA5_2 Caspase ac 49.4 1.1E+02 0.0024 23.0 7.0 38 392-430 48-85 (88)
425 PF10255 Paf67: RNA polymerase 49.0 82 0.0018 31.8 7.9 55 522-576 128-190 (404)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 48.9 1.5E+02 0.0032 24.3 8.9 43 429-471 81-124 (126)
427 PF11848 DUF3368: Domain of un 48.7 65 0.0014 20.9 4.9 33 117-149 13-45 (48)
428 KOG3824 Huntingtin interacting 48.7 27 0.00058 33.0 4.2 49 526-574 126-174 (472)
429 PF11663 Toxin_YhaV: Toxin wit 47.9 22 0.00049 29.0 3.1 34 116-151 105-138 (140)
430 PRK13800 putative oxidoreducta 47.9 4.9E+02 0.011 30.0 26.5 254 197-474 625-880 (897)
431 KOG4521 Nuclear pore complex, 47.9 5.1E+02 0.011 30.1 14.6 22 386-407 926-947 (1480)
432 PF12968 DUF3856: Domain of Un 47.5 73 0.0016 25.6 5.7 58 519-576 58-126 (144)
433 PF14863 Alkyl_sulf_dimr: Alky 47.5 59 0.0013 27.2 5.7 65 501-568 58-122 (141)
434 PRK10564 maltose regulon perip 46.9 35 0.00075 32.5 4.7 40 108-147 259-298 (303)
435 COG5191 Uncharacterized conser 46.4 33 0.00071 32.6 4.3 77 482-558 105-184 (435)
436 PF07163 Pex26: Pex26 protein; 46.3 1.1E+02 0.0024 28.8 7.7 54 381-434 119-181 (309)
437 KOG0890 Protein kinase of the 46.0 7.4E+02 0.016 31.5 28.6 365 147-557 1389-1796(2382)
438 KOG2471 TPR repeat-containing 45.5 3.6E+02 0.0079 27.8 14.9 105 421-528 250-381 (696)
439 PF11846 DUF3366: Domain of un 45.2 73 0.0016 28.4 6.6 32 480-511 140-171 (193)
440 PRK10564 maltose regulon perip 45.1 40 0.00086 32.1 4.8 42 412-453 258-299 (303)
441 KOG4507 Uncharacterized conser 44.6 1.1E+02 0.0024 32.0 8.1 133 443-580 568-706 (886)
442 PF14669 Asp_Glu_race_2: Putat 44.5 2.3E+02 0.0049 25.2 13.7 90 306-405 103-206 (233)
443 PF14689 SPOB_a: Sensor_kinase 43.8 30 0.00066 24.0 3.0 23 416-438 28-50 (62)
444 PF11838 ERAP1_C: ERAP1-like C 42.6 3.3E+02 0.0071 26.5 18.9 29 89-117 54-84 (324)
445 KOG0376 Serine-threonine phosp 42.4 56 0.0012 33.2 5.6 101 421-528 14-117 (476)
446 KOG1308 Hsp70-interacting prot 42.2 52 0.0011 31.9 5.1 115 458-577 126-242 (377)
447 KOG4567 GTPase-activating prot 41.4 2.6E+02 0.0056 26.9 9.2 41 128-168 265-305 (370)
448 PF00244 14-3-3: 14-3-3 protei 41.1 3E+02 0.0065 25.5 11.3 162 417-581 7-200 (236)
449 TIGR02328 conserved hypothetic 41.0 29 0.00063 27.1 2.7 26 610-635 48-73 (120)
450 cd08326 CARD_CASP9 Caspase act 40.3 69 0.0015 23.9 4.6 37 89-125 44-80 (84)
451 PF12862 Apc5: Anaphase-promot 39.5 1.5E+02 0.0033 22.5 6.7 16 494-509 51-66 (94)
452 PF07575 Nucleopor_Nup85: Nup8 39.4 1.6E+02 0.0035 31.7 9.0 23 21-44 151-173 (566)
453 PF12069 DUF3549: Protein of u 38.4 4E+02 0.0086 26.2 13.0 96 284-382 171-267 (340)
454 KOG0686 COP9 signalosome, subu 37.5 4.5E+02 0.0096 26.5 14.2 58 280-337 151-214 (466)
455 KOG0545 Aryl-hydrocarbon recep 37.3 2.4E+02 0.0053 26.1 8.1 62 488-549 234-297 (329)
456 cd08819 CARD_MDA5_2 Caspase ac 37.2 1.8E+02 0.0039 21.9 6.8 38 291-329 48-85 (88)
457 PF10516 SHNi-TPR: SHNi-TPR; 37.0 67 0.0014 19.7 3.3 27 551-577 2-28 (38)
458 KOG2062 26S proteasome regulat 36.8 6.1E+02 0.013 27.9 30.9 86 421-511 511-598 (929)
459 KOG1524 WD40 repeat-containing 36.1 1.8E+02 0.0039 30.1 7.9 89 483-574 572-668 (737)
460 COG5108 RPO41 Mitochondrial DN 35.6 1.8E+02 0.0038 31.2 7.9 48 416-463 33-82 (1117)
461 smart00777 Mad3_BUB1_I Mad3/BU 35.5 2.3E+02 0.0049 23.2 7.2 68 501-574 50-123 (125)
462 PF06957 COPI_C: Coatomer (COP 35.3 1.8E+02 0.0039 29.6 7.9 31 518-548 302-332 (422)
463 PF11817 Foie-gras_1: Foie gra 35.2 1.2E+02 0.0026 28.4 6.5 22 489-510 183-204 (247)
464 PF04781 DUF627: Protein of un 34.5 1.1E+02 0.0023 24.4 4.9 40 535-574 63-102 (111)
465 PF14689 SPOB_a: Sensor_kinase 34.4 84 0.0018 21.8 4.0 45 428-474 7-51 (62)
466 PF02184 HAT: HAT (Half-A-TPR) 34.1 77 0.0017 18.6 3.1 26 531-557 2-27 (32)
467 KOG0403 Neoplastic transformat 33.5 5.4E+02 0.012 26.3 19.3 58 487-544 512-571 (645)
468 KOG4567 GTPase-activating prot 33.4 4.5E+02 0.0098 25.4 9.5 41 265-305 264-304 (370)
469 COG0735 Fur Fe2+/Zn2+ uptake r 33.2 98 0.0021 26.1 5.0 64 4-68 6-69 (145)
470 KOG4642 Chaperone-dependent E3 33.1 4E+02 0.0087 24.7 9.3 81 390-472 20-104 (284)
471 KOG4279 Serine/threonine prote 32.9 1.1E+02 0.0023 33.2 6.0 68 413-484 203-280 (1226)
472 PF02847 MA3: MA3 domain; Int 32.9 1.2E+02 0.0026 24.0 5.4 19 317-335 9-27 (113)
473 smart00544 MA3 Domain in DAP-5 32.8 2.5E+02 0.0053 22.2 8.6 22 316-337 8-29 (113)
474 KOG4077 Cytochrome c oxidase, 32.8 1.9E+02 0.0041 23.6 6.0 40 509-548 77-116 (149)
475 KOG0889 Histone acetyltransfer 32.6 1.4E+03 0.03 30.8 21.3 27 485-511 2813-2839(3550)
476 PF09986 DUF2225: Uncharacteri 32.4 3.9E+02 0.0084 24.3 9.7 23 489-511 170-192 (214)
477 cd08326 CARD_CASP9 Caspase act 32.4 2.1E+02 0.0046 21.4 6.1 39 392-430 42-80 (84)
478 KOG3636 Uncharacterized conser 32.3 5.5E+02 0.012 26.1 13.5 85 135-220 177-271 (669)
479 PF11838 ERAP1_C: ERAP1-like C 31.8 4.9E+02 0.011 25.3 18.6 85 461-545 145-230 (324)
480 COG2178 Predicted RNA-binding 31.8 1.8E+02 0.0038 25.8 6.2 56 183-238 36-98 (204)
481 PF11768 DUF3312: Protein of u 31.6 2.2E+02 0.0049 29.8 8.0 57 282-338 411-472 (545)
482 cd08332 CARD_CASP2 Caspase act 31.5 1.3E+02 0.0028 22.9 4.9 33 89-121 48-80 (90)
483 COG0735 Fur Fe2+/Zn2+ uptake r 31.4 2.3E+02 0.005 23.9 7.0 48 415-462 24-71 (145)
484 cd02679 MIT_spastin MIT: domai 31.3 30 0.00065 25.5 1.4 41 529-578 21-67 (79)
485 PF12968 DUF3856: Domain of Un 31.3 2.8E+02 0.0062 22.4 8.2 20 525-544 109-128 (144)
486 KOG3783 Uncharacterized conser 30.8 6.5E+02 0.014 26.4 21.7 200 377-579 264-520 (546)
487 PF15469 Sec5: Exocyst complex 30.7 3.7E+02 0.008 23.6 10.6 27 451-477 91-117 (182)
488 COG5108 RPO41 Mitochondrial DN 30.6 2.4E+02 0.0052 30.2 8.0 47 146-192 33-81 (1117)
489 PRK11639 zinc uptake transcrip 30.6 1.2E+02 0.0026 26.4 5.3 63 6-69 13-75 (169)
490 PF04034 DUF367: Domain of unk 30.4 3E+02 0.0066 22.5 7.3 58 485-542 67-125 (127)
491 cd00280 TRFH Telomeric Repeat 30.4 3.3E+02 0.0071 24.0 7.5 32 492-523 119-150 (200)
492 PHA02537 M terminase endonucle 30.3 4.4E+02 0.0095 24.3 11.5 23 421-443 93-115 (230)
493 PRK11639 zinc uptake transcrip 30.2 1.9E+02 0.004 25.2 6.4 35 157-191 41-75 (169)
494 PF15015 NYD-SP12_N: Spermatog 29.9 94 0.002 31.1 4.8 20 490-509 234-253 (569)
495 KOG3636 Uncharacterized conser 29.8 4.6E+02 0.01 26.6 9.3 85 438-526 175-270 (669)
496 TIGR02270 conserved hypothetic 28.8 6.5E+02 0.014 25.8 25.4 19 621-639 345-363 (410)
497 PF09454 Vps23_core: Vps23 cor 28.2 1.1E+02 0.0025 21.5 3.8 50 103-153 5-54 (65)
498 KOG0991 Replication factor C, 27.1 5.1E+02 0.011 24.0 11.5 56 400-457 228-283 (333)
499 PF04090 RNA_pol_I_TF: RNA pol 26.9 3.3E+02 0.0071 24.4 7.3 90 517-606 42-132 (199)
500 PRK13342 recombination factor 26.7 7E+02 0.015 25.5 16.8 42 212-253 230-274 (413)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-107 Score=905.15 Aligned_cols=627 Identities=32% Similarity=0.546 Sum_probs=618.2
Q ss_pred cCchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhh
Q 048321 3 VSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK 82 (641)
Q Consensus 3 ~~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~ 82 (641)
++.|+++|++|+.|+++ +||++|.+|++.|++++|+++|++|++.|+.||..||++++++|++.+++..++++|.++++
T Consensus 137 ~~~A~~~f~~m~~~d~~-~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 137 LVHAWYVFGKMPERDLF-SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred hHHHHHHHhcCCCCCee-EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 46799999999999999 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC--------------cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 83 SPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLT 148 (641)
Q Consensus 83 ~~~--------------~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll 148 (641)
.|+ +++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 876 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDS 228 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 228 (641)
.+|+..|+++.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|.. ||..+||.+|.+|++.|++++|
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 048321 229 LNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDR 308 (641)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 308 (641)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALID 388 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 388 (641)
|+++||++|.+|+++|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|++
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 999999999999999999999999999986 6999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048321 389 MYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
+|+++|++++|.++|+.+ .+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++
T Consensus 533 ~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|+.|.+.+| +.|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+
T Consensus 612 f~~M~~~~g--i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 612 FHSMEEKYS--ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHhC--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 999998899 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccc
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAY 628 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 628 (641)
++..|+.++++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|++||.+||+.++||.+|+.|..+|++.||
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~ 769 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 048321 629 SSHLKWIP 636 (641)
Q Consensus 629 ~~~~~~~~ 636 (641)
+||+++++
T Consensus 770 ~~~~~~~~ 777 (857)
T PLN03077 770 AGSESSSM 777 (857)
T ss_pred CCCcchhc
Confidence 99999876
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-90 Score=748.57 Aligned_cols=532 Identities=30% Similarity=0.486 Sum_probs=523.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVG-IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 181 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (641)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4477899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 182 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
|+++|+++|+++.|.++|++|++ ||.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 048321 262 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 341 (641)
.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 048321 342 LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGC 421 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 421 (641)
.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++|.++|+.|.+.+| +.|+..+|++|+++|++.|+++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--IKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999998889 9999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 502 EALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 502 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|..++++|++.|+|++|.+++++|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccccCCCCCcccc
Q 048321 582 KKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHLKWIPEH 638 (641)
Q Consensus 582 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~~ 638 (641)
+|.||+||+++++++|.|.+||.+||+..+||.+|+++..+|++.||+||+++++.+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~ 616 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPD 616 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcc
Confidence 999999999999999999999999999999999999999999999999999998643
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-82 Score=700.80 Aligned_cols=607 Identities=29% Similarity=0.424 Sum_probs=545.1
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC----------
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF---------- 85 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~---------- 85 (641)
++.. ++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..+..+|..+++.+.
T Consensus 49 ~~~~-~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTH-DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3455 79999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ----cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 048321 86 ----VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 86 ----~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 161 (641)
+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCC
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR 241 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (641)
+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|+. +|.++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 048321 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYA 321 (641)
Q Consensus 242 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 321 (641)
||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|.++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCC-
Q 048321 402 LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISY- 480 (641)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~- 480 (641)
+|++|.++|+++||+||.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+. +.| +
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g--~~ 521 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTG--IG 521 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhC--CC
Confidence 99999999999999999999999999999999999986 589999999999999999998888888888777 344 4
Q ss_pred -----------------------------CCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChhHHHHHHHHHHH
Q 048321 481 -----------------------------NPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 481 -----------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~ 528 (641)
.||..+|++||.+|++.|+.++|+++|++|. ..||..+|++++.+|.+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 4566777777777777778888888888776 67888888888888888
Q ss_pred cCCHHHHHHHHHHhHc---cCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEE--EEEe-eC
Q 048321 529 HLNIEIGEYVAYCLFK---LEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKT--CTFT-AE 602 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~--~~~~-~~ 602 (641)
.|++++|.++|+.+.+ +.|+ ..+|.+++++|++.|+++||.+++++|. +++++ ..|-.+-+.+ |.-. .+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~-~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP-AVWGALLNACRIHRHVELG 676 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH-HHHHHHHHHHHHcCChHHH
Confidence 8888888888887763 4554 6788888888888888888888888874 23222 2233322221 1100 00
Q ss_pred C-------CCCCChhcHHHHH-------------HHHHHHHHHccccCCCCC
Q 048321 603 D-------RYHAESELTYPVL-------------DCLALHSREEAYSSHLKW 634 (641)
Q Consensus 603 ~-------~~~~~~~~~~~~l-------------~~l~~~~~~~g~~~~~~~ 634 (641)
. ...|.....|..| .++.+.|++.|.++++-+
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~ 728 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCc
Confidence 0 1346555555444 456789999998887643
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-68 Score=576.79 Aligned_cols=456 Identities=26% Similarity=0.413 Sum_probs=441.3
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC---------
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQND-IEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF--------- 85 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~--------- 85 (641)
++.+ +|+.+|.+|.+.|++++|+++|++|...+ +.||..||+.++.+|++.+++..+.++|..+.+.|+
T Consensus 85 ~~~~-~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGV-SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCce-eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3556 89999999999999999999999998764 789999999999999999999999999999998887
Q ss_pred -----cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 048321 86 -----VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL 160 (641)
Q Consensus 86 -----~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 160 (641)
+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 161 KSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.. +|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHH
Q 048321 241 RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGY 320 (641)
Q Consensus 241 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 320 (641)
.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 321 AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 399 (641)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 400 RELFYALPE-KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
.++|++|.. |+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|. ..|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKG 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcC
Confidence 999999975 8999999999999999999999999999975 4665 5699999999999999999999999998 455
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-67 Score=573.30 Aligned_cols=534 Identities=16% Similarity=0.194 Sum_probs=467.8
Q ss_pred cCCCChhHHHHHhhccCCCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 048321 86 VKCDRLDCAYKIFDEMAVRDVA-----SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL 160 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 160 (641)
.++|++++|.++|++|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||+.++.+|++.|+++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHH
Confidence 4567888999999999866554 556677789999999999999999974 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHC
Q 048321 161 KSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|... .||..+|+.||.+|++.|++++|+++|++|...
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999865 689999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcch
Q 048321 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH--YGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC----DRTRVS 312 (641)
Q Consensus 239 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 312 (641)
|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|++++|.++|+.|. .++..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999987 6789999999999999999999999999999994 457789
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048321 393 CGSIGDARELFYALP----EKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
+|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999995 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhh----cc-------------------CChHHHHHHHHhCC---CCCChhHHHHH
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLG----RK-------------------GKLKEALDFVQSMP---IKSDAGIWGTL 522 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~---~~p~~~~~~~l 522 (641)
|..|. +.| +.||..+|+++++++. ++ +..++|+.+|++|. ..||..+|+.+
T Consensus 777 ~~~M~-k~G--i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 777 LSQAK-EDG--IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHH-HcC--CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99998 678 9999999999997643 22 23468999999997 88999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhHc-cCCCCCccHHHHHHHHHhcCCc-hHHHHHHHHHHhCCCccCCce-eEEEECCEEEEE
Q 048321 523 LCACKIHLNIEIGEYVAYCLFK-LEPHSAAPYVEMANKYALGGRW-DGVANIRTMMKRNQVKKFPGQ-SLFHINGKTCTF 599 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~eA~~~~~~m~~~~~~~~~~~-s~~~~~~~~~~~ 599 (641)
+.++.+.+..+.+..+++.+.. -.+.+...|..+++.+ |++ ++|..++++|...|+.+.... .+ ..--.+|.|
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~ 929 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEEL 929 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccC
Confidence 9777788888888888876532 2344577888999877 443 689999999999999866542 11 111122333
Q ss_pred eeCCCCCCChhcHHHHHHHHHHHHHHccccCCCCC
Q 048321 600 TAEDRYHAESELTYPVLDCLALHSREEAYSSHLKW 634 (641)
Q Consensus 600 ~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~ 634 (641)
..| .....+...|..|...+...-..|..-.
T Consensus 930 ~~~----aa~~~l~~wl~~~~~~~~~g~~lp~~~~ 960 (1060)
T PLN03218 930 PVF----AAEVYLLTILKGLKHRLAAGAKLPNVTI 960 (1060)
T ss_pred cch----hHHHHHHHHHHHHHHHHhccCcCCccee
Confidence 322 1122344556666665533225555433
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-67 Score=573.06 Aligned_cols=504 Identities=15% Similarity=0.186 Sum_probs=472.8
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHH
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDI-EPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCA 94 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A 94 (641)
++.. .|..++..|++.|++.+|+++|++|.+.|+ .|+..+++.++.+|. +.|.+++|
T Consensus 368 ~~~~-~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~---------------------~~g~~~eA 425 (1060)
T PLN03218 368 RKSP-EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK---------------------KQRAVKEA 425 (1060)
T ss_pred CCch-HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH---------------------HCCCHHHH
Confidence 4455 899999999999999999999999999995 567778888999984 45778999
Q ss_pred HHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCC
Q 048321 95 YKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 174 (641)
Q Consensus 95 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 174 (641)
.++|+.|+.||..+||.+|.+|++.|+++.|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|+.|
T Consensus 426 l~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 426 FRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH--CCCCCChhhHHHH
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY--NGFRLDVTTVVSL 250 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~l 250 (641)
|..+|+.||++|++.|++++|.++|+.|... .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+.+
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 9999999999999999999999999999765 79999999999999999999999999999986 6899999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCCh
Q 048321 251 LSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDL 326 (641)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 326 (641)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 367999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 048321 327 DEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 406 (641)
Q Consensus 327 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 406 (641)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----c-------------------
Q 048321 407 PE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH----T------------------- 459 (641)
Q Consensus 407 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~------------------- 459 (641)
.. ||..+|++++.+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ .
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 64 89999999999999999999999999999999999999999999876542 1
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
+..+.|..+|++|. ..| +.||..+|+.++.++.+.+..+.+..+++.|. ..|+..+|++|+.+|.+. .++|.
T Consensus 826 ~w~~~Al~lf~eM~-~~G--i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 826 KWTSWALMVYRETI-SAG--TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred chHHHHHHHHHHHH-HCC--CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 12467999999999 678 99999999999999999999999999999986 566788999999998432 46899
Q ss_pred HHHHHhHccC
Q 048321 537 YVAYCLFKLE 546 (641)
Q Consensus 537 ~~~~~~~~~~ 546 (641)
.+++++.+..
T Consensus 901 ~l~~em~~~G 910 (1060)
T PLN03218 901 SLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHcC
Confidence 9999997653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-34 Score=325.11 Aligned_cols=544 Identities=9% Similarity=-0.015 Sum_probs=366.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC-------------cC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF-------------VK 87 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~-------------~~ 87 (641)
.+..+...+.+.|++++|+..++.+.+... .+...+..+...+.+.|+++.|...+..+.+... ..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 455666666677777777777766665432 2344556666666666777766666666554332 44
Q ss_pred CCChhHHHHHhhccCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 048321 88 CDRLDCAYKIFDEMAV---RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 164 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 164 (641)
.|++++|.+.|+.... .+...+..++..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|.+.+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5666777776665532 23345555666677777777777777777654 2445566777777777777777777777
Q ss_pred HHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC
Q 048321 165 SFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD 243 (641)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 243 (641)
..+.+.. +.+...+..+...+...|++++|.+.|+++... +.+..++..+...+.+.|+.++|...++++...+ +.+
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 7776643 234455666667777777777777777776654 4456667777777777777777777777776543 234
Q ss_pred hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHH
Q 048321 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGY 320 (641)
Q Consensus 244 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~ 320 (641)
...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+.+ .+.+...|..+...+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4556666777777777777777777776543 455667777777777777777777777765 233455667777777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048321 321 AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR 400 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 400 (641)
.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777776542 2345566667777777777777777777777655 455666677777777777777777
Q ss_pred HHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 401 ELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 401 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+.+.+..+
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 801 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP- 801 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-
Confidence 77777654 444566667777777777777777777777652 33444666666677777777777777777775433
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 479 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
++...+..++..+.+.|+ ++|+.+++++. ..| ++..+..+...+...|++++|...++++++.+|.++..+..+
T Consensus 802 ---~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 802 ---DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred ---CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 456677777777777777 66777777754 233 455666777777777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 048321 557 ANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+.+|.+.|++++|.+++++|.
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 777777788887777777764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-33 Score=317.20 Aligned_cols=540 Identities=11% Similarity=0.064 Sum_probs=331.5
Q ss_pred HHHHhCCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCchHHhHHHHHHhhccC-------------cCCCChh
Q 048321 27 REAVNKNEAHKTLLLFRQMKQNDIEPNNL-TFPFIAKACAKLSDLIYSQMIHGHIVKSPF-------------VKCDRLD 92 (641)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~ 92 (641)
..+...|++++|+..|+++.+.+ |+.. .+..+-..+...|+++.+...+..+++... .+.|+++
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 34445666666666666665533 2211 222233334455666666655555544322 3455566
Q ss_pred HHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 048321 93 CAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH 169 (641)
Q Consensus 93 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (641)
+|...+..+. +.+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+..+.+
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666655543 2234455555556666666666666666555432 11223344444444445555555555444444
Q ss_pred Hc---------------------------------CCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHH
Q 048321 170 IG---------------------------------VDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSM 215 (641)
Q Consensus 170 ~~---------------------------------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 215 (641)
.. .+++..++..+...|...|++++|.+.|+++... +.+...+..+
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 505 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 32 2234445555555555555555555555555443 3334445555
Q ss_pred HHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048321 216 VAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDI 295 (641)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 295 (641)
...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 555555556666666655555432 1234455555555555666666666666655543 33445555666666666666
Q ss_pred HHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHH
Q 048321 296 DSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYAC 372 (641)
Q Consensus 296 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (641)
++|..+++.+. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666552 2344566666667777777777777777666542 2334455566666666677777777776666
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH
Q 048321 373 SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF 449 (641)
Q Consensus 373 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 449 (641)
+.. +.+...+..++..+...|++++|.++++.+.. .+...+..+...+...|++++|++.|+++... .|+..++
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 739 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNA 739 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHH
Confidence 543 44556666677777777777777777766654 24456666777777777777777777777765 4555666
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK 527 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (641)
..+..++.+.|++++|.+.++.+.+..+ .+...+..++..|.+.|++++|.+.|+++. .++++.++..+...+.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP----NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6777777778888888888777775433 556777778888888888888888888865 4446667888888888
Q ss_pred HcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 528 IHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..|+ .+|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888 778888888888888888888888888888888888888888877653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.4e-24 Score=245.40 Aligned_cols=540 Identities=11% Similarity=0.024 Sum_probs=368.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHH-----------------HHHHHHhccCCchHHhHHHHHHhhc
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFP-----------------FIAKACAKLSDLIYSQMIHGHIVKS 83 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-----------------~ll~~~~~~~~~~~~~~i~~~~~~~ 83 (641)
.+..++..+.+.|+.++|.+.+++..+.. |+...+. .....+...|+++.|...+..+++.
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 78888999999999999999999998854 5544332 2223567789999999888887765
Q ss_pred cC--------------cCCCChhHHHHHhhccCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------
Q 048321 84 PF--------------VKCDRLDCAYKIFDEMAV--R-DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGI--------- 137 (641)
Q Consensus 84 ~~--------------~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--------- 137 (641)
.. ...|+.++|.+.|+++.. | +...+..+...+...|++++|+..|+++.+...
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~ 221 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLW 221 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 32 234888899999988763 3 556788888889999999999999998754320
Q ss_pred ---------CCChh-hHHH----------------------------------HHHHHhccCChhHHHHHHHHHHHHcCC
Q 048321 138 ---------QADFV-TVMG----------------------------------LTQAAIHAKHLSLLKSVHSFGIHIGVD 173 (641)
Q Consensus 138 ---------~p~~~-t~~~----------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (641)
.|+.. .+.. .-..+...|++++|...++.+++.. +
T Consensus 222 ~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P 300 (1157)
T PRK11447 222 YGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-P 300 (1157)
T ss_pred HHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 00000 0110 0122334566666666666666543 2
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCc---hhHHHH------------HHHHhcCCCchHHHHHHHHHHHC
Q 048321 174 ADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTV---VSWNSM------------VAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 174 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
.+...+..|...|.+.|++++|+..|++..+..|+. ..|..+ ...+.+.|++++|...|++..+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 245556666666666666666666666655432221 112111 22345566666666666666654
Q ss_pred CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---------
Q 048321 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT--------- 309 (641)
Q Consensus 239 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 309 (641)
.. .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 21 233444455566666666666666666666553 233444555555553 345566666665553221
Q ss_pred ---cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHH
Q 048321 310 ---RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNA 385 (641)
Q Consensus 310 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (641)
...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|+.++|...++.+.+.. +.+...+..
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a 534 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYA 534 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 112334556677788889999998888775 343 4456667777888899999999998887754 344555555
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 386 LIDMYSKCGSIGDARELFYALPEK----IV---------VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAV 452 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 452 (641)
+...+.+.++.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+++...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 566677888899999988887642 11 1123456678889999999998872 13444567778
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 530 (641)
...+...|++++|...|+.+.+..+ .+...+..++.+|...|++++|++.++... ..| +...+..+..++...|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREP----GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 8899999999999999999996443 457888999999999999999999999877 444 4557778888899999
Q ss_pred CHHHHHHHHHHhHccCCCCCc------cHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 531 NIEIGEYVAYCLFKLEPHSAA------PYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++++|...++++++..|+++. .+..++.++...|++++|.+.++....
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998776543 555679999999999999999888753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.3e-22 Score=231.32 Aligned_cols=537 Identities=12% Similarity=-0.004 Sum_probs=279.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhc--
Q 048321 24 SQIREAVNKNEAHKTLLLFRQMKQNDIEPN-NLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDE-- 100 (641)
Q Consensus 24 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~-- 100 (641)
..++.+...++.+.|.+.++++... .|+ ...+..+...+.+.|+.+.|....+.+.+... +.. .+...-..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P---~~~-~~~~~~~~~~ 106 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP---DSN-AYRSSRTTML 106 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---CCh-HHHHHHHHHH
Confidence 3445677889999999999999874 443 44666667777677777776666666655432 000 01100000
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHH
Q 048321 101 MAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT-VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVC 179 (641)
Q Consensus 101 ~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 179 (641)
...++....-.+...+.+.|++++|+..|+.+.+.+ +|+... ...........++.++|...++.+.+.. +.+...+
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 011222223344445667777777777777776542 233211 1111112224467777777777777653 2245566
Q ss_pred HHHHHHhHcCCChhHHHHHHhcccCCCCC----chh-----------------HHHHHHHHhcCCCchHHHHHHHHHHHC
Q 048321 180 NTWISSYAKCDDLKMAELVFCGIEERLRT----VVS-----------------WNSMVAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 180 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~-----------------~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
..+...+...|+.++|...|+++...++. ... +...+..+-.......|...+.++...
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 66777777777777777777766442110 000 111111111111122333333332222
Q ss_pred CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCc---chH
Q 048321 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD--RTR---VSW 313 (641)
Q Consensus 239 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~ 313 (641)
...|+... ......+...|++++|...++..++.. +.+..++..|..+|.+.|++++|+..|++..+ |+. ..|
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 11111111 111233344555555555555555543 33445555555555555555555555554421 111 111
Q ss_pred HH------------HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchh
Q 048321 314 TA------------MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVM 381 (641)
Q Consensus 314 ~~------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (641)
.. ....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 11 1223445555555555555555442 1223334444455555555555555555555433 22233
Q ss_pred HHHHHHHH------------------------------------------HHhcCCHHHHHHHHhhCCC--C-ChhHHHH
Q 048321 382 VCNALIDM------------------------------------------YSKCGSIGDARELFYALPE--K-IVVSWTT 416 (641)
Q Consensus 382 ~~~~li~~------------------------------------------~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 416 (641)
.+..+... +...|++++|.+.|++..+ | +...+..
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33334443 4444444444444444432 1 2233444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh---------hH
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL---------DH 486 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~---------~~ 486 (641)
+...|.+.|++++|+..++++.+. .|+.. .+..+...+...++.++|...++.+... . ..++. ..
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~--~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-Q--WNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-h--cChhHHHHHHHHhhhH
Confidence 444444445555555555444432 22221 2222222233444444444444443210 0 01111 11
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCc
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRW 566 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (641)
+..+++.+...|++++|+++++.- ++++..+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 223445566777777777777743 345556777888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 048321 567 DGVANIRTMMKRN 579 (641)
Q Consensus 567 ~eA~~~~~~m~~~ 579 (641)
++|.+.++.....
T Consensus 654 ~eA~~~l~~ll~~ 666 (1157)
T PRK11447 654 AAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999877654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.5e-20 Score=204.61 Aligned_cols=529 Identities=9% Similarity=-0.045 Sum_probs=346.6
Q ss_pred CCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC---------cCCCChhHHHHHhhccC
Q 048321 32 KNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF---------VKCDRLDCAYKIFDEMA 102 (641)
Q Consensus 32 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~A~~~f~~~~ 102 (641)
.|++++|++.|++..+.... +...+..+.+.+...|+.+.|....+..++... ...++.++|..+++++.
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~ 135 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELL 135 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHH
Confidence 37777777777777664333 244566666777777777777777777665444 33366777777777764
Q ss_pred --CC-CcccHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCChhhHHHH-HHHHhccCChhHHHHHHHHHHHH
Q 048321 103 --VR-DVASWNAMLVG--------FAQMGFLENVLRLFYNMRLVGIQADFVTVMGL-TQAAIHAKHLSLLKSVHSFGIHI 170 (641)
Q Consensus 103 --~~-~~~~~~~li~~--------~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 170 (641)
.| +...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...++++++..++..+.+.
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 22 33344333333 4444 34444443 3332233344444444 67777777777777777777776
Q ss_pred cCCCChhHHHHHHHHhHc-CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCC-CChhhHH
Q 048321 171 GVDADVSVCNTWISSYAK-CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR-LDVTTVV 248 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 248 (641)
+.. +..-...|..+|.. .++ +.+..+++.... .+...+..+...|.+.|+.++|.++++++...-.. |+..++.
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 533 34445555566666 355 666666554322 56677777777777777777777777776543221 2222222
Q ss_pred HH------------------------------HHHhcCCCchHHHHHH-----------------------------HHH
Q 048321 249 SL------------------------------LSSFVCPEALVQGRLV-----------------------------HSH 269 (641)
Q Consensus 249 ~l------------------------------l~~~~~~~~~~~a~~~-----------------------------~~~ 269 (641)
.+ +..+.+.++++.++++ +..
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 21 2222233333322222 222
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCc----chHHHHHHHHHhCCC---hhHHHHH--------
Q 048321 270 GIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD--RTR----VSWTAMISGYAQKGD---LDEALRL-------- 332 (641)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~---~~~A~~~-------- 332 (641)
+.+.. +-+....-.+.-...+.|+.++|.++|+...+ ++. ..-+-++..|.+.+. ..++..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 22211 22333334444455677888999999887733 222 233456677776655 3333333
Q ss_pred --------------HHHHHH-cCCCC---CHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 333 --------------FFAMEA-AGELP---DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 333 --------------~~~m~~-~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
+..... .+..| +...+..+..++.. ++.++|...+....... |+......+...+...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC
Confidence 111111 11223 44555555555554 78888999777777653 45444444555667899
Q ss_pred CHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHH
Q 048321 395 SIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 395 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+...+...|++++|...++.
T Consensus 524 r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999998765 445567777888899999999999999999863 5543 333444455667999999999999
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 472 QYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
..+ +.|+...|..+..++.+.|++++|+..+++.. ..| +...+..+..++...|+.++|+..++++++++|++
T Consensus 602 AL~-----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN-----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH-----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 985 55788899999999999999999999999977 555 56678888889999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 550 AAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+..+..++.+|...|++++|...+++..+..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887643
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7.7e-23 Score=197.18 Aligned_cols=452 Identities=13% Similarity=0.081 Sum_probs=358.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcC
Q 048321 110 NAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKC 189 (641)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 189 (641)
..|..-..+.|++.+|.+.-...-.+. ..+..+...+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345555667788888887665544332 1122222222233344444444433333333321 22456888899999999
Q ss_pred CChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHhcCCCchHHHHHHH
Q 048321 190 DDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVS-LLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 190 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~ 267 (641)
|++++|..+++.+.+. +..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +-......|++++|..-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999998887 55688999999999999999999999999877 4466555433 333334578899999888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 048321 268 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344 (641)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 344 (641)
.+.++.. +--..+|+.|...+-..|++..|+..|++..+-|+ .+|-.|...|...+.+++|+..|.+.... +|+
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 8887764 23357788999999999999999999998855443 47888999999999999999999887764 666
Q ss_pred H-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 048321 345 L-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAG 420 (641)
Q Consensus 345 ~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 420 (641)
. +.+..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++...|++.+|.+.++.... .-..+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4 567777778899999999999999998864 44478999999999999999999999998775 345688899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccC
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKG 498 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 498 (641)
|...|.+++|..+|....+ +.|.-. .++.|...|-.+|++++|...|++..+ +.|+ ...|+.+...|-..|
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-----I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-----IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-----cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999988 467754 899999999999999999999999986 7788 678999999999999
Q ss_pred ChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 499 KLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+.+.|++.+.+.. ..|. ....+.|.+.+...|+..+|+..++.++++.|+.+.+|-.+..++.-..+|.+--+.++++
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999876 5564 5588999999999999999999999999999999999999999888888887744444433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=3.1e-20 Score=202.14 Aligned_cols=547 Identities=9% Similarity=-0.010 Sum_probs=388.4
Q ss_pred hHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC-
Q 048321 7 PPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF- 85 (641)
Q Consensus 7 ~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~- 85 (641)
+++.+..|.. .. .+..|...|.+.|++++|+..+++..+. .|+...|..++..+ ++...+..+++.+++...
T Consensus 68 ~~Al~~dP~n-~~-~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~ 140 (987)
T PRK09782 68 EYIHQQVPDN-IP-LTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA 140 (987)
T ss_pred HHHHHhCCCC-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC
Confidence 3444444443 44 7899999999999999999999999884 46656566655444 788888888888887554
Q ss_pred ----------c-------CCCChhHHHHHhh-ccCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 048321 86 ----------V-------KCDRLDCAYKIFD-EMAVR--DVASWNAM-LVGFAQMGFLENVLRLFYNMRLVGIQADFVTV 144 (641)
Q Consensus 86 ----------~-------~~~~~~~A~~~f~-~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~ 144 (641)
. ...+.++|.+.++ +...| +..+.... ...|.+.|++++|++++.++.+.+ ..+..-.
T Consensus 141 n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~ 219 (987)
T PRK09782 141 CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAER 219 (987)
T ss_pred ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 1 0233344444444 22233 34434444 889999999999999999999976 2333335
Q ss_pred HHHHHHHhc-cCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC---CCCchhHHHH-----
Q 048321 145 MGLTQAAIH-AKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER---LRTVVSWNSM----- 215 (641)
Q Consensus 145 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l----- 215 (641)
..+-.++.. .++ +.+..++.. .+..++.++..+.+.|.+.|+.++|.+++.+++.. .|...+|--+
T Consensus 220 ~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~ 294 (987)
T PRK09782 220 RQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS 294 (987)
T ss_pred HHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhcc
Confidence 556566666 355 666666442 33468889999999999999999999999998765 2333332221
Q ss_pred -------------------------HHHHhcCCCchHHHHHHH-----------------------------HHHHCCCC
Q 048321 216 -------------------------VAGCTYGDKFDDSLNFYR-----------------------------HMMYNGFR 241 (641)
Q Consensus 216 -------------------------i~~~~~~g~~~~A~~~~~-----------------------------~m~~~g~~ 241 (641)
+.-+.+.+.++.+.++.. .|.+.. +
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~ 373 (987)
T PRK09782 295 ANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-P 373 (987)
T ss_pred CchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-C
Confidence 333444455544443311 111100 0
Q ss_pred CChhhHHHHHHHhcCCCchHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---HHHHHHH---------------
Q 048321 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY-G-FDLDVSVINTLISMYSKCGD---IDSARVL--------------- 301 (641)
Q Consensus 242 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~--------------- 301 (641)
-+....--+--.....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 01111111222234568888999998888763 1 23355566688888888876 3333222
Q ss_pred ----------HhcCC---CC--CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHH
Q 048321 302 ----------FDGIC---DR--TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKW 366 (641)
Q Consensus 302 ----------~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 366 (641)
+.... ++ +...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 11111 22 45577888877776 8899999988887765 4676554444555578999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCC
Q 048321 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTT---MIAGCALNGEFVEALDLFHQLMELDLR 443 (641)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (641)
.++.+... +|+...+..+...+.+.|++++|...|+...+.++..++. +...+...|++++|+..|++..+. .
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 99987654 4444556677888999999999999999887643333333 333344559999999999999986 6
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHH
Q 048321 444 PNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGT 521 (641)
Q Consensus 444 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ 521 (641)
|+...+..+..++.+.|++++|...++......+ .+...+..+..++...|++++|++.+++.. ..| ++..+..
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEP----NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7877888889999999999999999999996433 446788889999999999999999999976 445 6678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+..++...|++++|+..++++++++|++.......++++.+..+++.|.+-++..-.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999987765433
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.5e-19 Score=192.09 Aligned_cols=417 Identities=11% Similarity=-0.019 Sum_probs=268.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCc
Q 048321 147 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKF 225 (641)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 225 (641)
.-..+...|+++.|...+...++. .|+...|..+..+|.+.|++++|...++..... +.+...|..+..+|...|++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 334455556666666666665543 345555666666666666666666666666554 33455666666666666776
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048321 226 DDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305 (641)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 305 (641)
++|+..|......+- .+......++..... ..+........+.. +.+...+..+.. |...........-++..
T Consensus 211 ~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 666666655433211 111111111111100 11111122222211 122222222222 21111111111111111
Q ss_pred CCCC---cchHHHHHHHH---HhCCChhHHHHHHHHHHHcC-CCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCC
Q 048321 306 CDRT---RVSWTAMISGY---AQKGDLDEALRLFFAMEAAG-ELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLK 377 (641)
Q Consensus 306 ~~~~---~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 377 (641)
.+.+ ...+..+...+ ...+++++|.+.|++....+ ..|+ ...+..+...+...|++++|...++..++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 1111 11111111111 23467899999999988764 2343 3456666677788999999999999988764 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVL 453 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 453 (641)
.....|..+...+...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+. ..+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 4466788888899999999999999987755 35778999999999999999999999999986 5654 4667777
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh-hH-------HHHHHH
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GI-------WGTLLC 524 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~ll~ 524 (641)
..+.+.|++++|...|+...+..+ .+...+..+..++...|++++|++.|++.. ..|+. .. ++..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFP----EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 788999999999999999986433 447788999999999999999999999865 43421 11 112222
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+...|++++|+..++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344699999999999999999998889999999999999999999999987653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-20 Score=182.51 Aligned_cols=418 Identities=11% Similarity=0.111 Sum_probs=336.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCc
Q 048321 147 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKF 225 (641)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 225 (641)
+..-..+.|++++|++....+-... +.+....-.+-..+....+.+.....-....+. +.-..+|..+.+.+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344456678888877655544332 112222222235566666666544333222222 34577899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHh
Q 048321 226 DDSLNFYRHMMYNGFRL-DVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDV-SVINTLISMYSKCGDIDSARVLFD 303 (641)
Q Consensus 226 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 303 (641)
++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|...++.+ |+. .+.+.+....-..|++++|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999885 35 45778899999999999999999999988764 443 344456666677899999998887
Q ss_pred cCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc
Q 048321 304 GICD--R-TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDN 379 (641)
Q Consensus 304 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (641)
+..+ | =.+.|+.|...+...|+...|+..|++..+. .|+- ..|..|...+...+.++.|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 6633 2 3468999999999999999999999998764 5653 467778888888888899988888877643 344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQA 455 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 455 (641)
..++..+...|-..|.++.|...+++..+ | -...|+.|..++...|++.+|...|.+.+.. .|+.. ..+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 66777788889999999999999999876 3 3579999999999999999999999999985 67765 88999999
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh-hHHHHHHHHHHHcCCH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHLNI 532 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~ll~~~~~~g~~ 532 (641)
+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|+..+++.. ++|+. ..++.+...|...|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~-----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE-----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh-----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999986 4465 6678999999999999999999999976 78864 4899999999999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+.|.+.+.+++.++|.-++++..|+.+|-.+|+..+|+.-+++...-
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999988887653
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.3e-19 Score=184.60 Aligned_cols=293 Identities=13% Similarity=0.079 Sum_probs=202.5
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCcCch
Q 048321 288 MYSKCGDIDSARVLFDGICD---RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD---LVTVLSMISGCGQSGAL 361 (641)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~ 361 (641)
.+...|++++|...|+++.. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666665522 2233555666666666666666666666655422221 13445555666666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------hhHHHHHHHHHHHcCChHHHHHH
Q 048321 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI--------VVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666543 3455666677777777777777777777664411 12355667777888999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 434 FHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 434 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
|+++.+. .|+ ...+..+...+.+.|++++|.++|+.+.+..+ ......+..++.+|.+.|++++|...++++.
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP---EYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988875 344 34666777788889999999999998885321 1124567888889999999999999998876
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCce
Q 048321 512 IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL---GGRWDGVANIRTMMKRNQVKKFPGQ 587 (641)
Q Consensus 512 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~eA~~~~~~m~~~~~~~~~~~ 587 (641)
..|+...+..+...+...|++++|..+++++++..|+++ .+..+...+.. .|+.++|..++++|.++++++.|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 567777778888889999999999999999999999865 44444544443 5689999999999998888877763
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.1e-19 Score=183.03 Aligned_cols=312 Identities=13% Similarity=0.064 Sum_probs=214.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC---hhHHHHHHHHhHcC
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD---VSVCNTWISSYAKC 189 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 189 (641)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567889999999999998753 23344677788888888888888888888876432221 24567777888888
Q ss_pred CChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHH
Q 048321 190 DDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHS 268 (641)
Q Consensus 190 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 268 (641)
|+++.|..+|+++... +.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 8888888888887764 45566777888888888888888888887766432211100
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 048321 269 HGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL 345 (641)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 345 (641)
....+..+...+.+.|++++|...|+++. +.+...+..+...|.+.|++++|.+.|+++...+.....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123445566666777777777776652 223446667777788888888888888887765322223
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCAL 423 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 423 (641)
.++..+..++...|+.++|...++.+.+.. |+...+..++..+.+.|++++|..+|+++.+ |+..+++.++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhh
Confidence 456677777777788888888777777653 4445557778888888888888888876654 677777777776664
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 048321 424 ---NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEK 464 (641)
Q Consensus 424 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 464 (641)
.|+.++++.++++|.+.++.|++. ..|.+.|....
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCc
Confidence 457888888888888877777665 33666664433
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.3e-17 Score=168.26 Aligned_cols=564 Identities=12% Similarity=0.028 Sum_probs=399.4
Q ss_pred CchhHHhcccCC--CChhhhHHHHHHHHH--hCCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhccCCchHHhHHH
Q 048321 4 SSLPPRLNRIYR--SSTINQWNSQIREAV--NKNEAHKTLLLFRQMKQN--DIEPNNLTFPFIAKACAKLSDLIYSQMIH 77 (641)
Q Consensus 4 ~~a~~~f~~~~~--~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~~~~i~ 77 (641)
++|...|...-. |+.+ .-.+..++. ..+++..|+.+|...... ...||...- +=.++.+.++...|..-+
T Consensus 147 ~~A~a~F~~Vl~~sp~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHhhCCcch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 456666654432 3322 344455554 467999999999997654 344555321 113334666777766666
Q ss_pred HHHhhccC----------------cCCCChhHHHHHhhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 048321 78 GHIVKSPF----------------VKCDRLDCAYKIFDEM---AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQ 138 (641)
Q Consensus 78 ~~~~~~~~----------------~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 138 (641)
.++++..+ -....+..+..++... ...|++..|.|.+.|.-.|++..++.+...+...-..
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 66665443 2223455555555543 2458889999999999999999999999999875311
Q ss_pred --CChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHH
Q 048321 139 --ADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSM 215 (641)
Q Consensus 139 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 215 (641)
.-...|-.+-+++-..|+++.|...|....+.....-+..+-.|..+|.+.|+++.+...|+.+... +.+..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1233578888999999999999999988877542222334456789999999999999999998886 4456666677
Q ss_pred HHHHhcCC----CchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHH----HHHhCCCCchhHHHHHHH
Q 048321 216 VAGCTYGD----KFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSH----GIHYGFDLDVSVINTLIS 287 (641)
Q Consensus 216 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~ 287 (641)
...|...+ ..+.|..++.+..+.- +-|...|..+...+-. ++.......+.. +...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 77777665 3466666666665532 2455566555555544 343333555544 445566688899999999
Q ss_pred HHHhcCCHHHHHHHHhcCCC-------CCc------chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 048321 288 MYSKCGDIDSARVLFDGICD-------RTR------VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVT-VLSMIS 353 (641)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~ 353 (641)
.+...|+++.|...|+.... +|. .+--.+...+-..++++.|.+.|....+. .|.-++ |..+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999976521 122 11223455566678999999999999886 466543 333333
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHH-----
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCAL----- 423 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~----- 423 (641)
.....+...+|...+..+.... ..++.+++-+...|.+...+..|.+-|..+.+ +|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3334567888988888888755 56677777788899998888888886655443 355555555554432
Q ss_pred -------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc
Q 048321 424 -------NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR 496 (641)
Q Consensus 424 -------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 496 (641)
.+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|+.+|.+..+.. .....+|-.+.++|..
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT----SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH----hhCCceeeeHHHHHHH
Confidence 245678999999998863 3355677888888999999999999999998643 2466788899999999
Q ss_pred cCChHHHHHHHHhCC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH-------------
Q 048321 497 KGKLKEALDFVQSMP----IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK------------- 559 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------- 559 (641)
+|++-.|+++|+... .+.+..+...|..++...|.+.+|.+.+..+..+.|.++..-+.++-+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 999999999999854 344677899999999999999999999999999999998877766644
Q ss_pred ------HHhcCCchHHHHHHHHHHhCCC
Q 048321 560 ------YALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 560 ------~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
....+..++|.++|..|...+-
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445667788888888877553
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.4e-18 Score=180.95 Aligned_cols=354 Identities=11% Similarity=-0.026 Sum_probs=276.9
Q ss_pred HcCCChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHH
Q 048321 187 AKCDDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQ 262 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 262 (641)
.+..+++.-.-.|...++. ..+..-...++..+.+.|++++|..+++........+ ...+..++.++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 4566777777777776664 1234445667788889999999999999988765433 3344445566667999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 048321 263 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (641)
|...++.+.... +.+...+..+...+...|++++|...|++.. +.+...|..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 5567788889999999999999999998873 345668888999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHH
Q 048321 340 GELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTT 416 (641)
Q Consensus 340 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 416 (641)
...+.. .+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|...|+.... .+...+..
T Consensus 174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 432222 2222 334678899999999999988765334445556667888999999999999998765 35678888
Q ss_pred HHHHHHHcCChHH----HHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 417 MIAGCALNGEFVE----ALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 417 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
+...+...|++++ |+..|++..+. .|+.. .+..+...+...|++++|...++.+.+..+ .+...+..+.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P----~~~~a~~~La 325 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP----DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHH
Confidence 9999999999986 89999999985 56654 788888899999999999999999986433 3356677888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCCChhHH-HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKSDAGIW-GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+|.+.|++++|++.++++. ..|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999877 56665443 3456678899999999999999999999853
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.3e-17 Score=178.82 Aligned_cols=399 Identities=11% Similarity=-0.012 Sum_probs=184.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCC
Q 048321 145 MGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGD 223 (641)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g 223 (641)
.-.+......|+.++|.+++....... +.+...+..+...+...|++++|..+|++.... +.+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 333444444455555555554444311 223334555555555555555555555554443 333444555555555555
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048321 224 KFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFD 303 (641)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 303 (641)
++++|+..+++..+. .|+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++...|..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 666666555555543 1222114444445555555555555555555543 3344455556666666777777777776
Q ss_pred cCCCCCcc--------hHHHHHHHHH-----hCCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHhcCcCch
Q 048321 304 GICDRTRV--------SWTAMISGYA-----QKGDL---DEALRLFFAMEAA-GELPDLV-TVL----SMISGCGQSGAL 361 (641)
Q Consensus 304 ~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~~ 361 (641)
.... ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 6543 111 1111111111 11122 4555555555532 1122211 110 001222334555
Q ss_pred HHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChHHHHHH
Q 048321 362 ELGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALPEKI-------VVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
++|+..|+.+.+.+.+ |+ .....+...|...|++++|...|+++...+ ...+..+..++...|++++|+++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 5555555555544311 11 111113444555555555555555443211 11233333344455555555555
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC---hhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 434 FHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE---LDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 434 ~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
++++... .|... .+. ...-.|+ ...+..++..+...|++++|++++++
T Consensus 333 l~~~~~~--~P~~~~~~~--------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 333 TAHTINN--SPPFLRLYG--------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred HHHHhhc--CCceEeecC--------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555443 11100 000 0000122 12334444555555555555555555
Q ss_pred CC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 510 MP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 510 ~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+. .+.+...+..+...+...|+.++|+..++++++++|+++..+..++.++.+.|+|++|..+++.+.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44 222344555555555555666666666666666666555555555555556666666665555554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.7e-17 Score=181.19 Aligned_cols=372 Identities=9% Similarity=-0.036 Sum_probs=236.1
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHhcccC-CCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048321 174 ADVSVCNTWISSYAKCDDLKMAELVFCGIEE-RLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLS 252 (641)
Q Consensus 174 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 252 (641)
.+.....-.+......|+.++|++++.+... .+.+...+..+...+...|++++|.+++++..+.. +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455556677778888999999999988775 34555668888889999999999999999987742 233445566777
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHH
Q 048321 253 SFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEA 329 (641)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 329 (641)
.+...|++++|...++.+++.. +.+.. +..+..++...|+.++|+..++++. +.+...+..+...+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7788888888888888888774 44555 7778888888888888888888772 23445566677777788888888
Q ss_pred HHHHHHHHHcCCCCCHH------HHHHHHHHhc-----CcCch---HHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcC
Q 048321 330 LRLFFAMEAAGELPDLV------TVLSMISGCG-----QSGAL---ELGKWFDNYACSG-GLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 330 ~~~~~~m~~~~~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 394 (641)
++.++.... .|+.. ....++.... ..+++ +.|...++.+.+. ...|+.... +
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~--~-------- 236 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD--Y-------- 236 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH--H--------
Confidence 888775543 33310 0001111110 01111 3333333333321 011111000 0
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 395 SIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLR-PNRVTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
.......+..+...|++++|+..|+++.+.+.. |+.. -..+..+|...|++++|...|+.+.
T Consensus 237 ----------------~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 237 ----------------QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred ----------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 000001122334556666666666666654311 2221 1113445666666666666666655
Q ss_pred hhhCCCCCC--ChhHHHHHHHHhhccCChHHHHHHHHhCC-CC-------------CCh---hHHHHHHHHHHHcCCHHH
Q 048321 474 DDKGISYNP--ELDHYSCMADLLGRKGKLKEALDFVQSMP-IK-------------SDA---GIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 474 ~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-------------p~~---~~~~~ll~~~~~~g~~~~ 534 (641)
+..+ ..+ .......+..++...|++++|..+++.+. .. |+. ..+..+...+...|+.++
T Consensus 300 ~~~p--~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHPE--TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcCC--CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 3222 111 12345555556666666666666666654 21 232 244566778889999999
Q ss_pred HHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
|+..+++++...|+++..+..++.++...|++++|++.+++..+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999887654
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.5e-17 Score=176.71 Aligned_cols=442 Identities=8% Similarity=-0.062 Sum_probs=305.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 187 (641)
.+......+.+.|++++|+..|++..+ +.|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 355667788899999999999999887 56888889999999999999999999999999864 235668888999999
Q ss_pred cCCChhHHHHHHhcccCCC-CCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHH
Q 048321 188 KCDDLKMAELVFCGIEERL-RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLV 266 (641)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 266 (641)
..|++++|...|....... .+......++..+.. ..+........+.. .++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999998887654421 111111222221111 12223333332221 122222222211 1111111111111
Q ss_pred HHHHHHhCCCCch-hHHHHHHHH---HHhcCCHHHHHHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 048321 267 HSHGIHYGFDLDV-SVINTLISM---YSKCGDIDSARVLFDGICD------RTRVSWTAMISGYAQKGDLDEALRLFFAM 336 (641)
Q Consensus 267 ~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (641)
+....+ ..+.. ..+..+... ....+++++|.+.|+.... .+...|+.+...+...|++++|+..|++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111110 11110 111111111 1234688999999987643 23456888888899999999999999998
Q ss_pred HHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChh
Q 048321 337 EAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVV 412 (641)
Q Consensus 337 ~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 412 (641)
.+. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 875 455 4577777888889999999999999998865 55678899999999999999999999998865 3567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-------
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL------- 484 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~------- 484 (641)
.|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|+...+. .|+.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~p~~~~~~~~~ 507 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-----EKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCccccccccH
Confidence 7888899999999999999999999875 465 457888888999999999999999998853 2321
Q ss_pred -hHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 485 -DHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 485 -~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
..++.....+...|++++|.+++++.. ..|+ ...+..+...+...|++++|+..++++.++.+.... ..
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~ 579 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LV 579 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HH
Confidence 112222334445799999999999864 5554 457888999999999999999999999998776322 22
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
....|.+|.++....++
T Consensus 580 ~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 580 QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33356666666554443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.4e-17 Score=174.89 Aligned_cols=327 Identities=8% Similarity=-0.082 Sum_probs=266.5
Q ss_pred ChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHH
Q 048321 243 DVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISG 319 (641)
Q Consensus 243 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~ 319 (641)
+......++..+.+.|+++.|..++..++.... -+......++.++...|++++|...|+++ .+.+...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344456677888899999999999999988763 34555666667777899999999999988 33456688889999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 048321 320 YAQKGDLDEALRLFFAMEAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (641)
+.+.|++++|...|++..+. .|+ ...+..+...+...|+.++|...+..+..... .+...+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHH
Confidence 99999999999999999875 444 55677788889999999999999998877542 233344333 34788999999
Q ss_pred HHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHH----HHHHH
Q 048321 399 ARELFYALPEK----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEK----GWAIS 469 (641)
Q Consensus 399 A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~----a~~~~ 469 (641)
|...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+. ..+..+...+...|++++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999987653 2334455677888999999999999999986 4554 467778889999999986 89999
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
+.+.+..+ .+...+..++..+.+.|++++|+..+++.. ..| +...+..+...+...|++++|+..++++++.+|
T Consensus 274 ~~Al~l~P----~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 274 RHALQFNS----DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99986433 457788999999999999999999999976 455 456788888999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 548 HSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+++..+..++.+|...|++++|.+.+++..+..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 987777778999999999999999999887654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5.9e-16 Score=158.14 Aligned_cols=533 Identities=10% Similarity=0.019 Sum_probs=375.6
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--ccCCchHHhHHHHHHhhccC--------------cCCCChhHHHHHh
Q 048321 35 AHKTLLLFRQMKQNDIEPNNLTFPFIAKACA--KLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIF 98 (641)
Q Consensus 35 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~A~~~f 98 (641)
.+.|...|....+.. |+.. ...+-+||. ..+++..+..++..++.... +++++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 478888888877643 3222 344555554 45678888888877654332 7788888998888
Q ss_pred hccCCCCcccHHHHHHHH---Hhc---CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcC
Q 048321 99 DEMAVRDVASWNAMLVGF---AQM---GFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV 172 (641)
Q Consensus 99 ~~~~~~~~~~~~~li~~~---~~~---g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 172 (641)
.+..+-|+..-++++... ... ..+..++.++...-... .-|+...+.|..-+...|++..+..+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 887655554444444322 122 23455666665554432 34566778888888889999999999888887542
Q ss_pred CC--ChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCC--chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHH
Q 048321 173 DA--DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRT--VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVV 248 (641)
Q Consensus 173 ~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 248 (641)
.- -...|--+..+|...|+++.|...|.+.....++ +..+--+...|.+.|+++.+...|+...... +-+..|..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 21 1234566788899999999999999877665233 4456667888999999999999999987752 23445666
Q ss_pred HHHHHhcCCC----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCcchHHHH
Q 048321 249 SLLSSFVCPE----ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI--------CDRTRVSWTAM 316 (641)
Q Consensus 249 ~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~l 316 (641)
.+...|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+. ++.+|... ....+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 6666666554 4566666666666554 556777777777776544332 24444322 33456678999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAA---GELPDL------VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALI 387 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 387 (641)
...+...|++++|...|.+.... ...+|. .+-..+....-..++.+.|.+.|..+.+.. +.-+..|-.+.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhh
Confidence 99999999999999999988654 222333 222334445566779999999999998864 33334444444
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhc-----
Q 048321 388 DMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTH----- 458 (641)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~----- 458 (641)
-+....++..+|...++.... .++..|+.+...+.....+..|.+-|+.....- ..+|..+..+|.+.|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 344445778899999988765 567788888888999999999998887776532 23566666666664433
Q ss_pred -------cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc
Q 048321 459 -------TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH 529 (641)
Q Consensus 459 -------~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~ 529 (641)
.+..++|+++|.++++..+ -+...-+-++-.++..|++.+|.++|.... ...+..+|..+...|...
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dp----kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDP----KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCc----chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 2457789999999886443 567777889999999999999999999976 333567899999999999
Q ss_pred CCHHHHHHHHHHhHccC--CCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 530 LNIEIGEYVAYCLFKLE--PHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|++..|+++|+..++.. -+++....+|+.++.+.|+|.+|.+........
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999987653 346778889999999999999999988776654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=9.2e-16 Score=142.53 Aligned_cols=435 Identities=13% Similarity=0.115 Sum_probs=276.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--ccCCchHHhHHHHHHhh---ccC-----cCCCC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACA--KLSDLIYSQMIHGHIVK---SPF-----VKCDR 90 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~~~~i~~~~~~---~~~-----~~~~~ 90 (641)
+=|.|+.. ...|.+..+.-+|+.|+..|+..+...-..+++..+ .+..+..+ -.++.+. .|- ++.|.
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~--E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFA--EWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcch--hHHHHhhcccccccccccccccc
Confidence 55666554 567899999999999999998888877777766544 33333321 1122221 111 66777
Q ss_pred hhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHH
Q 048321 91 LDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI 170 (641)
Q Consensus 91 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (641)
+.+ -+|+ ..++...+|..||.++|+-...+.|.++|++-.....+.+..+||.+|.+-+-. ..+.+..+|+..
T Consensus 195 vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq 267 (625)
T KOG4422|consen 195 VAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ 267 (625)
T ss_pred HHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh
Confidence 665 4444 445566799999999999999999999999999888899999999999886543 348899999999
Q ss_pred cCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 048321 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSL 250 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (641)
.+.||.+|+|+++++.++.|+++.|.+.+ ++++.+|++.|+.|...+|..+
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aa-----------------------------lqil~EmKeiGVePsLsSyh~i 318 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAA-----------------------------LQILGEMKEIGVEPSLSSYHLI 318 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHH-----------------------------HHHHHHHHHhCCCcchhhHHHH
Confidence 99999999999999999999998887553 4455666667777777777766
Q ss_pred HHHhcCCCchHH-HHHHHHHHHH----hCCC----CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---c
Q 048321 251 LSSFVCPEALVQ-GRLVHSHGIH----YGFD----LDVSVINTLISMYSKCGDIDSARVLFDGICD--------RT---R 310 (641)
Q Consensus 251 l~~~~~~~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~ 310 (641)
|..+++.++..+ +..+..++.. ..+. .|...+..-+..|.+..+.+-|.++-.-... ++ .
T Consensus 319 ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 319 IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 666666665533 3333333322 1121 2334455555666666666666555433211 11 1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
.-|..+....++....+.-+..|+.|.-.-.-|+..+...++.+....+.++...++|..++..|.........-++..+
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 23555666777777888888888888887778888888889998888888988888888888877544333333222222
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048321 391 SKCGSIGDARELFYALPEKIVVSWTTMIAGCALN-GEFVEA-LDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
++.. ..|+...-..+-...++. -++.++ ...-.+|++..+.| ...+.++..+.+.|..++|+++
T Consensus 479 ~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 479 ARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred hcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHH
Confidence 2221 012211111111111110 112222 22334455543333 3455555566788888888888
Q ss_pred HHHHHhhhCCCCCCChhHHHHHH---HHhhccCChHHHHHHHHhC
Q 048321 469 SIIQYDDKGISYNPELDHYSCMA---DLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~ 510 (641)
|....+... -.|.....++|+ +.-.+......|..+++-|
T Consensus 545 l~l~~~~~~--~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 545 LGLFLRKHN--KIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHhcCC--cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888764444 334444444433 4444555555565555554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=6.3e-16 Score=165.35 Aligned_cols=426 Identities=9% Similarity=-0.052 Sum_probs=272.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhH
Q 048321 116 FAQMGFLENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKM 194 (641)
Q Consensus 116 ~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 194 (641)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...+++... ..+........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45566666666666666553 34431 112555555566666666666666651 001111222222345666666777
Q ss_pred HHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 048321 195 AELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY 273 (641)
Q Consensus 195 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (641)
|.++|+++.+. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 77776666665 444555556666666666677777666666553 244444433333333344454466666666666
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-Ccch--H------HHHHHHH-----HhCCC---hhHHHHHHHHH
Q 048321 274 GFDLDVSVINTLISMYSKCGDIDSARVLFDGICDR-TRVS--W------TAMISGY-----AQKGD---LDEALRLFFAM 336 (641)
Q Consensus 274 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~------~~li~~~-----~~~g~---~~~A~~~~~~m 336 (641)
. +.+...+..++....+.|-...|.++...-+.- +... | ..++..- ....+ .+.|+.-++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 445666666777777777777776666554211 0000 0 0011000 01122 34556666665
Q ss_pred HHc-CCCCCHH-----HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 048321 337 EAA-GELPDLV-----TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK- 409 (641)
Q Consensus 337 ~~~-~~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 409 (641)
... +..|... ...--+-++...++..+++..++.+...+.+....+-.++.++|...+++++|..+|..+...
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 542 2223321 222345567788899999999999998887666778889999999999999999999987442
Q ss_pred --------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCC--hh-hHHHHHHHHhccCChHHHHH
Q 048321 410 --------IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-----------RPN--RV-TFLAVLQACTHTGFLEKGWA 467 (641)
Q Consensus 410 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~~~~~~g~~~~a~~ 467 (641)
+......|.-+|...+++++|..+++++.+.-. .|| -. .+..+...+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233356788889999999999999999987311 122 22 23344557788899999999
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 468 ISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 468 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
.++.+....+ -|......+.+++...|++.+|++.++... ..|+ ..+...++.+....|++++|..+.+.+.+.
T Consensus 438 ~le~l~~~aP----~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAP----ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999986544 678888899999999999999999997766 5554 456677778888889999999999999999
Q ss_pred CCCCCc
Q 048321 546 EPHSAA 551 (641)
Q Consensus 546 ~p~~~~ 551 (641)
.|+++.
T Consensus 514 ~Pe~~~ 519 (822)
T PRK14574 514 SPEDIP 519 (822)
T ss_pred CCCchh
Confidence 998763
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.9e-15 Score=159.32 Aligned_cols=421 Identities=9% Similarity=-0.041 Sum_probs=307.4
Q ss_pred HhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHH-HH--HHHHhcCCCchH
Q 048321 151 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWN-SM--VAGCTYGDKFDD 227 (641)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~l--i~~~~~~g~~~~ 227 (641)
..+.|+++.|...+.++.+....-...++ .++..+...|+.++|+..+++... |+...+. .+ ...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45789999999999999886433222345 888889999999999999999985 5443333 33 457888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC- 306 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 306 (641)
|+++|+++.+... -+...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999988642 23455667778889999999999999999876 3455555555555555666766999999883
Q ss_pred --CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHh---c--CcCc---hHHHHHHHHH
Q 048321 307 --DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV------TVLSMISGC---G--QSGA---LELGKWFDNY 370 (641)
Q Consensus 307 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------t~~~ll~~~---~--~~~~---~~~a~~~~~~ 370 (641)
+.+...+..+..++.+.|-...|+++..+-... +.|... .....+..- . ...+ .+.|..-++.
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 335557788888999999999999877653211 111110 011122111 0 1122 3444445555
Q ss_pred HHH-cCCCCc-hhH-HH---HHHHHHHhcCCHHHHHHHHhhCCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 371 ACS-GGLKDN-VMV-CN---ALIDMYSKCGSIGDARELFYALPEKI----VVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 371 ~~~-~~~~~~-~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+.. .+-.|. ... .. -.+-++.+.|++.++.+.|+.+.... ..+-..+..+|...+++++|+.+|+++...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 444 222232 112 22 33556788999999999999998632 245667889999999999999999999764
Q ss_pred CC----CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCC----------CCCCC-hhHHHHHHHHhhccCChHHHH
Q 048321 441 DL----RP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI----------SYNPE-LDHYSCMADLLGRKGKLKEAL 504 (641)
Q Consensus 441 g~----~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~p~-~~~~~~l~~~~~~~g~~~~A~ 504 (641)
.- .| +......|.-++..++++++|.++++.+.+..+. ...|| ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 31 12 2223567888999999999999999999863220 01223 233455678889999999999
Q ss_pred HHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 505 DFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 505 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.++++. .+-|...+..+...+...|.+.+|+..++.+..++|++.......+.++.+.|+|.+|..+.+.+.+
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999987 4457889999999999999999999999999999999999999999999999999999998876644
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2e-15 Score=141.16 Aligned_cols=445 Identities=10% Similarity=0.052 Sum_probs=283.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHhccCChhHHHHHHHHHHHHcCCCCh----hHHHHHHHHhHc
Q 048321 114 VGFAQMGFLENVLRLFYNMRLVGIQADFVTVM-GLTQAAIHAKHLSLLKSVHSFGIHIGVDADV----SVCNTWISSYAK 188 (641)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 188 (641)
.-|..+.-..+|+..|+-..+....||...+- .+-..+.+.+.+..|...++..+..-...+. .+.+.+.-.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 34455556677777777777766666654332 1233445566677777777766654322222 233334445677
Q ss_pred CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhH--------HHHHHHhcCC---
Q 048321 189 CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTV--------VSLLSSFVCP--- 257 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~--- 257 (641)
.|.++.|+.-|+...+..||..+--.|+-++...|+-++..+.|.+|...-..||..-| ..|+.-..+.
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 78888888888777665566555444455555667777777778877654322222211 1111111111
Q ss_pred ------C--chHHHHHHHHHHHHhCCCCchh-------------HHH--------HHHHHHHhcCCHHHHHHHHhcCCCC
Q 048321 258 ------E--ALVQGRLVHSHGIHYGFDLDVS-------------VIN--------TLISMYSKCGDIDSARVLFDGICDR 308 (641)
Q Consensus 258 ------~--~~~~a~~~~~~~~~~g~~~~~~-------------~~~--------~li~~~~~~g~~~~A~~~~~~~~~~ 308 (641)
+ +.+++.-.-..++.--+.|+-. .+. .-.--|.+.|+++.|.+++.-..+.
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 1 1111111111111111222210 000 0112356677777777776666554
Q ss_pred CcchHHH----HHH-HHHh-CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhH
Q 048321 309 TRVSWTA----MIS-GYAQ-KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 309 ~~~~~~~----li~-~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
|..+-++ |-. -|.+ -.++..|..+-+...... +-+....+.--......|++++|...+.+.+...-......
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 4433222 111 1222 234455555444433221 22222222222233456899999999999987653333334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT 459 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (641)
|| +.-.+-+.|++++|++.|-.+.. .++...-.+.+.|-...+...|++++.+.... ++.|+.....|...|-+.
T Consensus 528 fn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 43 34457789999999999987654 67777788888999999999999999877664 344556788888899999
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHH-HHcCCHHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCAC-KIHLNIEIGEY 537 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~-~~~g~~~~a~~ 537 (641)
|+-.+|.+.+-...+- ++.+.++...|..-|....-+++|+.+|++.. ..|+..-|..++..| ++.|+++.|..
T Consensus 606 gdksqafq~~ydsyry----fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY----FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cchhhhhhhhhhcccc----cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999987766533 44789999999999999999999999999977 899999999999887 57899999999
Q ss_pred HHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 538 VAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
.++..+...|.+....-.|+.+....|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999888874
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.5e-12 Score=127.76 Aligned_cols=528 Identities=12% Similarity=0.042 Sum_probs=319.8
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC---------cCCCChhHHHHHhhccCC
Q 048321 33 NEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF---------VKCDRLDCAYKIFDEMAV 103 (641)
Q Consensus 33 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~A~~~f~~~~~ 103 (641)
++..+|..+++..++.+.. ++..|..-.+.=-..|.+..|+.+...-.+... ++....+.|..+.....+
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4667888888888876543 222333322222233444444333322221111 222333334444333222
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
..+.+-..-+.+---..+...=.++++...+. .|+.+ .|=++.......+.|+-++..+.+.- +.+...|
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLw---- 413 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLW---- 413 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----
Confidence 11111111122111122233334555555553 34443 23345555667777888888887742 3233333
Q ss_pred HHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHH----HHHCCCCCChhhHHHHHHHhcCCC
Q 048321 184 SSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRH----MMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
-+|++..-++.|.+++++..+. +.+...|.+-...--.+|+.+...++..+ +...|+..+...|..=...|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 4556677788899998888777 67788888777777778888888777654 445688888888888788888888
Q ss_pred chHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLF 333 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (641)
..-.+..+...++..|+... -.+|..-...|.+.+.++-|+.+|... -..+...|......--..|..++...+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888888887776543 356777777788888888888777654 2334556666666666667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 048321 334 FAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIV 411 (641)
Q Consensus 334 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 411 (641)
++.... ++-....+.......-..|++..|..++..+.+.. +.+..+|.+-+........++.|+.+|.+... +..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 777665 22233344444444556677777777777777765 34666777777777777777777777776654 445
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
..|.--+...--.+..++|++++++.++. -|+-. .|..+...+.+.++++.|+..|..-.+.. +-.+..|-.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c----P~~ipLWllL 725 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC----PNSIPLWLLL 725 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC----CCCchHHHHH
Confidence 55655555555567777777777777664 56654 55555556677777777777666554322 2335556666
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--------------------
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH-------------------- 548 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-------------------- 548 (641)
.++=.+.|.+-.|..++++.. .+.|...|...+..-.+.|+.++|..++.++++--|.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 666667777777777777654 3445666777777777777777776666555443222
Q ss_pred ----------CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 549 ----------SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 549 ----------~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|+.....++.++....+++.|++.|......
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2344445566666666666666666655543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=7.8e-12 Score=122.81 Aligned_cols=465 Identities=11% Similarity=0.063 Sum_probs=351.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH----HHcCCCChhHHHHHHHHhHcC
Q 048321 114 VGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI----HIGVDADVSVCNTWISSYAKC 189 (641)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~ 189 (641)
-+|++..-++.|..+++..++. ++-+...|.+..+.=-..|..+....+.+..+ ..|+..+..-|-.=...+-..
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3455556677888888877764 66667777777776677777777777765543 346666666666666666666
Q ss_pred CChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHH
Q 048321 190 DDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRL 265 (641)
Q Consensus 190 g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 265 (641)
|..-.+..+....... ..--.+|+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..+.-..
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 7666666666554432 122456777778888888888888888877663 22334445555554456677888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 048321 266 VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEL 342 (641)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 342 (641)
+++.++..- +.....|-....-+...|++..|+.++... ...+...|-+-+.....+.+++.|..+|.+.... .
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 888887764 445566677777788889999999888776 2335567888888889999999999999988764 5
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIA 419 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 419 (641)
|+...|.--+..---.++.++|.+++++.++. ++.-...|..+.+.+-..++++.|.+.|..-.+ | .+..|-.+..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 66655555555555578899999999888875 355567888889999999999999999887665 3 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK 499 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 499 (641)
.--+.|....|..+|++.+-.+ +-|...|...+..=.+.|+.++|..+..++.++.+ .+...|..-|.+..+.++
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp----~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP----SSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccchhHHHHHHhccCccc
Confidence 8888899999999999998873 33456888889999999999999999999887654 677888888999989888
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
-..+.+.+++-. .|+.+..+....+.....++.|..-|.++++++|++-.+|..+-..+.+.|.-++-.+++......
T Consensus 803 kTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 803 KTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred chHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 888777777754 466677777788888899999999999999999999999999999999999999999998877654
Q ss_pred CCccCCceeEEEEC
Q 048321 580 QVKKFPGQSLFHIN 593 (641)
Q Consensus 580 ~~~~~~~~s~~~~~ 593 (641)
. +..|..|..+.
T Consensus 881 E--P~hG~~W~avS 892 (913)
T KOG0495|consen 881 E--PTHGELWQAVS 892 (913)
T ss_pred C--CCCCcHHHHHh
Confidence 3 34677776653
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.3e-13 Score=128.42 Aligned_cols=326 Identities=15% Similarity=0.118 Sum_probs=213.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh--ccCChhHH-HHHHHHHHHHcCCCChhHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAI--HAKHLSLL-KSVHSFGIHIGVDADVSVCNT 181 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 181 (641)
.+.+=|.|+.. ...|....+.-+|+.|...|+......-..+++.-+ ...++--+ .+.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 45567777764 457889999999999999997777666555554432 22222211 1222233333322 22222
Q ss_pred HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 182 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
+.|++.+ -+|+..+ .+..+|..||.++++--..+.|.+++++......+.+..+||.+|.+.+ +.
T Consensus 191 ------K~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~ 255 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS 255 (625)
T ss_pred ------ccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh
Confidence 4454443 4455444 5788999999999999999999999999999888999999999998754 34
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 048321 262 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 341 (641)
..+.+..+|+...+.||..++|+++++..+.|+++.|.+. |++++.+|++.|+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGV 308 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGV 308 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCC
Confidence 4488999999999999999999999999999999887653 4455556666666
Q ss_pred CCCHHHHHHHHHHhcCcCchHH-HHHHHHHHHH----cCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 048321 342 LPDLVTVLSMISGCGQSGALEL-GKWFDNYACS----GGLKD----NVMVCNALIDMYSKCGSIGDARELFYALPE---- 408 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 408 (641)
.|...+|..+|..+++.++..+ +..+..++.. ..+.| |...+..-++.+....+.+-|.++-.-...
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 6666666666666555554422 2222222221 12221 333444445555555555555555443322
Q ss_pred ----C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 409 ----K---IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 409 ----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
+ ..+-|..+....|+....+.-+..|+.|.-.-+-|+..+...++.|....|.++-..+++..++ .+|
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~g 463 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYG 463 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhh
Confidence 1 1134555666667777777777777777766666777777777777777777777777777776 344
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=5.2e-16 Score=149.50 Aligned_cols=255 Identities=18% Similarity=0.112 Sum_probs=112.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMI-SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS 395 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 395 (641)
...+.+.|++++|++++++.......|+...|..++ ..+...++.+.|...++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445566677777777775444332234444444333 34445667777777777777654 3355566667766 67888
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048321 396 IGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 396 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
+++|.+++....+ ++...+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888876644 456677888888899999999999999987643 2345556777778889999999999999999
Q ss_pred HhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 473 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+..+ .+......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++++..|+|+
T Consensus 173 l~~~P----~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 173 LELDP----DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH-T----T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHcCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 96432 347788899999999999999888887765 345777899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.....+++++...|+.++|.+++++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987754
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=3.6e-11 Score=122.98 Aligned_cols=473 Identities=12% Similarity=0.024 Sum_probs=298.3
Q ss_pred CCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 048321 88 CDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 164 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 164 (641)
.|+.++|.+++.++. +++...|-+|...|-+.|+.++++..+-..-.. .+-|...|..+-.-..+.|.+++|.-.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 389999999999876 346788999999999999999998877665543 2445577888888889999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCC-C-ch----hHHHHHHHHhcCCCchHHHHHHHHHHHC
Q 048321 165 SFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLR-T-VV----SWNSMVAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~-~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
.++++... ++....---...|-+.|+...|..-|.++....| . .. .--..+..+...++-+.|++.++.....
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99998753 3444555567889999999999999988877522 1 11 1222355677777778888888877663
Q ss_pred -CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHh---------------------------CCCCchhH-HHHHHHHH
Q 048321 239 -GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY---------------------------GFDLDVSV-INTLISMY 289 (641)
Q Consensus 239 -g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~~~ 289 (641)
+-..+...++.++..+.....++.+.......... ++.++..+ ...+--.-
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23355566777777777777777776666555541 12233333 11111122
Q ss_pred HhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHH
Q 048321 290 SKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGK 365 (641)
Q Consensus 290 ~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 365 (641)
.+.+...+++..|-.- +..++..|..+..+|...|++.+|+.+|..+.....--+...|..+..++...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 2333444444433221 222445678888899999999999999999887655556677888888888999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh------------HHHHHHHHHHHcCChHHHHHH
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVV------------SWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~ 433 (641)
+.++.++... +.+..+--.|...|.+.|+.++|.+.+..+..||.. .--.....+.+.|+.++=+.+
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988765 555667777888889999999999999987765521 112223445566776665544
Q ss_pred HHHHHHcC-----CCC-----------------ChhhHHHHHHHHhccCChHHHHHHH-----HHHHhhhCCCCCCC--h
Q 048321 434 FHQLMELD-----LRP-----------------NRVTFLAVLQACTHTGFLEKGWAIS-----IIQYDDKGISYNPE--L 484 (641)
Q Consensus 434 ~~~m~~~g-----~~p-----------------~~~t~~~ll~~~~~~g~~~~a~~~~-----~~~~~~~~~~~~p~--~ 484 (641)
-..|...+ +-| ...+...+..+-.+.++......-. .......+ +.-+ -
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~--Lsiddwf 626 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG--LSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc--CcHHHHH
Confidence 44443211 001 1112222222322222211111000 11111223 2222 2
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC-----CCCCh-h-HH-HHHHHHHHHcCCHHHHHHHHHHhHcc-----CCCCCc
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDA-G-IW-GTLLCACKIHLNIEIGEYVAYCLFKL-----EPHSAA 551 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~-~-~~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 551 (641)
..+.-++..+.+.|++++|+.++..+. ..++. . .+ ...+.++...+++..|....+.++.. +|..+.
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 455667777777777777777776654 22221 1 22 23344556667777777777766654 554444
Q ss_pred cHHHHHHHHHhcCC
Q 048321 552 PYVEMANKYALGGR 565 (641)
Q Consensus 552 ~~~~l~~~~~~~g~ 565 (641)
.|.+..+...+.|+
T Consensus 707 l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444555444
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.8e-13 Score=128.30 Aligned_cols=428 Identities=11% Similarity=0.067 Sum_probs=295.6
Q ss_pred hHHHH---HHHHhccCChhHHHHHHHHHHHHcCCCChhHH-HHHHHHhHcCCChhHHHHHHhcccCCCCC------chhH
Q 048321 143 TVMGL---TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVC-NTWISSYAKCDDLKMAELVFCGIEERLRT------VVSW 212 (641)
Q Consensus 143 t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~ 212 (641)
||+.+ ..-|.......+|...++.+++...-|+.... ..+.+.|.+...+..|+++++......|+ +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45444 44455566678888899999888877776543 34557788999999999998776654333 3445
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCC------------Cchh
Q 048321 213 NSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFD------------LDVS 280 (641)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~ 280 (641)
+.+--.+.+.|+++.|+.-|+...+. .||..+-..|+-++...|+-++.++.|..++..-.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 66666789999999999999998774 488888777777778899999999999999865322 2333
Q ss_pred HHHHHH-----HHHHhcCC--HHHHH----HHHhcCCCCCcc---hHH------------------HHHHHHHhCCChhH
Q 048321 281 VINTLI-----SMYSKCGD--IDSAR----VLFDGICDRTRV---SWT------------------AMISGYAQKGDLDE 328 (641)
Q Consensus 281 ~~~~li-----~~~~~~g~--~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~ 328 (641)
..+.-+ .-.-+..+ -++++ ++..-+..|+-. -|. .-..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 333222 11222111 11111 222222223211 111 11234789999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--HHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 048321 329 ALRLFFAMEAAGELPDLVTVLSMI--SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 406 (641)
Q Consensus 329 A~~~~~~m~~~~~~p~~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 406 (641)
|+++++-+.+..-+.-+..-+.|- .-...-.++..|.++-+..+... .-+....+.-...-...|++++|.+.+++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 999998887654433333322222 22222346677777766665432 222333222233345679999999999999
Q ss_pred CCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC
Q 048321 407 PEKIVVSWTTMIA---GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE 483 (641)
Q Consensus 407 ~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~ 483 (641)
...|..+-.+|.+ .+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++-+.... ++.|
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl----ip~d 591 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----IPND 591 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----CCCC
Confidence 9888766555543 456789999999999888753 2345567778888999999999999998877642 4466
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhC-C-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSM-P-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
+...+.|.++|-+.|+-..|.+..-+- . ++.+..+..-|...|....-++.++..++++--+.|+.+..-.+++.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 889999999999999999999876554 3 56677777667777777778899999999999999986555666778899
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
+.|+|..|.++++..-.
T Consensus 672 rsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999987654
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=9.7e-12 Score=126.30 Aligned_cols=518 Identities=13% Similarity=0.039 Sum_probs=284.5
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC--------------cCCCChhHHHHHhhccCCCC
Q 048321 40 LLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRD 105 (641)
Q Consensus 40 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~A~~~f~~~~~~~ 105 (641)
.++..|...|+.||..||.+++.-||..|+.+.|- ++..|....+ ...++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888887776 6666654333 1122222222 567
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHH-H---H----HcCCCCChhhHHHHHHHHhccC-C------hhHHHHHHHHHHHH
Q 048321 106 VASWNAMLVGFAQMGFLENVLRLFYN-M---R----LVGIQADFVTVMGLTQAAIHAK-H------LSLLKSVHSFGIHI 170 (641)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~a~~l~~~-m---~----~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~~ 170 (641)
..+|+.|..+|.+.|+... ++..++ | . ..|+.--..-|-..+.+|-..- + ..--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999765 322222 2 1 1232211122222222221110 0 00111223333333
Q ss_pred cC-CCChhHHHH---HHHHhHc-CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChh
Q 048321 171 GV-DADVSVCNT---WISSYAK-CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVT 245 (641)
Q Consensus 171 ~~-~~~~~~~~~---ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (641)
+. .|....++. .++-... ...+++-...-....+ .+++.+|..++.+-..+|+.+.|..++.+|++.|++.+..
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 31 111111111 1222211 1223333333333333 4899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 048321 246 TVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGD 325 (641)
Q Consensus 246 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (641)
-|..++-+ .++...+..+..-|...|+.|+..|+..-+-.+.++|....+....+.-.--....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 88888876 788899999999999999999999999888777776653333222111100111123333333211222
Q ss_pred hh-----HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCHH
Q 048321 326 LD-----EALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK---DNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 326 ~~-----~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 397 (641)
.+ -....+.+..-.|+......|..... ....|.-+...++...+...... .++..+..++
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l---------- 386 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL---------- 386 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH----------
Confidence 11 12222222222344433333433332 23367777777777766542221 1222333333
Q ss_pred HHHHHHhhCCCCChh-HHHHHHHHHHH---------------cCChHHHHHHHHHHHH----cCCCC-------ChhhHH
Q 048321 398 DARELFYALPEKIVV-SWTTMIAGCAL---------------NGEFVEALDLFHQLME----LDLRP-------NRVTFL 450 (641)
Q Consensus 398 ~A~~~~~~~~~~~~~-~~~~li~~~~~---------------~g~~~~A~~~~~~m~~----~g~~p-------~~~t~~ 450 (641)
...|.+...+... .++ .-.+... .-+...+++-+..+.. .-..| =...-+
T Consensus 387 --rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 387 --RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred --HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 3344444332221 111 1111111 1111222221111111 00111 111334
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-----CCCChhHHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAGIWGTLLCA 525 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~ 525 (641)
.++..|++.-+..+++..-+... ..- + | ..|..||+.+....+.++|..+.++.. ..-|..-+..+...
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye-~~l--f-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYE-DLL--F-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH--h-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 45556666655666654433332 211 1 2 578999999999999999999998876 23345567777788
Q ss_pred HHHcCCHHHHHHHHHHhHc---cCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEE
Q 048321 526 CKIHLNIEIGEYVAYCLFK---LEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFH 591 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~ 591 (641)
..+++....+..++++..+ ..|.-......+.+-....|+.+.-.++.+-+..-|+.. .|.-|..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~v 605 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWMV 605 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceEE
Confidence 8888888888888776654 233334455566677777888888888888888777765 3544443
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=2.6e-12 Score=131.06 Aligned_cols=328 Identities=13% Similarity=0.051 Sum_probs=199.2
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 048321 258 EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFF 334 (641)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (641)
|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-.. .+.|...|..+.....+.|.+++|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555554 344455556666666666666655544322 34444556655555566666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhhCCC--
Q 048321 335 AMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN----ALIDMYSKCGSIGDARELFYALPE-- 408 (641)
Q Consensus 335 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~-- 408 (641)
+.++.. +++...+..-...|-+.|+...|..-+.++.....+.|..-.. ..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 655542 2222333333444555566666666555555543222222111 123444445555666666555443
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------------------------CCChhhHHHHHHHHhc
Q 048321 409 ---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL---------------------------RPNRVTFLAVLQACTH 458 (641)
Q Consensus 409 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~~t~~~ll~~~~~ 458 (641)
-+...++.++..|.+...++.|......+..... .++... ..+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1234556666666666666666666666555111 122222 112222333
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCC-CC--ChhHHHHHHHHHHHcCCHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPI-KS--DAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p--~~~~~~~ll~~~~~~g~~~~a 535 (641)
....+....+..... .......-+...|.-+.++|...|++.+|+.+|..+.. ++ +..+|-.+...+...|.+++|
T Consensus 390 L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 333333333333333 22211334577888999999999999999999999872 22 466999999999999999999
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~ 589 (641)
.+.+++++.+.|++..+-+.|+.+|.+.|+.++|.+.++.+...+..+.+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999877555444455544
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=7.3e-12 Score=119.05 Aligned_cols=212 Identities=12% Similarity=0.048 Sum_probs=156.3
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 048321 358 SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
.|+.-.+..-++..++.... +...|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666677777777765422 222355566667777777777777777654 34556666556666667888888888
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C
Q 048321 435 HQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I 512 (641)
Q Consensus 435 ~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 512 (641)
++.+.. .|+. ..|..+-.+..+.+.++++...|+..+++++ ..++.|+.....+...++++.|.+.|+... .
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP----~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP----NCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 888874 5654 3666666677788888888888888887654 567788888888888888888888888754 4
Q ss_pred CCC---------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 513 KSD---------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 513 ~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.|+ +.+-.+++-. +-.+++.+|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222233322 344899999999999999999988999999999999999999999998754
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.4e-10 Score=107.39 Aligned_cols=481 Identities=10% Similarity=0.042 Sum_probs=349.2
Q ss_pred cCCCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHH
Q 048321 86 VKCDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~ 161 (641)
-..+++..|+.+|++.. .++...|---+..=.++.+...|..+++.... +-|-+. .|-..+-.=-..|++..|+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 44577888999999865 45778888888888999999999999999876 345443 2333444445678999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCC
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR 241 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (641)
++|+.-.+ ..|+...|++.|+.=.+-..++.|..+++...-..|++.+|--...-=-++|+...|..+|....+. -
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 99998876 5899999999999999999999999999987766699999999999889999999999999887763 1
Q ss_pred CChhhHHHHHHHh----cCCCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHH--------hcCCC
Q 048321 242 LDVTTVVSLLSSF----VCPEALVQGRLVHSHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLF--------DGICD 307 (641)
Q Consensus 242 p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~ 307 (641)
.|...-..++.++ .+...++.|.-++...+..- +.+ ...|..+...--+.|+.....+.. +.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2333333344444 34567888888888888763 223 456666666666667655444332 23323
Q ss_pred C---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--H-----H---HHHHHHhcCcCchHHHHHHHHHHHHc
Q 048321 308 R---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV--T-----V---LSMISGCGQSGALELGKWFDNYACSG 374 (641)
Q Consensus 308 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t-----~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (641)
. |-.+|-..+..--..|+.+...++|++.+.. ++|-.. . | +..+-.-....+.+.+.++++..++.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 4457777777778889999999999999865 455321 1 1 11122223567889999999999883
Q ss_pred CCCCchhHHHHHHHHH----HhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhh
Q 048321 375 GLKDNVMVCNALIDMY----SKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVT 448 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 448 (641)
++....++.-+--+| .++.++..|.+++..... |...++..-|..-.+.++++....++++.++-+ +-|..+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 354555555554444 578899999999988765 677788888888889999999999999999964 345678
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHH
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACK 527 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~ 527 (641)
+......=...|+.+.|+.+|..++.... +.-....|.+.|+.-...|.++.|..+++.+. ..+-..+|-++...-.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~--ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPA--LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcc--cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhc
Confidence 88888777889999999999999985433 34445678899999999999999999999987 4455568877765433
Q ss_pred -----HcC-----------CHHHHHHHHHHhHc----cCCCC--CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 528 -----IHL-----------NIEIGEYVAYCLFK----LEPHS--AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 528 -----~~g-----------~~~~a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+ +...|..+|+++.. .+|.. ...+..+-+.=...|.-.+...+-..|+.
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 56788888888754 33321 11222233344456766667777666654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=7.2e-12 Score=126.34 Aligned_cols=275 Identities=10% Similarity=0.017 Sum_probs=193.4
Q ss_pred cCCHHHHHHHHhcCCCC--Cc-chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhcCcCchHHHHH
Q 048321 292 CGDIDSARVLFDGICDR--TR-VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVL--SMISGCGQSGALELGKW 366 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 366 (641)
.|+++.|.+.+....+. ++ ..|-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765332 12 22322334446788888888888888764 45543332 22445677788888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 048321 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV-----------VSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 55677888888888888888888888887775211 133334444444455566666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC
Q 048321 436 QLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS 514 (641)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 514 (641)
.+-+. .+.+......+..++...|+.++|..+++...+ .+ |+.... ++......++.+++++.+++.. ..|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~----~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQ----YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC----CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66443 234556777888888999999999999888874 33 554322 2333345588999999888866 445
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 -DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|+....++...|...+++++|.+.++++++..|+ ...+..++.++.+.|+.++|.+.+++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556778888999999999999999999999998 46678899999999999999998886543
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.4e-10 Score=104.81 Aligned_cols=460 Identities=10% Similarity=0.036 Sum_probs=341.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 184 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 184 (641)
+...|---..-=-..+++..|..+|+...... .-+...|..-+..=.+...+..|+.+++.++..-...| ..|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 34445444444455778889999999998754 44555566677777788899999999999988643333 34445556
Q ss_pred HhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHH
Q 048321 185 SYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGR 264 (641)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 264 (641)
+=-..|++..|.++|+.-.+-.|+...|++.|.-=.+-+.++.|..+|+..+- +.|+..+|.--.+.=.+.|+...+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 66778999999999999888789999999999999999999999999999876 4599999988888888999999999
Q ss_pred HHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCC-cchHHHHHHHHHhCCChhHHHHH-----
Q 048321 265 LVHSHGIHY-G-FDLDVSVINTLISMYSKCGDIDSARVLFDG----ICDRT-RVSWTAMISGYAQKGDLDEALRL----- 332 (641)
Q Consensus 265 ~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~----- 332 (641)
.+++..++. | -..+...+.+....-.++..++.|.-+|.- +++.. ...|......--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999998864 2 122345666666666778888999888753 33322 23444444444455654433332
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCch--hHHHHHHH-----HH---HhcCCHHHH
Q 048321 333 ---FFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNV--MVCNALID-----MY---SKCGSIGDA 399 (641)
Q Consensus 333 ---~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-----~~---~~~g~~~~A 399 (641)
|+.+... -+-|-.++.-.+..-...|+.+...++++..+..- +|-. ..|...|- ++ ....+++.+
T Consensus 308 k~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2333333 24566677777777788899999999999998753 4421 12222221 11 346889999
Q ss_pred HHHHhhCCC--C-Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048321 400 RELFYALPE--K-IV----VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 400 ~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
.++|+...+ | .- ..|-.......++.+...|.+++...+ |.-|..-+|...|..=.+.+.++..+.+++..
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999987765 2 22 345555566677889999999998877 45899999999999989999999999999999
Q ss_pred HhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 473 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
++ .+ +-+-.+|.....+-...|+.+.|..+|+-+..+|. ...|.+.+..-...|.++.|..+++++++..+.
T Consensus 464 le-~~---Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 464 LE-FS---PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred Hh-cC---hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 95 33 24577888888888899999999999998875553 457888888888999999999999999998886
Q ss_pred CCccHHHHHHHHH-----hcC-----------CchHHHHHHHHHH
Q 048321 549 SAAPYVEMANKYA-----LGG-----------RWDGVANIRTMMK 577 (641)
Q Consensus 549 ~~~~~~~l~~~~~-----~~g-----------~~~eA~~~~~~m~ 577 (641)
...|...+.--. ..| ....|..+++...
T Consensus 540 -~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 540 -VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred -chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 457777766544 344 5567777777653
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=8.4e-12 Score=125.90 Aligned_cols=224 Identities=14% Similarity=0.016 Sum_probs=130.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchH
Q 048321 286 ISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALE 362 (641)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 362 (641)
...+...|+++.|...++.+. +.+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 445556666666666665552 223445556666666667777777777776665433221 111000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 363 LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..+|..++.......+.+...++++.+++ .++.....+...+...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00111222222223344445555555543 3556666677777777777777777777766
Q ss_pred cCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhH
Q 048321 440 LDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGI 518 (641)
Q Consensus 440 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 518 (641)
. .||.... ++.+....++.+++.+..+...+.++ -|...+.++...+.+.|++++|.+.|+.+. ..|+...
T Consensus 292 ~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P----~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 292 R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG----DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 3 4444211 22233344777777777777765433 445566777777777777777777777765 6677777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+..+...+.+.|+.++|..++++.+.+
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777777777777777777777654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.5e-12 Score=128.80 Aligned_cols=273 Identities=11% Similarity=0.012 Sum_probs=155.8
Q ss_pred CHHHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHcC-C-CCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 294 DIDSARVLFDGICD--RTRV-SWTAMISGYAQKGDLDEALRLFFAMEAAG-E-LPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 294 ~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~-~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
+..+|...|..++. .|+. ....+..+|...+++++|.++|+.+.+.. . .-+..+|.+.+-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45566666666532 1222 23445566777777777777777666532 1 12334555555443221 111111
Q ss_pred -HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 369 -NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 369 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
+.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2222222 445566666766776666777777777666552 3345566655666666666666666666542 34
Q ss_pred Chh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHH
Q 048321 445 NRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWG 520 (641)
Q Consensus 445 ~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~ 520 (641)
... .|..+...|.+.++++.|.-.|+.+.+ +.|. .....++...+.+.|+.|+|+++++++. . +.|+..-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc-----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 333 555555566666677777666666664 3343 4445555566666667777777766654 2 22444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.-+..+...+++++|+..++++.++-|+++..+..+|.+|-+.|+.+.|..-+-.+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455555566666777777766666676666666777777777766666666555544
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.8e-12 Score=126.95 Aligned_cols=245 Identities=11% Similarity=0.024 Sum_probs=176.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048321 325 DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG--LKDNVMVCNALIDMYSKCGSIGDAREL 402 (641)
Q Consensus 325 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (641)
+..+|+.+|.+.... +.-.......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457888888884433 33333555667778888888888888888888742 123566777665444332222211122
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCC
Q 048321 403 FYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYN 481 (641)
Q Consensus 403 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (641)
+-.+....+.+|-++.++|..+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|..++.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~------- 483 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG------- 483 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-------
Confidence 22223345678888888888888888999888888874 56 445777777777778888888888887753
Q ss_pred CChhHHHH---HHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 482 PELDHYSC---MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 482 p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
.+..+|++ ++-.|.+.++++.|+-.|+++. ..| +.+....+...+.+.|+.++|++++++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 55556655 4566888888898888888876 444 566667777778888888899999999988888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+.++...++++||...++++++-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 88888889999998888888764
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.1e-10 Score=104.80 Aligned_cols=159 Identities=10% Similarity=-0.015 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
|...+.+-|.-.++.++|...|++..+.+ |.. ..|+.+.+-|....+...|.+-++.+++.+ +.|-..|-.|.++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 44444444555555556666665555432 222 234444444555555555555555555544 44555555555566
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHH
Q 048321 391 SKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWA 467 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 467 (641)
.-.+...-|+-.|++... .|...|.+|..+|.+.++.++|++.|.+....| ..+...+..+...+.+.++.++|.+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555555555433 355556666666655566666666665555544 3344555555555555555555555
Q ss_pred HHHHHHh
Q 048321 468 ISIIQYD 474 (641)
Q Consensus 468 ~~~~~~~ 474 (641)
.|+..++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=3.9e-11 Score=121.79 Aligned_cols=126 Identities=10% Similarity=-0.053 Sum_probs=72.4
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH---HHHHHHHhhccCChHHHHHHHHhCC-CCC-Ch--h
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH---YSCMADLLGRKGKLKEALDFVQSMP-IKS-DA--G 517 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~--~ 517 (641)
+...+..+...+...|+.++|.+.++...+.. |+... ...........++.+.+.+.++... ..| |+ .
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 33344444455555555555555555555322 22111 1111111122345555666665543 333 33 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAY--CLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
...++.+.|.+.|++++|.+.++ .+++..|+ +..+..++.++.+.|+.++|.+++++.
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677777778888888888888 56667776 344667888888888888888877764
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.9e-10 Score=108.99 Aligned_cols=257 Identities=14% Similarity=0.000 Sum_probs=202.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
....-+...+++.+..++++...+.. ++....+..-|..+...|+-.+-..+-..+++.- |....+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 33445667889999999999988753 3444444444556666776655555555555543 667889999998899999
Q ss_pred CHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 048321 395 SIGDARELFYALPEKI---VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 395 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
+..+|++.|.+...-| ...|-.....|+-.|..++|+..+..+-+. ++-....+..+..-|.+.++.+.|.++|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999877633 368999999999999999999999988774 222333555556678899999999999999
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-----C---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 048321 472 QYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-----I---KS-DAGIWGTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
+....+ .|+...+-+.-+.-..+.+.+|..+|+... . ++ =..+|+.|..+|++.+.+++|+..++++
T Consensus 406 A~ai~P----~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 406 ALAIAP----SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHhcCC----CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 886433 456667777777778899999999998854 1 11 2346888999999999999999999999
Q ss_pred HccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 543 FKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+.|.++.+|..+|-+|.-.|+++.|.+.+.+..-
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1.3e-10 Score=118.03 Aligned_cols=286 Identities=10% Similarity=-0.038 Sum_probs=165.3
Q ss_pred cCCCchHHHHHHHHHHHCCCCCChhh-HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048321 221 YGDKFDDSLNFYRHMMYNGFRLDVTT-VVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 299 (641)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 299 (641)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+...+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666555443 233222 22223444445555555555555543321111122222344444445555554
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc
Q 048321 300 VLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN 379 (641)
Q Consensus 300 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (641)
.. ++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+.
T Consensus 174 ~~-------------------------------l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 174 HG-------------------------------VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HH-------------------------------HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 44 44444432 11222333444444444444444444444444432221
Q ss_pred hhH-------HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH
Q 048321 380 VMV-------CNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF 449 (641)
Q Consensus 380 ~~~-------~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 449 (641)
... +..++..-......+...+.++..+. .+...+..++..+...|+.++|.+++++..+. .||....
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~ 299 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAI 299 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccc
Confidence 111 11111111222234455555655554 47788888889999999999999999999886 4555421
Q ss_pred ---HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh--C-CCCCChhHHHHHH
Q 048321 450 ---LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS--M-PIKSDAGIWGTLL 523 (641)
Q Consensus 450 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll 523 (641)
..........++.+.+.+.++...+..+ -.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p--~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD--DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 1112233445778888888888886544 333325667889999999999999999994 3 3678888888999
Q ss_pred HHHHHcCCHHHHHHHHHHhHc
Q 048321 524 CACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~ 544 (641)
..+.+.|+.++|.+++++.+.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.8e-10 Score=106.94 Aligned_cols=316 Identities=11% Similarity=0.019 Sum_probs=219.2
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc-hHHHHHHHHHhCCChhHHH
Q 048321 252 SSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRV-SWTAMISGYAQKGDLDEAL 330 (641)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 330 (641)
-.+...|....|...+...+..- +-....|..|... ..+.+.+..+-...+..+.. .--.+..++-...+.++++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666665554321 2233333333322 23444444333333222111 1112344555566777787
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHH-HHHHHhhCC
Q 048321 331 RLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDNVMVCNALIDMYSKCGSIGD-ARELFYALP 407 (641)
Q Consensus 331 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 407 (641)
.-.......|..-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-..+.++.- |..++ .+.
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id 326 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID 326 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc
Confidence 7777777777655554444444455667788999999999888631 1255666665533322222221 22222 233
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH
Q 048321 408 EKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486 (641)
Q Consensus 408 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~ 486 (641)
+--+.|..++.+-|.-.++.++|...|++..+. .|... .|+.+..-|....+...|.+-+..+++..+ -|-..
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p----~DyRA 400 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP----RDYRA 400 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc----hhHHH
Confidence 333456666777888889999999999999986 56655 566666689999999999999999996433 56889
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
|-.|+.+|.-.+...-|+-+|++.. .+| |+..|.+|...|.+.++.++|++.+++++.....+..+|..|+++|-+.+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 555 78899999999999999999999999999998878899999999999999
Q ss_pred CchHHHHHHHHHHh
Q 048321 565 RWDGVANIRTMMKR 578 (641)
Q Consensus 565 ~~~eA~~~~~~m~~ 578 (641)
+.++|...+++-.+
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999887655
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=2.3e-11 Score=123.61 Aligned_cols=437 Identities=11% Similarity=0.032 Sum_probs=234.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCC
Q 048321 127 RLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERL 206 (641)
Q Consensus 127 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 206 (641)
.++-.|...|+.|+.+||..++.-|+..|+++.|- +|..|.-...+....+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-- 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-- 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C--
Confidence 45566677777777777777777777777777777 7777776666667777777777777777766665 3
Q ss_pred CCchhHHHHHHHHhcCCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhcCCC-c------hHHHHHHHHHHH
Q 048321 207 RTVVSWNSMVAGCTYGDKFDDSLNFYRH-MM-------YNGFRLDVTTVVSLLSSFVCPE-A------LVQGRLVHSHGI 271 (641)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~ 271 (641)
|.+.+|..|..+|.+.|+... ++..++ |. ..|+.--...+-..+++|-..- + ..--+.++...+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777544 222222 11 1232222222222222221110 0 001112222333
Q ss_pred HhCC-CCchhHHHH---HHHHHH-hcCCHHHHHHHHhcCC-CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 048321 272 HYGF-DLDVSVINT---LISMYS-KCGDIDSARVLFDGIC-DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL 345 (641)
Q Consensus 272 ~~g~-~~~~~~~~~---li~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 345 (641)
+.+. .|...-++. .++-.. ....+++-........ .+++.++.+++..-..+|+.+.|..++.+|.+.|+..+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3221 111110110 111111 1122333333333333 367777888887777788888888888888888877777
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH------------------------H
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR------------------------E 401 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~------------------------~ 401 (641)
.-|..++-+ .++...+..+..-|...|+.|+..|+...+-.+.++|....+. +
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 777666655 6677777777777777888887777776655555543322111 1
Q ss_pred HHhh---------CCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCChh-hHHHHHHHHhccCCh
Q 048321 402 LFYA---------LPE-------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL--DLRPNRV-TFLAVLQACTHTGFL 462 (641)
Q Consensus 402 ~~~~---------~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~-t~~~ll~~~~~~g~~ 462 (641)
.++. .++ ....+|... .-...+|+.++..++-..|..- ...|+.+ .|..++.-|.+.-..
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 1111 000 011233322 2234467777777777777642 2233333 454444433321100
Q ss_pred ---------HHHHHH----------HHHHHhhhC----------------CCCCC-------ChhHHHHHHHHhhccCCh
Q 048321 463 ---------EKGWAI----------SIIQYDDKG----------------ISYNP-------ELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 463 ---------~~a~~~----------~~~~~~~~~----------------~~~~p-------~~~~~~~l~~~~~~~g~~ 500 (641)
.++.+. -+.+....+ +.+.| -...-+.++..+.+.-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 011110 000000000 00001 011123344444454455
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 501 KEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 501 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.+++...+.....--+..|..|+.-|..+...+.|.....+....+.. +..-+..+.+++.+.+...++.++.+++.
T Consensus 476 lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~k 555 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDK 555 (1088)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 555543333221111256788888888999999888888776554322 34557889999999999999999999987
Q ss_pred h
Q 048321 578 R 578 (641)
Q Consensus 578 ~ 578 (641)
+
T Consensus 556 s 556 (1088)
T KOG4318|consen 556 S 556 (1088)
T ss_pred H
Confidence 6
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=3.7e-13 Score=129.67 Aligned_cols=252 Identities=17% Similarity=0.104 Sum_probs=66.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHH-HHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048321 216 VAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSL-LSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 294 (641)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 294 (641)
...+.+.|++++|++++++.......|+...|..+ ...+-..++++.|...++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 34444455555555555433222212333333222 222333444555555555554443 2234444455554 45566
Q ss_pred HHHHHHHHhcC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 295 IDSARVLFDGI--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG-ELPDLVTVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 295 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
+++|.++++.. ..++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655544 22344455556666666666666666666655422 2233444444445555555666666666555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Chh
Q 048321 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP-NRV 447 (641)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 447 (641)
++.. +.+..+.+.++..+...|+.+++.++++...+ .|...|..+..++...|+.++|+..|++.... .| |..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 5543 33444555555555555555554444433322 33444555555555555555555555555543 23 333
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
+...+..++...|+.++|.++..++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444555555555555555554443
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=2.7e-11 Score=113.74 Aligned_cols=198 Identities=12% Similarity=0.000 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888999999999999999987654 346788888999999999999999999999863 334457777788
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|.+.++.+..... .......+..+...+...|++++|...+++.. ..| +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL--YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 89999999999999999985332 23345677888899999999999999999876 334 466788888999999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999888888888999999999999999999887764
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=9.4e-08 Score=94.64 Aligned_cols=509 Identities=11% Similarity=0.081 Sum_probs=282.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhh
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQN-DIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFD 99 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~ 99 (641)
.|-.-+..+.++|+.-.....|+..++. .+.-....|...+...... +-++-+.++++
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~---------------------~lPets~rvyr 162 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH---------------------GLPETSIRVYR 162 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC---------------------CChHHHHHHHH
Confidence 5777777777777777777777776542 3333444566666555443 34455555555
Q ss_pred ccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcC-
Q 048321 100 EMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVG------IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV- 172 (641)
Q Consensus 100 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 172 (641)
+-.+-++..-+--|..++..+++++|-+.+....... .+.+...|..+....++..+.-...++ +.+++.|+
T Consensus 163 RYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~ 241 (835)
T KOG2047|consen 163 RYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIR 241 (835)
T ss_pred HHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcc
Confidence 5444444556666777777777777777776654321 133334455555555444332222221 22233332
Q ss_pred -CCC--hhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcC----------------CC------chH
Q 048321 173 -DAD--VSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYG----------------DK------FDD 227 (641)
Q Consensus 173 -~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~------~~~ 227 (641)
-+| ...|++|.+-|.+.|.++.|..+|++......++.-++.+-.+|++- |+ ++-
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 223 35678888888888888888888877655322333333333333221 11 122
Q ss_pred HHHHHHHHHHCCC-----------CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHh
Q 048321 228 SLNFYRHMMYNGF-----------RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFD-----LDVSVINTLISMYSK 291 (641)
Q Consensus 228 A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~ 291 (641)
.+.-|+.+...+. +-+..++..-.. ...|+..+-...+.++++.--+ .-...|..+.+.|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 2333444433221 011122222211 2346677777778877764211 123578889999999
Q ss_pred cCCHHHHHHHHhcCCCCCcc-------hHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----------C-------CHHH
Q 048321 292 CGDIDSARVLFDGICDRTRV-------SWTAMISGYAQKGDLDEALRLFFAMEAAGEL----------P-------DLVT 347 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p-------~~~t 347 (641)
.|+++.|+.+|++..+-+-. +|..-...-.+..+++.|+++++.....--. | +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 99999999999988543322 4555555566778888999888776532111 1 1122
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCh-hHHHHHHHHHH
Q 048321 348 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KIV-VSWTTMIAGCA 422 (641)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~ 422 (641)
|+..+..--..|-++..+.+++.+++..+... .+.-.....+-...-++++.+++++-.. |++ ..|+.-+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 44444444556778888889999988665332 2222233334456668899999987654 554 47777766655
Q ss_pred Hc---CChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHH--
Q 048321 423 LN---GEFVEALDLFHQLMELDLRPNRVTFLAVLQ--ACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADL-- 493 (641)
Q Consensus 423 ~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~-- 493 (641)
+. -..+.|..+|++.++ |.+|...-+..|+- -=...|....|..+++++... +++. ...|+..|.-
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~----v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA----VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHH
Confidence 42 367899999999998 66776653333332 223457778888888876532 2222 3445555422
Q ss_pred --hh---ccCChHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHhHcc-CCC-CCccHHHHHHHHHhc
Q 048321 494 --LG---RKGKLKEALDFVQSMPIKSDAGI---WGTLLCACKIHLNIEIGEYVAYCLFKL-EPH-SAAPYVEMANKYALG 563 (641)
Q Consensus 494 --~~---~~g~~~~A~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~ 563 (641)
|+ ..+-+++|++.+ ||..+ .......-.+.|..+.|..++...-++ +|. ++..|...-+-=.+.
T Consensus 634 e~yGv~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHhCCcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 11 111233333332 22211 112223334556666666666555544 332 344555555555555
Q ss_pred CC
Q 048321 564 GR 565 (641)
Q Consensus 564 g~ 565 (641)
|+
T Consensus 708 Gn 709 (835)
T KOG2047|consen 708 GN 709 (835)
T ss_pred CC
Confidence 55
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.8e-09 Score=98.14 Aligned_cols=301 Identities=11% Similarity=-0.012 Sum_probs=212.1
Q ss_pred CChhhHHHHHHHhc--CCCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH---
Q 048321 242 LDVTTVVSLLSSFV--CPEALVQGRLVHSHGIHY-GFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTA--- 315 (641)
Q Consensus 242 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 315 (641)
|+..+...-+.+++ -.++-..+.+.+-.+... -++.|+.....+.++|...|+.++|...|++...-|+.+...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 33344443444333 234444444444444433 367788899999999999999999999999875444433322
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS 395 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 395 (641)
..-.+.+.|+.+....+...+.... +-....|..-....-..++++.|..+-+..++.. +.+...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334567888888888887776532 1222223223333445678888888888887755 3344455555667778899
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHh-ccCChHHHHHHHH
Q 048321 396 IGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL-QACT-HTGFLEKGWAISI 470 (641)
Q Consensus 396 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~ 470 (641)
.++|.-.|+.... -+..+|.-|+..|...|++.+|..+-+..... +..+..+...+. ..|. ....-++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987654 37789999999999999999999888777664 233444554442 2332 2334578888888
Q ss_pred HHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 471 IQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 471 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
...+ +.|+ ....+.+..++.+.|+.++++.++++.. ..||....+.|...+...+.+++|...|..++.++|+
T Consensus 429 k~L~-----~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 429 KSLK-----INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hhhc-----cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 7774 5566 5667788899999999999999999866 7889999999999999999999999999999999998
Q ss_pred CC
Q 048321 549 SA 550 (641)
Q Consensus 549 ~~ 550 (641)
+-
T Consensus 504 ~~ 505 (564)
T KOG1174|consen 504 SK 505 (564)
T ss_pred ch
Confidence 63
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-08 Score=103.11 Aligned_cols=399 Identities=12% Similarity=0.022 Sum_probs=218.6
Q ss_pred CCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHH
Q 048321 173 DADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLL 251 (641)
Q Consensus 173 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 251 (641)
.-|..+|..|.-+..++|+++.+.+.|++.... ......|+.+-..|...|.-..|+.+++.-....-.|+..+-..+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 345566666666666667777666666665443 3345556666666666666666666666554433223333322222
Q ss_pred -HHhc-CCCchHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcC-----------CHHHHHHHHhcCCC---CCcc
Q 048321 252 -SSFV-CPEALVQGRLVHSHGIHY--GF--DLDVSVINTLISMYSKCG-----------DIDSARVLFDGICD---RTRV 311 (641)
Q Consensus 252 -~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~---~~~~ 311 (641)
..|. +.+..+++..+-..+++. +. ...+..|-.+.-+|...- ...++.+.+++..+ .|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 2222 345555555555555541 11 112233333433333211 11233344444311 1222
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 391 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 391 (641)
..--+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- ..|......-+..-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhh
Confidence 2112222344555666666666666665445555555555555556666666666665554311 000000000011111
Q ss_pred hcCCHHHHHHHHh--------------------------hCCC-----CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 392 KCGSIGDARELFY--------------------------ALPE-----KI-VVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 392 ~~g~~~~A~~~~~--------------------------~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
.-++.++|..... .+.- .+ +.++..+..-....+ ..+..-.. +..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCc
Confidence 1233333322221 1110 01 122222222111111 11100000 222
Q ss_pred cCCCCChh--------hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 440 LDLRPNRV--------TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 440 ~g~~p~~~--------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..+.|+.. .+......+...+..++|+..+.+..... .-....|.-.+..+...|.++||.+.|....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID----PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22223322 23344557788888899987777776432 2446667777788999999999999998876
Q ss_pred -CCCC-hhHHHHHHHHHHHcCCHHHHHH--HHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 512 -IKSD-AGIWGTLLCACKIHLNIEIGEY--VAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 512 -~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..|+ +.+..++...+...|+...|.. ++..+++++|.++++|..+|.++.+.|+.++|.+-|....+-
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6665 5588999999999999888888 999999999999999999999999999999999999887553
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.2e-09 Score=104.59 Aligned_cols=282 Identities=8% Similarity=-0.013 Sum_probs=208.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048321 275 FDLDVSVINTLISMYSKCGDIDSARVLFDGICDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSM 351 (641)
Q Consensus 275 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 351 (641)
+..++.+.....+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.+|.+. .+-.+.+|.++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3556667777777788889999999998887444 4445666677888888888888888888775 23345788888
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChH
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 428 (641)
.--|...|+.++|++++....... +.-...|-.+...|+-.|.-++|...+....+ + ....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 777778899999999998876543 22345788888889888988888877765443 1 1112222334577788999
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC----ChhHHHHHHHHhhccCChHHH
Q 048321 429 EALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP----ELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A 503 (641)
.|.+.|.+.... .|+. ...+-+.-...+.+.+.+|..+|+..+..-. .+.+ -..+++.|+.+|.+.+++++|
T Consensus 398 LAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik-~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK-SVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh-hccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999988864 5654 4566555555667889999999988773211 0111 234578888999999999999
Q ss_pred HHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 504 LDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 504 ~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
+..++... .+.|..++.++.-.+...|+++.|...+.+++.+.|+|..+-.+|..+..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999976 45578899999999999999999999999999999998666666665443
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=4e-09 Score=98.73 Aligned_cols=301 Identities=14% Similarity=0.035 Sum_probs=205.1
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHc
Q 048321 111 AMLVGFAQ--MGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAK 188 (641)
Q Consensus 111 ~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 188 (641)
.+..+..+ .|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++.+..-.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 688999998888877665332 334666667777888888888888888876555666777777788888
Q ss_pred CCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHH
Q 048321 189 CDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
.|+.+.|..-.+++.+. +.++........+|.+.|++.+...++.+|.+.|.--|+.. .++
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-
Confidence 88888888888777766 56778888888888889999888888888888776333221 100
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 048321 268 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344 (641)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 344 (641)
...+|+.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 11334445554444455555555666663 23455666777888888999999998888888777666
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 048321 345 LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCA 422 (641)
Q Consensus 345 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 422 (641)
.. .+-.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+...+ ++..+|+.+..++.
T Consensus 298 L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 298 LC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred HH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 22 2234566666666555555554432 34446777777777888888888777776554 67777777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC
Q 048321 423 LNGEFVEALDLFHQLMELDLRPN 445 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~ 445 (641)
+.|+..+|.+.+++....-.+|+
T Consensus 373 ~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 373 QLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HcCChHHHHHHHHHHHHHhcCCC
Confidence 77777777777776664333333
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.4e-09 Score=100.54 Aligned_cols=410 Identities=11% Similarity=-0.057 Sum_probs=262.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC-hhHHHHHHHH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD-VSVCNTWISS 185 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 185 (641)
.+-..-.-|.++|.+++|++.|.+.++ ..|| +..|.....+|...|+|+.+.+--...++. .|+ +..+..-.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 344556678889999999999999988 4788 666777788888999999988877777663 344 2345555577
Q ss_pred hHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHH--------HHH-CC--CCCChhhHHHHHHHh
Q 048321 186 YAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRH--------MMY-NG--FRLDVTTVVSLLSSF 254 (641)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~g--~~p~~~t~~~ll~~~ 254 (641)
+-..|++++|+.= +|-.++..++....-.--+.+++++ -.. .+ +.|+.....+.+..+
T Consensus 193 ~E~lg~~~eal~D-----------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 193 HEQLGKFDEALFD-----------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHhhccHHHHHHh-----------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 7778888877532 1222333333333222223333322 111 11 334544444444443
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhcC-------CCCC---c------chHHHHH
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK-CGDIDSARVLFDGI-------CDRT---R------VSWTAMI 317 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~~---~------~~~~~li 317 (641)
-..-... +...+-..|...-..+=..+.. ...+..|...+.+- ...+ . .+...-.
T Consensus 262 ~~~~~~~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 262 HADPKPL--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ccccccc--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 2110000 0000000011111111111111 01222232222211 1111 1 1122222
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
.-+.-.|+.-.|..-|+..+.....++.. |..+...|....+.++....|....+.+ +-++.+|.--.+++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 23455788999999999998875544443 6667778999999999999999999876 557778888888888899999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 398 DARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 398 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
+|..-|++... .++..|-.+..+..+.+++++++..|++..++ -|+. ..|+.....+...+++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999876 35677777878888899999999999999987 5655 488888999999999999999999998
Q ss_pred hhhCC----CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 474 DDKGI----SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 474 ~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+-.+. .+.+.+..--+++-+- -.+++..|++++++.. ..| ....+-+|...-.+.|+.++|+++|++...+
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 63221 0011111222222222 3489999999999976 555 4558889999999999999999999998765
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.6e-08 Score=90.53 Aligned_cols=452 Identities=12% Similarity=0.083 Sum_probs=254.6
Q ss_pred CCChhHHHHHhhccCC------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 048321 88 CDRLDCAYKIFDEMAV------RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 161 (641)
.+++..|+.+++--.. .++..| +..++.+.|++++|+..|.-+.+.. .|+...+..+..+..-.|.+.+|+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 4566666666654321 122222 2334566777777777777766643 455555555555555566667766
Q ss_pred HHHHHHHHHcCCCChhHHHH-HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 162 SVHSFGIHIGVDADVSVCNT-WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
++-... |+....+. |.+...+.++-++-..+-+.+.. ...---+|.....-.-.+.+|+++|......+
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 665443 33333333 34555556665555555444433 11222233333333345677888887776543
Q ss_pred CCChhhHHHHHHH-hcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHhcCCCCCcchHHH
Q 048321 241 RLDVTTVVSLLSS-FVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK--CGDIDSA--RVLFDGICDRTRVSWTA 315 (641)
Q Consensus 241 ~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A--~~~~~~~~~~~~~~~~~ 315 (641)
|+-...+.-+.. |.+..-++.+.+++.--++. ++.++...|.......+ .|+..++ ..+-+.... .| .
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~ 254 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-P 254 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-h
Confidence 454555444433 34555566666666555443 23333444433332222 2332222 112221111 11 1
Q ss_pred HHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH-
Q 048321 316 MISGYAQK-----GDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM- 389 (641)
Q Consensus 316 li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 389 (641)
.+.-.++. ..-+.|++++-.+.+. .|.. -..++--+.+.+++.+|..+...+.- ..|...+...++.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 12222222 2346677776665542 3332 22345567888999988877665421 12333333333322
Q ss_pred ----HHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 048321 390 ----YSKCGSIGDARELFYALPEK-----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTG 460 (641)
Q Consensus 390 ----~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 460 (641)
......+.-|...|+-.-.. .+.--.+|.+.+.-..++++.+..++....-= .-|...-..+..+.+..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhc
Confidence 22223456677777765442 23345667777777788999999999888753 333333345678899999
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHH-HHHHHcCCHHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLL-CACKIHLNIEIGEYVA 539 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~ 539 (641)
.+.+|.++|-.+.. .. ++.+......|..+|.++++.+-|++++-++..+.+..+...++ .-|.+.+.+--|-++|
T Consensus 408 ny~eaEelf~~is~-~~--ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISG-PE--IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcC-hh--hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999987652 22 33333334566799999999999999999887655666555554 5699999999999999
Q ss_pred HHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+-.++|. |+.|. |+--...-+++.+...
T Consensus 485 d~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 485 DELEILDPT-PENWE---------GKRGACAGLFRQLANH 514 (557)
T ss_pred hHHHccCCC-ccccC---------CccchHHHHHHHHHcC
Confidence 999999996 66554 3333444455555443
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=2e-07 Score=92.40 Aligned_cols=497 Identities=11% Similarity=0.075 Sum_probs=306.3
Q ss_pred ccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC--cCCC
Q 048321 12 RIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF--VKCD 89 (641)
Q Consensus 12 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~--~~~~ 89 (641)
.+|..-....|...+...-..+-++-++.+|++-++- .| ..-.--+..++.+++++++.+..+.++...- ++.|
T Consensus 131 aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~g 206 (835)
T KOG2047|consen 131 ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKG 206 (835)
T ss_pred hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcc
Confidence 3554333336999999999999999999999998873 33 3356667777888888888888877764322 1111
Q ss_pred -----ChhHHHHHhhccC----------------C--CC--cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 048321 90 -----RLDCAYKIFDEMA----------------V--RD--VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTV 144 (641)
Q Consensus 90 -----~~~~A~~~f~~~~----------------~--~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~ 144 (641)
-+.+-..+..+.+ . +| ...|++|...|.+.|.+++|.++|++.... ..+..-|
T Consensus 207 kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDF 284 (835)
T KOG2047|consen 207 KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDF 284 (835)
T ss_pred cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhH
Confidence 1122222222211 1 11 236888888888888888888888877653 3344456
Q ss_pred HHHHHHHhccCChhHHHHHHHHHH-HHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccC-------------CCCCch
Q 048321 145 MGLTQAAIHAKHLSLLKSVHSFGI-HIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEE-------------RLRTVV 210 (641)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~ 210 (641)
..+..+|+.-.....+..+- ... +.+-+-+.. +++-...-|+.+.. .+.++.
T Consensus 285 t~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 66666665432211111111 000 001111111 11222222332222 134566
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC------hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc---hhH
Q 048321 211 SWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD------VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLD---VSV 281 (641)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~ 281 (641)
.|..-+. +..|+..+-...|.+..+. +.|- ...|..+.+.|-..|+++.|..+|+...+...+.- ..+
T Consensus 351 eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 351 EWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 6665554 3456777888888887764 2222 23456777788889999999999999988764433 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC---CCC------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 048321 282 INTLISMYSKCGDIDSARVLFDGI---CDR------------------TRVSWTAMISGYAQKGDLDEALRLFFAMEAAG 340 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~---~~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 340 (641)
|..-..+-.+..+++.|+++.+.. +.+ +...|+..++.--..|-++....+|+++....
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 666667777788889999888765 111 23356666766667788888899999998865
Q ss_pred CCCCHH--HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh---cCCHHHHHHHHhhCCC--CChh
Q 048321 341 ELPDLV--TVLSMISGCGQSGALELGKWFDNYACSGGLKDN-VMVCNALIDMYSK---CGSIGDARELFYALPE--KIVV 412 (641)
Q Consensus 341 ~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~~~~--~~~~ 412 (641)
+..... -|..++ -...-++++.+++++-+..--.|. ..+|+..+.-+.+ ...++.|+.+|++..+ |...
T Consensus 508 iaTPqii~NyAmfL---Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 508 IATPQIIINYAMFL---EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred cCCHHHHHHHHHHH---HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 433322 233333 233456777777776554322333 3466666665544 3468999999999876 3111
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH-
Q 048321 413 ---SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH- 486 (641)
Q Consensus 413 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~- 486 (641)
.|-.-...--..|-...|+.++++.... +++... .|+..|.--...=-+...+.+|+++++. -|+...
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-----Lp~~~~r 658 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-----LPDSKAR 658 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-----CChHHHH
Confidence 1111122223468889999999997764 555443 7888777444433456677888888863 355433
Q ss_pred --HHHHHHHhhccCChHHHHHHHHhCC--CCC--ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 487 --YSCMADLLGRKGKLKEALDFVQSMP--IKS--DAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 487 --~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
.--..++=.+.|..+.|..++.--. .+| +..-|.+.=..-.+|||-+.-.++++
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3345577789999999999987754 455 56679998888899999666555543
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2.9e-12 Score=86.24 Aligned_cols=50 Identities=30% Similarity=0.501 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIH 153 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 153 (641)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.9e-09 Score=95.72 Aligned_cols=265 Identities=14% Similarity=0.118 Sum_probs=155.5
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHHH
Q 048321 222 GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYG-FDLD--VSVINTLISMYSKCGDIDSA 298 (641)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 298 (641)
+.+.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|..+.++- ++.+ ....-.|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456788888888887632 1122333456666777777777777777776542 1111 13344566777888888888
Q ss_pred HHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 299 RVLFDGICDRTR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV----TVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 299 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
+.+|..+.+.+. .+...|+..|-+..+|++|+++-+++.+.+-.+..+ -|--+........+.+.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888887755333 355667778888888888888888777765544432 2333344444555667777777666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 048321 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV 447 (641)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 447 (641)
.+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++.+..+.++.+. .++..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCcc
Confidence 6654 33444444556666666777777776666665443 24455666666667777766666666664 23332
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
.-..+-..-....-.+.|..+..+-.. -+|+...+..+++.-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~-----r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR-----RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh-----hCCcHHHHHHHHHhhh
Confidence 223332222222233444444444332 3466666666665543
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=2.6e-09 Score=99.92 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=176.9
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 292 CGDIDSARVLFDGICD---RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
.|++..|+++..+-.+ .....|..-..+--+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666654422 2223344444455566777777777766665422333333444444566667777777766
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHH
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV-----------VSWTTMIAGCALNGEFVEALDLFHQL 437 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m 437 (641)
+.+.+.+ +..+.+.....++|.+.|++.....+...+.+... .+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666665 44566667777777777777777777777765321 35666666555555555544555555
Q ss_pred HHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCC
Q 048321 438 MELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSD 515 (641)
Q Consensus 438 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~ 515 (641)
-.+ .+-+...-.+++.-+...|+.++|.++..+..+ .+ ..|+ ...+ -...+-++.+.=++..+... .+.+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~--~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQ--WDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hc--cChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 443 344555666677777788888888888777774 33 3444 1111 22234455554444444432 2334
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+..+.+|...|.+++.+.+|...++.+++..|+ .+.|..++.+|.+.|+.++|.+++++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 578888999999999999999999999999887 7889999999999999999999988765
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=3.8e-12 Score=85.63 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=48.1
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAK 66 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 66 (641)
||++ +||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~-~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVV-TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchH-HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6888 9999999999999999999999999999999999999999999974
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=5e-10 Score=112.40 Aligned_cols=232 Identities=16% Similarity=0.138 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHc-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSG-----GL-KDNVM-VCNALIDMYSKCGSIGDARELFYALPE-------K-- 409 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 409 (641)
.|...+...|...|+++.|..+++..++. |. .|.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666777888888888888888877763 21 22222 334477788999999999999988754 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCh-h-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCC
Q 048321 410 --IVVSWTTMIAGCALNGEFVEALDLFHQLME-----LDLRPNR-V-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISY 480 (641)
Q Consensus 410 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (641)
-..+++.|..+|.+.|++++|..++++..+ .|..+.. . -++.+...|...+.+++|..+++...+....-.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 135788888899999999999888887764 1222222 2 566677789999999999999887765332111
Q ss_pred CCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc-
Q 048321 481 NPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKL- 545 (641)
Q Consensus 481 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 545 (641)
.++ ..+++.|..+|...|++++|.++++++. ..+. ...++.|...|...++++.|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 4678999999999999999999999864 1222 446778889999999999999998877543
Q ss_pred ---CCCC---CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 546 ---EPHS---AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 546 ---~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.|++ ...|..|+.+|.++|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4544 4578899999999999999999988765
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.1e-09 Score=97.44 Aligned_cols=311 Identities=12% Similarity=0.066 Sum_probs=164.7
Q ss_pred CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch-------HHHHHHHHHhCCChhHH
Q 048321 257 PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVS-------WTAMISGYAQKGDLDEA 329 (641)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A 329 (641)
.++.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.++...| .-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 355666777777766532 3334445566677777777777777766653322222 23344556666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 048321 330 LRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK 409 (641)
Q Consensus 330 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 409 (641)
..+|..+.+.+. --......|+..|-...++++|..+-.++.+.+-.+... -+..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 666666655321 122334455555555555555555555555443222110 0111
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL-QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
.|--+...+....+.+.|..++.+..+. .|+.+--+.++ ......|+++.|.+.++...+ .+ ..--..+..
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn--~~yl~evl~ 253 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE-QN--PEYLSEVLE 253 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH-hC--hHHHHHHHH
Confidence 2222333344445566666666666654 44444333333 255556666666666666653 22 112234455
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh--cCC
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL--GGR 565 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~ 565 (641)
.|..+|...|+.++...++.++. ..++...-..+...-....-.+.|...+.+-+...|+-...|-.+.--+.+ -|+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 55666666666666666665543 334443344443333333344455555555555566533333333222332 366
Q ss_pred chHHHHHHHHHHhCCCccCCceeEEEECCEEEEEee
Q 048321 566 WDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTA 601 (641)
Q Consensus 566 ~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~ 601 (641)
+.+-..+++.|....++..|-+.....+=+.|+|.-
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 888888888888877777777766666666676654
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=6.1e-10 Score=117.53 Aligned_cols=175 Identities=10% Similarity=-0.030 Sum_probs=94.5
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHH
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++++|...+++..+ .+...|..+...+...|++++|+..|+++.+. .|+.. .+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35556666555543 24455555555566666666666666666654 34433 44555556666666666666666
Q ss_pred HHHhhhCCCCCCCh-hHHHHHHHHhhccCChHHHHHHHHhCC--CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 471 IQYDDKGISYNPEL-DHYSCMADLLGRKGKLKEALDFVQSMP--IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 471 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
.+.+. .|+. ..+..++..+...|++++|+..+++.. .+|+ +..+..+...+...|+.++|...++++....
T Consensus 397 ~Al~l-----~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 397 ECLKL-----DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHhc-----CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 66642 2331 122223333444566666666666543 2233 2234445555556666666666666665555
Q ss_pred CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 547 PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 547 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|.+......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 555555555566666555 355555555443
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=2.4e-09 Score=113.00 Aligned_cols=244 Identities=13% Similarity=-0.014 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHh---------cCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 325 DLDEALRLFFAMEAAGELPDLV-TVLSMISGC---------GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 325 ~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
..++|..+|++..+. .|+.. .+..+..++ ...++.++|...++++++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888887764 45433 333332222 13456889999999998876 557788888888999999
Q ss_pred CHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHH
Q 048321 395 SIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 395 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998765 3 4568888999999999999999999999986 56543 33344445667899999999999
Q ss_pred HHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 471 IQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 471 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
++....+ |+ ...+..+..+|...|++++|...+.++. ..|+.. .++.+...+...| +.|...++++++..-
T Consensus 431 ~~l~~~~----p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQHL----QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhcc----ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9875432 43 5557778899999999999999999866 455443 4555555666666 478887877776543
Q ss_pred CCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 548 HSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3333444478888889998888877 6666643
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.6e-07 Score=92.38 Aligned_cols=434 Identities=14% Similarity=0.093 Sum_probs=264.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHH--HHHHhH--c
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT--WISSYA--K 188 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~--~ 188 (641)
+.-+.+.|++++|......+...+ +-|...+..-+-+..+.+.+++|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 455677899999999999998754 33445577777788889999998855433 21 1122222 245555 6
Q ss_pred CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHHHHH
Q 048321 189 CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+-.. ...
T Consensus 92 lnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV- 161 (652)
T ss_pred cccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-
Confidence 7999999999995555 4555666667788999999999999999988765221 1112222222111 111
Q ss_pred HHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCcc----------hHHHHHHHHHhCCChh
Q 048321 268 SHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLFDGI--------CDRTRV----------SWTAMISGYAQKGDLD 327 (641)
Q Consensus 268 ~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~~g~~~ 327 (641)
..+......|+ -..+-.....+...|++.+|+++++.. ...|.. .--.|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 11222222232 122222445677899999999999766 222211 1123445677899999
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHHHHHhcCcCchHH--HHHHHHHHH-----------HcCCCCchhHHHHHHHHH
Q 048321 328 EALRLFFAMEAAGELPDLVT----VLSMISGCGQSGALEL--GKWFDNYAC-----------SGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 328 ~A~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~li~~~ 390 (641)
+|..+|...++.. .+|... -|.++.. ..-.++-. ....++... ...-......-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 345422 2223322 22222111 111111111 000011112223344444
Q ss_pred HhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHH
Q 048321 391 SKCGSIGDARELFYALPEKI-VVSWTTMIAGCA--LNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a 465 (641)
. +..+.+.++-...+... ...+.+++.... +...+..|.+++...-+. .|.. +.....+......|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 45667777777766532 334444444332 223577788888877765 4554 3445555677889999999
Q ss_pred HHHHH--------HHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-----CCCChh----HHHHHHHHHHH
Q 048321 466 WAISI--------IQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAG----IWGTLLCACKI 528 (641)
Q Consensus 466 ~~~~~--------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~ll~~~~~ 528 (641)
.+++. .+. . +.-.+.+..+++.++.+.++.+.|.+++.+.. ..+... +|.-+...-.+
T Consensus 396 ~~il~~~~~~~~ss~~-~----~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL-E----AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHhhhhhhhhh-h----hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99988 444 2 33455677888899999888777776666543 112222 34444445567
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
+|+.++|..+++++++.+|++....+.++-.|++.. .+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 899999999999999999999999999999999864 5556665433
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.7e-09 Score=104.34 Aligned_cols=212 Identities=18% Similarity=0.105 Sum_probs=151.1
Q ss_pred cCchHHHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 048321 358 SGALELGKWFDNYACSGG-LKDN--VMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
.+..+.+..-+..++... ..|+ ...|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566777777776532 2222 45677788889999999999999988765 35689999999999999999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 432 DLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
..|++..+. .|+. .++..+..++...|++++|.+.|+...+. .|+..........+...+++++|...|.+.
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999985 6764 47777777888999999999999999863 344322222233445678899999999764
Q ss_pred C--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHh-------HccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 511 P--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCL-------FKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 511 ~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
. ..|+ .|.. .......|+...+ ..++.+ .++.|+.+..|..+|.+|...|++++|...+++..+.+
T Consensus 192 ~~~~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKLDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhCCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4 2333 2321 2222334544333 233333 24556677899999999999999999999999888654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=2.7e-09 Score=100.09 Aligned_cols=199 Identities=16% Similarity=0.070 Sum_probs=107.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345556666666666666666666665432 1123333344444444455555554444444432 1
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
.+...+..+...+...|++++|.+.|++.......|. ...+..+...+...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2233444555555556666666666666654321222 224444555566666666666666
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
....+..+ .+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+.+.|....+.+.+..
T Consensus 159 ~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQIDP----QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66664322 234456666666666777777766666643 22344455555566666677777777666655543
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=6.1e-10 Score=100.79 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=142.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 314 TAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
+.|.++|.+.|.+.+|..-|+.-.+. .|-+.||..+-.+|.+......|..++..-++.- +-++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45666777777777777766666554 3444455555555655556666655555554431 33333334444445555
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 048321 394 GSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 394 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++.++|.++++...+ .++.+..++..+|.-.++++.|+..|+++.+.|+ -+...|+.+.-+|.-.+.++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555443 2333444444455555555666666666655553 344455555555555555555555554
Q ss_pred HHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 471 IQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+..... ..|+ ..+|-.|.......||+..|.+.|+-++.-+|+
T Consensus 383 RAlsta-----------------------------------t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 383 RALSTA-----------------------------------TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhhc-----------------------------------cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 444211 1222 346777777777889999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+.++++.|+-+-.+.|+.++|..+++...+..
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999887654
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.5e-09 Score=93.96 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
+...+.-+|.+.|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+......+ -+-.+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p----~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP----NNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----Cccchhhhhh
Confidence 4556777888999999999999999886 67665 888888889999999999999999886332 3467788888
Q ss_pred HHhhccCChHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
-.++..|++++|...|+.....|+ ..+|..+..+..+.|+.+.|+..+++.++++|+++.....+++.....|++.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 889999999999999998764443 4578888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 048321 568 GVANIRTMMKRNQV 581 (641)
Q Consensus 568 eA~~~~~~m~~~~~ 581 (641)
+|.-+++....++.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999988877653
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=3.2e-08 Score=99.61 Aligned_cols=236 Identities=15% Similarity=0.131 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----------CCCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHc-----CC-C
Q 048321 280 SVINTLISMYSKCGDIDSARVLFDGIC----------DRTRV-SWTAMISGYAQKGDLDEALRLFFAMEAA-----GE-L 342 (641)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~ 342 (641)
.+...|..+|...|+++.|..+|+... .+.+. ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344445555555566655555554331 11111 2334666778888888888888887542 11 1
Q ss_pred CC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCh-hHHHHH
Q 048321 343 PD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALP---EKIV-VSWTTM 417 (641)
Q Consensus 343 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l 417 (641)
|. ..++..|-.+|.+.|++++|...++.+.+ +++... .+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHH
Confidence 11 12334444445555555555444443332 111100 0122 234555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhh----CCCCCCChhH
Q 048321 418 IAGCALNGEFVEALDLFHQLMEL---DLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDK----GISYNPELDH 486 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~p~~~~ 486 (641)
+..++..+++++|..++++..+. -+.++. -+++.+...|.+.|++++|.++|+.++... +....-...+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 66677777888887777765541 122333 277888888888899999888888887543 2111122456
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC--------CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP--------IKSDA-GIWGTLLCACKIHLNIEIGEYVAYCLF 543 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (641)
++-|...|.+.+++++|.++|.+.. ..|+. .+|..|...|...|+++.|+++.+++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7788888888888888888887753 33443 478899999999999999999988876
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=2.8e-07 Score=91.63 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=78.8
Q ss_pred CCChhH--HHHHHHHhhccCChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 481 NPELDH--YSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 481 ~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
+|+... +-.++..+-+.|+++.|+.+++... ..|..+ .|..-...+.+.|+.+.|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 355444 4567788889999999999999876 556544 455556778899999999999999999987665555567
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
++-..++.+.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7888899999999999888877664
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=9.4e-07 Score=89.85 Aligned_cols=409 Identities=15% Similarity=0.081 Sum_probs=263.0
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCC--C-C
Q 048321 132 MRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERL--R-T 208 (641)
Q Consensus 132 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~-~ 208 (641)
+....+.-|...|..+.-+....|+++.+.+.|++....-+. ....|+.+-..|..+|.-..|..+.+.-.... | +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 333346678888888888889999999999999988765433 56778888889999999999999988765542 3 3
Q ss_pred chhHHHHHHHHhc-CCCchHHHHHHHHHHHC--CCC--CChhhHHHHHHHhcC----C-------CchHHHHHHHHHHHH
Q 048321 209 VVSWNSMVAGCTY-GDKFDDSLNFYRHMMYN--GFR--LDVTTVVSLLSSFVC----P-------EALVQGRLVHSHGIH 272 (641)
Q Consensus 209 ~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~----~-------~~~~~a~~~~~~~~~ 272 (641)
+..+-..-..|.+ -+..++++++-.+.... |.. .....|..+.-+|.. . ....++.+.++..++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3333333344443 47788888887777662 111 122233333323321 1 123466777888877
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHH
Q 048321 273 YGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD-LVT 347 (641)
Q Consensus 273 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t 347 (641)
.+ +.|+.+.-.+.--|+..++++.|.+...+. ...+...|..+.-.+...+++.+|+.+.+..... .|+ ..-
T Consensus 473 ~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l 549 (799)
T KOG4162|consen 473 FD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVL 549 (799)
T ss_pred cC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhh
Confidence 76 334444444555677888999998877654 4557789999999999999999999998876653 111 110
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHH---------------------HcCC-------CCchhHHHHHHHHHH---hcCCH
Q 048321 348 VLSMISGCGQSGALELGKWFDNYAC---------------------SGGL-------KDNVMVCNALIDMYS---KCGSI 396 (641)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~~~-------~~~~~~~~~li~~~~---~~g~~ 396 (641)
...-+..-...++.+++......+. +.|+ ...+.++..+..... +.-..
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0001111111233333222111111 0111 111222222222111 11111
Q ss_pred HHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHH
Q 048321 397 GDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 397 ~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
+.....+...+.++ ...|......+.+.+..++|...+.+.... .|-. ..|......+...|..++|.+.|
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 22222222222233 246777778888999999999888888764 4443 35555556777889999999999
Q ss_pred HHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHH--HHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 470 IIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALD--FVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 470 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
..... +.|+ +....++..++.+.|+..-|.. ++.++. ..| +...|..|.....+.|+.++|-+.|..+++
T Consensus 708 ~~Al~-----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 708 LVALA-----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHh-----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 98885 5565 6788999999999998777777 888876 555 677999999999999999999999999999
Q ss_pred cCCCCCc
Q 048321 545 LEPHSAA 551 (641)
Q Consensus 545 ~~p~~~~ 551 (641)
+++.+|.
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9987663
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=2e-08 Score=96.97 Aligned_cols=233 Identities=11% Similarity=-0.030 Sum_probs=160.7
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 323 KGDLDEALRLFFAMEAAG-ELPD--LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 399 (641)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777776532 2222 2346666667788888888888888888765 55678899999999999999999
Q ss_pred HHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhh
Q 048321 400 RELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDK 476 (641)
Q Consensus 400 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 476 (641)
...|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999998865 3 4578888888899999999999999999985 566542222222345567899999999776532
Q ss_pred CCCCCCChhHHHHHHHHhhccCCh--HHHHHHHHhC-C----CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC-
Q 048321 477 GISYNPELDHYSCMADLLGRKGKL--KEALDFVQSM-P----IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP- 547 (641)
Q Consensus 477 ~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p- 547 (641)
..|+...+ .++..+ .|++ +++++.+.+. . ..| ....|..+...+...|++++|+..++++++.+|
T Consensus 195 ---~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 ---LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred ---CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22433222 333333 4444 3334333321 1 112 345789999999999999999999999999997
Q ss_pred CCCccHHHHHHHHHhcCC
Q 048321 548 HSAAPYVEMANKYALGGR 565 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~ 565 (641)
+..++-..++.+....++
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 555565556655544443
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.1e-06 Score=89.82 Aligned_cols=432 Identities=13% Similarity=0.087 Sum_probs=220.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcC---
Q 048321 114 VGFAQMGFLENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKC--- 189 (641)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 189 (641)
..+...|++++|++.++.-.. ..+|.. ........+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 445677888888888876443 234443 455556667777888888888887777652 2333444444444222
Q ss_pred --CChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCch-HHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHH
Q 048321 190 --DDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFD-DSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLV 266 (641)
Q Consensus 190 --g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 266 (641)
.+.+....+++++....|.......+.-.+.....+. .+...+..+...|+++ +|+.|-..|.......-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2345556666665554333222222222222211222 2333444445555422 223333333322222222222
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 048321 267 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344 (641)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 344 (641)
+......- ..++.+.... =..-..|... ++.-+...|...|++++|++++++.++. .|+
T Consensus 166 ~~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt 226 (517)
T PF12569_consen 166 VEEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT 226 (517)
T ss_pred HHHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 22211110 0000000000 0000112222 3355566777888888888888877765 455
Q ss_pred H-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hH
Q 048321 345 L-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----------VS 413 (641)
Q Consensus 345 ~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~ 413 (641)
. ..|..-...+-+.|++.+|....+...... .-|..+-+-.+..+.++|++++|.+++.....++. ..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3 455566666778888888888888887765 44666666677777888888888888877766442 13
Q ss_pred H--HHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCh-------------hhHHHHHHHHhccC-------ChHHHHHHH
Q 048321 414 W--TTMIAGCALNGEFVEALDLFHQLMEL--DLRPNR-------------VTFLAVLQACTHTG-------FLEKGWAIS 469 (641)
Q Consensus 414 ~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-------------~t~~~ll~~~~~~g-------~~~~a~~~~ 469 (641)
| .....+|.+.|++..|++-|....+. .+.-|. .+|..++...-+.. -...|.+++
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3 23456778888888887766655431 112222 22333333221111 112344554
Q ss_pred HHHHhhhCCCCCC--Ch---------hHHHHHHHHh---hccCChHHHHHHHH-----------hC----CCCCChhHHH
Q 048321 470 IIQYDDKGISYNP--EL---------DHYSCMADLL---GRKGKLKEALDFVQ-----------SM----PIKSDAGIWG 520 (641)
Q Consensus 470 ~~~~~~~~~~~~p--~~---------~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~ 520 (641)
-.+..... ... .. .--..+..-. .+...-+++...-. .. +.+.|.....
T Consensus 386 l~l~d~~~--~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 386 LELHDKPE--AKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHhcCcc--cccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 44442111 000 00 0001111000 11111122221110 00 1122222221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.-+. ....=.++|.+.++-+.+..|++..+|..-.++|.+.|++--|.+-+..
T Consensus 464 ekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1111 2234578899999999999999999999999999999999988887653
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.6e-06 Score=87.76 Aligned_cols=143 Identities=13% Similarity=0.209 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+. +.. ..|.+ -+.|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~--~E~~i--d~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKV--REPYI--DSEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-Hhh--cCccc--hHHH
Confidence 357999999999999999999877543 356789999999999999999999887666 444 45554 4678
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHH
Q 048321 491 ADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVA 570 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 570 (641)
|.+|++.+++.|-++++. .||..-......-|...|.++.|.-++. +.+.|..|+..+...|.+..|.
T Consensus 1173 i~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999888774 4888888899999999999999887775 3567888999999999998887
Q ss_pred HHHHHH
Q 048321 571 NIRTMM 576 (641)
Q Consensus 571 ~~~~~m 576 (641)
+--++.
T Consensus 1241 D~aRKA 1246 (1666)
T KOG0985|consen 1241 DAARKA 1246 (1666)
T ss_pred HHhhhc
Confidence 765544
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.5e-07 Score=83.14 Aligned_cols=408 Identities=10% Similarity=-0.018 Sum_probs=237.4
Q ss_pred HHHhCCChhHHHHHHHHhHh---CCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccCCC
Q 048321 28 EAVNKNEAHKTLLLFRQMKQ---NDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAVR 104 (641)
Q Consensus 28 ~~~~~~~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~~~ 104 (641)
..-+...+..|..-|....+ ....|+..+..++-+.++.-++.+..+...+.- ...++-+.|.....+.++.
T Consensus 52 ~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy-----~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 52 ANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECY-----RQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHH-----HHHccchHHHHHHhcCCcc
Confidence 33344556666666666543 345666666666666666555554433332211 2346778888888888754
Q ss_pred -CcccHHHHHHHHHhcCC--hhH-------------HHHHHHHHHHcCC---------------CCChhhHHHHHHHHhc
Q 048321 105 -DVASWNAMLVGFAQMGF--LEN-------------VLRLFYNMRLVGI---------------QADFVTVMGLTQAAIH 153 (641)
Q Consensus 105 -~~~~~~~li~~~~~~g~--~~~-------------a~~l~~~m~~~g~---------------~p~~~t~~~ll~~~~~ 153 (641)
...--|.|+.-+-+.|. .+. |+..+.-..+.++ .|+..+...-+++++.
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 33334444444443332 111 2222222222222 2222233333343332
Q ss_pred --cCChhHHHHHHHHHHHH-cCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCC-chhHHHHHHHHhcCCCchHHH
Q 048321 154 --AKHLSLLKSVHSFGIHI-GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRT-VVSWNSMVAGCTYGDKFDDSL 229 (641)
Q Consensus 154 --~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 229 (641)
.++-..+.+.+-.+... -++.|+.....+.+.+...|+.++|...|++.....|+ +.......-.+.+.|+++...
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 23333333333333332 24556677788888888888888888888887663121 222222233345677777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---C
Q 048321 230 NFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---C 306 (641)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 306 (641)
.+...+.... .-....|-.-+...-...+++.|..+-+..++.. +.+...+-.-...+...++.++|.-.|+.. .
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7766665421 1122222222333345667777777777776654 334455555556677788888888888765 2
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhc-CcCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 307 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMI-SGCG-QSGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
+-+...|.-|+.+|...|.+.+|.-+-+...+. +..+..+++.+. ..|. ...--++|..+++...+.. +.-....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 346678888888888888888887766554432 233444444442 2232 2334577888887776654 33345667
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR 446 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 446 (641)
.+...+...|..+++..+++.... +|....+.|...+...+.+++|++.|....+. .|+.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 777788888888888888887654 78888888888888888888888888888774 5543
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=1.7e-06 Score=86.24 Aligned_cols=453 Identities=9% Similarity=-0.029 Sum_probs=228.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 187 (641)
.|..++.+| ..+++...+.+.+...+. .+-...|....--.+...|+.++|....+...+..+ .+.++|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 344445544 346677777777666652 222233333333334456777777777766666433 25567777766666
Q ss_pred cCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHHH
Q 048321 188 KCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGRL 265 (641)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 265 (641)
...++++|.+.|...... +.|...|.-+.-.-++.++++...+.-.+..+. .|+ ...|.....+.--.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888776665 455666666666666667777666666666553 233 3444555555666777777777
Q ss_pred HHHHHHHhC-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--Ccc-hHHHHHHHHHhCCChhHHHHHHHH
Q 048321 266 VHSHGIHYG-FDLDVSVINTLI------SMYSKCGDIDSARVLFDGICDR--TRV-SWTAMISGYAQKGDLDEALRLFFA 335 (641)
Q Consensus 266 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~ 335 (641)
+.+...+.. -.|+...+.... ....+.|.++.|.+.+....+. |-. .--.-...+.+.++.++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 777776655 244544443322 2334566777777666554322 111 122334556677778888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHhc-C-cCchHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 048321 336 MEAAGELPDLVTVLSMISGCG-Q-SGALELGKWFDNYACSGG---LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI 410 (641)
Q Consensus 336 m~~~~~~p~~~t~~~ll~~~~-~-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 410 (641)
++.. .||..-|...+..+. + .+..+....++....+.- ..|-....+ ++. -..-.+...+++..+.++.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---GEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---cchhHHHHHHHHHHHhhcC
Confidence 7765 466666655554443 1 222222224444333211 011000000 000 0001111122222222211
Q ss_pred -hhHHHHHHHHHHHcCChHHH----HHHHHHHHHcC----------CCCChh--hHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 411 -VVSWTTMIAGCALNGEFVEA----LDLFHQLMELD----------LRPNRV--TFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 411 -~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g----------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
+..+..+...|-.....+-. ..+...+...| -+|... |+..+...+-+.|+++.|..+.+.+.
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 12222222222211111100 11111111111 023333 33445556667777777777777766
Q ss_pred hhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-
Q 048321 474 DDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS- 549 (641)
Q Consensus 474 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 549 (641)
. ..|+ ++.|..-...+...|.+++|..++++.. ..||..+-.--..-..+.++.++|.++......-+-+-
T Consensus 399 d-----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 399 D-----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred c-----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 3 2354 4555555666777777777777777765 33343332233333345666777776665544332210
Q ss_pred --------CccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 550 --------AAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 550 --------~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
......=|..|.++|+|.+|.+-+..+
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 011112255677777777776655444
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=3.1e-07 Score=92.20 Aligned_cols=17 Identities=6% Similarity=0.346 Sum_probs=10.4
Q ss_pred HHhCCChhHHHHHHHHh
Q 048321 29 AVNKNEAHKTLLLFRQM 45 (641)
Q Consensus 29 ~~~~~~~~~A~~~~~~m 45 (641)
-...|+++.|..+++..
T Consensus 454 aid~~df~ra~afles~ 470 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL 470 (1636)
T ss_pred ccccCchHHHHHHHHhh
Confidence 34566777776666544
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6e-06 Score=84.38 Aligned_cols=243 Identities=14% Similarity=0.088 Sum_probs=133.6
Q ss_pred hHHHHHH--HHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHh
Q 048321 21 QWNSQIR--EAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIF 98 (641)
Q Consensus 21 ~~~~li~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f 98 (641)
|-.+++. .|+--|+.+.|.+-.+-++ +...|..+.+.|.+..+++-|+...+++.. ...|+.+=
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~--------aRgaRAlR 793 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN--------ARGARALR 793 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh--------hhhHHHHH
Confidence 4445553 4566777777777666554 355677888888888777777776666532 22222222
Q ss_pred hccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH
Q 048321 99 DEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV 178 (641)
Q Consensus 99 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 178 (641)
+....++ ..=.-+.-...+.|-.++|+.+|++.++. ..+=+.|-..|.+++|.++-+.--+..+. .+
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~T 860 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NT 860 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hh
Confidence 2222221 10001111123345555555555555432 22333334445555555543322111111 12
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccC-----------C----------CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEE-----------R----------LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY 237 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~-----------~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (641)
|..-..-+-..++.+.|++.|++... . ..|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 22222223333444444444433221 0 13445555555666667888888888877654
Q ss_pred CCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048321 238 NGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305 (641)
Q Consensus 238 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 305 (641)
|-++++..|-.|+.++|.++-++ ..|....-.|.+.|-..|++.+|..+|-+.
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55677777788888888877655 346677777888888888888888888654
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.6e-07 Score=86.30 Aligned_cols=453 Identities=11% Similarity=0.064 Sum_probs=259.9
Q ss_pred HHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccC---
Q 048321 26 IREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMA--- 102 (641)
Q Consensus 26 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~--- 102 (641)
+.-+..+.++..|+.+++--...+-. .......-|..|. ...|++++|...+..+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~--------------------fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCY--------------------FHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHH--------------------HhhccHHHHHHHHHHHhccC
Confidence 45566677788887777655432222 1123333444442 34577777777776654
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (641)
.++...|-.|.-++.-.|.+.+|..+-....+ +...-..++...-+.++-++..++++.+... ..-.-+|
T Consensus 88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSL 157 (557)
T KOG3785|consen 88 DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSL 157 (557)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhH
Confidence 34556666676666677888888877655422 2333444555556778888888887776653 2333445
Q ss_pred HHHhHcCCChhHHHHHHhcccCCCCCchhHHHH-HHHHhcCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcCCCch
Q 048321 183 ISSYAKCDDLKMAELVFCGIEERLRTVVSWNSM-VAGCTYGDKFDDSLNFYRHMMYNGFRLDV-TTVVSLLSSFVCPEAL 260 (641)
Q Consensus 183 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 260 (641)
.++.-..-.+.+|+.++.++....|+-...|.- .-+|.+..-++-+.++++--.+. + ||+ ...+.......+.=+-
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLING 235 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhcc
Confidence 555444556889999999888754555555543 35677888888888888777664 2 443 3333333333332222
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 048321 261 VQGRLVHSHGIHYGFDLDVSVINTLISMYSK-----CGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFA 335 (641)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (641)
..|.+-...+.+.+-..- ..+.-.++ ...-+.|++++-.+.+.=+.+--.|+--|.+.++..+|..+.++
T Consensus 236 r~ae~E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred chhHHHHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 223333333332221110 01111122 12334555555444222222333455567788888888888776
Q ss_pred HHHcCCCCCHHHHHHHHHH-----hcCcCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 048321 336 MEAAGELPDLVTVLSMISG-----CGQSGALELGKWFDNYACSGGLKDNVM-VCNALIDMYSKCGSIGDARELFYALPE- 408 (641)
Q Consensus 336 m~~~~~~p~~~t~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~- 408 (641)
+.- ..|-....-.+..+ ......+.-|.+.|+.+-.++...|.. --.++...+.-..++++.+-.++.+..
T Consensus 311 l~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 311 LDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred cCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 23333333222222 223335666777777766666544432 233455555556677887777777664
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCCh
Q 048321 409 ---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPEL 484 (641)
Q Consensus 409 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~ 484 (641)
.|.+.+| +..+++..|.+.+|.++|-+.....+ -|..+|.+++. +|.+.+..+.|+.++-.+. ...+.
T Consensus 389 F~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~------t~~e~ 460 (557)
T KOG3785|consen 389 FTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN------TPSER 460 (557)
T ss_pred hcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC------CchhH
Confidence 3444444 56788888999999988877654432 35567766655 7788888888888765443 11222
Q ss_pred hH-HHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHH
Q 048321 485 DH-YSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCAC 526 (641)
Q Consensus 485 ~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~ 526 (641)
.+ ...+..-+-+++.+--|-+.|+.+. ..|++..|..--.+|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH
Confidence 22 3344466678888877777777776 678888886544444
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.8e-07 Score=88.92 Aligned_cols=411 Identities=10% Similarity=0.026 Sum_probs=217.0
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCC-chhHHHHHHHHhcCCCchH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRT-VVSWNSMVAGCTYGDKFDD 227 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 227 (641)
.+....|+++.|...|-..+.... ++...|+.-..+|++.|++++|.+=-.+-.+..|+ ...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 455667777777777777776543 36667777777777777777776655444443233 5567777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCC---chHHHHHHHHHHHHhC---CCCchhHHHHHHHHH----------Hh
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE---ALVQGRLVHSHGIHYG---FDLDVSVINTLISMY----------SK 291 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~----------~~ 291 (641)
|+.-|.+=++.. +-|...++.+..+..... +.-..-.++..+...- .......|..++..+ ..
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 777777765532 123344455555541000 0000000000000000 000001111111111 00
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHH-hCCChh----HHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCcCchHHHH
Q 048321 292 CGDIDSARVLFDGICDRTRVSWTAMISGYA-QKGDLD----EALRLFFAMEA-AGELPDLVTVLSMISGCGQSGALELGK 365 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~----~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~ 365 (641)
..++..+.-.+...... .+...-.... ....+. .......++.+ ...+--..-...+..+.-+..+++.+.
T Consensus 168 d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred cHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111111000000 0000000000 000000 00000000000 000001112445555666666667777
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hHHHHHHHHHHHcCChHHHHHHHH
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----------VSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
+-+....... .+..-++....+|...|.+.+....-....+..- .+...+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7666666654 4455555566666666666655554444332111 122224456667788888999988
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH-HHHHHHHhhccCChHHHHHHHHhCC-CC
Q 048321 436 QLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH-YSCMADLLGRKGKLKEALDFVQSMP-IK 513 (641)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 513 (641)
+.......|+.. .+....+++....+...- +.|.... .-.-+..+.+.|++..|+..+.++. ..
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~-----~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKAY-----INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh-----hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 877654444422 222333444444433331 3344311 1222567788899999999998876 44
Q ss_pred C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 514 S-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.+++..+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 677888888888899999999999999999999989999999999999999999999988877653
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.3e-06 Score=84.45 Aligned_cols=213 Identities=9% Similarity=0.053 Sum_probs=120.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccCC
Q 048321 25 QIREAVNKNEAHKTLLLFRQMKQNDIEPNNL-TFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAV 103 (641)
Q Consensus 25 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~~ 103 (641)
=+.-+...|++++|.....++...+ ||.. .+..=+-+. .+.+.+++|+++.+.-..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvVal---------------------Iq~~ky~~ALk~ikk~~~ 74 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVAL---------------------IQLDKYEDALKLIKKNGA 74 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhh---------------------hhhhHHHHHHHHHHhcch
Confidence 3566778899999999999999866 4433 333333333 334667777765544332
Q ss_pred CCcccHHH--HHHHH--HhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHHcCC-CChh
Q 048321 104 RDVASWNA--MLVGF--AQMGFLENVLRLFYNMRLVGIQADF-VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVD-ADVS 177 (641)
Q Consensus 104 ~~~~~~~~--li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 177 (641)
. .++|. +=.+| -+.+..++|+..++ |..++. .+...-...|.+.++++++..+|+.+.+.+.+ .+..
T Consensus 75 ~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 75 L--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred h--hhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 1 12222 23444 46788888888887 333333 35555566788888999999999988876543 1222
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHH---HHHHhcCCCchHHHHHHHHHHHCCCC-------CCh---
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSM---VAGCTYGDKFDDSLNFYRHMMYNGFR-------LDV--- 244 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~-------p~~--- 244 (641)
.-..++.+-.. -.+. +.+..+.. ...+|..+ ...+...|++.+|+++++...+.+.+ -+.
T Consensus 148 ~r~nl~a~~a~----l~~~-~~q~v~~v--~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie 220 (652)
T KOG2376|consen 148 RRANLLAVAAA----LQVQ-LLQSVPEV--PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE 220 (652)
T ss_pred HHHHHHHHHHh----hhHH-HHHhccCC--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH
Confidence 22222222111 1111 34444442 23344433 34567789999999998887332110 000
Q ss_pred ---hh-HHHHHHHhcCCCchHHHHHHHHHHHHhC
Q 048321 245 ---TT-VVSLLSSFVCPEALVQGRLVHSHGIHYG 274 (641)
Q Consensus 245 ---~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (641)
.+ -..+.-.+...|+-++|..++..+++..
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 00 1122334455677777777777777766
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.3e-08 Score=99.78 Aligned_cols=219 Identities=11% Similarity=0.019 Sum_probs=176.9
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
+.+.|++.+|.-.|+..++.. +.+...|.-|...-...++-..|+..+.+..+ .|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888888776 66778888888888888888888888888776 46677788888899999999999
Q ss_pred HHHHHHHHcCCC-----C---ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 432 DLFHQLMELDLR-----P---NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 432 ~~~~~m~~~g~~-----p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
..++.-+....+ + +..+-.. ..+.+...+....++|-.+....+ ..+|.....+|.-+|--.|.+++|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhcchHHHHH
Confidence 999988764211 0 1000000 223334455667778888887777 678999999999999999999999
Q ss_pred HHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 504 LDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 504 ~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.+.|+.+. .+| |...|+.|...+....+.++|+.++.+++++.|........|+-.|...|.|+||.+.+-....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999977 666 6779999999999999999999999999999999999999999999999999999998876654
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=8.9e-09 Score=93.39 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=179.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGI--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLS-MISG 354 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~ 354 (641)
|..--+.+.++|.+.|.+.+|.+.|+.- ..+-+.||-.|-+.|.+..++..|+.+|.+-.+. .|-.+||.. ....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 3344567889999999999999998876 4466778888999999999999999999887764 677777653 4445
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
+...++.+.+.++++...+.. +.++....++...|.-.++++.|...++++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 667788899999999988865 55666667777788888999999999998765 57778888888888899999999
Q ss_pred HHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 432 DLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
..|++....--.|+.. .|..+-......|++..|.+.|+....... ...+.++.|.-+-.|.|++++|..+++.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~----~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA----QHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc----chHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999998765456654 566666677788999999999998874322 4467788888888888888888888887
Q ss_pred CC
Q 048321 510 MP 511 (641)
Q Consensus 510 ~~ 511 (641)
..
T Consensus 455 A~ 456 (478)
T KOG1129|consen 455 AK 456 (478)
T ss_pred hh
Confidence 65
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=2.7e-06 Score=88.78 Aligned_cols=533 Identities=13% Similarity=0.025 Sum_probs=309.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhh-------------ccC--
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK-------------SPF-- 85 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~-------------~~~-- 85 (641)
.|..|-..|..--+...|...|++..+.... +......+...|+...+++.|..|.-..-+ .|+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 5777777777777888888888887763322 344566677778888888777776332222 122
Q ss_pred cCCCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--HhccCChhHH
Q 048321 86 VKCDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQA--AIHAKHLSLL 160 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 160 (641)
...++...|..-|+..- +.|...|..+..+|.++|++..|+++|.+... +.|+. +|.....+ -+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 55677888888887643 45788999999999999999999999998876 45654 33333322 3466888888
Q ss_pred HHHHHHHHHHc------CCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC---------CCCchhHHHHHHHHhcCCCc
Q 048321 161 KSVHSFGIHIG------VDADVSVCNTWISSYAKCDDLKMAELVFCGIEER---------LRTVVSWNSMVAGCTYGDKF 225 (641)
Q Consensus 161 ~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~ 225 (641)
...++.++..- ...-..++-.+...+...|-...|...|+.-.+. ..+...|-.+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------- 719 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------
Confidence 88888776531 1111223333333333334444444444432221 1122222222
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC--
Q 048321 226 DDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL---V---QGRLVHSHGIHYGFDLDVSVINTLISMYSK----CG-- 293 (641)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g-- 293 (641)
..|..+|-+.. .. .|+......+..-.-..+.. + .|.+-+-.-. .+..+...|..|+..|.+ +|
T Consensus 720 sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCc
Confidence 23344444443 11 24444444443323222222 1 1111111111 112234444445444433 22
Q ss_pred --CHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 294 --DIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 294 --~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
+...|+..+... ...+..+||.|.-. ...|.+.-|...|-+-+... +....+|..+--.|....+++.|...+
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHH
Confidence 234566666644 45677789888766 66678888888776665542 345567877877888899999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC-----CC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL-----PE---KIVVSWTTMIAGCALNGEFVEALDLFHQLME- 439 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 439 (641)
...+... +.+...|-.........|+.-++..+|..- .. ++..-|-.-..-..++|+.++-+..-+.+-.
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 9887654 445555555554556678888888888762 11 4455555555555667776655444333221
Q ss_pred --------cCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH----HHHHhhccCChHHHHHHH
Q 048321 440 --------LDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC----MADLLGRKGKLKEALDFV 507 (641)
Q Consensus 440 --------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~ 507 (641)
.|.+-+...|.....-..+.+.++.|.+...+...-.. .+-+...|+. +...+...|.++.|..-+
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe--~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLE--LKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 12233456777777777777777777766665543222 2344445553 345566778888877777
Q ss_pred HhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH---HHHHHHHhcCCchHHHHHHHHHH
Q 048321 508 QSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV---EMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 508 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
...+...+..+...-+.. .-.++++++.+.|++++.+.-++....+ .++.....+|.-+.|...+-+..
T Consensus 1031 ~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1031 WKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred cccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 665533344433333333 4567899999999998887655443222 33444556666777776554443
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=3e-07 Score=79.97 Aligned_cols=189 Identities=14% Similarity=-0.007 Sum_probs=93.8
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEA 430 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 430 (641)
.|...|+...|+.-+++.++.. +.+..++..+...|.+.|..+.|.+-|+...+ .+....|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444433 33344455555555555555555555554433 2334444445555555555555
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHH
Q 048321 431 LDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQ 508 (641)
Q Consensus 431 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 508 (641)
...|++....-.-|.. .||..+.-+..+.|+.+.|..+|++..+. .|+ ....-.+.......|++-.|..+++
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-----DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-----CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555543212221 24555444445555555555555555531 222 3344455555555555555555555
Q ss_pred hCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 509 SMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 509 ~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
... ..++..+....+..-...||.+.+-+.-.++....|.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 543 2344444444444455556655555555555555554
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=6.7e-08 Score=91.84 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh--
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT-- 457 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-- 457 (641)
..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHH
Confidence 333333445666778888888888765 45566667788888899999999999998864 334 34444444332
Q ss_pred --ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH-
Q 048321 458 --HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI- 532 (641)
Q Consensus 458 --~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~- 532 (641)
..+.+.+|.-+|+++.+++| +++...+.+..++...|++++|.+++.+.. ..| |+.++..++..+...|+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HhCchhHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 23468889999999886655 777888888888888888888888888755 333 556777777777777766
Q ss_pred HHHHHHHHHhHccCCCC
Q 048321 533 EIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~ 549 (641)
+.+.+...++....|++
T Consensus 253 ~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHCHHHTTTS
T ss_pred hHHHHHHHHHHHhCCCC
Confidence 67778888888888874
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00016 Score=76.02 Aligned_cols=461 Identities=13% Similarity=0.084 Sum_probs=248.0
Q ss_pred ChhHHHHHhhccCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 048321 90 RLDCAYKIFDEMAV--RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFG 167 (641)
Q Consensus 90 ~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (641)
.++.+.+.-..++. +...-++.+...+...+....+..++-...+. ..|+....-+-+---.-.+-++ +-+.+
T Consensus 524 sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~~aPq----VADAI 598 (1666)
T KOG0985|consen 524 SPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLVHAPQ----VADAI 598 (1666)
T ss_pred ChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhccchH----HHHHH
Confidence 45555555444442 23445677777777777777777777666553 3565544333222111222222 33333
Q ss_pred HHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHH----HHHHHHhcCCCchHHHHHHHHHHHCCCCCC
Q 048321 168 IHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWN----SMVAGCTYGDKFDDSLNFYRHMMYNGFRLD 243 (641)
Q Consensus 168 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 243 (641)
.-.+.- +..-+..+.+.|.+.|-...|++.|..+....+.++.-+ ..+-.|.-.-.++++++.++.|...+++.|
T Consensus 599 LgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqN 677 (1666)
T KOG0985|consen 599 LGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQN 677 (1666)
T ss_pred Hhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 332221 222266778889999999999988877765422222111 123345555678899999999999888888
Q ss_pred hhhHHHHHHHhcCCCchHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----
Q 048321 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIH-----------YGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD----- 307 (641)
Q Consensus 244 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 307 (641)
..+...+..-|...=..+...++|+.... .++.-|+.+.-..|.+-++.|++.+..++.++-.-
T Consensus 678 lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpEr 757 (1666)
T KOG0985|consen 678 LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPER 757 (1666)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHH
Confidence 77666555555443333333444433322 13456777777889999999999998887654310
Q ss_pred --------------C------------CcchH---H---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----------
Q 048321 308 --------------R------------TRVSW---T---AMISGYAQKGDLDEALRLFFAMEAAGELPDL---------- 345 (641)
Q Consensus 308 --------------~------------~~~~~---~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------- 345 (641)
| |.+.| | -.|..|.+.=+....-.+...+....+.-+.
T Consensus 758 vKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~g 837 (1666)
T KOG0985|consen 758 VKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRG 837 (1666)
T ss_pred HHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhc
Confidence 0 11111 0 1233333332222221111111111110000
Q ss_pred -HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH--------------------------
Q 048321 346 -VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD-------------------------- 398 (641)
Q Consensus 346 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-------------------------- 398 (641)
+....+..-+.+.+++..-..+++..+..| ..|+.++|+|...|...++-.+
T Consensus 838 q~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 838 QFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred cCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceE
Confidence 001123333444555555556666666666 4567777777776655432211
Q ss_pred --------------------------HHHHHhhC--------C--------------------C-CChhHHHHHHHHHHH
Q 048321 399 --------------------------ARELFYAL--------P--------------------E-KIVVSWTTMIAGCAL 423 (641)
Q Consensus 399 --------------------------A~~~~~~~--------~--------------------~-~~~~~~~~li~~~~~ 423 (641)
|+-+.++. . + .|+...+.-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 11000000 0 0 122233334455556
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh----hHHHH----------------------------HHHHhccCChHHHHHHHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRV----TFLAV----------------------------LQACTHTGFLEKGWAISII 471 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~----t~~~l----------------------------l~~~~~~g~~~~a~~~~~~ 471 (641)
.+-+.+-++++++..-. |+.. ....+ ...+...+.+++|..+|+.
T Consensus 997 adLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred cCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH
Confidence 66666666666665532 1111 11111 1112223445555555543
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 472 QYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
.- .+......|++ .-+.+|+|.++-++.. .+.+|..+..+-...|.+.+|++-+-++ +||+
T Consensus 1074 f~--------~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyika-----dDps 1134 (1666)
T KOG0985|consen 1074 FD--------MNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPS 1134 (1666)
T ss_pred hc--------ccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcH
Confidence 21 22233333332 3455666666655543 4578999999999999999998877543 6789
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.|..++++-.+.|+|++-.+++...+.+
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999999988776654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.3e-05 Score=80.90 Aligned_cols=353 Identities=14% Similarity=0.094 Sum_probs=158.6
Q ss_pred HHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch
Q 048321 181 TWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL 260 (641)
Q Consensus 181 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 260 (641)
+-|+.|.+.|....|.+.-..-.....|......+..++.+..-+++|-++|+++.. +...+..+-+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 457788888888777665533222234555566666666666667777777766643 11222222222223
Q ss_pred HHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 048321 261 VQGRLVHSHGIHYGFDLDVSVI-NTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (641)
-+|.++-+... +..++.. ..-...+...|+++.|...|-+.. ..---|.+......+.+|+.+++.++.+
T Consensus 691 ~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 33333322211 1111110 111222233344444444443220 0011123334445555555555554433
Q ss_pred CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHH
Q 048321 340 GELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI--VVSWTTM 417 (641)
Q Consensus 340 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l 417 (641)
. .-.--|..+...|+..|+++.|+++|-+. ..++--|+||.+.|++++|.++-.+...|. +.+|-+-
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 2 11222344444555555555555554322 123334555555555555555555544432 2233333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---------------------CCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 418 IAGCALNGEFVEALDLFHQLMEL---------------------DLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~---------------------g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
..-+-.+|++.+|.++|-....- ...|+. .|...+..-+...|++..|..-|-+..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~- 909 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG- 909 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-
Confidence 33344444444444433221100 001222 244444455555555555554443322
Q ss_pred hhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh------Hcc---
Q 048321 475 DKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCL------FKL--- 545 (641)
Q Consensus 475 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------~~~--- 545 (641)
-|.+-+++|-..+.+++|..+-+.-. ..|..--...+++-...|+ .|.+++.+. +..
T Consensus 910 -----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggd--aavkllnk~gll~~~id~a~d 975 (1636)
T KOG3616|consen 910 -----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGD--AAVKLLNKHGLLEAAIDFAAD 975 (1636)
T ss_pred -----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcH--HHHHHHHhhhhHHHHhhhhhc
Confidence 23444555555666666655544322 1122223333444333332 344444431 110
Q ss_pred ---------------CCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 546 ---------------EPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 546 ---------------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
...-+..+..++.-+-..|++++|.+-+-+..
T Consensus 976 ~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 976 NCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred ccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 11124556667777888899999877655443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=2.6e-08 Score=94.66 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=158.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
+-+.-.|++..++.-.+ ........+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445677777775544 22211112233444555666666765543 23333333 555555555555444445566
Q ss_pred HHHHHHhhCCC-C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048321 398 DARELFYALPE-K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 398 ~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
.+..-+++... + +....-.....+...|++++|++++++- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655443 2 2222222223455679999999988753 34456666778999999999999999999
Q ss_pred HhhhCCCCCCChhH---HHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 473 YDDKGISYNPELDH---YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 473 ~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
.+ +..|... ..+.+..+.-...+.+|..+|+++. ..+++.+.+.+..++...|++++|+..++++++.+|
T Consensus 158 ~~-----~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 158 QQ-----IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HC-----CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred Hh-----cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 84 3345322 2334444444457999999999987 457788889999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 048321 548 HSAAPYVEMANKYALGGRW-DGVANIRTMMKRN 579 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~-~eA~~~~~~m~~~ 579 (641)
+++.+...++-+..-.|+. +.+.+++.+++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999998 6678899888763
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.9e-06 Score=76.47 Aligned_cols=408 Identities=11% Similarity=0.010 Sum_probs=212.5
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHH-HHHHh
Q 048321 142 VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSM-VAGCT 220 (641)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~ 220 (641)
.-|.+++..+.+..++..+.+++..-.+.. +.+..-.+.|..+|-...++..|-..++++....|...-|... ...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555555566666666666655544432 1144445556666777777777777777766654443333322 34556
Q ss_pred cCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH--hcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 221 YGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSS--FVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA 298 (641)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 298 (641)
+.+.+.+|+.+...|... |+...-..-+.+ ..+.+++..+..+.++.... .+..+.+.......+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 677777777777777542 222211111111 23455666666665554322 2344444455555667777777
Q ss_pred HHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HH---HHHHHhcCcCchHHHHHHHHH
Q 048321 299 RVLFDGICD----RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVT-VL---SMISGCGQSGALELGKWFDNY 370 (641)
Q Consensus 299 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~---~ll~~~~~~~~~~~a~~~~~~ 370 (641)
.+-|+...+ .....||.-+..| +.|+++.|+++..+++++|++-.+.. .. -.+.+ ...|+. ..++..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHH
Confidence 777765532 2334566544433 45667777777777777766432210 00 00000 000000 000000
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-
Q 048321 371 ACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP- 444 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 444 (641)
. -+..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+. .|
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPf 308 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPF 308 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCC
Confidence 0 0123343444567889999999999999863 666665543222 235566666655555554 34
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh-ccCChHHHHHHHHhCCCCCChhHHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG-RKGKLKEALDFVQSMPIKSDAGIWGTLL 523 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll 523 (641)
...||..++-.||+..-++.|-.++.+-....- .-.+...|+ +++++. ..-..++|++-++.+....-. -.+.+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTy--k~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklA 384 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTY--KFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLA 384 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhH--HHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 346999999999999988888777643210000 001222333 334443 345677777666554300000 011110
Q ss_pred -HHH-HHcCCHHHH----HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 524 -CAC-KIHLNIEIG----EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 524 -~~~-~~~g~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..- .++.+-+++ ++-+++.+++. -......+++|++..++..++++|+.-.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 100 112222222 22233444431 12345668899999999999999876544
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=1.4e-06 Score=89.00 Aligned_cols=127 Identities=13% Similarity=-0.026 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCAL 423 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 423 (641)
++..+...+...|++++|..+.+..++.. +..+..|..-...|-..|++.+|.+.++.... .|-..-+-.+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34445556778888888888888888764 33467777788888888888888888887765 344566667777788
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHhccCChHHHHHHHHHHHh
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTF--------LAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
.|+.++|.+++......+..|-...+ .....+|.+.|++..|+..|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888776654432111 2334577778888877776666554
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=9.3e-06 Score=81.58 Aligned_cols=256 Identities=12% Similarity=-0.042 Sum_probs=143.0
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHH---HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 319 GYAQKGDLDEALRLFFAMEAAGELPDL-VTVLS---MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
.+...|++++|.+.+++..+. .|+. ..+.. ........+....+.+.+.. .....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 455677777777777777664 2332 22221 11111223444444444443 11111222334445566777788
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHhccCChHHHHHH
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-RPNR--VTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888877655 3455677777778888888888888887776421 1222 1344566677788888888888
Q ss_pred HHHHHhhhCCCCCCChhHH-H--HHHHHhhccCChHHHHHH---HHhCC-CCCC---hhHHHHHHHHHHHcCCHHHHHHH
Q 048321 469 SIIQYDDKGISYNPELDHY-S--CMADLLGRKGKLKEALDF---VQSMP-IKSD---AGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++......+ ..+..... + .+..-+...|..+.+... ..... ..|. .........++...|+.+.|...
T Consensus 209 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 209 YDTHIAPSA--ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHhcccc--CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 887653211 11111111 1 222333333422222221 11111 1011 12223455666778888888888
Q ss_pred HHHhHccC-C--------CCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 539 AYCLFKLE-P--------HSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 539 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++.+.... . .......+.+.++.+.|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87765421 1 12455667788899999999999998887654
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=5.4e-06 Score=86.65 Aligned_cols=380 Identities=12% Similarity=-0.001 Sum_probs=223.9
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHh
Q 048321 177 SVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF-RLDVTTVVSLLSSF 254 (641)
Q Consensus 177 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~ 254 (641)
..|..|...|+...+...|.+.|+..-+. ..+..++......|++...++.|..+.-..-+... ..-...+..+--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 57888888888888899999999988876 56678889999999999999999988332222110 00111122223345
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhCCChhHHHH
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTA---MISGYAQKGDLDEALR 331 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~ 331 (641)
...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.++-. .....+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 56677777777777777665 5677888899999999999999999998774444333221 1223466788888888
Q ss_pred HHHHHHHc------CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHH-------HcCCCCchhHHHHHHHHHHhcCCHHH
Q 048321 332 LFFAMEAA------GELPDLVTVLSMISGCGQSGALELGKWFDNYAC-------SGGLKDNVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 332 ~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (641)
.+...... +..--..++..+...+...|-...+..+++..+ ......+...|-.+ .+
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sd 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SD 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hH
Confidence 88776542 111111222222222222332333333333222 21111222222221 22
Q ss_pred HHHHHhhCCCCChh--HHHHHHHH-HHHcCCh---H---HHHHHHHHHHHcCCCCChhhHHHHHHHHhc-------c-CC
Q 048321 399 ARELFYALPEKIVV--SWTTMIAG-CALNGEF---V---EALDLFHQLMELDLRPNRVTFLAVLQACTH-------T-GF 461 (641)
Q Consensus 399 A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~-g~ 461 (641)
|..+|.... |+.+ .+..++.. +-..+.. + -+.+.+-.-... ..+..+|..+...|.+ . .+
T Consensus 722 ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 722 ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchh
Confidence 333444333 3311 11111111 1111111 1 111111111111 1223344433332222 1 23
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVA 539 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (641)
...|...+...++... -+..+|+.|.-+ ...|.+.-|.-.|-+.. .+....+|..+...|....|++.|..++
T Consensus 799 ~~~Ai~c~KkaV~L~a----nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCA----NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred HHHHHHHHHHHHHHhh----ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 3467777777775322 445566666554 66678887777665544 4446778999988899999999999999
Q ss_pred HHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.++..++|.|...|...+-+.-..|+.-++..++..
T Consensus 874 ~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999998888888888988888887765
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=2.6e-07 Score=78.33 Aligned_cols=92 Identities=7% Similarity=-0.110 Sum_probs=67.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+..+...+...|++++|...|+... ..| +...|..+...|...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4456667777777777777777755 333 56677777777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHHh
Q 048321 565 RWDGVANIRTMMKR 578 (641)
Q Consensus 565 ~~~eA~~~~~~m~~ 578 (641)
++++|.+.++....
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777655
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=6.5e-07 Score=80.31 Aligned_cols=147 Identities=7% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK 497 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 497 (641)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+..+ .+...|..+...|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P----~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP----QNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHC
Confidence 3467777887776444322221 11 012235667777777887775544 6688899999999999
Q ss_pred CChHHHHHHHHhCC-CCC-ChhHHHHHHHHH-HHcCC--HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 498 GKLKEALDFVQSMP-IKS-DAGIWGTLLCAC-KIHLN--IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 498 g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
|++++|...|++.. ..| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|...
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999876 445 566777777764 66676 59999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 048321 573 RTMMKRNQ 580 (641)
Q Consensus 573 ~~~m~~~~ 580 (641)
++++.+..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 99988653
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=9e-07 Score=82.97 Aligned_cols=179 Identities=12% Similarity=0.028 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----h
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--KI-V---VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV----T 448 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 448 (641)
....+..+...+.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445666667777777888888777776654 21 1 35566677777777888888888877765 34332 2
Q ss_pred HHHHHHHHhcc--------CChHHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHH
Q 048321 449 FLAVLQACTHT--------GFLEKGWAISIIQYDDKGISYNPEL-DHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIW 519 (641)
Q Consensus 449 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 519 (641)
+..+..++... |++++|.+.|+.+...+ |+. ..+..+.... ...... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~----~~~~~~-----------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMD----YLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHH----HHHHHH-----------HHHH
Confidence 33333444443 56777777777776533 332 1222111110 000000 0011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA---APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+...+...|+++.|+..++++++..|+++ ..+..++.+|...|++++|.+.++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668889999999999999999877654 68899999999999999999999888764
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1e-05 Score=82.73 Aligned_cols=354 Identities=11% Similarity=0.084 Sum_probs=202.3
Q ss_pred CChhHHHHHH--HHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHC-CC--------CC
Q 048321 174 ADVSVCNTWI--SSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYN-GF--------RL 242 (641)
Q Consensus 174 ~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p 242 (641)
-|..+-.+++ +.|..-|++|.|.+-.+.+ .+...|..|.+.|.+..+.+-|.-.+-.|... |. .|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 4667777777 4578889999998888777 45678999999999999999888887777542 11 12
Q ss_pred ChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-cchHHHHHHHHH
Q 048321 243 DVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT-RVSWTAMISGYA 321 (641)
Q Consensus 243 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 321 (641)
+ .+-..+.-.....|.+++|+.+|.+..+.. .|-..|-..|.+++|.++-+.-.+-. ..||..-..-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 222223333456789999999999887654 35566778899999988765432211 125666666666
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
..++.+.|++.|++... |-...+ .++.- ++...+++.+. ..|...|......+-..|+++.|+.
T Consensus 870 ar~Di~~AleyyEK~~~----hafev~-rmL~e-----~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV----HAFEVF-RMLKE-----YPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhccHHHHHHHHHhcCC----hHHHHH-HHHHh-----ChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHH
Confidence 78889999998876421 111111 11111 11111222222 2344556666666666777777777
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCC-
Q 048321 402 LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISY- 480 (641)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~- 480 (641)
++....+ |-+++...|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|.++..-.+ -+
T Consensus 934 ~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsn-AIR 1001 (1416)
T KOG3617|consen 934 FYSSAKD-----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSN-AIR 1001 (1416)
T ss_pred HHHHhhh-----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHH
Confidence 7766543 55666666666777777665443 23445555666667777777777666655542100 00
Q ss_pred ---C--CChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH----------hHcc
Q 048321 481 ---N--PELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYC----------LFKL 545 (641)
Q Consensus 481 ---~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----------~~~~ 545 (641)
. -+-..+| +...++..+.-.|-.+|++.... ...-...|.+.|.+.+|+++.-+ +-.+
T Consensus 1002 lcKEnd~~d~L~n--lal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1002 LCKENDMKDRLAN--LALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHHhcCHHHHHHH--HHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 0 0011111 11122333444555555554411 11222345566666666655322 1234
Q ss_pred CCC-CCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 546 EPH-SAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 546 ~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+|+ ||.....-++.+....+|+.|..++-..
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 453 4555555556666666666666555443
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=1.9e-05 Score=72.79 Aligned_cols=315 Identities=10% Similarity=0.019 Sum_probs=171.0
Q ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHH---HHhcCCCchHHHHHHHHHHHHhCCCCchhHH-HH
Q 048321 209 VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLL---SSFVCPEALVQGRLVHSHGIHYGFDLDVSVI-NT 284 (641)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ 284 (641)
+.---.+-..+...|++..|+.-|...++ .|+..|..+. ..|...|+-..|..-+..+++. +||-..- -.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 33344566677778888888888877765 3344444433 3555666666666666666654 4443221 12
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHH
Q 048321 285 LISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELG 364 (641)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 364 (641)
-...+.+.|.++.|..=|+.+.+.++. +|...+|.+-+....+ .......+..+...|+...+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhH
Confidence 234456677777777766665333221 1111111111111000 01122334445567788888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048321 365 KWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD 441 (641)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (641)
+.....+++.. +.|...+..-..+|...|++..|+.-++...+ .+....--+-..+...|+.+.++...++.++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 88888887754 66778888888889999999888876665543 55666666777778888888888888888774
Q ss_pred CCCChh-hHH---HHH---------HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHH
Q 048321 442 LRPNRV-TFL---AVL---------QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQ 508 (641)
Q Consensus 442 ~~p~~~-t~~---~ll---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 508 (641)
.||.- .|. .+- ......+.+.++.+-.+...+..+.........+..+-.++...|++-+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 67764 221 110 0112233444444444444422110000111222333344445555555555555
Q ss_pred hCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 509 SMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 509 ~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+.. ..|| +.++.--..+|.....++.|+.-++++.+.+|+|
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 543 3333 3344444555555555555555555555555554
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=2.7e-05 Score=78.18 Aligned_cols=191 Identities=10% Similarity=0.008 Sum_probs=97.6
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Ch--hHHHHHHHHHHHc
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-----IV--VSWTTMIAGCALN 424 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~ 424 (641)
...+...|+++.|...++...+.. +.+...+..+...|...|++++|...+++.... +. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334455555666666665555543 334555566666666667777776666655431 11 2344566667777
Q ss_pred CChHHHHHHHHHHHHcCC-CCChhhH-H--HHHHHHhccCChHHHHHHHHHHHh---hhCCCCCCChhHHHHHHHHhhcc
Q 048321 425 GEFVEALDLFHQLMELDL-RPNRVTF-L--AVLQACTHTGFLEKGWAISIIQYD---DKGISYNPELDHYSCMADLLGRK 497 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~p~~~~~~~l~~~~~~~ 497 (641)
|++++|+.++++...... .+..... + .++.-+...|..+.+.+. +.+.. .... ...........+.++...
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFP-DHGLAFNDLHAALALAGA 277 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcC-cccchHHHHHHHHHHhcC
Confidence 777777777777654321 1111111 1 222233333433333222 11111 1100 001111112455667777
Q ss_pred CChHHHHHHHHhCC--CCC---C------hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 498 GKLKEALDFVQSMP--IKS---D------AGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 498 g~~~~A~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
|+.++|..+++.+. ... . .........++...|+.+.|.+.+..++.+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888887764 111 1 111222233456788999999888887764
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=2.7e-07 Score=78.27 Aligned_cols=123 Identities=12% Similarity=-0.056 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 432 DLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
.+|++..+. .|+. +.....++...|++++|...|+.+....+ .+...|..+..++.+.|++++|+..|+...
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQP----WSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666654 5654 44566678889999999999999886333 467888999999999999999999999976
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 512 --IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 512 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
.+.++..|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 444677899999999999999999999999999999999999888876544
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=0.00011 Score=83.88 Aligned_cols=257 Identities=12% Similarity=-0.009 Sum_probs=123.2
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCchHHHHHHHHHHHHc----CC-CCchhHHHHHHHHH
Q 048321 320 YAQKGDLDEALRLFFAMEAAGELPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALIDMY 390 (641)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~ 390 (641)
+...|++++|...+++....-...+. .....+...+...|+++.|...+...... |. .....+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 33455555555555554432111111 12222333344555666665555554431 10 01112333444555
Q ss_pred HhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--hhhHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPE-------K----IVVSWTTMIAGCALNGEFVEALDLFHQLMEL--DLRPN--RVTFLAVLQA 455 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~ 455 (641)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 566666666665544322 0 1122333444455567777777666665442 11121 1123333445
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHH-----HHHHHHhhccCChHHHHHHHHhCCCC--CChh----HHHHHHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHY-----SCMADLLGRKGKLKEALDFVQSMPIK--SDAG----IWGTLLC 524 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~ll~ 524 (641)
....|+.++|.+.+........ .......+ ...+..+...|+.+.|...+...... .... .+..+..
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLG--NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh--cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 5566777777776666653211 11110111 01123334567777777776654411 1111 1234455
Q ss_pred HHHHcCCHHHHHHHHHHhHccCC------CCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEP------HSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++...|+.++|...+++++.... .....+..++.+|.+.|+.++|.+.+.+..+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56667777777777776665421 1123455667777777777777777766654
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=0.00012 Score=66.26 Aligned_cols=165 Identities=6% Similarity=-0.050 Sum_probs=90.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMG-LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
+....+.+-.+|-...++..|-+.|+++-.. .|...-|.. -...+.+.+.+..|..+...|... |+...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 4445555666666666666666666666542 444443322 123344455556666665555431 1111111111
Q ss_pred HH--hHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 184 SS--YAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 184 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
.+ .-..+++..+..+.++.+.. .+..+.+.......+.|++++|++-|+...+-|---....|+..+..| +.+++.
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qya 195 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYA 195 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHH
Confidence 11 22356777777777777631 344444445555567777777777777776653323345566555444 556777
Q ss_pred HHHHHHHHHHHhCCC
Q 048321 262 QGRLVHSHGIHYGFD 276 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~ 276 (641)
.|.....+++.+|+.
T Consensus 196 sALk~iSEIieRG~r 210 (459)
T KOG4340|consen 196 SALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777777777776653
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=3.5e-05 Score=71.09 Aligned_cols=303 Identities=9% Similarity=0.002 Sum_probs=167.4
Q ss_pred HHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHH---HHHhcCCCchHHHHHHHHHHHCCCCCChhhHH-HHHHHhcC
Q 048321 181 TWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV---AGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVV-SLLSSFVC 256 (641)
Q Consensus 181 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~ 256 (641)
-|.+.+...|++.+|+.-|....+ .|+..|.++- ..|...|+..-|+.-+....+ ++||-..-. .-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 344555556667777777766666 5555555543 456667777777766666655 345533221 11233456
Q ss_pred CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 048321 257 PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAM 336 (641)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (641)
.|.++.|..-|+.++++....+. ...++.+.-..++-+. ....+..+...|+...|++....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHH
Confidence 67777777777777665421110 0111111111111111 112233344455555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh--
Q 048321 337 EAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVV-- 412 (641)
Q Consensus 337 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-- 412 (641)
++.. .-|...+..-..+|...|.+..|+.=+....+.. ..+....--+-..+...|+.+.++...++..+ ||-.
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 5431 2233333333444555555555544444443332 22333333344455555666666655555544 2211
Q ss_pred --HHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCChhhH---HHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 413 --SWTTM---------IAGCALNGEFVEALDLFHQLMELDLRPNRVTF---LAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 413 --~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
.|-.+ +......++|.++++..+...+.......+++ ..+-.++...|.+.+|++...+..+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---- 335 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---- 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh----
Confidence 11111 22345678899999999888876322123333 3444566778999999999998885
Q ss_pred CCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 479 SYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 479 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+.|+ +.++.--.++|.-...+++|+.-|+...
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4565 8888888899999999999999999876
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.7e-05 Score=77.81 Aligned_cols=429 Identities=12% Similarity=0.025 Sum_probs=215.3
Q ss_pred cCCCChhHHHHHhhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHH
Q 048321 86 VKCDRLDCAYKIFDEM---AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADF-VTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 161 (641)
...|+++.|..+|-+. .++|.+.|..-..+|+..|++++|++=-.+-++ +.|+- -.|+-.-.++.-.|++++|.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHH
Confidence 5568888998888763 356888888888889999998888876666655 45653 35777888888888888888
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhc------ccCC-----CCCchhHHHHHHHHhcCCCchHHHH
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCG------IEER-----LRTVVSWNSMVAGCTYGDKFDDSLN 230 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~------~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 230 (641)
.-|..-++.. +.+...++.|.+++... ..+.+.|.. +... ......|..++..+-++.. .+
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~---~l- 162 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT---SL- 162 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH---hh-
Confidence 8888777643 33556777777776111 011111110 0000 0001122222222211100 00
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHhcCC-HHHHHHHH
Q 048321 231 FYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYG-------FDLDVSVINTLISMYSKCGD-IDSARVLF 302 (641)
Q Consensus 231 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 302 (641)
+...+ ...++.+.......+.- .....| ..|.. ......-..++ .++....
T Consensus 163 --------~~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~~k- 221 (539)
T KOG0548|consen 163 --------KLYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERRVK- 221 (539)
T ss_pred --------hcccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCccc----ccCCCCCccchhHHHHHHH-
Confidence 00000 00011110000000000 000000 00100 00000000000 0000000
Q ss_pred hcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCC--c-
Q 048321 303 DGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD--N- 379 (641)
Q Consensus 303 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~- 379 (641)
.-..-...+..+.-+..++..|++.+....+.. -+..-++..-.++...|.+..+...-...++.|... +
T Consensus 222 -----~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 222 -----EKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred -----HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 000112233444444444555555554444432 122222223333444444444443333333332110 0
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 048321 380 ---VMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQA 455 (641)
Q Consensus 380 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 455 (641)
......+..+|.+.++++.|...|.+...+-.. -....+....++++...+...-. .|... -...=...
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNE 367 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHH
Confidence 001111333566667777888777774431100 01122233445555555444432 34432 22222456
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIE 533 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~ 533 (641)
+.+.|++..|...|.+++...+ -|...|..-.-+|.+.|.+.+|+.=.+... ..|+ ...|..-..++....+++
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDP----EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888885433 557788888888888888888887665544 3443 446666666777778899
Q ss_pred HHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
.|.+.+++.++.+|++......+.+++...
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999998877777777777654
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.0001 Score=84.26 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=48.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHH
Q 048321 389 MYSKCGSIGDARELFYALPEKIV-------VSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNR-VTFLAVLQAC 456 (641)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~ 456 (641)
.+...|+.+.|...+.....+.. ..+..+..++...|++++|..++++.... |..++. .+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34446666666666655443211 11334555666677777777777766542 222222 2444455566
Q ss_pred hccCChHHHHHHHHHHHhh
Q 048321 457 THTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~ 475 (641)
...|+.++|...+.++.+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777643
No 110
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=9.8e-06 Score=78.19 Aligned_cols=210 Identities=9% Similarity=-0.004 Sum_probs=127.5
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh--HHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCALNGEF--VEALDL 433 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~ 433 (641)
..++|....+.+++.. +-+..+|+..-.++.+.| ++++++..++.+.+ ++..+|+...-.+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444432 223334443333444444 45666666655543 3344555444444444542 566777
Q ss_pred HHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc---CC----hHHHHH
Q 048321 434 FHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK---GK----LKEALD 505 (641)
Q Consensus 434 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~ 505 (641)
++++.+. .| |..+|.....++.+.|+++++++.++.+++... -+...|+....++.+. |. .+++++
T Consensus 131 ~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 131 TRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----RNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----CchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 7777765 34 344777766777777778888888888775433 3445555555554443 22 245667
Q ss_pred HHHhCC-CCC-ChhHHHHHHHHHHHc----CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC---------------
Q 048321 506 FVQSMP-IKS-DAGIWGTLLCACKIH----LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG--------------- 564 (641)
Q Consensus 506 ~~~~~~-~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------------- 564 (641)
+..++. ..| |...|+.+...+... ++..+|...+.+++..+|+++.++..|+++|+...
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 665543 444 677899888888773 34567888899999999998889999999998743
Q ss_pred ---CchHHHHHHHHH
Q 048321 565 ---RWDGVANIRTMM 576 (641)
Q Consensus 565 ---~~~eA~~~~~~m 576 (641)
..++|.++.+.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 235677777666
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=3.3e-06 Score=91.21 Aligned_cols=199 Identities=10% Similarity=0.050 Sum_probs=156.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-h
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPEK--------IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-V 447 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 447 (641)
+-+...|-..+......+++++|++++++.... -.-.|.++++.....|.-+...++|+++.+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 444567777777788888888888888887651 2357888888777788878888899988874 233 4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC---hhHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLL 523 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~ll 523 (641)
.|..|+..|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++. .-|. .....-.+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~----q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG----QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc----chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 778888888899999999999999988776 667788888899988888888888888754 2232 33444555
Q ss_pred HHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048321 524 CACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVK 582 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~ 582 (641)
..-.++||.++|..+|+.++.-.|.....|..+++.=.+.|..+.++.+|+.....++.
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 56678899999999999999888988888999999888899999999999888876653
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=2.3e-06 Score=76.27 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK 527 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (641)
..+-.++...|+-+....+.......++ .+......++....+.|++.+|+..|++.. .++|...|+.+..+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~----~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP----KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc----ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH
Confidence 3334455555555555555544432222 334444456666666666666666666654 4445666666666666
Q ss_pred HcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 528 IHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.|+.+.|...+.+++++.|+++..+..++-.|.-.|++++|..++.....
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666655544
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=7.8e-07 Score=73.86 Aligned_cols=119 Identities=11% Similarity=-0.010 Sum_probs=99.6
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
-+.+..-.+...+...|++++|..+|+-.. ..| +..-|..|...|...|++++|+..+.++..++|++|.++..++.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345566677788889999999999999876 455 677899999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHH
Q 048321 560 YALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHS 623 (641)
Q Consensus 560 ~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 623 (641)
|...|+.++|++-|+...... + .+|+...+...-+.+...+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHh
Confidence 999999999999999877532 1 3677777776665555544
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=6.2e-06 Score=81.44 Aligned_cols=215 Identities=14% Similarity=0.069 Sum_probs=160.7
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHH
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALR 331 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (641)
.+.|++.+|.-.|+..++.. +-+...|.-|...-..+++-..|+..+.+. .+.|....-+|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46777888888888888776 567788888888888888888888888776 33455677777888999999999999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHhcCcCchHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048321 332 LFFAMEAAGEL--------PDLVTVLSMISGCGQSGALELGKWFDNYAC-SGGLKDNVMVCNALIDMYSKCGSIGDAREL 402 (641)
Q Consensus 332 ~~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (641)
.|+.-+....+ ++..+-.. ........+....++|-.+. ..+..+|+.++..|.-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888654311 00000000 11222223444444544444 455558888999999999999999999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 403 FYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 403 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
|+.... .|...||.|...++...+.++|+..|++.++. +|+-+ ....|.-+|...|.+++|...|-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998765 47789999999999999999999999999985 88876 444556678999999999998887764
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.5e-08 Score=57.64 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=26.0
Q ss_pred cCCCChhHHHHHHHHhHcCCChhHHHHHHhccc
Q 048321 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIE 203 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 203 (641)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.3e-07 Score=56.80 Aligned_cols=33 Identities=39% Similarity=0.637 Sum_probs=25.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 048321 375 GLKDNVMVCNALIDMYSKCGSIGDARELFYALP 407 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 407 (641)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.55 E-value=0.0012 Score=65.09 Aligned_cols=447 Identities=11% Similarity=0.091 Sum_probs=247.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHH
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (641)
-|+.+|+.||+-+... .++++.+.+++|.. +.|. ...|..-+..-...++++..+.+|.+.+..-+. ...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHH
Confidence 3889999999976555 99999999999986 3454 456788888888999999999999999876544 5556555
Q ss_pred HHHhHc-CCChhHH----HHHHhcccCC----CCCchhHHHHHHH---------HhcCCCchHHHHHHHHHHHCCCCC--
Q 048321 183 ISSYAK-CDDLKMA----ELVFCGIEER----LRTVVSWNSMVAG---------CTYGDKFDDSLNFYRHMMYNGFRL-- 242 (641)
Q Consensus 183 l~~~~~-~g~~~~A----~~~~~~~~~~----~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 242 (641)
++---+ .|+...+ .+.|+-.... ..+-..|+..|.- |..+.+++...++|+++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543322 2333332 2222222211 2344456665543 233345555666666665421100
Q ss_pred ----ChhhHHHHHHHh-------cCCCchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 048321 243 ----DVTTVVSLLSSF-------VCPEALVQGRLVHSHGIH--YGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT 309 (641)
Q Consensus 243 ----~~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 309 (641)
|-.+|..-|+.. -+...+..|.++++++.. .|+.....+ .-..|--++..+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~q--------- 236 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQ--------- 236 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHH---------
Confidence 001111111100 011223333333333321 111100000 000000000000
Q ss_pred cchHHHHHHHHHhCCCh--------hHHHHHHHH-HHHcCCCCCHHH-HHHHHH----HhcCcCc-------hHHHHHHH
Q 048321 310 RVSWTAMISGYAQKGDL--------DEALRLFFA-MEAAGELPDLVT-VLSMIS----GCGQSGA-------LELGKWFD 368 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~~~~p~~~t-~~~ll~----~~~~~~~-------~~~a~~~~ 368 (641)
+..|-.+|.--..++-- ....=.+++ |.-.+..|+..- +...+. .+...|+ .+++..++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 00132233221111100 001111111 111223333211 111111 1122222 35566666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD 441 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (641)
+..+..-...+..+|..+.+---..- ..+.....+++... .-..+|-..++.-.+..-...|..+|.++.+.+
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 66655433344445554443221111 13334444444433 233578888888778888899999999999988
Q ss_pred CCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCC--
Q 048321 442 LRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSD-- 515 (641)
Q Consensus 442 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~-- 515 (641)
..+ +....++++.-+| +++.+-|.++|+.-.+.+| .+...-.+.++-+.+.++-..|..+|++.. ..|+
T Consensus 397 r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~----d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG----DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred CCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC----CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 888 4456777777555 4788999999999887776 666777899999999999999999999976 2343
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC----CccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS----AAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
..+|..++..-..-||...+.++-++....-|.+ ...-..+.+-|.=.+.+..-..=++.|
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4599999999999999999999988887766622 123445667777777766555444433
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=1.2e-05 Score=72.24 Aligned_cols=155 Identities=8% Similarity=0.072 Sum_probs=114.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHH
Q 048321 387 IDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGW 466 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 466 (641)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888777655543332221 01223567788888888888762 334457888888999999999999
Q ss_pred HHHHHHHhhhCCCCCCChhHHHHHHHHh-hccCC--hHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 467 AISIIQYDDKGISYNPELDHYSCMADLL-GRKGK--LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 467 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
..|+...+..+ .+...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++
T Consensus 94 ~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 94 LAYRQALQLRG----ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999986433 4577788888864 67777 599999999977 455 667888888899999999999999999
Q ss_pred hHccCCCCCccHH
Q 048321 542 LFKLEPHSAAPYV 554 (641)
Q Consensus 542 ~~~~~p~~~~~~~ 554 (641)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999987654443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=8.1e-06 Score=86.91 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
++..+-.|.....+.|+.++|..+++...+. .||.. ....+...+.+.+.+++|....++.....+ -+.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p----~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS----SSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC----CCHHHHH
Confidence 4677888888888899999999999998885 78776 666677788889999999998888885322 3466777
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.+..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.+.|...|+++++...+-...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 88888889999999999998876 4443 6688888888889999999999999988876543333
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=4.6e-06 Score=84.52 Aligned_cols=207 Identities=10% Similarity=-0.076 Sum_probs=130.0
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
.+...|-...|..+++++. .+...|.+|+..|+..+|..+..+-.+ ||...|..+.+.....--+++|.
T Consensus 407 ll~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHH
Confidence 3344444555555554432 334455555555555555555443332 34455555555444444455555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 432 DLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
++++.-... .-..+.....+.++++++.+.|+...+.++ ....+|-.+..+..+.++++.|.+.|....
T Consensus 478 Elsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np----lq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 478 ELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP----LQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc----cchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 555433221 001111111224666666666666654333 335677777788888889998888888765
Q ss_pred -CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 512 -IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 512 -~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..|| ...|+.+-.+|.+.|+..+|...++++++-+-++...|.+..-+..+.|.|++|.+.+..+.+..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 6665 55899999999999999999999999998887778888888888888999999999888876543
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.2e-06 Score=84.12 Aligned_cols=189 Identities=17% Similarity=0.172 Sum_probs=160.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 375 GLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
+++|-...-..+.+.+.++|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+-.++ +||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 456666777888999999999999999999864 6888899999999999999999888874 889999999999
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 532 (641)
......-+++|+++++....+.. ..+.....+.++++++.+.|+... ..| ...+|..+..+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sarA~----------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQ----------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHH----------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 98888899999999887653311 112233345899999999998854 334 567999998888999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+.|.+.|.+.+.++|++.+.|..++..|.+.|+..+|...+++..+.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999887765
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.1e-05 Score=72.02 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=110.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
..+-..+...|+.+....+........ .-|............+.|++.+|...|.+..... ++|...|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHH
Confidence 445556666677777776666654321 2233344446667777788888888777776533 36777788888888
Q ss_pred hccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 495 GRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.+.|++++|..-|.+.. ...++...+.+...+.-.|+.+.|+.++.++....+.++..-..++-+....|++++|.++
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888877777755 3335667788888888888888888888888887777777888888888888888888877
Q ss_pred HHH
Q 048321 573 RTM 575 (641)
Q Consensus 573 ~~~ 575 (641)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=6.5e-05 Score=73.17 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=56.5
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a 535 (641)
..|.+++|+..++.+....+ -|+..+...++.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|+..+|
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP----DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34555555555555543221 334444444555555555555555555544 3343 33444555555555555555
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHH
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIR 573 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 573 (641)
+..+++...-+|+++..|..|+..|...|+-.+|...+
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555555555555555555555544444444433
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=2.7e-05 Score=75.73 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSC 489 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ 489 (641)
..+--..-.+...|++++|+..++.+... .||...|..+.. .+...++.++|.+.++.+.. ..|+ ....-.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-----l~P~~~~l~~~ 379 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA-----LDPNSPLLQLN 379 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCccHHHHH
Confidence 34444444566789999999999999886 788887776655 88999999999999999996 4466 566677
Q ss_pred HHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 490 MADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
+..+|.+.|++.+|+.++++.. .+.|+..|..|..+|...|+..++... .++.|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 8899999999999999999976 555888999999999999998776554 466788889999
Q ss_pred HHHHHHHHHHhCC
Q 048321 568 GVANIRTMMKRNQ 580 (641)
Q Consensus 568 eA~~~~~~m~~~~ 580 (641)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988887753
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.8e-06 Score=72.96 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
......++..+...|++++|.+.++... .+.+...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4556677788888888888888888865 33366778888888888899999999999999999998999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 048321 562 LGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~ 579 (641)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887764
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00018 Score=64.41 Aligned_cols=175 Identities=12% Similarity=0.011 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN 445 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 445 (641)
.+.+.+.......+......-...|+..|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 33444444443444334444455677888888888888773332332222 33455667788888888888863 35
Q ss_pred hhhHHHHHHHHhc----cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHH
Q 048321 446 RVTFLAVLQACTH----TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIW 519 (641)
Q Consensus 446 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 519 (641)
..|.+.|..++.+ .+.+.+|.-+|+++.++++ |+..+.+-+..+....|++++|..++++.. ...++.+.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 5677666665533 3467777788888776555 777777777777777777777777777765 23345555
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHhHccCCCC
Q 048321 520 GTLLCACKIHL-NIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 520 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~ 549 (641)
..++-.-...| +.+--.+...++....|.+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 55555444445 4455556666666666664
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=1.3e-05 Score=75.13 Aligned_cols=182 Identities=12% Similarity=-0.048 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hh---H
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN---VMVCNALIDMYSKCGSIGDARELFYALPE--KI-VV---S 413 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 413 (641)
.....+......+...|+++.|...++.+.... +.+ ..++..+..+|.+.|++++|...|+.+.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777888899999999999999998754 222 24667788999999999999999999865 22 22 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh
Q 048321 414 WTTMIAGCALN--------GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD 485 (641)
Q Consensus 414 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~ 485 (641)
+..+..++... |++++|.+.|+++... .|+..-....+.... .+.... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-------------~~~~~~-------~~ 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-------------YLRNRL-------AG 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-------------HHHHHH-------HH
Confidence 55556666654 7889999999999986 566532221111110 000000 01
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
....+...|.+.|++++|+..+++.. ..| ....|..+..++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12346677889999999999988865 222 245788889999999999999998888876655
No 128
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=3.1e-05 Score=74.78 Aligned_cols=186 Identities=10% Similarity=0.042 Sum_probs=138.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCC
Q 048321 387 IDMYSKCGSIGDARELFYALPEK---IVVSWTTMIAGCALNG-EFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGF 461 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 461 (641)
-..+.+.++.++|+.+...+.+. +..+|+.-...+...| ++++++..++++.+. .|+. .+|..-...+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 33445567788888888887652 4567777666777777 679999999999986 4544 356555444555565
Q ss_pred --hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc---CC---
Q 048321 462 --LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---LN--- 531 (641)
Q Consensus 462 --~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~---g~--- 531 (641)
.+++..+++.+.+..+ -+...|+...-++.+.|++++|++.++++. ...|...|+.....+.+. |.
T Consensus 122 ~~~~~el~~~~kal~~dp----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 122 DAANKELEFTRKILSLDA----KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred hhhHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 3677888888886433 457788888889999999999999999986 344677888887776554 22
Q ss_pred -HHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHHHHHHHHh
Q 048321 532 -IEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVANIRTMMKR 578 (641)
Q Consensus 532 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~m~~ 578 (641)
.+..+....++++++|+|.++|..++.+|.. .++..+|.++..+...
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3567788889999999999999999999988 3456778888777554
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=5.1e-05 Score=82.38 Aligned_cols=201 Identities=9% Similarity=0.089 Sum_probs=141.5
Q ss_pred CCH-HHHHHHHHHhcCcCchHHHHHHHHHHHH-cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C-ChhHHH
Q 048321 343 PDL-VTVLSMISGCGQSGALELGKWFDNYACS-GGLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-K-IVVSWT 415 (641)
Q Consensus 343 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~ 415 (641)
||+ ..|...|.-....++.+.|+.+.+++++ .++.- -..+|.+++++-..-|.-+...++|++..+ . ....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 4555666666777788888888777765 22221 234677777777777777778888888776 2 345677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++.+-.+ -.-.+....-.+.+-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP--k~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP--KQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc--hhhhHHHHHHHHHHHh
Confidence 8888888888888888888888875 344455777788888888888888888888775322 1112344455666777
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
+.|+.+++..+|+... .+.....|+.++..-.++|+.+.++.+|++++.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888888888888765 33456688888888888888888888888887653
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=7.4e-05 Score=79.72 Aligned_cols=143 Identities=13% Similarity=0.028 Sum_probs=117.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH-HH
Q 048321 376 LKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF-LA 451 (641)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 451 (641)
...+...+..|.......|+.++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+..+. ..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 466788899999999999999999999999876 4 5567888899999999999999999999986 7887754 44
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 524 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 524 (641)
+..++...|.+++|..+|+++.. .+ .-+...+..+..++-..|+.++|...|+... ..|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~-~~---p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR-QH---PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 55588899999999999999995 32 2347889999999999999999999999975 4444445554443
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=9.3e-05 Score=65.65 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTM---IAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
+|..++-+...+|+.+.|...++.+..+-+.++... ..-+-..|++++|+++++...+.+ +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344455556667888888888777654212222111 112445789999999999999875 4466677776767777
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC---CHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL---NIE 533 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g---~~~ 533 (641)
.|+--+|++-+....+.+. .|.+.|.-+.+.|...|+++.|.-.++++. ..| ++..+..+...+...| +.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~----~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFM----NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred cCCcHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7877788888887776644 899999999999999999999999999977 555 6667777777655444 788
Q ss_pred HHHHHHHHhHccCCCCCccHH
Q 048321 534 IGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~ 554 (641)
.+.+.+.+++++.|.+...+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHH
Confidence 999999999999996654433
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=9.2e-06 Score=79.90 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=102.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~ 525 (641)
...+++..+...++++.|..+|+++.+ ..|+ ....++..+...++-.+|.+++++.. ..| +...+......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-----~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE-----RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh-----cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345566777778899999999999885 2354 45557788888888899999998876 334 56667777778
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
|...++++.|+.+++++.++.|++...|..|+.+|...|+|++|.-.++.++
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999998875
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.28 E-value=1.5e-06 Score=53.33 Aligned_cols=35 Identities=31% Similarity=0.585 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADF 141 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 141 (641)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00026 Score=76.46 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
+--+-..|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334444555666677777777777777766666666666655
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00028 Score=63.22 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=115.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC
Q 048321 332 LFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-KI 410 (641)
Q Consensus 332 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~ 410 (641)
+.+.+.......+......-...|...++.+.|.+..... .+..+...=+..+.|..+++-|.+.++.|.+ .+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4444444444444444444445578888888888776551 1223333335567788888999999998888 34
Q ss_pred hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH
Q 048321 411 VVSWTTMIAGCAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486 (641)
Q Consensus 411 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~ 486 (641)
-.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..+++.+..+.. -++.+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~----~dpet 243 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA----KDPET 243 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC----CCHHH
Confidence 5667767776654 35688899999999875 578888999988889999999999999998886554 55677
Q ss_pred HHHHHHHhhccCChHHHH-HHHHhCC
Q 048321 487 YSCMADLLGRKGKLKEAL-DFVQSMP 511 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~-~~~~~~~ 511 (641)
...++-+-...|...++. +.+....
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777776666667665543 3444443
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2e-06 Score=52.72 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCc
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNN 54 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 54 (641)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 8999999999999999999999999999999984
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.0071 Score=59.99 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
.+....+++.+...-...-..+|..+++.-.+..-+..|+.+|.+..+ .++...++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 334444444444322222233455555555555556666666655544 244555555555543 44555666665
Q ss_pred HHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 436 QLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 436 ~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
--... -+|.. -....+.-+.+.++-..++.+|++.... + +.|+ ...|..+++-=+.-|++..+.++-+++
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~--l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-V--LSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-c--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 54443 23332 2233444555556556666666666543 3 3333 455666666666666666665555443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=2.9e-05 Score=65.44 Aligned_cols=114 Identities=9% Similarity=-0.046 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 433 LFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 433 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+|++.... .|+.. ....+...+...|++++|.+.|+.+....+ .+...+..+...+.+.|++++|...++...
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 55543 455566677888999999999998875333 467788888899999999999999988864
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 512 --IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 512 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.+.+...+..+...+...|+++.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34456778888888999999999999999999999986543
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=2.9e-06 Score=51.55 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 048321 106 VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQA 139 (641)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 139 (641)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00025 Score=63.08 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
.|..++-+....|+.+.|...++++... -|.+.-...+-. -+...|.+++|.++++...++.+ .|..++---+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp----t~~v~~KRKl 127 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP----TDTVIRKRKL 127 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc----chhHHHHHHH
Confidence 4555666677889999999999999886 366553333322 34567999999999999997544 5667777777
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC---Cc
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG---RW 566 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~ 566 (641)
..+-..|+.-+|++-+.+.. +..|...|.-|...|...|+++.|.-.+++++=+.|.++-.+..+++++...| +.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 77777888889988887765 77899999999999999999999999999999999999999999999988776 46
Q ss_pred hHHHHHHHHHHhCC
Q 048321 567 DGVANIRTMMKRNQ 580 (641)
Q Consensus 567 ~eA~~~~~~m~~~~ 580 (641)
+-|++++.+..+..
T Consensus 208 ~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 208 ELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777766543
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.3e-06 Score=50.73 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEP 52 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 52 (641)
+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999988
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.019 Score=60.56 Aligned_cols=510 Identities=12% Similarity=0.023 Sum_probs=274.4
Q ss_pred HhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccC---CCCc
Q 048321 30 VNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMA---VRDV 106 (641)
Q Consensus 30 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~ 106 (641)
...+++..|+....++.+. .||. .|..++.+++. .+.|+.++|..+++... ..|.
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl-------------------~r~gk~~ea~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSL-------------------FRLGKGDEALKLLEALYGLKGTDD 77 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHH-------------------HHhcCchhHHHHHhhhccCCCCch
Confidence 4567889999998888764 3444 37777877753 45688899998888764 3377
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSY 186 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 186 (641)
.+...+-.+|...++.++|..+|++... ..|+..-...+..++.+.+++.+-.++--++.+. .+-..+.+=++++.+
T Consensus 78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHH
Confidence 8999999999999999999999999886 4688888889999999998887766665555553 233444443444444
Q ss_pred HcCC----------ChhHHHHHHhcccCCCCCchh---HHHHHHHHhcCCCchHHHHHH-HHHHHCCCCCChhhHHHHHH
Q 048321 187 AKCD----------DLKMAELVFCGIEERLRTVVS---WNSMVAGCTYGDKFDDSLNFY-RHMMYNGFRLDVTTVVSLLS 252 (641)
Q Consensus 187 ~~~g----------~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~ll~ 252 (641)
...- -..-|.+.++.+.+.+....+ ...-...+-..|++++|++++ ....+.-...+...-+.-+.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3221 123466666666663201111 112223456678899999999 44444333344445556677
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------------cCCHHHHHHHHhcCCCC-CcchHHH
Q 048321 253 SFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----------------CGDIDSARVLFDGICDR-TRVSWTA 315 (641)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~ 315 (641)
.+...+++.+..++-.+++..|... |...++.+.+ .+.++...+..++.... .--+|-+
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 7788889999999999888887332 3333332221 22333333333322111 1123333
Q ss_pred HHHH---HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC--CCchh---HHHHHH
Q 048321 316 MISG---YAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDNVM---VCNALI 387 (641)
Q Consensus 316 li~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~---~~~~li 387 (641)
-+.. +..-|+.+++...|-+- -|.+|-.. .=+..|...=..++-..++.......- ..|.. .+...+
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~---~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCA---IDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHH--hCCCcHhH---hhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Confidence 3333 33457777766544322 22222111 111111111111111222222211100 00000 011111
Q ss_pred HHHHhcCCH-----HHHHHHH----hhCCC---------C------C---hhHHHHHHHHHHHcCChH---HHHHHHHHH
Q 048321 388 DMYSKCGSI-----GDARELF----YALPE---------K------I---VVSWTTMIAGCALNGEFV---EALDLFHQL 437 (641)
Q Consensus 388 ~~~~~~g~~-----~~A~~~~----~~~~~---------~------~---~~~~~~li~~~~~~g~~~---~A~~~~~~m 437 (641)
..-.-+|.+ +.-..++ -...+ | + .-+-+.|+..+-+.++.. +|+-+++.-
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 111112211 1111111 11111 1 1 125567788888877755 445555554
Q ss_pred HHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCC
Q 048321 438 MELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKS 514 (641)
Q Consensus 438 ~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 514 (641)
... .|.. .+-..++..|+-.|-+..|.+.|+.+.- .. +.-|...|- +...+...|++..+...++... ...
T Consensus 466 lt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~--IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 466 LTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KN--IQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred hhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HH--hhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 443 3433 3556677888888999999999988763 33 444433332 2244556678777777776644 111
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+..--.-++..-.++|.+..-.++..---.+.-. -...-......+...++.++-.+.++.|+..
T Consensus 540 ~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~ 608 (932)
T KOG2053|consen 540 SLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLP 608 (932)
T ss_pred hhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccC
Confidence 1111112233334567666655553211111110 0112224556677788888888888777743
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=7.3e-05 Score=63.70 Aligned_cols=114 Identities=14% Similarity=-0.037 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh----hHHHHHHHHHHHcCCH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHLNI 532 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~ 532 (641)
.++...+...++.+...++ -.| .....-.+...+...|++++|...|+... ..||. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~--~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYP--SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 5666667666777765544 111 12223334566777777777777777765 22332 2344556667778888
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
++|+..++.. .-.+..+..+..+|++|.+.|++++|...++.
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888887663 22333466777888888888998888888765
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.11 E-value=2.6e-05 Score=77.26 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=45.7
Q ss_pred hhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHH
Q 048321 494 LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
+...|++++|++.|+++. ..| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344455555555555543 222 334455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 048321 572 IRTMMKR 578 (641)
Q Consensus 572 ~~~~m~~ 578 (641)
.+++...
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555443
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=1.4e-05 Score=72.80 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=44.9
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNI 532 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~ 532 (641)
..+.+++++|+..|..+++ +.|+ ...|.--..+|.+.|.++.|++-.+... ..|. ..+|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE-----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh-----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3444555555555555553 2232 3333444455555555555555444433 3332 23555555555555555
Q ss_pred HHHHHHHHHhHccCCCCC
Q 048321 533 EIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~ 550 (641)
++|++.|+++++++|+|.
T Consensus 166 ~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhhhccCCCcH
Confidence 555555555555555543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.0001 Score=72.70 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhcc
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHT 459 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~ 459 (641)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.... .|.. .....-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344556777777899999999999999877777778888888889999999999999975 4543 4555555678899
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
++++.|..+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|
T Consensus 248 ~~~~lAL~iAk~av~-----lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE-----LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH-----hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999986 3454 6799999999999999999999999998
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.08 E-value=2.6e-05 Score=60.89 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=75.7
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+..++..+...|++++|...++.+. ..| +...+..+...+...|+++.|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888888865 333 44677777888888899999999999999999988888899999999999
Q ss_pred CchHHHHHHHHHHhC
Q 048321 565 RWDGVANIRTMMKRN 579 (641)
Q Consensus 565 ~~~eA~~~~~~m~~~ 579 (641)
++++|.+.++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988876543
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.00076 Score=72.95 Aligned_cols=237 Identities=10% Similarity=0.012 Sum_probs=152.2
Q ss_pred CCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCCh-hHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHH
Q 048321 137 IQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNS 214 (641)
Q Consensus 137 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 214 (641)
..|+ ...+..|+..+...++++++.++.+...+.. |+. ..|-.+...+...++.+.+..+ .
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 3443 3457778888888888888888888666543 332 3333333366666665555444 2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048321 215 MVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 294 (641)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 294 (641)
++.......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222333333343333333444442 2344577788888889999999999999999888 77888999999999988 9
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc
Q 048321 295 IDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSG 374 (641)
Q Consensus 295 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (641)
+++|..++.+. +..|...+++..+.+++.++... .|+.+.+ -.++.+.+...
T Consensus 165 L~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~ 216 (906)
T PRK14720 165 KEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhh
Confidence 99998887654 34477777888888888888775 3333222 22223333321
Q ss_pred -CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 048321 375 -GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCA 422 (641)
Q Consensus 375 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 422 (641)
|..--..++-.+-..|.+.++++++..+|+.+.+ .|.....-++..|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3333445566677778888888888888887765 34455566666665
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=2.8e-06 Score=64.58 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=54.3
Q ss_pred cCChHHHHHHHHhCC-CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 497 KGKLKEALDFVQSMP-IKS---DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.|++++|+.+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456666766666654 222 344566677777788888888888877 667777667777778888888888888888
Q ss_pred HHH
Q 048321 573 RTM 575 (641)
Q Consensus 573 ~~~ 575 (641)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=1.3e-05 Score=58.32 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC-CchHHHHHHHHHHh
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG-RWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~m~~ 578 (641)
++.+|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688889999999999999999999999999999999999999999999 79999999987764
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00043 Score=65.93 Aligned_cols=152 Identities=11% Similarity=0.047 Sum_probs=110.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHhccCChHHHHHHHHHHHhhhCCCCCCChhH-----------
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ--ACTHTGFLEKGWAISIIQYDDKGISYNPELDH----------- 486 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~----------- 486 (641)
++.-.|++++|.+.--..++. .++. .+..+++ ++...++.+.|...|++.++ +.|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHH
Confidence 455678888888776666653 2222 2222222 44556778888888887774 3354332
Q ss_pred --HHHHHHHhhccCChHHHHHHHHhCC-CCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 487 --YSCMADLLGRKGKLKEALDFVQSMP-IKS-----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 487 --~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+.-=.+-..+.|++.+|.+.+.+.. +.| +...|........+.|+.++|+..-+.+++++|.-..+|...++
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 2222345678999999999999976 444 44456556666778999999999999999999998999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 048321 559 KYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 559 ~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++...++|++|.+.+++..+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999887764
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=8.3e-05 Score=60.98 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHH
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMA 557 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 557 (641)
.+..++..+.+.|++++|.+.|..+. ..|+ ...+..+...+...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555566666666666666554 2222 2244455566666666777777777666666654 34566666
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048321 558 NKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|...|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6777777777777766666554
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=1.9e-05 Score=56.47 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=50.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999888654
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.5e-05 Score=47.12 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGI 137 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 137 (641)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=1.8e-05 Score=57.28 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999887665
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0001 Score=67.91 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
-|.+.|..|...|.+.|+++.|..-|.+.. ..+++..+..+..++.... +..++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 579999999999999999999999999976 4556778888887764432 67899999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+-.+...|++.+|...++.|.+...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998653
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.88 E-value=0.00033 Score=58.71 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=80.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
.-....-+-..|++++|..+|.-+. ..-|..-|..|...|...++++.|+..+..+..++++||.++...+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344555668999999999998865 33467788899999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHh
Q 048321 565 RWDGVANIRTMMKR 578 (641)
Q Consensus 565 ~~~eA~~~~~~m~~ 578 (641)
+.++|+.-++...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988775
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=1.8e-05 Score=46.68 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDI 50 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 50 (641)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 899999999999999999999999999875
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.00096 Score=56.80 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh--hH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL--DH 486 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~--~~ 486 (641)
.|..++..+ ..++...+...++.+... .|+. .....+...+...|++++|...|+.+....+ .|.. ..
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---d~~l~~~a 87 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP---DPELKPLA 87 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CHHHHHHH
Confidence 344444444 367777777777777765 3333 1233344566777788888888777774321 1221 23
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMPI-KSDAGIWGTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
.-.+..++...|++++|+..++.... ...+..+..+...+...|+.++|...|+++
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34456777777888888888776542 223445566667777888888888877765
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.034 Score=53.82 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChH
Q 048321 384 NALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 463 (641)
+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-.++... +-+++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566677788888888887778888888888888888888776654332 223467777778888888877
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
+|..+...+. +.--+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-------------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-------------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-------------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7776654421 13456777788888777666444
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00011 Score=67.09 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=79.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhc
Q 048321 419 AGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGR 496 (641)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 496 (641)
.-+.+.+++.+|+..|.+.++. .|+. +-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|.-+|..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-----iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-----IDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHc
Confidence 4467789999999999999985 6655 4555667799999999999999888875 4565 6789999999999
Q ss_pred cCChHHHHHHHHhCC-CCCChhHHHH
Q 048321 497 KGKLKEALDFVQSMP-IKSDAGIWGT 521 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~-~~p~~~~~~~ 521 (641)
.|++++|++.|++.. +.|+..+|..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999999977 8887776644
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00024 Score=70.50 Aligned_cols=105 Identities=10% Similarity=-0.082 Sum_probs=67.9
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|...|..+++..+ .+...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34455666666666666664322 335556666666667777777777666654 333 455677777777777888
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
++|+..++++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888887777666666554444
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.81 E-value=0.00079 Score=69.76 Aligned_cols=138 Identities=14% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhcc--------CChHHHHHHHHHHHh
Q 048321 409 KIVVSWTTMIAGCALN-----GEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHT--------GFLEKGWAISIIQYD 474 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 474 (641)
.|...|...+.+.... +....|..+|++..+. .|+.. .+..+..++... ..+..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4556666666664332 2356788888888875 67754 333332222111 011222222222211
Q ss_pred hhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 475 DKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 475 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
... ...+...|.++.-.+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 413 l~~--~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPE--LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccc--CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 101 11222334444433334455555555555443 334444444444445555555555555555555555443
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00028 Score=57.80 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=62.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHH
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTL 522 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 522 (641)
+..+...+...|++++|...|..+....+ -.| ....+..++.++.+.|++++|...++.+. ..|+ ..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYP--KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 33444455556666666666666654322 111 12344556666667777777777766654 2232 3456666
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
...+...|+.+.|...++++++..|+++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777888888888888888888876443
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.00073 Score=64.57 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQA-CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~----~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP----SDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT----T-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC----CCHHHHHHH
Confidence 468888888888888999999999998542 2233445444443 3445777779999999998877 788889999
Q ss_pred HHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
++.+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+....+.+++.+.-|++
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999976 2232 2489999999999999999999999999988874
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.0007 Score=59.64 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN--RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
...+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+....+..+ .+...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHH
Confidence 34566677777777888888888887776432222 23566666677777888888887777775322 2345555
Q ss_pred HHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 489 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
.++.+|...|+...+..-+... ...+++|.+.++++++++|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666655544332221 123577888888999988876 5556666655554
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.00022 Score=62.78 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
...+..++..+.+.|++++|...|++.. ..|+ ...+..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3346666677777788888888877754 2222 3577788888899999999999999999999998888989999
Q ss_pred HHHhcCC
Q 048321 559 KYALGGR 565 (641)
Q Consensus 559 ~~~~~g~ 565 (641)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988877
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.0002 Score=62.88 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=75.6
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
...|..++..+...|++++|+..|++.. ..|+ ..+|..+...+...|+.++|+..+++++.++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556777778888899999999888864 2222 3478888899999999999999999999999998888889999
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 048321 559 KYA-------LGGRWDGVANIRTMM 576 (641)
Q Consensus 559 ~~~-------~~g~~~eA~~~~~~m 576 (641)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666554
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00033 Score=54.36 Aligned_cols=89 Identities=17% Similarity=0.037 Sum_probs=44.9
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|...++.+.+..+ .+...+..+...+...|++++|.+.++... .+.+..++..+...+...|++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDP----DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444455555555544443211 122334444455555555555555555433 222334555556666666666
Q ss_pred HHHHHHHHHhHccCC
Q 048321 533 EIGEYVAYCLFKLEP 547 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p 547 (641)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.68 E-value=0.065 Score=52.36 Aligned_cols=420 Identities=12% Similarity=0.057 Sum_probs=229.6
Q ss_pred CCCChhHHHHHhhccCCC---C------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--hccC
Q 048321 87 KCDRLDCAYKIFDEMAVR---D------VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAA--IHAK 155 (641)
Q Consensus 87 ~~~~~~~A~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~ 155 (641)
+.+++.+|.++|.++-.. + .+.-+.+|++|..+ +.+.....+....+. .| ...|..+..++ -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 456777777777766422 1 22345667777654 344444444444432 23 34455555553 3566
Q ss_pred ChhHHHHHHHHHHHH--cC------------CCChhHHHHHHHHhHcCCChhHHHHHHhcccCC------CCCchhHHHH
Q 048321 156 HLSLLKSVHSFGIHI--GV------------DADVSVCNTWISSYAKCDDLKMAELVFCGIEER------LRTVVSWNSM 215 (641)
Q Consensus 156 ~~~~a~~~~~~~~~~--~~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~l 215 (641)
.+..|.+.+..-... +. -+|...-+..++.+...|++.+++.+++++... .-+..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777766655443 21 123334456667778888888888888877664 2467777774
Q ss_pred HHHHhcC--------CC-------chHHHHHHHHHHHC------CCCCChhhHHHHHHHhcCCC--chHHHHHHHHHHHH
Q 048321 216 VAGCTYG--------DK-------FDDSLNFYRHMMYN------GFRLDVTTVVSLLSSFVCPE--ALVQGRLVHSHGIH 272 (641)
Q Consensus 216 i~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~ 272 (641)
+-.+.+. .. ++.++-..++|... .+.|....+..++....-.. ++.--.+++..-..
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 4333321 11 22223333333221 24455555666665544322 23333444444444
Q ss_pred hCCCCch-hHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 048321 273 YGFDLDV-SVINTLISMYSKCGDIDSARVLFDGI--------CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELP 343 (641)
Q Consensus 273 ~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 343 (641)
.-+.|+- -+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++...++.++...|-..+.-+.-. .|
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 4444543 344455555554 445554444333 2233457888888899999999998888766543 33
Q ss_pred CHHHH-------HHHHHHhc-Cc---CchHHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCC-HHHHHHHHhhCCC-
Q 048321 344 DLVTV-------LSMISGCG-QS---GALELGKWFDNYACSGGLKDNVMVCN--ALIDMYSKCGS-IGDARELFYALPE- 408 (641)
Q Consensus 344 ~~~t~-------~~ll~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~-~~~A~~~~~~~~~- 408 (641)
+...- ..+.+..+ .- -++..-..+|+.+....+....-+.. --..-+.+.|. -++|..+++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 33211 11111112 11 12233344555555544332211111 11233455555 7788888887765
Q ss_pred --CChhHHHHHHH----HHHHc---CChHHHHHHHHHHHHcCCCCChh----hHHHHHH--HHhccCChHHHHHHHHHHH
Q 048321 409 --KIVVSWTTMIA----GCALN---GEFVEALDLFHQLMELDLRPNRV----TFLAVLQ--ACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 409 --~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~--~~~~~g~~~~a~~~~~~~~ 473 (641)
.|..+-|.... +|.+. .....-+.+-+-..+.|+.|-.+ .-+.+.. -+...|++.++.-.-..+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45544443322 23221 22333344444455678777543 3333433 3456789998877766666
Q ss_pred hhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHH
Q 048321 474 DDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT 521 (641)
Q Consensus 474 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 521 (641)
+ +.|++.+|..++-++....+++||.+++.++| |+..++++
T Consensus 490 ~-----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 490 K-----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred H-----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 4 77999999999999999999999999999987 56556554
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.64 E-value=0.00015 Score=53.29 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=51.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999998887653
No 172
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.63 E-value=2.4e-05 Score=46.95 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.9
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCCchHHHH
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
++++++++|+|+.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.003 Score=55.42 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN--RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++......+ .....+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~----~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP----FLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHH
Confidence 34667777777778888888888888876532221 23666777778888888888888887775322 2234455
Q ss_pred HHHHHhh-------ccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 489 CMADLLG-------RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 489 ~l~~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
.+...+. +.|++++|+. .+++|..+++++++.+|++ +......+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~---~~~~~~~~~ 162 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN---YIEAQNWLK 162 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc---HHHHHHHHH
Confidence 5555555 2333333222 2345666777788887764 234444455
Q ss_pred hcCCc
Q 048321 562 LGGRW 566 (641)
Q Consensus 562 ~~g~~ 566 (641)
..|++
T Consensus 163 ~~~~~ 167 (168)
T CHL00033 163 ITGRF 167 (168)
T ss_pred HhcCC
Confidence 55554
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=9.5e-05 Score=52.85 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 490 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+...+.+.|++++|.+.|++.. ..| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999998876 445 566888888999999999999999999999999864
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.57 E-value=0.16 Score=53.99 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCCChhHHHHHhhccCCC-CcccHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 048321 87 KCDRLDCAYKIFDEMAVR-DVASWNAMLVGF--AQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV 163 (641)
Q Consensus 87 ~~~~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 163 (641)
..+++..|....+.+.++ .-..|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 345666676666665422 122455555554 4577777777777776655433 666777777777777777777777
Q ss_pred HHHHHHHcCCCChhHHHHHHHHhHcCCChhH----HHHHHhcccC
Q 048321 164 HSFGIHIGVDADVSVCNTWISSYAKCDDLKM----AELVFCGIEE 204 (641)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~ 204 (641)
++++.+. .|+......+..+|.+.+++.. |.+++...++
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 7777664 3556666666677777766643 4555554443
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.008 Score=55.93 Aligned_cols=171 Identities=9% Similarity=-0.035 Sum_probs=105.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCh-h---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHh
Q 048321 386 LIDMYSKCGSIGDARELFYALPE--KIV-V---SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACT 457 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~ 457 (641)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...|++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888765 222 1 2234556777888888888888888875 3443 34444444433
Q ss_pred c--cC---------------C---hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChh
Q 048321 458 H--TG---------------F---LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAG 517 (641)
Q Consensus 458 ~--~g---------------~---~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 517 (641)
. .+ + ..+|...|+.+++.++ ...-..+|...+..+...--..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP------------------~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP------------------NSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc------------------CChhHHHHHHHHHHHHHHHHHH
Confidence 2 10 1 2234455555554332 2233344444333322000000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
- ......|.+.|.+.-|..-++.+++--|+. .++...+++.|...|..++|.++...+.
T Consensus 178 e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 E-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 134456788999999999999999988874 4567788999999999999999887654
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.011 Score=50.13 Aligned_cols=132 Identities=8% Similarity=-0.053 Sum_probs=99.9
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC---ChhH
Q 048321 443 RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGI 518 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~ 518 (641)
.|+...-..+..+....|+..+|...|++.. ... +.-|....-.+..+....+++.+|...+++.- .+| .+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 5666666677778888888888888888876 333 45667777777788888888888888887753 222 2334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
...+...+...|.++.|+..|+.++.-.|+ +..-...+..+.++|+.+||..-...+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455677888899999999999999998887 77888889999999999988776555443
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.0001 Score=53.31 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 497 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
.|++++|+++|+++. .+.+..++..+..+|...|++++|...++++...+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 444444444444443 222344444455555555555555555555555555543333
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0029 Score=65.65 Aligned_cols=134 Identities=13% Similarity=0.003 Sum_probs=97.1
Q ss_pred CCCCChhhHHHHHHHHhcc-----CChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhcc--------CChHHHHHH
Q 048321 441 DLRPNRVTFLAVLQACTHT-----GFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRK--------GKLKEALDF 506 (641)
Q Consensus 441 g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~ 506 (641)
+.+.|...|..++.+.... +..+.|..+|+++.+ ..|+ ...|..+..++... ++++.+.+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3455667888888865432 237799999999996 4566 44455444333221 223455555
Q ss_pred HHhCC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 507 VQSMP----IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 507 ~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..... .+.++..+.++.......|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55532 2335567777777777789999999999999999995 7899999999999999999999998877654
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.48 E-value=0.00037 Score=52.84 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH
Q 048321 424 NGEFVEALDLFHQLMELDLR-PNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 502 (641)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+..+ .+......++.++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHhCCHHH
Confidence 35555666666665554210 1222333345555555555555555555 21111 112222333455555555555
Q ss_pred HHHHHH
Q 048321 503 ALDFVQ 508 (641)
Q Consensus 503 A~~~~~ 508 (641)
|++.++
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.079 Score=54.42 Aligned_cols=217 Identities=12% Similarity=0.035 Sum_probs=118.7
Q ss_pred ccCchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhccCCchHHhHHHHHH
Q 048321 2 AVSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQN-DIEPNNLTFPFIAKACAKLSDLIYSQMIHGHI 80 (641)
Q Consensus 2 a~~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~ 80 (641)
.+++|.+..+..|+| . .|..+...-...-.++-|...|-+.... |++ ....| +.+|..-
T Consensus 678 gledA~qfiEdnPHp--r-LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl-------------~~i~s~~ 737 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHP--R-LWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRL-------------RTIHSKE 737 (1189)
T ss_pred chHHHHHHHhcCCch--H-HHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHh-------------hhhhhHH
Confidence 466777777766654 2 5666666555555555555554433221 111 00000 0111111
Q ss_pred hhccC--cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHhcc
Q 048321 81 VKSPF--VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD----FVTVMGLTQAAIHA 154 (641)
Q Consensus 81 ~~~~~--~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~ 154 (641)
.+..- +-.|++++|.+++-.+.++|.. |..+.+-|++-.+.++++.= |-..| ...|+.+-..+...
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHH
Confidence 11000 3458999999999999888753 56677778887777766531 11111 23466666666666
Q ss_pred CChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHH
Q 048321 155 KHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRH 234 (641)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (641)
..++.|.+.+...-. ....+.++.+..++++-+.+-..+++ +....-.+...+...|.-++|.+.|-+
T Consensus 810 ~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 666776666654321 12345666666666666666666655 455566677777777777777776643
Q ss_pred HHHCCCCCChhhHHHHHHHhcCCCchHHHHHHH
Q 048321 235 MMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 235 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
- +. | ...+..|...+++.+|.++-
T Consensus 878 ~---s~-p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 878 R---SL-P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred c---cC-c-----HHHHHHHHHHHHHHHHHHHH
Confidence 2 11 1 12334455555555555443
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.46 E-value=0.00025 Score=51.38 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC-CHHHHHHHHHHhHccCC
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL-NIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 547 (641)
+...|..++..+.+.|++++|+..|++.. ..| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35677888888888999999999888866 444 5668888888999999 79999999999999988
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.035 Score=56.31 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=100.2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 048321 267 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV 346 (641)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 346 (641)
++++.+.|-.|+... +...++-.|++.+|-++|.+ +|....|+++|.+|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 445566665566543 33445667888888888754 56666777777766421
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 426 (641)
-..+-+...|..++-..+.+.-.+. ..+..-=.+...++...|+.++|..+ +..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccH
Confidence 1223334444444433333322210 00100112334555666766666543 233444
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHH
Q 048321 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDF 506 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 506 (641)
.+.++++-+++-. .+..+...+..-+.+...+.-|-++|..|-. ...++++....+++++|..+
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------------~ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD------------LKSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc------------HHHHhhheeecccchHhHhh
Confidence 4444444444432 2334555555555566667777778877653 23467788888888888888
Q ss_pred HHhCC-CCCCh
Q 048321 507 VQSMP-IKSDA 516 (641)
Q Consensus 507 ~~~~~-~~p~~ 516 (641)
-++.| ..||+
T Consensus 796 Ae~hPe~~~dV 806 (1081)
T KOG1538|consen 796 AEKHPEFKDDV 806 (1081)
T ss_pred hhhCccccccc
Confidence 88877 55554
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.0043 Score=52.57 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--CCccHH
Q 048321 480 YNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--SAAPYV 554 (641)
Q Consensus 480 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~ 554 (641)
+.|++..--.|...+.+.|+..||...|++.. +--|......+..+....++...|...++.+.+-+|. .|....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 67999999999999999999999999999976 5668888999999999999999999999999999885 577889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.++.+|...|++++|+.-++...+.-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 99999999999999999999887643
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.39 E-value=0.14 Score=49.08 Aligned_cols=281 Identities=19% Similarity=0.158 Sum_probs=182.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhcC---CCCCcchHHHHHHH--HHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 048321 282 INTLISMYSK--CGDIDSARVLFDGI---CDRTRVSWTAMISG--YAQKGDLDEALRLFFAMEAAGELPDLV--TVLSMI 352 (641)
Q Consensus 282 ~~~li~~~~~--~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll 352 (641)
|.+|-.++.. .|+-..|.+.-.+- ...|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 4444444333 45666666655433 23344444444432 34478999999999998752 3322 233444
Q ss_pred HHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChh--HHHHHHHHHH---
Q 048321 353 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVV--SWTTMIAGCA--- 422 (641)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~--- 422 (641)
-..-+.|+.+.|.++-+..-..- +.-...+.+.+...|..|+++.|+++.+.-.. +++. .--.|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44567888888888887776543 33456788899999999999999999986543 4432 1112222111
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
-.-+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.+++.+-+ ..|.+..+.. ..+.|.|+.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-----~ePHP~ia~l--Y~~ar~gdt- 310 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-----AEPHPDIALL--YVRARSGDT- 310 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-----cCCChHHHHH--HHHhcCCCc-
Confidence 12345666666555554 578876 444455689999999999999999885 3455555443 334566653
Q ss_pred HHHHHHHhCC----CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc-CCchHHHHHHHH
Q 048321 502 EALDFVQSMP----IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG-GRWDGVANIRTM 575 (641)
Q Consensus 502 ~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~ 575 (641)
+++-+++.. .+| +..+..++..+-...|++..|..-.+.+....|. .+.|.+|+++-... |+-.++...+-+
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 222222221 345 4557777888888999999999999999999998 78999999997765 998888888766
Q ss_pred HHh
Q 048321 576 MKR 578 (641)
Q Consensus 576 m~~ 578 (641)
...
T Consensus 389 av~ 391 (531)
T COG3898 389 AVK 391 (531)
T ss_pred Hhc
Confidence 543
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0012 Score=63.37 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKT 596 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~ 596 (641)
.++..|...|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 456777778889999999999999999999999999999999999999999999999998863
Q ss_pred EEEeeCCCCCCChhcHHHHHHHHHHHHHH
Q 048321 597 CTFTAEDRYHAESELTYPVLDCLALHSRE 625 (641)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 625 (641)
.|.+..|...|..+.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 67788888888887776654
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0026 Score=49.23 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCC--------hhHHHHHHHHHHHHcCCCChhHHH
Q 048321 110 NAMLVGFAQMGFLENVLRLFYNMRLVGI-QADFVTVMGLTQAAIHAKH--------LSLLKSVHSFGIHIGVDADVSVCN 180 (641)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 180 (641)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++..- .-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 9999999999999876532 345667888999999999999999
Q ss_pred HHHHHhHc
Q 048321 181 TWISSYAK 188 (641)
Q Consensus 181 ~ll~~~~~ 188 (641)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98877654
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.18 Score=48.91 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHH
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC 526 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 526 (641)
.+.+..+.-|...|....|.++-. ++. .|+...|...+.+|+..|+|++-.++... +..+..|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFK---VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH
Confidence 466666777788898888877754 443 48999999999999999999998887654 34568899999999
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
...|+..+|..+..++ .+...+..|.+.|.|.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888771 1256789999999999998875443
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.056 Score=51.67 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHH
Q 048321 393 CGSIGDARELFYALPE---KIVVSWTTMIAG--CALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 465 (641)
.|+-..|.+.-.+..+ .|....-.++.+ -.-.|+++.|.+-|+-|.. .|... -...|.-.-.+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 4555555555444332 233333233322 2235777777777777765 23221 233333344566777777
Q ss_pred HHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCChh--HHHHHHHH---HHHcCCHHHH
Q 048321 466 WAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSDAG--IWGTLLCA---CKIHLNIEIG 535 (641)
Q Consensus 466 ~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~--~~~~ll~~---~~~~g~~~~a 535 (641)
+++-+..... -|. .-.+.+.+...+..|+++.|+++++.-. ..++.. .-..|+.+ -....+...|
T Consensus 174 r~yAe~Aa~~-----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 174 RHYAERAAEK-----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHhh-----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 7776666542 233 4456667777777777777777776643 444433 11222222 1233467777
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.....+..++.|+-...-+.-+..|.+.|+..++..+++.+=+.
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 77888888888887777777778888888888888887776543
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.30 E-value=0.0015 Score=61.14 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHH
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMA 557 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 557 (641)
.|..-+..+.+.|++++|...|+... ..|+. ..+.-+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455677777777776655 33432 355566677777788888888888887776664 44555667
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048321 558 NKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888887777654
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0031 Score=62.73 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCCC----CCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERL----RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSL 250 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (641)
+......+++......+++.+..++-+....+ .-..+.+++|+.|.+.|..++++.+++.=..-|+-||.+|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33344444555555555555655555444331 11344568888888888888888888888888988999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048321 251 LSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC 292 (641)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 292 (641)
|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999888888887666666666555555555
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.25 E-value=0.01 Score=49.78 Aligned_cols=90 Identities=7% Similarity=-0.105 Sum_probs=51.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHHHHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKI 528 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~ 528 (641)
+..-+...|++++|..+|+.+.. +.|. ...|-.|.-++-..|++++|++.|.... . +.|+..+-.+..++..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~-----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI-----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33344555666666666666553 2233 4445556666666666666666666643 2 2344555566666666
Q ss_pred cCCHHHHHHHHHHhHccC
Q 048321 529 HLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~ 546 (641)
.|+.+.|++.|+.++..-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 666666666666666543
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.24 E-value=0.0046 Score=47.92 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcC--------chHHHHHHHHHHHHcCCCCchhHH
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGE-LPDLVTVLSMISGCGQSG--------ALELGKWFDNYACSGGLKDNVMVC 383 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 383 (641)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999866543 345667889999999999999999
Q ss_pred HHHHHHHHh
Q 048321 384 NALIDMYSK 392 (641)
Q Consensus 384 ~~li~~~~~ 392 (641)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.03 Score=53.90 Aligned_cols=99 Identities=15% Similarity=-0.017 Sum_probs=63.6
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHH--HHHcCCHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCA--CKIHLNIEI 534 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~ 534 (641)
.+.|.+..|.+.|...+...+.+.+|+...|.....+..+.|++++|+.-.+....-.+..++..+..+ +...+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777775444445666677777777788888888888877776522122233333333 445678888
Q ss_pred HHHHHHHhHccCCCCCccHHHH
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l 556 (641)
|.+.++++.+.+.+ ...-..+
T Consensus 340 AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred HHHHHHHHHhhccc-cchHHHH
Confidence 88888888877654 3433333
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.20 E-value=0.0013 Score=64.69 Aligned_cols=65 Identities=14% Similarity=-0.056 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP---YVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777777776643 777777777777777777777666653
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.19 E-value=0.0093 Score=59.40 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHH
Q 048321 342 LPDLVTVLSMISGCGQSGALELGKWFDNYACSG--GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KIVVSWT 415 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 415 (641)
+.+...+..++..+....+++.+..++-..... ....-+.+..++|+.|.+.|..+.+..+++.=.. +|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566665555566665555555442 1112233344666666666666666666655433 5556666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544555555544444443
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.17 E-value=0.0069 Score=58.19 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCChh--hHHHHHHHHhcc-CChHHHHHHHHHHHhhhCCCCCCC---
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLME----LDLRPNRV--TFLAVLQACTHT-GFLEKGWAISIIQYDDKGISYNPE--- 483 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~p~--- 483 (641)
|......|.+. ++++|++.+++..+ .| .|+.. .+..+...|... |++++|.+.|++..+-+. ....
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~--~e~~~~~ 153 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE--QEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH--HTT-HHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HCCChhh
Confidence 33344444333 66666666666543 22 33332 555666678888 899999999999886544 2222
Q ss_pred -hhHHHHHHHHhhccCChHHHHHHHHhCC---C-----CCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 484 -LDHYSCMADLLGRKGKLKEALDFVQSMP---I-----KSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 484 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
...+..++..+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|.+.+++....+|.-..
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3456677889999999999999998854 1 11111 2222333456679999999999999999986433
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.00057 Score=44.04 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
.+|..+..++...|++++|+++++++++.+|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988887764
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.0031 Score=50.87 Aligned_cols=85 Identities=15% Similarity=-0.060 Sum_probs=57.3
Q ss_pred HHHhhccCChHHHHHHHHhCC-C---CCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHh
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-I---KSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYAL 562 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 562 (641)
..++-..|+.++|+.+|++.. . .++ ...+-.+.++++..|++++|..++++...-.|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 345556667777777776644 1 111 224556677788888888888888888777676 55566667778888
Q ss_pred cCCchHHHHHHHH
Q 048321 563 GGRWDGVANIRTM 575 (641)
Q Consensus 563 ~g~~~eA~~~~~~ 575 (641)
.|+++||.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 8888888876644
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.14 E-value=0.012 Score=56.35 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGE-LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
+|..++...-+.+..+.|..+|.+.++.+. ..+.......+. +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 466666666666667777777777664321 122222222222 23345666677777777764 356677777788888
Q ss_pred HhcCCHHHHHHHHhhCCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 391 SKCGSIGDARELFYALPE--K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.+.++.+.|+.+|++... + -...|...+..-.+.|+.+.+.++.+++.+. -|+...+..+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 888888888888887665 1 2247777777777788888888888777774 455444444444
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0013 Score=48.15 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
..|.+.+++++|+++++.+. ..| ++..|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56778889999999998876 444 5667888888889999999999999999999998655443
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.014 Score=47.08 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=64.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHH
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADL 493 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 493 (641)
+..++-..|+.++|+.+|++....|..... ..+..+.+.+...|++++|..+++.....++ -.+ +......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p--~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP--DDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHH
Confidence 445667789999999999999988866543 3666677788889999999999998886543 111 12222334456
Q ss_pred hhccCChHHHHHHHHh
Q 048321 494 LGRKGKLKEALDFVQS 509 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~ 509 (641)
+...|+.++|++.+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 7788888888887654
No 203
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.57 Score=49.03 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=92.6
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHH
Q 048321 441 DLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWG 520 (641)
Q Consensus 441 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 520 (641)
|..-...+.+--+.-+...|...+|.++-.+.. -||...|..-+.+++..+++++-+++-+++. .+.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-------ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-------IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCch
Confidence 333444566666777888899999988866543 5899999999999999999999988888765 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
-...+|.+.|+.++|.+++-+.-.+ .-.+.+|.+.|++.||.+.-=+
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 8899999999999999887654332 2678999999999999987533
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.99 E-value=0.0061 Score=53.54 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=82.5
Q ss_pred hHHhccc--CCCChhhhHHHHHHHHHh-----CCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHH
Q 048321 7 PPRLNRI--YRSSTINQWNSQIREAVN-----KNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGH 79 (641)
Q Consensus 7 ~~~f~~~--~~~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~ 79 (641)
...|+.. ..++-. +|..+|..|.+ +|.++=....+..|.+-|+.-|..+|+.||..+-+ |.+
T Consensus 34 ~~~f~~~~~~~k~K~-~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f--------- 102 (228)
T PF06239_consen 34 EELFERAPGQAKDKA-TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF--------- 102 (228)
T ss_pred HHHHHHHhhccccHH-HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------
Confidence 3455554 445666 78888888775 36666667778888888998899999998887743 111
Q ss_pred HhhccCcCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh-h
Q 048321 80 IVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL-S 158 (641)
Q Consensus 80 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~ 158 (641)
..+| .+.++-.-| -.+-+-|++++++|...|+.||..|+..++..+++.+.. .
T Consensus 103 ----------------------vp~n--~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 103 ----------------------VPRN--FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred ----------------------cccc--HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHH
Confidence 0000 111111111 234577899999999999999999999999999876542 3
Q ss_pred HHHHHHHHHHH
Q 048321 159 LLKSVHSFGIH 169 (641)
Q Consensus 159 ~a~~~~~~~~~ 169 (641)
...++.=+|.+
T Consensus 157 K~~rmmYWmpk 167 (228)
T PF06239_consen 157 KYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHH
Confidence 33444434433
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.048 Score=49.17 Aligned_cols=139 Identities=10% Similarity=0.005 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCch-----hHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNV-----MVCNAL 386 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 386 (641)
..+.++..+...|.+.-.+.++++.++.....++.....+.+.-.+.|+.+.|...++...+..-..+. .+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 446677777788889999999999998777778888888888889999999999999988764333333 333334
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 387 IDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAV 452 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 452 (641)
...|.-.+++..|...|.++.. .|++.-|.-.-++.-.|+..+|++..+.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4456667888999999988776 35566666555566678999999999999986 5655544433
No 206
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.95 E-value=0.29 Score=47.03 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhcCcCchHHHHHHHHHHHHc--CCCCc--hhHH
Q 048321 314 TAMISGYAQKGDLDEALRLFFAMEAAGEL-----PDLV-TVLSMISGCGQSGALELGKWFDNYACSG--GLKDN--VMVC 383 (641)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~ 383 (641)
..+...+.+.|++++|.++|++....... .+.. .|...+-.+...|+...|...++..... ++..+ ..+.
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34455566666777777777666543221 1111 1222222344456666666666665542 22222 3455
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhCCCCCh
Q 048321 384 NALIDMYSK--CGSIGDARELFYALPEKIV 411 (641)
Q Consensus 384 ~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 411 (641)
..|+++|-. ...++.|..-|+.+.+-|.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 556666643 3456777777777776554
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.087 Score=47.59 Aligned_cols=176 Identities=9% Similarity=-0.068 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEK--I--------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAV 452 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 452 (641)
+++|.+.+.-..-+++-...|+.-..+ . ...-+.++..+.-.|.+.-.+.++++.++..-+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555554444444444444433221 1 234456777777788899999999999987545566777788
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCC--CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHH
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGI--SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI 528 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~ 528 (641)
.+.-.+.|+.+.|...|+...+..+. ++.-..-....+...|.-+.++.+|...+.+++ ..| |+...+.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999977754440 022222223333455667778889999998887 333 45555554444556
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
.|+...|.+..+.+.+..|....+-..+.+
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 789999999999999999975444333333
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.82 E-value=0.1 Score=48.56 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=31.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC--Cc-ch---HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 048321 286 ISMYSKCGDIDSARVLFDGICDR--TR-VS---WTAMISGYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~~~~~--~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (641)
...+.+.|++++|.+.|+.+... +. .. .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445567777777777766322 11 11 123455667777777777777777665
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.74 E-value=0.023 Score=53.29 Aligned_cols=101 Identities=11% Similarity=-0.042 Sum_probs=62.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGT 521 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ 521 (641)
.|...+......|++++|...|+.+.+.++ -.+- ...+..++.+|...|++++|...|+.+. ..|+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344433333445666777766766665443 1110 2345556667777777777777776654 2222 334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+...+...|+.+.|...++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56667788899999999999998888753
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.011 Score=46.97 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=75.4
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC----CccHHHHHHHHHhcCC
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS----AAPYVEMANKYALGGR 565 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 565 (641)
-+++..|++++|++.|.... .+.++..|+.-..+++-.|+.++|+.-+++++++.-+. ..+|+..+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 46778899999999998876 44578899999999999999999999999999985432 2367888999999999
Q ss_pred chHHHHHHHHHHhCC
Q 048321 566 WDGVANIRTMMKRNQ 580 (641)
Q Consensus 566 ~~eA~~~~~~m~~~~ 580 (641)
-+.|+.-|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999999887765
No 211
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=96.71 E-value=0.0014 Score=52.51 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=32.1
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccccCCCCCcc
Q 048321 586 GQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHLKWIP 636 (641)
Q Consensus 586 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~ 636 (641)
|+||+++ |.|++||.+||+. .+..++...||+|+++.+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~ 40 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVG 40 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhC
Confidence 7899988 9999999999998 4556667778888877763
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=1.1 Score=46.94 Aligned_cols=341 Identities=14% Similarity=0.071 Sum_probs=159.9
Q ss_pred HcCCCCChhhHHH-----HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC---hhHHHHHHhcccCC
Q 048321 134 LVGIQADFVTVMG-----LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD---LKMAELVFCGIEER 205 (641)
Q Consensus 134 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~ 205 (641)
.-|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..++.....-+.+..+ -+.+.++-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456665555544 3555556667777777766553211111 4555555555555432 22233333333332
Q ss_pred CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC----CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhH
Q 048321 206 LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF----RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSV 281 (641)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 281 (641)
.....+|..+.+.....|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...+++-++...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 23456777777777788888888777654322211 0122333444444555555555555544443321 0000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhCCChhHHHHHHH--HH----HHcCCCCCHHHHHHHHHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICD-RTRVSWTAMISGYAQKGDLDEALRLFF--AM----EAAGELPDLVTVLSMISG 354 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m----~~~~~~p~~~t~~~ll~~ 354 (641)
......+...|..+|....+ .|..+ +-+.| +.++-.+++..|. .. ...|..|+..+ .-.+
T Consensus 581 ------l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~ 647 (829)
T KOG2280|consen 581 ------LFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKT---AANA 647 (829)
T ss_pred ------HHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHH
Confidence 01111222333333333311 11110 11111 1222222222111 10 01122333322 2333
Q ss_pred hcCcCchH---HH-------HHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 048321 355 CGQSGALE---LG-------KWFDNYACS-GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL 423 (641)
Q Consensus 355 ~~~~~~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 423 (641)
|.+..... ++ ..+.+.+.. .|..-..-+.+--+.-+...|+-.+|.++-.+..-||-..|-.-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 33333211 11 111111111 12122222333334445566777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
.+++++-+++-+.+. .+.-|.-...+|.+.|+.++|..++-+.. +. .-.+.+|.+.|++.+|
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--------~l----~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--------GL----QEKVKAYLRVGDVKEA 789 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--------Ch----HHHHHHHHHhccHHHH
Confidence 777776655544332 14556666777777777777777654321 11 1456677777777777
Q ss_pred HHHHHh
Q 048321 504 LDFVQS 509 (641)
Q Consensus 504 ~~~~~~ 509 (641)
.++--+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 665443
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.62 E-value=0.013 Score=56.02 Aligned_cols=128 Identities=9% Similarity=0.015 Sum_probs=88.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHH---hhhCCCCC-CChhHHHHHHHHhhccCChHHHHHHHHhCC--------CCCC
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQY---DDKGISYN-PELDHYSCMADLLGRKGKLKEALDFVQSMP--------IKSD 515 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~ 515 (641)
.|..|-..|.-.|++++|+..++.-. +.+| -. .....++.+.+++.-.|+++.|.+.++... ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 45555556666788999887766433 3444 11 224467778888888999999998887643 1123
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHc----cCC--CCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFK----LEP--HSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p--~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
..+..+|.++|....+++.|+.+..+=+. ++. ....++..|++.|...|.-+.|..+.+.-.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556788888888889999888765443 221 235678889999999999999988776543
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.62 E-value=0.026 Score=49.74 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred HHHhhC--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC-------------
Q 048321 401 ELFYAL--PEKIVVSWTTMIAGCAL-----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTG------------- 460 (641)
Q Consensus 401 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------------- 460 (641)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666667766654 3667777778888888888888888888888776532
Q ss_pred ---ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC
Q 048321 461 ---FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK 499 (641)
Q Consensus 461 ---~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 499 (641)
.-+-|++++++|. .+| +.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME-~~g--V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNG--VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcC--CCCcHHHHHHHHHHhccccH
Confidence 3445788888888 788 88999999999888877665
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.031 Score=47.59 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=71.0
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
...|+.+.+...+..+...+...+-|+... ..-.......++.+- ......++..+...|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHH
Confidence 455677777777777775543222233211 111122222222211 124566777888999999999
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+++++..+|.+-..|..+..+|...|+..+|.+.++.+..
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988754
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.54 E-value=0.015 Score=55.68 Aligned_cols=258 Identities=13% Similarity=0.103 Sum_probs=143.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCChhHHHHHHHHHHH----HcCC-CChhHHHHHHHH
Q 048321 115 GFAQMGFLENVLRLFYNMRLVGIQADFV----TVMGLTQAAIHAKHLSLLKSVHSFGIH----IGVD-ADVSVCNTWISS 185 (641)
Q Consensus 115 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~ 185 (641)
-+++.|+....+.+|+...+-| .-|.. .|+.+-.+|.-.+++++|.+.|..=+. .|-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3678888888888888888876 22333 366667777777888888887654221 1100 011222334444
Q ss_pred hHcCCChhHHHHHHhc-------ccCCCCCchhHHHHHHHHhcCCC--------------------chHHHHHHHHHH--
Q 048321 186 YAKCDDLKMAELVFCG-------IEERLRTVVSWNSMVAGCTYGDK--------------------FDDSLNFYRHMM-- 236 (641)
Q Consensus 186 ~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 236 (641)
+--.|.+++|...-.+ +.........+-.+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665433211 11111123344445555554443 233444443321
Q ss_pred --HCCC-CCChhhHHHHHHHhcCCCchHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcC---
Q 048321 237 --YNGF-RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH----YGFD-LDVSVINTLISMYSKCGDIDSARVLFDGI--- 305 (641)
Q Consensus 237 --~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 305 (641)
+.|- -.-...|..|-+.|.-.|+++.|...++.-+. .|-. .....++.|.+++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 12234566666666777888888877765433 2311 22356677788888888888888777643
Q ss_pred ----CCCCc--chHHHHHHHHHhCCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 048321 306 ----CDRTR--VSWTAMISGYAQKGDLDEALRLFFAMEAA-----GELPDLVTVLSMISGCGQSGALELGKWFDNYACS 373 (641)
Q Consensus 306 ----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (641)
..+.+ .+.-+|...|.-..++++|+.++.+-... ...-....+.++..++...|..++|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22222 24555666777777777777777654321 1122335566777777777777777666555443
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.29 Score=47.99 Aligned_cols=160 Identities=19% Similarity=0.089 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---C----hhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 385 ALIDMYSKCGSIGDARELFYALPEK---I----VVSWTTMIAGCAL---NGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.++-.|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777778777777777652 1 1122233445555 7888888888888665555667777766655
Q ss_pred HHhc---------cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH----HHHHHH---HhCC-----CC
Q 048321 455 ACTH---------TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK----EALDFV---QSMP-----IK 513 (641)
Q Consensus 455 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-----~~ 513 (641)
.|-. ...+++|...|.+.-+ +.|+..+--.++.++...|... +..++- ..+. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-----~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE-----IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc-----CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 5422 2246677777765543 5566544334444444444322 222222 1111 23
Q ss_pred CChhH--HHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 514 SDAGI--WGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 514 p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+...- +.+++.++.-.||.+.|.+++++++++.|..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33443 4678899999999999999999999997763
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0027 Score=47.24 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc----CCC---CCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL----EPH---SAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+++.+...+...|++++|+..+++++++ .++ -...+..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666777777777777777777777643 122 24567788999999999999999888764
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.49 E-value=0.12 Score=46.86 Aligned_cols=140 Identities=19% Similarity=0.123 Sum_probs=76.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
.....+...|++.+|++.|+++... -|+. .....+..++.+.|++++|...++...+.++ -.|... +....
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP--~~~~~~-~A~Y~ 84 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP--NSPKAD-YALYM 84 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T--T-TTHH-HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCcchh-hHHHH
Confidence 3445566788888888888888875 3332 2455566678888888888888888887766 444321 11111
Q ss_pred HHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC-----------------ccHH
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA-----------------APYV 554 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~ 554 (641)
.+.+......... ......+....|...++.+++..|+++ ..-.
T Consensus 85 ~g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000000 001122334455555555555555532 2234
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++..|.+.|+|..|..-++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5688899999999999999888764
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.49 E-value=0.69 Score=42.62 Aligned_cols=196 Identities=18% Similarity=0.120 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
..........+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45556666667777777777766666432 3345566666666667777777777777776432221 12222222
Q ss_pred -HHhccCChHHHHHHHHHHHhhhCCCC--CCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC--hhHHHHHHHHHHH
Q 048321 455 -ACTHTGFLEKGWAISIIQYDDKGISY--NPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD--AGIWGTLLCACKI 528 (641)
Q Consensus 455 -~~~~~g~~~~a~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~ll~~~~~ 528 (641)
.+...|+++.+...+..... .. . ......+......+...++.++|...+.... ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LD--PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777888888888877753 22 0 1123334444444667778888888877765 2233 5567777777777
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++.+.+...+..+....|.....+..++..+...|.++++...++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888887775566667777777667788888777666543
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.44 E-value=0.29 Score=39.28 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=82.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+. ...+|++.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFD----------------is~C~NlK 73 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFD----------------ISKCGNLK 73 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----------------GGG-S-TH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcC----------------chhhcchH
Confidence 3457777778887777653 2333455554433333444444455554443222 23445555
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 502 EALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 502 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
.....+-.+. .+......-+......|.-++-.++++.+.+-+..+|+...-++.+|.+.|+..++.+++++..++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 5555444433 23334555677788899999999999998865555689999999999999999999999999999987
Q ss_pred c
Q 048321 582 K 582 (641)
Q Consensus 582 ~ 582 (641)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.2 Score=46.72 Aligned_cols=102 Identities=11% Similarity=-0.013 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC---ChHHHHHHHHhCC-CCC-ChhHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG---KLKEALDFVQSMP-IKS-DAGIW 519 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~ 519 (641)
|...|..|..+|...|+++.|..-|....+-.| ++...+..+..++.... ...++.++|+++. .+| |+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 445777777788888888888888888776555 55666666665554332 3567778888866 445 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
..|...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6666778888888888888888888877643
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.37 E-value=0.044 Score=54.35 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=97.8
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-cCCCCChh-hHHHHHHHHhcc---------CChHHHHHHHHHHH
Q 048321 412 VSW--TTMIAGCALN-----GEFVEALDLFHQLME-LDLRPNRV-TFLAVLQACTHT---------GFLEKGWAISIIQY 473 (641)
Q Consensus 412 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~~~~~~---------g~~~~a~~~~~~~~ 473 (641)
..| ...+.+.... ...+.|+.+|.+... ..+.|+.. .|..+..++... ....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554431 235678888888882 23577765 444444433322 13445666666666
Q ss_pred hhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 474 DDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 474 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
+.. .-|......+..++.-.|+++.|...|++.. ..|| ..+|......+...|+.++|.+.++++++++|....
T Consensus 332 eld----~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DIT----TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcC----CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 422 2456666777777777777888888888876 5554 447777777777888888888888888888887543
Q ss_pred cHH--HHHHHHHhcCCchHHHHHH
Q 048321 552 PYV--EMANKYALGGRWDGVANIR 573 (641)
Q Consensus 552 ~~~--~l~~~~~~~g~~~eA~~~~ 573 (641)
+-. ..+++|+..+ .++|.+++
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHH
Confidence 333 3444565544 56666655
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=0.42 Score=49.00 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=52.4
Q ss_pred cHHHHHHHHHhcCChhHHHHH---------HHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH--HHHHHHHcCCCCh
Q 048321 108 SWNAMLVGFAQMGFLENVLRL---------FYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV--HSFGIHIGVDADV 176 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l---------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~ 176 (641)
.+.+-+-.|...|.+++|.++ ++.+..+ ..+...++..=++|.+.++..-.+-+ ++.+.+.|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 344445556667777766553 2222111 12334455666667666665544333 4556666766765
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 177 SVCNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 177 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
.. +...++-.|.+.+|.++|.+-..
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 44 34566777889999888866543
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=96.26 E-value=0.25 Score=49.21 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhh---------ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLG---------RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~ 528 (641)
..+.|..+|.+...... +.|+ ...|..+..++. ......+|.++.+... .+.|+.....+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45677778888874445 6776 444444443322 1223456666666654 34466677777777777
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.++.+.|...|++++.++|+.+..|...+.+..-.|+.++|.+.+++..+..
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7778888888888888888888888888888888888888888888754433
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.24 E-value=1.7 Score=44.58 Aligned_cols=410 Identities=11% Similarity=0.091 Sum_probs=231.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT-VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
+...|+.+|.---.....+.+...+..+... .|...- |......=.+.|..+.+..+|++.+. |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4567888887655555566667777777643 455443 33333334566778888888888776 4566777777766
Q ss_pred HHhHc-CCChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhc---
Q 048321 184 SSYAK-CDDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFV--- 255 (641)
Q Consensus 184 ~~~~~-~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--- 255 (641)
..++. .|+.+.....|+..... ..+...|...|.--..++++.....+|++.++. |. .-|+.....+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHH
Confidence 55443 57777777888776653 445777888888888888899999999888763 21 11221111110
Q ss_pred CC------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhH
Q 048321 256 CP------EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD-IDSARVLFDGICDRTRVSWTAMISGYAQKGDLDE 328 (641)
Q Consensus 256 ~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (641)
+. ...+++.++-...... ..-...+. .+.-....+....+ .+..++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~~ 249 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLTE 249 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhhH
Confidence 00 0111111111110000 00000000 00000011111000 111111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc---C----CCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 329 ALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSG---G----LKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 329 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
+.....+.... --..+-........+..++.-++. . ..++..+|...++.-.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 11111111000 000011111122222223332221 1 12346678888888889999999999
Q ss_pred HHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 402 LFYALPEK---IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 402 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
+|++..-| -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-+...|++..|..+++.+.++.
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-- 396 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-- 396 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--
Confidence 99988764 2345666666566668988888888877765433333333333334567889999999999998653
Q ss_pred CCCCC-hhHHHHHHHHhhccCChHHHH---HHHHhCC-CCCChhHHHHHHH-----HHHHcCCHHHHHHHHHHhHccCCC
Q 048321 479 SYNPE-LDHYSCMADLLGRKGKLKEAL---DFVQSMP-IKSDAGIWGTLLC-----ACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 479 ~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|+ +..-..-+...-+.|..+.+. +++.... .+.+..+...+.- -+...++.+.|..++.++.+..|+
T Consensus 397 ---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 397 ---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD 473 (577)
T ss_pred ---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc
Confidence 44 333344456777888888888 5555443 3333333333322 234568999999999999999999
Q ss_pred CCccHHHHHHHHHhcC
Q 048321 549 SAAPYVEMANKYALGG 564 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g 564 (641)
+...|..+.+.....+
T Consensus 474 ~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 474 CKVLYLELIRFELIQP 489 (577)
T ss_pred cHHHHHHHHHHHHhCC
Confidence 9999999988877665
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.23 E-value=1.4 Score=43.49 Aligned_cols=61 Identities=15% Similarity=0.001 Sum_probs=51.7
Q ss_pred hHHHHHHHH--HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 517 GIWGTLLCA--CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 517 ~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..-+.|..| ...+|++.++.-...-+.++.| ++.+|..+|-++....+++||.+++..++.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 344555554 5689999999999999999999 599999999999999999999999987664
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.0058 Score=45.42 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-----CC---CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-----IK---SD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+|+.+...|.+.|++++|++.|++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555555555555555432 11 12 335566666677777777777777766553
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.10 E-value=1.6 Score=42.98 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC 489 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 489 (641)
...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...++ .+...-.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~----d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP----DSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC----CchHHHHH
Confidence 3567778887777777889999999999988 5677778888888655 4788899999998775443 33344456
Q ss_pred HHHHhhccCChHHHHHHHHhCC--CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 490 MADLLGRKGKLKEALDFVQSMP--IKSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
.+..+.+-++-+.|..+|+... ...+ ..+|..++..-..-|+...+..+-+++.++-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788889999999999999654 2223 4589999999999999999999999999998874
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.053 Score=52.41 Aligned_cols=138 Identities=13% Similarity=-0.010 Sum_probs=101.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK 497 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 497 (641)
.+.|.+.|++..|...|++.... |. +.+.-+.++..... ..-...+..+.-+|.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-----------~~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-----------ALKLACHLNLAACYLKL 270 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-----------HHHHHHhhHHHHHHHhh
Confidence 45677888888888888887652 11 11111112222111 12234566677888999
Q ss_pred CChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH-HHHHH
Q 048321 498 GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV-ANIRT 574 (641)
Q Consensus 498 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA-~~~~~ 574 (641)
+++.+|+...+... .++|.-.+..-..+|...|+++.|+..|+++++++|+|..+-..++.+--+..++.+. .+++.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 4556777777888999999999999999999999999988888888888887776666 66888
Q ss_pred HHHhC
Q 048321 575 MMKRN 579 (641)
Q Consensus 575 ~m~~~ 579 (641)
.|-.+
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88653
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=2.4 Score=44.21 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=22.3
Q ss_pred hHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048321 92 DCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMR 133 (641)
Q Consensus 92 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 133 (641)
++|.+..+. .|.+..|..+.....+.-.++-|...|-+..
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 344443333 3445667777766666666666666655543
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.038 Score=50.66 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=38.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|..++...|+++.|...|..+.+-.|++ |+.+.-|+.+..+.|+-++|..+++++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5556666666666666666666655543 455667777777777777777777766654
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.82 E-value=0.15 Score=42.05 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=57.5
Q ss_pred HHhhccCChHHHHHHHHhCC----CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc---cHHHHHHHHHhc
Q 048321 492 DLLGRKGKLKEALDFVQSMP----IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA---PYVEMANKYALG 563 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 563 (641)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.++++.|...+++.+++.|.++. ++...|-++..+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33446777777777777765 112 2334556778888889999999999999999887654 344445455555
Q ss_pred CC---------------chHHHHHHHHHHhC
Q 048321 564 GR---------------WDGVANIRTMMKRN 579 (641)
Q Consensus 564 g~---------------~~eA~~~~~~m~~~ 579 (641)
.. ..+|..-|+.+..+
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 44 55666666655543
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.81 E-value=0.05 Score=53.90 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG----IWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+...++.+..+|.+.|++++|+..|++.. ..|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667777777777777777777777744 556532 4777777777778888888888777776
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.77 E-value=1.6 Score=40.14 Aligned_cols=197 Identities=18% Similarity=0.077 Sum_probs=126.5
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHH-H
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSG-GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KI-VVSWTTMIA-G 420 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~ 420 (641)
..+......+...+....+...+...... ........+..+...+...++...+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444555555555544444431 2233444555555566666667777777766554 11 122333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhh
Q 048321 421 CALNGEFVEALDLFHQLMELDLRP----NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLG 495 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 495 (641)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+.......+ . ....+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 213 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP----DDDAEALLNLGLLYL 213 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc----ccchHHHHHhhHHHH
Confidence 7788899999999988855 244 222344444446678889999999888885332 3 3677888888888
Q ss_pred ccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 496 RKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..+.+++|...+.... ..|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8889999999888876 4444 445566666666777899999999999998886
No 236
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.68 E-value=1.5 Score=39.71 Aligned_cols=56 Identities=18% Similarity=0.042 Sum_probs=23.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGEL--PDLVTVLSMISGCGQSGALELGKWFDNYACS 373 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (641)
..+.+.|++.+|...|+++...-.. --......+..++.+.|+++.|...++..++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555566666665555543111 0112223334444445555555555544444
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.47 Score=44.12 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=81.9
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHH---HHHHHHHcCC
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT---LLCACKIHLN 531 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~ 531 (641)
.....|++.+|...|+......+ -+...--.|+.+|...|+.++|..++..++......-|.. -+....+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~----~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP----ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 44667888888888888875433 3356667788888899999999999998883333222322 2233333333
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+.. .+++-+..+|+|...-..++..|...|+.++|.+.+-.+..+
T Consensus 219 ~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32222 234445678998999999999999999999999877666554
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.46 E-value=0.11 Score=49.16 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCh---hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC--ChhH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLME-LDLRPNR---VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP--ELDH 486 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p--~~~~ 486 (641)
+|..+..++-+..++.+++.+-+.-.. .|..|.. ....++-.++...+-++++++.|+.+.+-....-.| ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554443332 2222311 122233445555556677777766665322200111 2345
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-----CC-CC------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC--CC----
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-----IK-SD------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE--PH---- 548 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~---- 548 (641)
+..|...|.+..++++|.-+..+.. .. .| ..+...+.-+++..|....|.+.-+++.++- ..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6667777777777776655544432 11 11 1122223445666777766766666654431 11
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
......+++++|...|+.|.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344667777777776666555444
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.46 E-value=0.65 Score=48.10 Aligned_cols=115 Identities=16% Similarity=0.012 Sum_probs=80.2
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHH-HHHHHhhccCChHHHHHHHHhCCC------CCChhHHHHHHHHHHHcCC
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYS-CMADLLGRKGKLKEALDFVQSMPI------KSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~ 531 (641)
....+.+.++++.+.+.+ |+...|. .-...+...|++++|++.|++... +-....+--+...+....+
T Consensus 246 ~~~~~~a~~lL~~~~~~y-----P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY-----PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 456778888888888644 4544443 334667778888888888886541 1123345556677788899
Q ss_pred HHHHHHHHHHhHccCCCCCcc-HHHHHHHHHhcCCc-------hHHHHHHHHHHh
Q 048321 532 IEIGEYVAYCLFKLEPHSAAP-YVEMANKYALGGRW-------DGVANIRTMMKR 578 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~-------~eA~~~~~~m~~ 578 (641)
+++|...+.++.+...-.... +...+-+|...|+. ++|.+++++.+.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999998876554333 34566678888988 888888887765
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.14 Score=47.96 Aligned_cols=159 Identities=14% Similarity=-0.025 Sum_probs=115.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH----HHHHhhccC
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC----MADLLGRKG 498 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g 498 (641)
-+|+..+|-..++++.+. .+.|...+...-.+|...|+...-...++++.... .|+...|.. +..++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhc
Confidence 478888999999999886 45566788888889999999999999998887543 366655543 445567899
Q ss_pred ChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHH
Q 048321 499 KLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 499 ~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
-+++|++.-++.. .+.|.=.-.++.......|+.+++.+..++--..-.. -+..|-..+-.|...+.++.|.++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998876 2334434456666777889999999887765432211 134566677778888999999999
Q ss_pred HHHHHhCCCccCCc
Q 048321 573 RTMMKRNQVKKFPG 586 (641)
Q Consensus 573 ~~~m~~~~~~~~~~ 586 (641)
++.=.-+...|+.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87654444555554
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.36 E-value=0.037 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.044 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=95.33 E-value=0.13 Score=43.59 Aligned_cols=86 Identities=10% Similarity=-0.115 Sum_probs=60.8
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 532 (641)
-+-..|++++|..+|.-+.. .+ .-+...|..|..++-..+++++|+..|...- ...|+.........+...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~-~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI-YD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34567888888888887773 22 1345556777778888888888888887643 233444555566777788888
Q ss_pred HHHHHHHHHhHc
Q 048321 533 EIGEYVAYCLFK 544 (641)
Q Consensus 533 ~~a~~~~~~~~~ 544 (641)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888877
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.30 E-value=0.24 Score=40.45 Aligned_cols=47 Identities=6% Similarity=0.032 Sum_probs=23.0
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 443 RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
.|+..+..+++.+|+..|++..|.++.+...+.++ ++-+...|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~--I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP--IPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Confidence 34444555555555555555555555555554444 444444444443
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.30 E-value=0.029 Score=33.53 Aligned_cols=32 Identities=16% Similarity=-0.059 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.26 E-value=0.17 Score=41.33 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHHHhCC----CCCChhHHHHHHHHHHHc
Q 048321 480 YNPELDHYSCMADLLGRKGKLKEALDFVQSMP----IKSDAGIWGTLLCACKIH 529 (641)
Q Consensus 480 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~ 529 (641)
+.|+.....+++.+|+..|++..|+++++... .+-+...|..|+.-+...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999887754 444577888888765443
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.26 E-value=1.6 Score=48.40 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=11.3
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..|+..+...++.-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 334444445555555544444433
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.17 E-value=1 Score=46.67 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChH
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 501 (641)
...+.|.++++.+.+. -|+...|...-. .+...|++++|.+.|+....... --|. ...+.-+.-.+.-.++++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHchHH
Confidence 3445566666666654 455555444333 44455666666666665442111 1111 122333444455666666
Q ss_pred HHHHHHHhCC--CCCChhHHHHHHHHH-HHcCCH-------HHHHHHHHHh
Q 048321 502 EALDFVQSMP--IKSDAGIWGTLLCAC-KIHLNI-------EIGEYVAYCL 542 (641)
Q Consensus 502 ~A~~~~~~~~--~~p~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~ 542 (641)
+|.+.|..+. ..-+...|.-+..+| ...|+. ++|...++++
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 6666666655 222233343333333 234555 5555555544
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.13 E-value=0.058 Score=46.54 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=71.0
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+-+...|++++|..-|..+. .++- .+.|..-..+..+.+.++.|+....+++++.|.+..+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45667888888888777754 2222 2344444566778899999999999999999988888888899999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 048321 565 RWDGVANIRTMMKRNQV 581 (641)
Q Consensus 565 ~~~eA~~~~~~m~~~~~ 581 (641)
++++|.+-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999887653
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.12 E-value=0.27 Score=45.06 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=85.9
Q ss_pred hhHHhcccC--CCChhhhHHHHHHHHHhC-----CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHH
Q 048321 6 LPPRLNRIY--RSSTINQWNSQIREAVNK-----NEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHG 78 (641)
Q Consensus 6 a~~~f~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~ 78 (641)
.++.|...+ .++-. +|-+.+..+... +.++---..++.|++.|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf--------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF--------- 122 (406)
T ss_pred hhhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc---------
Confidence 345566555 56666 888888877653 4556666678899999999999999999988744211
Q ss_pred HHhhccCcCCCChhHHHHHhhccCCCCcccHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 048321 79 HIVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQM-GFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL 157 (641)
Q Consensus 79 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 157 (641)
..-|.+=..|..- .+-+-++.++++|...|+.||..+-..+++++.+.+..
T Consensus 123 ----------------------------iP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 123 ----------------------------IPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ----------------------------ccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1122233333332 23356789999999999999999999999999877653
Q ss_pred -hHHHHHHHHHHH
Q 048321 158 -SLLKSVHSFGIH 169 (641)
Q Consensus 158 -~~a~~~~~~~~~ 169 (641)
.+..++.-.|-+
T Consensus 175 ~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 175 TKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHhhhh
Confidence 334444444443
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.09 E-value=0.25 Score=41.93 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----hhhCCCCCCChhHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQY----DDKGISYNPELDHY 487 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~p~~~~~ 487 (641)
+...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. +..| +.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg--~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG--IEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS------HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC--cCcCHHHH
Confidence 34455666667777777777777777752 3345577777777777777777777776654 3456 66665543
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.65 Score=43.76 Aligned_cols=155 Identities=11% Similarity=-0.014 Sum_probs=107.2
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHhccCChH
Q 048321 391 SKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ----ACTHTGFLE 463 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~ 463 (641)
.-.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+-. ++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456888888888888776 47888888889999999999999999998864 3566654443322 456789999
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCCh------hHHHHHHHHHHHcCCHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA------GIWGTLLCACKIHLNIEIGEY 537 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~ 537 (641)
+|.+.-++..+-+. -|.-.-.+....+.-.|+..++.++..+-...-+. ..|-...-.+...+.++.|++
T Consensus 193 dAEk~A~ralqiN~----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRALQINR----FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhccCCC----cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99998887775222 34555567788889999999999999886511110 011111222334578999999
Q ss_pred HHHHhH--ccCCCCC
Q 048321 538 VAYCLF--KLEPHSA 550 (641)
Q Consensus 538 ~~~~~~--~~~p~~~ 550 (641)
++.+-+ +++.+|.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 987532 3445554
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.76 E-value=1.9 Score=43.44 Aligned_cols=99 Identities=7% Similarity=-0.017 Sum_probs=70.4
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChh--HHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAG--IWGTLLCA 525 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~ll~~ 525 (641)
..+..++-+.|+.++|.+.|.++.+..+ ..........|+..|...+++.++..++.+-. .-|... .|++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p--~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFP--NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC--ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 4456667788999999999999986655 33445567788999999999999999998865 223333 55655544
Q ss_pred HHHcCCH---------------HHHHHHHHHhHccCCCCC
Q 048321 526 CKIHLNI---------------EIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 526 ~~~~g~~---------------~~a~~~~~~~~~~~p~~~ 550 (641)
.+..++. ..|.++..++++.+|.-+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4444431 245678889988888754
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=2.8 Score=37.93 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=100.8
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHHHHHHHHcC
Q 048321 348 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI--VVSWTTMIAGCALNG 425 (641)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 425 (641)
|...-.+|....+++++...+....+. ...+...|. ....++.|..+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444566666777776665555431 111111111 1223445555555555422 234555666777777
Q ss_pred ChHHHHHHHHHHHH--cCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 426 EFVEALDLFHQLME--LDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 426 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
.++.|-..+++.-+ .++.|+.. .|..-+......++...| .+.+......|.+..+++
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma------------------~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA------------------FELYGKCSRVLVRLEKFT 167 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH------------------HHHHHHhhhHhhhhHHhh
Confidence 77766666665443 22344432 222222222222222222 233444556777777877
Q ss_pred HHHHHHHhCC-------CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhHcc----CCCCCccHHHHHHHHHhcCCchHH
Q 048321 502 EALDFVQSMP-------IKSDA-GIWGTLLCACKIHLNIEIGEYVAYCLFKL----EPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 502 ~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
||-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.-..+ .|++..+...|...| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 7766665532 11222 13444445555666888888888775544 244444555555444 45777777
Q ss_pred HHHH
Q 048321 570 ANIR 573 (641)
Q Consensus 570 ~~~~ 573 (641)
.++.
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 6665
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.46 E-value=0.067 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=26.8
Q ss_pred CccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 550 AAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|..+..++..|.+.|++++|+++++++.+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999998875
No 255
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.34 E-value=8.4 Score=41.59 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh-------hHHHHHHHHHHHHcCCCChh
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL-------SLLKSVHSFGIHIGVDADVS 177 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~ 177 (641)
+...| ++|-.+.++|++++|.++..+.... .......|...++.+....+- +....-+.+..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 5777889999999999999666543 566677888999998775432 23444455444433322543
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.42 Score=44.02 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYS 488 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~ 488 (641)
|+.-+. +.+.|++.+|...|...++. -|+. ..+-.|..++...|++++|..+|..+.+.++ -.|. ++.+-
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P--~s~KApdall 219 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP--KSPKAPDALL 219 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC--CCCCChHHHH
Confidence 444443 33455666666666666664 2332 1444555666666666666666666665555 3333 23444
Q ss_pred HHHHHhhccCChHHHHHHHHhC
Q 048321 489 CMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
-|.....+.|+.++|...+++.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 4444444444444444444443
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.30 E-value=0.74 Score=46.12 Aligned_cols=148 Identities=8% Similarity=-0.023 Sum_probs=83.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
..+...-+++-++..+. .||..+...++. -.....+.++.++|++..+.....+..+. . ....|..-
T Consensus 181 ERnp~aRIkaA~eALei--~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~-----~---~~~~g~~~-- 247 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEI--NPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEASLGKSQ-----F---LQHHGHFW-- 247 (539)
T ss_pred cCCHHHHHHHHHHHHHh--hhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHhhchhh-----h---hhcccchh--
Confidence 34556666666666663 677665544443 23445678888888887742210000100 0 00111111
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--CCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 504 LDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--SAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+.+..-...|-..+-..|...+++.|+.++|++.++.+++..|. +-.....|++.|...+++.|+..++.+-.+...
T Consensus 248 -e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 248 -EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred -hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 11111111222333355666778888888888888888877664 345677888888888888888888877654433
Q ss_pred ccCC
Q 048321 582 KKFP 585 (641)
Q Consensus 582 ~~~~ 585 (641)
.|..
T Consensus 327 pkSA 330 (539)
T PF04184_consen 327 PKSA 330 (539)
T ss_pred CchH
Confidence 3333
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=2.5 Score=35.44 Aligned_cols=113 Identities=5% Similarity=-0.004 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSY 186 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 186 (641)
..-..+|..+.+.+.+......++.+...+ ..+...++.++..+++.+. ...... +.. .++.......++.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~---l~~---~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIER---LDN---KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHH---HHh---ccccCCHHHHHHHH
Confidence 345567777777777888888888777665 3555566777777765432 222222 221 12233333455555
Q ss_pred HcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcC-CCchHHHHHHHH
Q 048321 187 AKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYG-DKFDDSLNFYRH 234 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 234 (641)
.+.+-++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 80 ~~~~l~~~~~~l~~k~~~-------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN-------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHcCcHHHHHHHHHhhcC-------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 555555555555555443 33334444433 455555555443
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.18 E-value=4.1 Score=40.18 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=48.4
Q ss_pred HHHHHhHcCCChhHHHHHHhcccCCCC-----CchhHHHHHHHHhc---CCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048321 181 TWISSYAKCDDLKMAELVFCGIEERLR-----TVVSWNSMVAGCTY---GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLS 252 (641)
Q Consensus 181 ~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 252 (641)
.|+-.|....+++...++++.+...+. ....-....-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444467778888888888888877411 11112233445556 7888888888888666666677777776665
Q ss_pred Hh
Q 048321 253 SF 254 (641)
Q Consensus 253 ~~ 254 (641)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 260
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=2.8 Score=37.91 Aligned_cols=23 Identities=4% Similarity=-0.123 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHH
Q 048321 212 WNSMVAGCTYGDKFDDSLNFYRH 234 (641)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~ 234 (641)
|+--...|..+|.++.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 44444455555555544444443
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.99 E-value=4.9 Score=36.91 Aligned_cols=168 Identities=13% Similarity=0.021 Sum_probs=94.5
Q ss_pred HhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cC-
Q 048321 391 SKCGSIGDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH---TG- 460 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g- 460 (641)
...|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++....-..-...-|...|.+++. ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45677777777777766521 123344555666778888888888877764211122234444443332 11
Q ss_pred ---C---hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhH--HHHHHHHHHHcCCH
Q 048321 461 ---F---LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGI--WGTLLCACKIHLNI 532 (641)
Q Consensus 461 ---~---~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~ 532 (641)
+ ..+|..-|+..+.+++ +. .--.+|...+..+. |... =..+...|.+.|.+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryP-----nS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYP-----NS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCC-----CC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 1 2234444444444333 11 11111111111110 0000 12345667888999
Q ss_pred HHHHHHHHHhHccCCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSA---APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.-|..-++++++--|+.+ +.+..+.++|.+.|..++|.+..+-+...
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999999988877644 45667788899999999999987766554
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.93 E-value=7.3 Score=38.68 Aligned_cols=446 Identities=12% Similarity=0.082 Sum_probs=233.0
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccCCCCc---ccHHHHHHHH
Q 048321 40 LLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAVRDV---ASWNAMLVGF 116 (641)
Q Consensus 40 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~---~~~~~li~~~ 116 (641)
++=++.++. ..|..+|-.|++-+.. .+..++.++++++|..|-+ .+|..-|++-
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~t---------------------q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~E 86 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLET---------------------QESMDAEREMYEQLSSPFPIMEHAWRLYMSGE 86 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhh---------------------hhhHHHHHHHHHHhcCCCccccHHHHHHhcch
Confidence 444444442 2255678888888743 4667777888888877643 4788888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh------hHHHHHHHHHHH-HcCCCC-hhHHHHHHHHh--
Q 048321 117 AQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL------SLLKSVHSFGIH-IGVDAD-VSVCNTWISSY-- 186 (641)
Q Consensus 117 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~-- 186 (641)
...++++.+..+|.+.....+..| .|..-+.-..+.+.. ....+.++..+. .+++|- ...|+..+...
T Consensus 87 LA~~df~svE~lf~rCL~k~l~ld--LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 87 LARKDFRSVESLFGRCLKKSLNLD--LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhhccHh--HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 888999999999999887655444 444444433332211 122233444433 234432 23344333222
Q ss_pred -HcCC------ChhHHHHHHhcccCCCCC--chhH------HHHHHHHhcC---C----CchHHHHHHHHHHH--CCCCC
Q 048321 187 -AKCD------DLKMAELVFCGIEERLRT--VVSW------NSMVAGCTYG---D----KFDDSLNFYRHMMY--NGFRL 242 (641)
Q Consensus 187 -~~~g------~~~~A~~~~~~~~~~~~~--~~~~------~~li~~~~~~---g----~~~~A~~~~~~m~~--~g~~p 242 (641)
-..| ++|..+..+.++...|-+ ...| ..=++..... | -+-.|...+++... .|.+.
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 2223 344555566665543111 1112 1111111110 1 13455666666543 24321
Q ss_pred ----ChhhHHHHHH-----------HhcCC-----Cc--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 243 ----DVTTVVSLLS-----------SFVCP-----EA--LVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARV 300 (641)
Q Consensus 243 ----~~~t~~~ll~-----------~~~~~-----~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 300 (641)
+..|++.+-+ .=... ++ .....-+|++.+.. +.-...+|----.-+...++-+.|+.
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~ 323 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALK 323 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHH
Confidence 2233332111 10000 00 11111122222211 11122222222233344566666766
Q ss_pred HHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CcCchHHHHHHHHHHHHcCCC
Q 048321 301 LFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCG---QSGALELGKWFDNYACSGGLK 377 (641)
Q Consensus 301 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~ 377 (641)
..+.-.+-.+...--+-..|--..+.+.....|++..+. ...-.+.+.+-+ .-|+.+.-.+++ .+. ..
T Consensus 324 tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~ 394 (660)
T COG5107 324 TVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-IN 394 (660)
T ss_pred HHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-Hh
Confidence 665442222221112233444455555555566554321 000000111111 112232221111 111 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH-HH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF-LA 451 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 451 (641)
.-..+|..+++.-.+..-++.|+.+|-++.+ +++..+++++.-++. |+..-|..+|+--... -||...| .-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 2345778888888888889999999988765 577889999987764 7888999999876664 5666544 45
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACK 527 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~ 527 (641)
.+.-+...++-+.|+.+|+..+.+. ..+ ...|..+|+--..-|++..+..+=+.+. .-|...+.....+-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~----~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERL----EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHH----HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 5667778899999999999777542 233 5679999998889999988877766664 3344333333344443
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.90 E-value=0.79 Score=46.74 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=19.9
Q ss_pred hhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 494 LGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
..+.|+++.|.++.++.. +...|..|.......|+.+.|++++++
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444443322 334444444444444444444444443
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.88 E-value=2.8 Score=35.12 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCC
Q 048321 144 VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGD 223 (641)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 223 (641)
...++..+...+.......+++.+.+.+. .+...++.++..|++... ......+.. . .+......+++.|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~--~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K--SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c--cccCCHHHHHHHHHHcC
Confidence 44566667667778888888888887763 577788888888887543 333444442 1 33344445666666666
Q ss_pred CchHHHHHHHHH
Q 048321 224 KFDDSLNFYRHM 235 (641)
Q Consensus 224 ~~~~A~~~~~~m 235 (641)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666555
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.87 E-value=0.6 Score=42.89 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC----------
Q 048321 399 ARELFYALP--EKIVVSWTTMIAGCALN-----GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF---------- 461 (641)
Q Consensus 399 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------- 461 (641)
.++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|+.||..+-+...
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 56778888888877653 5667777788999999999999999999998766432
Q ss_pred ------hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH-HHHHHHHhCC
Q 048321 462 ------LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK-EALDFVQSMP 511 (641)
Q Consensus 462 ------~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 511 (641)
-+-++.++++|. .+| +.||.++-..+++++++.|..- +...+.--|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hG--VmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHG--VMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcC--CCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234788999998 799 9999999999999999998643 3334444443
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.76 E-value=2.9 Score=37.09 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|+++-|.+-|...-+..+ -.|-...|--+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~--~DPfR~LWLYl 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP--NDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC--CChHHHHHHHH
Confidence 46666666667777777777777777764 3322 2222222234456777777666665554333 22333333222
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-------CccHHHHHHHHHhc
Q 048321 491 ADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-------AAPYVEMANKYALG 563 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 563 (641)
+ .+.-+..+|..-+.+--.+.|..-|...+-.+.-..-.+ +.+++++..-..++ .++|.-++.-|...
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 233455555543322112334455655544443222111 12223332221122 46788999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048321 564 GRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 564 g~~~eA~~~~~~m~~~~ 580 (641)
|..++|..+++......
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998876543
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.74 E-value=2.3 Score=36.04 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=61.4
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPEL-DHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~ 532 (641)
.-...++.+++..+++.+.- +.|.. ..-..-+-.+.+.|++.+|+.+|+++. ..|....-.+|+..|.....-
T Consensus 19 ~al~~~~~~D~e~lL~ALrv-----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV-----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHH-----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33566788888888888775 33442 222333455678889999999998877 445555667777777665554
Q ss_pred HHHHHHHHHhHccCCCCCccHHHH
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
..=....+++++..|+ +.+-..+
T Consensus 94 ~~Wr~~A~evle~~~d-~~a~~Lv 116 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD-PDARALV 116 (160)
T ss_pred hHHHHHHHHHHhcCCC-hHHHHHH
Confidence 5556667777777664 4443333
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.62 E-value=1.6 Score=36.12 Aligned_cols=113 Identities=15% Similarity=0.009 Sum_probs=62.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPN---RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
.....+.|++++|.+.|+.+...- +.. ...-..++.++.+.+++++|...+++.++.++ -.|++ .|.....++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP--~hp~v-dYa~Y~~gL 92 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP--THPNV-DYAYYMRGL 92 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCCCc-cHHHHHHHH
Confidence 334456677777777777777651 111 12445566677777777777777777776555 44442 333333333
Q ss_pred hccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 495 GRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+.-...+.++. .+. ..=+..+....|...|++++..-|++
T Consensus 93 ~~~~~~~~~~~---~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 93 SYYEQDEGSLQ---SFF------------RSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHhhhHHh---hhc------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 32222221111 111 01111223567888889999999974
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.53 E-value=0.11 Score=48.66 Aligned_cols=113 Identities=12% Similarity=-0.058 Sum_probs=77.5
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH 529 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~ 529 (641)
.+-|.++|.+++|+..|..... ..| +..++..-..+|.+..++..|+.=.+... .+.-...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc-----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4567788999999999988775 345 67777777788888888887776665543 111223444445555567
Q ss_pred CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 530 LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
|+..+|.+-++.+++++|++ ..|-..|.+..-..|+.-+.+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN----IELKKSLARINSLRERKIATK 219 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHHhh
Confidence 88889999999999999984 345555666555666554443
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.39 E-value=6.3 Score=36.22 Aligned_cols=137 Identities=18% Similarity=0.118 Sum_probs=85.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDL-RP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
-+..-.+.|++++|.+.|+.+..... .| ...+...++-++.+.+++++|....++..+.+| -.|++. |...+.++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP--~~~n~d-Y~~YlkgL 116 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP--THPNAD-YAYYLKGL 116 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCCChh-HHHHHHHH
Confidence 34445678999999999999987521 11 223566666788889999999999999988877 666653 33333333
Q ss_pred hccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-----------------CccHHHH
Q 048321 495 GRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-----------------AAPYVEM 556 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~~l 556 (641)
+ .|..+. ..-|.. -...|...++.++..-|++ ..+=..+
T Consensus 117 s----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 117 S----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred H----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3 111111 011110 1123333344444444442 2333467
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++.|.+.|.|..|..-+++|.+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 88999999999999999999875
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.38 E-value=0.12 Score=31.27 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=21.0
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999988843
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.38 E-value=0.21 Score=39.92 Aligned_cols=56 Identities=14% Similarity=-0.009 Sum_probs=51.5
Q ss_pred HHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 524 CACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
-+....|+.+.|++.|.+++.+-|.+++.|...+..|.-+|+.++|.+-+++..+-
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999998887763
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.27 E-value=1.8 Score=44.19 Aligned_cols=156 Identities=13% Similarity=0.040 Sum_probs=92.9
Q ss_pred HHHhcCChhHHHHHHH--HHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh
Q 048321 115 GFAQMGFLENVLRLFY--NMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 115 ~~~~~g~~~~a~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 192 (641)
...-.++++.+.+... ++.. .++ ..-...+++-+.+.|..+.|.++-.. +. .-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3455778888776664 1111 122 33467777778888888888776432 21 234566788999
Q ss_pred hHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 048321 193 KMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH 272 (641)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (641)
+.|.++-++. .+...|..|.....+.|+++-|.+.|++..+ |..|+-.+...|+.+.-.++......
T Consensus 335 ~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998887766 4577899999999999999999999988643 44555555566776666666666655
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 273 YGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 273 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
.|- +|....++.-.|++++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 541 33344444555666666655543
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.90 E-value=0.16 Score=30.15 Aligned_cols=31 Identities=13% Similarity=-0.086 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777777777777777777777774
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.46 E-value=0.69 Score=39.09 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=30.6
Q ss_pred ccCChHHHHHHHHhCC-CCCChhHHHHH-HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 496 RKGKLKEALDFVQSMP-IKSDAGIWGTL-LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~-~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
+.++.+++..++..+. ..|.......+ ...+...|++.+|+++++.+.+-.|..+..-.+++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4445555555554444 33433322221 2223444555555555555444444444444444444444443
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.32 E-value=0.79 Score=37.98 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.++.+.++.++..+.-+.|+.++.-..-++++...|+|+||.++++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666777776666777766666666777777777777777776666544
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.03 E-value=5.1 Score=38.51 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=57.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhccCChHHHHHHHHHHHh---hhCCCCCCChhHHH
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLR-PN----RVTFLAVLQACTHTGFLEKGWAISIIQYD---DKGISYNPELDHYS 488 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~p~~~~~~ 488 (641)
|..++.-.+.++++++.|+....---. -| ...+..+-+-|....++++|.-+...+.+ ..+ +..-..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~--l~d~~~kyr 205 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG--LKDWSLKYR 205 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC--cCchhHHHH
Confidence 444555555566666666655441101 11 12455555555666666665544333321 122 111112222
Q ss_pred H-----HHHHhhccCChHHHHHHHHhCC----CCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 489 C-----MADLLGRKGKLKEALDFVQSMP----IKSDAG----IWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 489 ~-----l~~~~~~~g~~~~A~~~~~~~~----~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+ |.-+|-..|++-+|.+..++.. ...|.. ....+...|+..|+.+.|..-++.+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 2234445555555555554432 222222 334455556666666666655555443
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=6.5 Score=42.26 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
+..+-+.|+.+|.+.++.+.-.++++.
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 344444555555555555554444444
No 279
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.83 E-value=1.7 Score=35.25 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=12.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.-+|.+.++++.++++.+.+++.+|+
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 33444445555555555555554444
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.79 E-value=15 Score=36.56 Aligned_cols=151 Identities=13% Similarity=-0.025 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHhccCChHHHHHHHHHHHh-hhCCCCCCCh
Q 048321 409 KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP---NRVTFLAVLQACTHTGFLEKGWAISIIQYD-DKGISYNPEL 484 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~p~~ 484 (641)
....+|..++..+.+.|+++.|...+.++...+..+ +......-.......|+-.+|...++.... ... -..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~--~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS--KNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--hcccc
Confidence 345688889999999999999999999988754222 233444445566677888899888887775 211 01011
Q ss_pred hHHHHHHHHhhccCChHHHHHH-HHhCCCCCChhHHHHHHHHHHHc------CCHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 485 DHYSCMADLLGRKGKLKEALDF-VQSMPIKSDAGIWGTLLCACKIH------LNIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
.....+...+.. ..+..... ........-...+..+..-+... ++.+.+...++++.++.|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111100 00000000 00000000012333333333344 7889999999999999998877888777
Q ss_pred HHHHhc
Q 048321 558 NKYALG 563 (641)
Q Consensus 558 ~~~~~~ 563 (641)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 766543
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.73 E-value=2.6 Score=36.96 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC-h------h
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFV--TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD-V------S 177 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~------~ 177 (641)
..+..+...|.+.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....++...--.+. . .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 468889999999999999999999999876555543 478889999999999999888877765432222 2 2
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
+|..|. +...+++..|-+.|-....
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCc
Confidence 222222 2345788888888766654
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.68 E-value=0.023 Score=48.21 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=25.2
Q ss_pred HHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHh
Q 048321 148 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFC 200 (641)
Q Consensus 148 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 200 (641)
+..+.+.+.+.....+++.+...+...+....+.|+..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444445554444433445555555555555555555555544
No 283
>PRK09687 putative lyase; Provisional
Probab=91.58 E-value=13 Score=35.51 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=95.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDL----DEALRLFFAMEAAGELPDLVTVLSMI 352 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll 352 (641)
+|..+....+..+...|..+-...+..-+..+|...=...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444445555444433222222222333444444444555555542 3455555555332 34444333444
Q ss_pred HHhcCcCchH--HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC-ChHH
Q 048321 353 SGCGQSGALE--LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNG-EFVE 429 (641)
Q Consensus 353 ~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 429 (641)
.++...+... ........+...-..++..+-...+.++++.++.+....+..-+..+|...-...+.++.+.+ ....
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4443332110 001111112111113344555555555555555333333333333344433333344444332 1234
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 430 ALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
+...+..+.. .+|...-...+.++.+.|+ ..+...+-...+ . ++ .....+.+++..|.. +|+..+..
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~-~-----~~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK-K-----GT--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc-C-----Cc--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 4444444443 3444444455555555554 233333333331 1 11 122344555555553 45544444
Q ss_pred CC-CCCChhHHHHHHHHH
Q 048321 510 MP-IKSDAGIWGTLLCAC 526 (641)
Q Consensus 510 ~~-~~p~~~~~~~ll~~~ 526 (641)
+. ..||..+-...+.+|
T Consensus 260 l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHhhCCChhHHHHHHHHH
Confidence 43 234444444333333
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.38 E-value=20 Score=37.25 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGICDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISG 354 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 354 (641)
+..+|..-++.-.+.|+.+...-+|++..-| =...|--.+.-....|+.+-|-.++..-.+-.++-.+.+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456777777777778888877777776333 2224444444444457777777666655443332222221111112
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH---HHHhhCCC--CChhHHHHHHHH-----HHHc
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR---ELFYALPE--KIVVSWTTMIAG-----CALN 424 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~~ 424 (641)
+-..|+...|..+++.+...- +.-..+-..-+.+..+.|+.+.+. .++..... .+....+.+.-- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 334567777777777776643 222333333455566667777666 33333322 122222222211 2224
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
++.+.|..++.++.+. ++++...|..++.-+..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 6667777777777664 34444555555554433
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.30 E-value=6.9 Score=31.79 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC
Q 048321 314 TAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL 376 (641)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 376 (641)
+.-+......|+-+.-.+++.++.+. -.+++..+..+..+|.+.|+..++..++..+-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455556666666666666665542 245555566666666666666666666666666553
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.13 E-value=19 Score=39.02 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh---c
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG-LKDNVMVCNALIDMYSK---C 393 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---~ 393 (641)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.|.+.-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445668999999998876 3345677788887777664433222211 2222211 11222556778888876 4
Q ss_pred CCHHHHHHHHhhCCC
Q 048321 394 GSIGDARELFYALPE 408 (641)
Q Consensus 394 g~~~~A~~~~~~~~~ 408 (641)
.+..+|.+.|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 577888888776654
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.07 E-value=0.34 Score=29.29 Aligned_cols=28 Identities=11% Similarity=-0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667778888888888888888885544
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.05 E-value=4.1 Score=35.78 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLM 438 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (641)
.+..+.+.|++.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555555555555555544421 1233444444444455555554444443
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.90 E-value=0.043 Score=46.48 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCC
Q 048321 111 AMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCD 190 (641)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 190 (641)
.+|..+.+.+.+......++.+...+..-+....+.++..+++.+..+....+++ ..+.+-...+++.+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 4567777777888888888888776655566677778888887766666666555 112233344556666666
Q ss_pred ChhHHHHHHhcccC
Q 048321 191 DLKMAELVFCGIEE 204 (641)
Q Consensus 191 ~~~~A~~~~~~~~~ 204 (641)
.+++|.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 66666666655544
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.80 E-value=1.2 Score=41.88 Aligned_cols=76 Identities=7% Similarity=0.019 Sum_probs=62.8
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH-----CCCCCChhhHHHH
Q 048321 177 SVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY-----NGFRLDVTTVVSL 250 (641)
Q Consensus 177 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 250 (641)
.++..++..+..+|+++.+...++++... +-+...|..++.+|.+.|+...|+..|+++.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46677889999999999999999998886 67889999999999999999999999999866 3666665554443
Q ss_pred HH
Q 048321 251 LS 252 (641)
Q Consensus 251 l~ 252 (641)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.79 E-value=5.2 Score=38.42 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCC--hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 428 VEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGF--LEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
+.+..+|+.+...|+..+.. ....+|..+..... +..+.++++.+. +.| +++...+|..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~--~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNG--VKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcC--CccccccccHHHHH
Confidence 55677888888888776554 33344443332222 446777777777 457 77777777766543
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=49 Score=40.64 Aligned_cols=307 Identities=12% Similarity=0.056 Sum_probs=159.4
Q ss_pred HhcCCCchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCChhHH
Q 048321 253 SFVCPEALVQGRLVHSHGIHYGF--DLDVSVINTLISMYSKCGDIDSARVLFDG-ICDRTRVSWTAMISGYAQKGDLDEA 329 (641)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A 329 (641)
+-.+.+.+..|...++.-..... ......+-.+...|+..+++|...-+... ...++ ...-|--....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence 44455556666666555210000 01123344444577777777766655542 22222 22334445667888888
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhhCC
Q 048321 330 LRLFFAMEAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL-IDMYSKCGSIGDARELFYALP 407 (641)
Q Consensus 330 ~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~ 407 (641)
...|+.+.+. .|+ ..+++.++......+.++...-..+...... .+...-++.+ +.+-.+.++++.......
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888765 344 5566666666666676666655444433322 3333333333 444466777776666655
Q ss_pred CCChhHHHHH-H-HHHHHc--CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH----------HHHH
Q 048321 408 EKIVVSWTTM-I-AGCALN--GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS----------IIQY 473 (641)
Q Consensus 408 ~~~~~~~~~l-i-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~----------~~~~ 473 (641)
..+..+|.+. + ..+.+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++. ....
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556554 2 222222 12112223344443321111 12222222221211111 1111
Q ss_pred hhhCCCCCCC------hhHHHHHHHHhhccCChHHHHHHHHhCC----CCC-----ChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 474 DDKGISYNPE------LDHYSCMADLLGRKGKLKEALDFVQSMP----IKS-----DAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 474 ~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-----~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
...+ ..++ ..-|..-...-....+..+-+--+++.. ..| -..+|......++..|.++.|...
T Consensus 1615 ~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 ELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred Hhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111 2222 1222222221111112222222222211 122 245899999999999999999999
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.-++.+..+ +..+...+..++..|+-..|..++++..+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888888774 6899999999999999999999998877544
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.46 E-value=10 Score=37.67 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
...+|..+...|++.|.++.|...+.++....+. .+......+.++...|+-.+|...++.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999886532 4667777899999999999999998887763
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.37 E-value=0.32 Score=26.84 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
.....++.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778888999999999988765
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.29 E-value=29 Score=37.30 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=24.2
Q ss_pred ccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 496 RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
+.++.++|+++.++ ..|...|..|+..+...-.+-.+.
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 33455555555544 568889999998877655544444
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.18 E-value=18 Score=34.64 Aligned_cols=98 Identities=8% Similarity=-0.068 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCcCch---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHH
Q 048321 347 TVLSMISGCGQSGAL---ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---IVVSWTTMIAG 420 (641)
Q Consensus 347 t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 420 (641)
++..++.++...+.. ++|..+.+.+.... +..+.++..-++.+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 344445555544433 33444444443321 222334444455555566666666666666541 22334444333
Q ss_pred H---HHcCChHHHHHHHHHHHHcCCCCCh
Q 048321 421 C---ALNGEFVEALDLFHQLMELDLRPNR 446 (641)
Q Consensus 421 ~---~~~g~~~~A~~~~~~m~~~g~~p~~ 446 (641)
+ .. .....|...+..+....+.|..
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3 22 2334555666555554444443
No 297
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.02 E-value=32 Score=37.35 Aligned_cols=166 Identities=10% Similarity=-0.043 Sum_probs=83.6
Q ss_pred CcccHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCChhh-----HHHHHHHHhccCChhHHHHHHHHHHHHcCC----C
Q 048321 105 DVASWNAMLVGFA-QMGFLENVLRLFYNMRLVGIQADFVT-----VMGLTQAAIHAKHLSLLKSVHSFGIHIGVD----A 174 (641)
Q Consensus 105 ~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~t-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~ 174 (641)
+..++--+...+. ...+++.|...+.+.....-+++..- -..+++.+.+.+... |...++..++.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4455556666665 57778888888886654332222221 223344444444444 77777666553211 1
Q ss_pred ChhHHHHH-HHHhHcCCChhHHHHHHhcccCC---CCC--chhHHHHHHHH--hcCCCchHHHHHHHHHHHCCC------
Q 048321 175 DVSVCNTW-ISSYAKCDDLKMAELVFCGIEER---LRT--VVSWNSMVAGC--TYGDKFDDSLNFYRHMMYNGF------ 240 (641)
Q Consensus 175 ~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------ 240 (641)
-...+.-+ +..+...++...|.+.++.+... ..| +..+-.++.+. .+.+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22222222 22232336777787777766543 122 23333333332 344556777777776643221
Q ss_pred ---CCChhhHHHHHHHhc--CCCchHHHHHHHHHHH
Q 048321 241 ---RLDVTTVVSLLSSFV--CPEALVQGRLVHSHGI 271 (641)
Q Consensus 241 ---~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 271 (641)
.|-..++..++..++ ..|++..+.+.+..+.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455555555543 4555555555544443
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.02 E-value=2.7 Score=41.79 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=75.2
Q ss_pred HcCChHHHHH-HHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 423 LNGEFVEALD-LFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 423 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
..|+...|-+ ++.-++...-.|+.+...+. ...+.|.++.+.+.+....... .....+..|++..+.+.|+++
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~----~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKII----GTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhh----cCCchHHHHHHHhhhchhhHH
Confidence 4566666554 44444444334444444433 3567788888877776655433 355667777777777888888
Q ss_pred HHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 502 EALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 502 ~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+|..+-.-|. .-.++.+...-.......|-++++.-.+++++.++|.....+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 8887777765 112333333334445566777777777777777776533333
No 299
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.81 E-value=33 Score=37.24 Aligned_cols=115 Identities=8% Similarity=-0.047 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHc-CCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 425 GEFVEALDLFHQLMEL-DLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
.+.+.|..++...... ++.+... ....+.......+..+++...++.... ...+......-+..-.+.++++
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-----~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-----RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-----ccCCcHHHHHHHHHHHHccCHH
Confidence 4557777777766433 2222222 222332222222224555555554331 1123333444444444777777
Q ss_pred HHHHHHHhCCC-CCChhHHHH-HHHHHHHcCCHHHHHHHHHHhHc
Q 048321 502 EALDFVQSMPI-KSDAGIWGT-LLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 502 ~A~~~~~~~~~-~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
.+...|..|+. ..+..-|.- +..+....|+.++|...++++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777777761 112222222 33444556777777777777633
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.80 E-value=16 Score=33.65 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=131.0
Q ss_pred CCHHHHHHHHhcCCC----C---CcchHHHHHHHHHhCCChhHHHHHHHHHHH---cCC--CCCHHHHHHHHHHhcCcCc
Q 048321 293 GDIDSARVLFDGICD----R---TRVSWTAMISGYAQKGDLDEALRLFFAMEA---AGE--LPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 293 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~--~p~~~t~~~ll~~~~~~~~ 360 (641)
.++++|+.-|+++.+ + .-.+...+|..+.+.+++++.++.|.+|.. ..+ .-+..+.++++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665521 1 112344567777788888888777777753 111 1233455666665555555
Q ss_pred hHHHHHHHHHHHH-----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-------hhHHHHHHHH
Q 048321 361 LELGKWFDNYACS-----GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--------KI-------VVSWTTMIAG 420 (641)
Q Consensus 361 ~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 420 (641)
.+.-..+++.-.+ .+-..-..+-+-|...|...|.+.+..++++++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5544444443322 11112223334566677777777777777766543 11 2366667777
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHh-----ccCChHHHHHHHHHHHhhhCCCCCCChh---HHHHHH
Q 048321 421 CALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACT-----HTGFLEKGWAISIIQYDDKGISYNPELD---HYSCMA 491 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~p~~~---~~~~l~ 491 (641)
|....+-..-..+|++...-. .-|.+ ....+++-|. +.|.+++|..-|-++-+.+...-.|... -|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 877777777777888776532 23433 3444555553 4577877765444444344322234332 255566
Q ss_pred HHhhccCC----hHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048321 492 DLLGRKGK----LKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVA 539 (641)
Q Consensus 492 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (641)
+++.+.|- -++|.- ....|.......|+.+|.. ++..+-++++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 77776662 222210 0144556677888888865 3444444443
No 301
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=12 Score=33.89 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHH---HHhhccCChHHHHHHHHhCC---CCCChhHHHH---H--HHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMA---DLLGRKGKLKEALDFVQSMP---IKSDAGIWGT---L--LCACKI 528 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l--l~~~~~ 528 (641)
.++++|+..|+..-+=+. +-..+...--|++ ..-+..+++.+|+++|++.. ...+..-|.. + ...|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk-~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYK-GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 456666666666653222 0112222223443 33457788999999998864 2222222322 2 233444
Q ss_pred c-CCHHHHHHHHHHhHccCCCCCcc
Q 048321 529 H-LNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 529 ~-g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
. .|.-.+...+++..+++|.-..+
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCccccc
Confidence 4 68888889999999999975444
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.55 E-value=20 Score=34.30 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCChh---HHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCC-CchhHHHHHHHH
Q 048321 144 VMGLTQAAIHAKHLS---LLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLR-TVVSWNSMVAGC 219 (641)
Q Consensus 144 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 219 (641)
+..++.++...+..+ .+..+++.+... .+..+.++..-+..+.+.++.+++.+.+.+|..... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 444455555444433 233334444222 121233333344555556666666666666655411 334444444443
Q ss_pred hc--CCCchHHHHHHHHHHHCCCCCC
Q 048321 220 TY--GDKFDDSLNFYRHMMYNGFRLD 243 (641)
Q Consensus 220 ~~--~g~~~~A~~~~~~m~~~g~~p~ 243 (641)
-. ......|...+..+...-+.|.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 11 1223445555555544433333
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=4 Score=38.36 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=71.5
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 374 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-K--------IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 374 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
.|.+....+...++..-....+++++...+-.+.. + ...+|-.++. .=++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555556666666667788888888776654 2 2233333332 336789999999999999999
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhh
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 475 (641)
|..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776643
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.35 E-value=0.39 Score=28.33 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+..++.+|...|++++|++.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999987653
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.20 E-value=15 Score=32.32 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH--
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFL--AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC-- 489 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~-- 489 (641)
|..++.... .+.+ +.....+++....-.....++. .+...+...+++++|...++.... .|.-+.+..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~------~t~De~lk~l~ 128 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA------QTKDENLKALA 128 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc------cchhHHHHHHH
Confidence 444444332 3333 5555566666542111111222 234466778888888888877662 233333333
Q ss_pred ---HHHHhhccCChHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 490 ---MADLLGRKGKLKEALDFVQSMPIKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 490 ---l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|.......|.+|+|+..++....+. .+.....-...+...|+.++|+..++++++.+++
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 3466778888999988887755211 1111222335677888888888888888887654
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=38 Score=36.80 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
..+.+..+.+++..+.+.... -++..|..++..+...+..+.-.+...
T Consensus 713 ~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 713 LYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 334455566666666665542 256677777777666665444433333
No 307
>PRK10941 hypothetical protein; Provisional
Probab=88.96 E-value=2.3 Score=40.00 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+--.|-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566678899999999999999999999999988888999999999999999988877664
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.90 E-value=1.7 Score=40.83 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++..++..+...|+.+.+...++++++.+|-+-..|..+...|.+.|+...|+..++.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555555666666666666666666666666666666666666666666666665544
No 309
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.77 E-value=8.9 Score=32.84 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=11.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
+|.-+-.+.|++.+|.+.|..+..
T Consensus 172 ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHHc
Confidence 333344445555555555555544
No 310
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=22 Score=33.61 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=68.8
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----VSWTTMIAGCALNGEFVE 429 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 429 (641)
.....|+...+...++...... +-+..+.-.++.+|...|+.+.|..++..++.... .....-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677778888777777654 33355666788888999999999999988876311 111222333444444444
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 430 ALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
...+-.+.-. .|+. ..-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 4533 344445556666777777765554444
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.70 E-value=1.8 Score=28.93 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccc
Q 048321 553 YVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAY 628 (641)
Q Consensus 553 ~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 628 (641)
...++-.+.+.|++++|.+..+.+.+. +|.+.+.-.....+..++.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999988863 67788777777777788888773
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.66 E-value=5.8 Score=38.13 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 123 ENVLRLFYNMRLVGIQADFVTVMGLT 148 (641)
Q Consensus 123 ~~a~~l~~~m~~~g~~p~~~t~~~ll 148 (641)
++.+++++.|.+.|+.-+..+|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHH
Confidence 34456666677777666666655533
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.65 E-value=1 Score=42.59 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=60.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR 496 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 496 (641)
.+-|.++|.+++|+..|.+.... .| |.+++..-..+|.+...+..|..-...++.. | ...+.+|+|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-------d----~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-------D----KLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-------h----HHHHHHHHH
Confidence 35689999999999999998875 67 8899999999999999888877766665531 1 233455555
Q ss_pred cC-------ChHHHHHHHHhCC-CCCChh
Q 048321 497 KG-------KLKEALDFVQSMP-IKSDAG 517 (641)
Q Consensus 497 ~g-------~~~~A~~~~~~~~-~~p~~~ 517 (641)
.| ...||.+=++... ..|+..
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 54 4555554444433 566643
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.63 E-value=3.6 Score=31.19 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+..+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~----~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG----AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc----CchhhHHHHHH
Confidence 4445666677777778899999999999999999999999999998886655 34456665553
No 315
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.43 E-value=1.2 Score=44.46 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=73.2
Q ss_pred HHHhhccCChHHHHHHHHhCC-CCCChhHHHHH-HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTL-LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
.+-+...+.++.|..++.++. ..||...|.+. ..++.+.+++..|+.-+.++++++|.....|+.-+..+.+.|++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 345567788889998888876 77766655443 3778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048321 569 VANIRTMMKR 578 (641)
Q Consensus 569 A~~~~~~m~~ 578 (641)
|...++....
T Consensus 91 A~~~l~~~~~ 100 (476)
T KOG0376|consen 91 ALLDLEKVKK 100 (476)
T ss_pred HHHHHHHhhh
Confidence 9999887554
No 316
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.21 E-value=0.27 Score=46.53 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=70.8
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHH
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIR 573 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 573 (641)
..|.+++|++.|.... .+|....+..-.+.+.+.+....|++-+..+++++|+....|-.-+......|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4567888888887765 33445555556677778888888899999999999998888888888888999999999999
Q ss_pred HHHHhCCCccCCc
Q 048321 574 TMMKRNQVKKFPG 586 (641)
Q Consensus 574 ~~m~~~~~~~~~~ 586 (641)
....+.+.....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 8888776654433
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.14 E-value=3 Score=32.01 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~----~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG----NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT----T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc----ChHHHHHHHHH
Confidence 4555666666677889999999999999999999999999999887766 44446666654
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.84 E-value=24 Score=33.13 Aligned_cols=61 Identities=11% Similarity=-0.048 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++.....|...|.+.+|.++.++++.++|-+...+..+.++|+..|+--+|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444557789999999999999999999999999999999999999998888888877754
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.82 E-value=17 Score=31.34 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAME 337 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (641)
+..+++.+...|++-+|.++.+....-+...-..++.+-.+.++...-..+|+-..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455566667777777777766544444444555555555555544444444433
No 320
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.36 E-value=32 Score=34.00 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE------KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
..+.-+.+-|..||+++.|.+.+.+... .-+..|-.+|..-.-.|+|........+..+. |+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~-------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--------
Confidence 4566688889999999999999998654 12345656666666677887777777766652 311
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCChhHHHHHHHH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTLLCA 525 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~ 525 (641)
++..... +.+....+..+..+..+ ++..|...|-... +.|..++....+.+
T Consensus 220 --------------~~~~~q~----v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 220 --------------NENLAQE----VPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA 279 (466)
T ss_pred --------------hhhHHHh----cCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence 1111111 33555566666655554 5666665554433 22322222233333
Q ss_pred HHHcCCHHHH-----HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 526 CKIHLNIEIG-----EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 526 ~~~~g~~~~a-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..--+.-+.- -..|+..++++|. ....+..-| .++|....+++++++.+
T Consensus 280 LAtfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 280 LATFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hccCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 3333322222 2346667777775 222233222 35677777777766643
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.26 E-value=0.95 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
.+.-++.+.|+++.|.+..+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566789999999999999999999999643
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.95 E-value=7.4 Score=34.15 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=34.4
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.++.+.+.++.|++-..+.. ..| ....+..-..+|.+...++.|+.-++++++.+|....+
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 34445555555554444433 222 11122222345667778888888889999888875433
No 323
>PRK09687 putative lyase; Provisional
Probab=86.81 E-value=30 Score=33.10 Aligned_cols=131 Identities=10% Similarity=-0.074 Sum_probs=67.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
..+.++.+.++ .+++..+-.+.. .+|...-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 33444444443 344444444443 233333333333444332 12233333333332 44566666677777777
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 394 GSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
|+..-...+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77443333334443333 234567778888874 688888888765 457666666565554
No 324
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.78 E-value=19 Score=30.90 Aligned_cols=121 Identities=14% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh-HHHHH--HHHhhc
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD-HYSCM--ADLLGR 496 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~ 496 (641)
+++.+..++|+.-|..+...|...-++ .-..........|+...|...|+++-.... .|.+. -..-| ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHHHhc
Confidence 455667777777777777665432221 112223345667777777777777764332 22211 11111 234567
Q ss_pred cCChHHHHHHHHhCCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 497 KGKLKEALDFVQSMPIKSD---AGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
.|.+++.....+-+..+.+ ...-.+|.-+-.+.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777777666552222 23445566666778888888888887766
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.64 E-value=1 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++..++.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567899999999999999999988765
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=5.7 Score=37.45 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=70.1
Q ss_pred cCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChh
Q 048321 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVT 245 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (641)
|.+....+...++..-....+++.+...+-++... .++. +-.++++-+. .=++++++.++..=++-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555666666666667777777776666543 1221 1122233332 235678888888888889999999
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhC
Q 048321 246 TVVSLLSSFVCPEALVQGRLVHSHGIHYG 274 (641)
Q Consensus 246 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (641)
+++.+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999988887777655
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.48 E-value=2.8 Score=36.13 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=16.3
Q ss_pred HHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+|+.-+++++.++|+...++.++|++|...|
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3444455555666665566666666655544
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.40 E-value=13 Score=38.58 Aligned_cols=149 Identities=16% Similarity=0.095 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
.-.|+++.|..++..++++ .-+.++..+.++|-.++|+++ .||.. -|... .+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHH
Confidence 3467888888777777643 345566667777777777654 33332 33332 3568888887775
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
.+. .+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+.-..+....-+....|
T Consensus 661 ~e~---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 661 VEA---------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred Hhh---------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 433 345679999999999999999999998765 46777777777888776555555554444333
Q ss_pred CccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 550 AAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.--.+|...|+++++.+++..
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHh
Confidence 334567888999998888754
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.37 E-value=1.1 Score=26.38 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
No 330
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.21 E-value=2.2 Score=25.10 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5666777777777777777777777764
No 331
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.74 E-value=1.2 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhhccCChHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEAL 504 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~ 504 (641)
...|..+..+|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 555555555555555555553
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.50 E-value=1.4 Score=25.65 Aligned_cols=26 Identities=12% Similarity=-0.168 Sum_probs=12.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..++...|+.++|.+.++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444445555555555555554443
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.47 E-value=1.9 Score=24.31 Aligned_cols=29 Identities=14% Similarity=-0.123 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
|..+...+...|+++.|...+++++++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555544
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.30 E-value=0.86 Score=26.55 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.21 E-value=2.3 Score=38.36 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=40.9
Q ss_pred CChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 498 GKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 498 g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.+++.|+..+.+.. ..|.+. -|..-+-.+.+..+++.+..--++++++.|+.......++..+.....+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444444444333 444442 3333333444455555555555566666665555555566666666666666555555
Q ss_pred H
Q 048321 576 M 576 (641)
Q Consensus 576 m 576 (641)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 4
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.08 E-value=7.7 Score=38.76 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=81.1
Q ss_pred HHHHHhcCCHHHHH-HHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 048321 387 IDMYSKCGSIGDAR-ELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF 461 (641)
Q Consensus 387 i~~~~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 461 (641)
|.--...|++-.|. ++|..+.. |+.+...+.| +...|+++.+.+.+...... +.....+..+++...-+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33344567766554 34443332 4444444333 45678999999888776653 34556688888888888999
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
+++|...-+-|.... + -+.+....-...--..|-++++.-.+++.. .+|...-|...++.
T Consensus 373 ~~~a~s~a~~~l~~e---i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 373 WREALSTAEMMLSNE---I-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHHHHhccc---c-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 999988877776322 2 222222222222334577888888888865 55666667666655
No 337
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.45 E-value=26 Score=30.25 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHH
Q 048321 212 WNSMVAGCTYGDKFDDSLNFYRH 234 (641)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~ 234 (641)
+..++..+...|++-+|+++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444455555555555555544
No 338
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.27 E-value=84 Score=36.04 Aligned_cols=182 Identities=11% Similarity=-0.062 Sum_probs=81.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..+.. .++...=.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 4445555555555443211 12233444455555555555555555443321 112221 344444444444555
Q ss_pred ccCChHH-HHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 458 HTGFLEK-GWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 458 ~~g~~~~-a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
..+..+. +...+..+. -.++...-...+..+++.|..+.+...+..+...+|..+-...+.++...+. +++.
T Consensus 768 ~~~~~~~~~~~~L~~ll------~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 768 TLGAGGAPAGDAVRALT------GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HhccccchhHHHHHHHh------cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchH
Confidence 5443322 223333333 1355556666666666666655444444444444555555555555555554 3344
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
..+..+++ +|+ ...-...+..+.+.+.-.++...+...
T Consensus 841 ~~L~~~L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 841 PALVEALT-DPH-LDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHHHhc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44444443 222 333333444444432223444444333
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.82 E-value=5.5 Score=35.20 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=54.6
Q ss_pred hccCChHHHHHHHHhCCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchH
Q 048321 495 GRKGKLKEALDFVQSMPIKS--DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~e 568 (641)
.+.|+ ++|...|-.+...| +....-..+..|....|.+.++.++.+++++.+. |++.+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 67777777776333 3444455556666688999999999999887532 57889999999999999988
Q ss_pred HH
Q 048321 569 VA 570 (641)
Q Consensus 569 A~ 570 (641)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.69 E-value=18 Score=27.81 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|-+.+...+- ....+--.-+..+...|++++|..+.+.+.-||+..|-++... +.|..+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 34566666555554431 1222322334556788999999999999988999999887653 56777777777777877
Q ss_pred cCCCCChhhHHH
Q 048321 440 LDLRPNRVTFLA 451 (641)
Q Consensus 440 ~g~~p~~~t~~~ 451 (641)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 565555544
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.29 E-value=26 Score=29.38 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=34.0
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCC-ChhHHHHHHHHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKS-DAGIWGTLLCACKI 528 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~ 528 (641)
.++.+++..+++.+.--.+ -.|...++. +-.+.+.|++++|+.+|++....+ ....-..|+..|..
T Consensus 23 ~~d~~D~e~lLdALrvLrP--~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP--NLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC--CccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 5666666666666654222 222222332 334556777777777777766322 33333444444433
No 342
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.01 E-value=4.6 Score=38.37 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=72.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC----CCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP----IKS--DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
|--=++-|.+..++..|...|.+-. -.| +.+.|+.-..+-...||+..++.-..+++.++|.+..+|..-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3333467788889999999988754 223 3456666666667889999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHH
Q 048321 561 ALGGRWDGVANIRTMM 576 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m 576 (641)
....++++|..+.++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999988888877665
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=15 Score=38.04 Aligned_cols=123 Identities=16% Similarity=0.066 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 292 CGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
.|+++.|..++..++++ .-+.++.-+-+.|-.++|+++ .+|+..- .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 45666666555555422 223344444455555555543 2222110 11223445555555444332
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
.+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 2334455555555555555555555554432 444444444555544444444444443
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.88 E-value=11 Score=33.42 Aligned_cols=75 Identities=16% Similarity=0.057 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
++|.+.|-.+...+.- +.......+..|....+.+++.+++....+..+..-.++++.+..|+..+-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4555555555554422 22322223333333455556666555555443322244555555555555555555554
No 345
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.57 E-value=6.9 Score=35.49 Aligned_cols=89 Identities=15% Similarity=-0.021 Sum_probs=67.9
Q ss_pred HHHhhccCChHHHHHHHHhCC---------CCCChhHHHHH--------HH---HHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 491 ADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTL--------LC---ACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l--------l~---~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+-+.+.|++.||..-+.++. .+|-..-|.-| ++ .+...|++-++++.-..++..+|+|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 345667788888777766642 45655555432 22 33467899999999999999999999
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|+..+.+.+..=+.+||..-+....+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999999998999999988887764
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.27 E-value=1.1e+02 Score=35.11 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=91.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHhcCcC--chHHHHHHHHHHHHcC--------CCCc
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAA-----GELPDL--VTVLSMISGCGQSG--ALELGKWFDNYACSGG--------LKDN 379 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~--~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~~ 379 (641)
+-+-..+.++.+=+-+++++.+. ..+.|. .-|...+......| -+++++.+. .+.| ..|+
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I---~kh~Ly~~aL~ly~~~ 934 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYI---KKHGLYDEALALYKPD 934 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHH---HhcccchhhhheeccC
Confidence 33444566777777776666532 122222 12344444444444 334433332 2222 1344
Q ss_pred hhH----HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHH
Q 048321 380 VMV----CNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV--TFLAVL 453 (641)
Q Consensus 380 ~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 453 (641)
... |.+..+-+...+.+++|.-.|+..-+ ..--+.+|...|+|.+|+.+..++.. .-|.. +-..|.
T Consensus 935 ~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 935 SEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHH
Confidence 433 33344444456666666666665543 12235667777777777777766643 12222 224566
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
.-+...++.-+|-++...... .| .--+..|+++..+++|+.+.....
T Consensus 1007 s~L~e~~kh~eAa~il~e~~s------d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS------DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhc------CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 667777777777777655442 12 234566777778888887766544
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=44 Score=30.43 Aligned_cols=53 Identities=0% Similarity=-0.245 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCc-------cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAA-------PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
...+++.+|+.+++++..-.-+|+- ++..-+-++.-.++.-.+...+++-.+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 4678899999999988665444432 2222333344445655566666665554
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.68 E-value=4.1 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666677777777776666654
No 349
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=80.53 E-value=67 Score=32.26 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048321 109 WNAMLVGFAQMGFLENVLRLFYNMRL 134 (641)
Q Consensus 109 ~~~li~~~~~~g~~~~a~~l~~~m~~ 134 (641)
-|-.+.-|+..|+..+|.+..+++..
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 45566778888888888877777643
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.17 E-value=95 Score=33.23 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHH----HH-HHhcCCHHHHHHHHhcCCC--------CCcchHHHHHHHHHhCC--
Q 048321 260 LVQGRLVHSHGIHYGFDLDVSVINTLI----SM-YSKCGDIDSARVLFDGICD--------RTRVSWTAMISGYAQKG-- 324 (641)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-- 324 (641)
...+.+.++...+.| +......+. .+ +....+++.|..+|....+ -+....+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 445666777766665 222222222 22 3345677777777765522 13334455555555532
Q ss_pred ---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-cCchHHHHHHHHHHHHcC
Q 048321 325 ---DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ-SGALELGKWFDNYACSGG 375 (641)
Q Consensus 325 ---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 375 (641)
+.+.|+.+|.+.-..| .|+...+...+.-... ..+...|.+++....+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3445666666555554 2444333332222222 234456666666665555
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.52 E-value=28 Score=26.78 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=43.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048321 286 ISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVL 349 (641)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 349 (641)
+..+...|++++|..+.+.++-||...|-+|-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667888999999988888888888887755 35666676766676776665 45555544
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.51 E-value=4.2 Score=30.90 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=20.4
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+++.++.+|+|...-..++..|...|++++|.+.+-.+..
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544443
No 353
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.32 E-value=8.9 Score=34.83 Aligned_cols=63 Identities=11% Similarity=-0.071 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHcCCHHH-------HHHHHHHhHccCC--C----CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 517 GIWGTLLCACKIHLNIEI-------GEYVAYCLFKLEP--H----SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+..+.+.|+..|+.+. |...++++++.+. . .......+|.++.+.|++++|.+.+..+...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 356667788888888554 4444555554432 2 2356778999999999999999999988764
No 354
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=78.25 E-value=74 Score=31.43 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=89.2
Q ss_pred HHHHHHhhccCChHHHHHHHHhCCCCC------C--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC---CCC----Ccc
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMPIKS------D--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE---PHS----AAP 552 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~ 552 (641)
..|...+..+|+.++|.+++.+.+... . +.-..--+..|...+|+-.|.-+.+++.... |+- ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 445677889999999999999987221 0 1111223567888999999998888775432 321 246
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHH
Q 048321 553 YVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDC 618 (641)
Q Consensus 553 ~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 618 (641)
|..++.+....+.+=++-+.++..-+-|-.+....-|+.+-..+-.|..- -|...+-...+.+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L---Ap~dneQsdll~~ 277 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL---APHDNEQSDLLAR 277 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee---cCCCcHHHHHHHH
Confidence 88899999999999999999999988887777666788877666555443 3444444433333
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.93 E-value=27 Score=32.32 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=111.2
Q ss_pred CCCCchhHHHHHHHHH-HhcCCHHHHHHHHhhCCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCC
Q 048321 375 GLKDNVMVCNALIDMY-SKCGSIGDARELFYALPE-------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL---DLR 443 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 443 (641)
+-.||+..-|..-..- .+...+++|+.-|++..+ ....+.-.||..+.+.|++++.++.|.+|..- .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3445554444322211 233456677777766543 13345566777778888888888777777541 111
Q ss_pred --CChhhHHHHHHHHhccCChHHHHHHHHHHHhhhC--CCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---C----
Q 048321 444 --PNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKG--ISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---I---- 512 (641)
Q Consensus 444 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~---- 512 (641)
-+..+.++++.-.+.+.+.+--..+|+.-.+... .+-..-..+-+.|...|...|.+.+-.++++++. .
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2334667777766655555554444443332111 0011112334567777777777777777776653 0
Q ss_pred CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC--CccH----HHHHHHHHhcCCchHHHH-HHHHH
Q 048321 513 KSD-------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS--AAPY----VEMANKYALGGRWDGVAN-IRTMM 576 (641)
Q Consensus 513 ~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~----~~l~~~~~~~g~~~eA~~-~~~~m 576 (641)
..| ..+|..-+..|....+-..-..++++++.+...- |... .|=+.+..+.|+|++|.. +|+..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 011 1244445566777777777778888877654332 2221 233456778899998865 44444
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.53 E-value=54 Score=29.49 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc-hHHHHHH--HHHhCCChhHHHHHHHHHHHc
Q 048321 279 VSVINTLISMYSKCGDIDSARVLFDGICDRTRV-SWTAMIS--GYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 339 (641)
+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+-. ++---|++.-|.+-|...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 577888888888888888888888887555443 2322222 223357777777766665554
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.32 E-value=9.4 Score=34.07 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
...-+..+.+.+++++|+...++-. .+| |...-..|+..++..|++++|..-++-+-.+.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445667778888888888776643 455 555666777888889999999988888888888753
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.15 E-value=93 Score=32.00 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC 456 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 456 (641)
|....-++++.++.....+-.+.+..+|.. .+-..|..++..|..+ ..+.-..+|+++.+.. -|.+.+..-+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 334444455555555555555555554443 3344555555555555 3355555555555542 2333333333322
Q ss_pred hccCChHHHHHHHHHHH
Q 048321 457 THTGFLEKGWAISIIQY 473 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~ 473 (641)
...++.+.+..+|..+.
T Consensus 142 yEkik~sk~a~~f~Ka~ 158 (711)
T COG1747 142 YEKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHhchhhHHHHHHHHH
Confidence 23355555555555554
No 359
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.80 E-value=69 Score=30.35 Aligned_cols=124 Identities=12% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCChhhHHHHHHHHhc-cC-ChhHHHHHHHHHHHH-cCCCChhHHHHHHH
Q 048321 109 WNAMLVGFAQMGFLENVLRLFYNMRL-VGIQADFVTVMGLTQAAIH-AK-HLSLLKSVHSFGIHI-GVDADVSVCNTWIS 184 (641)
Q Consensus 109 ~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~ 184 (641)
|..|+. ++....+|+.+|+...- ..+--|..+...+++.... .+ ....--++.+.+... |-.++..+....+.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 655554 24456777888774332 3466777777888877765 22 233333444444432 35667778888899
Q ss_pred HhHcCCChhHHHHHHhcccCC---CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCC
Q 048321 185 SYAKCDDLKMAELVFCGIEER---LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNG 239 (641)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 239 (641)
.+++.+++..-.++++..... ..|...|..+|......|+..- .+++...|
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~----~~kiI~~G 264 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV----MRKIIDDG 264 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH----HHHHhhCC
Confidence 999999999999998876554 4578899999999999999664 44555555
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.80 E-value=5.3 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 554 VEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 554 ~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999999887643
No 361
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.72 E-value=22 Score=27.12 Aligned_cols=60 Identities=8% Similarity=-0.042 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 123 ENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 123 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.... ..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 3455555666666677888888888888888888888888887666321 11333555444
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.81 E-value=4.8 Score=22.42 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..|..++.+|...|++++|...++....
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987654
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.40 E-value=1.1e+02 Score=31.51 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
.-+++..+.++....-...+-.+|..-| .+...|..++..|... ..+.-..+|+++.+..+. |......|++.|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3344445555544555555555554432 2344444455554444 333444455554444322 23333334444433
Q ss_pred cCCHHHHHHHHhh
Q 048321 393 CGSIGDARELFYA 405 (641)
Q Consensus 393 ~g~~~~A~~~~~~ 405 (641)
++.+.+...|..
T Consensus 145 -ik~sk~a~~f~K 156 (711)
T COG1747 145 -IKKSKAAEFFGK 156 (711)
T ss_pred -hchhhHHHHHHH
Confidence 444444444443
No 364
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.35 E-value=40 Score=26.38 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 56777777777777653 333344444556778889998855555566688888887754 467777888877777766
Q ss_pred cCCCCChhhHH
Q 048321 440 LDLRPNRVTFL 450 (641)
Q Consensus 440 ~g~~p~~~t~~ 450 (641)
.| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.76 E-value=23 Score=28.52 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+..+-++.+....+.|++......|.||.+.+++..|.++|+-++.+.| +....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g----~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG----AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc----cHHHHHHHHHH
Confidence 4445566666777899999999999999999999999999999987665 44445665553
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.75 E-value=1.2e+02 Score=31.06 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=65.0
Q ss_pred HHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhH--HHHHHHhcCCC
Q 048321 183 ISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTV--VSLLSSFVCPE 258 (641)
Q Consensus 183 l~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~ 258 (641)
+...+..|+.+.+..+++.-... ..+..-++.+ ...+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44455666666666666543221 0111112222 223334443 455555566655543221 22333334455
Q ss_pred chHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhCCChhHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVS--VINTLISMYSKCGDIDSARVLFDGICDRTRV---SWTAMISGYAQKGDLDEALRLF 333 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 333 (641)
+.+.+.. +.+.|..++.. ...+.+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 5544333 33444333221 1112333444567776666666544333322 1123344334455543 34
Q ss_pred HHHHHcCCCCCH
Q 048321 334 FAMEAAGELPDL 345 (641)
Q Consensus 334 ~~m~~~~~~p~~ 345 (641)
+-+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444556666654
No 367
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.35 E-value=28 Score=26.96 Aligned_cols=59 Identities=7% Similarity=-0.053 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 124 NVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 124 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 444555555556677888888888888888888888888877766432 22222555554
No 368
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.27 E-value=70 Score=28.32 Aligned_cols=86 Identities=12% Similarity=-0.014 Sum_probs=40.6
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhH--HHHHHHHHHHcCChHHH
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDN--VMVCNALIDMYSKCGSIGDARELFYALPEKIVVS--WTTMIAGCALNGEFVEA 430 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A 430 (641)
+...++++.|...++......-..+ ..+--.|.......|.+++|...++....++-.+ -..-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4445555555555554443211111 1111223444455566666666666555543222 22223445556666666
Q ss_pred HHHHHHHHHc
Q 048321 431 LDLFHQLMEL 440 (641)
Q Consensus 431 ~~~~~~m~~~ 440 (641)
..-|++..+.
T Consensus 179 r~ay~kAl~~ 188 (207)
T COG2976 179 RAAYEKALES 188 (207)
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 369
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.24 E-value=1.4e+02 Score=33.63 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHh
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQ 47 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 47 (641)
-|..|+.-|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488999999999999999999998876
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.87 E-value=1.1e+02 Score=30.50 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=24.6
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCC--ChhHHHHHHHHhh-ccCChHHHHHHHHh
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNP--ELDHYSCMADLLG-RKGKLKEALDFVQS 509 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 509 (641)
.+.+.|-+..|.++.+.+.. +.| |+...-.+||.|+ ++++++--+++++.
T Consensus 112 ~L~~RG~~rTAlE~~KlLls-----Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLS-----LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHh-----cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 44555666666665555553 223 2333334444443 55555555555554
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.17 E-value=86 Score=30.74 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=73.8
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh---cCCchHHHHHHHH
Q 048321 501 KEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL---GGRWDGVANIRTM 575 (641)
Q Consensus 501 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~eA~~~~~~ 575 (641)
+.-+.+++++. .+.+...+..++..+.+.-+.+...+-+++++..+|+++..|....+.... .-.+++..+++.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 44455565543 334566788888888888899999999999999999988888877775544 2346677777766
Q ss_pred HHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHH----HHHHHHHHHHHHccccC
Q 048321 576 MKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTY----PVLDCLALHSREEAYSS 630 (641)
Q Consensus 576 m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~~~~~g~~~ 630 (641)
....-.....+. -..|+...+.. ..+-++...++++||..
T Consensus 128 ~l~~L~~~~~~~---------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 128 CLRALSRRRSGR---------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHhhccc---------------cccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 543211111110 12344443333 34456778889999964
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.88 E-value=13 Score=28.51 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCC---------CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHS---------AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+.||+..|.+.+.+.++..... ..+...++.++...|++++|.+.+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888888888777653321 12345678889999999999999888754
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.51 E-value=18 Score=31.39 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccC
Q 048321 462 LEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKG 498 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 498 (641)
+++|..-|+.++. +.|+ ...+.++..+|...+
T Consensus 51 iedAisK~eeAL~-----I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK-----INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-----H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHH
Confidence 4445555555554 4566 466777777776544
No 374
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.01 E-value=1e+02 Score=29.27 Aligned_cols=54 Identities=7% Similarity=0.056 Sum_probs=26.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEA 430 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A 430 (641)
.++..+...+++.+++.+++..-.++++.... .|...|...|......|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 34444444555555555555555555443322 3445555555555555554433
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.78 E-value=69 Score=32.26 Aligned_cols=53 Identities=6% Similarity=-0.037 Sum_probs=29.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHh--ccCChHHHHHHHHHHHh
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACT--HTGFLEKGWAISIIQYD 474 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~ 474 (641)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33566777777777777765 444443 2333333333 34456677777766553
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.14 E-value=55 Score=34.07 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred HhccCChHHHHHHHHHHHhhhCCC-----CCCChhHHHHHH---HHhhccCChHHHHHHHHhCC------CCCCh-----
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGIS-----YNPELDHYSCMA---DLLGRKGKLKEALDFVQSMP------IKSDA----- 516 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~-----~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~------~~p~~----- 516 (641)
+.+...++++.+.|......+..+ +..++.|...|+ +.+-.+|+.+-|-+++++.. ..|..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ---------------hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC-CCccHHHHHHHHH-hcCCchHHHHHHHHH-Hh
Q 048321 517 ---------------GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH-SAAPYVEMANKYA-LGGRWDGVANIRTMM-KR 578 (641)
Q Consensus 517 ---------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~eA~~~~~~m-~~ 578 (641)
.+....+....+.|=+..|.+..+-++.++|. ||-....++++|+ ++.+|+=-+++++.. ..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred CCCccCCceeE
Q 048321 579 NQVKKFPGQSL 589 (641)
Q Consensus 579 ~~~~~~~~~s~ 589 (641)
+.+...|-..+
T Consensus 408 n~l~~~PN~~y 418 (665)
T KOG2422|consen 408 NKLSQLPNFGY 418 (665)
T ss_pred ccHhhcCCchH
No 377
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.13 E-value=1.4e+02 Score=30.64 Aligned_cols=409 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC-hhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKH-LSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
|+..|...|.-+-+.+.+.+.-.+|.+|.... +-++..|.....-....+. ++.++.++...++.+.. ++..|-...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~eyf 181 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWKEYF 181 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHHHHH
Q ss_pred HHhH----------------------cCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 184 SSYA----------------------KCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 184 ~~~~----------------------~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
++-. .-.+.+.+...+..-... .-.+..-+ ....-......+-.+-.-.-...+.
T Consensus 182 rmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d~~kel~k~i~d~~~~~~ 259 (568)
T KOG2396|consen 182 RMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE--LSVAEKFDFLKELQKNIIDDLQSKA 259 (568)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc--hHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC--CCCCcchHHHHHH
Q 048321 241 RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI--CDRTRVSWTAMIS 318 (641)
Q Consensus 241 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~ 318 (641)
+-|+.++ .+.|...++-.. ..+...+...-..+--..+.+....+|++. .-++...|+..|.
T Consensus 260 ~~np~~~------------~~laqr~l~i~~----~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~ 323 (568)
T KOG2396|consen 260 PDNPLLW------------DDLAQRELEILS----QTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYIT 323 (568)
T ss_pred CCCCccH------------HHHHHHHHHHHH----HhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHhCCChhHHHHHHHHH-----HHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 319 GYAQKGDLDEALRLFFAM-----EAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m-----~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
.|...-....-..+.+.| ...+......-+...............+...-..+...++..+...|..-+......
T Consensus 324 ~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s 403 (568)
T KOG2396|consen 324 FCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIES 403 (568)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhh
Q ss_pred CCHHHHHHHHhh--------CCCCChhHHHHHH-HHHHHcCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHhccCChH
Q 048321 394 GSIGDARELFYA--------LPEKIVVSWTTMI-AGCALNGEFVEALDLFHQLMELDLRPNRVTF-LAVLQACTHTGFLE 463 (641)
Q Consensus 394 g~~~~A~~~~~~--------~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~ 463 (641)
.. ++.-+|.+ +..+-..+|++.. ....+....+..+..+..+. .|+..|+ +.++.-+...|-++
T Consensus 404 ~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l~~~~e~~~~~ 477 (568)
T KOG2396|consen 404 KS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI----GADSVTLKSKYLDWAYESGGYK 477 (568)
T ss_pred cc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc----CCceeehhHHHHHHHHHhcchH
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHH---HHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMA---DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
+|+..+..+....| |+...|..+| .-...+| +..+..+++.|. +..|+..|...+.--..+|..+.+-.+
T Consensus 478 ~ark~y~~l~~lpp----~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~ 552 (568)
T KOG2396|consen 478 KARKVYKSLQELPP----FSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQI 552 (568)
T ss_pred HHHHHHHHHHhCCC----ccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHH
Q ss_pred HHHhHc
Q 048321 539 AYCLFK 544 (641)
Q Consensus 539 ~~~~~~ 544 (641)
+.++.+
T Consensus 553 ~~ra~k 558 (568)
T KOG2396|consen 553 YWRAMK 558 (568)
T ss_pred HHHHHH
No 378
>PRK10941 hypothetical protein; Provisional
Probab=69.13 E-value=28 Score=32.89 Aligned_cols=66 Identities=8% Similarity=-0.082 Sum_probs=51.0
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+.+-..|.+.++++.|+.+.+.+. ..| |+.-|.--.-.|.+.|.+..|..-++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344567788888888888888876 444 556677777778889999999999999999888876543
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.08 E-value=17 Score=37.57 Aligned_cols=100 Identities=14% Similarity=-0.075 Sum_probs=68.1
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
-.|+...|...+..+....+ .+.+ .....|..++.+.|..-+|..++.... ....+.++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p--~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAP--LQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhccCh--hhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35777788777777664333 2222 234456667777777778887776644 333456777788888888889999
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHH
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
++.++.+++++|+++..-..|-.+-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999998888876655554443
No 380
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=69.04 E-value=93 Score=32.40 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 384 NALIDMYSKCGSIGDARELFYALPEK--IVV---SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
..++.-|.+.+++++|..++..|.-. ... +.+.+++.+.+..-..+....++.+...=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 35777899999999999999988642 222 3344445555554445555555555543233333222222211211
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
-=.+-|+++|. -+.|.+++++|..+--++. +...+.-+-..-...|+.+.|.
T Consensus 492 -~V~~~aRRfFh----------------------hLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARRFFH----------------------HLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHHHHH----------------------HHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 01122333333 3446677888877766554 2233333333444556666554
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.92 E-value=8 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 530 LNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766654
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.92 E-value=15 Score=26.83 Aligned_cols=14 Identities=0% Similarity=-0.285 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHH
Q 048321 460 GFLEKGWAISIIQY 473 (641)
Q Consensus 460 g~~~~a~~~~~~~~ 473 (641)
...++|+..|....
T Consensus 20 ~~~~~Al~~W~~aL 33 (80)
T PF10579_consen 20 NETQQALQKWRKAL 33 (80)
T ss_pred chHHHHHHHHHHHH
Confidence 33444444444444
No 383
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.22 E-value=1.9e+02 Score=30.98 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHCCCCCChhhH-HHHHHH-hcCCCchHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcC--
Q 048321 225 FDDSLNFYRHMMYNGFRLDVTTV-VSLLSS-FVCPEALVQGRLVHSHGIH-------YGFDLDVSVINTLISMYSKCG-- 293 (641)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g-- 293 (641)
...|.++++.....|..-..... .....+ .....+.+.|...+..+.+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34567777766666532111111 111222 4455677777777777766 34 3334555666666533
Q ss_pred ---CHHHHHHHHhcCCCC-CcchHHHHHHHHHhC---CChhHHHHHHHHHHHcCC
Q 048321 294 ---DIDSARVLFDGICDR-TRVSWTAMISGYAQK---GDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 294 ---~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~ 341 (641)
+.+.|..++...... ++..--.+...|..- .+...|.++|...-+.|.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 445566666554221 222222222222221 345677777777666654
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.70 E-value=57 Score=24.76 Aligned_cols=63 Identities=16% Similarity=0.003 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC--CccHHHHHHHHHhcCCc-hHHHHHHHHH
Q 048321 514 SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS--AAPYVEMANKYALGGRW-DGVANIRTMM 576 (641)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~-~eA~~~~~~m 576 (641)
.|......+...+...|+++.|.+.+-.+++.+|+. ...-..+..++...|.- .-+.+.+++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 355667777788888889999888888888887753 45566777777777773 3555566555
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.70 E-value=1.2e+02 Score=28.68 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHH-----HhCCCCchhHHH
Q 048321 214 SMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGI-----HYGFDLDVSVIN 283 (641)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~~~ 283 (641)
...+.|..+|.+.+|.++-+....-. +.+...+-.+++.+...|+--.+..-++.+. +.|+..|..+++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34455666677777766666655432 2345555566666666666444444443332 235555555443
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.47 E-value=1.3e+02 Score=28.42 Aligned_cols=29 Identities=21% Similarity=-0.048 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGI 305 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 305 (641)
.|+.....+...|.+.|++.+|+..|-.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 46677888888888888888888777544
No 387
>PRK13342 recombination factor protein RarA; Reviewed
Probab=63.71 E-value=1.8e+02 Score=29.78 Aligned_cols=99 Identities=16% Similarity=0.073 Sum_probs=54.6
Q ss_pred CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHH
Q 048321 241 RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMI 317 (641)
Q Consensus 241 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 317 (641)
..+......++..+ .|+...+..+++.+...+...+ .+....++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44445555555443 6777777777776654321111 11222222211 122223344455
Q ss_pred HHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 048321 318 SGYAQ---KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ 357 (641)
Q Consensus 318 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 357 (641)
+++.+ .++.+.|+..+..|.+.|..|....-..++.++..
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 55554 47899999999999999888876655555544433
No 388
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.57 E-value=74 Score=30.53 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=32.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHhccCChHHHHHHHHH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRV---TFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
.+..+-.+.|+..+|.+.|+.+.+. .|-.. ....++.+|.....+.+...++.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555678888888888877764 33221 234466677666655555555443
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.22 E-value=1.7e+02 Score=29.93 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=52.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH--HHHHHHHhH
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFV---TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV--CNTWISSYA 187 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 187 (641)
+...+..|+.+.+..+++. |...+.. .-.+.+...+..|+. ++.+.+++.|..|+... ..+.+...+
T Consensus 72 L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 4455667777665555442 3111110 011223333344554 34445555565554321 123344555
Q ss_pred cCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCCh
Q 048321 188 KCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDV 244 (641)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 244 (641)
..|+.+-+..+++.-... ..|..-++.+..+ +..|+ .++++.+.+.|..|+.
T Consensus 144 ~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~----~eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 144 MMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGD----IAICKMLLDSGANIDY 196 (413)
T ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHhCCCCCCc
Confidence 667766666655543221 1233333333332 22333 2344445555655543
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.55 E-value=16 Score=32.96 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=43.9
Q ss_pred HhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 493 LLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+....|+.+.|.+++++.. .-| ....|..+...--+.|+.+.|.+.+++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4456777788888887765 333 56688888888888888888888898888888875
No 391
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.04 E-value=1.8e+02 Score=29.14 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=48.5
Q ss_pred ChhHHHHH---HHHHHHcCCHHHHHHHHHHhHccCCC-CCccHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 048321 515 DAGIWGTL---LCACKIHLNIEIGEYVAYCLFKLEPH-SAAPYVEMANKYA-LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~eA~~~~~~m~~ 578 (641)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 45667889999999999999999998 8888888888877 56778777777776544
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.16 E-value=17 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=14.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 048321 417 MIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666643
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.07 E-value=20 Score=26.20 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=33.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-h-hhHHHHHHHHhccCChHHHHHH
Q 048321 423 LNGEFVEALDLFHQLMELDLRPN-R-VTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
...+.++|+..|+...+.-..|. . .++..++.+++..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999998887633332 2 2777788899999988887665
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.79 E-value=77 Score=26.59 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=58.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHhccCC-hhHHHHHHHHHHHHcCCCChhHHHH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVG-----IQADFVTVMGLTQAAIHAKH-LSLLKSVHSFGIHIGVDADVSVCNT 181 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (641)
..|+++.-.+..+++...+.+++.+.... -..+..+|.+++++.+.... --.+..++..+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46778887788888888888888774321 12345568888888876665 4556677788877777778888888
Q ss_pred HHHHhHcC
Q 048321 182 WISSYAKC 189 (641)
Q Consensus 182 ll~~~~~~ 189 (641)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 87776554
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.62 E-value=1.1e+02 Score=32.99 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=102.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH----------HHHHHHHhcCcCchHHHHHHHHHHHHc-C-CCCc
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVT----------VLSMISGCGQSGALELGKWFDNYACSG-G-LKDN 379 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----------~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~ 379 (641)
+-..++-.|-...+++...++.+.+... ||..- |.-.+.---+-|+-++|..+.--+++. | +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3445566677777788888888877653 54322 222233333456667776665555542 2 2333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV---TFLAVLQAC 456 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~ 456 (641)
+||-||++- +.|- +-+.|...+..+.|.+.|++..+. .|+.. .+..|+.+-
T Consensus 280 ---------m~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHh
Confidence 456666542 2221 112344455667788888888763 67654 344444432
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
.+ .++...++- . .-..|-.+++|.|.++.-.++|+- ...+.+-.-.+|+.+|.
T Consensus 334 G~--~Fens~Elq-----~----------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kai 386 (1226)
T KOG4279|consen 334 GE--HFENSLELQ-----Q----------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAI 386 (1226)
T ss_pred hh--hccchHHHH-----H----------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHH
Confidence 22 122221111 0 112234567899998888777754 23345556678999999
Q ss_pred HHHHHhHccCCC
Q 048321 537 YVAYCLFKLEPH 548 (641)
Q Consensus 537 ~~~~~~~~~~p~ 548 (641)
++.+.++++.|.
T Consensus 387 qAae~mfKLk~P 398 (1226)
T KOG4279|consen 387 QAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHhccCCc
Confidence 999999999885
No 396
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.51 E-value=2.6e+02 Score=30.60 Aligned_cols=229 Identities=12% Similarity=-0.020 Sum_probs=117.0
Q ss_pred CCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 323 KGDLDEALRLFFAMEAAG-ELPDLV--TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 399 (641)
..+.+.|..++....... ..+... ....+.......+..+.+...++...... .+..+...-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777664432 222221 12222222222212445555554433221 2334444455555577888888
Q ss_pred HHHHhhCCC--CChhHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhh
Q 048321 400 RELFYALPE--KIVVSW-TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDK 476 (641)
Q Consensus 400 ~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 476 (641)
...+..|.. .+...| -=+..++...|+.++|...|+++.. . .+|-.++.+ .+.|..-. ...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~-~~~-------- 395 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYP-LKI-------- 395 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCC-CCC--------
Confidence 888877754 121122 2244555667888888888887632 1 234444432 11221100 000
Q ss_pred CCCCCCCh------hHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc---CC
Q 048321 477 GISYNPEL------DHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL---EP 547 (641)
Q Consensus 477 ~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p 547 (641)
. ..|.. ..-..-+..+...|+..+|...+..+....+......+.......|..+.++....+.... +-
T Consensus 396 ~--~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~ 473 (644)
T PRK11619 396 D--KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE 473 (644)
T ss_pred C--CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH
Confidence 0 00000 0111224556677999999888877664455556666666667888888888877654221 11
Q ss_pred CCCccHHHHHHHHHhcCCchHHHH
Q 048321 548 HSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
..|..|.-...-+.+.-..+.+.-
T Consensus 474 rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 474 RFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred hCCcchHHHHHHHHHHcCCCHHHH
Confidence 224456666666666555665553
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.75 E-value=27 Score=21.06 Aligned_cols=29 Identities=10% Similarity=-0.145 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHhHccCC
Q 048321 519 WGTLLCACKIHLNIEIGEYV--AYCLFKLEP 547 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p 547 (641)
|-.+...+...|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34444555555666666666 324444444
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.30 E-value=49 Score=27.25 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=27.8
Q ss_pred CChhhHHHHHHHHhccCC---hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 444 PNRVTFLAVLQACTHTGF---LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 444 p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
++..+--.+..++.++.+ +.+++.+++.+.+... -....+....|.-++.|.++++++..+++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH--PERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC--cccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 333344444444544432 3445555555553111 111122233334445555555555555544
No 399
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.82 E-value=1.4e+02 Score=27.03 Aligned_cols=128 Identities=14% Similarity=0.066 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
|.+..++.+.+.+...+|+...++-.+. +|... +-..++..++-.|++++|..-++...+ ......+....|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~-l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT-LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh-cCcccchHHHHHHHHH
Confidence 3445567788888899999988887776 56554 555567788889999999877776653 2211234455566555
Q ss_pred HHhhccCChHHHH-HHHHhC--C-CCC-ChhHHHHHH-HHH--HHcCCHHHHHHHHHHhHccCCCCC
Q 048321 492 DLLGRKGKLKEAL-DFVQSM--P-IKS-DAGIWGTLL-CAC--KIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 492 ~~~~~~g~~~~A~-~~~~~~--~-~~p-~~~~~~~ll-~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+- .+. ++|..= | +.- ....|...+ .+. ...|.-+....+-+.+++.-|...
T Consensus 80 r~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 442 222 233321 2 111 234555444 333 233355556666677788777643
No 400
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.57 E-value=93 Score=29.30 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=74.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-------HHHHHHHHhccCChhHHHHHHHHHHH----HcCCCChhHHH
Q 048321 112 MLVGFAQMGFLENVLRLFYNMRLVGIQADFVT-------VMGLTQAAIHAKHLSLLKSVHSFGIH----IGVDADVSVCN 180 (641)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 180 (641)
+.+-.++.+++++|+..+.+....|+..|..+ ..-+.+.+...|+.....+....... ..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556778899999999999999888777654 45567777777776655544433222 11122233444
Q ss_pred HHHHHhHcC-CChhHHHHHHhcccCC-CC------CchhHHHHHHHHhcCCCchHHHHHHHH----HHHCCCCCChhh
Q 048321 181 TWISSYAKC-DDLKMAELVFCGIEER-LR------TVVSWNSMVAGCTYGDKFDDSLNFYRH----MMYNGFRLDVTT 246 (641)
Q Consensus 181 ~ll~~~~~~-g~~~~A~~~~~~~~~~-~~------~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t 246 (641)
+|+..+... ..++.-.++.....+. .+ -...-.-+|..+.+.|++.+|+.+... +++-.-+|+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 555444332 2344444444333221 00 011123466777778888877765443 333344444444
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.17 E-value=35 Score=30.42 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=29.3
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 512 IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 512 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
..|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 567888888888888888888888888888888877
No 402
>PRK12798 chemotaxis protein; Reviewed
Probab=58.11 E-value=2.1e+02 Score=28.82 Aligned_cols=180 Identities=15% Similarity=0.152 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHhhCCC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCChH
Q 048321 393 CGSIGDARELFYALPE----KIVVSWTTMIAGCA-LNGEFVEALDLFHQLMELDLRPNRV----TFLAVLQACTHTGFLE 463 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~ 463 (641)
.|+-++|.+.+..+.. +....|-.|+.+-. ...++..|+.+|+..+-. -|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999988875 34556777766543 457899999999998864 55433 4444455668889999
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHH-HHHHHhhccC---ChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYS-CMADLLGRKG---KLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVA 539 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (641)
++..+-..-.+.+. ..|-...|. .++..+.+.+ ..+.-..++..|.-.--...|..+...-...|+.+.|....
T Consensus 203 rf~~la~~Y~rRF~--~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFR--HSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 98877777766766 555544443 2333443333 34455556666652223458888888889999999999999
Q ss_pred HHhHccCCCCCccHHHHHHHHHh-----cCCchHHHHHHHHHH
Q 048321 540 YCLFKLEPHSAAPYVEMANKYAL-----GGRWDGVANIRTMMK 577 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~-----~g~~~eA~~~~~~m~ 577 (641)
+++..+.+. ...-...+.+|.. ..+.++|.+.++.+.
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 999988743 3444455555554 344666666655443
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.60 E-value=94 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888889888888876
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.05 E-value=52 Score=26.90 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHHHHhHc--cCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 534 IGEYVAYCLFK--LEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 534 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777764 4455677899999999999999999999875
No 405
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.78 E-value=2e+02 Score=28.16 Aligned_cols=114 Identities=10% Similarity=-0.033 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc---cCChHH
Q 048321 427 FVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR---KGKLKE 502 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~ 502 (641)
.+.-+.+++++++. .|+.. .....+..+.+....++..+-++.+...++ -+...|...++.... .-.+++
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~----~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP----GSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHhccCcHHH
Confidence 34566777887776 45444 566677777777777877788888875433 356667666655443 123445
Q ss_pred HHHHHHhC-------CCC--------C--Chh---HHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 503 ALDFVQSM-------PIK--------S--DAG---IWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 503 A~~~~~~~-------~~~--------p--~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
...+|.+. ... + +.. ++..+...+...|-.+.|..+++-+++++
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44444432 111 1 111 22333344578999999999999999876
No 406
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=56.24 E-value=2e+02 Score=28.04 Aligned_cols=126 Identities=12% Similarity=-0.003 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc------cCChHHHHHHHHHHHhhhCCCCCC
Q 048321 409 KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH------TGFLEKGWAISIIQYDDKGISYNP 482 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~~~p 482 (641)
.|-..|+- +-.++++.++++....+ .|........|.+|-. .-+|.....+|+.+.. +.|
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~-----~ap 327 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ-----AAP 327 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-----hCC
Confidence 35556654 23467888888888876 4888888777776532 2367777788887764 345
Q ss_pred Chh-HHHHHHHHhhccCChHHHHHHHHhCCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 483 ELD-HYSCMADLLGRKGKLKEALDFVQSMPIKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 483 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
++. +.|--+ +++..--.+.++..++.+...| -...+..-...+.+.|..++|...|++++.+.++.
T Consensus 328 SPvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 328 SPVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred CCeEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 533 333322 3333444556666666655332 12244455566788899999999999988887764
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.43 E-value=1.3e+02 Score=25.37 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHhcCCC-chHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC
Q 048321 207 RTVVSWNSMVAGCTYGDK-FDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 207 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
.+..+|++++.+..+... ---+..+|..|++.+.+++..-|..++.++.+..
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 456678888888866555 3456778888888788888888888888876653
No 408
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=68 Score=30.08 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+=+++...++++.|..+.++.+.++|.++....-.|-+|.+.|.+.-|.+-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34456788899999999999999999999988888999999999999999988775543
No 409
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.40 E-value=1.3e+02 Score=28.43 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--cCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 418 IAGCALNGEFVEALDLFHQLME--LDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
|.+++..+++.+++...-+--+ ..++|...-.. |--|++.+....+.++-..-.+..+ +-+...|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~---Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS---NQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc---cCCchhhHHHHHHHH
Confidence 5566666666666654333322 12233322222 2335666666666665555543222 223334666555543
Q ss_pred -----ccCChHHHHHHHHh
Q 048321 496 -----RKGKLKEALDFVQS 509 (641)
Q Consensus 496 -----~~g~~~~A~~~~~~ 509 (641)
=.|.++||++++..
T Consensus 165 l~VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHHHhccccHHHHHHHHhc
Confidence 45778888777744
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.25 E-value=2e+02 Score=27.22 Aligned_cols=159 Identities=17% Similarity=0.038 Sum_probs=75.5
Q ss_pred hcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhcCcCchH-HHH
Q 048321 291 KCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLF----FAMEAAGELPDLVTVLSMISGCGQSGALE-LGK 365 (641)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~ 365 (641)
+.+++++|++++..- ...+.+.|+...|-++- +-..+.+..+|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666654321 23344555555444433 33333466666655455544433222111 122
Q ss_pred HHHHHHH---HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 366 WFDNYAC---SGG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 366 ~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
.+.+.++ +.+ -.-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 2222222 222 2346788888999999999999999887665544444433333333333333222
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhh
Q 048321 441 DLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 441 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 475 (641)
|...-..++ -|...+++..|...++...+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 122222333 355567888888877776644
No 411
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.76 E-value=2e+02 Score=27.21 Aligned_cols=153 Identities=18% Similarity=0.097 Sum_probs=79.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHhcCcCchHHHHHHHHH----HHHcCCCCchhHHHHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVT-------VLSMISGCGQSGALELGKWFDNY----ACSGGLKDNVMVCNAL 386 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l 386 (641)
.-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+.... |....-+....+..+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 344566777777777777777776655433 33455556666654333222221 1122212334455566
Q ss_pred HHHHHh-cCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHH----HHHHcCCCCChhhHHHH
Q 048321 387 IDMYSK-CGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFH----QLMELDLRPNRVTFLAV 452 (641)
Q Consensus 387 i~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~l 452 (641)
++.+.. ...++.-..+.....+ +- ...-.-+|..+.+.|.+.+|+.+.. ++.+..-+|+..+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 665543 2334554444444332 00 1122346778889999999987654 44444445665554433
Q ss_pred HH-HHhccCChHHHHHHHH
Q 048321 453 LQ-ACTHTGFLEKGWAISI 470 (641)
Q Consensus 453 l~-~~~~~g~~~~a~~~~~ 470 (641)
=+ +|-...++.++..-+.
T Consensus 171 ESKvyh~irnv~KskaSLT 189 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred hHHHHHHHHhhhhhhhHHH
Confidence 32 4544455544444333
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.42 E-value=33 Score=22.31 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 048321 26 IREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKA 63 (641)
Q Consensus 26 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 63 (641)
+....+.|-..++..++++|.+.|+..+...+..+++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34446788888999999999999999988888887764
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.41 E-value=81 Score=24.97 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999988876
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.21 E-value=91 Score=27.30 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=21.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+..|.+.|.+++|.+++++.++ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34568888888888888888888 66643
No 415
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.53 E-value=3.8e+02 Score=30.01 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=45.6
Q ss_pred cCCChhHHHHHHhcccCC--CCC-------chhHHHHH-HHHhcCCCchHHHHHHHHHHHC----CCCCChhhHHHHHHH
Q 048321 188 KCDDLKMAELVFCGIEER--LRT-------VVSWNSMV-AGCTYGDKFDDSLNFYRHMMYN----GFRLDVTTVVSLLSS 253 (641)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~--~~~-------~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~ 253 (641)
...++++|..+..+.... .|+ ...|+.+- ......|++++|.++.+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 445666666666555443 111 11344442 2234456667777766665443 122333444455555
Q ss_pred hcCCCchHHHHHHHHHHHHhC
Q 048321 254 FVCPEALVQGRLVHSHGIHYG 274 (641)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g 274 (641)
..-.|++++|..+.....+..
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHH
Confidence 556677777776666665543
No 416
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.89 E-value=20 Score=33.79 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=30.9
Q ss_pred ccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 496 RKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
+.|+.++|..+|+... ..|+ +.++.-+....-.+++.-+|.+++-+++.+.|.|+++.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4455555555555433 3332 223333333344455666666666666666666655544
No 417
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.41 E-value=1.2e+02 Score=23.89 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
..++|..+.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 222333334455667788888854444456677777766644 466777777777776655
Q ss_pred cCCCCCHHHH
Q 048321 339 AGELPDLVTV 348 (641)
Q Consensus 339 ~~~~p~~~t~ 348 (641)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3333333
No 418
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.61 E-value=3.7e+02 Score=29.31 Aligned_cols=85 Identities=7% Similarity=0.005 Sum_probs=43.3
Q ss_pred cCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHHh--ccCChhHHHHHHHHHHHHcC---------CCChhHHHHHHH
Q 048321 119 MGFLENVLRLFYNMRLVG---IQADFVTVMGLTQAAI--HAKHLSLLKSVHSFGIHIGV---------DADVSVCNTWIS 184 (641)
Q Consensus 119 ~g~~~~a~~l~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~ 184 (641)
.+++..|++.++.+...- ..|-...+..++.++. ..+..+++.+..+.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 367777888777765432 2333444555555544 33444555555555533221 234455555554
Q ss_pred HhH--cCCChhHHHHHHhccc
Q 048321 185 SYA--KCDDLKMAELVFCGIE 203 (641)
Q Consensus 185 ~~~--~~g~~~~A~~~~~~~~ 203 (641)
.++ ..|+++.+...++++.
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 443 4455555555544443
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.46 E-value=32 Score=31.17 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=50.5
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
....+|.+-+.+++.+++++-|+....|..++..--++|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999988876543
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.05 E-value=2.2e+02 Score=30.71 Aligned_cols=93 Identities=4% Similarity=-0.105 Sum_probs=42.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 184 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 184 (641)
+...|..-+..+...++.. ....+.+..+-.-.+......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 3345777676666555433 455555554433345556777888888888888888777765543221 123444455
Q ss_pred HhHcCCChhHHHHHHhc
Q 048321 185 SYAKCDDLKMAELVFCG 201 (641)
Q Consensus 185 ~~~~~g~~~~A~~~~~~ 201 (641)
.+.++|+......+-+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHH--------------
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 56666665554444433
No 421
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.00 E-value=23 Score=38.51 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=60.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
+.++++.+.+.+...--| .++|..+.+.|..+-|+.+.+.-..+++ +...+|+++.|
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~---------------LaLe~gnle~a 662 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFE---------------LALECGNLEVA 662 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhee---------------eehhcCCHHHH
Confidence 355666665544332222 2344445666766666665443332222 44577888888
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 504 LDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
++.-.+.. |..+|..|.......|+.+.|+..+++...
T Consensus 663 le~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 663 LEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88777654 667888888888888888888888877544
No 422
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.68 E-value=1.3e+02 Score=27.69 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCCh
Q 048321 437 LMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA 516 (641)
Q Consensus 437 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 516 (641)
....+++|....+.--+..+-+ +++++|.+.+-.-. +.|+.... ++.++.+.|+.+.|+.+++...-..+.
T Consensus 70 a~~f~ip~~~~~~~~g~W~LD~-~~~~~A~~~L~~ps------~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s 140 (226)
T PF13934_consen 70 ARAFGIPPKYIKFIQGFWLLDH-GDFEEALELLSHPS------LIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSS 140 (226)
T ss_pred HHHhCCCHHHHHHHHHHHHhCh-HhHHHHHHHhCCCC------CCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCC
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH----hcCCchHHHHH
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA----LGGRWDGVANI 572 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~eA~~~ 572 (641)
..-..+......++.+.+|....+..-+ +.....+..+..... +.|+.++-..+
T Consensus 141 ~~~~~~~~~~La~~~v~EAf~~~R~~~~--~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 141 PEALTLYFVALANGLVTEAFSFQRSYPD--ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCch--hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.57 E-value=23 Score=29.01 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=27.2
Q ss_pred HhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 048321 30 VNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKAC 64 (641)
Q Consensus 30 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 64 (641)
-..|.-..|-.+|++|++.|-.||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456778899999999999998876 88888765
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.40 E-value=1.1e+02 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 048321 392 KCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEA 430 (641)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 430 (641)
..|+.+.|.+++..+. +....|...+.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 5556666666666665554443
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.97 E-value=82 Score=31.77 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=31.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHh-------H-ccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 522 LLCACKIHLNIEIGEYVAYCL-------F-KLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~-------~-~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
|++..+-.||+..|+++++.+ + +..+-+.+.|..+|-+|...+||.+|.+.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554432 1 112234566777777788888888887777665
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.85 E-value=1.5e+02 Score=24.26 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHH
Q 048321 429 EALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
++.++|+.|...|+--... -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6667777777666655544 444555556666667776666654
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.74 E-value=65 Score=20.94 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=19.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 117 AQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQ 149 (641)
Q Consensus 117 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 149 (641)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555566666666666666555555555544
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.70 E-value=27 Score=33.00 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=40.6
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
.++.|+.++|..+|+.++.+.|+++.....++...-...+.-+|-..+-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 4678999999999999999999999988888887776666666666553
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.93 E-value=22 Score=29.02 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048321 116 FAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAA 151 (641)
Q Consensus 116 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 151 (641)
.-..|.-..|-.+|..|.++|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445777889999999999998888 466676654
No 430
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.89 E-value=4.9e+02 Score=30.01 Aligned_cols=254 Identities=9% Similarity=-0.075 Sum_probs=131.1
Q ss_pred HHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCC
Q 048321 197 LVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFD 276 (641)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 276 (641)
.+...+.. +|...-...+..+.+.+. +++...+...... +|...-...+.++...+........+..+++ .
T Consensus 625 ~L~~~L~D--~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~ 695 (897)
T PRK13800 625 ELAPYLAD--PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---S 695 (897)
T ss_pred HHHHHhcC--CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---C
Confidence 33334444 666666666666666654 3344444444432 3333333333333322211111122222222 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
+|..+-...+.++...+.-+ ...+...+..+|...=...+.++.+.+..+. +.... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 45566666666665443211 2234455556666555555666665554332 11222 1344444444555555
Q ss_pred CcCchHH-HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 048321 357 QSGALEL-GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR-ELFYALPEKIVVSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 357 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
..+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.+++...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5554332 2233333332 456778888888888888765553 34445555666666666777777765 4566766
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 435 HQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 435 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
-.+.. .|+...=...+.++.+...-..+...+..+.+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66665 56666666666677665434556666666664
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.87 E-value=5.1e+02 Score=30.14 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=15.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 048321 386 LIDMYSKCGSIGDARELFYALP 407 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~ 407 (641)
+..+|..+|...+|...|.+..
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHh
Confidence 3345777888888888887654
No 432
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=47.53 E-value=73 Score=25.58 Aligned_cols=58 Identities=14% Similarity=-0.117 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHH-------HHhHccCCCCCccHH----HHHHHHHhcCCchHHHHHHHHH
Q 048321 519 WGTLLCACKIHLNIEIGEYVA-------YCLFKLEPHSAAPYV----EMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~-------~~~~~~~p~~~~~~~----~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+..|..++...|++++++... ++-=+++.+.-..|. ..+..+...|+.+||...++..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 333444455555555444433 333345554433333 3455677889999999888764
No 433
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.51 E-value=59 Score=27.22 Aligned_cols=65 Identities=14% Similarity=-0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 501 KEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 501 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
+.|.++.+-|- ...............|++..|..+...++..+|+|...-...+++|.+.|.-.+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45555555553 223334445556778999999999999999999998888888888877765433
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.85 E-value=35 Score=32.47 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGL 147 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 147 (641)
-||..|....+.|++++|+.++++..+.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3778888888888888888888888888865544444433
No 435
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.36 E-value=33 Score=32.58 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHH-HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGT-LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
.|+..|.-.+.--.+.|.+.+.-.++.+.. ..| |+..|-. -..-+..+++++.+..++.+.+.++|++|..|.....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 444455554444445555555555665544 333 4555633 2223456788999999999999999988887765443
No 436
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.33 E-value=1.1e+02 Score=28.79 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHH-----cCChHHHHHHH
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE----KIVVSWTTMIAGCAL-----NGEFVEALDLF 434 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~-----~g~~~~A~~~~ 434 (641)
.+...-|-.|.|.|.+..+.++-..-.. .+..-|.+++..|.. .|.+++|.++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3444445556666666665555443322 233445555555443 47777776665
No 437
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.04 E-value=7.4e+02 Score=31.52 Aligned_cols=365 Identities=13% Similarity=0.076 Sum_probs=170.4
Q ss_pred HHHHHhccCChhHHHHHHHHH----HHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhc-ccCCCCCchhHHHHHHHHhc
Q 048321 147 LTQAAIHAKHLSLLKSVHSFG----IHIGVDADVSVCNTWISSYAKCDDLKMAELVFCG-IEERLRTVVSWNSMVAGCTY 221 (641)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~li~~~~~ 221 (641)
+..+-.+.+.+..|...++.- .+. ......+-.+...|+.-++.|...-+... ... ++ ...-|.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--PS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--cc---HHHHHHHHHh
Confidence 334444556666666666652 111 11223344444577777777776666552 211 22 2334445666
Q ss_pred CCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHH
Q 048321 222 GDKFDDSLNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVS-VINTLISMYSKCGDIDSAR 299 (641)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~ 299 (641)
.|++..|...|+.+.+.+ |+ ..+++-++......+.++......+-..... .+... .++.=+.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 788888888888887654 44 5667777766666666666555333332221 22222 2233334446666766666
Q ss_pred HHHhcCCCCCcchHHHH-H-HHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC
Q 048321 300 VLFDGICDRTRVSWTAM-I-SGYAQKGDLD--EALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG 375 (641)
Q Consensus 300 ~~~~~~~~~~~~~~~~l-i-~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (641)
.... ..+..+|.+. + ....+...-+ .-.++.+.+++.-+. -+.+|+..|.+
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy-------------- 1593 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSY-------------- 1593 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchH--------------
Confidence 5554 4555566554 2 2222211111 111222222221110 11122222211
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHH-HHcCCCCC----
Q 048321 376 LKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-----IVVSWTTMIAGCALNGEFVEALDLFHQL-MELDLRPN---- 445 (641)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~---- 445 (641)
...|..++....-+.- +.-.+........ +..-|..-+.--....+..+-+-.+++. .....+|+
T Consensus 1594 ----~~~Y~~~~kLH~l~el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~ 1668 (2382)
T KOG0890|consen 1594 ----VRSYEILMKLHLLLEL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSR 1668 (2382)
T ss_pred ----HHHHHHHHHHHHHHHH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccch
Confidence 1233333333222211 1111111111111 1112222221111111122222222221 11111222
Q ss_pred -hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCC-------
Q 048321 446 -RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSD------- 515 (641)
Q Consensus 446 -~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~------- 515 (641)
..+|....+.+...|.++.|....-.+.+. . -+..+--.+..+-..|+-..|+.++++.. ..|+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~----r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKES----R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 237777777778889999888776655532 1 23445556677888999999998887743 1222
Q ss_pred -hhHHHHHHHH--------H-HHcC--CHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 516 -AGIWGTLLCA--------C-KIHL--NIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 516 -~~~~~~ll~~--------~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
+..-+.++.. + ...| ..+.-++.+..+.+..|.....|+.++
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2222322222 1 1223 334556677888888886555566555
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.53 E-value=3.6e+02 Score=27.82 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=64.2
Q ss_pred HHHcCChHHHHHHHHHHH---HcCC--CCCh---hhHHHHHHHHhccCChHHHHHHHHHHHh------hhCCCCCCC---
Q 048321 421 CALNGEFVEALDLFHQLM---ELDL--RPNR---VTFLAVLQACTHTGFLEKGWAISIIQYD------DKGISYNPE--- 483 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~---~~g~--~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~p~--- 483 (641)
+.-+|++.+|.+++...- ..|. .|.. ..++.+...+.+.|.+..+..+|..+.+ ..| ++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g--~~~~~~~ 327 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG--LKPAKTF 327 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc--CCCCcce
Confidence 345688888887765432 1221 1211 1224443344556666666666666553 223 3332
Q ss_pred --------hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHH
Q 048321 484 --------LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 484 --------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~ 528 (641)
...||| .-.|...|+.-.|.+.|.+.. +..++..|..|..+|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 234554 345678899999999998876 77889999999999864
No 439
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.24 E-value=73 Score=28.38 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 480 YNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 480 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..|+...|..++..+...|+.++|.+...++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44666666666666666666666666666554
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.07 E-value=40 Score=32.08 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL 453 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 453 (641)
.-|+..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 357789999999999999999999999998765555665443
No 441
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.63 E-value=1.1e+02 Score=31.98 Aligned_cols=133 Identities=11% Similarity=-0.060 Sum_probs=90.6
Q ss_pred CCChhhHHHHHHHHhcc--CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh-ccCChHHHHHHHHhCC-CCC--Ch
Q 048321 443 RPNRVTFLAVLQACTHT--GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG-RKGKLKEALDFVQSMP-IKS--DA 516 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~p--~~ 516 (641)
-|+..+...++.-...- ..-+-|-.+|-.|.+. +.|--...| +..+|- -.|+...|...+.... .+| ..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~----~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP----NAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC----CCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 46666666665543332 2334555666666532 224333333 233444 4588889988887754 444 23
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+....|.....+.|..-.|-..+.+.+.+....|-.+..+|++|....+.+.|++.++...+..
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 4566677777888888888899999988887778889999999999999999999988876654
No 442
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.52 E-value=2.3e+02 Score=25.16 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC----------
Q 048321 306 CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG---------- 375 (641)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------- 375 (641)
.++..+.|.....+-++.-+.+++-+.|-- .+=.+++-.|.+..++.+++++++.+-+..
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~ 172 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLT 172 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 334445566666555555444443333211 112345556667777888888877776532
Q ss_pred ----CCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 048321 376 ----LKDNVMVCNALIDMYSKCGSIGDARELFYA 405 (641)
Q Consensus 376 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (641)
..+.-.+.|.-...+.++|+++.|..++++
T Consensus 173 g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 173 GPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 123344566667777777777777777764
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.77 E-value=30 Score=24.00 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=10.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLM 438 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~ 438 (641)
.+|.+|.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555444443
No 444
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.60 E-value=3.3e+02 Score=26.48 Aligned_cols=29 Identities=10% Similarity=0.246 Sum_probs=16.4
Q ss_pred CChhHHHHHhhcc-C-CCCcccHHHHHHHHH
Q 048321 89 DRLDCAYKIFDEM-A-VRDVASWNAMLVGFA 117 (641)
Q Consensus 89 ~~~~~A~~~f~~~-~-~~~~~~~~~li~~~~ 117 (641)
-.+..+.++...+ + +++...|..++..+.
T Consensus 54 ~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 54 LSYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp S-HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3456666666666 3 556667777766543
No 445
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.44 E-value=56 Score=33.16 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccC
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRVTFLAVL-QACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKG 498 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 498 (641)
+...+.++.|+.++.+.++. .||.+.|-..- .++.+.+++..|..-+..+.+ ..|+ ...|--=..++.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie-----~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE-----LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh-----cCchhhheeeeccHHHHhHH
Confidence 34456777777777777774 67666554443 466777777777766666654 2333 122222223333445
Q ss_pred ChHHHHHHHHhCC-CCCChhHHHHHHHHHHH
Q 048321 499 KLKEALDFVQSMP-IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~ 528 (641)
++.+|+..|+... ..|+..-....+.-|..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5666666666644 66666666666666543
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.22 E-value=52 Score=31.85 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=68.3
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a 535 (641)
..|.++.|++.|...+...+ |....|.--..++.+.++...|+.=+.... +.||.. .|-.-..+-+..|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp----~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP----PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCC----chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 44667777777776664322 445555555666777777777776655544 445433 333334455667888888
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
...+..+.+++-+ ...-..+-.+.-..+..++=....+..+
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 8888888877654 3344445555555555555544444433
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.37 E-value=2.6e+02 Score=26.87 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 048321 128 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI 168 (641)
Q Consensus 128 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (641)
+++.|.+.++.|.-..|.-+.-.+++.=.+.+...+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 34444444444444444444444444444444444444443
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.06 E-value=3e+02 Score=25.54 Aligned_cols=162 Identities=9% Similarity=0.030 Sum_probs=79.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh-ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT-HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
++...-+.|+++++...++++...+...+..--+.+-.+|- -.|....+++++........ -..+ .....++.-|-
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~--~~~~-~~~~~~i~~yk 83 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE--NKGN-EKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc--ccch-hHHHHHHHHHH
Confidence 45566777888888888888888765555544444444442 23445556666666554332 1222 12222222221
Q ss_pred cc------CChHHHHHHHHhCCC----CCChhHHH-HHH-HHH---HH--cC-----CHHHHHHHHHHhHc-----cCCC
Q 048321 496 RK------GKLKEALDFVQSMPI----KSDAGIWG-TLL-CAC---KI--HL-----NIEIGEYVAYCLFK-----LEPH 548 (641)
Q Consensus 496 ~~------g~~~~A~~~~~~~~~----~p~~~~~~-~ll-~~~---~~--~g-----~~~~a~~~~~~~~~-----~~p~ 548 (641)
+. .--.+.+.+++.... .+...++- -+- ..| .. .| -.+.|...++++.+ +.|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 10 012345555555331 11111221 111 111 11 11 23566677776653 5677
Q ss_pred CCccHHHHH---H-HHHhcCCchHHHHHHHHHHhCCC
Q 048321 549 SAAPYVEMA---N-KYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 549 ~~~~~~~l~---~-~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+|....... - .|--.|+.++|.++-++.-+..+
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 665433322 2 34568999999998887766543
No 449
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=41.00 E-value=29 Score=27.14 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=20.9
Q ss_pred hcHHHHHHHHHHHHHHccccCCCCCc
Q 048321 610 ELTYPVLDCLALHSREEAYSSHLKWI 635 (641)
Q Consensus 610 ~~~~~~l~~l~~~~~~~g~~~~~~~~ 635 (641)
...|.--+.+..+|...||.|++.|.
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhc
Confidence 34455556788999999999999997
No 450
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.28 E-value=69 Score=23.95 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=25.0
Q ss_pred CChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHH
Q 048321 89 DRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENV 125 (641)
Q Consensus 89 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a 125 (641)
.+.+.|.++++-++.+...+|.++..++-..|+..-|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4566777777777777777777777777666654433
No 451
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.47 E-value=1.5e+02 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=7.2
Q ss_pred hhccCChHHHHHHHHh
Q 048321 494 LGRKGKLKEALDFVQS 509 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~ 509 (641)
....|++++|...+++
T Consensus 51 ~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 51 HRRFGHYEEALQALEE 66 (94)
T ss_pred HHHhCCHHHHHHHHHH
Confidence 3344444444444444
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.35 E-value=1.6e+02 Score=31.70 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHH
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQ 44 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~ 44 (641)
-|+ .+..++-+|.++.|..+++.
T Consensus 151 FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 151 FWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHh
Confidence 687 68888899999999998843
No 453
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=38.42 E-value=4e+02 Score=26.22 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchH
Q 048321 284 TLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEA-LRLFFAMEAAGELPDLVTVLSMISGCGQSGALE 362 (641)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 362 (641)
.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+.. ..+++.+... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 3566667766666655555555443344445555554444433333 3334444333 88888888888888777666
Q ss_pred HHHHHHHHHHHcCCCCchhH
Q 048321 363 LGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~ 382 (641)
.....+..+.......+..+
T Consensus 248 ~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 248 LVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred HHHHHHHHHhcCcccCChHH
Confidence 66665666665443333333
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.46 E-value=4.5e+02 Score=26.51 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 048321 280 SVINTLISMYSKCGDIDSARVLFDGICDR------TRVSWTAMISGYAQKGDLDEALRLFFAME 337 (641)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (641)
..+.-+.+.|..||+++.|.+.+.+..+- -+..|-.+|..-.-.|+|.....+..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34566777777788888877777664211 11234444444444555555555444443
No 455
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.32 E-value=2.4e+02 Score=26.10 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=45.1
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
-.+..++...|++-++++--.++. ..| |...|..-..+....=+..+|..-+.++++++|.-
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 334456677788888888887766 334 45566555566666668899999999999999963
No 456
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.22 E-value=1.8e+02 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 048321 291 KCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEA 329 (641)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 329 (641)
..|+.+.|..+++.++ +.+..|...+.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466666667766666 6666666666666666654444
No 457
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.00 E-value=67 Score=19.71 Aligned_cols=27 Identities=4% Similarity=-0.100 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
..|..||++-...++|++|.+-+++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467888999999999999988776654
No 458
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.79 E-value=6.1e+02 Score=27.88 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=43.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
+..-|+-++|-.+.++|.... .|-. .-..++..+|+..|+-.-.++++.-...+ ...|+.-+..+.-++.-..
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD----~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD----VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc----cchHHHHHHHHHheeeEec
Confidence 444566677777777777542 2211 12223444666666666655555544422 2244444444444455555
Q ss_pred ChHHHHHHHHhCC
Q 048321 499 KLKEALDFVQSMP 511 (641)
Q Consensus 499 ~~~~A~~~~~~~~ 511 (641)
+++....+.+-+.
T Consensus 586 dp~~~~s~V~lLs 598 (929)
T KOG2062|consen 586 DPEQLPSTVSLLS 598 (929)
T ss_pred ChhhchHHHHHHh
Confidence 5555544444433
No 459
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=36.12 E-value=1.8e+02 Score=30.08 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC--------CCCccHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP--------HSAAPYV 554 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--------~~~~~~~ 554 (641)
++..|-..+.-|...+++++|.++.+-.. +...|.+|......+.+...++.++..+.+++. +-++--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34445556666777777777777766544 445677776666666666666666555544331 1122233
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 048321 555 EMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~ 574 (641)
.++....-.|+..||..++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 45555666677777776654
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.64 E-value=1.8e+02 Score=31.16 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=28.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHhccCChH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELD--LRPNRVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~ 463 (641)
+|..+|..+|++-.+.++++...... -+.=...++..++...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 56667777777777777776666532 1111235666666666666643
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.51 E-value=2.3e+02 Score=23.19 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=44.2
Q ss_pred HHHHHHHHhCC-CCCChh---HHHHHHHHHHHcCCHHHHHHHHHHhHc--cCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 501 KEALDFVQSMP-IKSDAG---IWGTLLCACKIHLNIEIGEYVAYCLFK--LEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 501 ~~A~~~~~~~~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
+++...|.... .+.|+. +|-.++..| ++ ...+|+.+.. +.-..+..|...+..+-..|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555544 444544 444444443 33 4556666654 344557788899999999999999999886
No 462
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.29 E-value=1.8e+02 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
++++-+..+.+++|+..|-...++++++.|.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 5667777888999999999999999999986
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.21 E-value=1.2e+02 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHhhccCChHHHHHHHHhC
Q 048321 489 CMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
-|...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4556677777777777777664
No 464
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=34.53 E-value=1.1e+02 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=26.6
Q ss_pred HHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
+.+.+.+...+.|+.+.....+++-+...--|+++..--+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567788888888876666666666665555666655433
No 465
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.41 E-value=84 Score=21.80 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+...++++.++.. +-|-.-...++.++...|++++|.++.+.+..
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444432 23444455567777777777777777766653
No 466
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.14 E-value=77 Score=18.60 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
.++.|..++++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 456777777777777765 55555443
No 467
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.47 E-value=5.4e+02 Score=26.29 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=40.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
...|+.-|.-.|.+.||...++++. +-...+++.+++.+.-+.|+-+.-..+++..++
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3456667788888899988888854 333456777777777777777666666665554
No 468
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.41 E-value=4.5e+02 Score=25.37 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048321 265 LVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305 (641)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 305 (641)
++|+.+...++.|.-..+..+.-.+.+.=.+.+.+.+|+.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 34444444444454444444444444444555555555444
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.17 E-value=98 Score=26.07 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=47.0
Q ss_pred CchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccC
Q 048321 4 SSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLS 68 (641)
Q Consensus 4 ~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 68 (641)
+++.+.+..-+-+.+. .=-.++..+.+.+.+-.|.++|+++++.+...+..|.=..|+.+...|
T Consensus 6 ~~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 6 EDAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4455666666655555 567888999999888999999999999887777776555566655444
No 470
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.07 E-value=4e+02 Score=24.70 Aligned_cols=81 Identities=11% Similarity=-0.062 Sum_probs=44.5
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHhccCChHHH
Q 048321 390 YSKCGSIGDARELFYALPE--KIV-VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFL-AVLQACTHTGFLEKG 465 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a 465 (641)
|....+++.|...+.+... |.+ .-|+.=+..+.+..+++.+..--.+.++ +.||.+--. .+-.+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3344556666665555433 444 3344455566666677766666666655 356665322 233344555566666
Q ss_pred HHHHHHH
Q 048321 466 WAISIIQ 472 (641)
Q Consensus 466 ~~~~~~~ 472 (641)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 471
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.95 E-value=1.1e+02 Score=33.16 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhh----------HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVT----------FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP 482 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p 482 (641)
+...++-.|....+++..+++.+.+.. -||..- |.-.++-=.+-|+-++|+...-.+.+..| .+.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg-~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG-PVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC-CCCC
Confidence 444555566667777777777777776 354321 22222222345666777777666665544 1445
Q ss_pred Ch
Q 048321 483 EL 484 (641)
Q Consensus 483 ~~ 484 (641)
|.
T Consensus 279 Dm 280 (1226)
T KOG4279|consen 279 DM 280 (1226)
T ss_pred ce
Confidence 43
No 472
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.89 E-value=1.2e+02 Score=23.99 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=8.3
Q ss_pred HHHHHhCCChhHHHHHHHH
Q 048321 317 ISGYAQKGDLDEALRLFFA 335 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~ 335 (641)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444444
No 473
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=32.78 E-value=2.5e+02 Score=22.16 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=12.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAME 337 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~ 337 (641)
++..|...+++++|...+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4455555566666666555543
No 474
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.78 E-value=1.9e+02 Score=23.58 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=32.8
Q ss_pred hCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 509 SMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 509 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+..-|++.+..+-+.+|++.+|+..|.++++-+-..-+.
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 3446789999999999999999999999999887554443
No 475
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.63 E-value=1.4e+03 Score=30.80 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=17.0
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+.++.=+..+.+.|+.++|...|..+.
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~Av 2839 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAV 2839 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHH
Confidence 344445556667777777777776543
No 476
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.42 E-value=3.9e+02 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=13.7
Q ss_pred HHHHHhhccCChHHHHHHHHhCC
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
.++.+.-|.|++++|...|.++.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455556666666666666654
No 477
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.38 E-value=2.1e+02 Score=21.39 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 048321 392 KCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEA 430 (641)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 430 (641)
...+.+.|.++++.++.++..+|.....++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445566777777777777777777777777666654443
No 478
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=32.26 E-value=5.5e+02 Score=26.06 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=50.4
Q ss_pred cCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHH--------hHcCCChhHHHHHHhcccCC-
Q 048321 135 VGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISS--------YAKCDDLKMAELVFCGIEER- 205 (641)
Q Consensus 135 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~- 205 (641)
..+.||..+.+.+-..++..-..+-...+|+..++.+-+ =...+-+||-. -.+...-+++.++++.|+..
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP-F~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP-FLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-eehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 347888888777777666666677777778777775522 22222222211 12334556778888777765
Q ss_pred -CCCchhHHHHHHHHh
Q 048321 206 -LRTVVSWNSMVAGCT 220 (641)
Q Consensus 206 -~~~~~~~~~li~~~~ 220 (641)
..|+.-+-.|..-|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 345555555555554
No 479
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.83 E-value=4.9e+02 Score=25.28 Aligned_cols=85 Identities=12% Similarity=-0.090 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHhhhCCC-CCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGIS-YNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVA 539 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (641)
-.++|.+.|+......... ...++.....+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 4677888888887532200 134555666677777788886665556655555667777888888888888999989999
Q ss_pred HHhHcc
Q 048321 540 YCLFKL 545 (641)
Q Consensus 540 ~~~~~~ 545 (641)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 998884
No 480
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.83 E-value=1.8e+02 Score=25.84 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=31.1
Q ss_pred HHHhHcCCChhHHHHHHhcccCC----CCCchhHHHHHH-HHhcCCC--chHHHHHHHHHHHC
Q 048321 183 ISSYAKCDDLKMAELVFCGIEER----LRTVVSWNSMVA-GCTYGDK--FDDSLNFYRHMMYN 238 (641)
Q Consensus 183 l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 238 (641)
.-.....|++++|.+-++.+.+. ..-...|..+.. +++.++. +.+|.-++......
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 33444556677776666655442 122344555555 5666554 55666666666554
No 481
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.57 E-value=2.2e+02 Score=29.78 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC--Ccc---hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICDR--TRV---SWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
...|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-.++....++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 345777899999999999999888321 122 223334444444444444445554443
No 482
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.49 E-value=1.3e+02 Score=22.88 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=23.0
Q ss_pred CChhHHHHHhhccCCCCcccHHHHHHHHHhcCC
Q 048321 89 DRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGF 121 (641)
Q Consensus 89 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 121 (641)
.+.+.+.++++-++.+...+|..+..++-..+.
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 456777777777777777777777777755444
No 483
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.36 E-value=2.3e+02 Score=23.85 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFL 462 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 462 (641)
..++..+.+.++.-.|.++++++.+.+...+..|....|..+...|-+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345555666666677777777777766555566666666666666643
No 484
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=31.34 E-value=30 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHhHcc------CCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 529 HLNIEIGEYVAYCLFKL------EPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.|+.+.|+.++++.+.. -|. + .....-.|++|.++.++|..
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHHHHHHHHH
Confidence 36677777776665432 121 1 23445569999999999975
No 485
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.28 E-value=2.8e+02 Score=22.42 Aligned_cols=20 Identities=10% Similarity=-0.431 Sum_probs=12.8
Q ss_pred HHHHcCCHHHHHHHHHHhHc
Q 048321 525 ACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~ 544 (641)
++...|..++|...|+.+-+
T Consensus 109 Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 109 ALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHH
Confidence 45566778888777776544
No 486
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=6.5e+02 Score=26.44 Aligned_cols=200 Identities=14% Similarity=0.000 Sum_probs=107.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFL 450 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 450 (641)
+|+..-.-.-...+...|+.+.|..+|+.+.+.. ...|...+ .+.-..++..|-..+..+.... +-+..+|.
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw-~~v~~~~~~~aad~~~~L~des-dWS~a~Y~ 341 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAW-LSVGQHQYSRAADSFDLLRDES-DWSHAFYT 341 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhh-hhhHHHHH
Confidence 4444333334455666677777888887776611 11232222 2333446777777777777642 44455555
Q ss_pred HHHHHHh--------c-cCChHHHHHHHHHHH---hhhCCCC----------------------CCChhHHHHHH---HH
Q 048321 451 AVLQACT--------H-TGFLEKGWAISIIQY---DDKGISY----------------------NPELDHYSCMA---DL 493 (641)
Q Consensus 451 ~ll~~~~--------~-~g~~~~a~~~~~~~~---~~~~~~~----------------------~p~~~~~~~l~---~~ 493 (641)
.+..+|. . .|+.+.+..+++... ...|+++ .+....|.-++ ++
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 5553332 1 123333332222211 1111000 11111122222 23
Q ss_pred hhccCChHHHH--HHHHhCC--CCCChhHHHHHHHHH--HHcCCHHHHHHHHHHhHccC------CC-CCccHHHHHHHH
Q 048321 494 LGRKGKLKEAL--DFVQSMP--IKSDAGIWGTLLCAC--KIHLNIEIGEYVAYCLFKLE------PH-SAAPYVEMANKY 560 (641)
Q Consensus 494 ~~~~g~~~~A~--~~~~~~~--~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~------p~-~~~~~~~l~~~~ 560 (641)
+.+.+. ++.. +.-.+++ ..+|......|+-++ ++.|+.+.|...++...+.+ |- -|-++.-++-+|
T Consensus 422 f~~~s~-~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~ 500 (546)
T KOG3783|consen 422 FSRMSK-NELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLY 500 (546)
T ss_pred cccCCh-hhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 333322 2222 2222233 356666666666554 67899999999998776432 11 256788899999
Q ss_pred HhcCC-chHHHHHHHHHHhC
Q 048321 561 ALGGR-WDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~-~~eA~~~~~~m~~~ 579 (641)
...|. ..++..++.+.++-
T Consensus 501 ~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 501 WDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HhcccChHHHHHHHHHHHhh
Confidence 99988 99999999998874
No 487
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.71 E-value=3.7e+02 Score=23.57 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=18.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
.-|.-|...|+++.+...|..+...++
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 445566777888887777777765433
No 488
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.57 E-value=2.4e+02 Score=30.19 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=25.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHc--CCCChhHHHHHHHHhHcCCCh
Q 048321 146 GLTQAAIHAKHLSLLKSVHSFGIHIG--VDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 146 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~ 192 (641)
+++.+|...|++..+.++++..+... -+.=...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666766666666666666665432 111123444445555555544
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.57 E-value=1.2e+02 Score=26.38 Aligned_cols=63 Identities=10% Similarity=-0.121 Sum_probs=45.2
Q ss_pred hhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC
Q 048321 6 LPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSD 69 (641)
Q Consensus 6 a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 69 (641)
+..++...+-+.+. .=-.++..+...+++-.|.++++.+.+.+..++..|.-..|..+...|-
T Consensus 13 ~~~~L~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 13 AEKLCAQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34455554445454 4567777877778888999999999999888888876666766665553
No 490
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=30.42 E-value=3e+02 Score=22.47 Aligned_cols=58 Identities=14% Similarity=-0.081 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHH-HHHHHHHHHcCCHHHHHHHHHHh
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIW-GTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
.+..++..++.-.|..++|.++++...-.+.-..+ ..++..|+...+.++..++-++.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455666666667777777766666533333333 23556666666555555544443
No 491
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.39 E-value=3.3e+02 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=18.0
Q ss_pred HHhhccCChHHHHHHHHhCCCCCChhHHHHHH
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSDAGIWGTLL 523 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 523 (641)
-.|.+.|.+++|.+++++.-..|+.......+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 44566666666666666655445444443333
No 492
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.29 E-value=4.4e+02 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC
Q 048321 421 CALNGEFVEALDLFHQLMELDLR 443 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~ 443 (641)
+...|+++.|+++.+-+++.|..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 45679999999999999988753
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.19 E-value=1.9e+02 Score=25.18 Aligned_cols=35 Identities=3% Similarity=-0.229 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC
Q 048321 157 LSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD 191 (641)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 191 (641)
.-.|.++++.+.+.+...+..|.-.-|+.+...|-
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33445555555554444444333333444444443
No 494
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=29.90 E-value=94 Score=31.06 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=11.1
Q ss_pred HHHHhhccCChHHHHHHHHh
Q 048321 490 MADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~ 509 (641)
++-+|.+.++.+-|+.-..+
T Consensus 234 lv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHhhhhcCCCchHHHHHhh
Confidence 44556666666666554433
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=29.76 E-value=4.6e+02 Score=26.55 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=52.4
Q ss_pred HHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH--------hhccCChHHHHHHHHh
Q 048321 438 MELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL--------LGRKGKLKEALDFVQS 509 (641)
Q Consensus 438 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~--------~~~~g~~~~A~~~~~~ 509 (641)
....+.||..+.+.+.+.++..-..+-...+|+...+.. .|=...+-++|-+ -.+...-++++++++.
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa----DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLen 250 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA----DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLEN 250 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHc
Confidence 345578888887777776666666677777777666432 2544444444422 2345567889999999
Q ss_pred CC---CCCChhHHHHHHHHH
Q 048321 510 MP---IKSDAGIWGTLLCAC 526 (641)
Q Consensus 510 ~~---~~p~~~~~~~ll~~~ 526 (641)
|+ .-.|+.-+.+|...|
T Consensus 251 mp~~L~~eDvpDffsLAqyY 270 (669)
T KOG3636|consen 251 MPAQLSVEDVPDFFSLAQYY 270 (669)
T ss_pred CchhcccccchhHHHHHHHH
Confidence 88 223455555555544
No 496
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=28.84 E-value=6.5e+02 Score=25.76 Aligned_cols=19 Identities=0% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHccccCCCCCccccc
Q 048321 621 LHSREEAYSSHLKWIPEHE 639 (641)
Q Consensus 621 ~~~~~~g~~~~~~~~~~~~ 639 (641)
+.-...+|.+..+|+.=+|
T Consensus 345 w~~~~~~f~~~~Ry~~G~p 363 (410)
T TIGR02270 345 WAENAPRFKPGVRYLRGKP 363 (410)
T ss_pred HHHhcccCCCcccccCCCC
Confidence 3345568888888887666
No 497
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.17 E-value=1.1e+02 Score=21.46 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=32.6
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIH 153 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 153 (641)
.+....++-++...++..-.+.++..+.+..+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34556677777777777777888888888877773 455555555555543
No 498
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.06 E-value=5.1e+02 Score=23.98 Aligned_cols=56 Identities=18% Similarity=0.359 Sum_probs=38.0
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 400 RELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 400 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
..+|+-..+|.+.....|+..|. .+++++|.+++.++-+.|+.|... .+.+.+.+-
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 34445455566777777777654 468999999999999999888654 233344433
No 499
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.87 E-value=3.3e+02 Score=24.44 Aligned_cols=90 Identities=10% Similarity=0.003 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC-ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA-APYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGK 595 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~ 595 (641)
.....++..|...||++.|-++|--++...+-|. ..|..=+.++.+.+.-....+.++.|...-.....-.....-...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 3567788888899999999999888877654332 345566678888887776667777775432211111111122223
Q ss_pred EEEEeeCCCCC
Q 048321 596 TCTFTAEDRYH 606 (641)
Q Consensus 596 ~~~~~~~~~~~ 606 (641)
.+.|..|.+.|
T Consensus 122 ~pvfrsGs~t~ 132 (199)
T PF04090_consen 122 APVFRSGSRTH 132 (199)
T ss_pred cccccCCCccc
Confidence 36677777666
No 500
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.73 E-value=7e+02 Score=25.49 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=27.3
Q ss_pred HHHHHHHHhc---CCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048321 212 WNSMVAGCTY---GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSS 253 (641)
Q Consensus 212 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 253 (641)
...++.++.+ .++.+.|+..+..|.+.|..|....-..+..+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4445555544 47888899999999988876664444444333
Done!